Query 008270
Match_columns 571
No_of_seqs 141 out of 272
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 22:13:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qip_A Protein of unknown func 99.7 8.9E-17 3E-21 147.2 7.1 143 28-174 10-163 (165)
2 3sho_A Transcriptional regulat 65.8 28 0.00096 30.8 8.8 96 65-170 40-138 (187)
3 2xhz_A KDSD, YRBH, arabinose 5 60.9 41 0.0014 29.6 8.9 96 65-171 50-148 (183)
4 1jeo_A MJ1247, hypothetical pr 58.1 23 0.00078 31.3 6.8 90 65-171 41-133 (180)
5 1m3s_A Hypothetical protein YC 44.3 60 0.0021 28.7 7.3 90 65-170 38-130 (186)
6 1vim_A Hypothetical protein AF 41.0 59 0.002 29.6 6.8 89 65-169 48-139 (200)
7 3s4y_A Thiamin pyrophosphokina 40.9 1E+02 0.0035 30.1 8.9 82 70-153 71-162 (247)
8 2yva_A DNAA initiator-associat 40.6 1.8E+02 0.0062 25.8 9.9 103 65-170 42-163 (196)
9 3o6p_A Peptide ABC transporter 40.2 8.5 0.00029 35.2 1.0 29 492-520 17-45 (229)
10 3k94_A Thiamin pyrophosphokina 38.3 66 0.0023 31.0 7.0 89 58-154 37-130 (223)
11 3fxa_A SIS domain protein; str 37.1 48 0.0016 29.8 5.5 95 65-171 46-144 (201)
12 3etn_A Putative phosphosugar i 36.6 1.7E+02 0.0057 27.2 9.3 95 65-170 60-159 (220)
13 3lvu_A ABC transporter, peripl 36.2 15 0.00052 34.2 2.1 29 492-520 14-42 (258)
14 1x92_A APC5045, phosphoheptose 35.0 1.3E+02 0.0045 26.8 8.1 50 120-170 112-167 (199)
15 1o6d_A Hypothetical UPF0247 pr 32.6 1.7E+02 0.0057 27.3 8.5 42 132-173 81-124 (163)
16 3mel_A Thiamin pyrophosphokina 31.2 46 0.0016 31.9 4.6 90 57-153 35-133 (222)
17 3lm8_A Thiamine pyrophosphokin 30.7 1.5E+02 0.0051 28.4 8.1 88 58-154 38-133 (222)
18 1olt_A Oxygen-independent copr 29.9 2E+02 0.007 29.7 9.5 29 68-96 141-169 (457)
19 3sg0_A Extracellular ligand-bi 28.3 2.1E+02 0.007 27.1 8.5 99 45-152 141-245 (386)
20 3snr_A Extracellular ligand-bi 27.0 1.4E+02 0.0049 27.8 7.1 98 45-151 117-220 (362)
21 3pam_A Transmembrane protein; 27.0 22 0.00074 33.2 1.4 28 493-520 15-42 (259)
22 2f06_A Conserved hypothetical 26.9 1.8E+02 0.006 25.0 7.2 18 132-149 119-136 (144)
23 2lci_A Protein OR36; structura 26.2 1.1E+02 0.0039 27.1 5.7 68 82-156 18-86 (134)
24 1u8x_X Maltose-6'-phosphate gl 26.0 1.1E+02 0.0039 32.5 6.9 109 28-152 57-194 (472)
25 3cq9_A Uncharacterized protein 25.4 42 0.0015 32.4 3.2 90 57-153 36-134 (227)
26 3i9v_6 NADH-quinone oxidoreduc 24.6 43 0.0015 32.0 3.0 26 449-477 138-163 (181)
27 3lop_A Substrate binding perip 24.0 2E+02 0.0069 27.3 7.7 100 46-154 124-229 (364)
28 4e16_A Precorrin-4 C(11)-methy 23.3 3E+02 0.01 26.2 8.7 88 8-98 11-113 (253)
29 2a3n_A Putative glucosamine-fr 23.3 3.2E+02 0.011 27.2 9.2 94 65-170 55-153 (355)
30 1x9g_A Putative MAR1; structur 23.2 3.6E+02 0.012 25.0 9.0 115 29-153 21-140 (200)
31 1to0_A Hypothetical UPF0247 pr 23.1 4.2E+02 0.014 24.7 9.4 42 132-173 86-130 (167)
32 2w6a_A ARF GTPase-activating p 22.5 54 0.0018 26.7 2.7 22 498-519 16-40 (63)
33 4evq_A Putative ABC transporte 22.3 2.6E+02 0.009 26.4 8.1 99 45-152 133-237 (375)
34 3kn3_A Putative periplasmic pr 21.6 76 0.0026 31.0 4.2 45 521-565 189-237 (242)
35 3ihk_A Thiamin pyrophosphokina 21.3 1.9E+02 0.0064 27.6 6.8 65 57-128 31-95 (218)
36 3hh1_A Tetrapyrrole methylase 20.3 3.7E+02 0.013 22.5 7.8 41 107-150 67-113 (117)
37 3eua_A Putative fructose-amino 20.2 4E+02 0.014 26.2 9.2 107 52-170 11-125 (329)
No 1
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=99.66 E-value=8.9e-17 Score=147.19 Aligned_cols=143 Identities=20% Similarity=0.204 Sum_probs=111.0
Q ss_pred CceEEEEEccCCCCCCCCChhhHHHHHHHHHHhcCccCce-EEEEEecCCC--CChhHHHHhhhcCCceeeccC------
Q 008270 28 AKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPV-SISAYGDTNR--IPASVQHALSSTGIALNHVPA------ 98 (571)
Q Consensus 28 AkTaVFWDIENCPVP~G~da~~Va~NIr~AL~klGY~GpV-TIrAYGD~s~--ip~~vl~aLsSSGISLihVPa------ 98 (571)
.+++||||.+||..... +......+++..++.+...|.+ ..++||++.. .....+++|...|++++..|.
T Consensus 10 ~rvavfiD~~Nl~~~~~-~~~~~~~d~~~l~~~~~~~g~l~~~~~Y~~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~ 88 (165)
T 2qip_A 10 EKIAILVDVQNVYYTCR-EAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPKQRQFHHILRGVGFEVMLKPYIQRRDG 88 (165)
T ss_dssp EEEEEEEEHHHHHHHHH-HHHSSCBCHHHHHHHHTTTEEEEEEEEEECCCCCHHHHHHHHHHHHHTCEEEECCCCCCSSC
T ss_pred CcEEEEEEHHHHHHHHH-HHcCCCCCHHHHHHHHhcCCEEEEEEEEEccCCchhHHHHHHHHHHCCcEEEEEeeeeccCC
Confidence 47999999999985421 0000001233444444445666 5799998764 234577899999999988773
Q ss_pred CCccchhhHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHHHhC-CCeEEEeccC-CCChhHHhhcCeEEEechhh
Q 008270 99 GVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMR-RYNILLAQPH-KASAPLVAAAKSVWLWTSLV 174 (571)
Q Consensus 99 G~KnAADkkMLvDML~WAlDNPpPANIMLISGDrDFS~aL~~LR~R-GYNILLAqP~-~AS~~L~aaAd~vWlWeSLL 174 (571)
..|++.|..|.+||+.++ +..+.++|+|||.||.+++..||++ |..|+++... .++..|..+|+.++.+++++
T Consensus 89 ~~k~~~Dv~laiD~~~~a---~~~d~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~~~~~s~~L~~~ad~fi~l~~~~ 163 (165)
T 2qip_A 89 SAKGDWDVGITLDAIEIA---PDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAIDDDF 163 (165)
T ss_dssp CCSCCCHHHHHHHHHHHG---GGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEECGGGSCHHHHHHSSEEEECSGGG
T ss_pred ccCCCccHHHHHHHHHhh---ccCCEEEEEECChhHHHHHHHHHHHcCcEEEEEeCCCcChHHHHHhCCEEEecchhh
Confidence 368899999999999997 5689999999999999999999997 9999998855 47899999999999998876
No 2
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=65.80 E-value=28 Score=30.79 Aligned_cols=96 Identities=19% Similarity=0.132 Sum_probs=59.3
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHhhhcCCCCceEEEEeCC---cchHHHHHHH
Q 008270 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGD---RDFSNALHQL 141 (571)
Q Consensus 65 GpVTIrAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WAlDNPpPANIMLISGD---rDFS~aL~~L 141 (571)
.+|-|.+.|....+-..+...|...|+.+..++.+. ..+.+. +..-.+-+-+++||-. .+...++..+
T Consensus 40 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~------~~~~~~---~~~~~~~d~~i~iS~sG~t~~~~~~~~~a 110 (187)
T 3sho_A 40 DHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGG------STLTIT---LANLRPTDLMIGVSVWRYLRDTVAALAGA 110 (187)
T ss_dssp SEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCT------HHHHHH---HHTCCTTEEEEEECCSSCCHHHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCc------hhHHHH---HhcCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 456666666544444556667888898887765211 111121 1122334567777754 3566778888
Q ss_pred HhCCCeEEEeccCCCChhHHhhcCeEEEe
Q 008270 142 RMRRYNILLAQPHKASAPLVAAAKSVWLW 170 (571)
Q Consensus 142 R~RGYNILLAqP~~AS~~L~aaAd~vWlW 170 (571)
+++|..|+++..... .+|...|+.++.-
T Consensus 111 k~~g~~vi~IT~~~~-s~l~~~ad~~l~~ 138 (187)
T 3sho_A 111 AERGVPTMALTDSSV-SPPARIADHVLVA 138 (187)
T ss_dssp HHTTCCEEEEESCTT-SHHHHHCSEEEEC
T ss_pred HHCCCCEEEEeCCCC-CcchhhCcEEEEe
Confidence 999999999875433 4688888877654
No 3
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=60.88 E-value=41 Score=29.62 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=59.7
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHhhhcCCCCceEEEEeCCc---chHHHHHHH
Q 008270 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (571)
Q Consensus 65 GpVTIrAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WAlDNPpPANIMLISGDr---DFS~aL~~L 141 (571)
++|.|.+.|....+-..+...|...|+....+... ..+.. .+..-.+-+-+++||... +...++..+
T Consensus 50 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~-------~~~~~---~~~~~~~~d~vI~iS~sG~t~~~~~~~~~a 119 (183)
T 2xhz_A 50 GKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPG-------EAAHG---DLGMVTPQDVVIAISNSGESSEITALIPVL 119 (183)
T ss_dssp SCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTT-------HHHHH---TSTTCCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred CeEEEEeecHHHHHHHHHHHHHHhcCceEEEeCch-------HHhhh---hhccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 47777777765444445666777778877665321 11111 111123446677888653 566778888
Q ss_pred HhCCCeEEEeccCCCChhHHhhcCeEEEec
Q 008270 142 RMRRYNILLAQPHKASAPLVAAAKSVWLWT 171 (571)
Q Consensus 142 R~RGYNILLAqP~~AS~~L~aaAd~vWlWe 171 (571)
+++|..|+++.... ..+|...|+.++...
T Consensus 120 k~~g~~vi~IT~~~-~s~la~~ad~~l~~~ 148 (183)
T 2xhz_A 120 KRLHVPLICITGRP-ESSMARAADVHLCVK 148 (183)
T ss_dssp HTTTCCEEEEESCT-TSHHHHHSSEEEECC
T ss_pred HHCCCCEEEEECCC-CChhHHhCCEEEEeC
Confidence 89999998887543 346888888776543
No 4
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=58.15 E-value=23 Score=31.25 Aligned_cols=90 Identities=16% Similarity=0.069 Sum_probs=56.6
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHhhhcCCCCceEEEEeCCc---chHHHHHHH
Q 008270 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (571)
Q Consensus 65 GpVTIrAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WAlDNPpPANIMLISGDr---DFS~aL~~L 141 (571)
.+|-|.+.|....+-..+...|...|+....+... .+..-.+-+-+++||... +...++..+
T Consensus 41 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~---------------~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a 105 (180)
T 1jeo_A 41 KKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGET---------------TTPSYEKDDLLILISGSGRTESVLTVAKKA 105 (180)
T ss_dssp SSEEEECCHHHHHHHHHHHHHHHHTTCCEEETTST---------------TCCCCCTTCEEEEEESSSCCHHHHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHHHHcCCeEEEeCCC---------------ccccCCCCCEEEEEeCCCCcHHHHHHHHHH
Confidence 45666666654444445556677778766655221 011123446678888653 566678888
Q ss_pred HhCCCeEEEeccCCCChhHHhhcCeEEEec
Q 008270 142 RMRRYNILLAQPHKASAPLVAAAKSVWLWT 171 (571)
Q Consensus 142 R~RGYNILLAqP~~AS~~L~aaAd~vWlWe 171 (571)
+++|-.|+++.....+ |...|+.++.-.
T Consensus 106 k~~g~~vi~IT~~~~s--l~~~ad~~l~~~ 133 (180)
T 1jeo_A 106 KNINNNIIAIVCECGN--VVEFADLTIPLE 133 (180)
T ss_dssp HTTCSCEEEEESSCCG--GGGGCSEEEECC
T ss_pred HHCCCcEEEEeCCCCh--HHHhCCEEEEeC
Confidence 8999999988765544 888888776543
No 5
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=44.34 E-value=60 Score=28.68 Aligned_cols=90 Identities=9% Similarity=-0.011 Sum_probs=54.9
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHhhhcCCCCceEEEEeCCc---chHHHHHHH
Q 008270 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (571)
Q Consensus 65 GpVTIrAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WAlDNPpPANIMLISGDr---DFS~aL~~L 141 (571)
.+|-|.+.|....+-..+...|...|+....+... + +..-.+-+-+++||... +...++..+
T Consensus 38 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~-----------~----~~~~~~~d~vI~iS~sG~t~~~~~~~~~a 102 (186)
T 1m3s_A 38 HQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEI-----------L----TPPLAEGDLVIIGSGSGETKSLIHTAAKA 102 (186)
T ss_dssp SCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTST-----------T----CCCCCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred CeEEEEecCHHHHHHHHHHHHHHhcCCeEEEeCcc-----------c----ccCCCCCCEEEEEcCCCCcHHHHHHHHHH
Confidence 35555555544333344556677778766655221 0 11123345677788653 566678888
Q ss_pred HhCCCeEEEeccCCCChhHHhhcCeEEEe
Q 008270 142 RMRRYNILLAQPHKASAPLVAAAKSVWLW 170 (571)
Q Consensus 142 R~RGYNILLAqP~~AS~~L~aaAd~vWlW 170 (571)
+.+|-.|+++..... .+|...|+.++.-
T Consensus 103 k~~g~~vi~IT~~~~-s~l~~~ad~~l~~ 130 (186)
T 1m3s_A 103 KSLHGIVAALTINPE-SSIGKQADLIIRM 130 (186)
T ss_dssp HHTTCEEEEEESCTT-SHHHHHCSEEEEC
T ss_pred HHCCCEEEEEECCCC-CchHHhCCEEEEe
Confidence 899999998876443 4677888866653
No 6
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=40.99 E-value=59 Score=29.61 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=55.7
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHhhhcCCCCceEEEEeCC---cchHHHHHHH
Q 008270 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGD---RDFSNALHQL 141 (571)
Q Consensus 65 GpVTIrAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WAlDNPpPANIMLISGD---rDFS~aL~~L 141 (571)
++|-|.+.|....+-..+...|...|+.+..+... .+..-.+-+-+++||.. .+...++..+
T Consensus 48 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~---------------~~~~~~~~DvvI~iS~SG~t~~~i~~~~~a 112 (200)
T 1vim_A 48 RSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGET---------------VTPRITDQDVLVGISGSGETTSVVNISKKA 112 (200)
T ss_dssp SCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTST---------------TCCCCCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred CEEEEEEecHHHHHHHHHHHHHHhcCCeEEEeCCc---------------cccCCCCCCEEEEEeCCCCcHHHHHHHHHH
Confidence 45555555554334445566677778776654211 01112344667778854 3567778888
Q ss_pred HhCCCeEEEeccCCCChhHHhhcCeEEE
Q 008270 142 RMRRYNILLAQPHKASAPLVAAAKSVWL 169 (571)
Q Consensus 142 R~RGYNILLAqP~~AS~~L~aaAd~vWl 169 (571)
+++|-.|+++..... .+|...|+.++.
T Consensus 113 k~~g~~vI~IT~~~~-s~La~~ad~~l~ 139 (200)
T 1vim_A 113 KDIGSKLVAVTGKRD-SSLAKMADVVMV 139 (200)
T ss_dssp HHHTCEEEEEESCTT-SHHHHHCSEEEE
T ss_pred HHCCCeEEEEECCCC-ChHHHhCCEEEE
Confidence 999999999875443 468888887765
No 7
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=40.93 E-value=1e+02 Score=30.08 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=50.9
Q ss_pred EEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHh--hhcCCCCceEEEEeC--Cc--chHHHHHHH-H
Q 008270 70 SAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFW--AVDNPAPSNYLLISG--DR--DFSNALHQL-R 142 (571)
Q Consensus 70 rAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~W--AlDNPpPANIMLISG--Dr--DFS~aL~~L-R 142 (571)
.+.||...+..++++.+.+.|+.+++.| .||..|-.+.+..+.- .........|+++-+ .| .+..-|+.| +
T Consensus 71 ~ivGD~DSi~~~~~~~~~~~~~~i~~~p--eKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GGR~DH~Lani~lL~~ 148 (247)
T 3s4y_A 71 FINGDFDSIRPEVREYYATKGCELISTP--DQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAGRFDQIMASVNTLFQ 148 (247)
T ss_dssp EEEECCSSSCHHHHHHHHHTTCEEEECC--CTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred EEEcCCcCCCHHHHHHHHhcCCEEEECC--CCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCCchhHHHHHHHHHHH
Confidence 3569999999999999999999999865 6888888776664431 111223455555432 22 122223333 2
Q ss_pred --h-CCCeEEEecc
Q 008270 143 --M-RRYNILLAQP 153 (571)
Q Consensus 143 --~-RGYNILLAqP 153 (571)
. .+.+|.|+..
T Consensus 149 ~~~~~~~~i~lid~ 162 (247)
T 3s4y_A 149 ATHITPFPIIIIQE 162 (247)
T ss_dssp GGGTCSSCEEEEET
T ss_pred HhhccCceEEEEeC
Confidence 2 5677877754
No 8
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=40.63 E-value=1.8e+02 Score=25.77 Aligned_cols=103 Identities=12% Similarity=0.073 Sum_probs=56.4
Q ss_pred CceEEEEEecCCCCChhHHHHhh------hcCCceeeccCCC-------ccchhhHHHHHHHHhhhcCCCCceEEEEeCC
Q 008270 65 GPVSISAYGDTNRIPASVQHALS------STGIALNHVPAGV-------KDASDKKILVDMLFWAVDNPAPSNYLLISGD 131 (571)
Q Consensus 65 GpVTIrAYGD~s~ip~~vl~aLs------SSGISLihVPaG~-------KnAADkkMLvDML~WAlDNPpPANIMLISGD 131 (571)
++|-+.+.|....+-..+...|. ..|+....+.... .+.....+..+.+. ..-.+-+-+++||..
T Consensus 42 ~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~--~~~~~~DvvI~iS~S 119 (196)
T 2yva_A 42 NKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVR--ALGHAGDVLLAISTR 119 (196)
T ss_dssp CCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHH--HHCCTTCEEEEECSS
T ss_pred CEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHH--hcCCCCCEEEEEeCC
Confidence 55666666654333334444565 5677666543210 01111222222221 112345667788854
Q ss_pred ---cchHHHHHHHHhCCCeEEEeccCCCChhHHhh---cCeEEEe
Q 008270 132 ---RDFSNALHQLRMRRYNILLAQPHKASAPLVAA---AKSVWLW 170 (571)
Q Consensus 132 ---rDFS~aL~~LR~RGYNILLAqP~~AS~~L~aa---Ad~vWlW 170 (571)
.+...++..++++|-.|+.+.... ..+|... |+.++.-
T Consensus 120 G~t~~~i~~~~~ak~~g~~vI~IT~~~-~s~la~~~~~ad~~l~~ 163 (196)
T 2yva_A 120 GNSRDIVKAVEAAVTRDMTIVALTGYD-GGELAGLLGPQDVEIRI 163 (196)
T ss_dssp SCCHHHHHHHHHHHHTTCEEEEEECTT-CHHHHTTCCTTSEEEEC
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCC-CchhhhcccCCCEEEEe
Confidence 366778888899999999887543 3456666 6765543
No 9
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=40.16 E-value=8.5 Score=35.22 Aligned_cols=29 Identities=28% Similarity=0.588 Sum_probs=25.3
Q ss_pred CCCCCChhHHHHHHHHHHHhHHHHhhcCc
Q 008270 492 EPKHRNTDVRKALNCAIEQHMVIKRSLGA 520 (571)
Q Consensus 492 d~k~~~~dv~kal~~aie~~~v~~~~~g~ 520 (571)
.+-..+..|||||..||..+.|++..++-
T Consensus 17 ~~p~~d~~vRqAl~~aiDr~~i~~~~~~g 45 (229)
T 3o6p_A 17 KSPFRNANLRKAISYSIDRKALVESILGD 45 (229)
T ss_dssp TCGGGCHHHHHHHHHTCCHHHHHHTTTCS
T ss_pred cccCCCHHHHHHHHHHhhHHHHHHHHHcC
Confidence 46678899999999999999999987753
No 10
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=38.34 E-value=66 Score=31.00 Aligned_cols=89 Identities=25% Similarity=0.369 Sum_probs=56.5
Q ss_pred HHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHhhhcCCCCceEEEEeC--Cc--c
Q 008270 58 LVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISG--DR--D 133 (571)
Q Consensus 58 L~klGY~GpVTIrAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WAlDNPpPANIMLISG--Dr--D 133 (571)
|.++|+.-. .+.||...+..+.++.+.+.|+.+++.|. .||..|-.+.+. +|.+.. +..|+++-+ .| .
T Consensus 37 l~~~g~~Pd---~ivGD~DSi~~~~~~~~~~~~~~i~~~p~-eKD~TD~e~Al~---~a~~~g-~~~I~i~Ga~GGR~DH 108 (223)
T 3k94_A 37 LLEAGFRPV---RAFGDFDSLPAEDVVKLQQAFPDLDVWPA-EKDKTDMEIALD---WAVEQT-ARCIRLFGATGGRLDH 108 (223)
T ss_dssp HHHHTCCCS---EEESCGGGSCHHHHHHHHHHCTTCCEECC-BTTBCHHHHHHH---HHHTTC-CSEEEEESCSSSSHHH
T ss_pred HHHcCCCCC---EEEeCcccCCHHHHHHHHhcCCeEEECCC-cCCCCHHHHHHH---HHHHcC-CCEEEEEcCCCCchhH
Confidence 445576532 35799999999999999999999999876 578788766544 454443 345554432 22 2
Q ss_pred hHHHHHHH-HhCCCeEEEeccC
Q 008270 134 FSNALHQL-RMRRYNILLAQPH 154 (571)
Q Consensus 134 FS~aL~~L-R~RGYNILLAqP~ 154 (571)
+...|+.| +..+.+|.|+...
T Consensus 109 ~lani~lL~~~~~~~i~lid~~ 130 (223)
T 3k94_A 109 LFGNVELLLKYADRPIEIVDRQ 130 (223)
T ss_dssp HHHHHHHHHHTTTSCEEEEETT
T ss_pred HHHHHHHHHhccCCeEEEEcCC
Confidence 33333333 3567778777543
No 11
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=37.08 E-value=48 Score=29.84 Aligned_cols=95 Identities=9% Similarity=0.129 Sum_probs=58.8
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHhh-hcCCCCceEEEEeCCc---chHHHHHH
Q 008270 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWA-VDNPAPSNYLLISGDR---DFSNALHQ 140 (571)
Q Consensus 65 GpVTIrAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WA-lDNPpPANIMLISGDr---DFS~aL~~ 140 (571)
++|.|.+.|....+-..+...|...|+....+.. . +++... ..-.+-+-+++||... +...++..
T Consensus 46 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~-------~----~~~~~~~~~~~~~dvvI~iS~sG~t~~~~~~~~~ 114 (201)
T 3fxa_A 46 GKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTP-------S----DAVHGTLGVLQKEDILILISKGGNTGELLNLIPA 114 (201)
T ss_dssp SCEEEECCTHHHHHHHHHHHHHHHTTCCEEECCH-------H----HHTTTGGGGCCTTCEEEEECSSSCCHHHHTTHHH
T ss_pred CcEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCc-------h----HHHhhhhhcCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 4677766666544444555667778887776521 1 111111 1123346677787653 55667788
Q ss_pred HHhCCCeEEEeccCCCChhHHhhcCeEEEec
Q 008270 141 LRMRRYNILLAQPHKASAPLVAAAKSVWLWT 171 (571)
Q Consensus 141 LR~RGYNILLAqP~~AS~~L~aaAd~vWlWe 171 (571)
++++|-.|+++..... .+|...|+.++...
T Consensus 115 ak~~g~~vi~IT~~~~-s~l~~~ad~~l~~~ 144 (201)
T 3fxa_A 115 CKTKGSTLIGVTENPD-SVIAKEADIFFPVS 144 (201)
T ss_dssp HHHHTCEEEEEESCTT-SHHHHHCSEEEECC
T ss_pred HHHcCCeEEEEECCCC-ChhHHhCCEEEEcC
Confidence 8999999999875443 45777788777653
No 12
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=36.60 E-value=1.7e+02 Score=27.16 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=57.9
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHhhhcCCCCceEEEEeCC---cchHHHHHHH
Q 008270 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGD---RDFSNALHQL 141 (571)
Q Consensus 65 GpVTIrAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WAlDNPpPANIMLISGD---rDFS~aL~~L 141 (571)
++|.|.+.|....+-..+...|...|+....+.... ++. ..+..-.+-+-+++||.. .+...++..+
T Consensus 60 ~~I~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~-------~~~---~~~~~~~~~DlvI~iS~SG~t~~~i~~~~~a 129 (220)
T 3etn_A 60 GKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSE-------AQH---GDLGILQENDLLLLISNSGKTREIVELTQLA 129 (220)
T ss_dssp CCEEEECSHHHHHHHHHHHHHHHHTTCCEEECCTTG-------GGB---TGGGGCCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred CEEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHH-------HHH---hhhccCCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456666666544444455666777888776664321 000 011112334667777754 3567788888
Q ss_pred Hh--CCCeEEEeccCCCChhHHhhcCeEEEe
Q 008270 142 RM--RRYNILLAQPHKASAPLVAAAKSVWLW 170 (571)
Q Consensus 142 R~--RGYNILLAqP~~AS~~L~aaAd~vWlW 170 (571)
++ +|-.|+++..... .+|...|+.++..
T Consensus 130 k~~~~Ga~vI~IT~~~~-s~La~~aD~~l~~ 159 (220)
T 3etn_A 130 HNLNPGLKFIVITGNPD-SPLASESDVCLST 159 (220)
T ss_dssp HHHCTTCEEEEEESCTT-SHHHHHSSEEEEC
T ss_pred HhcCCCCeEEEEECCCC-ChhHHhCCEEEEc
Confidence 99 9999999885433 4677788877664
No 13
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=36.23 E-value=15 Score=34.19 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=25.6
Q ss_pred CCCCCChhHHHHHHHHHHHhHHHHhhcCc
Q 008270 492 EPKHRNTDVRKALNCAIEQHMVIKRSLGA 520 (571)
Q Consensus 492 d~k~~~~dv~kal~~aie~~~v~~~~~g~ 520 (571)
.+-..+..|||||..||..+.||+..++-
T Consensus 14 ~~p~~d~~vRqAl~~aiDr~~iv~~~~~g 42 (258)
T 3lvu_A 14 RAPFDDWRLREALLLAFNFEFINDTVTGG 42 (258)
T ss_dssp STTTTSHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred CCcccCHHHHHHHHHhcCHHHHHHHHhcc
Confidence 45678999999999999999999998764
No 14
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=34.97 E-value=1.3e+02 Score=26.81 Aligned_cols=50 Identities=10% Similarity=0.033 Sum_probs=36.1
Q ss_pred CCCceEEEEeCC---cchHHHHHHHHhCCCeEEEeccCCCChhHHhh---cCeEEEe
Q 008270 120 PAPSNYLLISGD---RDFSNALHQLRMRRYNILLAQPHKASAPLVAA---AKSVWLW 170 (571)
Q Consensus 120 PpPANIMLISGD---rDFS~aL~~LR~RGYNILLAqP~~AS~~L~aa---Ad~vWlW 170 (571)
.+-+-+++||.. ++...++..++++|-.|+++... ...+|... |+.++.-
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~-~~s~La~~~~~ad~~l~~ 167 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGR-DGGGMASLLLPEDVEIRV 167 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHCCTTCEEEEC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECC-CCCcHHhccccCCEEEEe
Confidence 345667778854 36677888889999999988753 34568887 8876654
No 15
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=32.58 E-value=1.7e+02 Score=27.35 Aligned_cols=42 Identities=24% Similarity=0.445 Sum_probs=31.2
Q ss_pred cchHHHHHHHHhCCCeE-EEec-cCCCChhHHhhcCeEEEechh
Q 008270 132 RDFSNALHQLRMRRYNI-LLAQ-PHKASAPLVAAAKSVWLWTSL 173 (571)
Q Consensus 132 rDFS~aL~~LR~RGYNI-LLAq-P~~AS~~L~aaAd~vWlWeSL 173 (571)
.+|+..|..++..|-+| |++. +..-++.+...|+..|....|
T Consensus 81 ~~fA~~l~~~~~~G~~i~FvIGGa~Gl~~~v~~rAd~~lSlS~m 124 (163)
T 1o6d_A 81 EEFADFLKDLEMKGKDITILIGGPYGLNEEIFAKAHRVFSLSKM 124 (163)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCTTCCCGGGGGGCSEEEECCSS
T ss_pred HHHHHHHHHHHhcCCeEEEEEECCCCCCHHHHHhhCceEEccCC
Confidence 37999999998877667 4444 555778888889887776554
No 16
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=31.17 E-value=46 Score=31.94 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=55.3
Q ss_pred HHHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHhhhcCCCCceEEEEeC--Cc--
Q 008270 57 ALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISG--DR-- 132 (571)
Q Consensus 57 AL~klGY~GpVTIrAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WAlDNPpPANIMLISG--Dr-- 132 (571)
.|.++|+.-. .+.||...+..+.++.+.+.|+.++..|. .||..|-.+.+. +|..+.+...|+++-+ -|
T Consensus 35 ~l~~~g~~Pd---~ivGDfDSi~~~~~~~~~~~~~~~~~~~~-eKD~TD~e~Al~---~~~~~~~~~~I~i~Ga~GgRlD 107 (222)
T 3mel_A 35 HLLEADLPLQ---LAVGDFDSLSREEYHFVQETTETLIQAPA-EKDDTDTQLALQ---EALQRFPQAEMTIIGATGGRID 107 (222)
T ss_dssp HHHTTTCCCC---EEEECCTTSCTTHHHHHHHHCSSEEECCS-SCSSCHHHHHHH---HHHHHCTTSEEEEECCCSSCHH
T ss_pred HHHHCCCCCC---EEEeCcccCCHHHHHHHHhcCCcEEECCc-cCCCCHHHHHHH---HHHHhCCCceEEEEccCCCCHH
Confidence 4556777532 36799999988899999999999988776 488888655543 3444333335555443 22
Q ss_pred -chHHH--HHH--HHhCCCeEEEecc
Q 008270 133 -DFSNA--LHQ--LRMRRYNILLAQP 153 (571)
Q Consensus 133 -DFS~a--L~~--LR~RGYNILLAqP 153 (571)
-|+.+ |.. ++..+.+|.|+..
T Consensus 108 H~lani~lL~~~~~~~~~~~i~lid~ 133 (222)
T 3mel_A 108 HLLANLWLPFEPRFQGVLRQIRLCDR 133 (222)
T ss_dssp HHHHHHTGGGSHHHHTTGGGEEEECS
T ss_pred HHHHHHHHHHhhHHhccCceEEEEeC
Confidence 13322 111 3445677777754
No 17
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=30.72 E-value=1.5e+02 Score=28.37 Aligned_cols=88 Identities=23% Similarity=0.346 Sum_probs=55.1
Q ss_pred HHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHhhhcCCCCceEEEEeC--Cc---
Q 008270 58 LVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISG--DR--- 132 (571)
Q Consensus 58 L~klGY~GpVTIrAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WAlDNPpPANIMLISG--Dr--- 132 (571)
|.++|+.-. .+.||...+..+.++.+.+.|+.+++.|. .||..|-.+.+. +|.+.. +..|+++-+ .|
T Consensus 38 l~~~g~~Pd---~ivGDfDSi~~~~~~~~~~~~~~i~~~p~-eKD~TD~e~Al~---~a~~~g-~~~I~i~Ga~GgR~DH 109 (222)
T 3lm8_A 38 LLDAGIIPV---EAFGDFDSITEQERRRIEKAAPALHVYQA-EKDQTDLDLALD---WALEKQ-PDIIQIFGITGGRADH 109 (222)
T ss_dssp HHHHTCCCS---EEESCSTTSCHHHHHHHHHHCTTCEEECC-CSSSCHHHHHHH---HHHHHC-CSEEEEESCCCSCHHH
T ss_pred HHHcCCCCc---EEEeCcccCCHHHHHHHHhcCCeEEEeCC-CCCCCHHHHHHH---HHHHcC-CCEEEEEcCCCCchhH
Confidence 445676532 36799999999999999999999999986 577778766554 443432 344544432 22
Q ss_pred chHHHHHHH---HhCCCeEEEeccC
Q 008270 133 DFSNALHQL---RMRRYNILLAQPH 154 (571)
Q Consensus 133 DFS~aL~~L---R~RGYNILLAqP~ 154 (571)
-++. |+.| ...+.+|.|+...
T Consensus 110 ~lan-i~ll~~~~~~~~~i~lid~~ 133 (222)
T 3lm8_A 110 FLGN-IQLLYKGVKTNIKIRLIDKQ 133 (222)
T ss_dssp HHHH-HHHHHHHHHTTCEEEEEETT
T ss_pred HHHH-HHHHHHHHhcCCcEEEEeCC
Confidence 2333 3333 2346777777543
No 18
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=29.88 E-value=2e+02 Score=29.68 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=17.0
Q ss_pred EEEEEecCCCCChhHHHHhhhcCCceeec
Q 008270 68 SISAYGDTNRIPASVQHALSSTGIALNHV 96 (571)
Q Consensus 68 TIrAYGD~s~ip~~vl~aLsSSGISLihV 96 (571)
.|+...+-..+..+.++.|...|+.-+++
T Consensus 141 eitie~~p~~l~~e~l~~L~~~G~~risl 169 (457)
T 1olt_A 141 EISIEVDPREIELDVLDHLRAEGFNRLSM 169 (457)
T ss_dssp EEEEEECSSSCCTHHHHHHHHTTCCEEEE
T ss_pred EEEEEEccCcCCHHHHHHHHHcCCCEEEE
Confidence 44445555555666667777777654444
No 19
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=28.30 E-value=2.1e+02 Score=27.10 Aligned_cols=99 Identities=13% Similarity=0.086 Sum_probs=56.5
Q ss_pred CChhhHHHHHHHHHHhcCccCceEEEEEecCCC---CChhHHHHhhhcCCceee---ccCCCccchhhHHHHHHHHhhhc
Q 008270 45 CDPHTIAQNISSALVKMNYCGPVSISAYGDTNR---IPASVQHALSSTGIALNH---VPAGVKDASDKKILVDMLFWAVD 118 (571)
Q Consensus 45 ~da~~Va~NIr~AL~klGY~GpVTIrAYGD~s~---ip~~vl~aLsSSGISLih---VPaG~KnAADkkMLvDML~WAlD 118 (571)
.+.......+-+.|.++|.+ +|.|- |.|... .-..++++|...|+++.. ++.+..+. ...+..+..
T Consensus 141 ~~~~~~~~~~~~~l~~~g~~-~ia~i-~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~--~~~~~~~~~---- 212 (386)
T 3sg0_A 141 PNDDIMAEAIGKYIAKTGAK-KVGYI-GFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASV--TGQVLKIIA---- 212 (386)
T ss_dssp CCHHHHHHHHHHHHHHTTCC-EEEEE-EESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCC--HHHHHHHHH----
T ss_pred CCcHHHHHHHHHHHHhcCCC-EEEEE-ecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcH--HHHHHHHHh----
Confidence 34445566666777776653 44433 443221 224467788889998763 23333332 223333322
Q ss_pred CCCCceEEEEeCCcchHHHHHHHHhCCCeEEEec
Q 008270 119 NPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQ 152 (571)
Q Consensus 119 NPpPANIMLISGDrDFS~aL~~LR~RGYNILLAq 152 (571)
..|.-|++...+.+...++..|++.|+++-++.
T Consensus 213 -~~~dav~~~~~~~~a~~~~~~~~~~g~~~~~~~ 245 (386)
T 3sg0_A 213 -TKPDAVFIASAGTPAVLPQKALRERGFKGAIYQ 245 (386)
T ss_dssp -TCCSEEEEECCSGGGHHHHHHHHHTTCCSEEEC
T ss_pred -cCCCEEEEecCcchHHHHHHHHHHcCCCCcEEe
Confidence 235555555544778889999999998865443
No 20
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=26.97 E-value=1.4e+02 Score=27.84 Aligned_cols=98 Identities=12% Similarity=0.053 Sum_probs=57.3
Q ss_pred CChhhHHHHHHHHHHhcCccCceEEEEEecCCC---CChhHHHHhhhcCCceee---ccCCCccchhhHHHHHHHHhhhc
Q 008270 45 CDPHTIAQNISSALVKMNYCGPVSISAYGDTNR---IPASVQHALSSTGIALNH---VPAGVKDASDKKILVDMLFWAVD 118 (571)
Q Consensus 45 ~da~~Va~NIr~AL~klGY~GpVTIrAYGD~s~---ip~~vl~aLsSSGISLih---VPaG~KnAADkkMLvDML~WAlD 118 (571)
.+.......+...|.++|.+ +|.|- |.+... .-..++++|...|+++.. ++.+..+. ...+..+..
T Consensus 117 ~~~~~~~~~~~~~l~~~g~~-~ia~i-~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~--~~~~~~l~~---- 188 (362)
T 3snr_A 117 QPIPIMGKVLYEHMKKNNVK-TVGYI-GYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSV--AGQALKLVA---- 188 (362)
T ss_dssp CCHHHHHHHHHHHHHHTTCC-EEEEE-EESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCC--HHHHHHHHH----
T ss_pred CChHHHHHHHHHHHHhcCCC-EEEEE-ecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCH--HHHHHHHHh----
Confidence 34445566666777777654 44433 443221 224467788889998754 33333332 223333322
Q ss_pred CCCCceEEEEeCCcchHHHHHHHHhCCCeEEEe
Q 008270 119 NPAPSNYLLISGDRDFSNALHQLRMRRYNILLA 151 (571)
Q Consensus 119 NPpPANIMLISGDrDFS~aL~~LR~RGYNILLA 151 (571)
..|.-|++.+.|.+...++..|++.|+++-++
T Consensus 189 -~~~dav~~~~~~~~a~~~~~~~~~~g~~~p~i 220 (362)
T 3snr_A 189 -ANPDAILVGASGTAAALPQTTLRERGYNGLIY 220 (362)
T ss_dssp -HCCSEEEEECCHHHHHHHHHHHHHTTCCSEEE
T ss_pred -cCCCEEEEecCcchHHHHHHHHHHcCCCccEE
Confidence 23556666555788888999999999887544
No 21
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=26.95 E-value=22 Score=33.15 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=24.7
Q ss_pred CCCCChhHHHHHHHHHHHhHHHHhhcCc
Q 008270 493 PKHRNTDVRKALNCAIEQHMVIKRSLGA 520 (571)
Q Consensus 493 ~k~~~~dv~kal~~aie~~~v~~~~~g~ 520 (571)
+-..+..|||||..||..+.|++..++-
T Consensus 15 ~p~~d~~vRqAi~~aiDr~~i~~~v~~g 42 (259)
T 3pam_A 15 TLFKDKRVRQALSILFDFEWVNHHLFNN 42 (259)
T ss_dssp GGGCSHHHHHHHHHHCCHHHHHHHTSCS
T ss_pred ccccCHHHHHHHHHHhhHHHHHHHHhcc
Confidence 4567899999999999999999998764
No 22
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=26.90 E-value=1.8e+02 Score=24.97 Aligned_cols=18 Identities=11% Similarity=0.466 Sum_probs=15.4
Q ss_pred cchHHHHHHHHhCCCeEE
Q 008270 132 RDFSNALHQLRMRRYNIL 149 (571)
Q Consensus 132 rDFS~aL~~LR~RGYNIL 149 (571)
.|.-.++..|+..||.|+
T Consensus 119 ~d~~~A~~~L~~~g~~v~ 136 (144)
T 2f06_A 119 SNMDKCIEVLKEKKVDLL 136 (144)
T ss_dssp SCHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHcCCEEe
Confidence 377888999999999985
No 23
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=26.24 E-value=1.1e+02 Score=27.06 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=37.8
Q ss_pred HHHHhhhcCCceeeccCCCccchhhHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHH-HhCCCeEEEeccCCC
Q 008270 82 VQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQL-RMRRYNILLAQPHKA 156 (571)
Q Consensus 82 vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WAlDNPpPANIMLISGDrDFS~aL~~L-R~RGYNILLAqP~~A 156 (571)
+..+....|..+.+|-. +| .+-.+|-..|.. ..-..|++||.|..+...+-.| ...||.|+|.-....
T Consensus 18 ikkevenqgyqvrdvnd-----sd-elkkemkklaee-knfekiliisndkqllkemlelisklgykvflllqdqd 86 (134)
T 2lci_A 18 IKKEVENQGYQVRDVND-----SD-ELKKEMKKLAEE-KNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQD 86 (134)
T ss_dssp HHHHTTTTTCEEEEECS-----HH-HHHHHHHHHHHC-CSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSC
T ss_pred HHHHHHccCeeeeecCc-----hH-HHHHHHHHHHhh-cCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCc
Confidence 44455555665555522 11 133445555532 3346688899988766554444 346898877654433
No 24
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2
Probab=26.01 E-value=1.1e+02 Score=32.47 Aligned_cols=109 Identities=16% Similarity=0.165 Sum_probs=59.5
Q ss_pred CceEEEEEccCCCCCCCCChhhHHHHHHHHHHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccc--hh
Q 008270 28 AKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDA--SD 105 (571)
Q Consensus 28 AkTaVFWDIENCPVP~G~da~~Va~NIr~AL~klGY~GpVTIrAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnA--AD 105 (571)
+.-.++||++.=. ...+....+..|...+ .+..|++..| ..++|..+.|-++-+|.+.+.. +|
T Consensus 57 ~~eV~L~Di~~e~------~~~~~~~~~~~l~~~~--~~~~I~~t~D-------~~eal~~AD~VViaag~~~~~g~~rd 121 (472)
T 1u8x_X 57 IRKLKLYDNDKER------QDRIAGACDVFIREKA--PDIEFAATTD-------PEEAFTDVDFVMAHIRVGKYAMRALD 121 (472)
T ss_dssp EEEEEEECSCHHH------HHHHHHHHHHHHHHHC--TTSEEEEESC-------HHHHHSSCSEEEECCCTTHHHHHHHH
T ss_pred CCEEEEEeCCHHH------HHHHHHHHHHHhccCC--CCCEEEEECC-------HHHHHcCCCEEEEcCCCccccccchh
Confidence 4568899986411 1112221122222222 3567777644 3356766666666666654432 22
Q ss_pred h--------------------------HHHHHHHHhhhcCCCCceEEEEeCCcchH-HHHHHHHhCCCeEEEec
Q 008270 106 K--------------------------KILVDMLFWAVDNPAPSNYLLISGDRDFS-NALHQLRMRRYNILLAQ 152 (571)
Q Consensus 106 k--------------------------kMLvDML~WAlDNPpPANIMLISGDrDFS-~aL~~LR~RGYNILLAq 152 (571)
. .++.|+..-....-|-+-|+++|..-|.. .++.++. -..+||..|
T Consensus 122 ~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~-p~~rViG~c 194 (472)
T 1u8x_X 122 EQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLR-PNSKILNIC 194 (472)
T ss_dssp HHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHS-TTCCEEECC
T ss_pred hhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhC-CCCCEEEeC
Confidence 2 35666666555555556677777776764 5666665 344788886
No 25
>3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase, thiamine pyrophosphokinase, NESG, LPR114, structural genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1}
Probab=25.38 E-value=42 Score=32.37 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=45.2
Q ss_pred HHHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHhhhcCCCCceEEEEe--CCc--
Q 008270 57 ALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLIS--GDR-- 132 (571)
Q Consensus 57 AL~klGY~GpVTIrAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WAlDNPpPANIMLIS--GDr-- 132 (571)
.|.++||.-. .+.||...+..+.++.+.+.|+.++..|. .||..|-.+.+. +|....+...|+++- |.|
T Consensus 36 ~l~~~g~~Pd---~ivGDfDSi~~e~~~~~~~~~~~~~~~~~-~KD~TD~e~Al~---~a~~~~~~~~I~i~Ga~GgR~D 108 (227)
T 3cq9_A 36 RLVKRGIQPV---MVVGDFDSIDAAELQTVKDALVGAIVVKP-DQDHTDTQLAIK---SIFEQLQPDEVHLYGATGGRLD 108 (227)
T ss_dssp HHHHTTCCCS---EEESCC---------CHHHHHHTSEEECC-CSSSCHHHHHHH---HHHHHTCCSEEEEESCSSSCHH
T ss_pred HHHHcCCCCC---EEEeCCcCCCHHHHHHHHhcCceEEECCC-CCCCCHHHHHHH---HHHHhCCCceEEEEcCCCCchh
Confidence 3446677532 36799998888888888888888887765 477677655543 444444433444433 222
Q ss_pred -chHHH--HHHHHhCCC--eEEEecc
Q 008270 133 -DFSNA--LHQLRMRRY--NILLAQP 153 (571)
Q Consensus 133 -DFS~a--L~~LR~RGY--NILLAqP 153 (571)
-++.+ |.+++.+++ +|.|+..
T Consensus 109 H~laNi~lL~~~~~~~~~~~i~lid~ 134 (227)
T 3cq9_A 109 HLLANMWLVLDPVFRQWAPQIKLIDK 134 (227)
T ss_dssp HHHHHHSGGGSHHHHTTGGGEEEECS
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 13322 222334666 7776643
No 26
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=24.57 E-value=43 Score=32.04 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=15.1
Q ss_pred CCCCCCchhhhHHHHHHHHHHhhhhcccc
Q 008270 449 QGRLTPSEYVQGLIGVILLALNTLKIERV 477 (571)
Q Consensus 449 ~g~~~p~~~~qgli~vil~al~~lk~e~~ 477 (571)
+|||+-- .-||+.|+..++.+|.|++
T Consensus 138 PGCPP~P---e~il~~l~~l~~ki~~~~~ 163 (181)
T 3i9v_6 138 PGCPPRP---EALIYAVMQLQKKVRGQAY 163 (181)
T ss_dssp CCSSCCH---HHHHHHHHHHHHHHTTCCB
T ss_pred eCCCCCH---HHHHHHHHHHHHHHhhccc
Confidence 6666633 3455666666666666654
No 27
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=23.97 E-value=2e+02 Score=27.28 Aligned_cols=100 Identities=14% Similarity=0.170 Sum_probs=58.4
Q ss_pred ChhhHHHHHHHHHHhcCccCceEEEEEecCCC---CChhHHHHhhhcCCceee---ccCCCccchhhHHHHHHHHhhhcC
Q 008270 46 DPHTIAQNISSALVKMNYCGPVSISAYGDTNR---IPASVQHALSSTGIALNH---VPAGVKDASDKKILVDMLFWAVDN 119 (571)
Q Consensus 46 da~~Va~NIr~AL~klGY~GpVTIrAYGD~s~---ip~~vl~aLsSSGISLih---VPaG~KnAADkkMLvDML~WAlDN 119 (571)
+.......+-..|.++|.+ +|.| .|.+... .-..++++|...|+++.. ++.+..+. ..++..+..
T Consensus 124 ~~~~~~~~~~~~l~~~g~~-~iai-i~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~--~~~~~~l~~----- 194 (364)
T 3lop_A 124 SYQQEIDKMITALVTIGVT-RIGV-LYQEDALGKEAITGVERTLKAHALAITAMASYPRNTANV--GPAVDKLLA----- 194 (364)
T ss_dssp CHHHHHHHHHHHHHHTTCC-CEEE-EEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCC--HHHHHHHHH-----
T ss_pred ChHHHHHHHHHHHHHcCCc-eEEE-EEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCccH--HHHHHHHHh-----
Confidence 3344455566666676654 4444 2444321 124467788889998763 23333332 223333322
Q ss_pred CCCceEEEEeCCcchHHHHHHHHhCCCeEEEeccC
Q 008270 120 PAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPH 154 (571)
Q Consensus 120 PpPANIMLISGDrDFS~aL~~LR~RGYNILLAqP~ 154 (571)
..|.-|++.+.+.+...++..+++.|+++-++...
T Consensus 195 ~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~i~~~ 229 (364)
T 3lop_A 195 ADVQAIFLGATAEPAAQFVRQYRARGGEAQLLGLS 229 (364)
T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHTTCCCEEEECT
T ss_pred CCCCEEEEecCcHHHHHHHHHHHHcCCCCeEEEec
Confidence 34566666666778889999999999988665543
No 28
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=23.33 E-value=3e+02 Score=26.20 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=52.6
Q ss_pred ccccCCCCCCcchhhhhhcCCceEEEEEc-------cCCCCCC------CCChhhHHHHHHHHHHhcCccCceEEEEEec
Q 008270 8 TVTASVSAPMASTAERQYVTAKTSVWWDI-------ENCQVPK------NCDPHTIAQNISSALVKMNYCGPVSISAYGD 74 (571)
Q Consensus 8 ~~~~~~~~~~~~~a~~rya~AkTaVFWDI-------ENCPVP~------G~da~~Va~NIr~AL~klGY~GpVTIrAYGD 74 (571)
|+|-|++..-|-++......+.+.++.|- +-++.-. ......+...|...+++ | ..|.+-.-||
T Consensus 11 G~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g--~~V~~l~~GD 87 (253)
T 4e16_A 11 GAGPGDKELITLKGYKLLSNADVVIYAGSLVNPELLEYCKEDCQIHNSAHMDLQEIIDVMREGIEN-N--KSVVRLQTGD 87 (253)
T ss_dssp ECBSSCGGGSCHHHHHHHHHCSEEEECTTTSCGGGGGGSCTTCEEEEGGGCCHHHHHHHHHHHHHT-T--CCEEEEESBC
T ss_pred eCCCCCHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHC-C--CcEEEEeCCC
Confidence 44556666788888888888888887762 1121100 11223445555555543 2 2466666888
Q ss_pred CCCC--ChhHHHHhhhcCCceeeccC
Q 008270 75 TNRI--PASVQHALSSTGIALNHVPA 98 (571)
Q Consensus 75 ~s~i--p~~vl~aLsSSGISLihVPa 98 (571)
-.-+ -..+.++|...||.+.-+|.
T Consensus 88 P~i~~~~~~l~~~l~~~gi~veviPG 113 (253)
T 4e16_A 88 FSIYGSIREQVEDLNKLNIDYDCTPG 113 (253)
T ss_dssp TTTTCCHHHHHHHHHHHTCCEEEECC
T ss_pred CccccCHHHHHHHHHHCCCCEEEECC
Confidence 5533 24466778888888888875
No 29
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=23.31 E-value=3.2e+02 Score=27.17 Aligned_cols=94 Identities=9% Similarity=0.068 Sum_probs=53.8
Q ss_pred CceEEEEEecCCCCChhHHHHhhh-cCCceeeccCCCccchhhHHHHHHHHhhhcC-CCCceEEEEeCC---cchHHHHH
Q 008270 65 GPVSISAYGDTNRIPASVQHALSS-TGIALNHVPAGVKDASDKKILVDMLFWAVDN-PAPSNYLLISGD---RDFSNALH 139 (571)
Q Consensus 65 GpVTIrAYGD~s~ip~~vl~aLsS-SGISLihVPaG~KnAADkkMLvDML~WAlDN-PpPANIMLISGD---rDFS~aL~ 139 (571)
.+|.|.+.|.....-......|.. .|+.+.... + .+++...... .+.+-+++||-. .+...++.
T Consensus 55 ~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~~~-------~----~e~~~~~~~~l~~~dlvI~iS~SG~t~e~~~a~~ 123 (355)
T 2a3n_A 55 SSLFFASVGGSLAPMMAINEFAKELTTLPVYVEQ-------A----AELIHKGNKRLNKDSVVITLSKSGDTKESVAIAE 123 (355)
T ss_dssp SCEEEEECGGGHHHHHHHHHHHHHHCCSCEEEEE-------H----HHHHHHCCTTCCTTCEEEEECSSSCCHHHHHHHH
T ss_pred CEEEEEEccHHHHHHHHHHHHHHhhcCCeEEEcC-------c----HHHHhhchhcCCCCCEEEEEeCCCCCHHHHHHHH
Confidence 456777777644332233344555 677654321 1 1222211112 345667778754 36777888
Q ss_pred HHHhCCCeEEEeccCCCChhHHhhcCeEEEe
Q 008270 140 QLRMRRYNILLAQPHKASAPLVAAAKSVWLW 170 (571)
Q Consensus 140 ~LR~RGYNILLAqP~~AS~~L~aaAd~vWlW 170 (571)
..+++|-.|+.+.... ..+|...|+.++.-
T Consensus 124 ~ak~~Ga~vi~IT~~~-~S~La~~ad~~l~~ 153 (355)
T 2a3n_A 124 WCKAQGIRVVAITKNA-DSPLAQAATWHIPM 153 (355)
T ss_dssp HHHHTTCEEEEEESCT-TSHHHHTCSEEEEC
T ss_pred HHHHCCCeEEEEECCC-CChhhHhCCEEEEe
Confidence 8889998888887543 34688888876554
No 30
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A
Probab=23.15 E-value=3.6e+02 Score=25.03 Aligned_cols=115 Identities=5% Similarity=-0.058 Sum_probs=59.2
Q ss_pred ceEEEEEccCCCCCCCCChhhHHHHHHHHHHhcCccC---ceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchh
Q 008270 29 KTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCG---PVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASD 105 (571)
Q Consensus 29 kTaVFWDIENCPVP~G~da~~Va~NIr~AL~klGY~G---pVTIrAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnAAD 105 (571)
...|..|+.|--++.-.+...+.++|.+.++...-.| +|..+- ++..-..++..+|...+...+ +... ..++-
T Consensus 21 tALlvID~Q~~f~~~~~~~~~vi~~i~~ll~~ar~~g~~~pVi~t~--~~~~~~G~~~~eL~~~~~~~v-i~K~-~~SaF 96 (200)
T 1x9g_A 21 TAFLCVDLQEAFSKRIENFANCVFVANRLARLHEVVPENTKYIVTE--HYPKGLGRIVPEITLPKTAHL-IEKT-RFSCV 96 (200)
T ss_dssp EEEEEECCBTTTTTTSTTHHHHHHHHHHHHHHHHHSTTSEEEEEEE--ESCSSSCCBCTTSCCCTTCEE-EEES-SSSSC
T ss_pred EEEEEECChHHHhhccCCHHHHHHHHHHHHHHHHHhCCCceEEEEe--ecCCccCccCHHHhCCCCCeE-EeCC-CCCCc
Confidence 3567789999888754567789999998887654445 443221 111100112223321110111 1010 11111
Q ss_pred hHHHHHHHHhhhcCCCCceEEEEe--CCcchHHHHHHHHhCCCeEEEecc
Q 008270 106 KKILVDMLFWAVDNPAPSNYLLIS--GDRDFSNALHQLRMRRYNILLAQP 153 (571)
Q Consensus 106 kkMLvDML~WAlDNPpPANIMLIS--GDrDFS~aL~~LR~RGYNILLAqP 153 (571)
.. ++..|.. ...+++|.= .|..-......+..+||+|+++.-
T Consensus 97 ~~---~L~~~L~---gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~Vv~D 140 (200)
T 1x9g_A 97 VP---QVEELLE---DVDNAVVFGIEGHACILQTVADLLDMNKRVFLPKD 140 (200)
T ss_dssp CH---HHHHTTT---TCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEGG
T ss_pred hh---hHHHHhC---CCCEEEEEEEecCcHHHHHHHHHHhCCCEEEEeCC
Confidence 11 4444432 445555432 244444577788889999998863
No 31
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=23.12 E-value=4.2e+02 Score=24.65 Aligned_cols=42 Identities=7% Similarity=0.199 Sum_probs=31.4
Q ss_pred cchHHHHHHHHhCC-CeE-EEec-cCCCChhHHhhcCeEEEechh
Q 008270 132 RDFSNALHQLRMRR-YNI-LLAQ-PHKASAPLVAAAKSVWLWTSL 173 (571)
Q Consensus 132 rDFS~aL~~LR~RG-YNI-LLAq-P~~AS~~L~aaAd~vWlWeSL 173 (571)
.+|+..|..++..| -+| |++. +..-+..+...|+..|....|
T Consensus 86 ~~fA~~l~~~~~~G~~~i~FvIGGa~Gl~~~v~~rA~~~lSlS~m 130 (167)
T 1to0_A 86 EELADTIDKLATYGKSKVTFVIGGSLGLSDTVMKRADEKLSFSKM 130 (167)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEECCSSCCCHHHHHHCSEEEESCSS
T ss_pred HHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHhhCcEEEccCC
Confidence 37999999999887 456 4444 556788899999987776554
No 32
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=22.51 E-value=54 Score=26.66 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=17.3
Q ss_pred hhHHHHHH---HHHHHhHHHHhhcC
Q 008270 498 TDVRKALN---CAIEQHMVIKRSLG 519 (571)
Q Consensus 498 ~dv~kal~---~aie~~~v~~~~~g 519 (571)
.+|||||- .-|+|-|-|..+|-
T Consensus 16 levK~ALaaSeAkiQQLmkVN~~ls 40 (63)
T 2w6a_A 16 LELKKALATSEAKVQQLMKVNSSLS 40 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhHhhh
Confidence 58999994 55889888887763
No 33
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=22.32 E-value=2.6e+02 Score=26.37 Aligned_cols=99 Identities=7% Similarity=0.010 Sum_probs=58.5
Q ss_pred CChhhHHHHHHHHHHhcCccCceEEEEEecCCC---CChhHHHHhhhcCCceee---ccCCCccchhhHHHHHHHHhhhc
Q 008270 45 CDPHTIAQNISSALVKMNYCGPVSISAYGDTNR---IPASVQHALSSTGIALNH---VPAGVKDASDKKILVDMLFWAVD 118 (571)
Q Consensus 45 ~da~~Va~NIr~AL~klGY~GpVTIrAYGD~s~---ip~~vl~aLsSSGISLih---VPaG~KnAADkkMLvDML~WAlD 118 (571)
.+.......+.+.|.+.|.+ +|.+- |.|... .-..++++|...|+++.. ++.+..+. ..++..+..
T Consensus 133 ~~~~~~~~~~~~~l~~~g~~-~ia~i-~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~--~~~~~~l~~---- 204 (375)
T 4evq_A 133 FANGQIGRATGDAMIKAGLK-KAVTV-TWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDVEF--QSALAEIAS---- 204 (375)
T ss_dssp CCHHHHHHHHHHHHHHTTCC-EEEEE-EESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCC--HHHHHHHHH----
T ss_pred CChHhHHHHHHHHHHHcCCc-EEEEE-ecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCccH--HHHHHHHHh----
Confidence 34444556666677776654 34432 333211 124467788899998753 23343332 223333332
Q ss_pred CCCCceEEEEeCCcchHHHHHHHHhCCCeEEEec
Q 008270 119 NPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQ 152 (571)
Q Consensus 119 NPpPANIMLISGDrDFS~aL~~LR~RGYNILLAq 152 (571)
..|.-|++...|.+...++..|++.|++|.++.
T Consensus 205 -~~~dai~~~~~~~~a~~~~~~~~~~g~~vp~~~ 237 (375)
T 4evq_A 205 -LKPDCVYAFFSGGGALKFIKDYAAANLGIPLWG 237 (375)
T ss_dssp -HCCSEEEEECCTHHHHHHHHHHHHTTCCCCEEE
T ss_pred -cCCCEEEEecCcchHHHHHHHHHHcCCCceEEe
Confidence 135666666788888889999999999875554
No 34
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=21.59 E-value=76 Score=31.03 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=21.3
Q ss_pred eeeeecCCCccceeec-cCCCCCCCcHHHH---HHHHHHHhCcccchhh
Q 008270 521 LPLYVPKNEKLWNCEN-LYGNPNQYPKEVW---DRIQKFLTSSSGRSAI 565 (571)
Q Consensus 521 ~~ly~~kn~~lw~cvn-~~~~~~~~~k~~w---d~i~~fl~s~~grs~i 565 (571)
|.+++-..+.|-+--- |-.||..||..-- .+.-+||+|+.|..+|
T Consensus 189 l~i~~~gd~~l~n~y~~~~v~p~~~~~~~~~~a~~f~~~l~s~~~q~~i 237 (242)
T 3kn3_A 189 MVIVLEGDNTLKNFYSIMAVNPKRCEKADYKGAKQFIDWIVSEKMQAEI 237 (242)
T ss_dssp CEEEECCCGGGCCEEEEEEECTTTCTTSCHHHHHHHHHHHHSHHHHHHH
T ss_pred eEEEEcCCcceEeeeEEEEECcccCCccCHHHHHHHHHHHcCHHHHHHH
Confidence 4555555555555444 4555555553222 2233445555555444
No 35
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=21.25 E-value=1.9e+02 Score=27.59 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=44.4
Q ss_pred HHHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHhhhcCCCCceEEEE
Q 008270 57 ALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLI 128 (571)
Q Consensus 57 AL~klGY~GpVTIrAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WAlDNPpPANIMLI 128 (571)
.|.++|+.-. .+.||...+..+.++.+.+.|+.+++.|. .||..|-.+.+. +|...-....|+++
T Consensus 31 ~l~~~g~~Pd---~ivGDfDSi~~~~~~~~~~~~~~i~~~~~-eKD~TD~e~Al~---~a~~~~~~~~I~i~ 95 (218)
T 3ihk_A 31 FLLKNQLPLD---LAIGDFDSVSAEEFKQIKAKAKKLVMAPA-EKNDTDTELALK---TIFDCFGRVEIIVF 95 (218)
T ss_dssp HHHHTTCCCS---EEEECCTTSCHHHHHHHHTTCSSEEECCS-SCSSCHHHHHHH---HHHHHTSSCEEEEE
T ss_pred HHHHcCCCCC---EEEeCcccCCHHHHHHHHhcCCeEEECCC-CCCCCHHHHHHH---HHHHhCCCCEEEEE
Confidence 4556777532 36799999999999999999999988765 577778766544 44443223455554
No 36
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=20.34 E-value=3.7e+02 Score=22.51 Aligned_cols=41 Identities=7% Similarity=0.121 Sum_probs=24.2
Q ss_pred HHHHHHHHhhhcCCCCceEEEEe--CCcch----HHHHHHHHhCCCeEEE
Q 008270 107 KILVDMLFWAVDNPAPSNYLLIS--GDRDF----SNALHQLRMRRYNILL 150 (571)
Q Consensus 107 kMLvDML~WAlDNPpPANIMLIS--GDrDF----S~aL~~LR~RGYNILL 150 (571)
.+...++.++... .++++++ ||.-+ ..++..++..|+.|.+
T Consensus 67 ~~~~~i~~~~~~G---~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~v 113 (117)
T 3hh1_A 67 RAVRQVIELLEEG---SDVALVTDAGTPAISDPGYTMASAAHAAGLPVVP 113 (117)
T ss_dssp HHHHHHHHHHHTT---CCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHCC---CeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEE
Confidence 3444555555432 3566666 78643 4566677777887744
No 37
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=20.24 E-value=4e+02 Score=26.24 Aligned_cols=107 Identities=15% Similarity=0.092 Sum_probs=62.6
Q ss_pred HHHHHHHHhcC--ccCceEEEEEecCCCCChhHHHHhhhc--CCceeeccCCCccchhhHHHHHHHHhhhcC-CCCceEE
Q 008270 52 QNISSALVKMN--YCGPVSISAYGDTNRIPASVQHALSST--GIALNHVPAGVKDASDKKILVDMLFWAVDN-PAPSNYL 126 (571)
Q Consensus 52 ~NIr~AL~klG--Y~GpVTIrAYGD~s~ip~~vl~aLsSS--GISLihVPaG~KnAADkkMLvDML~WAlDN-PpPANIM 126 (571)
..|+.+++.+- -..+|.|.+.|.....-......|... |+.+..+.. .|++...... .+.+-++
T Consensus 11 ~~i~~~v~~i~~~~~~~I~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~~~~-----------~e~~~~~~~~l~~~dlvI 79 (329)
T 3eua_A 11 REVQAFLQDLKGKTIDHVFFVACGGSSAIMYPSKYVFDRESKSINSDLYSA-----------NEFIQRNPVQLGEKSLVI 79 (329)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEECTHHHHTTHHHHHHHHHHCSSCEEEEEEH-----------HHHHHHCCTTCSTTEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEEEccHHHHHHHHHHHHHHHhcCCCeEEEEcc-----------HHHHhcCccCCCCCcEEE
Confidence 34454444443 234577777777555555566666654 777655421 1222211111 2345577
Q ss_pred EEeCC---cchHHHHHHHHhCCCeEEEeccCCCChhHHhhcCeEEEe
Q 008270 127 LISGD---RDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLW 170 (571)
Q Consensus 127 LISGD---rDFS~aL~~LR~RGYNILLAqP~~AS~~L~aaAd~vWlW 170 (571)
+||-. .+-..++...+++|-.|+.+..... .+|...|+.++..
T Consensus 80 ~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~-S~La~~ad~~l~~ 125 (329)
T 3eua_A 80 LCSHSGNTPETVKAAAFARGKGALTIAMTFKPE-SPLAQEAQYVAQY 125 (329)
T ss_dssp EEESSSCCHHHHHHHHHHHHTTCEEEEEESCTT-SHHHHHSSEEEEC
T ss_pred EEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCC-ChHHHhCCEEEEe
Confidence 77754 3677788888999999988875433 4578888876553
Done!