Query         008270
Match_columns 571
No_of_seqs    141 out of 272
Neff          3.6 
Searched_HMMs 13730
Date          Mon Mar 25 22:13:53 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008270.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008270hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1kwga3 c.23.16.5 (A:394-590)   54.3     7.7 0.00056   34.4   5.5   38   26-63      3-46  (197)
  2 d1o6da_ c.116.1.3 (A:) Hypothe  49.4      37  0.0027   28.3   8.9   42  132-173    79-122 (147)
  3 d2f06a1 d.58.18.11 (A:71-141)   43.4      11 0.00083   28.3   4.1   50   80-149    14-63  (71)
  4 d2d59a1 c.2.1.8 (A:4-142) Hypo  43.2      20  0.0014   30.0   6.0  102   52-162    10-115 (139)
  5 d1jeoa_ c.80.1.3 (A:) Probable  37.4      42   0.003   28.2   7.4   90   65-171    38-130 (177)
  6 d1ns5a_ c.116.1.3 (A:) Hypothe  33.2      58  0.0042   27.0   7.5   42  132-173    82-125 (153)
  7 d1ztpa1 d.86.1.2 (A:17-250) Ba  31.4      12 0.00087   34.9   2.8   62  448-536    67-131 (234)
  8 d1vk3a2 d.79.4.1 (A:346-507) P  27.6      11 0.00083   32.7   1.9   51  457-510    71-121 (162)
  9 d1x9ga_ c.33.1.3 (A:) Ribonucl  26.1 1.5E+02   0.011   24.7   9.2   39   23-61      6-45  (192)
 10 d1vima_ c.80.1.3 (A:) Hypothet  25.8 1.1E+02  0.0083   25.5   8.3   90   65-170    41-133 (192)
 11 d1m3sa_ c.80.1.3 (A:) Hypothet  23.3 1.6E+02   0.011   24.5   8.6   89   65-169    38-129 (186)
 12 d1vsra_ c.52.1.15 (A:) Very sh  22.0      31  0.0023   29.4   3.6   66  496-565    59-125 (134)

No 1  
>d1kwga3 c.23.16.5 (A:394-590) A4 beta-galactosidase middle domain {Thermus thermophilus [TaxId: 274]}
Probab=54.34  E-value=7.7  Score=34.35  Aligned_cols=38  Identities=16%  Similarity=0.100  Sum_probs=30.7

Q ss_pred             cCCceEEEEEccC------CCCCCCCChhhHHHHHHHHHHhcCc
Q 008270           26 VTAKTSVWWDIEN------CQVPKNCDPHTIAQNISSALVKMNY   63 (571)
Q Consensus        26 a~AkTaVFWDIEN------CPVP~G~da~~Va~NIr~AL~klGY   63 (571)
                      +.|+|+|.+|+|+      -+...+++..+.....-++|.++|+
T Consensus         3 ~~A~VAil~D~es~Wa~~~~~~~~~~~y~~~~~~~Y~al~~~gv   46 (197)
T d1kwga3           3 AQAPVALVFDYEAAWIYEVQPQGAEWSYLGLVYLFYSALRRLGL   46 (197)
T ss_dssp             CCCSEEEECCHHHHHHHHHCCSSTTCCHHHHHHHHHHHHHTTTC
T ss_pred             CcCcEEEEEehhHhhhhhccCCCCCcCHHHHHHHHHHHHHHcCC
Confidence            4678999999998      4545677777788888899999887


No 2  
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}
Probab=49.42  E-value=37  Score=28.33  Aligned_cols=42  Identities=21%  Similarity=0.400  Sum_probs=32.0

Q ss_pred             cchHHHHHHHHhCCCeEEEe-c-cCCCChhHHhhcCeEEEechh
Q 008270          132 RDFSNALHQLRMRRYNILLA-Q-PHKASAPLVAAAKSVWLWTSL  173 (571)
Q Consensus       132 rDFS~aL~~LR~RGYNILLA-q-P~~AS~~L~aaAd~vWlWeSL  173 (571)
                      .+|+..|..++..|.+|.++ . +..-+..+...|+..|....|
T Consensus        79 ~~fA~~l~~~~~~g~~i~FiIGGa~Gl~~~~~~~a~~~lSls~m  122 (147)
T d1o6da_          79 EEFADFLKDLEMKGKDITILIGGPYGLNEEIFAKAHRVFSLSKM  122 (147)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCTTCCCGGGGGGCSEEEECCSS
T ss_pred             HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHhcCcEEeCCcC
Confidence            37999999998878777554 3 555678888889988876554


No 3  
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=43.44  E-value=11  Score=28.27  Aligned_cols=50  Identities=18%  Similarity=0.306  Sum_probs=35.5

Q ss_pred             hhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHHHhCCCeEE
Q 008270           80 ASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNIL  149 (571)
Q Consensus        80 ~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WAlDNPpPANIMLISGDrDFS~aL~~LR~RGYNIL  149 (571)
                      .++.+.|...||.+.++-.                  .+...-+.+++...|.  -.+...|+..||.|+
T Consensus        14 ~~v~~~L~~~~InI~~~y~------------------~~~~~~~~~vl~vdd~--~~a~~~L~~~G~~vl   63 (71)
T d2f06a1          14 AKVLGFLSAEGVFIEYMYS------------------FANNNVANVVIRPSNM--DKCIEVLKEKKVDLL   63 (71)
T ss_dssp             HHHHHHHHHTTCCEEEEEE------------------EEETTEEEEEEEESCH--HHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHCCCCEEEEEE------------------EcCCCcEEEEEEECCH--HHHHHHHHHCCCEEE
Confidence            4577889999999987521                  1112234567777655  588999999999987


No 4  
>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=43.19  E-value=20  Score=30.00  Aligned_cols=102  Identities=15%  Similarity=0.101  Sum_probs=62.9

Q ss_pred             HHHHHHHHhcCccCceEEEEEecC---CCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHhhhcCC-CCceEEE
Q 008270           52 QNISSALVKMNYCGPVSISAYGDT---NRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP-APSNYLL  127 (571)
Q Consensus        52 ~NIr~AL~klGY~GpVTIrAYGD~---s~ip~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WAlDNP-pPANIML  127 (571)
                      ..|+++|.+     +-+|-.+|-.   .+....+.+.|...|..++-|-...++........++    .+-| +++.++|
T Consensus        10 ~~i~~~L~~-----~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl----~dlp~~iD~v~i   80 (139)
T d2d59a1          10 EDIREILTR-----YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSV----LDIPDKIEVVDL   80 (139)
T ss_dssp             HHHHHHHHH-----CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSG----GGCSSCCSEEEE
T ss_pred             HHHHHHHhc-----CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccc----cccCccceEEEE
Confidence            457777865     3367677743   3455668888999999887773322333222222222    2223 4666666


Q ss_pred             EeCCcchHHHHHHHHhCCCeEEEeccCCCChhHHh
Q 008270          128 ISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVA  162 (571)
Q Consensus       128 ISGDrDFS~aL~~LR~RGYNILLAqP~~AS~~L~a  162 (571)
                      +.....-..++..+...|...+.+++...++.+.+
T Consensus        81 ~vp~~~~~~~~~e~~~~g~k~v~~~~G~~~ee~~~  115 (139)
T d2d59a1          81 FVKPKLTMEYVEQAIKKGAKVVWFQYNTYNREASK  115 (139)
T ss_dssp             CSCHHHHHHHHHHHHHHTCSEEEECTTCCCHHHHH
T ss_pred             EeCHHHHHHHHHHHHHhCCCEEEEeccccCHHHHH
Confidence            65555555677888888998999998877665443


No 5  
>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=37.40  E-value=42  Score=28.24  Aligned_cols=90  Identities=16%  Similarity=0.087  Sum_probs=55.6

Q ss_pred             CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHhhhcCCCCceEEEEeCCc---chHHHHHHH
Q 008270           65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL  141 (571)
Q Consensus        65 GpVTIrAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WAlDNPpPANIMLISGDr---DFS~aL~~L  141 (571)
                      .+|-+.+.|....+-..+...|...|+...++....               +..-.+-+-+++||...   +-..++..+
T Consensus        38 ~~I~~~G~G~S~~~a~~~~~~l~~lg~~~~~~~~~~---------------~~~~~~~Dl~I~iS~sG~t~~~i~~~~~a  102 (177)
T d1jeoa_          38 KKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETT---------------TPSYEKDDLLILISGSGRTESVLTVAKKA  102 (177)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHHHHTTCCEEETTSTT---------------CCCCCTTCEEEEEESSSCCHHHHHHHHHH
T ss_pred             CeEEEEEccHHHHHHHHHHHHHHhcCCccccccccc---------------ccccCCCCeEEEeccccchHHHHHHHHHH
Confidence            345555555543333445566888898777653211               00112345678888654   566677888


Q ss_pred             HhCCCeEEEeccCCCChhHHhhcCeEEEec
Q 008270          142 RMRRYNILLAQPHKASAPLVAAAKSVWLWT  171 (571)
Q Consensus       142 R~RGYNILLAqP~~AS~~L~aaAd~vWlWe  171 (571)
                      |++|..|+++... .+ +|...|+..+.+.
T Consensus       103 k~~g~~vI~IT~~-~~-~l~~~aD~~l~~~  130 (177)
T d1jeoa_         103 KNINNNIIAIVCE-CG-NVVEFADLTIPLE  130 (177)
T ss_dssp             HTTCSCEEEEESS-CC-GGGGGCSEEEECC
T ss_pred             HHcCCceeEEecC-CC-cHHHhcCceEEEe
Confidence            8999999999853 33 4667788776653


No 6  
>d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]}
Probab=33.19  E-value=58  Score=27.04  Aligned_cols=42  Identities=21%  Similarity=0.369  Sum_probs=31.5

Q ss_pred             cchHHHHHHHHhCCCeEEEe-c-cCCCChhHHhhcCeEEEechh
Q 008270          132 RDFSNALHQLRMRRYNILLA-Q-PHKASAPLVAAAKSVWLWTSL  173 (571)
Q Consensus       132 rDFS~aL~~LR~RGYNILLA-q-P~~AS~~L~aaAd~vWlWeSL  173 (571)
                      .+|+..|..++..|.+|.++ . +..-+..+...|+..|....|
T Consensus        82 ~~fA~~l~~~~~~g~~i~fiIGGa~G~~~~~~~~a~~~lsls~m  125 (153)
T d1ns5a_          82 PQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSWSLSAL  125 (153)
T ss_dssp             HHHHHHHHHHHHHCSCEEEEECBTTBCCHHHHHHCSEEECCCSS
T ss_pred             HHHHHHHHHHhhccCcEEEEEEcCCCCCHHHHHhhCcEEecccC
Confidence            37999999999888887544 3 455678889889988766543


No 7  
>d1ztpa1 d.86.1.2 (A:17-250) Basophilic leukemia expressed protein BLES03 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.36  E-value=12  Score=34.94  Aligned_cols=62  Identities=24%  Similarity=0.263  Sum_probs=46.8

Q ss_pred             CCCCCCCchhhhHHHHHHHHHHhhhhccccCCCCcccchhhhcCCCCCCChhHHHHHHHHHHHhHHHHhhcCceeeeecC
Q 008270          448 TQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPK  527 (571)
Q Consensus       448 ~~g~~~p~~~~qgli~vil~al~~lk~e~~~pte~ni~dcir~gd~k~~~~dv~kal~~aie~~~v~~~~~g~~~ly~~k  527 (571)
                      .+|-.+.++.|+||+.    |++.|++                   ++|-+-+.+..+.|.+++-+    -|+.-||+..
T Consensus        67 ~~~~~p~~~d~~~L~~----a~e~l~~-------------------~gRk~t~~~l~~LA~~~~v~----sGKWmif~~p  119 (234)
T d1ztpa1          67 GQGYSPNSGDVQGLQA----AWEALQT-------------------SGRPITPGTLRQLAITHHVL----SGKWLMHLAP  119 (234)
T ss_dssp             CTTCCCCCCCHHHHHH----HHHHHHH-------------------HCCCCCHHHHHHHHHHHTCC----CEEEEEEECS
T ss_pred             CCCCCCCcchHHHHHH----HHHHHHh-------------------ccccccHHHHHHHHHHcCce----eeeeEEecCc
Confidence            5666677799999995    7777776                   34667778888999998754    6888899753


Q ss_pred             ---CCccceeec
Q 008270          528 ---NEKLWNCEN  536 (571)
Q Consensus       528 ---n~~lw~cvn  536 (571)
                         =|.+|++|-
T Consensus       120 ~d~VD~~W~~VA  131 (234)
T d1ztpa1         120 GFKLDHAWAGIA  131 (234)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence               467888763


No 8  
>d1vk3a2 d.79.4.1 (A:346-507) Phosphoribosylformylglycinamidine synthase II, domains 1 and 3 {Thermotoga maritima [TaxId: 2336]}
Probab=27.60  E-value=11  Score=32.68  Aligned_cols=51  Identities=22%  Similarity=0.406  Sum_probs=30.4

Q ss_pred             hhhHHHHHHHHHHhhhhccccCCCCcccchhhhcCCCCCCChhHHHHHHHHHHH
Q 008270          457 YVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQ  510 (571)
Q Consensus       457 ~~qgli~vil~al~~lk~e~~~pte~ni~dcir~gd~k~~~~dv~kal~~aie~  510 (571)
                      |..+.+.|. -|+.-|-.=---|  --|+||+.||+|+..-.+.+.+++..-+.
T Consensus        71 y~Ga~~aV~-Eavrnl~a~GA~P--~ai~d~LnFg~Pe~~~~~~~~~v~gl~~~  121 (162)
T d1vk3a2          71 YWGTLIAVL-ESVRKTLSVGAEP--LAITNCVNYGDPDVDPVGLSAMMTALKNA  121 (162)
T ss_dssp             HHHHHHHHH-HHHHHHHHTTCEE--EEEEEEEECSCTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHhhhccchH--HHHHHhhhcCCCCCCHHHHHHHHHHHHHH
Confidence            555555544 4444333323333  58999999999986656666666544443


No 9  
>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]}
Probab=26.12  E-value=1.5e+02  Score=24.70  Aligned_cols=39  Identities=10%  Similarity=0.006  Sum_probs=29.0

Q ss_pred             hhhcCCceE-EEEEccCCCCCCCCChhhHHHHHHHHHHhc
Q 008270           23 RQYVTAKTS-VWWDIENCQVPKNCDPHTIAQNISSALVKM   61 (571)
Q Consensus        23 ~rya~AkTa-VFWDIENCPVP~G~da~~Va~NIr~AL~kl   61 (571)
                      ++|..++++ |.-|+.+.-++.-.+...+.++|+..++..
T Consensus         6 ~~~s~~ktALlvID~Q~~f~~~~~~~~~~v~~i~~Li~~a   45 (192)
T d1x9ga_           6 PHYSKGKTAFLCVDLQEAFSKRIENFANCVFVANRLARLH   45 (192)
T ss_dssp             CCTTSSCEEEEEECCBTTTTTTSTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEEEeChhhhhcccCCHHHHHHHHHHHHHHH
Confidence            466777775 678999997775556778888888777654


No 10 
>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=25.82  E-value=1.1e+02  Score=25.53  Aligned_cols=90  Identities=14%  Similarity=0.127  Sum_probs=54.7

Q ss_pred             CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHhhhcCCCCceEEEEeCCc---chHHHHHHH
Q 008270           65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL  141 (571)
Q Consensus        65 GpVTIrAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WAlDNPpPANIMLISGDr---DFS~aL~~L  141 (571)
                      .+|-|.+.|....+-..+...|...|+.+..+....  +.             .-.+-+-+++||...   +...++..+
T Consensus        41 ~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~~~~--~~-------------~i~~~Dl~i~iS~sG~t~~~i~~~~~a  105 (192)
T d1vima_          41 RSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETV--TP-------------RITDQDVLVGISGSGETTSVVNISKKA  105 (192)
T ss_dssp             SCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTT--CC-------------CCCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred             CcEEEEecCcchhhhhhhhhhhcccccccccccccc--cc-------------cccccccceeccccccchhhHHHHHHH
Confidence            456666666543333445566777888776553210  00             001235677777553   566677888


Q ss_pred             HhCCCeEEEeccCCCChhHHhhcCeEEEe
Q 008270          142 RMRRYNILLAQPHKASAPLVAAAKSVWLW  170 (571)
Q Consensus       142 R~RGYNILLAqP~~AS~~L~aaAd~vWlW  170 (571)
                      +++|..|+++..... .+|...|+.++.-
T Consensus       106 k~~g~~vI~IT~~~~-s~l~~~ad~~l~i  133 (192)
T d1vima_         106 KDIGSKLVAVTGKRD-SSLAKMADVVMVV  133 (192)
T ss_dssp             HHHTCEEEEEESCTT-SHHHHHCSEEEEC
T ss_pred             Hhhcccceeeeeccc-cccccccceEEEe
Confidence            899999999875444 4577778877653


No 11 
>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]}
Probab=23.32  E-value=1.6e+02  Score=24.49  Aligned_cols=89  Identities=10%  Similarity=0.026  Sum_probs=54.1

Q ss_pred             CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHhhhcCCCCceEEEEeCCc---chHHHHHHH
Q 008270           65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL  141 (571)
Q Consensus        65 GpVTIrAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WAlDNPpPANIMLISGDr---DFS~aL~~L  141 (571)
                      ++|-+.+.|....+-..+...|...|+....+..             +...  .-.+-+.+++||...   +-..++..+
T Consensus        38 ~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d-------------~~~~--~~~~~Dl~I~iS~sG~t~~~i~~~~~a  102 (186)
T d1m3sa_          38 HQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGE-------------ILTP--PLAEGDLVIIGSGSGETKSLIHTAAKA  102 (186)
T ss_dssp             SCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTS-------------TTCC--CCCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred             CeEEEEECcHHHHHHHHHHHHHHhccCCCCcCCh-------------hhcc--cCCCCCEEEEecCccchhhhHHHHHHH
Confidence            4566655565433333455557778887665421             1110  012345677777543   556778888


Q ss_pred             HhCCCeEEEeccCCCChhHHhhcCeEEE
Q 008270          142 RMRRYNILLAQPHKASAPLVAAAKSVWL  169 (571)
Q Consensus       142 R~RGYNILLAqP~~AS~~L~aaAd~vWl  169 (571)
                      +.+|-.|+++..... .+|...|+.++.
T Consensus       103 k~~g~~iI~IT~~~~-s~La~~ad~~i~  129 (186)
T d1m3sa_         103 KSLHGIVAALTINPE-SSIGKQADLIIR  129 (186)
T ss_dssp             HHTTCEEEEEESCTT-SHHHHHCSEEEE
T ss_pred             HHCCCCEEEEecCCC-chhhHhCCEEEE
Confidence            999999999875433 458888887665


No 12 
>d1vsra_ c.52.1.15 (A:) Very short patch repair (VSR) endonuclease {Escherichia coli [TaxId: 562]}
Probab=22.04  E-value=31  Score=29.38  Aligned_cols=66  Identities=17%  Similarity=0.319  Sum_probs=48.8

Q ss_pred             CChhH-HHHHHHHHHHhHHHHhhcCceeeeecCCCccceeeccCCCCCCCcHHHHHHHHHHHhCcccchhh
Q 008270          496 RNTDV-RKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAI  565 (571)
Q Consensus       496 ~~~dv-~kal~~aie~~~v~~~~~g~~~ly~~kn~~lw~cvn~~~~~~~~~k~~wd~i~~fl~s~~grs~i  565 (571)
                      .|++- ++=++..+|.-.-+.+.|.++..=|-   .+|-|. +.++.+.--+++-++|.+||.+++..+.|
T Consensus        59 tn~efW~~Ki~~N~~RD~~~~~~L~~~GW~vl---~iWEce-lk~~~~~~~e~i~~~L~~~l~~~~~~~~i  125 (134)
T d1vsra_          59 TRTEFWLEKIGKNVERDRRDISRLQELGWRVL---IVWECA-LRGREKLTDEALTERLEEWICGEGASAQI  125 (134)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEE---EEEHHH-HSSTTCCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE---EEecCc-cCCcccccHHHHHHHHHHHHhCCCccccc
Confidence            45552 45577777777777777777766554   479998 56666656789999999999999888776


Done!