Query 008271
Match_columns 571
No_of_seqs 330 out of 1185
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 21:41:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.5 6.5E-14 1.4E-18 124.3 7.2 54 485-538 34-91 (102)
2 PF00612 IQ: IQ calmodulin-bin 97.7 3.7E-05 8.1E-10 49.8 3.6 21 106-126 1-21 (21)
3 KOG0160 Myosin class V heavy c 97.7 7.3E-05 1.6E-09 87.1 8.0 69 103-175 670-739 (862)
4 KOG0160 Myosin class V heavy c 97.7 0.00011 2.4E-09 85.7 8.9 76 93-171 683-758 (862)
5 smart00015 IQ Short calmodulin 97.2 0.00032 6.9E-09 47.6 2.9 22 105-126 2-23 (26)
6 KOG0164 Myosin class I heavy c 96.8 0.004 8.8E-08 71.1 8.5 64 102-175 692-755 (1001)
7 PTZ00014 myosin-A; Provisional 96.7 0.0028 6.1E-08 74.5 6.9 41 107-147 778-819 (821)
8 KOG0520 Uncharacterized conser 96.4 0.0029 6.2E-08 74.6 4.1 74 104-177 808-889 (975)
9 PF00612 IQ: IQ calmodulin-bin 96.3 0.0052 1.1E-07 39.8 3.2 19 129-147 2-20 (21)
10 KOG2128 Ras GTPase-activating 95.8 0.019 4.2E-07 69.6 7.2 81 98-178 556-646 (1401)
11 COG5022 Myosin heavy chain [Cy 95.6 0.022 4.8E-07 69.5 6.9 49 99-147 738-787 (1463)
12 KOG0520 Uncharacterized conser 95.5 0.0047 1E-07 72.9 0.7 85 91-175 818-935 (975)
13 smart00015 IQ Short calmodulin 95.0 0.026 5.6E-07 38.3 3.0 19 129-147 4-22 (26)
14 PTZ00014 myosin-A; Provisional 94.3 0.09 2E-06 62.2 7.1 41 129-172 778-818 (821)
15 KOG2128 Ras GTPase-activating 89.8 0.45 9.8E-06 58.4 5.5 63 110-175 539-613 (1401)
16 KOG0164 Myosin class I heavy c 86.3 1.2 2.6E-05 52.0 5.7 75 92-173 705-786 (1001)
17 KOG0161 Myosin class II heavy 85.1 2 4.3E-05 55.2 7.5 45 129-173 774-818 (1930)
18 KOG0377 Protein serine/threoni 83.9 1.6 3.6E-05 48.4 5.2 36 102-137 13-48 (631)
19 KOG0161 Myosin class II heavy 82.2 4.3 9.2E-05 52.4 8.6 44 104-147 771-818 (1930)
20 KOG4427 E3 ubiquitin protein l 79.2 3.3 7.2E-05 48.7 5.7 26 101-126 25-50 (1096)
21 COG5022 Myosin heavy chain [Cy 78.3 6.4 0.00014 49.2 8.0 83 94-176 756-864 (1463)
22 KOG0942 E3 ubiquitin protein l 77.7 1.9 4.1E-05 51.4 3.3 29 98-126 21-49 (1001)
23 KOG0163 Myosin class VI heavy 65.6 20 0.00043 42.7 7.7 30 107-136 814-844 (1259)
24 KOG0162 Myosin class I heavy c 65.3 8.4 0.00018 45.4 4.7 38 107-148 697-736 (1106)
25 KOG0377 Protein serine/threoni 49.4 30 0.00065 39.0 5.5 26 123-148 12-37 (631)
26 KOG0942 E3 ubiquitin protein l 42.3 57 0.0012 39.6 6.6 23 127-149 28-50 (1001)
27 KOG4427 E3 ubiquitin protein l 38.9 78 0.0017 38.0 6.9 23 128-150 30-52 (1096)
28 KOG0163 Myosin class VI heavy 28.0 2.7E+02 0.0059 33.8 8.9 58 91-149 754-834 (1259)
29 PF15157 IQ-like: IQ-like 27.4 53 0.0012 29.3 2.5 21 105-125 46-66 (97)
30 KOG0165 Microtubule-associated 22.4 1.8E+02 0.004 35.1 6.3 25 102-126 939-963 (1023)
31 PF08763 Ca_chan_IQ: Voltage g 22.0 1E+02 0.0022 23.1 2.7 18 107-124 10-27 (35)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.48 E-value=6.5e-14 Score=124.26 Aligned_cols=54 Identities=59% Similarity=0.771 Sum_probs=47.7
Q ss_pred CCcccccchhHHHhhhccCCCCCCcccc---ccccccccccCCC-CCCCCCCCCCCcc
Q 008271 485 LPSYMAATESAKAKLRLQGSPRSSQDSA---EKNSGTRRHSLPS-STNSKISSQSPRT 538 (571)
Q Consensus 485 ~psym~~tesakak~r~~~spr~~~d~~---~~~~~~rr~slp~-~~ng~~~s~spr~ 538 (571)
+|+|||+|||||||+|.|++||++++.. ++...++|||||. ..++..++++|++
T Consensus 34 ~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~~~~~~~~~~~~~ 91 (102)
T PF13178_consen 34 LPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPGSSNSGSSSSRSPRT 91 (102)
T ss_pred CCCccchhhhhhhhhhccCCcccCCCccccccccccccccccCCCCCCCcCCCCCCcc
Confidence 9999999999999999999999999986 4557889999997 4567888888876
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.74 E-value=3.7e-05 Score=49.82 Aligned_cols=21 Identities=48% Similarity=0.814 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008271 106 EKAATKAQAVFRGYLARRAFR 126 (571)
Q Consensus 106 ekAAI~IQAa~RGyLaRR~fr 126 (571)
+.|||.||++||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999999874
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.71 E-value=7.3e-05 Score=87.10 Aligned_cols=69 Identities=30% Similarity=0.326 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccc
Q 008271 103 IRQEKAATKAQAVFRGYLARRAFRAL-KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDIG 175 (571)
Q Consensus 103 lr~ekAAI~IQAa~RGyLaRR~fr~l-kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVkIQA~iRg~~aRr~~~g 175 (571)
.....+++.||..||||++|+.|..+ ++++.||+++||++.|+.. + ...+++.||..+|++..|+.|..
T Consensus 670 ~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~---~-~~~aai~~q~~~r~~~~r~~y~~ 739 (862)
T KOG0160|consen 670 DVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRET---E-REAAAIGIQKECRSYLNRRRYRA 739 (862)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh---H-HHHHHHHhHHHHHHHHHHHHHHH
Confidence 33456777899999999999998844 7888999999999999822 2 56677888888888888887754
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.69 E-value=0.00011 Score=85.71 Aligned_cols=76 Identities=26% Similarity=0.221 Sum_probs=65.5
Q ss_pred eeecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 008271 93 LQDASYDPEKIRQEKAATKAQAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRH 171 (571)
Q Consensus 93 ~~~ar~r~e~lr~ekAAI~IQAa~RGyLaRR~fr~lkaiVrLQAlvRG~lvRrq~~~~lr~~~AaVkIQA~iRg~~aRr 171 (571)
.+++..+..|++.+.+++.||+.+||+++|+......+++.||..+|++..|++|.. ...+++.+|+.+|++.+|.
T Consensus 683 ~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~---~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 683 IRGYLARKKFLQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRA---LIPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcc
Confidence 344445666999999999999999999999833355899999999999999999954 4788999999999999998
No 5
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.20 E-value=0.00032 Score=47.61 Aligned_cols=22 Identities=45% Similarity=0.776 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008271 105 QEKAATKAQAVFRGYLARRAFR 126 (571)
Q Consensus 105 ~ekAAI~IQAa~RGyLaRR~fr 126 (571)
+..+|+.||+.||||++|+.|.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4678999999999999999873
No 6
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.78 E-value=0.004 Score=71.11 Aligned_cols=64 Identities=25% Similarity=0.260 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccc
Q 008271 102 KIRQEKAATKAQAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDIG 175 (571)
Q Consensus 102 ~lr~ekAAI~IQAa~RGyLaRR~fr~lkaiVrLQAlvRG~lvRrq~~~~lr~~~AaVkIQA~iRg~~aRr~~~g 175 (571)
..+.-.-|+.||++|||+++|.+|+.++++..|=.+||.+..+ ..+..||.++|+++.++.|..
T Consensus 692 ~~~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~wyR~~K~k----------s~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 692 AERLPSLVTLLQKAWRGWLARQRYRRMKASATIIRWYRRYKLK----------SYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhhccccCC
Confidence 3445567899999999999999999887766665588855443 345678999999999888864
No 7
>PTZ00014 myosin-A; Provisional
Probab=96.71 E-value=0.0028 Score=74.54 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Q 008271 107 KAATKAQAVFRGYLARRAFRA-LKGIIRLQALIRGHLVRRQA 147 (571)
Q Consensus 107 kAAI~IQAa~RGyLaRR~fr~-lkaiVrLQAlvRG~lvRrq~ 147 (571)
..++.||++||||++|+.|.. ..+++.||+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 368899999999999999885 47899999999999988653
No 8
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.37 E-value=0.0029 Score=74.64 Aligned_cols=74 Identities=30% Similarity=0.343 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHhhhhhhhcccc
Q 008271 104 RQEKAATKAQAVFRGYLARRAFRAL-KGIIRLQALIRGHLVRRQAVATL-------GAMLGLVKLQALVRGRKVRHSDIG 175 (571)
Q Consensus 104 r~ekAAI~IQAa~RGyLaRR~fr~l-kaiVrLQAlvRG~lvRrq~~~~l-------r~~~AaVkIQA~iRg~~aRr~~~g 175 (571)
..-.||..||..||||+.|+.|.-+ .-+|+||+.+||+.+|++|.... ...-++-++|+-+|+++.+...+.
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 4467899999999999999999844 78999999999999999997532 224567788999999988877765
Q ss_pred cc
Q 008271 176 LE 177 (571)
Q Consensus 176 ~~ 177 (571)
+.
T Consensus 888 ~~ 889 (975)
T KOG0520|consen 888 QE 889 (975)
T ss_pred cc
Confidence 44
No 9
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.28 E-value=0.0052 Score=39.80 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 008271 129 KGIIRLQALIRGHLVRRQA 147 (571)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~ 147 (571)
+++|.||++|||+++|++|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999987
No 10
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=95.75 E-value=0.019 Score=69.64 Aligned_cols=81 Identities=26% Similarity=0.325 Sum_probs=64.3
Q ss_pred cCHHHHH-HHHHHHHHHHHHHHHHH---HHHHH--HHhHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHhhh
Q 008271 98 YDPEKIR-QEKAATKAQAVFRGYLA---RRAFR--ALKGIIRLQALIRGHLVRRQAVAT----LGAMLGLVKLQALVRGR 167 (571)
Q Consensus 98 ~r~e~lr-~ekAAI~IQAa~RGyLa---RR~fr--~lkaiVrLQAlvRG~lvRrq~~~~----lr~~~AaVkIQA~iRg~ 167 (571)
.+..+++ ..-....||++||||+. +..|+ ...-++.+|++.||+++|+.+... ..++..++.||+.+|++
T Consensus 556 ~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f 635 (1401)
T KOG2128|consen 556 SRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKF 635 (1401)
T ss_pred hhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhc
Confidence 4455666 55788999999999994 22333 348899999999999999998754 35688999999999999
Q ss_pred hhhhccccccc
Q 008271 168 KVRHSDIGLEV 178 (571)
Q Consensus 168 ~aRr~~~g~~~ 178 (571)
..|..|..+.-
T Consensus 636 ~~r~~y~~L~~ 646 (1401)
T KOG2128|consen 636 PNRKDYKLLFT 646 (1401)
T ss_pred ccchHHHHHhc
Confidence 99998876544
No 11
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=95.61 E-value=0.022 Score=69.50 Aligned_cols=49 Identities=33% Similarity=0.480 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH
Q 008271 99 DPEKIRQEKAATKAQAVFRGYLARRAFR-ALKGIIRLQALIRGHLVRRQA 147 (571)
Q Consensus 99 r~e~lr~ekAAI~IQAa~RGyLaRR~fr-~lkaiVrLQAlvRG~lvRrq~ 147 (571)
+.+.......+++||++|||++.|++|. .++.+..+|...+|+..|+.+
T Consensus 738 ~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~ 787 (1463)
T COG5022 738 DMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLV 787 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhc
Confidence 3344556778999999999999999987 556666777777777666544
No 12
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=95.46 E-value=0.0047 Score=72.92 Aligned_cols=85 Identities=20% Similarity=0.212 Sum_probs=67.7
Q ss_pred eeeeecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHHHH----------
Q 008271 91 LTLQDASYDPEKIRQEKAATKAQAVFRGYLARRAFRAL-----------KGIIRLQALIRGHLVRRQAVA---------- 149 (571)
Q Consensus 91 ~~~~~ar~r~e~lr~ekAAI~IQAa~RGyLaRR~fr~l-----------kaiVrLQAlvRG~lvRrq~~~---------- 149 (571)
..++++..|.+++-...-+++||+++|||..|+.|..+ -+.-++|+-+||+..|+.+..
T Consensus 818 ~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~ 897 (975)
T KOG0520|consen 818 KKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIED 897 (975)
T ss_pred hhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHH
Confidence 46788889999999999999999999999999999843 234577888999887654321
Q ss_pred ------------HhhhhHHHHHHHHHHhhhhhhhcccc
Q 008271 150 ------------TLGAMLGLVKLQALVRGRKVRHSDIG 175 (571)
Q Consensus 150 ------------~lr~~~AaVkIQA~iRg~~aRr~~~g 175 (571)
..+..+|+++||+.+|.+.++..|..
T Consensus 898 ~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR 935 (975)
T KOG0520|consen 898 CYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRR 935 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 13456899999999999999866654
No 13
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.01 E-value=0.026 Score=38.26 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 008271 129 KGIIRLQALIRGHLVRRQA 147 (571)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~ 147 (571)
.+++.||++|||+++|++|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 6789999999999999987
No 14
>PTZ00014 myosin-A; Provisional
Probab=94.29 E-value=0.09 Score=62.23 Aligned_cols=41 Identities=27% Similarity=0.235 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhc
Q 008271 129 KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHS 172 (571)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVkIQA~iRg~~aRr~ 172 (571)
..++.||++|||++.|++|.. ...++++||+.+|+++.++.
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~---~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRK---NIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999954 47899999999999998764
No 15
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=89.81 E-value=0.45 Score=58.40 Aligned_cols=63 Identities=33% Similarity=0.418 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHhhhhhhhcccc
Q 008271 110 TKAQAVFRGYLARRAFRAL--------KGIIRLQALIRGHLVRRQAVAT----LGAMLGLVKLQALVRGRKVRHSDIG 175 (571)
Q Consensus 110 I~IQAa~RGyLaRR~fr~l--------kaiVrLQAlvRG~lvRrq~~~~----lr~~~AaVkIQA~iRg~~aRr~~~g 175 (571)
.+||+..|||..|..|+.. ..++.||++|||+++ |... ......++++|+..|+++.|..+..
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~ 613 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSR 613 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHH
Confidence 4559999999999987733 478899999999996 2211 2335679999999999999988753
No 16
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=86.31 E-value=1.2 Score=51.95 Aligned_cols=75 Identities=16% Similarity=-0.003 Sum_probs=53.0
Q ss_pred eeeecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHH
Q 008271 92 TLQDASYDPEKIRQEKAATKAQAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATL-------GAMLGLVKLQALV 164 (571)
Q Consensus 92 ~~~~ar~r~e~lr~ekAAI~IQAa~RGyLaRR~fr~lkaiVrLQAlvRG~lvRrq~~~~l-------r~~~AaVkIQA~i 164 (571)
+.+|+.+|..|.|+.++++.|+ +||.|. ....+..||+.+||...++.|...+ ....+-..||.++
T Consensus 705 ~~RG~~~R~ry~rmka~~~ii~-wyR~~K------~ks~v~el~~~~rg~k~~r~ygk~~~WP~pP~~Lr~~~~~L~~lf 777 (1001)
T KOG0164|consen 705 AWRGWLARQRYRRMKASATIIR-WYRRYK------LKSYVQELQRRFRGAKQMRDYGKSIRWPAPPLVLREFEELLRELF 777 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHH------HHHHHHHHHHHHHhhhhccccCCCCCCCCCchHHHHHHHHHHHHH
Confidence 4567777888999999999999 998443 3356778999999999999885431 1234455667666
Q ss_pred hhhhhhhcc
Q 008271 165 RGRKVRHSD 173 (571)
Q Consensus 165 Rg~~aRr~~ 173 (571)
-.|++.+-.
T Consensus 778 ~rwra~~~~ 786 (1001)
T KOG0164|consen 778 IRWRAWQIL 786 (1001)
T ss_pred HHHHHHHHH
Confidence 555555444
No 17
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=85.13 E-value=2 Score=55.20 Aligned_cols=45 Identities=24% Similarity=0.199 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcc
Q 008271 129 KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSD 173 (571)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVkIQA~iRg~~aRr~~ 173 (571)
.-|+.|||.||||++|+.|........++..||..+|.|+..+.+
T Consensus 774 ~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 774 QIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 456777888888888888876666677788888888877655544
No 18
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=83.86 E-value=1.6 Score=48.41 Aligned_cols=36 Identities=33% Similarity=0.220 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008271 102 KIRQEKAATKAQAVFRGYLARRAFRALKGIIRLQAL 137 (571)
Q Consensus 102 ~lr~ekAAI~IQAa~RGyLaRR~fr~lkaiVrLQAl 137 (571)
.-|..+||+.||.|||+|.||...+.......+|++
T Consensus 13 s~raikaAilIQkWYRr~~ARle~rrr~twqIFqsl 48 (631)
T KOG0377|consen 13 STRAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL 48 (631)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 345578999999999999999988866666666776
No 19
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=82.20 E-value=4.3 Score=52.41 Aligned_cols=44 Identities=39% Similarity=0.476 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHH
Q 008271 104 RQEKAATKAQAVFRGYLARRAFRA----LKGIIRLQALIRGHLVRRQA 147 (571)
Q Consensus 104 r~ekAAI~IQAa~RGyLaRR~fr~----lkaiVrLQAlvRG~lvRrq~ 147 (571)
....-++.+|+.+|||++|+.|.. +.++..||+-+|-++..+.+
T Consensus 771 ~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 771 KLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 445668999999999999998873 37999999999999876654
No 20
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.20 E-value=3.3 Score=48.69 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008271 101 EKIRQEKAATKAQAVFRGYLARRAFR 126 (571)
Q Consensus 101 e~lr~ekAAI~IQAa~RGyLaRR~fr 126 (571)
...|.++||+.||+.||||++|++|.
T Consensus 25 ~qrrr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 25 YQRRREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999775
No 21
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=78.27 E-value=6.4 Score=49.23 Aligned_cols=83 Identities=20% Similarity=0.158 Sum_probs=50.6
Q ss_pred eecccCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHh-------------------
Q 008271 94 QDASYDPEKIRQEKAATKAQAVFRGYLARRAFR---ALKGIIRLQALIRGHLVRRQAVATL------------------- 151 (571)
Q Consensus 94 ~~ar~r~e~lr~ekAAI~IQAa~RGyLaRR~fr---~lkaiVrLQAlvRG~lvRrq~~~~l------------------- 151 (571)
|+...|.+|.+..+.+..||...+|++.|+.+. ...++++||.++|....|..+...+
T Consensus 756 R~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~ 835 (1463)
T COG5022 756 RGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRET 835 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333445556666666777777777777776554 3367777777777777666654321
Q ss_pred ----hhhHHHHHHHHHHhhhhhhhccccc
Q 008271 152 ----GAMLGLVKLQALVRGRKVRHSDIGL 176 (571)
Q Consensus 152 ----r~~~AaVkIQA~iRg~~aRr~~~g~ 176 (571)
....+.+.+|..+|....+..+..+
T Consensus 836 ~e~~~~~~~~~L~~~~~rs~~~~kr~~~L 864 (1463)
T COG5022 836 EEVEFSLKAEVLIQKFGRSLKAKKRFSLL 864 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Confidence 1234556667777776666666543
No 22
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.69 E-value=1.9 Score=51.38 Aligned_cols=29 Identities=34% Similarity=0.507 Sum_probs=24.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008271 98 YDPEKIRQEKAATKAQAVFRGYLARRAFR 126 (571)
Q Consensus 98 ~r~e~lr~ekAAI~IQAa~RGyLaRR~fr 126 (571)
.|-+..+++++|+.||+.||||++|++++
T Consensus 21 kRee~rk~e~~av~vQs~~Rg~~~r~~~~ 49 (1001)
T KOG0942|consen 21 KREEERKQEKNAVKVQSFWRGFRVRHNQK 49 (1001)
T ss_pred hhHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 45566778899999999999999999765
No 23
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=65.62 E-value=20 Score=42.69 Aligned_cols=30 Identities=43% Similarity=0.717 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHH
Q 008271 107 KAATKAQAVFRGYLARRAFR-ALKGIIRLQA 136 (571)
Q Consensus 107 kAAI~IQAa~RGyLaRR~fr-~lkaiVrLQA 136 (571)
.+++++|+++||||+|++++ .+.++.++-+
T Consensus 814 e~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~ 844 (1259)
T KOG0163|consen 814 ECVLKAQRIARGYLARKRHRPRIAGIRKINA 844 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Confidence 34455666666666666555 3333333333
No 24
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=65.33 E-value=8.4 Score=45.42 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHH
Q 008271 107 KAATKAQAVFRGYLARRAFRAL--KGIIRLQALIRGHLVRRQAV 148 (571)
Q Consensus 107 kAAI~IQAa~RGyLaRR~fr~l--kaiVrLQAlvRG~lvRrq~~ 148 (571)
.-|.+||.+||.|++||.|..+ .|.- +.-|...||++.
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~ree~t~----ll~gKKeRRr~S 736 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKMREEATK----LLLGKKERRRYS 736 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHH
Confidence 5799999999999999999866 2332 334666666663
No 25
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=49.36 E-value=30 Score=38.97 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=21.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008271 123 RAFRALKGIIRLQALIRGHLVRRQAV 148 (571)
Q Consensus 123 R~fr~lkaiVrLQAlvRG~lvRrq~~ 148 (571)
+.-+++++++.||.++|++.+|..+.
T Consensus 12 ~s~raikaAilIQkWYRr~~ARle~r 37 (631)
T KOG0377|consen 12 KSTRAIKAAILIQKWYRRYEARLEAR 37 (631)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445789999999999999998874
No 26
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.32 E-value=57 Score=39.63 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 008271 127 ALKGIIRLQALIRGHLVRRQAVA 149 (571)
Q Consensus 127 ~lkaiVrLQAlvRG~lvRrq~~~ 149 (571)
+.+++|.+|++||||.+|++...
T Consensus 28 ~e~~av~vQs~~Rg~~~r~~~~~ 50 (1001)
T KOG0942|consen 28 QEKNAVKVQSFWRGFRVRHNQKL 50 (1001)
T ss_pred HhccchHHHHHHHHHHHHHHHHH
Confidence 44899999999999999988754
No 27
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.86 E-value=78 Score=37.98 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 008271 128 LKGIIRLQALIRGHLVRRQAVAT 150 (571)
Q Consensus 128 lkaiVrLQAlvRG~lvRrq~~~~ 150 (571)
..+++.||+.+|||++|+++...
T Consensus 30 ~~aa~~iq~~lrsyl~Rkk~~~~ 52 (1096)
T KOG4427|consen 30 EAAALFIQRVLRSYLVRKKAQIE 52 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999998743
No 28
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=28.04 E-value=2.7e+02 Score=33.80 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=37.2
Q ss_pred eeeeecccCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH------------------hHHHHHHHHHHHHHHHHHH
Q 008271 91 LTLQDASYDPEKIRQEK-----AATKAQAVFRGYLARRAFRAL------------------KGIIRLQALIRGHLVRRQA 147 (571)
Q Consensus 91 ~~~~~ar~r~e~lr~ek-----AAI~IQAa~RGyLaRR~fr~l------------------kaiVrLQAlvRG~lvRrq~ 147 (571)
-|++-+-..++|-++-+ .+-.|+ -+--||.|.++... ..++++|+++||+++|+++
T Consensus 754 KVFFr~GKFaEFDqiMksDPe~m~~lv~-kVn~WLv~sRWkk~q~~a~sVIKLkNkI~yRae~v~k~Q~~~Rg~L~rkr~ 832 (1259)
T KOG0163|consen 754 KVFFRPGKFAEFDQIMKSDPETMLELVA-KVNKWLVRSRWKKSQYGALSVIKLKNKIIYRAECVLKAQRIARGYLARKRH 832 (1259)
T ss_pred eEeecCcchHHHHHHHhcCHHHHHHHHH-HHHHHHHHhHHHHhhhhhhheeehhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46666667777665533 233333 34456766654311 4678999999999999988
Q ss_pred HH
Q 008271 148 VA 149 (571)
Q Consensus 148 ~~ 149 (571)
..
T Consensus 833 ~~ 834 (1259)
T KOG0163|consen 833 RP 834 (1259)
T ss_pred ch
Confidence 53
No 29
>PF15157 IQ-like: IQ-like
Probab=27.43 E-value=53 Score=29.30 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008271 105 QEKAATKAQAVFRGYLARRAF 125 (571)
Q Consensus 105 ~ekAAI~IQAa~RGyLaRR~f 125 (571)
.+.-+..||++||-|++|...
T Consensus 46 Leskvkiiqrawre~lq~qd~ 66 (97)
T PF15157_consen 46 LESKVKIIQRAWREYLQRQDP 66 (97)
T ss_pred hhHHHHHHHHHHHHHHHhcCC
Confidence 355578899999999998853
No 30
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=22.37 E-value=1.8e+02 Score=35.07 Aligned_cols=25 Identities=40% Similarity=0.636 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008271 102 KIRQEKAATKAQAVFRGYLARRAFR 126 (571)
Q Consensus 102 ~lr~ekAAI~IQAa~RGyLaRR~fr 126 (571)
++-..+||+.||.++|||.+|+.|.
T Consensus 939 lenkKkaavviqkmirgfiarrkfq 963 (1023)
T KOG0165|consen 939 LENKKKAAVVIQKMIRGFIARRKFQ 963 (1023)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777778877777776
No 31
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=21.96 E-value=1e+02 Score=23.11 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008271 107 KAATKAQAVFRGYLARRA 124 (571)
Q Consensus 107 kAAI~IQAa~RGyLaRR~ 124 (571)
-|+..||-.||-+..|+.
T Consensus 10 YAt~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 10 YATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478899999999988874
Done!