Query 008271
Match_columns 571
No_of_seqs 330 out of 1185
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 22:15:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 99.1 3.9E-10 1.3E-14 88.6 8.0 52 104-156 3-55 (58)
2 2dfs_A Myosin-5A; myosin-V, in 99.0 4.8E-10 1.6E-14 131.7 8.5 80 93-175 778-860 (1080)
3 1n2d_C IQ2 and IQ3 motifs from 98.9 3.4E-09 1.2E-13 80.0 7.1 42 106-147 3-47 (48)
4 2dfs_A Myosin-5A; myosin-V, in 98.8 5.2E-09 1.8E-13 123.0 9.1 71 104-175 766-837 (1080)
5 1n2d_C IQ2 and IQ3 motifs from 98.4 4.7E-07 1.6E-11 68.2 6.0 44 129-173 4-47 (48)
6 2ix7_C Myosin-5A; contractIle 98.1 3.1E-06 1E-10 66.2 5.7 44 129-175 6-49 (58)
7 1wdc_A Scallop myosin; calcium 97.7 9.3E-05 3.2E-09 59.1 7.3 44 104-147 4-51 (64)
8 2bl0_A Major plasmodial myosin 97.6 7.5E-05 2.6E-09 59.5 6.0 43 105-147 3-49 (63)
9 1wdc_A Scallop myosin; calcium 97.4 0.00027 9.3E-09 56.3 6.4 45 129-173 7-51 (64)
10 2bl0_A Major plasmodial myosin 97.4 0.00023 7.8E-09 56.7 5.9 45 129-173 5-49 (63)
11 1kk8_A Myosin heavy chain, str 97.4 0.00019 6.4E-09 82.8 6.8 46 103-148 776-825 (837)
12 2l53_B CAM, voltage-gated sodi 96.8 0.00078 2.7E-08 47.3 2.8 24 103-126 3-26 (31)
13 2kxw_B Sodium channel protein 96.7 0.001 3.5E-08 45.3 2.7 22 103-124 3-24 (27)
14 1i84_S Smooth muscle myosin he 96.6 0.0016 5.4E-08 77.4 5.8 43 105-147 791-837 (1184)
15 1kk8_A Myosin heavy chain, str 96.5 0.0039 1.3E-07 71.9 8.2 46 129-174 780-825 (837)
16 1i84_S Smooth muscle myosin he 95.6 0.018 6.1E-07 68.5 8.0 46 129-174 793-838 (1184)
17 3gn4_A Myosin-VI; unconvention 95.3 0.02 6.7E-07 53.4 5.5 19 129-147 46-64 (148)
18 4anj_A Unconventional myosin-V 93.3 0.017 6E-07 68.1 0.6 69 105-174 774-844 (1052)
19 1w7j_A Myosin VA; motor protei 89.2 0.27 9.1E-06 56.6 4.7 25 105-129 767-791 (795)
20 3gn4_A Myosin-VI; unconvention 83.5 3.9 0.00013 38.0 8.3 34 105-138 44-78 (148)
21 4dck_A Sodium channel protein 83.0 1.1 3.8E-05 42.4 4.6 28 100-127 124-151 (168)
22 2l53_B CAM, voltage-gated sodi 72.1 2.9 0.0001 29.2 2.9 19 129-147 7-25 (31)
23 2kxw_B Sodium channel protein 68.0 3 0.0001 28.3 2.2 17 129-145 7-23 (27)
24 4anj_A Unconventional myosin-V 67.6 5.5 0.00019 47.2 5.8 42 129-173 775-816 (1052)
25 1w7j_A Myosin VA; motor protei 56.4 10 0.00034 43.7 5.2 21 129-149 769-789 (795)
26 2ycu_A Non muscle myosin 2C, a 33.7 5.9 0.0002 46.6 -1.4 61 109-170 767-828 (995)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.06 E-value=3.9e-10 Score=88.56 Aligned_cols=52 Identities=25% Similarity=0.386 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008271 104 RQEKAATKAQAVFRGYLARRAFRAL-KGIIRLQALIRGHLVRRQAVATLGAMLG 156 (571)
Q Consensus 104 r~ekAAI~IQAa~RGyLaRR~fr~l-kaiVrLQAlvRG~lvRrq~~~~lr~~~A 156 (571)
+.+.||+.||++||||++|+.|..+ .+++.||++|||+++|+.|.. ++...+
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-~r~~~a 55 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKF-LRRTKA 55 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcC
Confidence 4678999999999999999999966 699999999999999999965 333333
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.98 E-value=4.8e-10 Score=131.70 Aligned_cols=80 Identities=26% Similarity=0.222 Sum_probs=59.7
Q ss_pred eeecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Q 008271 93 LQDASYDPEKIRQEKAATKAQAVFRGYLARRAFRA---LKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKV 169 (571)
Q Consensus 93 ~~~ar~r~e~lr~ekAAI~IQAa~RGyLaRR~fr~---lkaiVrLQAlvRG~lvRrq~~~~lr~~~AaVkIQA~iRg~~a 169 (571)
.+++..+..|.+...||+.||++||||++|+.|.. ..+++.||++|||+++|+.|.. ...+++.||+.+||+++
T Consensus 778 ~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~---lr~aai~IQs~~Rg~la 854 (1080)
T 2dfs_A 778 IRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQC---MRDATIALQALLRGYLV 854 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45555666677777888888888888888887763 3788888888888888888743 35677788888888877
Q ss_pred hhcccc
Q 008271 170 RHSDIG 175 (571)
Q Consensus 170 Rr~~~g 175 (571)
|+.+..
T Consensus 855 Rr~~~~ 860 (1080)
T 2dfs_A 855 RNKYQM 860 (1080)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776653
No 3
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.89 E-value=3.4e-09 Score=80.01 Aligned_cols=42 Identities=26% Similarity=0.368 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHH
Q 008271 106 EKAATKAQAVFRGYLARRAFRAL---KGIIRLQALIRGHLVRRQA 147 (571)
Q Consensus 106 ekAAI~IQAa~RGyLaRR~fr~l---kaiVrLQAlvRG~lvRrq~ 147 (571)
..+|+.||++||||++|+.|..+ .+++.||++|||+++|+.|
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 56899999999999999999855 4899999999999999876
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.82 E-value=5.2e-09 Score=123.03 Aligned_cols=71 Identities=25% Similarity=0.357 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccc
Q 008271 104 RQEKAATKAQAVFRGYLARRAFRAL-KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDIG 175 (571)
Q Consensus 104 r~ekAAI~IQAa~RGyLaRR~fr~l-kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVkIQA~iRg~~aRr~~~g 175 (571)
+...+|+.||++||||++|+.|+.+ .+++.||++|||+++|+.+.. ++...|+++||+.||+|++|+.|..
T Consensus 766 ~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-lr~~~AAi~IQs~~Rg~~~Rk~y~~ 837 (1080)
T 2dfs_A 766 KLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATF-LRRTRAAIIIQKFQRMYVVRKRYQC 837 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccc-cccchhHHHHHHHHhhHHHHHHHHH
Confidence 4467999999999999999999965 799999999999999999854 5678899999999999999998864
No 5
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.39 E-value=4.7e-07 Score=68.20 Aligned_cols=44 Identities=27% Similarity=0.307 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcc
Q 008271 129 KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSD 173 (571)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVkIQA~iRg~~aRr~~ 173 (571)
.+++.||+++||+++|+.+.. ++...++++||+.+||+++|+.|
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~-~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVND-EMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHhh
Confidence 689999999999999999955 45567999999999999999876
No 6
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.13 E-value=3.1e-06 Score=66.23 Aligned_cols=44 Identities=30% Similarity=0.393 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccc
Q 008271 129 KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDIG 175 (571)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVkIQA~iRg~~aRr~~~g 175 (571)
.+++.||+.|||+++|+.|.. ...+++.||+.+||+++|+.+..
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~~~---~r~aai~IQ~~~Rg~~aR~~~~~ 49 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRYLC---MQRAAITVQRYVRGYQARCYAKF 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999954 46799999999999999998864
No 7
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.69 E-value=9.3e-05 Score=59.07 Aligned_cols=44 Identities=41% Similarity=0.527 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHH
Q 008271 104 RQEKAATKAQAVFRGYLARRAFRAL----KGIIRLQALIRGHLVRRQA 147 (571)
Q Consensus 104 r~ekAAI~IQAa~RGyLaRR~fr~l----kaiVrLQAlvRG~lvRrq~ 147 (571)
+....++.||+++|||++|+.|..+ .|+..||..+|+++.++..
T Consensus 4 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 4 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4456788888888888888888744 5666788888888877654
No 8
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.64 E-value=7.5e-05 Score=59.49 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHH
Q 008271 105 QEKAATKAQAVFRGYLARRAFRAL----KGIIRLQALIRGHLVRRQA 147 (571)
Q Consensus 105 ~ekAAI~IQAa~RGyLaRR~fr~l----kaiVrLQAlvRG~lvRrq~ 147 (571)
....++.||+++|||++|+.|..+ .|+..||..+|+++.++..
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 345677788888888888877743 4555777777777766543
No 9
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.41 E-value=0.00027 Score=56.33 Aligned_cols=45 Identities=31% Similarity=0.268 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcc
Q 008271 129 KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSD 173 (571)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVkIQA~iRg~~aRr~~ 173 (571)
..++.|||.+||+++|+.|...+....|+..||..+|++..++..
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 568999999999999999988777788888999999999987754
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.41 E-value=0.00023 Score=56.68 Aligned_cols=45 Identities=16% Similarity=0.044 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcc
Q 008271 129 KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSD 173 (571)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVkIQA~iRg~~aRr~~ 173 (571)
..++.|||.+||+++|+.|...+....|+..||..+|++..++..
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 467899999999999999988777788888999999999987754
No 11
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=97.36 E-value=0.00019 Score=82.77 Aligned_cols=46 Identities=39% Similarity=0.474 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHH
Q 008271 103 IRQEKAATKAQAVFRGYLARRAFRAL----KGIIRLQALIRGHLVRRQAV 148 (571)
Q Consensus 103 lr~ekAAI~IQAa~RGyLaRR~fr~l----kaiVrLQAlvRG~lvRrq~~ 148 (571)
.+...+|+.||++||||++|+.|..+ .+++.||+.|||+++|+.+.
T Consensus 776 ~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 776 ERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 34556889999999999999999855 68899999999999998773
No 12
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=96.77 E-value=0.00078 Score=47.28 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008271 103 IRQEKAATKAQAVFRGYLARRAFR 126 (571)
Q Consensus 103 lr~ekAAI~IQAa~RGyLaRR~fr 126 (571)
.+++.+|+.||.+||+|+.|+.+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 367899999999999999998754
No 13
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=96.67 E-value=0.001 Score=45.34 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008271 103 IRQEKAATKAQAVFRGYLARRA 124 (571)
Q Consensus 103 lr~ekAAI~IQAa~RGyLaRR~ 124 (571)
.+++.||+.||.+||+|+.|+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3678999999999999998864
No 14
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.60 E-value=0.0016 Score=77.42 Aligned_cols=43 Identities=30% Similarity=0.351 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHH
Q 008271 105 QEKAATKAQAVFRGYLARRAFRAL----KGIIRLQALIRGHLVRRQA 147 (571)
Q Consensus 105 ~ekAAI~IQAa~RGyLaRR~fr~l----kaiVrLQAlvRG~lvRrq~ 147 (571)
...+|+.||++||||++|+.|..+ .+++.||+.||||+.|+.+
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 446899999999999999999854 6899999999999999765
No 15
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.54 E-value=0.0039 Score=71.95 Aligned_cols=46 Identities=30% Similarity=0.248 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhccc
Q 008271 129 KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDI 174 (571)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVkIQA~iRg~~aRr~~~ 174 (571)
..++.||++|||+++|++|...+....|++.||+.+|+|++|+.+.
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 6788999999999999999776556789999999999999988764
No 16
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.60 E-value=0.018 Score=68.51 Aligned_cols=46 Identities=24% Similarity=0.115 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhccc
Q 008271 129 KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDI 174 (571)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVkIQA~iRg~~aRr~~~ 174 (571)
..++.||++|||+++|+.|...+....+++.||+.||+|+.++.+.
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~ 838 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWP 838 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 6789999999999999999876556789999999999999998764
No 17
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=95.32 E-value=0.02 Score=53.40 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 008271 129 KGIIRLQALIRGHLVRRQA 147 (571)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~ 147 (571)
.++|.||+.+|||++|+++
T Consensus 46 ~~~i~iQktvR~~L~rkkh 64 (148)
T 3gn4_A 46 EACIKMQKTIRMWLCKRRH 64 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3455555555555555555
No 18
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=93.34 E-value=0.017 Score=68.07 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhhhhhccc
Q 008271 105 QEKAATKAQAVFRGYLARRAFRAL-KGIIRLQALIRGHLVRRQAVAT-LGAMLGLVKLQALVRGRKVRHSDI 174 (571)
Q Consensus 105 ~ekAAI~IQAa~RGyLaRR~fr~l-kaiVrLQAlvRG~lvRrq~~~~-lr~~~AaVkIQA~iRg~~aRr~~~ 174 (571)
...+|+.||+ +|||++|++|+.+ .+++.||.+.|+...|+.+... .+....+.-|++.+|++..|+.|.
T Consensus 774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~~~~w~~l~~~v~pll~~~~~~~~~r~~~ 844 (1052)
T 4anj_A 774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEAVSKGEELFTGVVPILVELDGDVNGHKFS 844 (1052)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhhhhhHHHHHHHHHhhhhh
Confidence 3467777775 7999999999966 7899999999998877665321 111223333455566666666653
No 19
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=89.24 E-value=0.27 Score=56.59 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 008271 105 QEKAATKAQAVFRGYLARRAFRALK 129 (571)
Q Consensus 105 ~ekAAI~IQAa~RGyLaRR~fr~lk 129 (571)
...+|+.||++||||++|++|+.++
T Consensus 767 l~~~~~~iQ~~~Rg~l~R~~~~~~r 791 (795)
T 1w7j_A 767 LRAACIRIQKTIRGWLMRKKYMRMR 791 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999888888664
No 20
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=83.47 E-value=3.9 Score=38.05 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHH
Q 008271 105 QEKAATKAQAVFRGYLARRAFR-ALKGIIRLQALI 138 (571)
Q Consensus 105 ~ekAAI~IQAa~RGyLaRR~fr-~lkaiVrLQAlv 138 (571)
...++|+||+++||||+|+.++ ...|+.++.++.
T Consensus 44 R~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3567888888888888888888 557777776664
No 21
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=83.03 E-value=1.1 Score=42.39 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008271 100 PEKIRQEKAATKAQAVFRGYLARRAFRA 127 (571)
Q Consensus 100 ~e~lr~ekAAI~IQAa~RGyLaRR~fr~ 127 (571)
....++..||+.||.+||.|+.|+.+..
T Consensus 124 ~~~~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 124 LRRKHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3456788899999999999988877653
No 22
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=72.07 E-value=2.9 Score=29.24 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 008271 129 KGIIRLQALIRGHLVRRQA 147 (571)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~ 147 (571)
.+++.||..||+|+.|+..
T Consensus 7 ~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 7 VSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5788899999999988754
No 23
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=67.96 E-value=3 Score=28.29 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 008271 129 KGIIRLQALIRGHLVRR 145 (571)
Q Consensus 129 kaiVrLQAlvRG~lvRr 145 (571)
.+++.||..||+|+.++
T Consensus 7 ~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 7 VSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56777888888887764
No 24
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=67.60 E-value=5.5 Score=47.24 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcc
Q 008271 129 KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSD 173 (571)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVkIQA~iRg~~aRr~~ 173 (571)
..++.+|..+||+++|++|.. ...+++.||.+.|+++.|+.+
T Consensus 775 ~~~~~~iq~~r~~l~r~~~~k---~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 775 DHLAELVKRVNHWLICSRWKK---VQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc
Confidence 344455556899999999954 456777777777776665543
No 25
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=56.38 E-value=10 Score=43.68 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 008271 129 KGIIRLQALIRGHLVRRQAVA 149 (571)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~ 149 (571)
..++.||+.|||+++|++|..
T Consensus 769 ~~~~~iQ~~~Rg~l~R~~~~~ 789 (795)
T 1w7j_A 769 AACIRIQKTIRGWLMRKKYMR 789 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888854
No 26
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=33.74 E-value=5.9 Score=46.65 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 008271 109 ATKAQAVFRGYLARRAFRAL-KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVR 170 (571)
Q Consensus 109 AI~IQAa~RGyLaRR~fr~l-kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVkIQA~iRg~~aR 170 (571)
|..++.+||+.+++..++.. .+++.||+++||+..++..... .......+||+.++....+
T Consensus 767 a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~~ekp-p~~~ek~rLeal~~~iqtk 828 (995)
T 2ycu_A 767 ANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKP-PKGQEVSELEAIYNSLQTK 828 (995)
T ss_dssp HHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHHHTHH-HHHHHHHHHCSSSCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHH
Confidence 34566677777766655533 6788889999888777766321 1223345666666655433
Done!