Query 008273
Match_columns 571
No_of_seqs 144 out of 408
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 22:17:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008273.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008273hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 5.5E-28 1.9E-32 216.2 13.3 119 349-470 4-127 (130)
2 4i1k_A B3 domain-containing tr 99.6 6.8E-15 2.3E-19 134.5 11.4 97 356-460 46-143 (146)
3 1yel_A AT1G16640; CESG, protei 99.4 9.4E-13 3.2E-17 112.8 10.3 93 356-458 8-100 (104)
4 1na6_A Ecorii, restriction end 88.8 0.46 1.6E-05 50.3 5.7 91 356-446 18-123 (404)
5 3o27_A Putative uncharacterize 67.0 6 0.00021 32.7 4.2 40 419-458 23-62 (68)
6 3lqh_A Histone-lysine N-methyl 56.5 5.1 0.00018 38.0 2.4 56 58-120 4-65 (183)
7 2lo3_A SAGA-associated factor 40.7 9.7 0.00033 29.1 1.2 16 77-92 13-28 (44)
8 2k75_A Uncharacterized protein 39.1 41 0.0014 28.6 5.1 49 394-463 40-91 (106)
9 2vb2_X Copper protein, cation 38.0 22 0.00074 29.9 3.1 24 432-455 59-82 (88)
10 2qcp_X Cation efflux system pr 37.3 23 0.00078 29.2 3.1 23 432-454 51-73 (80)
11 1pqh_A Aspartate 1-decarboxyla 30.1 3.4E+02 0.012 25.2 10.0 76 358-444 27-105 (143)
12 4dok_A Similarity to chalcone- 28.1 47 0.0016 31.9 4.0 38 424-461 127-164 (208)
13 3oug_A Aspartate 1-decarboxyla 26.9 3.5E+02 0.012 24.3 9.1 76 358-444 13-91 (114)
14 3mhs_E SAGA-associated factor 26.2 18 0.0006 31.8 0.6 13 79-91 73-85 (96)
15 1mvf_D MAZE protein, PEMI-like 25.2 54 0.0018 26.4 3.3 28 427-456 19-46 (82)
16 2l55_A SILB,silver efflux prot 24.0 54 0.0019 27.2 3.2 27 432-458 45-73 (82)
17 3e0e_A Replication protein A; 23.5 1.1E+02 0.0038 25.4 5.0 33 394-443 40-72 (97)
18 3ngh_A PDZ domain-containing p 22.9 77 0.0026 25.6 3.9 49 395-444 4-53 (106)
19 2c45_A Aspartate 1-decarboxyla 21.2 3.8E+02 0.013 24.8 8.4 77 358-445 10-89 (139)
20 2fe0_A SMP-1, small myristoyla 20.8 68 0.0023 29.4 3.4 66 386-458 33-98 (136)
21 2k50_A Replication factor A re 20.6 2.3E+02 0.0077 23.6 6.4 51 394-459 45-99 (115)
22 4doi_A Chalcone--flavonone iso 20.2 85 0.0029 31.1 4.2 38 423-461 143-180 (246)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=5.5e-28 Score=216.25 Aligned_cols=119 Identities=38% Similarity=0.717 Sum_probs=100.7
Q ss_pred CCCCCcccceEEEecccccCCCCCcEEeehhhhcccCCCCCC---CCCceEEEEeCCCCeEEEEEEEcCCCCCcceecc-
Q 008273 349 GDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLE- 424 (571)
Q Consensus 349 ~d~ns~~~~LF~KvLT~SDVgklgRLVIPK~~AEa~FP~L~~---~eG~~L~V~D~~GK~W~FRfr~wpNn~SR~YVL~- 424 (571)
+.......++|+|+||+|||++.+||+||+++|+.|||.++. .+++.|.++|.+|++|+|+|+|| +++++|+|+
T Consensus 4 ~~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~--~~~~~~~Lt~ 81 (130)
T 1wid_A 4 GSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW--NSSQSYVLTK 81 (130)
T ss_dssp ----CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEE--TTTTEEEEES
T ss_pred CCCCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEE--CCCCceEEcC
Confidence 455566788999999999999889999999999999999874 57899999999999999999999 567889996
Q ss_pred CchhhhhccCCCCCCEEEEEEec-CCCeEEEEEEeCCCCCCcchhhh
Q 008273 425 GVTPCIQNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSASASDQDNE 470 (571)
Q Consensus 425 GWs~FVRsK~LqaGDtVvF~R~e-p~GkL~IGvRRa~~~~~s~q~~~ 470 (571)
||..||++|+|++||+|+|++.+ .+++|+|++||+.... +||.+.
T Consensus 82 GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~-~~~~~~ 127 (130)
T 1wid_A 82 GWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD-LDASGP 127 (130)
T ss_dssp SHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS-SCC---
T ss_pred ChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC-ccccCC
Confidence 99999999999999999999986 3468999999998654 455543
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.58 E-value=6.8e-15 Score=134.52 Aligned_cols=97 Identities=25% Similarity=0.295 Sum_probs=82.2
Q ss_pred cceEEEecccccCCCCCcEEeehhhhcccCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCC
Q 008273 356 TPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQL 435 (571)
Q Consensus 356 ~~LF~KvLT~SDVgklgRLVIPK~~AEa~FP~L~~~eG~~L~V~D~~GK~W~FRfr~wpNn~SR~YVL~GWs~FVRsK~L 435 (571)
.+.|.|+||+|||.+..+|.||++.++.|||.. ...+.++|. |+.|.+++.|+. +++++..||..||++++|
T Consensus 46 ~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~----~~~i~L~~~-gk~W~v~~~~~~---~~~~ls~GW~~Fv~dn~L 117 (146)
T 4i1k_A 46 NPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGI----SGFIKVQLA-EKQWPVRCLYKA---GRAKFSQGWYEFTLENNL 117 (146)
T ss_dssp SCEEEEECCGGGSSTTCCEECCHHHHHHHCTTC----CSEEEEEET-TEEEEEEEEEET---TEEEECTTHHHHHHHTTC
T ss_pred CCEEEEEECchhcCCCcEEEeCHHHHHHhCCCC----CeEEEEEEC-CcEEEEEEEEeC---CcEEECCchHHHHHHcCC
Confidence 479999999999997678999999999999973 468888898 699999999983 355555699999999999
Q ss_pred CCCCEEEEEEecCCC-eEEEEEEeCC
Q 008273 436 QAGDIVTFSRLEPEG-KLVMGFRKAS 460 (571)
Q Consensus 436 qaGDtVvF~R~ep~G-kL~IGvRRa~ 460 (571)
++||+|+|...+... .|.|.+-|+.
T Consensus 118 ~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 118 GEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp CTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred CCCCEEEEEEecCCceEEEEEEEecc
Confidence 999999999986433 6788777764
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.40 E-value=9.4e-13 Score=112.76 Aligned_cols=93 Identities=14% Similarity=0.282 Sum_probs=75.2
Q ss_pred cceEEEecccccCCCCCcEEeehhhhcccCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCC
Q 008273 356 TPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQL 435 (571)
Q Consensus 356 ~~LF~KvLT~SDVgklgRLVIPK~~AEa~FP~L~~~eG~~L~V~D~~GK~W~FRfr~wpNn~SR~YVL~GWs~FVRsK~L 435 (571)
.+.|.|+|+++|. ..+|.||++.++.+.+.+ +..+.++|..|+.|.+++.++. .+.++..||.+||++++|
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~----~~~v~L~~~~G~~W~v~~~~~~---~~~~l~~GW~~Fv~~~~L 78 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF----PITVDLLDYSGRSWTVRMKKRG---EKVFLTVGWENFVKDNNL 78 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC----CSEEEEEETTSCEEEEEEEEET---TEEEECTTHHHHHHHHTC
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccC----CCEEEEECCCCCEEEEEEEEEC---CcEEEccChHHHHHHcCC
Confidence 3689999999994 369999999997766543 4689999999999999999872 344444699999999999
Q ss_pred CCCCEEEEEEecCCCeEEEEEEe
Q 008273 436 QAGDIVTFSRLEPEGKLVMGFRK 458 (571)
Q Consensus 436 qaGDtVvF~R~ep~GkL~IGvRR 458 (571)
++||.|+|.... +..+.|-+=+
T Consensus 79 ~~GD~lvF~~~~-~~~f~V~If~ 100 (104)
T 1yel_A 79 EDGKYLQFIYDR-DRTFYVIIYG 100 (104)
T ss_dssp CTTCEEEEEECS-SSEEEEEEEC
T ss_pred CCCCEEEEEEcC-CCeEEEEEEC
Confidence 999999998864 6677666544
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=88.82 E-value=0.46 Score=50.35 Aligned_cols=91 Identities=16% Similarity=0.167 Sum_probs=64.4
Q ss_pred cceEEEecccccCCC----CCcEEeehhhhcccCCCCCCC---C-CceEE--EEeCCCCeEEEEEEEcCC----CCCcce
Q 008273 356 TPLFEKMLSASDAGR----IGRLVLPKKCAEAYFPPISQP---E-GLPLK--VQDSKGKEWIFQFRFWPN----NNSRMY 421 (571)
Q Consensus 356 ~~LF~KvLT~SDVgk----lgRLVIPK~~AEa~FP~L~~~---e-G~~L~--V~D~~GK~W~FRfr~wpN----n~SR~Y 421 (571)
...|.|.|++.|++. ...+.+||...+.+||.|+.. + .+.+. +-|...-.+.++++|+-| ..+..|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 478999999999995 368999997688999988722 2 22333 233433455999999831 233468
Q ss_pred eccCch-hhhhccCCCCCCEEEEEEe
Q 008273 422 VLEGVT-PCIQNMQLQAGDIVTFSRL 446 (571)
Q Consensus 422 VL~GWs-~FVRsK~LqaGDtVvF~R~ 446 (571)
-|+.|. .+.=.+...+||.++|-+.
T Consensus 98 RLt~~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITRWGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEeecCCCCcccccCCCCCEEEEEEe
Confidence 888875 4555678899999988765
No 5
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=67.03 E-value=6 Score=32.73 Aligned_cols=40 Identities=10% Similarity=0.320 Sum_probs=33.6
Q ss_pred cceeccCchhhhhccCCCCCCEEEEEEecCCCeEEEEEEe
Q 008273 419 RMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRK 458 (571)
Q Consensus 419 R~YVL~GWs~FVRsK~LqaGDtVvF~R~ep~GkL~IGvRR 458 (571)
..|.++==.+++++.++++||.+...-++.+|++++.++|
T Consensus 23 etyYInIPaeI~kaLgIk~gD~fel~ve~kdgeIvLcykR 62 (68)
T 3o27_A 23 TTFYLLIPKDIAEALDIKPDDTFILNMEQKDGDIVLSYKR 62 (68)
T ss_dssp CCEEEEECHHHHHHTTCCTTCCEEEEEEEETTEEEEEEEE
T ss_pred eEEEEeCcHHHHHHhCCCCCCEEEEEEecCCCeEEEEehh
Confidence 3455554479999999999999999887779999999998
No 6
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=56.51 E-value=5.1 Score=37.97 Aligned_cols=56 Identities=20% Similarity=0.605 Sum_probs=44.1
Q ss_pred hh-ccccccccccccccccCCCCCccccccCCCccccchhhh-hhhhhhhh----cCCcceeccccccc
Q 008273 58 LC-VYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITS-VHAFTLLD----AGGIECMTCARKNV 120 (571)
Q Consensus 58 LC-~CgsayE~~~FCd~FH~~~sGWR~C~~C~KrlHCGCIaS-~~~~~lLD----~GGv~C~~C~r~s~ 120 (571)
.| .|+..|....| ++-|-.|..|..-.|--|+-- ...+++++ ...-.|..|.++..
T Consensus 4 ~CpiC~k~Y~~~~~-------~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 4 FCPLCDKCYDDDDY-------ESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp BCTTTCCBCTTCCT-------TCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCCCCcCccCCccc-------CCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 58 78888888765 577999999999999999843 34467774 34779999998764
No 7
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=40.69 E-value=9.7 Score=29.11 Aligned_cols=16 Identities=38% Similarity=0.910 Sum_probs=13.2
Q ss_pred CCCCccccccCCCccc
Q 008273 77 NASGWRCCESCGKRVH 92 (571)
Q Consensus 77 ~~sGWR~C~~C~KrlH 92 (571)
+..-+|.|+.|||+|-
T Consensus 13 ~~~~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 13 KPIQYRVCEKCGKPLA 28 (44)
T ss_dssp CCCCEEECTTTCCEEE
T ss_pred ccccchhhcccCCcch
Confidence 4567899999999873
No 8
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=39.14 E-value=41 Score=28.64 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=35.1
Q ss_pred ceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCCCCCCEEEEEEe---cCCCeEEEEEEeCCCCC
Q 008273 394 LPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRL---EPEGKLVMGFRKASSAS 463 (571)
Q Consensus 394 ~~L~V~D~~GK~W~FRfr~wpNn~SR~YVL~GWs~FVRsK~LqaGDtVvF~R~---ep~GkL~IGvRRa~~~~ 463 (571)
..+.+.|.+| +.+++.| +.. |++||+|.+... .-+|++.+.+-|.....
T Consensus 40 ~~~~l~DeTG---~I~~tlW--~~~----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~~I~ 91 (106)
T 2k75_A 40 YQGYIEDDTA---RIRISSF--GKQ----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSSRIE 91 (106)
T ss_dssp EEEEEECSSC---EEEEEEE--SSC----------------CCTTEEEEEEEEEEEEETTEEEEEECTTSEEE
T ss_pred EEEEEEcCCC---eEEEEEE--cCc----------------cCCCCEEEEEeeEEeEECCEEEEEECCcEEEE
Confidence 4788999999 6889999 222 999999999732 24677776666654433
No 9
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=37.98 E-value=22 Score=29.90 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=18.3
Q ss_pred ccCCCCCCEEEEEEecCCCeEEEE
Q 008273 432 NMQLQAGDIVTFSRLEPEGKLVMG 455 (571)
Q Consensus 432 sK~LqaGDtVvF~R~ep~GkL~IG 455 (571)
-.+|++||.|.|.-.+.+|.|.|-
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~it 82 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSLLQ 82 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEE
Confidence 478999999999776656666553
No 10
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=37.34 E-value=23 Score=29.20 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=17.8
Q ss_pred ccCCCCCCEEEEEEecCCCeEEE
Q 008273 432 NMQLQAGDIVTFSRLEPEGKLVM 454 (571)
Q Consensus 432 sK~LqaGDtVvF~R~ep~GkL~I 454 (571)
-.+|++||.|.|.-.+.+|.|.|
T Consensus 51 l~~lk~Gd~V~F~~~~~~~~~~i 73 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQQGNLSLL 73 (80)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEE
Confidence 57899999999977665666655
No 11
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=30.09 E-value=3.4e+02 Score=25.23 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=52.3
Q ss_pred eEEEecccccCCCCCcEEeehhhhcc--cCCCCCCCCCceEEEEeC-CCCeEEEEEEEcCCCCCcceeccCchhhhhccC
Q 008273 358 LFEKMLSASDAGRIGRLVLPKKCAEA--YFPPISQPEGLPLKVQDS-KGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQ 434 (571)
Q Consensus 358 LF~KvLT~SDVgklgRLVIPK~~AEa--~FP~L~~~eG~~L~V~D~-~GK~W~FRfr~wpNn~SR~YVL~GWs~FVRsK~ 434 (571)
+-.-+.|..|+...|.+.|..+-.++ .+| +..+.+.|. +|.++. .|.+..-..|+.--|.| .-++.
T Consensus 27 IHRatVT~AdL~Y~GSITID~dLldaAgIl~------~EkV~IvNvnNG~Rfe-TYvI~GerGSG~I~lNG----AAArl 95 (143)
T 1pqh_A 27 LHRVKVTHADLHYEGTCAIDQDFLDAAGILE------NEAIDIWNVTNGKRFS-TYAIAAERGSRIISVNG----AAAHC 95 (143)
T ss_dssp EEEEECCBCCSSSCCCEEEEHHHHHHHTCCT------TCEEEEEETTTCCEEE-EEEEEECTTCCCEECCG----GGGGT
T ss_pred hcceEEeccccccceeEEECHHHHHHcCCCC------CCEEEEEECCCCceEE-EEEEEccCCCceEEech----HHHcc
Confidence 44557899999999999999986554 567 578899998 777654 23333112344433444 45778
Q ss_pred CCCCCEEEEE
Q 008273 435 LQAGDIVTFS 444 (571)
Q Consensus 435 LqaGDtVvF~ 444 (571)
.++||.|+++
T Consensus 96 ~~~GD~VII~ 105 (143)
T 1pqh_A 96 ASVGDIVIIA 105 (143)
T ss_dssp CCTTCEEEEE
T ss_pred CCCCCEEEEE
Confidence 8999998875
No 12
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=28.06 E-value=47 Score=31.90 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=30.8
Q ss_pred cCchhhhhccCCCCCCEEEEEEecCCCeEEEEEEeCCC
Q 008273 424 EGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASS 461 (571)
Q Consensus 424 ~GWs~FVRsK~LqaGDtVvF~R~ep~GkL~IGvRRa~~ 461 (571)
....++.++..|++||+|.|.|..+.|.|.|.+.+...
T Consensus 127 ~~f~~~F~~~~~~~G~~I~~~~~p~~G~L~i~~s~~G~ 164 (208)
T 4dok_A 127 EKVVGFFQSKYFKANSVITYHFSAKDGICEIGFETEGK 164 (208)
T ss_dssp HHHHHHHHTCEECTTCEEEEEECSSSCCEEEEEECTTS
T ss_pred HHHHHHhccCCCCCCCEEEEEEeCCCCeEEEEEEeCCE
Confidence 45567778889999999999998656999999886543
No 13
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=26.85 E-value=3.5e+02 Score=24.31 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=51.2
Q ss_pred eEEEecccccCCCCCcEEeehhhhcc--cCCCCCCCCCceEEEEeC-CCCeEEEEEEEcCCCCCcceeccCchhhhhccC
Q 008273 358 LFEKMLSASDAGRIGRLVLPKKCAEA--YFPPISQPEGLPLKVQDS-KGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQ 434 (571)
Q Consensus 358 LF~KvLT~SDVgklgRLVIPK~~AEa--~FP~L~~~eG~~L~V~D~-~GK~W~FRfr~wpNn~SR~YVL~GWs~FVRsK~ 434 (571)
+-.-+.|..|+...|.+.|..+-.++ .+| +..+.+.|. +|.+|.= |.+..-..|+.--+.| .-++.
T Consensus 13 IHratVT~a~L~Y~GSitID~~Ll~aA~i~~------~E~V~I~NvnNG~Rf~T-YvI~GerGSg~I~lNG----AAAr~ 81 (114)
T 3oug_A 13 ISYATVTGKDLFYVGSITIDSEIMKQANIIE------NEKVQVVNLNNGERLET-YVIKGEPNSKTIALNG----PAARR 81 (114)
T ss_dssp EEEEECCEEESSCC-CEEEEHHHHHHTTCCT------TBEEEEEETTTCCEEEE-EEEEECTTSCCEEEEG----GGGGG
T ss_pred hcceEEecccccccceEEECHHHHHHcCCCc------CCEEEEEECCCCceEEE-EEEEccCCCCEEEeCC----HHHhc
Confidence 34557899999999999999886554 466 688999998 7876652 3333112344333444 45678
Q ss_pred CCCCCEEEEE
Q 008273 435 LQAGDIVTFS 444 (571)
Q Consensus 435 LqaGDtVvF~ 444 (571)
.+.||.|+++
T Consensus 82 ~~~GD~vII~ 91 (114)
T 3oug_A 82 CEIGDQLFII 91 (114)
T ss_dssp CCTTCEEEEE
T ss_pred cCCCCEEEEE
Confidence 8999998875
No 14
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=26.20 E-value=18 Score=31.75 Aligned_cols=13 Identities=46% Similarity=1.112 Sum_probs=11.7
Q ss_pred CCccccccCCCcc
Q 008273 79 SGWRCCESCGKRV 91 (571)
Q Consensus 79 sGWR~C~~C~Krl 91 (571)
.-.|-|+.|||+|
T Consensus 73 ~~YRvCn~CGkPI 85 (96)
T 3mhs_E 73 IQYRVCEKCGKPL 85 (96)
T ss_dssp CCCEEETTTCCEE
T ss_pred ccchhhhccCCce
Confidence 5689999999997
No 15
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=25.17 E-value=54 Score=26.39 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=22.6
Q ss_pred hhhhhccCCCCCCEEEEEEecCCCeEEEEE
Q 008273 427 TPCIQNMQLQAGDIVTFSRLEPEGKLVMGF 456 (571)
Q Consensus 427 s~FVRsK~LqaGDtVvF~R~ep~GkL~IGv 456 (571)
.++++..+|.+||.|.|... +|.++|.-
T Consensus 19 k~~~~~lgl~~gd~v~i~~~--~~~iii~p 46 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLV--DGKLIIEP 46 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEE--TTEEEEEE
T ss_pred HHHHHHcCCCCCCEEEEEEE--CCEEEEEE
Confidence 47899999999999999874 66777643
No 16
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=23.96 E-value=54 Score=27.16 Aligned_cols=27 Identities=26% Similarity=0.151 Sum_probs=18.6
Q ss_pred ccCCCCCCEEEEEEecCCC-eEEEE-EEe
Q 008273 432 NMQLQAGDIVTFSRLEPEG-KLVMG-FRK 458 (571)
Q Consensus 432 sK~LqaGDtVvF~R~ep~G-kL~IG-vRR 458 (571)
-.+|++||.|.|.-...+| .|.|- +++
T Consensus 45 l~~lk~Gd~V~F~~~~~~~g~~~it~i~~ 73 (82)
T 2l55_A 45 PQGLKAGDRVAFSFRLDPHGMATLVTVAP 73 (82)
T ss_dssp CSSCSTTCEEEEEEEEETTTEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEECCCCeEEEEEEEe
Confidence 4789999999987655444 66554 444
No 17
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=23.47 E-value=1.1e+02 Score=25.37 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=24.6
Q ss_pred ceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCCCCCCEEEE
Q 008273 394 LPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTF 443 (571)
Q Consensus 394 ~~L~V~D~~GK~W~FRfr~wpNn~SR~YVL~GWs~FVRsK~LqaGDtVvF 443 (571)
..+.+.|.+| ..+++.| .+.+.. .|++||+|.|
T Consensus 40 ~~~~l~DeTG---~I~~tlW-------------~~~~~~-~i~~Gdvv~i 72 (97)
T 3e0e_A 40 KSLFLKDDTG---SIRGTLW-------------NELADF-EVKKGDIAEV 72 (97)
T ss_dssp EEEEEEETTE---EEEEEEE-------------GGGGGC-CCCTTCEEEE
T ss_pred EEEEEECCCC---cEEEEEE-------------CCcccc-ccCCCCEEEE
Confidence 4678899988 6677777 333333 8999999999
No 18
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=22.90 E-value=77 Score=25.63 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=30.0
Q ss_pred eEEEEeCCCCeEEEEEEEcCCCCCcceecc-CchhhhhccCCCCCCEEEEE
Q 008273 395 PLKVQDSKGKEWIFQFRFWPNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFS 444 (571)
Q Consensus 395 ~L~V~D~~GK~W~FRfr~wpNn~SR~YVL~-GWs~FVRsK~LqaGDtVvF~ 444 (571)
.+.+....|..|-|....-+ .....++.. -...-+...+|++||+|+=.
T Consensus 4 ~v~l~~~~~~~~G~~l~~~~-~~~g~~V~~V~~~spA~~aGl~~GD~I~~i 53 (106)
T 3ngh_A 4 ESKLSKQEGQNYGFFLRIEK-DTDGHLIRVIEEGSPAEKAGLLDGDRVLRI 53 (106)
T ss_dssp EEEEECCTTCCCCCEEECCT-TCCSCEEECCCTTSHHHHTTCCTTCEEEEE
T ss_pred EEEEEeCCCCeeCEEEEEEe-CCCCEEEEEeCCCCHHHHcCCCCCCEEEEE
Confidence 34455556677777766542 223445544 33455667789999998754
No 19
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=21.19 E-value=3.8e+02 Score=24.81 Aligned_cols=77 Identities=14% Similarity=0.312 Sum_probs=52.6
Q ss_pred eEEEecccccCCCCCcEEeehhhhcc--cCCCCCCCCCceEEEEeC-CCCeEEEEEEEcCCCCCcceeccCchhhhhccC
Q 008273 358 LFEKMLSASDAGRIGRLVLPKKCAEA--YFPPISQPEGLPLKVQDS-KGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQ 434 (571)
Q Consensus 358 LF~KvLT~SDVgklgRLVIPK~~AEa--~FP~L~~~eG~~L~V~D~-~GK~W~FRfr~wpNn~SR~YVL~GWs~FVRsK~ 434 (571)
+-.-+.|..|+...|.+.|..+-.++ .+| +..+.+.|. +|.++. .|.+..-..|+.--+.| .-++.
T Consensus 10 IHRatVT~AdL~Y~GSITID~dLldaAgIl~------~EkV~IvNvnNG~Rfe-TYvI~GerGSG~I~lNG----AAArl 78 (139)
T 2c45_A 10 IHRATVTCADLHYVGSVTIDADLMDAADLLE------GEQVTIVDIDNGARLV-TYAITGERGSGVIGING----AAAHL 78 (139)
T ss_dssp EEEEECCCEESSSCCEEEEEHHHHHHTTCCS------SCCEEEEETTTCCEEE-ECEEEECTTTTCEEEES----STTTT
T ss_pred ccceEEeccccccceeeEECHHHHHHcCCCC------CCEEEEEECCCCceEE-EEEEEccCCCCEEEEch----HHHcc
Confidence 45668899999999999999986554 466 578889998 777554 23332112234333444 45678
Q ss_pred CCCCCEEEEEE
Q 008273 435 LQAGDIVTFSR 445 (571)
Q Consensus 435 LqaGDtVvF~R 445 (571)
.+.||.|+++-
T Consensus 79 ~~~GD~vII~a 89 (139)
T 2c45_A 79 VHPGDLVILIA 89 (139)
T ss_dssp SCTTCEEEEEE
T ss_pred CCCCCEEEEEE
Confidence 89999998864
No 20
>2fe0_A SMP-1, small myristoylated protein 1; beta sheet, protein transport, membrane protein; NMR {Leishmania major} SCOP: b.134.1.1
Probab=20.84 E-value=68 Score=29.36 Aligned_cols=66 Identities=15% Similarity=0.331 Sum_probs=43.3
Q ss_pred CCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCCCCCCEEEEEEecCCCeEEEEEEe
Q 008273 386 PPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRK 458 (571)
Q Consensus 386 P~L~~~eG~~L~V~D~~GK~W~FRfr~wpNn~SR~YVL~GWs~FVRsK~LqaGDtVvF~R~ep~GkL~IGvRR 458 (571)
|-++..+|+..++.|..++.|-|- |++..|.+.=--.|-..-.++++......+. ++|++.+.+--
T Consensus 33 ~cF~~~nGlLfRIv~~~~~~WaFY------NDT~~y~mhV~~~F~~~S~v~alg~t~l~~~-~~G~~~a~vvV 98 (136)
T 2fe0_A 33 KGFEKDNGLLFRIVNKKKKQWAYY------NDTTQYEMHVLVTFNEDCDIKALGKTKLEQQ-ENGEWVASVVV 98 (136)
T ss_dssp ESSSSTTCSEEEEEETTTTEEEEE------ECCSSEEEEEEEEEESSCCEEECTTCEEEEC-TTSEEEEEEEE
T ss_pred EcccCCCcEEEEEEecCCCEEEEE------eCCccEEEEEEEEECCCCceEECCceEEEEC-CCCCEEEEEEE
Confidence 333345799999999988999873 5666666544445555556777766555553 57776665553
No 21
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=20.63 E-value=2.3e+02 Score=23.61 Aligned_cols=51 Identities=14% Similarity=0.298 Sum_probs=34.1
Q ss_pred ceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCCCCCCEEEEEEec----CCCeEEEEEEeC
Q 008273 394 LPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLE----PEGKLVMGFRKA 459 (571)
Q Consensus 394 ~~L~V~D~~GK~W~FRfr~wpNn~SR~YVL~GWs~FVRsK~LqaGDtVvF~R~e----p~GkL~IGvRRa 459 (571)
..+.+.|.+| ..++++|. ... | ....|++||+|.|.-.. -+|.+-+.+-+.
T Consensus 45 ~~~~l~D~TG---~I~~t~w~--~~~------~----~~~~l~~G~vv~i~g~~v~~~f~g~~qL~~~~~ 99 (115)
T 2k50_A 45 ANVIIADDTG---ELRAVFWT--ENI------K----LLKKFREGDVIRIKDVNIRGGFGGRKEAHLMPR 99 (115)
T ss_dssp EEEEEEETTE---EEEEEEET--TGG------G----GGGTCCTTSEEEEEEEEECCCSSSSCEEEECTT
T ss_pred EEEEEEeCCC---eEEEEEeC--chh------h----hhhcCCCCCEEEEEeeEEccccCCeEEEEECCC
Confidence 6788999999 88899992 221 1 12469999999997643 345555544443
No 22
>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana}
Probab=20.24 E-value=85 Score=31.07 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=31.0
Q ss_pred ccCchhhhhccCCCCCCEEEEEEecCCCeEEEEEEeCCC
Q 008273 423 LEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASS 461 (571)
Q Consensus 423 L~GWs~FVRsK~LqaGDtVvF~R~ep~GkL~IGvRRa~~ 461 (571)
|.....+.+...|+.||+|.|.|. ++|.+.|.+.+...
T Consensus 143 L~~F~~~F~~~~l~kGs~I~~~~~-p~g~l~i~~s~~G~ 180 (246)
T 4doi_A 143 VEKFLEIFKEETFPPGSSILFALS-PTGSLTVAFSKDDS 180 (246)
T ss_dssp HHHHHHHHTTCEECTTCEEEEEEC-TTSEEEEEEESSSC
T ss_pred HHHHHHHhccCcCCCCCEEEEEEe-CCCcEEEEEecCCc
Confidence 345567778888999999999998 78999999986543
Done!