Query 008275
Match_columns 571
No_of_seqs 167 out of 1071
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 21:44:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02491 carotenoid 9,10(9',10 100.0 6E-119 1E-123 985.3 51.1 499 12-560 16-537 (545)
2 PLN02258 9-cis-epoxycarotenoid 100.0 5E-118 1E-122 979.7 50.2 482 17-560 78-584 (590)
3 COG3670 Lignostilbene-alpha,be 100.0 2E-117 3E-122 914.8 36.2 460 43-559 20-488 (490)
4 PF03055 RPE65: Retinal pigmen 100.0 3E-111 7E-116 923.7 39.9 468 46-559 1-486 (486)
5 PLN02969 9-cis-epoxycarotenoid 100.0 6E-105 1E-109 885.9 44.7 478 45-559 60-610 (610)
6 KOG1285 Beta, beta-carotene 15 100.0 7.9E-63 1.7E-67 534.3 30.6 462 62-560 37-576 (582)
7 KOG1285 Beta, beta-carotene 15 99.9 3.3E-26 7.1E-31 249.1 11.1 293 46-355 109-417 (582)
8 COG3823 Glutamine cyclotransfe 70.7 2.9 6.2E-05 40.9 2.1 36 182-217 96-132 (262)
9 PF13570 PQQ_3: PQQ-like domai 59.9 9 0.0002 26.6 2.5 28 178-205 13-40 (40)
10 PF06433 Me-amine-dh_H: Methyl 54.4 2.9E+02 0.0063 29.3 20.7 112 197-336 18-141 (342)
11 PRK00756 acyltransferase NodA; 38.1 24 0.00052 33.2 2.2 22 61-83 173-195 (196)
12 PF02239 Cytochrom_D1: Cytochr 35.3 1.7E+02 0.0036 31.3 8.5 71 440-545 49-119 (369)
13 PF10282 Lactonase: Lactonase, 33.9 3E+02 0.0064 28.8 10.2 95 186-286 48-161 (345)
14 TIGR02658 TTQ_MADH_Hv methylam 31.1 6.7E+02 0.015 26.7 25.8 112 196-334 27-149 (352)
15 PF05096 Glu_cyclase_2: Glutam 29.0 74 0.0016 32.4 4.3 37 181-217 94-131 (264)
16 KOG4105 6-pyruvoyl tetrahydrob 23.4 21 0.00046 31.1 -0.6 42 197-238 23-68 (141)
17 KOG0303 Actin-binding protein 20.1 1.5E+02 0.0033 31.8 4.6 63 177-252 230-293 (472)
No 1
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=5.9e-119 Score=985.31 Aligned_cols=499 Identities=31% Similarity=0.541 Sum_probs=417.9
Q ss_pred eeeccccchhhHHHHHHHHHhhhhhc---cCCCCCCCCCCcccccccccceecceEeecCCCCCCCCeEEeeCCCCCCCC
Q 008275 12 RISVPKTIKNSFVKLLDVFVDQMFEF---VDQPLLPSQRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLFGG 88 (571)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~~~~~fapv~e~~~~~~~~~V~G~IP~~l~~Gt~~RnGP~~~~~~ 88 (571)
....++.++.++...+|.+.+.+.++ ..+|..+++|||+|+.+|..+..++.|+|+||++| +|+|||||||+++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L-~Gt~~RNGPnp~~~~ 94 (545)
T PLN02491 16 VVVNPRPSKGLTSKAVDLLEKLIVKLMHDASQPLHYLSGNFAPVRDETPPVKDLPVRGHLPECL-NGEFVRVGPNPKFSP 94 (545)
T ss_pred eeccCchhhhhhHHHHHHHHHHHHhhccCCCCCcccccCCCcCccccCCcccCcEEEeeCCCcC-CeEEEEeCCCCCCCC
Confidence 34667788888888999999988765 44788889999999987765566789999999987 999999999987654
Q ss_pred CccccccCCccccccccCCCcEEEEEeecCCCCceeEEEEeeeecchhHHHHHhcCCCccCCcccCChhhhHHHHHH---
Q 008275 89 LKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWNVVYMNRHVESETFKQEKQRNRSSFLPAIEGDSLAILSAYLL--- 165 (571)
Q Consensus 89 ~~~~~~~~g~~~~H~FDGdGmlh~~~f~~g~~g~~~v~y~~R~V~T~~~~~e~~~g~~~~~~~~~~~~~~~~~~~~~--- 165 (571)
. +.+||||||||||+|+|++| +|+|+||||||++|++|+++|+.+|+. + + ++.++++.+.
T Consensus 95 ~---------~~~H~FDGDGMlha~~f~~G-----~a~y~~RfVrT~~~~~E~~ag~~~~~~-~-~-~~~g~~g~~~~~~ 157 (545)
T PLN02491 95 V---------AGYHWFDGDGMIHGMRIKDG-----KATYVSRYVKTSRLKQEEFFGGAKFMK-I-G-DLKGLFGLLMVNM 157 (545)
T ss_pred C---------CCCccccCCccEEEEEEcCC-----cEEEEeeeecccchhhhhhcCcccccc-c-c-cccccchhhhhhh
Confidence 2 46899999999999999987 799999999999999999999999864 1 1 2222222111
Q ss_pred hhhhc--CCc----cccccceeeEEECCEEEEEeeCCCceee---ecCCcceeeecccCCCCCCCCCCcceeeCCCCcEE
Q 008275 166 NLLRF--GKI----NKYISNTNIFEHAGKFYSVAENHMPQEI---DIFTLETLGNWDVNGAWNRPFTSHPKKASGTGELV 236 (571)
Q Consensus 166 ~~~r~--~~~----~~~~aNt~v~~~~g~LlAl~E~~~p~~i---Dp~TLeT~G~~d~~g~l~~~~tAHPk~Dp~tGel~ 236 (571)
..+|. +.. .+|+|||||++|+||||||||+|.||++ ||.||||+|++||+|+|..+||||||+||+||||+
T Consensus 158 ~~~r~~~~~~~~~~~~~~ANT~vi~~~grLlAl~E~g~Py~l~~~Dp~tLeT~G~~df~g~l~~~~TAHPk~DP~TGel~ 237 (545)
T PLN02491 158 QQLRAKLKVLDFSYGNGTGNTALIYHHGKLLALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTGEMF 237 (545)
T ss_pred hhhhccccccccccCCCCCceeEEEECCEEEEEEcCCCCeEecCCCCCCcceeeecccCCccCcccccCccCcCCCCCEE
Confidence 11111 111 1589999999999999999999999996 66999999999999999889999999999999999
Q ss_pred EEEecCCCCcEEEEEEcCCCCeeEeeEEEEcCccccccccccCCCeEEEeeCCeeecHhhhhcC-CCceeecCCCceEEE
Q 008275 237 IMGVDATKPFVEIGVISADGDKLVHKVDLKLSRCSLCHEIGITQRYNVFLDYPLSIDLTRLAFG-GPLIKYEHEGYAKIG 315 (571)
Q Consensus 237 ~f~~~~~~~~~~~~~~d~~G~~~~~~~~~~~~~~~~iHdfaiTeny~V~~~~p~~~~~~~~~~g-~~~~~~d~~~~tr~~ 315 (571)
+|+|+..+++++|+++|++|++. +.++++++.++|||||+|||||+||+++|+.+++.+|+.| ..++.|++++++||+
T Consensus 238 ~fgy~~~~p~~~y~~~~~~G~~~-~~v~i~l~~~~~~HDFaiTeny~Vf~~~Pl~~~~~~~~~~~~~~~~~d~~~~~r~g 316 (545)
T PLN02491 238 TFGYSHEPPYITYRVISKDGAMH-DPVPITISEPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKFIYTFDATKKARFG 316 (545)
T ss_pred EEEecCCCCcEEEEEECCCCcCc-ceeEeecCCCceeeeeEecCCEEEEEECCcccCHHHHhhCCCceeEECCCCCcEEE
Confidence 99999987999999999999865 5688999999999999999999999999999999999876 567899999999999
Q ss_pred EeeCCCCC-CCeEEEEcCCceeeeeeeeeecCCeEEEEEeeecCCCCCCCCCCCcchhhhhhhcchhccccccCCCCCCC
Q 008275 316 IMPRYGDA-DSVKWFDVEPNCTFHIINCFEDGDEVIVWGCRALESIIPGPDLGLNKFEWFSKKFRHAELADESVDTSPDD 394 (571)
Q Consensus 316 vipR~~~~-~~v~~~~~~~~~~fH~~NA~Ee~~~ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 394 (571)
||||+++. +.++||++|+||+||++|||||+|+||+|+|++++..+..... .+. . ..+
T Consensus 317 VipR~~~~~~~irw~e~~~~f~fH~~NA~Ee~~~Ivvd~~~~~~~~~~~~~~----------~~~-~----------~~~ 375 (545)
T PLN02491 317 VLPRYAKDELMIRWFELPNCFIFHNANAWEEEDEVVLITCRLENPDLDMVNG----------KVK-E----------KLE 375 (545)
T ss_pred EEECCCCCCCceEEEEcCCceEeecCCccccCCeEEEEEeccCCCccccccc----------ccc-c----------ccc
Confidence 99998643 5799999999999999999999999999999997643210000 000 0 001
Q ss_pred CCCcceEEEEEEeCCCCCeeeeeecCCCccccCCCcCCCCCCCCccEEEEeeeccccccCCCCCCcceeeeeeccCC---
Q 008275 395 VPLFSRVYEWRLNMQNGDVKETNLSGTKVSMDFPMINGGYTGIKNKYGYTQIVDSIASSASGMPKYGGLAKLSFEEP--- 471 (571)
Q Consensus 395 ~~~~~~L~r~~idl~~g~~~~~~L~~~~~~~EfP~In~~~~Gr~yry~Y~~~~~~~~~~~~~~~~~~~l~K~D~~~~--- 471 (571)
...++|+|||||+++|+++++.|+ +.++|||+||+++.||+|||+|+++.+. .+++++|+|+|++++
T Consensus 376 -~~~~~l~r~ridl~tg~~~~~~l~--~~~~EfP~In~~~~Grk~ry~Y~~~~~~-------~~~~~gl~K~D~~t~~~~ 445 (545)
T PLN02491 376 -NFGNELYEMRFNMKTGAASQKKLS--ASAVDFPRVNESYTGRKQRYVYGTILDS-------IAKVTGIIKFDLHAEPET 445 (545)
T ss_pred -ccCceEEEEEEECCCCceeeeccC--CcccccCccCHHHCCCcccEEEEeccCC-------ccCcCeEEEEEecccccC
Confidence 234789999999999999998886 5799999999999999999999986542 346899999999863
Q ss_pred -CCCccccceeeEEEEcCCCeecccceeecCCCC--CCCCCeEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCCCC
Q 008275 472 -DNTESEELIKVEYHKFEENIFCTGGAFVPKGRG--VEEDDGWIITFLHNEDTNISQVYIIDTKKFTDEPVAKITLSHRV 548 (571)
Q Consensus 472 -~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~--~~EDDG~Ll~~V~d~~~~~S~l~VlDA~~~~~gpVArv~LP~~v 548 (571)
+.......+.++.||+|+++|+|||+||||+++ .+|||||||++|||+++++|+|+||||++|++|||||++||+||
T Consensus 446 g~~~~~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~~~~EDDG~ll~~V~d~~~~~S~l~VlDAk~~~~~pVA~v~LP~rV 525 (545)
T PLN02491 446 GKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHRV 525 (545)
T ss_pred CccccccccceeEEEEcCCCccccCCEEecCCCCCCcccCCcEEEEEEEcCCCCcceEEEEeCCCCCCCeeEEEECCCCC
Confidence 210000001245789999999999999999854 58999999999999999999999999999999999999999999
Q ss_pred CCCcCcccccCc
Q 008275 549 PYGFHGAFMSIP 560 (571)
Q Consensus 549 P~GfHG~w~~~~ 560 (571)
||||||+|+++.
T Consensus 526 P~GfHG~fv~~~ 537 (545)
T PLN02491 526 PYGFHAFFVTEE 537 (545)
T ss_pred CCCccccCcCHH
Confidence 999999999974
No 2
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=5e-118 Score=979.66 Aligned_cols=482 Identities=29% Similarity=0.552 Sum_probs=410.2
Q ss_pred ccchhhHHHHHHHHHhhhhhc---------cCCCCCCCCCCcccccccccceecceEeecCCCCCCCCeEEeeCCCCCCC
Q 008275 17 KTIKNSFVKLLDVFVDQMFEF---------VDQPLLPSQRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLFG 87 (571)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~---------~~~p~~~~~~~fapv~e~~~~~~~~~V~G~IP~~l~~Gt~~RnGP~~~~~ 87 (571)
+-++.+++..+|.+.+.+..+ ..+|...++|||+|++||.+. .++.|+|+||++| +|+|||||||+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~faPv~ee~~~-~~l~V~G~IP~~L-~Gty~RNGPnp~f~ 155 (590)
T PLN02258 78 NPLQRAAAAALDAVESALVSHLERQHPLPKTADPAVQIAGNFAPVPEQPVR-HNLPVTGRIPDCI-DGVYVRNGANPLFE 155 (590)
T ss_pred CcchhhHHHHHHHHHHHHhhhccccCCCCCCCCcceeccCCCcCccccCCc-ccceEEeeCCCCC-CeEEEEeCCCCCCC
Confidence 567778888899999887655 224456779999999999854 5799999999987 99999999998765
Q ss_pred CCccccccCCccccccccCCCcEEEEEeecCCCCceeEEEEeeeecchhHHHHHhcCCCccCCcccCChh-hhHHHHHHh
Q 008275 88 GLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWNVVYMNRHVESETFKQEKQRNRSSFLPAIEGDSL-AILSAYLLN 166 (571)
Q Consensus 88 ~~~~~~~~~g~~~~H~FDGdGmlh~~~f~~g~~g~~~v~y~~R~V~T~~~~~e~~~g~~~~~~~~~~~~~-~~~~~~~~~ 166 (571)
+. ..+||||||||||+|+|++| +|+|+||||||++|++|+++|+++|++.+....+ .++.+..+.
T Consensus 156 p~---------~~~H~FDGDGMvhav~f~dG-----~a~y~~RfVrT~~~~~E~~agr~l~~~~~g~~~~~~g~~r~~~~ 221 (590)
T PLN02258 156 PV---------AGHHLFDGDGMVHAVRIGNG-----SASYACRFTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLF 221 (590)
T ss_pred CC---------CCCccccCCceEEEEEECCC-----eEEEEeeeecchhHHHHHhcCCcccccccccccccccccccchh
Confidence 32 45899999999999999987 7999999999999999999999998743322211 122221111
Q ss_pred hhh--cCCc----cccccceeeEEECCEEEEEeeCCCceeeecC---CcceeeecccCCCCCCCCCCcceeeCCCCcEEE
Q 008275 167 LLR--FGKI----NKYISNTNIFEHAGKFYSVAENHMPQEIDIF---TLETLGNWDVNGAWNRPFTSHPKKASGTGELVI 237 (571)
Q Consensus 167 ~~r--~~~~----~~~~aNt~v~~~~g~LlAl~E~~~p~~iDp~---TLeT~G~~d~~g~l~~~~tAHPk~Dp~tGel~~ 237 (571)
..| ++.. .+|+|||||++|+||||||||+|.||++|++ ||||+|++||+|+|..+||||||+||.||||++
T Consensus 222 ~~r~~~~~~d~~~~~~~ANT~vv~~~grLlAL~E~g~Py~l~~d~~~TLeT~G~~df~g~l~~~ftAHPKvDP~TGel~~ 301 (590)
T PLN02258 222 YARGLFGLVDASRGTGVANAGLVYFNGRLLAMSEDDLPYQVRITGDGDLETVGRYDFDGQLDSSMIAHPKVDPVTGELFA 301 (590)
T ss_pred hccccccccccccccCCCceeEEEECCEEEEEEcCCCceEecCCCCCCcccCcccccCCccCcccccCceEcCCCCeEEE
Confidence 112 1211 2589999999999999999999999999764 999999999999998899999999999999999
Q ss_pred EEecC-CCCcEEEEEEcCCCCeeEeeEEEEcCccccccccccCCCeEEEeeCCeeecHhhhhcCCCceeecCCCceEEEE
Q 008275 238 MGVDA-TKPFVEIGVISADGDKLVHKVDLKLSRCSLCHEIGITQRYNVFLDYPLSIDLTRLAFGGPLIKYEHEGYAKIGI 316 (571)
Q Consensus 238 f~~~~-~~~~~~~~~~d~~G~~~~~~~~~~~~~~~~iHdfaiTeny~V~~~~p~~~~~~~~~~g~~~~~~d~~~~tr~~v 316 (571)
|+|+. .+|+++|+++|++|++. +.++|+++.++|||||||||||+||+++|+.+|+.+|+.|+.++.|++++++||+|
T Consensus 302 f~y~~~~~p~l~~~~~d~~G~~~-~~~~i~lp~p~~~HDFaiTenY~Vf~d~Pl~~~~~~~~~g~~~~~~d~~~~srfgV 380 (590)
T PLN02258 302 LSYDVVKKPYLKYFRFSPDGEKS-PDVEIPLDQPTMMHDFAITENFVVIPDQQVVFKLSEMIRGGSPVVYDKNKTSRFGV 380 (590)
T ss_pred EEEeccCCCcEEEEEECCCCCEE-eeEEeeCCCCccccceeccCceEEEEccCceEcHHHHhhCCCceEECCCCCcEEEE
Confidence 99996 46899999999999854 67789999999999999999999999999999999999998999999999999999
Q ss_pred eeCCCC-CCCeEEEEcCCceeeeeeeeeec--CCeEEEEEeeecCCCCCCCCCCCcchhhhhhhcchhccccccCCCCCC
Q 008275 317 MPRYGD-ADSVKWFDVEPNCTFHIINCFED--GDEVIVWGCRALESIIPGPDLGLNKFEWFSKKFRHAELADESVDTSPD 393 (571)
Q Consensus 317 ipR~~~-~~~v~~~~~~~~~~fH~~NA~Ee--~~~ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 393 (571)
|||+++ .+.++||++|+||+||++||||| +|+||+|+|++.+.... +. .+ .
T Consensus 381 ipR~~~~~~~irwfe~p~~f~fH~~NA~Ee~~~~~VVvd~~~~~~~~~~---------------~~--~~---------~ 434 (590)
T PLN02258 381 LPKNATDASEIQWVEVPDCFCFHLWNAWEEPETDEVVVIGSCMTPPDSI---------------FN--ES---------D 434 (590)
T ss_pred EECCCCCCCceEEEecCCcEEEecccccccCCCCeEEEEEecccChhhh---------------cc--cc---------c
Confidence 999963 45799999999999999999996 35799999998653100 00 00 0
Q ss_pred CCCCcceEEEEEEeCCCCCeeeeeecC-CCccccCCCcCCCCCCCCccEEEEeeeccccccCCCCCCcceeeeeeccCCC
Q 008275 394 DVPLFSRVYEWRLNMQNGDVKETNLSG-TKVSMDFPMINGGYTGIKNKYGYTQIVDSIASSASGMPKYGGLAKLSFEEPD 472 (571)
Q Consensus 394 ~~~~~~~L~r~~idl~~g~~~~~~L~~-~~~~~EfP~In~~~~Gr~yry~Y~~~~~~~~~~~~~~~~~~~l~K~D~~~~~ 472 (571)
+ ...++|+|||||+++|+++++.|.. ++.++|||+||+++.||+|||+|+++.++ ++.+++|+|+|+++++
T Consensus 435 ~-~~~~~L~r~ridl~tg~~~~~~l~~~~~~~~EFP~In~~~~Grk~Ry~Y~~~~~~-------~~~~~givK~Dl~tg~ 506 (590)
T PLN02258 435 E-SLRSVLSEIRLNLRTGESTRRPIISGEQVNLEAGMVNRNLLGRKTRYAYLAIAEP-------WPKVSGFAKVDLSTGE 506 (590)
T ss_pred c-cccceEEEEEEECCCCceeeeEeecCCCcccccceECHHHCCCccceEEEeccCC-------CCCCCeEEEEECCCCc
Confidence 1 3457899999999999998887753 12689999999999999999999986542 4568999999999886
Q ss_pred CCccccceeeEEEEcCCCeecccceeecCCCCCC-CCCeEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCCCCCCC
Q 008275 473 NTESEELIKVEYHKFEENIFCTGGAFVPKGRGVE-EDDGWIITFLHNEDTNISQVYIIDTKKFTDEPVAKITLSHRVPYG 551 (571)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~-EDDG~Ll~~V~d~~~~~S~l~VlDA~~~~~gpVArv~LP~~vP~G 551 (571)
++.||+|+++|+|||+||||+++++ |||||||++|||+++++|+|+||||++|++ |||++||+|||+|
T Consensus 507 ---------~~~~~~g~g~~~gEPvFVPr~~~~~~EDDGylls~V~d~~~~~SeL~IlDA~~l~~--VArv~LP~rVP~G 575 (590)
T PLN02258 507 ---------VKKYIYGEGRYGGEPFFVPRGSGSEAEDDGYILAFVHDEEKGKSELQVVNAVNLEL--EATVKLPSRVPYG 575 (590)
T ss_pred ---------EEEEECCCCccccCCEeccCCCCCcccCCcEEEEEEEECCCCceEEEEEeCCCCcc--cEEEECCCCCCCc
Confidence 4679999999999999999999874 999999999999999999999999999985 9999999999999
Q ss_pred cCcccccCc
Q 008275 552 FHGAFMSIP 560 (571)
Q Consensus 552 fHG~w~~~~ 560 (571)
|||+|++..
T Consensus 576 FHG~wv~~~ 584 (590)
T PLN02258 576 FHGTFISAE 584 (590)
T ss_pred ccccccCHH
Confidence 999999964
No 3
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.6e-117 Score=914.78 Aligned_cols=460 Identities=32% Similarity=0.548 Sum_probs=396.7
Q ss_pred CCCCCCcccccccccceecceEeecCCCCCCCCeEEeeCCCCCCCCCccccccCCccccccccCCCcEEEEEeecCCCCc
Q 008275 43 LPSQRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGS 122 (571)
Q Consensus 43 ~~~~~~fapv~e~~~~~~~~~V~G~IP~~l~~Gt~~RnGP~~~~~~~~~~~~~~g~~~~H~FDGdGmlh~~~f~~g~~g~ 122 (571)
..|+|+|+|+.+|.+...+..|+|+||++| +|+|||||||++.. .|...+||||||||||+|.|.+|+
T Consensus 20 ~~w~g~~a~~~~E~~~t~L~~V~G~iPa~L-~Gtl~RNGP~~l~~--------~g~~~~HwFDGDGMI~~v~f~~gg--- 87 (490)
T COG3670 20 PYWTGGFAPVRTEFDATDLTDVEGRIPADL-DGTLYRNGPNPLHR--------GGIATYHWFDGDGMIHAVAFRDGG--- 87 (490)
T ss_pred hhhhccCCccceeecccccceeeecCCccc-CceEEccCCCcccc--------CCccccCCccCCCeEEEEEecCCC---
Confidence 457899999999987766666999999998 99999999998864 456789999999999999999963
Q ss_pred eeEEEEeeeecchhHHHHHhcCCCccCCcccCChhhhHHHHHHhhhhcCCccccccceeeEEECCEEEEEeeCCCceeee
Q 008275 123 WNVVYMNRHVESETFKQEKQRNRSSFLPAIEGDSLAILSAYLLNLLRFGKINKYISNTNIFEHAGKFYSVAENHMPQEID 202 (571)
Q Consensus 123 ~~v~y~~R~V~T~~~~~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~aNt~v~~~~g~LlAl~E~~~p~~iD 202 (571)
+|+|+||||||.+|.+|++||+++|++.+...|.+.. ..+ + -...||.|||||+.|+++|+||||+|.||+||
T Consensus 88 -~a~yrnrfVrT~g~~ae~~Ag~~l~~g~~~~~p~~~~---~~~--~-~~~lkn~aNTsVi~~~~~LlalwEgG~pyrLd 160 (490)
T COG3670 88 -RATYRNRFVRTQGYLAENEAGKPLWGGLGETQPPGVR---PHS--R-TGDLKNAANTSVIMHGDELLALWEGGSPYRLD 160 (490)
T ss_pred -ceEEEEEEEeeceeehhhhcCcceeccccccCCCCcC---cCc--c-ccccccCCccceEeehhHHHHHHhcCCccccC
Confidence 8999999999999999999999999876554543211 101 0 12468999999999999999999999999999
Q ss_pred cCCcceeeecccCC-CCCCCCCCcceeeCCCCcEEEEEecCCCCcEEEEEEcCCCCeeEeeEEEEcCccccccccccCCC
Q 008275 203 IFTLETLGNWDVNG-AWNRPFTSHPKKASGTGELVIMGVDATKPFVEIGVISADGDKLVHKVDLKLSRCSLCHEIGITQR 281 (571)
Q Consensus 203 p~TLeT~G~~d~~g-~l~~~~tAHPk~Dp~tGel~~f~~~~~~~~~~~~~~d~~G~~~~~~~~~~~~~~~~iHdfaiTen 281 (571)
|+||+|+|..+|+| .+.++||||||+||+||||+||||+...++++|+++|++|+.+ +.+.+++|.+.|||||+||+|
T Consensus 161 p~tL~TlG~~~~~g~~~g~~fsAHPkvDp~tgel~~fg~s~~~~~l~~~~v~~~G~l~-r~~~i~lpg~~~~HDFa~T~~ 239 (490)
T COG3670 161 PDTLETLGKEDFGGDPLGGPFSAHPKVDPDTGELFNFGYSFALPYLTYYVVDADGELR-RTVDIPLPGPPMMHDFAITEN 239 (490)
T ss_pred hhHhhhcChhhcCCCCCCCccccCccCCCCCceEEEEEeccCCCeeEEEEECCCCcEE-EeeeeecCCCccceeeeecCc
Confidence 99999999999999 5667899999999999999999999988899999999999965 677899999999999999999
Q ss_pred eEEEeeCCeeecH-hhhhc---CCCceeecCCCceEEEEeeCCCCCCCeEEEEcCCceeeeeeeeeecC-CeEEEEEeee
Q 008275 282 YNVFLDYPLSIDL-TRLAF---GGPLIKYEHEGYAKIGIMPRYGDADSVKWFDVEPNCTFHIINCFEDG-DEVIVWGCRA 356 (571)
Q Consensus 282 y~V~~~~p~~~~~-~~~~~---g~~~~~~d~~~~tr~~vipR~~~~~~v~~~~~~~~~~fH~~NA~Ee~-~~ivvd~~~~ 356 (571)
|+||+++|+.+|+ .+++. ...++.|+|+.+|||+||||.++ +.+||||+++||+||+.||||++ +.|.+|.|++
T Consensus 240 y~If~~~Pv~~d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g~-~~irwfE~~p~fvfH~~NAye~~d~~v~~d~~~~ 318 (490)
T COG3670 240 YLIFFDLPVTFDPVPRLLGRPADGHAMRWRPELPTRILVLPREGD-SEIRWFEAEPGFVFHFLNAYEEGDEVVLVDFLRY 318 (490)
T ss_pred eEEEEeCcccccchhHHhcCcccccceeecCCCCcEEEEEccCCC-CceeEEecCCeEEEEecceeecCCCcEEEEEEee
Confidence 9999999999995 44443 25789999999999999999974 68999999999999999999997 5677899999
Q ss_pred cCCCCCCCCCCCcchhhhhhhcchhccccccCCCCCCCCCCcceEEEEEEeCCCCCeeeeeecCCCccccCCCcCCCCCC
Q 008275 357 LESIIPGPDLGLNKFEWFSKKFRHAELADESVDTSPDDVPLFSRVYEWRLNMQNGDVKETNLSGTKVSMDFPMINGGYTG 436 (571)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~r~~idl~~g~~~~~~L~~~~~~~EfP~In~~~~G 436 (571)
++........ .+.. ++.-.....++|+||+|||++|++.++.+. ++++|||+||+++.|
T Consensus 319 ~~~~~~~~~~--------------~~~~-----~g~~~~~a~~~L~R~~lnl~tg~v~~~~~~--~r~~EFP~in~~~~G 377 (490)
T COG3670 319 DDFSQTLDTL--------------GEGP-----GGDFRTLAPPRLHRWTLNLKTGKVAEEQLD--DRACEFPRINPRYVG 377 (490)
T ss_pred cccccccccc--------------cccc-----cccccccCCCcceEEEEccccchhHHHhhh--hhhcccCccChhhcC
Confidence 8752111100 0000 010011235899999999999999888887 689999999999999
Q ss_pred CCccEEEEeeeccccccCCCCCCcce---eeeeeccCCCCCccccceeeEEEEcCCCeecccceeecCCCCCCCCCeEEE
Q 008275 437 IKNKYGYTQIVDSIASSASGMPKYGG---LAKLSFEEPDNTESEELIKVEYHKFEENIFCTGGAFVPKGRGVEEDDGWII 513 (571)
Q Consensus 437 r~yry~Y~~~~~~~~~~~~~~~~~~~---l~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~EDDG~Ll 513 (571)
++|||+|++...+ +.+.+++ |+|+|+++++ .+.+.+++++|++||+|||||++++|||||||
T Consensus 378 ~p~RY~Y~~~~rp------~~~l~~g~~~l~k~D~~tg~---------~~~~~~g~~~y~~E~vfvPrpg~~~EdDGwLl 442 (490)
T COG3670 378 QPYRYTYMSGARP------GTFLFQGLQTLAKHDLETGT---------SQVYSFGPRGYGSEPVFVPRPGSSAEDDGWLL 442 (490)
T ss_pred CceEEEEEecccC------CccchhhcceeEEEeccCCc---------EEEEecCCCCcccccccccCCCCCcCCCcEEE
Confidence 9999999985543 2334444 9999999997 46789999999999999999999999999999
Q ss_pred EEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCCCCCCCcCcccccC
Q 008275 514 TFLHNEDTNISQVYIIDTKKFTDEPVAKITLSHRVPYGFHGAFMSI 559 (571)
Q Consensus 514 ~~V~d~~~~~S~l~VlDA~~~~~gpVArv~LP~~vP~GfHG~w~~~ 559 (571)
++|||.+.+.|+|+||||+++++|||||+.||++||+||||.|++.
T Consensus 443 ~~vyd~~~~~Sel~v~DA~~~~~epIa~l~Lp~~vP~gfHG~w~~~ 488 (490)
T COG3670 443 TLVYDGDRHASELLVFDAQRVTAEPIARLALPQRVPYGFHGNWVPT 488 (490)
T ss_pred EEEEecCCCcceEEEEecccCCCCcceEEecccccccccccccccc
Confidence 9999999999999999999999999999999999999999999985
No 4
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=3.2e-111 Score=923.70 Aligned_cols=468 Identities=33% Similarity=0.577 Sum_probs=345.1
Q ss_pred CCCcccccccccceecceEeecCCCCCCCCeEEeeCCCCCCCCCccccccCCccccccccCCCcEEEEEeecCCCCceeE
Q 008275 46 QRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWNV 125 (571)
Q Consensus 46 ~~~fapv~e~~~~~~~~~V~G~IP~~l~~Gt~~RnGP~~~~~~~~~~~~~~g~~~~H~FDGdGmlh~~~f~~g~~g~~~v 125 (571)
+|+|+|+++|......+.|+|+||++| +|+|||||||+++. ..+.+++||||||||||+|+|++| +|
T Consensus 1 ~g~f~~~~~E~~~~~~~~v~G~iP~~L-~G~~~RnGP~~~~~-------~~~~~~~H~FDGdGmv~~~~f~~g-----~v 67 (486)
T PF03055_consen 1 SGGFAPVTEEVPDPEDLEVEGEIPSWL-DGTLYRNGPGPFEV-------IGGRRYNHWFDGDGMVHAFRFDDG-----RV 67 (486)
T ss_dssp SGCGS---SEE-EEEC-EEEE---TT--EEEEEEEEBEESE--------ETTEE-SCGGGSEBEEEEEEEETT-----EE
T ss_pred CCCCCCCccccCCccccEEeeeCCCcC-CCeeEEEcCccccc-------CCCcccccccCCCCEEEEEEECCC-----Cc
Confidence 589999998874455699999999976 99999999998861 134578999999999999999987 89
Q ss_pred EEEeeeecchhHHHHHhcCCCccCCccc----CChhhhHHHHHHhhhhcCCccccccceeeEEECCEEEEEeeCCCceee
Q 008275 126 VYMNRHVESETFKQEKQRNRSSFLPAIE----GDSLAILSAYLLNLLRFGKINKYISNTNIFEHAGKFYSVAENHMPQEI 201 (571)
Q Consensus 126 ~y~~R~V~T~~~~~e~~~g~~~~~~~~~----~~~~~~~~~~~~~~~r~~~~~~~~aNt~v~~~~g~LlAl~E~~~p~~i 201 (571)
+|+||||+|+.|++|+++|+.+|.+.+. .+|+.+++ ...........+|+|||||++|+||||||||+|.||+|
T Consensus 68 ~y~~R~v~T~~~~~e~~~g~~~~~g~~gt~~~~~~~~~~~--~~~~~~~~~~~~~~aNt~v~~~~g~llAl~E~g~p~~l 145 (486)
T PF03055_consen 68 TYRNRFVRTEGYKAEREAGRRLYRGEFGTVPLPDPCRNIF--RFPMPFFRGKPKNNANTNVIPHGGRLLALWEGGPPYEL 145 (486)
T ss_dssp EEEEEE---HHHHHHHHHTSS-SC-TTTCTTCSTHHHHTC--HHTTS--GGGB-----SEEEEETTEEEEE-TTSEEEEE
T ss_pred eeEEEEeCcHHHHHHHhcCCceecccccccccCchhhhhh--hhccccccccCCCCceeeeEEECCEEEEEEcCCCCEEe
Confidence 9999999999999999999988865432 25554432 00001122356899999999999999999999999999
Q ss_pred ecCCcceeeecccCCCCC-CCCCCcceeeCCCCcEEEEEecCCC---CcEEEEEEcCCCCeeEeeEEE-EcCcccccccc
Q 008275 202 DIFTLETLGNWDVNGAWN-RPFTSHPKKASGTGELVIMGVDATK---PFVEIGVISADGDKLVHKVDL-KLSRCSLCHEI 276 (571)
Q Consensus 202 Dp~TLeT~G~~d~~g~l~-~~~tAHPk~Dp~tGel~~f~~~~~~---~~~~~~~~d~~G~~~~~~~~~-~~~~~~~iHdf 276 (571)
||+||||+|.+||+|++. .+||||||+||+||++|+|+++.++ +.++++++|++|+++. ..+. +++.++|||||
T Consensus 146 Dp~TLeT~g~~~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~iHdf 224 (486)
T PF03055_consen 146 DPDTLETLGPFDFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLTVYEIDPDGKKIH-RVPSFPLPRPSYIHDF 224 (486)
T ss_dssp ETTTCEEEEEEEGGGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEEEEEEE-TTSEEEE-EEEESCCCS-B-----
T ss_pred chhHhhhcCcccccccccCcccccCceEcccCCcEEEEEEEeccCCCCcEEEEEEcCccceeE-EeeeccCCCCcccccc
Confidence 999999999999999998 6899999999999999999998653 7899999999997553 3445 88999999999
Q ss_pred ccCCCeEEEeeCCeeecHhhhhcCC---CceeecCCCceEEEEeeCCCCCCCeEEEEcCCceeeeeeeeeecCC---eEE
Q 008275 277 GITQRYNVFLDYPLSIDLTRLAFGG---PLIKYEHEGYAKIGIMPRYGDADSVKWFDVEPNCTFHIINCFEDGD---EVI 350 (571)
Q Consensus 277 aiTeny~V~~~~p~~~~~~~~~~g~---~~~~~d~~~~tr~~vipR~~~~~~v~~~~~~~~~~fH~~NA~Ee~~---~iv 350 (571)
+|||||+||+++|+.+|+.+++.|. .++.|+|+++++|+||||+++...++||++++||+||++||||++| +||
T Consensus 225 ~vT~~Y~V~~~~P~~~~~~~~~~g~~~~~~~~~~p~~~t~~~VipR~~~~~~v~~~~~~~~~~~H~~NAyE~~dg~~~iv 304 (486)
T PF03055_consen 225 AVTENYVVFPDNPLRFDPERLLLGGSPIDCLKWDPERPTRFHVIPRDGGKSPVRWFEAPPFFVFHFVNAYEDDDGGGEIV 304 (486)
T ss_dssp EE-SSEEEEEE-SEEE-HHHHHTTCCTGGCEEE-TTS-EEEEEEETTTSCCCEEEEEETTCEEEEEEEEEEETTT-TEEE
T ss_pred cccCceEEEEECCeEECHHHHhhCCcccceEEECCCCCeEEEEEECcCCCceeEEEecCChhhccccceeecCCCceEEE
Confidence 9999999999999999999999887 7999999999999999999755789999999999999999999976 999
Q ss_pred EEEeeecCCCCCCCCCCCcchhhhhhhcchhccccccCCCCCCCCCCcceEEEEEEeCC--CCCeeeeeecCCCc-cccC
Q 008275 351 VWGCRALESIIPGPDLGLNKFEWFSKKFRHAELADESVDTSPDDVPLFSRVYEWRLNMQ--NGDVKETNLSGTKV-SMDF 427 (571)
Q Consensus 351 vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~r~~idl~--~g~~~~~~L~~~~~-~~Ef 427 (571)
+|+|+|++..+... +....+.... ........++|+||+||++ +++++.+.|+ +. ++||
T Consensus 305 ~d~~~~~~~~~~~~-------------~~~~~~~~~~---~~~~~~~~~~l~R~~idl~~~~~~~~~~~l~--~~~~~Ef 366 (486)
T PF03055_consen 305 LDACRYDDPEFLDS-------------FYLDNLRPDG---MDFNSDSPGRLRRYRIDLDSKTGRVSEEPLD--DGNPCEF 366 (486)
T ss_dssp EEEEEECSSS-CGC-------------SCHHHHCC-H---HHCCCS-EEEEEEEEEETT--TCEEEEEEEE--TTEEEEE
T ss_pred EEEeecCCcccccc-------------cchhcccccc---cccccCCCceEEEEEEccccccceeEHhHhc--cCCCccc
Confidence 99999988654311 1112221100 0001156789999999999 8889888888 44 7999
Q ss_pred CCcCCCCCCCCccEEEEeeeccccccCCCCCCcceeeeeeccCCCCCccccceeeEEEEcCCCeecccceeecCCCCCCC
Q 008275 428 PMINGGYTGIKNKYGYTQIVDSIASSASGMPKYGGLAKLSFEEPDNTESEELIKVEYHKFEENIFCTGGAFVPKGRGVEE 507 (571)
Q Consensus 428 P~In~~~~Gr~yry~Y~~~~~~~~~~~~~~~~~~~l~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~E 507 (571)
|+||+++.|++|||+|+++...... ....+++|+|+|+++++ ++.|+++++++++||+|||||++++|
T Consensus 367 P~in~~~~g~~~ry~Y~~~~~~~~~---~~~~~~~l~k~D~~tg~---------~~~~~~~~~~~~~EpvFVPr~~~~~E 434 (486)
T PF03055_consen 367 PRINPRYSGRPYRYVYAVGMDPERS---PGFPFNGLVKVDLETGE---------VQRWSFGPGCFPGEPVFVPRPGGAEE 434 (486)
T ss_dssp EEE-GGGTTS--SEEEEEEECSCTS------EEEEEEEEETTTTE---------EEEEE-TTTEEE--EEEEE-TTS-ST
T ss_pred ceeCcccCCCcccEEEEEeecccCC---cCcCCCEEEEEeccccc---------ceEEECCCCceecceEeccCCCCCCC
Confidence 9999999999999999876553211 12468999999999885 46788999999999999999999999
Q ss_pred CCeEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCCCCCCCcCcccccC
Q 008275 508 DDGWIITFLHNEDTNISQVYIIDTKKFTDEPVAKITLSHRVPYGFHGAFMSI 559 (571)
Q Consensus 508 DDG~Ll~~V~d~~~~~S~l~VlDA~~~~~gpVArv~LP~~vP~GfHG~w~~~ 559 (571)
||||||++|+|.++++|+|+||||++|++|||||++||++||+||||+|+++
T Consensus 435 dDG~Ll~~v~~~~~~~s~l~VlDA~~l~~GPvAr~~lP~~vP~gfHG~w~~~ 486 (486)
T PF03055_consen 435 DDGYLLSVVYDSDTNRSELLVLDAKDLEEGPVARVELPHRVPYGFHGSWVPE 486 (486)
T ss_dssp T-EEEEEEEEETTTTCEEEEEEETTTTCE--EEEEEESS---S-SEEEEEE-
T ss_pred CceEEEEEEEECCCCccEEEEEeCCCCCcCceEEEECCCCCCCCccccccCC
Confidence 9999999999999999999999999999999999999999999999999974
No 5
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=6.1e-105 Score=885.90 Aligned_cols=478 Identities=23% Similarity=0.380 Sum_probs=374.1
Q ss_pred CCCCcccccccc-cceecceEeecCCCCCCCCeEEeeCCCCCCCCCccccccCCccccccccCCCcEEEEEeecCCCCce
Q 008275 45 SQRNFAPVDALR-EAVLVTNIDGEIPEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSW 123 (571)
Q Consensus 45 ~~~~fapv~e~~-~~~~~~~V~G~IP~~l~~Gt~~RnGP~~~~~~~~~~~~~~g~~~~H~FDGdGmlh~~~f~~g~~g~~ 123 (571)
|+++|+|+.+|. +++.+.+|+|+||++|++|||||||||+++.+ +.+++||||||||||+|+|++|+ +
T Consensus 60 ~~~~f~~~~~E~~~~~~l~~V~G~IP~~L~~GtlyRnGPg~~~~~--------~~~~~HwFDGdGmlh~f~f~~G~---~ 128 (610)
T PLN02969 60 YQFLFVSQRSETKDPVRLRVVEGAIPSDFPSGTYYLAGPGLFTDD--------HGSTVHPLDGHGYLRAFHIDGGD---R 128 (610)
T ss_pred hhhhhcCChhhcCCccccceEEecCCchhcCCEEEEecCCcccCC--------CCCccccCCCCceEEEEEEcCCC---e
Confidence 368899999887 56665579999999654999999999987643 22468999999999999999862 3
Q ss_pred eEEEEeeeecchhHHHHHhcCCCccCCcccCChhhhHH--HHHHhhhhcCCccccccceeeEEECCEEEEEeeCCCceee
Q 008275 124 NVVYMNRHVESETFKQEKQRNRSSFLPAIEGDSLAILS--AYLLNLLRFGKINKYISNTNIFEHAGKFYSVAENHMPQEI 201 (571)
Q Consensus 124 ~v~y~~R~V~T~~~~~e~~~g~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~aNt~v~~~~g~LlAl~E~~~p~~i 201 (571)
+|+|+||||||++|++|+++|+.+++. ...+|...+. ..+.| ....+|+|||||++|+|+||||||+|.||+|
T Consensus 129 ~v~y~nRfVrT~~~~~E~~ag~~~~~~-~~~~pfs~~~~~~~~~~----~~~~kn~ANT~V~~~gg~LlAl~E~g~P~~l 203 (610)
T PLN02969 129 PVQYSARYVKTEAKKEEHDPETRTWRF-TYRGPFSVLKGGKRVGN----VKVMKNVANTSVLKWGGRLLCLWEGGEPYEI 203 (610)
T ss_pred EEEEEeeeeccHHHHHHHHhCCcceee-eeccchhcccCCCCccc----ccccccCCCcceeeeCCEEEEecCCCCCeEc
Confidence 699999999999999999999887641 1122211110 00000 1235899999999999999999999999999
Q ss_pred ecCCcceeeeccc-----------------------------CCCCC---CCCCCcceeeCCCCcEEEEEecCC-----C
Q 008275 202 DIFTLETLGNWDV-----------------------------NGAWN---RPFTSHPKKASGTGELVIMGVDAT-----K 244 (571)
Q Consensus 202 Dp~TLeT~G~~d~-----------------------------~g~l~---~~~tAHPk~Dp~tGel~~f~~~~~-----~ 244 (571)
||+||||+|.+|| .|.+. .+||||||+||.||++++|+|+.+ +
T Consensus 204 DP~TLeT~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~p~~~ftAHpK~DP~tg~lv~f~~~~~~~~~~~ 283 (610)
T PLN02969 204 DSGTLETIGRFDLAPDDDSSKDDRLQGSDAWDLAARLLKPILTGVFKMPKKRLLSHYKIDGRRNRLLVVTCNAEDMLLPR 283 (610)
T ss_pred CcCccceeecccccccccccccccccccccccccccccccccccccccCCccccccCCcCCCCCCEEEEEeccccccCCC
Confidence 9999999999998 34443 368999999999999999999762 4
Q ss_pred CcEEEEEEcCCCCeeEeeEEEEcCccccccccccCCCeEEEeeCCeeecHhhhh---cCC----CceeecCCCce-EEEE
Q 008275 245 PFVEIGVISADGDKLVHKVDLKLSRCSLCHEIGITQRYNVFLDYPLSIDLTRLA---FGG----PLIKYEHEGYA-KIGI 316 (571)
Q Consensus 245 ~~~~~~~~d~~G~~~~~~~~~~~~~~~~iHdfaiTeny~V~~~~p~~~~~~~~~---~g~----~~~~~d~~~~t-r~~v 316 (571)
+.++++++|++|+++ +.+++++|.++|||||+|||||+||+++|+++|+.+++ .|. .+|.|+|++++ +|+|
T Consensus 284 ~~~~~y~~d~~G~~~-~~~~~~~p~~~~iHDfaiTeny~Vf~~~P~~~d~~~~l~~~~G~~~~~~~l~wdp~~~t~~~~V 362 (610)
T PLN02969 284 SNFTFYEFDADFKLV-QRKEFKLDDHLMIHDWAFTDTHYVLLANRVKLDVPGSLLAMAGLSPMISALAVDPSRPSSPVYL 362 (610)
T ss_pred ceeEEEEECCCCCEe-cceeecCCCcceeeeeeccCCEEEEEECceecCHHHHHHHhhcCCCchheeEECCCCCccEEEE
Confidence 689999999999865 56789999999999999999999999999999998654 343 45899999996 8999
Q ss_pred eeCCCCC--CCeEE---EEcC-CceeeeeeeeeecC---C--eEEEEEee--ecCCCCCCCCCCCcchhhhhhhcchhcc
Q 008275 317 MPRYGDA--DSVKW---FDVE-PNCTFHIINCFEDG---D--EVIVWGCR--ALESIIPGPDLGLNKFEWFSKKFRHAEL 383 (571)
Q Consensus 317 ipR~~~~--~~v~~---~~~~-~~~~fH~~NA~Ee~---~--~ivvd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l 383 (571)
|||+++. +.++| +++| +||+||++|||||+ | +|++|+|+ |++..+.. ... ..|....+.. .+
T Consensus 363 ipR~~~~~~~~~~W~v~~e~~~~~f~fH~~NAfEe~~~~g~~~Ivvd~~~~~~~~~~~~~-~~~---~~~~~~~~~~-~~ 437 (610)
T PLN02969 363 LPRFPEKEAGGRDWRVPVEVPSQLWLIHVGNAYEERDDRGNLRIQLHASACSYQWFSFHR-MFG---YDWQNKKLDP-SV 437 (610)
T ss_pred EECcCCCcccceeeeeEEeeCCCeEEEeccceeecCCCCCceEEEEEEeccccccccccc-ccc---ccccccccCc-ch
Confidence 9999753 57899 9998 59999999999963 3 49999974 54432210 000 0011000000 00
Q ss_pred ccccCCCCCCCCCCcceEEEEEEeCC-CCCe---eeeeecC-CCccccCCCcCCCCCCCCccEEEEeeeccccccCCCCC
Q 008275 384 ADESVDTSPDDVPLFSRVYEWRLNMQ-NGDV---KETNLSG-TKVSMDFPMINGGYTGIKNKYGYTQIVDSIASSASGMP 458 (571)
Q Consensus 384 ~~~~~~~~~~~~~~~~~L~r~~idl~-~g~~---~~~~L~~-~~~~~EfP~In~~~~Gr~yry~Y~~~~~~~~~~~~~~~ 458 (571)
.. ..... ...++|+||+||+. +|++ +.+.|.. .+.++|||+||+++.||+|||+|+++.+.... .....
T Consensus 438 ~~----~~~~~-~~~~~l~r~~idl~~~g~~~~~~~~~l~~~~~~~~EFP~In~~~~Gr~~ry~Y~~~~~~~~~-~~~~~ 511 (610)
T PLN02969 438 MN----NAKGK-ELLPHLVQVSIDLDRTGDCRSCDVEPLSNQWEKPADFPVINPSFSGQKNEYTYAAAASGSRK-TLPHF 511 (610)
T ss_pred hc----ccCcc-cccceEEEEEEeCCcCCccccccceeeccccccccccCccChhHCCCcceEEEEeeecCCCc-ccccC
Confidence 00 00001 23578999999996 6765 3466641 24689999999999999999999987642111 00122
Q ss_pred CcceeeeeeccCCCCCccccceeeEEEEcCCCeecccceeecCC---CCCCCCCeEEEEEEEeCCCCeeEEEEEeCCCCC
Q 008275 459 KYGGLAKLSFEEPDNTESEELIKVEYHKFEENIFCTGGAFVPKG---RGVEEDDGWIITFLHNEDTNISQVYIIDTKKFT 535 (571)
Q Consensus 459 ~~~~l~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp---~~~~EDDG~Ll~~V~d~~~~~S~l~VlDA~~~~ 535 (571)
.+++|+|+|+++++ ++.|++|+++|++|||||||+ ++++|||||||++|+|.++++|+|+||||++|+
T Consensus 512 ~~~~l~K~D~~tg~---------~~~w~~g~~~~~~EPvFVPr~~~p~~~~EDDG~Ll~~v~d~~~~~S~LvILDAk~~~ 582 (610)
T PLN02969 512 PFDSVVKLDVPDGS---------ARSWSTGARRFVGEPVFVPRKSSQGGGEEDDGYVLVVEYAVSDERCYLVILDAKRIG 582 (610)
T ss_pred CcCeEEEEECCCCC---------EEEEEeCCCCcccCCEEecCCCCCCCCccCCcEEEEEEEECCCCceEEEEEeCCCCc
Confidence 57999999999886 467888999999999999994 678999999999999999999999999999999
Q ss_pred CC--ceEEEEcCCCC--CCCcCcccccC
Q 008275 536 DE--PVAKITLSHRV--PYGFHGAFMSI 559 (571)
Q Consensus 536 ~g--pVArv~LP~~v--P~GfHG~w~~~ 559 (571)
+| ||||++||++| |+||||+|++.
T Consensus 583 eg~~PVAri~LP~~v~~P~GfHG~w~~~ 610 (610)
T PLN02969 583 ERDAVVAKLEVPKHLTFPMGFHGFWADE 610 (610)
T ss_pred ccCceeEEEECCcccCCCccccccccCC
Confidence 96 99999999998 99999999873
No 6
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.9e-63 Score=534.33 Aligned_cols=462 Identities=26% Similarity=0.380 Sum_probs=354.4
Q ss_pred ceEeecCCCCCCCCeEEeeCCCCCCCCCccccccCCccccccccCCCcEEEEEeecCCCCceeEEEEeeeecchhHHHHH
Q 008275 62 TNIDGEIPEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWNVVYMNRHVESETFKQEK 141 (571)
Q Consensus 62 ~~V~G~IP~~l~~Gt~~RnGP~~~~~~~~~~~~~~g~~~~H~FDGdGmlh~~~f~~g~~g~~~v~y~~R~V~T~~~~~e~ 141 (571)
+.+.|.||+ |++|+++||||+.+..+. ..++|||||-+++|+++|.+| +++|++||++|+.|+...
T Consensus 37 ~~~~g~ip~-wL~g~~lrn~pg~~~~g~--------~~~~h~fd~~~~~~~~~~~dg-----~~~~~~~~~~s~~y~~~~ 102 (582)
T KOG1285|consen 37 CTVKGSIPK-WLDGTLLRNGPGLFTVGE--------EKYNHLFDGPALLHAFHFLDG-----RVYYSSRYLESDPYKKTV 102 (582)
T ss_pred cccccccCc-cccccccCCCCcccccCc--------ccccccccchhhhhheeecCC-----eEEEEeeecccCCccccc
Confidence 788999999 669999999999876443 267999999999999999998 699999999999999987
Q ss_pred hcCCCccC---Ccc-cCChhhhHHHHHHhhhhcCCccccccceeeEEE-CCEEEEEeeCCCceeeecCCcceeeecccCC
Q 008275 142 QRNRSSFL---PAI-EGDSLAILSAYLLNLLRFGKINKYISNTNIFEH-AGKFYSVAENHMPQEIDIFTLETLGNWDVNG 216 (571)
Q Consensus 142 ~~g~~~~~---~~~-~~~~~~~~~~~~~~~~r~~~~~~~~aNt~v~~~-~g~LlAl~E~~~p~~iDp~TLeT~G~~d~~g 216 (571)
...+.+.+ +.. .+++|.+++.+++..++.+...+|+||+++.+. |++|||.+|....++||+.||+|+..++|.+
T Consensus 103 ~p~r~v~~~f~~~~~~pd~~~~~~s~~~~~~~~g~~~rd~aN~~f~pv~g~~~~~gtet~~~~ki~~~tl~t~~~~~~~k 182 (582)
T KOG1285|consen 103 DPNRIVSGEFAPVAEFPDPCKNIFSGFFPEFRNGESIRDNANPNFTPVGGHHLYAGTETPHAVKIDPGTLETTYKVRFTK 182 (582)
T ss_pred ccceeeeccccccCCCCCccCcceeeeeeecccccccccCCCcceeecCCCeeEecCCCceeEEecCcccceeEeecccc
Confidence 77776643 333 568888777666655555656689999999999 8899999999999999999999999999998
Q ss_pred CC-C-CCCCCcceeeCCCCcEEE-EEec-CCCC---cEEEEEEcCCCCee-------EeeEEE-----EcCccccccccc
Q 008275 217 AW-N-RPFTSHPKKASGTGELVI-MGVD-ATKP---FVEIGVISADGDKL-------VHKVDL-----KLSRCSLCHEIG 277 (571)
Q Consensus 217 ~l-~-~~~tAHPk~Dp~tGel~~-f~~~-~~~~---~~~~~~~d~~G~~~-------~~~~~~-----~~~~~~~iHdfa 277 (571)
.+ . ..++|||++|+ .|++++ +|.. ++.. .++.......|..+ .....+ ..+.|.|||+|+
T Consensus 183 ~~v~~~~~gah~~~d~-~G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G 261 (582)
T KOG1285|consen 183 TLVQEHTAGAHPHPDE-IGTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFG 261 (582)
T ss_pred ceeeeeecccCCcccC-cccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEEeecC
Confidence 43 2 35789999999 599999 7765 3322 23333322222110 000111 367899999999
Q ss_pred cCCCeEEEeeCCeeecHhhhhc-------C---CCceeecCCCceEEEEeeCCCCCC-CeEEEEcCCceeeeeeeeeecC
Q 008275 278 ITQRYNVFLDYPLSIDLTRLAF-------G---GPLIKYEHEGYAKIGIMPRYGDAD-SVKWFDVEPNCTFHIINCFEDG 346 (571)
Q Consensus 278 iTeny~V~~~~p~~~~~~~~~~-------g---~~~~~~d~~~~tr~~vipR~~~~~-~v~~~~~~~~~~fH~~NA~Ee~ 346 (571)
+||||+|+++.|+++++.+++. | ..+++|-|.....++++.+.+.+. .++ ..+++++|||.||||++
T Consensus 262 ~tenyi~~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~--~~~~~~t~hh~na~eed 339 (582)
T KOG1285|consen 262 DTENYIGRFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVE--IFPSFPTFHHDNAFEED 339 (582)
T ss_pred CccceEeEecCCcccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCcce--eccCcceEEEeeeeccc
Confidence 9999999999999999998863 2 235689999999999999987432 233 22348999999999999
Q ss_pred CeEEEEEeeecCCCCCCCCCC---------------------Ccchhhhhhhc--c-h--hccccccC----------C-
Q 008275 347 DEVIVWGCRALESIIPGPDLG---------------------LNKFEWFSKKF--R-H--AELADESV----------D- 389 (571)
Q Consensus 347 ~~ivvd~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~--~-~--~~l~~~~~----------~- 389 (571)
+.||+|.|++.+......+.+ ...+.|....- . . .++..... .
T Consensus 340 g~vi~D~~~~~~~~~~~~~~~p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~~~~~~e~~~~~~~~~v~~~~~s 419 (582)
T KOG1285|consen 340 GCVVPDLCVYFDLSEMIRDTSPLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFHLWNNWEKKPYDWEVVVIGSCMS 419 (582)
T ss_pred CceEEEEEEEechhhhhcccceeecccccccccccccccCCcccceEEEeccccccccchhhhcccCCCceEEeecccCC
Confidence 999999999987541110000 00111211000 0 0 01110000 0
Q ss_pred ------CCCCCCCCcceEEEEEEeCCCCCeeeeeecCCCccccCCCcCCCCCCCCccEEEEeeeccccccCCCCCCccee
Q 008275 390 ------TSPDDVPLFSRVYEWRLNMQNGDVKETNLSGTKVSMDFPMINGGYTGIKNKYGYTQIVDSIASSASGMPKYGGL 463 (571)
Q Consensus 390 ------~~~~~~~~~~~L~r~~idl~~g~~~~~~L~~~~~~~EfP~In~~~~Gr~yry~Y~~~~~~~~~~~~~~~~~~~l 463 (571)
.+..+ ....+|...|+++.+|...++.+.. ..++|+++||..+.||+|||+|+++.+. +++.+++
T Consensus 420 ~~~~i~~~~de-~~~~~l~e~r~~~~tg~~~~~~~~~-~~nl~~~~in~~~~Gkk~ryvY~ai~~~-------~p~~~g~ 490 (582)
T KOG1285|consen 420 STSTIFRESDE-LLGNRLEEIRLNLKTGLEFPRPVIP-KINLDFGMINRSYLGKKYRYVYGAILDP-------WPKVSGI 490 (582)
T ss_pred ccchhhccccc-chhceeeeeeecccccccccceeec-ccccccccccceeecccceEEEEEecCC-------ccCCCeE
Confidence 00011 2346788899999998877766653 3589999999999999999999987652 6788999
Q ss_pred eeeeccCCCCCccccceeeEEEEcCCCeecccceeecCCCCCCCCCeEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEE
Q 008275 464 AKLSFEEPDNTESEELIKVEYHKFEENIFCTGGAFVPKGRGVEEDDGWIITFLHNEDTNISQVYIIDTKKFTDEPVAKIT 543 (571)
Q Consensus 464 ~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~EDDG~Ll~~V~d~~~~~S~l~VlDA~~~~~gpVArv~ 543 (571)
+|+|+.+++ +..|.++.+++.|||+|||+|++.+||||||+++|+|++..+|+|+||||+++++ +||++
T Consensus 491 vKvDl~~g~---------~~~w~~~~~~~~GEP~FVP~p~~~eEDdG~Iv~~v~~~~~~~s~l~ildAK~l~~--~ar~~ 559 (582)
T KOG1285|consen 491 VKVDLVTGE---------VKKWREGGGRPGGEPIFVPRPGTLEEDDGYIVSVVHDESKEKSFLLILDAKTLEE--VARVE 559 (582)
T ss_pred EEEEecCCc---------eeeEecCCCccCCCceEecCCCCcccCCcEEEEEEEcCCCCcccEEEEeccccce--eeEEe
Confidence 999999997 3467778788888999999999999999999999999999999999999999987 99999
Q ss_pred cCCCCCCCcCcccccCc
Q 008275 544 LSHRVPYGFHGAFMSIP 560 (571)
Q Consensus 544 LP~~vP~GfHG~w~~~~ 560 (571)
+|.+||+||||+|++..
T Consensus 560 vp~rvP~gfHG~f~~~~ 576 (582)
T KOG1285|consen 560 VPTRVPYGFHGTFVSTT 576 (582)
T ss_pred cCCCCCCccceeEeccc
Confidence 99999999999999974
No 7
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=3.3e-26 Score=249.13 Aligned_cols=293 Identities=23% Similarity=0.309 Sum_probs=230.5
Q ss_pred CCCcccccccccceecceEeecCCCCCCCCeEEeeCCCCCCCCCccccccCCccccccccCCCcEEEEEeecCCCCceeE
Q 008275 46 QRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWNV 125 (571)
Q Consensus 46 ~~~fapv~e~~~~~~~~~V~G~IP~~l~~Gt~~RnGP~~~~~~~~~~~~~~g~~~~H~FDGdGmlh~~~f~~g~~g~~~v 125 (571)
.++|+|+.|.+++ -...++|.+|... +|.++|||||+.+.|. ..+|+|||+||+|+++|+.+. -+.
T Consensus 109 ~~~f~~~~~~pd~-~~~~~s~~~~~~~-~g~~~rd~aN~~f~pv---------~g~~~~~gtet~~~~ki~~~t---l~t 174 (582)
T KOG1285|consen 109 SGEFAPVAEFPDP-CKNIFSGFFPEFR-NGESIRDNANPNFTPV---------GGHHLYAGTETPHAVKIDPGT---LET 174 (582)
T ss_pred eccccccCCCCCc-cCcceeeeeeecc-cccccccCCCcceeec---------CCCeeEecCCCceeEEecCcc---cce
Confidence 7999999977654 4578899999976 8999999999987643 247999999999999999873 247
Q ss_pred EEEeeeecchhHHHHHhcCCCccCCcc---cCC-hhhhH---HHHHHhhhhcCCccccccceeeEEECCEEEEEeeCCCc
Q 008275 126 VYMNRHVESETFKQEKQRNRSSFLPAI---EGD-SLAIL---SAYLLNLLRFGKINKYISNTNIFEHAGKFYSVAENHMP 198 (571)
Q Consensus 126 ~y~~R~V~T~~~~~e~~~g~~~~~~~~---~~~-~~~~~---~~~~~~~~r~~~~~~~~aNt~v~~~~g~LlAl~E~~~p 198 (571)
+|+.||.+| |.+|...|+..+.... .+. .+..+ +++.+...+.+....+.+|+..+++.++++|+.|.+.|
T Consensus 175 ~~~~~~~k~--~v~~~~~gah~~~d~~G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~ 252 (582)
T KOG1285|consen 175 TYKVRFTKT--LVQEHTAGAHPHPDEIGTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLP 252 (582)
T ss_pred eEeeccccc--eeeeeecccCCcccCcccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCc
Confidence 999999999 9999988854432111 110 11000 01111111111122367899999999999999999998
Q ss_pred eeeecC---Ccce-eeecccCCCCCCCCCCcceeeCCCCcEEEEEecCC-CCcEEEEEEcCCCCeeEeeEEEEcCccccc
Q 008275 199 QEIDIF---TLET-LGNWDVNGAWNRPFTSHPKKASGTGELVIMGVDAT-KPFVEIGVISADGDKLVHKVDLKLSRCSLC 273 (571)
Q Consensus 199 ~~iDp~---TLeT-~G~~d~~g~l~~~~tAHPk~Dp~tGel~~f~~~~~-~~~~~~~~~d~~G~~~~~~~~~~~~~~~~i 273 (571)
|..=.. .+|| ||.+++.+++...+.||||+||.||+++++.|+.. ++++.|.+++.+|.++. .+.+....+.|+
T Consensus 253 ~p~yvhs~G~tenyi~~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~-~~~~~~~~~t~h 331 (582)
T KOG1285|consen 253 YPGYVHSFGDTENYIGRFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSV-PVEIFPSFPTFH 331 (582)
T ss_pred cceEEeecCCccceEeEecCCcccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccC-cceeccCcceEE
Confidence 766554 6899 99999999999999999999999999999999986 57999999999998653 234444578999
Q ss_pred cccccCCCeEEEeeCCeeecHhhhhcCCCceeecCCCceEEEEeeCCC-CCCCeEEEEcCCceeeeeeeeeecC--C-eE
Q 008275 274 HEIGITQRYNVFLDYPLSIDLTRLAFGGPLIKYEHEGYAKIGIMPRYG-DADSVKWFDVEPNCTFHIINCFEDG--D-EV 349 (571)
Q Consensus 274 HdfaiTeny~V~~~~p~~~~~~~~~~g~~~~~~d~~~~tr~~vipR~~-~~~~v~~~~~~~~~~fH~~NA~Ee~--~-~i 349 (571)
||||+|||+.|+++.++.++...|..+..+...+..+..|+++.++.. +...++|...+.+++||..|+||+. + ++
T Consensus 332 h~na~eedg~vi~D~~~~~~~~~~~~~~~p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~~~~~~e~~~~~~~~ 411 (582)
T KOG1285|consen 332 HDNAFEEDGCVVPDLCVYFDLSEMIRDTSPLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFHLWNNWEKKPYDWEV 411 (582)
T ss_pred EeeeecccCceEEEEEEEechhhhhcccceeecccccccccccccccCCcccceEEEeccccccccchhhhcccCCCceE
Confidence 999999999999999999999998887668899999999999999974 3568999999999999999999962 2 45
Q ss_pred EEEEee
Q 008275 350 IVWGCR 355 (571)
Q Consensus 350 vvd~~~ 355 (571)
+|...+
T Consensus 412 ~v~~~~ 417 (582)
T KOG1285|consen 412 VVIGSC 417 (582)
T ss_pred Eeeccc
Confidence 554433
No 8
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.72 E-value=2.9 Score=40.86 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=33.3
Q ss_pred eEEECCEEEEE-eeCCCceeeecCCcceeeecccCCC
Q 008275 182 IFEHAGKFYSV-AENHMPQEIDIFTLETLGNWDVNGA 217 (571)
Q Consensus 182 v~~~~g~LlAl-~E~~~p~~iDp~TLeT~G~~d~~g~ 217 (571)
++.+++.+|+| |-.|..+.+|++||+++|++.|.|+
T Consensus 96 it~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge 132 (262)
T COG3823 96 ITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE 132 (262)
T ss_pred eeeccceEEEEEeccceeEEEChHHhhhhcccccCCc
Confidence 67899999999 7899999999999999999999886
No 9
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=59.88 E-value=9 Score=26.62 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=20.4
Q ss_pred cceeeEEECCEEEEEeeCCCceeeecCC
Q 008275 178 SNTNIFEHAGKFYSVAENHMPQEIDIFT 205 (571)
Q Consensus 178 aNt~v~~~~g~LlAl~E~~~p~~iDp~T 205 (571)
.+.++...+|+||+.++.|.-|.||++|
T Consensus 13 ~~~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 13 IWSSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp --S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred cCcCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 4566788899999999999999999875
No 10
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=54.37 E-value=2.9e+02 Score=29.26 Aligned_cols=112 Identities=7% Similarity=0.013 Sum_probs=64.2
Q ss_pred CceeeecCCcceeeecccCCCCCCCCCCcceeeCCCCcEEEEEecCC-----CCcEEEEEEcCCCCeeEeeEEEEcCc--
Q 008275 197 MPQEIDIFTLETLGNWDVNGAWNRPFTSHPKKASGTGELVIMGVDAT-----KPFVEIGVISADGDKLVHKVDLKLSR-- 269 (571)
Q Consensus 197 ~p~~iDp~TLeT~G~~d~~g~l~~~~tAHPk~Dp~tGel~~f~~~~~-----~~~~~~~~~d~~G~~~~~~~~~~~~~-- 269 (571)
.-|.+|.++..-+|..+- .+.+|.-+.|+..++|....-+. +-.=.+.++|...-. ...+|.+|.
T Consensus 18 rv~viD~d~~k~lGmi~~------g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~--~~~EI~iP~k~ 89 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDT------GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS--PTGEIEIPPKP 89 (342)
T ss_dssp EEEEEETTTTEEEEEEEE------ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE--EEEEEEETTS-
T ss_pred eEEEEECCCCcEEEEeec------ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCc--ccceEecCCcc
Confidence 457788888888887753 46788888887677766554221 111123455655533 334566663
Q ss_pred ----cccccccccC-CCeEEEeeCCeeecHhhhhcCCCceeecCCCceEEEEeeCCCCCCCeEEEEcCCcee
Q 008275 270 ----CSLCHEIGIT-QRYNVFLDYPLSIDLTRLAFGGPLIKYEHEGYAKIGIMPRYGDADSVKWFDVEPNCT 336 (571)
Q Consensus 270 ----~~~iHdfaiT-eny~V~~~~p~~~~~~~~~~g~~~~~~d~~~~tr~~vipR~~~~~~v~~~~~~~~~~ 336 (571)
..+-+.+++| ++-.+++ ++=.--+-+.||+-... .-++.+++|.|+.
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V-------------------~N~TPa~SVtVVDl~~~-kvv~ei~~PGC~~ 141 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYV-------------------QNFTPATSVTVVDLAAK-KVVGEIDTPGCWL 141 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEE-------------------EEESSSEEEEEEETTTT-EEEEEEEGTSEEE
T ss_pred hheecccccceEEccCCcEEEE-------------------EccCCCCeEEEEECCCC-ceeeeecCCCEEE
Confidence 1455677776 2222222 22222477899998753 4567889998864
No 11
>PRK00756 acyltransferase NodA; Provisional
Probab=38.07 E-value=24 Score=33.18 Aligned_cols=22 Identities=45% Similarity=0.833 Sum_probs=17.3
Q ss_pred cceEeecCCCCCCCCeEE-eeCCC
Q 008275 61 VTNIDGEIPEDFPEGVYI-RNGPN 83 (571)
Q Consensus 61 ~~~V~G~IP~~l~~Gt~~-RnGP~ 83 (571)
.++|.-++.+ |+.||++ ||||-
T Consensus 173 V~Pi~r~~se-WP~Gt~IdRNGpe 195 (196)
T PRK00756 173 VFPIGRPMSE-WPSGTLIERNGPE 195 (196)
T ss_pred EEeCCCcccc-CCCCceecCCCCC
Confidence 4566777876 9999987 99994
No 12
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=35.25 E-value=1.7e+02 Score=31.33 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=0.0
Q ss_pred cEEEEeeeccccccCCCCCCcceeeeeeccCCCCCccccceeeEEEEcCCCeecccceeecCCCCCCCCCeEEEEEEEeC
Q 008275 440 KYGYTQIVDSIASSASGMPKYGGLAKLSFEEPDNTESEELIKVEYHKFEENIFCTGGAFVPKGRGVEEDDGWIITFLHNE 519 (571)
Q Consensus 440 ry~Y~~~~~~~~~~~~~~~~~~~l~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~EDDG~Ll~~V~d~ 519 (571)
||+|.+..+ +.|.++|+.+.+. +...-.|.+...-.-- .|.-||++.-+..
T Consensus 49 r~~yv~~rd------------g~vsviD~~~~~~--------v~~i~~G~~~~~i~~s---------~DG~~~~v~n~~~ 99 (369)
T PF02239_consen 49 RYLYVANRD------------GTVSVIDLATGKV--------VATIKVGGNPRGIAVS---------PDGKYVYVANYEP 99 (369)
T ss_dssp SEEEEEETT------------SEEEEEETTSSSE--------EEEEE-SSEEEEEEE-----------TTTEEEEEEEET
T ss_pred CEEEEEcCC------------CeEEEEECCcccE--------EEEEecCCCcceEEEc---------CCCCEEEEEecCC
Q ss_pred CCCeeEEEEEeCCCCCCCceEEEEcC
Q 008275 520 DTNISQVYIIDTKKFTDEPVAKITLS 545 (571)
Q Consensus 520 ~~~~S~l~VlDA~~~~~gpVArv~LP 545 (571)
..+.|+|+++++ |+.++...
T Consensus 100 ----~~v~v~D~~tle--~v~~I~~~ 119 (369)
T PF02239_consen 100 ----GTVSVIDAETLE--PVKTIPTG 119 (369)
T ss_dssp ----TEEEEEETTT----EEEEEE--
T ss_pred ----CceeEecccccc--ceeecccc
No 13
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=33.87 E-value=3e+02 Score=28.80 Aligned_cols=95 Identities=17% Similarity=0.114 Sum_probs=56.4
Q ss_pred CCEEEEEeeCC----C--ceeeecC--CcceeeecccCCCCCCCCCCcceeeCCCCcEEEEEecCCCCcEEEEEEcCCCC
Q 008275 186 AGKFYSVAENH----M--PQEIDIF--TLETLGNWDVNGAWNRPFTSHPKKASGTGELVIMGVDATKPFVEIGVISADGD 257 (571)
Q Consensus 186 ~g~LlAl~E~~----~--p~~iDp~--TLeT~G~~d~~g~l~~~~tAHPk~Dp~tGel~~f~~~~~~~~~~~~~~d~~G~ 257 (571)
+..|||..|.+ . -|.++++ +|+-++...-.|. -..|-.+||+...++.-+| ....+.++.++.+|.
T Consensus 48 ~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~----~p~~i~~~~~g~~l~vany--~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 48 GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS----SPCHIAVDPDGRFLYVANY--GGGSVSVFPLDDDGS 121 (345)
T ss_dssp SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS----CEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSE
T ss_pred CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC----CcEEEEEecCCCEEEEEEc--cCCeEEEEEccCCcc
Confidence 57789998863 2 5788886 6777777654332 3468888986444444444 455577888888887
Q ss_pred eeEeeEEEEc---------CccccccccccCC--CeEEEe
Q 008275 258 KLVHKVDLKL---------SRCSLCHEIGITQ--RYNVFL 286 (571)
Q Consensus 258 ~~~~~~~~~~---------~~~~~iHdfaiTe--ny~V~~ 286 (571)
.......+.. ...+..|...+++ +|++.+
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 4322111211 1345667777663 355444
No 14
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=31.06 E-value=6.7e+02 Score=26.67 Aligned_cols=112 Identities=18% Similarity=0.104 Sum_probs=64.7
Q ss_pred CCceeeecCCcceeeecccCCCCCCCCCCcceeeCCCCcEEEEEecC-----CCCcEEEEEEcCCCCeeEeeEEEEcC-c
Q 008275 196 HMPQEIDIFTLETLGNWDVNGAWNRPFTSHPKKASGTGELVIMGVDA-----TKPFVEIGVISADGDKLVHKVDLKLS-R 269 (571)
Q Consensus 196 ~~p~~iDp~TLeT~G~~d~~g~l~~~~tAHPk~Dp~tGel~~f~~~~-----~~~~~~~~~~d~~G~~~~~~~~~~~~-~ 269 (571)
+.-+.||.+|++.+|.++.+. ..|..+.|+.+++|....-+ ++-.=.+.++|..-.+..++ +++| .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~------~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~--i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF------LPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD--IELPEG 98 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC------CCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeE--EccCCC
Confidence 778999999999999987542 44555677655555544311 12222355666443323233 3332 2
Q ss_pred -----cccccccccCCCeEEEeeCCeeecHhhhhcCCCceeecCCCceEEEEeeCCCCCCCeEEEEcCCc
Q 008275 270 -----CSLCHEIGITQRYNVFLDYPLSIDLTRLAFGGPLIKYEHEGYAKIGIMPRYGDADSVKWFDVEPN 334 (571)
Q Consensus 270 -----~~~iHdfaiTeny~V~~~~p~~~~~~~~~~g~~~~~~d~~~~tr~~vipR~~~~~~v~~~~~~~~ 334 (571)
..+-+.|+++.+ |+..+..+.+-...+.||+.... .-++.+++|.|
T Consensus 99 p~~~~~~~~~~~~ls~d------------------gk~l~V~n~~p~~~V~VvD~~~~-kvv~ei~vp~~ 149 (352)
T TIGR02658 99 PRFLVGTYPWMTSLTPD------------------NKTLLFYQFSPSPAVGVVDLEGK-AFVRMMDVPDC 149 (352)
T ss_pred chhhccCccceEEECCC------------------CCEEEEecCCCCCEEEEEECCCC-cEEEEEeCCCC
Confidence 345566776653 22333344444577889998752 45666778653
No 15
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=29.03 E-value=74 Score=32.42 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=31.8
Q ss_pred eeEEECCEEEEE-eeCCCceeeecCCcceeeecccCCC
Q 008275 181 NIFEHAGKFYSV-AENHMPQEIDIFTLETLGNWDVNGA 217 (571)
Q Consensus 181 ~v~~~~g~LlAl-~E~~~p~~iDp~TLeT~G~~d~~g~ 217 (571)
.+..++++|+-| |-.+.-+..|+.||+.++.+.+.|+
T Consensus 94 Git~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~E 131 (264)
T PF05096_consen 94 GITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGE 131 (264)
T ss_dssp EEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS
T ss_pred eEEEECCEEEEEEecCCeEEEEccccceEEEEEecCCc
Confidence 367789999998 7899999999999999999988654
No 16
>KOG4105 consensus 6-pyruvoyl tetrahydrobiopterin synthase [Coenzyme transport and metabolism]
Probab=23.43 E-value=21 Score=31.13 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=30.3
Q ss_pred CceeeecCCcceeeecc-cCCC---CCCCCCCcceeeCCCCcEEEE
Q 008275 197 MPQEIDIFTLETLGNWD-VNGA---WNRPFTSHPKKASGTGELVIM 238 (571)
Q Consensus 197 ~p~~iDp~TLeT~G~~d-~~g~---l~~~~tAHPk~Dp~tGel~~f 238 (571)
.+..-|.++||+.|+++ ++|. ...-.|-|.-+||.||-.++.
T Consensus 23 S~~LSDaENle~FGKCNN~nGHGHNY~v~vtvrGeiDp~tGMV~nl 68 (141)
T KOG4105|consen 23 SEKLSDAENLETFGKCNNSNGHGHNYVVKVTVRGEIDPTTGMVYNL 68 (141)
T ss_pred ccccCchhhhHHhhccCCCCCCCcceEEEEEEecccCCccceeEEH
Confidence 34556889999999994 6553 112357889999999977665
No 17
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=20.06 E-value=1.5e+02 Score=31.84 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=39.6
Q ss_pred ccceeeEEECCEEEEEeeCCCceeeecCCcce-eeecccCCCCCCCCCCcceeeCCCCcEEEEEecCCCCcEEEEEE
Q 008275 177 ISNTNIFEHAGKFYSVAENHMPQEIDIFTLET-LGNWDVNGAWNRPFTSHPKKASGTGELVIMGVDATKPFVEIGVI 252 (571)
Q Consensus 177 ~aNt~v~~~~g~LlAl~E~~~p~~iDp~TLeT-~G~~d~~g~l~~~~tAHPk~Dp~tGel~~f~~~~~~~~~~~~~~ 252 (571)
.+-|..-.+..|.+||| ||+.|++ ++..+++..=- ---|-+|++|+-+|-+|= +..-+.||++
T Consensus 230 i~tTGfsr~seRq~aLw--------dp~nl~eP~~~~elDtSnG---vl~PFyD~dt~ivYl~GK--GD~~IRYyEi 293 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALW--------DPNNLEEPIALQELDTSNG---VLLPFYDPDTSIVYLCGK--GDSSIRYFEI 293 (472)
T ss_pred eeeeccccccccceecc--------CcccccCcceeEEeccCCc---eEEeeecCCCCEEEEEec--CCcceEEEEe
Confidence 66777888889999999 6777743 44444443200 113779999887776653 2234556655
Done!