Query 008275
Match_columns 571
No_of_seqs 167 out of 1071
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 22:20:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3npe_A 9-CIS-epoxycarotenoid d 100.0 1E-117 3E-122 976.1 49.4 481 17-559 10-521 (529)
2 2biw_A Apocarotenoid-cleaving 100.0 4E-115 2E-119 950.1 49.5 457 45-559 20-490 (490)
3 3kvc_A Retinoid isomerohydrola 100.0 3E-111 9E-116 929.1 42.1 465 45-559 12-533 (533)
4 3c75_H MADH, methylamine dehyd 52.2 2.1E+02 0.0072 29.6 14.3 121 185-334 83-221 (426)
5 3nol_A Glutamine cyclotransfer 27.3 51 0.0017 32.1 4.2 36 181-216 91-127 (262)
6 3nol_A Glutamine cyclotransfer 27.2 81 0.0028 30.6 5.7 36 182-217 177-213 (262)
7 3mbr_X Glutamine cyclotransfer 25.9 58 0.002 31.3 4.3 36 181-216 69-105 (243)
8 3sjl_D Methylamine dehydrogena 24.4 5.7E+02 0.019 25.9 15.0 90 183-280 41-146 (386)
9 3nok_A Glutaminyl cyclase; bet 24.1 51 0.0017 32.3 3.6 69 182-262 101-170 (268)
10 2mad_H Methylamine dehydrogena 19.4 6.6E+02 0.023 24.8 26.1 49 185-239 31-84 (373)
No 1
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}
Probab=100.00 E-value=1e-117 Score=976.08 Aligned_cols=481 Identities=27% Similarity=0.485 Sum_probs=409.3
Q ss_pred ccchhhHHHHHHHHHhhhhhcc---CCCCC-------CCCCCcccccccccceecceEeecCCCCCCCCeEEeeCCCCCC
Q 008275 17 KTIKNSFVKLLDVFVDQMFEFV---DQPLL-------PSQRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLF 86 (571)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~---~~p~~-------~~~~~fapv~e~~~~~~~~~V~G~IP~~l~~Gt~~RnGP~~~~ 86 (571)
+.++.+++.+||++++.+.++. .+|+. .++|+|+|++||.++ ..++|+|+||++| +|+||||||||.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~fapv~ee~~~-~~l~V~G~IP~~L-~Gt~~RNGpnP~f 87 (529)
T 3npe_A 10 NLFQRAAAAALDAFEEGFVANVLERPHGLPSTADPAVQIAGNFAPVGERPPV-HELPVSGRIPPFI-DGVYARNGANPCF 87 (529)
T ss_dssp CSHHHHHHHHHHHHHHHTCCCCCCTTSCCCTTTCHHHHTSGGGSCCCCEEEE-ESCCEEECCCTTC-EEEEEECCBCCSS
T ss_pred ChhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccchhccCcccccccCCc-ccceEeecCCccC-CceEEEecCCcCc
Confidence 4578899999999999998862 23433 348999999999855 4689999999976 9999999999865
Q ss_pred CCCccccccCCccccccccCCCcEEEEEeecCCCCceeE-EEEeeeecchhHHHHHhcCCCccCCcccCChhh-hHHHHH
Q 008275 87 GGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWNV-VYMNRHVESETFKQEKQRNRSSFLPAIEGDSLA-ILSAYL 164 (571)
Q Consensus 87 ~~~~~~~~~~g~~~~H~FDGdGmlh~~~f~~g~~g~~~v-~y~~R~V~T~~~~~e~~~g~~~~~~~~~~~~~~-~~~~~~ 164 (571)
.+. ..+||||||||||+|+|++| +| +|+||||||++|++|+++|+++|+..+..-++. .+....
T Consensus 88 ~~~---------~~~HwFDGdGmlh~~~f~~G-----~a~~y~nRfVrT~~~~~e~~agr~~~~~~~~~~~~~~~~~r~~ 153 (529)
T 3npe_A 88 DPV---------AGHHLFDGDGMVHALRIRNG-----AAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLA 153 (529)
T ss_dssp CCS---------SCCCGGGSCBEEEEEEEETT-----EEEEEEEEECCCHHHHHHHHHTSCCSCCTTTTTTSSTHHHHHH
T ss_pred CCc---------CCCccCCCCceEEEEEECCC-----ccceEEEeEecCHHHHHHHHcCCcccccccccccccchhhhhh
Confidence 432 45899999999999999987 89 999999999999999999999997543322211 222222
Q ss_pred Hhhhh--cCC----ccccccceeeEEECCEEEEEeeCCCceee--ecC-CcceeeecccCCCCCCCCCCcceeeCCCCcE
Q 008275 165 LNLLR--FGK----INKYISNTNIFEHAGKFYSVAENHMPQEI--DIF-TLETLGNWDVNGAWNRPFTSHPKKASGTGEL 235 (571)
Q Consensus 165 ~~~~r--~~~----~~~~~aNt~v~~~~g~LlAl~E~~~p~~i--Dp~-TLeT~G~~d~~g~l~~~~tAHPk~Dp~tGel 235 (571)
....+ ++. ..+|+|||||++|+||||||||+|.||++ ||+ ||||+|.+||+|+|..+||||||+||+||||
T Consensus 154 ~~~~~~~~~~~~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~l~~~~tAHPk~Dp~TGel 233 (529)
T 3npe_A 154 LFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGEL 233 (529)
T ss_dssp HHHHHHHTTSCCGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGCCCSCCCSCCEECTTTCCE
T ss_pred hhhhhcccccccccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeeeeccCCccCCcccccCcCCCCCCcE
Confidence 11111 221 12589999999999999999999999988 885 9999999999999998999999999999999
Q ss_pred EEEEecCC-CCcEEEEEEcCCCCeeEeeEEEEcCccccccccccCCCeEEEeeCCeeecHhhhhcCCCceeecCCCceEE
Q 008275 236 VIMGVDAT-KPFVEIGVISADGDKLVHKVDLKLSRCSLCHEIGITQRYNVFLDYPLSIDLTRLAFGGPLIKYEHEGYAKI 314 (571)
Q Consensus 236 ~~f~~~~~-~~~~~~~~~d~~G~~~~~~~~~~~~~~~~iHdfaiTeny~V~~~~p~~~~~~~~~~g~~~~~~d~~~~tr~ 314 (571)
++|+|+.. +|+++|++++++|++. +.++|+++.++|||||+|||||+||+++|+++|+.+|+.|+.++.|+|++++||
T Consensus 234 ~~f~y~~~~~p~~~~~~~~~~G~~~-~~~~i~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~~g~~~~~~~p~~~tr~ 312 (529)
T 3npe_A 234 HALSYDVIKRPYLKYFYFRPDGTKS-DDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGSPVVLDAAKTSRF 312 (529)
T ss_dssp EEEECCSSSSCCCEEEEECTTCCBC-CCEECCCSSCBCCCCCEECSSEEEEEECSEEECGGGGTTTCCSEEECTTSCCEE
T ss_pred EEEEeecCCCCcEEEEEECCCCCEE-EEEEEeCCCCceEeeEEecCCeEEEEeCCeEEcHHHHhCCCCceEECCCCCcEE
Confidence 99999985 5899999999999865 567888999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCC-CCeEEEEcCCceeeeeeeeeecC--CeEEEEEeeecCCCCCCCCCCCcchhhhhhhcchhccccccCCCC
Q 008275 315 GIMPRYGDA-DSVKWFDVEPNCTFHIINCFEDG--DEVIVWGCRALESIIPGPDLGLNKFEWFSKKFRHAELADESVDTS 391 (571)
Q Consensus 315 ~vipR~~~~-~~v~~~~~~~~~~fH~~NA~Ee~--~~ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 391 (571)
+||||+++. +.++||++|+||+||++|||||+ |+||+|.|++.+.... +. + .
T Consensus 313 ~VipR~~~~~~~vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~~---------------~~------~----~ 367 (529)
T 3npe_A 313 GVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSI---------------FN------E----S 367 (529)
T ss_dssp EEEETTCSSGGGCEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCCS---------------CC------S----S
T ss_pred EEEECCCCCCCceEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchhh---------------hh------c----c
Confidence 999999643 47999999999999999999974 6899988887542110 00 0 0
Q ss_pred CCCCCCcceEEEEEEeCCCCCeeeeeecC--CCccccCCCcCCCCCCCCccEEEEeeeccccccCCCCCCcceeeeeecc
Q 008275 392 PDDVPLFSRVYEWRLNMQNGDVKETNLSG--TKVSMDFPMINGGYTGIKNKYGYTQIVDSIASSASGMPKYGGLAKLSFE 469 (571)
Q Consensus 392 ~~~~~~~~~L~r~~idl~~g~~~~~~L~~--~~~~~EfP~In~~~~Gr~yry~Y~~~~~~~~~~~~~~~~~~~l~K~D~~ 469 (571)
.+ ...++|+||+||+++|+++++.|.+ .+.++|||+||++|.||+|||+|+++.++ .+.+++|+|+|++
T Consensus 368 -~~-~~~~~l~r~rl~l~~g~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~-------~~~~~~l~K~D~~ 438 (529)
T 3npe_A 368 -DE-RLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEP-------WPKVSGFAKVDLS 438 (529)
T ss_dssp -SS-CCCCEEEEEEECTTTCCEEEEESSCSSSCCCEEEEEECGGGTTSCCSEEEEEECCS-------TTSCCEEEEEETT
T ss_pred -ch-hhccceEEEEEcCCCCCEEeEEecccccCccccCceEChhHcCCccceEEEeccCC-------CCCcceEEEEecC
Confidence 01 3457899999999999998887762 13689999999999999999999987542 3467999999999
Q ss_pred CCCCCccccceeeEEEEcCCCeecccceeecCCC----CCCCCCeEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcC
Q 008275 470 EPDNTESEELIKVEYHKFEENIFCTGGAFVPKGR----GVEEDDGWIITFLHNEDTNISQVYIIDTKKFTDEPVAKITLS 545 (571)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~----~~~EDDG~Ll~~V~d~~~~~S~l~VlDA~~~~~gpVArv~LP 545 (571)
+++ ++.||+++++|+|||||||||+ +++|||||||++|+|..+++|+|+||||++|++ |||++||
T Consensus 439 tg~---------~~~~~~g~~~~~~EPvFVPrp~~~~~~~~EDDG~lLs~V~d~~~~~S~LlILDA~~l~~--vArv~LP 507 (529)
T 3npe_A 439 TGE---------LTKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRL--EATVQLP 507 (529)
T ss_dssp TCC---------EEEEECCTTBCCCCCEEEECCSCSSSSCCTTCEEEEEEEEBSSCCCEEEEEEETTTTEE--EEEEEES
T ss_pred CCc---------eEEEEcCCCccccCCEeeeCCCCCCCCCCCCCcEEEEEEEECCCCcEEEEEEeCCCCcc--ceEEECC
Confidence 986 3579999999999999999999 889999999999999999999999999999986 9999999
Q ss_pred CCCCCCcCcccccC
Q 008275 546 HRVPYGFHGAFMSI 559 (571)
Q Consensus 546 ~~vP~GfHG~w~~~ 559 (571)
++||+||||+|+++
T Consensus 508 ~rvP~GfHG~wv~~ 521 (529)
T 3npe_A 508 SRVPFGFHGTFITG 521 (529)
T ss_dssp SCCCCCSCEEEEEH
T ss_pred CCCCCCccccccCH
Confidence 99999999999996
No 2
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Probab=100.00 E-value=4.5e-115 Score=950.13 Aligned_cols=457 Identities=21% Similarity=0.375 Sum_probs=391.3
Q ss_pred CCCCcccccccccceecceEeecCCCCCCCCeEEeeCCCCCCCCCccccccCCccccccccCCCcEEEEEe-ecCCCCce
Q 008275 45 SQRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGEGMLHALYF-KKETDGSW 123 (571)
Q Consensus 45 ~~~~fapv~e~~~~~~~~~V~G~IP~~l~~Gt~~RnGP~~~~~~~~~~~~~~g~~~~H~FDGdGmlh~~~f-~~g~~g~~ 123 (571)
|+++|+|+.+|.++ .+..|+|+||++| +|+|||||||+++. .+.+++||||||||||+|+| ++|
T Consensus 20 ~~~~f~~~~~E~~~-~l~~V~G~IP~~L-~Gt~~RnGP~~~~~--------~~~~~~H~FDGdGmlh~~~f~~~G----- 84 (490)
T 2biw_A 20 WLRGYQSQPQEWDY-WVEDVEGSIPPDL-QGTLYRNGPGLLEI--------GDRPLKHPFDGDGMVTAFKFPGDG----- 84 (490)
T ss_dssp HHHTTSCCCSCEEE-ECCCEEECCCTTC-CEEEEECCBCCSEE--------TTEECSSGGGSCBEEEEEEECSSS-----
T ss_pred hhhhccCccccCCc-ccceEEeCCCCCC-CeEEEEeCCCcCcC--------CCCcccCccCCCCeEEEEEECCCC-----
Confidence 67999999877754 4445999999976 99999999998753 33467899999999999999 877
Q ss_pred eEEEEeeeecchhHHHHHhcCCCccCCcccCChhhhHHHHHHhhhhcCCccccccceeeEEECCEEEEEeeCCCceeeec
Q 008275 124 NVVYMNRHVESETFKQEKQRNRSSFLPAIEGDSLAILSAYLLNLLRFGKINKYISNTNIFEHAGKFYSVAENHMPQEIDI 203 (571)
Q Consensus 124 ~v~y~~R~V~T~~~~~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~aNt~v~~~~g~LlAl~E~~~p~~iDp 203 (571)
+|+|+||||||++|++|+++|+++|++.+....... .+.+.+. ...+|+|||||++|+||||||||++.||+|||
T Consensus 85 ~v~y~~R~v~T~~~~~e~~ag~~~~~~~fg~~~~~~---~~~~~~~--~~~~~~aNT~v~~~~g~llAl~E~~~p~~ldp 159 (490)
T 2biw_A 85 RVHFQSKFVRTQGYVEEQKAGKMIYRGVFGSQPAGG---WLKTIFD--LRLKNIANTNITYWGDRLLALWEGGQPHRLEP 159 (490)
T ss_dssp CCEEEEEECCCHHHHHHHHHTSCCSBCTTSCCCSST---HHHHTTC--CCBCCCCCSEEEEETTEEEEECTTSCCEEECT
T ss_pred EEEEEcceEeCHHHHHHHHhCCcccccccccCCCCc---hhhhhcc--cccCCCCEEEEEEECCEEEEEEcCCCCEeccc
Confidence 799999999999999999999999876322211111 1223222 23589999999999999999999999999999
Q ss_pred CCcceeeecccCCCC-C-CCCCCcceeeCC------CCcEEEEEecCCCC-cEEEEEEcCCCCeeEeeEEEEcCcccccc
Q 008275 204 FTLETLGNWDVNGAW-N-RPFTSHPKKASG------TGELVIMGVDATKP-FVEIGVISADGDKLVHKVDLKLSRCSLCH 274 (571)
Q Consensus 204 ~TLeT~G~~d~~g~l-~-~~~tAHPk~Dp~------tGel~~f~~~~~~~-~~~~~~~d~~G~~~~~~~~~~~~~~~~iH 274 (571)
.||||+|.+||+|+| . .+||||||+||+ ||||++|+++.+++ .++|+++|++|++. +.+.+++|.++|||
T Consensus 160 ~tLeT~G~~d~~g~l~~~~~~tAHPk~Dp~~~~~~gtgel~~fg~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~H 238 (490)
T 2biw_A 160 SNLATIGLDDLGGILAEGQPLSAHPRIDPASTFDGGQPCYVTFSIKSSLSSTLTLLELDPQGKLL-RQKTETFPGFAFIH 238 (490)
T ss_dssp TTCCEEEECCTTTTSCTTCCCCSCCEEESSCTTTTTCCEEEEEEEEESSEEEEEEEEECTTSCEE-EEEEEEEESCCCCC
T ss_pred ccccEeeeeccCCcccCCcccccCceECccccccCCCCeEEEEEecCCCCcEEEEEEECCCCCEE-eeEEEeCCCCceEe
Confidence 999999999999999 5 479999999999 99999999998765 48999999999864 56778999999999
Q ss_pred ccccCCCeEEEeeCCeeecHhhhhcCC----CceeecCCCceEEEEeeCCCCCCCeEEEEcCCceeeeeeeeeecCCeEE
Q 008275 275 EIGITQRYNVFLDYPLSIDLTRLAFGG----PLIKYEHEGYAKIGIMPRYGDADSVKWFDVEPNCTFHIINCFEDGDEVI 350 (571)
Q Consensus 275 dfaiTeny~V~~~~p~~~~~~~~~~g~----~~~~~d~~~~tr~~vipR~~~~~~v~~~~~~~~~~fH~~NA~Ee~~~iv 350 (571)
||+|||||+||+++|+++|+.+|+.|. .++.|+|++++||+||||+ .+.++||++|+||+||++|||||+|+||
T Consensus 239 DfaiTeny~V~~~~P~~~~~~~~~~g~~~~~~~~~~~p~~~tr~~VipR~--~~~v~~f~~~~~f~fH~~NA~Ee~~~Iv 316 (490)
T 2biw_A 239 DFAITPHYAIFLQNNVTLNGLPYLFGLRGAGECVQFHPDKPAQIILVPRD--GGEIKRIPVQAGFVFHHANAFEENGKII 316 (490)
T ss_dssp CCEECSSEEEEEECCEEECCHHHHTTSSCGGGGEEECTTSCEEEEEEETT--SCCCEEEEECCCEEEEEEEEEEETTEEE
T ss_pred eeeccCCEEEEEeCCeEEcHHHHhhccCCccceeEeCCCCCcEEEEEECC--CCccEEEecCCCeEEecccceecCCeEE
Confidence 999999999999999999999998753 5799999999999999999 3579999999999999999999999999
Q ss_pred EEEeeecCCCCCCCCCCCcchhhhhhhcchhccccccCCCCCCCCCCcceEEEEEEeCCCCCeeeeeecCCCccccCCCc
Q 008275 351 VWGCRALESIIPGPDLGLNKFEWFSKKFRHAELADESVDTSPDDVPLFSRVYEWRLNMQNGDVKETNLSGTKVSMDFPMI 430 (571)
Q Consensus 351 vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~r~~idl~~g~~~~~~L~~~~~~~EfP~I 430 (571)
+|+|+|++..+..... ++.. ... ...+.++|+||+||+++|+++++.|. +.++|||+|
T Consensus 317 ~d~~~~~~~~~~~~~~---------------~~~~----~~~-~~~~~~~l~R~~i~l~~g~v~~~~l~--~~~~EfP~I 374 (490)
T 2biw_A 317 LDSICYNSLPQVDTDG---------------DFRS----TNF-DNLDPGQLWRFTIDPAAATVEKQLMV--SRCCEFPVV 374 (490)
T ss_dssp EEEEEESCCCCCCTTC---------------CGGG----CCG-GGSCCCEEEEEEEETTTTEEEEEEEE--CSCEEEEEC
T ss_pred EEEeccCCcccccccc---------------cccc----ccc-ccCCCceEEEEEEECCCCceEEEecc--CCccccccc
Confidence 9999998754321110 0000 000 11345899999999999999998887 578999999
Q ss_pred CCCCCCCCccEEEEeeeccccccCCCCCCcceeeeeeccCCCCCccccceeeEEEEcCCCeecccceeecCCCCCCCCCe
Q 008275 431 NGGYTGIKNKYGYTQIVDSIASSASGMPKYGGLAKLSFEEPDNTESEELIKVEYHKFEENIFCTGGAFVPKGRGVEEDDG 510 (571)
Q Consensus 431 n~~~~Gr~yry~Y~~~~~~~~~~~~~~~~~~~l~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~EDDG 510 (571)
|+++.||+|||+|+++.+.. .+.+.+++|+|+|+++++ .+.|++|+++|+|||+|||||++++||||
T Consensus 375 n~~~~G~~~Ry~Y~~~~~~~----~~~~~~~~l~K~D~~tg~---------~~~~~~g~g~~~~EPvFVPrp~~~~EDDG 441 (490)
T 2biw_A 375 HPQQVGRPYRYVYMGAAHHS----TGNAPLQAILKVDLESGT---------ETLRSFAPHGFAGEPIFVPRPGGVAEDDG 441 (490)
T ss_dssp CGGGTTSCCSEEEEEECSSS----SSCCCCCEEEEEETTTTE---------EEEEECTTTEECCCCEEEECTTCCSTTCE
T ss_pred ChhhCCceeeeEEEEeecCC----CCCCCCCeEEEEECCCCC---------EEEEECCCCccccCCEEecCCCCCCCCCc
Confidence 99999999999999876421 234568999999999985 45788899999999999999999999999
Q ss_pred EEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCCCCCCCcCcccccC
Q 008275 511 WIITFLHNEDTNISQVYIIDTKKFTDEPVAKITLSHRVPYGFHGAFMSI 559 (571)
Q Consensus 511 ~Ll~~V~d~~~~~S~l~VlDA~~~~~gpVArv~LP~~vP~GfHG~w~~~ 559 (571)
|||++|+|+++++|+|+||||++|++|||||++||++||+||||+|+++
T Consensus 442 ~ll~~V~d~~~~~S~l~IlDA~~~~~~pvArv~lP~rvP~GfHG~wv~~ 490 (490)
T 2biw_A 442 WLLCLIYKADLHRSELVILDAQDITAPAIATLKLKHHIPYPLHGSWAQT 490 (490)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCTTSCCSEEEECSSCCCCCCCEEEEEC
T ss_pred EEEEEEEeCCCCceeEEEEccCCCCcCceEEEeCCCcCCCCccccccCC
Confidence 9999999999999999999999999999999999999999999999873
No 3
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A
Probab=100.00 E-value=2.7e-111 Score=929.07 Aligned_cols=465 Identities=20% Similarity=0.269 Sum_probs=362.5
Q ss_pred CCCCcccccccccceecceEeecCCCCCCCCeEEeeCCCCCCCCCccccccCCccccccccCCCcEEEEEeecCCCCcee
Q 008275 45 SQRNFAPVDALREAVLVTNIDGEIPEDFPEGVYIRNGPNPLFGGLKSTKSMFGSSNHIWVEGEGMLHALYFKKETDGSWN 124 (571)
Q Consensus 45 ~~~~fapv~e~~~~~~~~~V~G~IP~~l~~Gt~~RnGP~~~~~~~~~~~~~~g~~~~H~FDGdGmlh~~~f~~g~~g~~~ 124 (571)
.+.+|+|++|+.+++. +.|+|+||++| +|+|||||||+++. .+.+++||||||||||+|+|++| +
T Consensus 12 ~~~~f~~~~E~~~p~~-l~V~G~IP~~L-~Gtl~RNGPg~~~~--------g~~~~~HwFDGdGmlh~~~~~~G-----~ 76 (533)
T 3kvc_A 12 YKKLFETVEELSSPLT-AHVTGRIPLWL-TGSLLRCGPGLFEV--------GSEPFYHLFDGQALLHKFDFKEG-----H 76 (533)
T ss_dssp GGGGGSCCCCCSSCEE-CEEEECCCTTC-CEEEEEEEECCCEE--------TTEECCBTTTSCEEEEEEEEETT-----E
T ss_pred hhhhcCcccccCCcee-eeEEeeCCCCC-ceEEEEeCCCcccc--------CCcccccccCCCCEEEEEEEeCC-----E
Confidence 3688999999987765 88999999976 99999999998742 23467999999999999999987 8
Q ss_pred EEEEeeeecchhHHHHHhcCCCccCC---cccCChhhhHHHHHHhhhhcCCccccccceeeEEECCEEEEEeeCCCceee
Q 008275 125 VVYMNRHVESETFKQEKQRNRSSFLP---AIEGDSLAILSAYLLNLLRFGKINKYISNTNIFEHAGKFYSVAENHMPQEI 201 (571)
Q Consensus 125 v~y~~R~V~T~~~~~e~~~g~~~~~~---~~~~~~~~~~~~~~~~~~r~~~~~~~~aNt~v~~~~g~LlAl~E~~~p~~i 201 (571)
|+|+||||||++|++|+++|+++|+. ...++||.++++++++.++.. ..+|+|||||++|+|+||||||++.||+|
T Consensus 77 v~y~~R~v~T~~~~~e~~agr~~~~~fg~~~~~~p~~~~~~~~~~~~~~~-~~~~~ANt~v~~~~g~LlAl~E~~~p~~i 155 (533)
T 3kvc_A 77 VTYHRRFIRTDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFRGV-EVTDNALVNIYPVGEDYYACTETNFITKV 155 (533)
T ss_dssp EEEEEEECCCHHHHHHHHHTSCCSCBTTBCC--------------------CCCCCCCSEEEEETTEEEEECSSSEEEEE
T ss_pred EEEEEEEecCHHHHHHHHcCCcceeccCcccCCcchhhHHHHHHHhhccC-CCCCCCEEEEEEECCEEEEEEcCCcCEEe
Confidence 99999999999999999999999754 234588888887776655432 34799999999999999999999999999
Q ss_pred ecCCcceeeecccCCCCC-CCCCCcceeeCCCCcEEEEEecCCC---CcEEEEEEcCCC-----CeeEee--EEEE---c
Q 008275 202 DIFTLETLGNWDVNGAWN-RPFTSHPKKASGTGELVIMGVDATK---PFVEIGVISADG-----DKLVHK--VDLK---L 267 (571)
Q Consensus 202 Dp~TLeT~G~~d~~g~l~-~~~tAHPk~Dp~tGel~~f~~~~~~---~~~~~~~~d~~G-----~~~~~~--~~~~---~ 267 (571)
||+||||+|.+||+|.|. ..||||||+|| |||++|||++.++ +.+.++.+++++ ...... ..++ +
T Consensus 156 Dp~tLeT~G~~d~~g~l~~~~~tAHPk~Dp-tGel~~fg~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 234 (533)
T 3kvc_A 156 NPETLETIKQVDLCNYVSVNGATAHPHIEN-DGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDR 234 (533)
T ss_dssp CTTTCCEEEEEEHHHHSSCSCCCSCCEECT-TSCEEEEEEECC---CCEEEEEEECCCCTTCCCGGGGCEEEEEEECSST
T ss_pred ChHHcccccccccCCccCCCccCCCCccCC-CCCEEEEeeccCCCCCcEEEEEEECccccccccccccceeEEeeccccC
Confidence 999999999999999996 57999999999 9999999999875 456666666542 111111 2233 4
Q ss_pred CccccccccccCCCeEEEeeCCeeecHhhhhcC-----CC---ceeecCCCceEEEEeeCCCCCCCeEEEEcCCceeeee
Q 008275 268 SRCSLCHEIGITQRYNVFLDYPLSIDLTRLAFG-----GP---LIKYEHEGYAKIGIMPRYGDADSVKWFDVEPNCTFHI 339 (571)
Q Consensus 268 ~~~~~iHdfaiTeny~V~~~~p~~~~~~~~~~g-----~~---~~~~d~~~~tr~~vipR~~~~~~v~~~~~~~~~~fH~ 339 (571)
+.|+|||||||||||+||+++|+++|+.+|+.| .+ ++.|+|++++||+||||+++...++||++++||+||+
T Consensus 235 ~~p~~iHDFaiTeny~Vf~~~P~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~tr~~VipR~~~~~~~~~~~~~~~f~fH~ 314 (533)
T 3kvc_A 235 FKPSYVHSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYINNKYRTSPFNLFHH 314 (533)
T ss_dssp TCCBCCCCCEECSSEEEEEECSEEEC-----------CCCSGGGEEECSSCCEEEEEEETTTTEEEEEEEEECCEEEEEE
T ss_pred CCCceeeeeeecCCEEEEEeCCeEEcHHHHhhcccccCCChHHheeecCCCCcEEEEEECCCCCcccEEEEeCCeeEEee
Confidence 589999999999999999999999999999876 33 6899999999999999997544468999999999999
Q ss_pred eeeeecCCeEEEEEeeecC-CCCCCCCCCCcchhhhhhhcchhccccccCC-CCCCCCCCcceEEEEEEeCCCC------
Q 008275 340 INCFEDGDEVIVWGCRALE-SIIPGPDLGLNKFEWFSKKFRHAELADESVD-TSPDDVPLFSRVYEWRLNMQNG------ 411 (571)
Q Consensus 340 ~NA~Ee~~~ivvd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~L~r~~idl~~g------ 411 (571)
+|||||+|+||+|+|+|++ ..+. . .+++.+|+..... .........++|+||+||+.++
T Consensus 315 ~NA~Ee~~~Iv~d~~~~~~~~~~~---------~----~~~~~~l~~~~~~~~~~~~~~~~~~l~R~~l~l~~~~~~~~~ 381 (533)
T 3kvc_A 315 INTYEDHEFLIVDLCCWKGFEFVY---------N----YLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKADTGK 381 (533)
T ss_dssp EEEEEETTEEEEEEEEEESSSCGG---------G----GCBHHHHTSCHHHHHHHHTTSCEEEEEEEEEESCCCGGGTTS
T ss_pred eeeEEeCCEEEEEEeeeCCchhhh---------h----hhhhhhhcccchhccccccccCCceEEEEEEeCCcccccccc
Confidence 9999999999999999987 3221 0 0112222210000 0000013557999999999875
Q ss_pred ------------------C--eeeeeecCCCc-cccCCCcCC-CCCCCCccEEEEeeeccccccCCCCCCcceeeeeecc
Q 008275 412 ------------------D--VKETNLSGTKV-SMDFPMING-GYTGIKNKYGYTQIVDSIASSASGMPKYGGLAKLSFE 469 (571)
Q Consensus 412 ------------------~--~~~~~L~~~~~-~~EfP~In~-~~~Gr~yry~Y~~~~~~~~~~~~~~~~~~~l~K~D~~ 469 (571)
+ ++++.|++.+. ++|||+||+ ++.||+|||+|+++.+ .+.+++|+|+|++
T Consensus 382 nl~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~EfP~In~~~~~Gr~~Ry~Y~~~~~--------~~~~~~l~K~D~~ 453 (533)
T 3kvc_A 382 NLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQINYQKYGGKPYTYAYGLGLN--------HFVPDRLCKLNVK 453 (533)
T ss_dssp BCCCCTTCCCEEEECTTSEEEEECEEEECBTTEEEEEEECCHHHHTTSCCCEEEEEEEE--------TTEEEEEEEEETT
T ss_pred cccccccccceeeeccCCceeeeeeeeccCCcccccCceECHHHhCCCcccEEEEeccC--------CCCCceeEEEEcC
Confidence 1 34566763236 899999999 7999999999998754 2467999999999
Q ss_pred CCCCCccccceeeEEEEcCCCeecccceeecCCCCCCCCCeEEEEEEEeCCC--CeeEEEEEeCCCCCCCceEEEEcCCC
Q 008275 470 EPDNTESEELIKVEYHKFEENIFCTGGAFVPKGRGVEEDDGWIITFLHNEDT--NISQVYIIDTKKFTDEPVAKITLSHR 547 (571)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~EDDG~Ll~~V~d~~~--~~S~l~VlDA~~~~~gpVArv~LP~~ 547 (571)
+++. ..|+++++|+|||||||||++++|||||||++|+|+.+ ++|+|+||||++|++ |||++||++
T Consensus 454 tg~~----------~~w~~~~~~~~EPiFVPrp~~~~EDDG~lLs~V~d~~~~~~~s~LlILDA~~l~~--vArv~lP~r 521 (533)
T 3kvc_A 454 TKET----------WVWQEPDSYPSEPIFVSHPDALEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSE--VARAEVEIN 521 (533)
T ss_dssp TCCE----------EEECCTTCBCCCCEEEECTTCCSTTCEEEEEEEECCSTTSCSEEEEEEETTTCCE--EEEEEESSC
T ss_pred CCCE----------EEEeCCCccccCceeecCCCCCCCCCcEEEEEEEeCCcCCCccEEEEEeCCCChh--hEEEEeCCC
Confidence 9863 45789999999999999999999999999999999986 567999999999996 999999999
Q ss_pred CCCCcCcccccC
Q 008275 548 VPYGFHGAFMSI 559 (571)
Q Consensus 548 vP~GfHG~w~~~ 559 (571)
||+||||+|++.
T Consensus 522 vP~GfHG~w~~~ 533 (533)
T 3kvc_A 522 IPVTFHGLFKKS 533 (533)
T ss_dssp CCCCCEEEEEEC
T ss_pred CCCCccccccCC
Confidence 999999999873
No 4
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=52.18 E-value=2.1e+02 Score=29.63 Aligned_cols=121 Identities=17% Similarity=0.078 Sum_probs=73.3
Q ss_pred ECCEEEEEeeC-----CCceeeecCCcceeeecccCCCCCCCCCCcceeeCCCCcEEEEEecCC-----CCcEEEEEEcC
Q 008275 185 HAGKFYSVAEN-----HMPQEIDIFTLETLGNWDVNGAWNRPFTSHPKKASGTGELVIMGVDAT-----KPFVEIGVISA 254 (571)
Q Consensus 185 ~~g~LlAl~E~-----~~p~~iDp~TLeT~G~~d~~g~l~~~~tAHPk~Dp~tGel~~f~~~~~-----~~~~~~~~~d~ 254 (571)
.+.++|...+. +.-+.||+.|++.++....+.. - |-.++|+...+|.-+.... ..--.+.++|.
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~-----P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL-----P-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS-----C-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC-----C-ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 55788888775 4689999999999999887542 3 7888997666665543211 11235678886
Q ss_pred CCCeeEeeEEEEcCc------cccccccccCCC--eEEEeeCCeeecHhhhhcCCCceeecCCCceEEEEeeCCCCCCCe
Q 008275 255 DGDKLVHKVDLKLSR------CSLCHEIGITQR--YNVFLDYPLSIDLTRLAFGGPLIKYEHEGYAKIGIMPRYGDADSV 326 (571)
Q Consensus 255 ~G~~~~~~~~~~~~~------~~~iHdfaiTen--y~V~~~~p~~~~~~~~~~g~~~~~~d~~~~tr~~vipR~~~~~~v 326 (571)
...++.. .+.++. -..-|.++++.+ |+.+.. ......+.||+-... ..+
T Consensus 157 ~t~~vv~--~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n--------------------~~~~~~VsVID~~t~-kvv 213 (426)
T 3c75_H 157 VTFLPIA--DIELPDAPRFLVGTYQWMNALTPDNKNLLFYQ--------------------FSPAPAVGVVDLEGK-TFD 213 (426)
T ss_dssp TTCCEEE--EEEETTCCCCCBSCCGGGSEECTTSSEEEEEE--------------------CSSSCEEEEEETTTT-EEE
T ss_pred CCCcEEE--EEECCCccccccCCCcceEEEcCCCCEEEEEe--------------------cCCCCeEEEEECCCC-eEE
Confidence 5443333 355541 145688888753 333321 111355777776642 345
Q ss_pred EEEEcCCc
Q 008275 327 KWFDVEPN 334 (571)
Q Consensus 327 ~~~~~~~~ 334 (571)
+.++++.+
T Consensus 214 ~~I~v~g~ 221 (426)
T 3c75_H 214 RMLDVPDC 221 (426)
T ss_dssp EEEECCSE
T ss_pred EEEEcCCc
Confidence 66777654
No 5
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=27.27 E-value=51 Score=32.13 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=30.7
Q ss_pred eeEEECCEEEEE-eeCCCceeeecCCcceeeecccCC
Q 008275 181 NIFEHAGKFYSV-AENHMPQEIDIFTLETLGNWDVNG 216 (571)
Q Consensus 181 ~v~~~~g~LlAl-~E~~~p~~iDp~TLeT~G~~d~~g 216 (571)
.+...+++||.+ |..+.-+.+|+.||+.++.+.+.+
T Consensus 91 Git~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~ 127 (262)
T 3nol_A 91 GISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG 127 (262)
T ss_dssp EEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC
Confidence 366779999988 568889999999999999998865
No 6
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=27.19 E-value=81 Score=30.65 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=30.3
Q ss_pred eEEECCEEEEE-eeCCCceeeecCCcceeeecccCCC
Q 008275 182 IFEHAGKFYSV-AENHMPQEIDIFTLETLGNWDVNGA 217 (571)
Q Consensus 182 v~~~~g~LlAl-~E~~~p~~iDp~TLeT~G~~d~~g~ 217 (571)
+-+.+|+|||- |+.+.-+.|||.|.+-++.+++.+.
T Consensus 177 Le~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L 213 (262)
T 3nol_A 177 LEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGI 213 (262)
T ss_dssp EEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTG
T ss_pred eEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcC
Confidence 44558999977 5788899999999999999998764
No 7
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=25.86 E-value=58 Score=31.31 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=30.9
Q ss_pred eeEEECCEEEEE-eeCCCceeeecCCcceeeecccCC
Q 008275 181 NIFEHAGKFYSV-AENHMPQEIDIFTLETLGNWDVNG 216 (571)
Q Consensus 181 ~v~~~~g~LlAl-~E~~~p~~iDp~TLeT~G~~d~~g 216 (571)
.+..++++||.+ |..+.-+.+|+.||+.++.+.+.+
T Consensus 69 Gi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~ 105 (243)
T 3mbr_X 69 GIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG 105 (243)
T ss_dssp EEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSS
T ss_pred EEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC
Confidence 456778999988 678889999999999999988765
No 8
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=24.45 E-value=5.7e+02 Score=25.94 Aligned_cols=90 Identities=13% Similarity=-0.029 Sum_probs=57.4
Q ss_pred EEECCEEEEEee-----CCCceeeecCCcceeeecccCCCCCCCCCCcceeeCCCCcEEEEEecC-----CCCcEEEEEE
Q 008275 183 FEHAGKFYSVAE-----NHMPQEIDIFTLETLGNWDVNGAWNRPFTSHPKKASGTGELVIMGVDA-----TKPFVEIGVI 252 (571)
Q Consensus 183 ~~~~g~LlAl~E-----~~~p~~iDp~TLeT~G~~d~~g~l~~~~tAHPk~Dp~tGel~~f~~~~-----~~~~~~~~~~ 252 (571)
.+.+.++|...+ ++.-+.||+.|++.++.+..+. ..|..+.|+...+|.-+.-. +..--.+.++
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~------~P~va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF------LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS------SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC------CCcEEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 356788998876 4678999999999999887543 23788889766666554211 1112357788
Q ss_pred cCCCCeeEeeEEEEcCc------cccccccccCC
Q 008275 253 SADGDKLVHKVDLKLSR------CSLCHEIGITQ 280 (571)
Q Consensus 253 d~~G~~~~~~~~~~~~~------~~~iHdfaiTe 280 (571)
|.....+.. .+.++. -..-|.+++|.
T Consensus 115 D~~t~~v~~--~I~v~~g~r~~~g~~P~~~a~sp 146 (386)
T 3sjl_D 115 DPVTLLPTA--DIELPDAPRFLVGTYPWMTSLTP 146 (386)
T ss_dssp CTTTCCEEE--EEEETTCCCCCBSCCGGGEEECT
T ss_pred ECCCCeEEE--EEECCCccccccCCCCceEEEcC
Confidence 876544433 345542 23567777763
No 9
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=24.06 E-value=51 Score=32.27 Aligned_cols=69 Identities=13% Similarity=0.081 Sum_probs=44.3
Q ss_pred eEEECCEEEEE-eeCCCceeeecCCcceeeecccCCCCCCCCCCcceeeCCCCcEEEEEecCCCCcEEEEEEcCCCCeeE
Q 008275 182 IFEHAGKFYSV-AENHMPQEIDIFTLETLGNWDVNGAWNRPFTSHPKKASGTGELVIMGVDATKPFVEIGVISADGDKLV 260 (571)
Q Consensus 182 v~~~~g~LlAl-~E~~~p~~iDp~TLeT~G~~d~~g~l~~~~tAHPk~Dp~tGel~~f~~~~~~~~~~~~~~d~~G~~~~ 260 (571)
+...+++||.+ |..+.-+.+|+.||+.++.+.+.+. ...+| .| .+.||.-. +.. .++.+|+...++.
T Consensus 101 it~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt----~D--g~~L~vSd---Gs~--~l~~iDp~T~~v~ 168 (268)
T 3nok_A 101 LASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGLC----YW--NGKLVRSD---GGT--MLTFHEPDGFALV 168 (268)
T ss_dssp EEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCEE----EE--TTEEEEEC---SSS--EEEEECTTTCCEE
T ss_pred EEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEEe----cC--CCEEEEEC---CCC--EEEEEcCCCCeEE
Confidence 56678999988 6788899999999999999988653 11223 12 34444332 222 4567887654443
Q ss_pred ee
Q 008275 261 HK 262 (571)
Q Consensus 261 ~~ 262 (571)
..
T Consensus 169 ~~ 170 (268)
T 3nok_A 169 GA 170 (268)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 10
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=19.42 E-value=6.6e+02 Score=24.79 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=31.1
Q ss_pred ECCEEEEEee-CC----CceeeecCCcceeeecccCCCCCCCCCCcceeeCCCCcEEEEE
Q 008275 185 HAGKFYSVAE-NH----MPQEIDIFTLETLGNWDVNGAWNRPFTSHPKKASGTGELVIMG 239 (571)
Q Consensus 185 ~~g~LlAl~E-~~----~p~~iDp~TLeT~G~~d~~g~l~~~~tAHPk~Dp~tGel~~f~ 239 (571)
.+.++|...+ .. .-+.+|+.|++.++....+ +.+|..+.|+...+|..+
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g------~~p~i~~spDg~~lyv~n 84 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG------FLPNPVAAHSGSEFALAS 84 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC------CCCCeEECCCCCEEEEEe
Confidence 3456776653 22 3489999999888776543 234899999744444443
Done!