Query 008275
Match_columns 571
No_of_seqs 167 out of 1071
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 22:20:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008275.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008275hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zaka2 g.41.2.1 (A:128-158) M 31.2 7.6 0.00056 23.5 0.9 16 227-242 3-18 (31)
2 d1m7ja2 b.92.1.6 (A:420-480) N 26.9 6.3 0.00046 27.7 -0.0 36 523-560 7-42 (61)
3 d1qksa2 b.70.2.1 (A:136-567) C 19.0 38 0.0028 32.3 4.2 35 509-545 378-413 (432)
4 d1k91a_ b.104.1.1 (A:) Calreti 15.3 32 0.0023 21.5 1.5 12 494-505 1-12 (37)
5 d1hzua2 b.70.2.1 (A:118-543) C 13.1 62 0.0045 30.1 3.9 33 511-545 375-407 (426)
6 d2mysa1 b.34.3.1 (A:34-79) Myo 11.1 58 0.0042 21.2 1.9 31 497-532 5-35 (46)
7 d1grwa_ b.1.11.2 (A:) Major sp 8.0 1.1E+02 0.0078 24.0 2.8 15 101-115 104-118 (124)
8 d1vkda_ b.67.2.4 (A:) Hypothet 6.7 1.9E+02 0.014 26.3 4.4 44 507-551 223-271 (327)
9 d1xfda1 b.70.3.1 (A:127-591) D 6.4 1.7E+02 0.012 27.9 4.0 56 226-281 365-420 (465)
10 d1jz8a3 b.18.1.5 (A:13-219) be 5.8 2.3E+02 0.017 23.5 4.3 32 179-210 136-168 (207)
No 1
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=31.22 E-value=7.6 Score=23.47 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=12.5
Q ss_pred eeeCCCCcEEEEEecC
Q 008275 227 KKASGTGELVIMGVDA 242 (571)
Q Consensus 227 k~Dp~tGel~~f~~~~ 242 (571)
++||.||++|-.-++.
T Consensus 3 R~DP~TG~iYH~~f~p 18 (31)
T d1zaka2 3 RLDPVTGKIYHLKYSP 18 (31)
T ss_dssp EECTTTCCEEESSSSC
T ss_pred cCCCCCCcEeEEecCC
Confidence 5799999998766653
No 2
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=26.93 E-value=6.3 Score=27.70 Aligned_cols=36 Identities=14% Similarity=0.285 Sum_probs=30.7
Q ss_pred eeEEEEEeCCCCCCCceEEEEcCCCCCCCcCcccccCc
Q 008275 523 ISQVYIIDTKKFTDEPVAKITLSHRVPYGFHGAFMSIP 560 (571)
Q Consensus 523 ~S~l~VlDA~~~~~gpVArv~LP~~vP~GfHG~w~~~~ 560 (571)
..+|+|||..++.+ -|...-|...+-|++..|++..
T Consensus 7 ~ADlvvfDp~~i~d--~~~~~~~~~~~~Gi~~v~VnG~ 42 (61)
T d1m7ja2 7 YADLVVFDPATVAD--SATFEHPTERAAGIHSVYVNGA 42 (61)
T ss_dssp BCCEEEECTTTCBC--CCCSSSTTCCCBSEEEEEETTE
T ss_pred CCCEEEECHHHccC--cccccccccccceeEEEEECCE
Confidence 35799999999876 6778889999999999999875
No 3
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=19.03 E-value=38 Score=32.27 Aligned_cols=35 Identities=20% Similarity=0.161 Sum_probs=27.9
Q ss_pred Ce-EEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcC
Q 008275 509 DG-WIITFLHNEDTNISQVYIIDTKKFTDEPVAKITLS 545 (571)
Q Consensus 509 DG-~Ll~~V~d~~~~~S~l~VlDA~~~~~gpVArv~LP 545 (571)
|| +|++-++...+..+.++|+|++++++ ++++.-|
T Consensus 378 DG~~v~~S~~~~~~~~g~i~i~D~~T~k~--~~~i~~~ 413 (432)
T d1qksa2 378 DGTEVWFSVWNGKDQESALVVVDDKTLEL--KHVIKDE 413 (432)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTTEE--EEEECCT
T ss_pred CCCEEEEEEecCCCCCCcEEEEECCCceE--EeEecCC
Confidence 45 77777777777788999999999996 7777665
No 4
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.29 E-value=32 Score=21.50 Aligned_cols=12 Identities=8% Similarity=0.119 Sum_probs=10.5
Q ss_pred ccceeecCCCCC
Q 008275 494 TGGAFVPKGRGV 505 (571)
Q Consensus 494 ~EPvFVPrp~~~ 505 (571)
|||-|||.|.++
T Consensus 1 ~eP~~IpDp~A~ 12 (37)
T d1k91a_ 1 GKPEHIPDPDAK 12 (37)
T ss_dssp CCCSEEECSSCC
T ss_pred CCccccCCCCCC
Confidence 699999999875
No 5
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=13.15 E-value=62 Score=30.14 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=26.1
Q ss_pred EEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcC
Q 008275 511 WIITFLHNEDTNISQVYIIDTKKFTDEPVAKITLS 545 (571)
Q Consensus 511 ~Ll~~V~d~~~~~S~l~VlDA~~~~~gpVArv~LP 545 (571)
+|++.++......+.+.|+|+++++. ++++.-+
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T~k~--~~~i~~~ 407 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKTLKL--KAVVKDP 407 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTTTEE--EEEECCT
T ss_pred EEEEEEecCCCCCCeEEEEECCCCeE--EEEECCC
Confidence 67777777777778899999999985 7776554
No 6
>d2mysa1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=11.14 E-value=58 Score=21.24 Aligned_cols=31 Identities=10% Similarity=0.164 Sum_probs=20.4
Q ss_pred eeecCCCCCCCCCeEEEEEEEeCCCCeeEEEEEeCC
Q 008275 497 AFVPKGRGVEEDDGWIITFLHNEDTNISQVYIIDTK 532 (571)
Q Consensus 497 vFVPrp~~~~EDDG~Ll~~V~d~~~~~S~l~VlDA~ 532 (571)
+|||. |.+||+-+.+-....+.--+-.-|.+
T Consensus 5 vwVpD-----~ke~yv~~~Iks~~GdkvTV~t~~G~ 35 (46)
T d2mysa1 5 VFVVH-----PKQSFVKGTIQSKEGGKVTVKTEGGE 35 (46)
T ss_dssp EEEEC-----SSSSEEEEEEEEECSSEEEECCSSSC
T ss_pred EEccc-----CcccEEEEEEEEccCCEEEEEECCCC
Confidence 78887 57899988888776554333333333
No 7
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=7.95 E-value=1.1e+02 Score=23.98 Aligned_cols=15 Identities=27% Similarity=0.764 Sum_probs=13.1
Q ss_pred cccccCCCcEEEEEe
Q 008275 101 HIWVEGEGMLHALYF 115 (571)
Q Consensus 101 ~H~FDGdGmlh~~~f 115 (571)
.-||+++||+++-.|
T Consensus 104 ~~w~~~~~~~~~~~l 118 (124)
T d1grwa_ 104 REWFQGDGMVRRKNL 118 (124)
T ss_dssp GGGGTSSSCCEEEEE
T ss_pred HHHhccCCceEEEEE
Confidence 459999999999877
No 8
>d1vkda_ b.67.2.4 (A:) Hypothetical protein TM1225 {Thermotoga maritima [TaxId: 2336]}
Probab=6.70 E-value=1.9e+02 Score=26.33 Aligned_cols=44 Identities=9% Similarity=0.224 Sum_probs=29.5
Q ss_pred CCCeEEEEE--EEeCCCCeeE---EEEEeCCCCCCCceEEEEcCCCCCCC
Q 008275 507 EDDGWIITF--LHNEDTNISQ---VYIIDTKKFTDEPVAKITLSHRVPYG 551 (571)
Q Consensus 507 EDDG~Ll~~--V~d~~~~~S~---l~VlDA~~~~~gpVArv~LP~~vP~G 551 (571)
-++|||+.+ |.....+..+ .++||..+... .+||..=|.-.|-.
T Consensus 223 t~~Gwl~iYHgv~~~~~~~~Y~~g~~lld~~dP~k-vi~r~~~pil~P~~ 271 (327)
T d1vkda_ 223 TSEGWLLIYHGVTLTCNGYVYSFGAALLDLDDPSK-VLYRSRYYLLTPEE 271 (327)
T ss_dssp ETTEEEEEEEEEEEETTEEEEEEEEEEECSSCTTS-EEEEBSSCSBCCCS
T ss_pred ccCcEEEEEEeccccCCCcEEEEEEEEecCCCCce-eEEcCCCCeEcCCC
Confidence 479999776 3322233333 78899999875 78887777666644
No 9
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.37 E-value=1.7e+02 Score=27.89 Aligned_cols=56 Identities=4% Similarity=-0.025 Sum_probs=28.5
Q ss_pred ceeeCCCCcEEEEEecCCCCcEEEEEEcCCCCeeEeeEEEEcCccccccccccCCC
Q 008275 226 PKKASGTGELVIMGVDATKPFVEIGVISADGDKLVHKVDLKLSRCSLCHEIGITQR 281 (571)
Q Consensus 226 Pk~Dp~tGel~~f~~~~~~~~~~~~~~d~~G~~~~~~~~~~~~~~~~iHdfaiTen 281 (571)
..+|+.++.+|+.+....+....+|.++-+|...+......+..-+..|+..++++
T Consensus 365 ~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~ 420 (465)
T d1xfda1 365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHS 420 (465)
T ss_dssp EEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTT
T ss_pred EEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCC
Confidence 35788766666555432222455777776665321111112233445676666644
No 10
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]}
Probab=5.84 E-value=2.3e+02 Score=23.54 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=25.4
Q ss_pred ceeeEEECCEEEEEeeCCC-ceeeecCCcceee
Q 008275 179 NTNIFEHAGKFYSVAENHM-PQEIDIFTLETLG 210 (571)
Q Consensus 179 Nt~v~~~~g~LlAl~E~~~-p~~iDp~TLeT~G 210 (571)
..+-++.+|+++...|+|. |+++|...+=.-|
T Consensus 136 ~~a~V~vNG~~vG~~~gg~~pf~fDiT~~l~~G 168 (207)
T d1jz8a3 136 SAFHLWCNGRWVGYGQDSRLPSEFDLSAFLRAG 168 (207)
T ss_dssp SEEEEEETTEEEEEEECTTSCEEEECTTTCCSE
T ss_pred eEEEEEECCEEEEEecCCCcCEEEeChhcccCC
Confidence 4456889999999999988 9999997543444
Done!