BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008276
         (571 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  801 bits (2068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/555 (69%), Positives = 459/555 (82%), Gaps = 9/555 (1%)

Query: 1   MKAVVLLCRHFSTTKPVQALVLSTQ-------YTLLSGDACNDILDKYPDIKTLKKLHAQ 53
           MK +  L R FST K  +   L+TQ       +T L+ D CN ILD  PD KTLKKLH++
Sbjct: 1   MKTISSLSRQFSTAKQTKPFSLTTQKPQLSPKFTALTEDLCNKILDVNPDAKTLKKLHSK 60

Query: 54  IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
           I+I+Q+LH NPS+G+KLMR Y ACG+   TRH+FDEIT+KNVVFFNV+IRSYVNN LY D
Sbjct: 61  ILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQD 120

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           AL V+K M+  GF PD YTYPCVLKACS S +L VGLQIH +VVK+GLD NL+ GNGLV+
Sbjct: 121 ALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVS 180

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MYGKC  L  ARRVL++MP +D+V+WNSMVAGYAQNGRF++AL +CREME L++KPDA T
Sbjct: 181 MYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGT 240

Query: 234 MASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
           M SLLP+VTNTS +NVL VK+MF+KL  K+L+SWNVMIAVY NN+MP EAVDLYLQM+VH
Sbjct: 241 MGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVH 300

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
           G+EP+A+S++SVLPACGDLSA +LGR+IH YVERKKL+PNL LENAL+DMYAKCG L EA
Sbjct: 301 GVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEA 360

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
           R VFDQM  +DVVSWTSMISAYGMSGQG DAVALF KM  SG  PD IAFVSVL+ACSHA
Sbjct: 361 RAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHA 420

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           GL++EGRY F +M E Y + P IEH+ C+VDLLGRAGK++EAY L +QMPMEPNER+WGS
Sbjct: 421 GLVDEGRYCFNLMAE-YGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGS 479

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           L++AC +YS+M+I +LAADH+F LAP QSGYYVLLSNIYAKAGRW DV+ VR  MNSKGI
Sbjct: 480 LLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGI 539

Query: 534 KKMPGAS-VEMNDQV 547
           KK+PG S VE+ND V
Sbjct: 540 KKIPGNSNVEINDHV 554


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/556 (69%), Positives = 459/556 (82%), Gaps = 8/556 (1%)

Query: 1   MKAVVLLCRHFSTTKPVQALVLSTQY-------TLLSGDACNDILDKYPDIKTLKKLHAQ 53
           M A+  L RHF   K +Q LVLS Q         +L+ + C  ILDK PDIK LKKLH++
Sbjct: 1   MTAINPLYRHFPAVKQLQTLVLSIQKPKFTQQNVVLTENLCGQILDKNPDIKYLKKLHSK 60

Query: 54  IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
           I I+  LHSNPS+G+KLMR Y  CG+   TRH+FDEI  KNVVFFNV+IRSYVNN+LY D
Sbjct: 61  ICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSD 120

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           AL V+KNM+ HG DPD YTYPCVLKA SGS  L VG+QIH +VV+VGLD N+F GNGL++
Sbjct: 121 ALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLIS 180

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MYGKCGCL EA RVL+ MP +DVV+WNS+VAG A+NG+FD+AL+VC+EME L +KPDA T
Sbjct: 181 MYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGT 240

Query: 234 MASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
           MASLLP+VTNT  +NV  VKEMF+KL NK+LVSWNVMIAVY NNSMPAEAVD++LQME H
Sbjct: 241 MASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDH 300

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
            ++P+AIS+ASVLPACGDLSALLLGR+IH YV RK+LQPNL LENAL+DMYAKCG L  A
Sbjct: 301 AVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYA 360

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
           R VFDQM+ +DVVSWTSMISAYGM+G+G DAV+LFS+M   GL PDSIAFVSVLSACSHA
Sbjct: 361 REVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHA 420

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           GLL+EGRYYFK+MTE+ K+VPRIEHF C+VDLLGRAG+V+EAY  IKQMPMEPNER+WG+
Sbjct: 421 GLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGA 480

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           L++AC +YSNM IG+LAAD +F L P QSGYYVLLSNIYAKAGRW DV  VR  M +KGI
Sbjct: 481 LLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGI 540

Query: 534 KKMPGAS-VEMNDQVQ 548
           KKMPG S  E++++V 
Sbjct: 541 KKMPGVSNFELDNRVH 556


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/547 (70%), Positives = 454/547 (82%), Gaps = 8/547 (1%)

Query: 12   STTKPVQALVLS-------TQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNP 64
            S  K +Q LVLS        Q  +L+ + C  ILDK PDIK LKKLH++I I+  LHSNP
Sbjct: 1001 SAVKQLQTLVLSIQKPKFTQQXVVLTENLCGQILDKNPDIKYLKKLHSKICIDHDLHSNP 1060

Query: 65   SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
            S+G+KLMR Y  CG+   TRH+FDEI  KNVVFFNV+IRSYVNN+LY DAL V+KNM+ H
Sbjct: 1061 SLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGH 1120

Query: 125  GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
            G DPD YTYPCVLKA SGS  L VG+QIH +VV+VGLD N+F GNGL++MYGKCGCL EA
Sbjct: 1121 GIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEA 1180

Query: 185  RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
             RVL++MP +DVV+WNS+VAG A+NG+FD+AL+VC+EME L +KPDA TMASLLP+VTNT
Sbjct: 1181 CRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNT 1240

Query: 245  SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
              +NV  VKEMF+KL NK+LVSWNVMIAVY NNSMPAEAVD++LQME H ++P+AIS+AS
Sbjct: 1241 CLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIAS 1300

Query: 305  VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
            VLPACGDLSALLLGR+IH YV RK+LQPNL LENAL+DMYAKCG L  AR VFDQM+ +D
Sbjct: 1301 VLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRD 1360

Query: 365  VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
            VVSWTSMISAYGM+G+G DAV+LFS+M   GL PDSIAFVSVLSACSHAGLL+EGRYYFK
Sbjct: 1361 VVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFK 1420

Query: 425  IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNM 484
            +MTE+ K+VPRIEHF C+VDLLGRAG+V+EAY  IKQMPMEPNER+WG+L++AC +YSNM
Sbjct: 1421 LMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNM 1480

Query: 485  DIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEM 543
             IG+LAAD +F L P QSGYYVLLSNIYAKAGRW DV  VR  M +KGIKKMPG S  E+
Sbjct: 1481 IIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFEL 1540

Query: 544  NDQVQII 550
            +++V   
Sbjct: 1541 DNRVHTF 1547


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/549 (65%), Positives = 444/549 (80%), Gaps = 12/549 (2%)

Query: 1   MKAVVLLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHL 60
           MKA+  L R+F+T + +            + D CN ILD+YPDI TLKKLH +++ +Q+L
Sbjct: 1   MKAIASLSRYFATARQLS----------FTEDLCNRILDQYPDINTLKKLHGKVLNDQYL 50

Query: 61  HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKN 120
             NPS+G+KLMR Y ACG+    RH+FDEIT+KNVVFFNV+IRSYVNN+LY DAL VYK 
Sbjct: 51  RWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKT 110

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M   GF PD YTYPCVLKA S S+SL VGLQIH +V+K+GLD NL+ GNGL+AMYGKC  
Sbjct: 111 MYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKS 170

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           LKEA++VL+++P +DVV+WNSMV+ YAQNGRF++AL++CREME+L +KP+  TMASLLP+
Sbjct: 171 LKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPA 230

Query: 241 VTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
           VTNT+ +NVL VKEMFLKL  K+++SWNVMIA+Y NNSMP EAV LY QME +G+EP+ +
Sbjct: 231 VTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVV 290

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           S+ SVLPA GDLSAL LGR++H++ ERKKL PNL LENAL+DMYAKCG L +AR VF+QM
Sbjct: 291 SIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQM 350

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           + +DVVSWTS+ISAYG  GQG DAVA+F++M  SGL PDSIAFVSVL+ACSHAGLL++GR
Sbjct: 351 QFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGR 410

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
           YYF +M E   + P++EHFAC+VDLLGRAGK++EAY  I+QMP+EP+ER+WG L++AC +
Sbjct: 411 YYFNLMAE-CGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRV 469

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           YSNM+IGILAAD +  L P  SGYYVLLSNIYAKAGRW DV  +R  M  KGIKK+PG S
Sbjct: 470 YSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGIS 529

Query: 541 -VEMNDQVQ 548
            VE+ND V 
Sbjct: 530 NVELNDGVH 538


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/556 (63%), Positives = 442/556 (79%), Gaps = 8/556 (1%)

Query: 1   MKAVVLLCRHFSTTKPVQALVLST-------QYTLLSGDACNDILDKYPDIKTLKKLHAQ 53
           MKA++   R    +   + +V ST       +  + S +AC  ILD+YP IKTL KLH++
Sbjct: 1   MKAIIFCTRQILNSNKFRGIVSSTRIRFDRLKVEVFSKEACEVILDQYPGIKTLNKLHSK 60

Query: 54  IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
           I+IN+HL  +P++ +KLMR Y A G+    R++FD    KNVVFFNV+IRSYVNN LY +
Sbjct: 61  IVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVE 120

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           AL +++ M    F+PD YT+PCVLKACSG ++L VGLQ+H ++VKVGLD NLF GN LVA
Sbjct: 121 ALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVA 180

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MYGKCGCL+EAR+VL+ MP +DVV+WNSMVAGYAQ+G+FD+AL++C+EM+SL +  DA T
Sbjct: 181 MYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGT 240

Query: 234 MASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
           MASL P V  TS ENV  +  MF ++  KNL+SWNVMIA+Y NNSMP EAV L+LQME  
Sbjct: 241 MASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEEC 300

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
           G++P+A+++AS+LPACGDLSAL LGR++H+Y+E+  L+PNL LENAL+DMYAKCG L EA
Sbjct: 301 GMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEA 360

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
           R VFD+MR +DVVSWTSM+SAYG SGQGYDAVALF+KML SG  PDSIAFVSVLSACSH 
Sbjct: 361 RDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHT 420

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           GLL++GR+YF++MTEQY +VPRIEHFAC+VDL GRAG+VEEAY  IKQMPMEPNER+WG+
Sbjct: 421 GLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGA 480

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           L++AC ++S MDIG++AAD +F LAP QSGYYVLLSNIYAKAG W DV  VR  M   GI
Sbjct: 481 LLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGI 540

Query: 534 KKMPGAS-VEMNDQVQ 548
           KK+PG S VE+N QV 
Sbjct: 541 KKVPGISNVELNGQVH 556


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/556 (63%), Positives = 440/556 (79%), Gaps = 8/556 (1%)

Query: 1   MKAVVLLCRHFSTTKPVQALVLST-------QYTLLSGDACNDILDKYPDIKTLKKLHAQ 53
           MKA++   R    +   +  V  T       +  + S +AC  ILD+YP IKTL KLH++
Sbjct: 1   MKAIIFCTRQILNSNKFRGFVSLTRIRFDRLKVEVFSKEACEVILDQYPGIKTLNKLHSK 60

Query: 54  IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
           I+IN+HL  +P++ +KLMR Y A G+    R++FD    KNVVFFNV+IRSYVNN LY +
Sbjct: 61  IVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVE 120

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           AL +++ M    F+PD YT+PCVLKACSG ++L VGLQ+H ++VKVGLD NLF GN LVA
Sbjct: 121 ALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVA 180

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MYGKCGCL+EAR+VL+ MP +DVV+WNSMVAGYAQ+G+FD+AL++C+EM+SL +  DA T
Sbjct: 181 MYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGT 240

Query: 234 MASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
           MASL P V  TS ENV  +  MF ++  KNL+SWNVMIA+Y NNSMP EAV L+LQME  
Sbjct: 241 MASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEEC 300

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
           G++P+A+++AS+LPACGDLSAL LGR++H+Y+E+  LQPNL LENAL+DMYAKCG L EA
Sbjct: 301 GMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEA 360

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
           R VFD+MR +DVVSWTSM+SAYG SGQGYDAVALF+KML SG  PDSIAFVSVLSACSH 
Sbjct: 361 RDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHT 420

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           GLL++GR+YF++MTEQY +VPRIEHFAC+VDL GRAG+VEEAY  IKQMPMEPNER+WG+
Sbjct: 421 GLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGA 480

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           L++AC ++S MDIG++AAD +F LAP QSGYYVLLSNIYAKAG W DV  VR  M   GI
Sbjct: 481 LLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGI 540

Query: 534 KKMPGAS-VEMNDQVQ 548
           KK+PG S VE+N QV 
Sbjct: 541 KKVPGISNVELNGQVH 556


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/540 (64%), Positives = 442/540 (81%), Gaps = 9/540 (1%)

Query: 17  VQALVLSTQYTLLSG-------DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLK 69
           +QALV S + +L+S        +    +LD+YPDIKTLK +H+++  N   H NPS+G+K
Sbjct: 14  LQALVSSIRKSLVSPQNPVLVLELLGKVLDQYPDIKTLKNVHSKVF-NLSFHENPSLGIK 72

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           LMR Y A G+    R+VFD I  +NV+F+NV+IRSY+NN+LY DAL V+++M   GF PD
Sbjct: 73  LMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPD 132

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            YTYPCVLKACS S++L +GLQ+H +V KVGLD NLF GNGL+A+YGKCGCL EAR VL+
Sbjct: 133 HYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLD 192

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
           +M SKDVV+WNSMVAGYAQN +FD+ALD+CREM+ +R KPDA TMASLLP+VTNTS ENV
Sbjct: 193 EMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENV 252

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
           L V+EMF+ L+ K+LVSWNVMI+VY  NSMP ++VDLYLQM    +EP+AI+ ASVL AC
Sbjct: 253 LYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRAC 312

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
           GDLSALLLGR+IH YVERKKL PN+ LEN+L+DMYA+CG L +A+ VFD+M+ +DV SWT
Sbjct: 313 GDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWT 372

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           S+ISAYGM+GQGY+AVALF++M  SG  PDSIAFV++LSACSH+GLL EG++YFK MT+ 
Sbjct: 373 SLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDD 432

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           YK+ P IEHFACLVDLLGR+G+V+EAY++IKQMPM+PNER+WG+L+++C +YSNMDIGIL
Sbjct: 433 YKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGIL 492

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           AAD +  LAP +SGYYVLLSNIYAKAGRW +V  +R  M  + I+KMPG S VE+N+QV 
Sbjct: 493 AADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVH 552


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/512 (66%), Positives = 423/512 (82%), Gaps = 2/512 (0%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
           LD+ PDIKTLKKLH  +I   + H NPS+G+KLMR+Y ACG+   TR VFDE++++NVVF
Sbjct: 28  LDQNPDIKTLKKLHT-MIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVF 86

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +NV+IRSYVNN+ Y D L V++ M   GF PD YTYPCVLKACS S +L  GL IH  V+
Sbjct: 87  YNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVL 146

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           KVGLD+NLF GNGL+AMYGKCGCL EARRV ++M  KDVV+WNSMVAGYA N RFD+AL+
Sbjct: 147 KVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALE 206

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
           +CREME    KPD  TMASL+P+V NTS ENVL V+++F+ L+ KNL+SWNVMI VY  N
Sbjct: 207 ICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKN 266

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
           S+P +AVDLYLQME   +EP+AI+ ASVLPACGDLSALLLGR+IH YVE+KKL PNL LE
Sbjct: 267 SLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLE 326

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
           N+L+DMYA+CG L +A+ VFD+M+ +DV SWTS+ISAYGM+GQG +AVALF++ML SG  
Sbjct: 327 NSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQA 386

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
           PDSIAFV++LSACSH+GLL+EGR YFK MT+ Y++ PRIEH+ACLVDLLGRAG+V+EAY+
Sbjct: 387 PDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYN 446

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
           +IKQMP+EPNER+W +L+++C +++NMDIGILAAD++  LAP QSGYYVLLSNIYAKAGR
Sbjct: 447 IIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGR 506

Query: 518 WGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           W +V  +R  M  K I+K PG S VE+N+QV 
Sbjct: 507 WKEVTEIRSVMKRKKIRKTPGISNVELNNQVH 538


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/521 (63%), Positives = 407/521 (78%), Gaps = 2/521 (0%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +LD YPD+KTL+ +H++II ++ L  N S+G+KLMR Y +   +   R VFDEI  +NV+
Sbjct: 49  VLDTYPDLKTLRTVHSRII-SEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVI 107

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
             NV+IRSYVNN  Y + + V+  M      PD YT+PCVLKACS S ++++G +IH S 
Sbjct: 108 IINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSA 167

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
            KVGL   LF GNGLV+MYGKCG L EAR VL++M  +DVV+WNS+VAGYAQN RFD+AL
Sbjct: 168 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDAL 227

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
           +VCREMES++I  DA TMASLLP+V+NT+ ENV+ VK+MF K+  K+LVSWNVMI VY  
Sbjct: 228 EVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 287

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N+MP EAV+LY  ME  G EP+A+S+ SVLPACGD SAL LG+KIH Y+ERKKL PNL L
Sbjct: 288 NAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLL 347

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
           ENAL+DMYAKCG L  AR VF+ M+ +DVVSWT+MISAYG SG+G DAVALFSKM  SGL
Sbjct: 348 ENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGL 407

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PDSIAFV+ L+ACSHAGLLEEGR  FK+MT+ YK+ PR+EH AC+VDLLGRAGKV+EAY
Sbjct: 408 VPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAY 467

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
             I++MPMEPNER+WG+L+ AC ++SN DIG+LAAD +F LAP QSGYYVLLSNIYAKAG
Sbjct: 468 KFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAG 527

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           RW +V  +R  M SKG+KK PGAS VE+N  +    +  RS
Sbjct: 528 RWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRS 568


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/521 (62%), Positives = 406/521 (77%), Gaps = 2/521 (0%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +LD YPDI+TL+ +H++II+ + L  N S+G+KLMR Y +   +   R VFDEI  +NV+
Sbjct: 48  VLDTYPDIRTLRTVHSRIIL-EDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVI 106

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
             NV+IRSYVNN  Y + + V+  M      PD YT+PCVLKACS S ++++G +IH S 
Sbjct: 107 IINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA 166

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
            KVGL   LF GNGLV+MYGKCG L EAR VL++M  +DVV+WNS+V GYAQN RFD+AL
Sbjct: 167 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDAL 226

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
           +VCREMES++I  DA TMASLLP+V+NT+ ENV+ VK+MF K+  K+LVSWNVMI VY  
Sbjct: 227 EVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 286

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N+MP EAV+LY +ME  G EP+A+S+ SVLPACGD SAL LG+KIH Y+ERKKL PNL L
Sbjct: 287 NAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLL 346

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
           ENAL+DMYAKCG L +AR VF+ M+ +DVVSWT+MISAYG SG+G DAVALFSK+  SGL
Sbjct: 347 ENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGL 406

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PDSIAFV+ L+ACSHAGLLEEGR  FK+MT+ YK+ PR+EH AC+VDLLGRAGKV+EAY
Sbjct: 407 VPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAY 466

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
             I+ M MEPNER+WG+L+ AC ++S+ DIG+LAAD +F LAP QSGYYVLLSNIYAKAG
Sbjct: 467 RFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAG 526

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           RW +V  +R  M SKG+KK PGAS VE+N  +    +  RS
Sbjct: 527 RWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRS 567


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/521 (62%), Positives = 406/521 (77%), Gaps = 2/521 (0%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +LD YPDI+TL+ +H++II+ + L  N S+G+KLMR Y +   +   R VFDEI  +NV+
Sbjct: 48  VLDTYPDIRTLRTVHSRIIL-EDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVI 106

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
             NV+IRSYVNN  Y + + V+  M      PD YT+PCVLKACS S ++++G +IH S 
Sbjct: 107 IINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA 166

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
            KVGL   LF GNGLV+MYGKCG L EAR VL++M  +DVV+WNS+V GYAQN RFD+AL
Sbjct: 167 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDAL 226

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
           +VCREMES++I  DA TMASLLP+V+NT+ ENV+ VK+MF K+  K+LVSWNVMI VY  
Sbjct: 227 EVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 286

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N+MP EAV+LY +ME  G EP+A+S+ SVLPACGD SAL LG+KIH Y+ERKKL PNL L
Sbjct: 287 NAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLL 346

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
           ENAL+DMYAKCG L +AR VF+ M+ +DVVSWT+MISAYG SG+G DAVALFSK+  SGL
Sbjct: 347 ENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGL 406

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PDSIAFV+ L+ACSHAGLLEEGR  FK+MT+ YK+ PR+EH AC+VDLLGRAGKV+EAY
Sbjct: 407 VPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAY 466

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
             I+ M MEPNER+WG+L+ AC ++S+ DIG+LAAD +F LAP QSGYYVLLSNIYAKAG
Sbjct: 467 RFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAG 526

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           RW +V  +R  M SKG+KK PGAS VE+N  +    +  RS
Sbjct: 527 RWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRS 567


>gi|297819530|ref|XP_002877648.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297323486|gb|EFH53907.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 786

 Score =  576 bits (1485), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 287/472 (60%), Positives = 349/472 (73%), Gaps = 19/472 (4%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VFDEI  +NV+  NV+IRSYVNN  Y + + V+  M      PD YT+PCVLKACS S +
Sbjct: 1   VFDEIPERNVIIINVMIRSYVNNGFYREGIQVFVTMCSCHVKPDHYTFPCVLKACSCSGN 60

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           +++G +IH S  KVGL   LF GNGLV+MYGKCG L EAR VL++M  +DVV+WNS+VAG
Sbjct: 61  IVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAG 120

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           YAQN RFD+AL+VCREMES++I  DA TMASLLP+V+NT+ ENV+ VK+MF K+  K+LV
Sbjct: 121 YAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLV 180

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           SWNVMI VY  N+MP EAV+LY  ME  G EP+A+S+ SVLPACGD SAL LG+KIH Y+
Sbjct: 181 SWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYI 240

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
           ERKKL PNL LENAL+DMYAKCG L  AR VF+ M+ +DVVSWT+MISAYG SG+G DAV
Sbjct: 241 ERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAV 300

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
           ALFSKM  SGL PDSIAFV+ L+ACSHAGLLEEGR  FK+MT+ YK+ PR+EH AC+VDL
Sbjct: 301 ALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDL 360

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           LGRAGK++EAY  I++       R +G L A C L                   +QSGYY
Sbjct: 361 LGRAGKMKEAYKFIQECQWNQT-REFGEL-ARCILTQT----------------SQSGYY 402

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           VLLSNIYAKAGRW +   +R  M SKG+KK PGAS VE+N ++    +  RS
Sbjct: 403 VLLSNIYAKAGRWEEETNIRNIMKSKGLKKNPGASNVEVNREIHTFLVGDRS 454



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 94/160 (58%)

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
           + +F ++  K++V +NV+I  Y+ N +  +A+ +Y  M   GF+PD  +   VL AC  +
Sbjct: 168 KDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDT 227

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
           ++L +G +IH  + +  L  NL   N L+ MY KCGCL  AR V  +M S+DVV+W +M+
Sbjct: 228 SALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMI 287

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           + Y  +GR  +A+ +  +M+   + PD+    + L + ++
Sbjct: 288 SAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSH 327



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 146/345 (42%), Gaps = 76/345 (22%)

Query: 52  AQIIINQHLHSNPS---------IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
             I+I + +H + +         +G  L+  YG CG + + R V DE++ ++VV +N L+
Sbjct: 59  GNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLV 118

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             Y  N  + DAL V + M       D  T   +L A S + +  V              
Sbjct: 119 AGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV-------------- 164

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
                      MY K    K        M  K +V+WN M+  Y +N    EA+++   M
Sbjct: 165 -----------MYVKDMFFK--------MGKKSLVSWNVMIGVYMKNAMPVEAVELYSGM 205

Query: 223 ESLRIKPDADTMASLLPSVTNTSP----------------------ENVL---------- 250
           E+   +PDA ++ S+LP+  +TS                       EN L          
Sbjct: 206 EADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCL 265

Query: 251 -SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
              +++F  + ++++VSW  MI+ Y  +    +AV L+ +M+  G+ P++I+  + L AC
Sbjct: 266 DRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAAC 325

Query: 310 GDLSALLLGRKIHRYV-ERKKLQPNLRLENALVDMYAKCGSLTEA 353
                L  GR   + + +  K+ P L     +VD+  + G + EA
Sbjct: 326 SHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKMKEA 370


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 258/517 (49%), Positives = 363/517 (70%), Gaps = 13/517 (2%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIG---LKLMRTYGACGQMVDTRHVF-----DEITNKNV 95
           + +L+  HA++++  H  S+PS     +KL++ Y AC  +     V      D  +    
Sbjct: 28  LPSLRAAHARLLVLLH-PSHPSAAHANVKLIQAYAACSALPLAHTVLESSSPDGRSRTTT 86

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD--PDCYTYPCVLKACSGSNSLLVGLQIH 153
           V FNVLIR+   + L+ DAL ++ +M   G    PD YTYP  LK+CS S  LL+GLQIH
Sbjct: 87  VCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLGLQIH 146

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
            +V K+ LD N++  +  ++MY +CG  ++A RV + MP +DVV+WN+M+AG+A+ G FD
Sbjct: 147 SAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFD 206

Query: 214 EALDVCREMESLRIK-PDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIA 272
            A++V ++   L+   PDA TMA +LP++ N  P+++  V+ +F  +  K L+SWN M+A
Sbjct: 207 RAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFKELISWNAMLA 266

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
           VYANN    +AV+L++ ME   +EP++I++A+VLP CG+LSA  +G++IH  ++RK + P
Sbjct: 267 VYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCP 326

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           NL LENAL+DMYA CG L +AR +FD M  +DV+SWTS+ISAYG  G G +AV LF KML
Sbjct: 327 NLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKML 386

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
             GL PDSIAFV+VL+ACSHAGLL +G++YF  MT +Y ++P+ EH+ C+VDLLGRAG +
Sbjct: 387 GQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCI 446

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
            EAYD I  M +EPNER+WG+L+ AC ++SNMDIG++AAD++F L P Q+GYYVLLSN+Y
Sbjct: 447 NEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMY 506

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           A+AGRW DV  VR  M +KGIKK PG S VE+ DQV 
Sbjct: 507 ARAGRWADVTSVRSVMVNKGIKKFPGTSIVELGDQVH 543


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 255/512 (49%), Positives = 368/512 (71%), Gaps = 7/512 (1%)

Query: 44  IKTLKKLHAQIIINQHLHSNPS---IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           +++L+  HA+++    L S+P+   + +KL++ Y AC  +   R V D   ++  VFFNV
Sbjct: 31  LRSLRAAHARLLFLLRLPSHPASAAVRVKLIQAYAACAALPAARAVLDASPDRTTVFFNV 90

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFD--PDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
           L+R      L+ DAL ++ +M   G    PD YTYP  LK+C+ ++ L++G QIH S  +
Sbjct: 91  LLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVLGRQIHSSTAR 150

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
           +GLD N+F  +  ++MY +CG   +A ++  +M  +DVV+WN+M++G+A  G F  A+DV
Sbjct: 151 LGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDV 210

Query: 219 CREMESLRI-KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
            RE+ +L+  KPDA TMAS+LPS+     E++  +K +F ++  K L+SWN M+AVY NN
Sbjct: 211 FRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNN 270

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
            M  EAV+L+++M+  GIEP+A+++A+VLP+CG++SAL LG++IH  ++R+++  ++ LE
Sbjct: 271 EMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLE 330

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
           NAL+DMYA CG L EAR VFD M  +DVVSWTS+ISAYG  G G +A+ LF KM   GL 
Sbjct: 331 NALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLE 390

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
           PDSIAFV++L+ACSHAGLL+ G++YF  MT ++ + P++EH+AC+VDLLGRAG + EAYD
Sbjct: 391 PDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYD 450

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
            I  MP++PNER+WG+L+ AC ++SNMDIG+LAAD +  LAP Q+GYYVLLSNIYA+AGR
Sbjct: 451 FIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGR 510

Query: 518 WGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           W DV  VR  M SKGIKK+PG S  E+ D+V 
Sbjct: 511 WADVSMVRSVMESKGIKKLPGVSNAELGDRVH 542


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 224/426 (52%), Positives = 316/426 (74%), Gaps = 2/426 (0%)

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G  P     P   K+C+ ++ L++G QIH S  ++GLD N+F  +  ++MY +CG   +A
Sbjct: 7   GLLPGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDA 66

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI-KPDADTMASLLPSVTN 243
            ++  +M  +DVV+WN+M++G+A  G F  A+DV RE+ +L+  KPDA TMAS+LPS+  
Sbjct: 67  YQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGK 126

Query: 244 TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
              E++  +K +F ++  K L+SWN M+AVY NN M  EAV+L+++M+  GIEP+A+++A
Sbjct: 127 ARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLA 186

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           +VLP+CG++SAL LG++IH  ++R+++  ++ LENAL+DMYA CG L EAR VFD M  +
Sbjct: 187 TVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTR 246

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           DVVSWTS+ISAYG  G G +A+ LF KM   GL PDSIAFV++L+ACSHAGLL+ G++YF
Sbjct: 247 DVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYF 306

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
             MT ++ + P++EH+AC+VDLLGRAG + EAYD I  MP++PNER+WG+L+ AC ++SN
Sbjct: 307 YSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSN 366

Query: 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VE 542
           MDIG+LAAD +  LAP Q+GYYVLLSNIYA+AGRW DV  VR  M SKGIKK+PG S  E
Sbjct: 367 MDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAE 426

Query: 543 MNDQVQ 548
           + D+V 
Sbjct: 427 LGDRVH 432



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VFDE+  K ++ +N ++  Y NN ++ +A+ ++  M   G +PD  T   VL +C   ++
Sbjct: 138 VFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSA 197

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           L +G +IH  + +  +  ++   N L+ MY  CGCLKEAR V + M ++DVV+W S+++ 
Sbjct: 198 LSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISA 257

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK--- 262
           Y ++G   EA+D+  +M    ++PD+    ++L + ++    ++   K  F  + ++   
Sbjct: 258 YGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDM--GKHYFYSMTSEFHI 315

Query: 263 --NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
              L  +  M+ +        EA D  + M    I+PN     ++L AC
Sbjct: 316 APKLEHYACMVDLLGRAGCIREAYDFIMVMP---IKPNERVWGALLGAC 361



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 138/329 (41%), Gaps = 68/329 (20%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
           L  N  +    +  Y  CG+  D   +F+E+  ++VV +N +I  + +  L+  A+ V++
Sbjct: 43  LDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFR 102

Query: 120 NM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC 178
            + ++    PD  T   +L +   +                  D  L  G          
Sbjct: 103 ELVALQCPKPDAGTMASILPSMGKARV---------------EDIALLKG---------- 137

Query: 179 GCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238
                   V ++M  K +++WN+M+A Y  N    EA+++   M+   I+PDA T+A++L
Sbjct: 138 --------VFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVL 189

Query: 239 PSVTNTSP----------------------ENVL-----------SVKEMFLKLDNKNLV 265
           PS    S                       EN L             +++F  +  +++V
Sbjct: 190 PSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVV 249

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK-IHRY 324
           SW  +I+ Y  +    EA+DL+ +M   G+EP++I+  ++L AC     L +G+   +  
Sbjct: 250 SWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSM 309

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEA 353
                + P L     +VD+  + G + EA
Sbjct: 310 TSEFHIAPKLEHYACMVDLLGRAGCIREA 338



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 93/196 (47%), Gaps = 5/196 (2%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H ++I  + + S+  +   LM  Y  CG + + R VFD +  ++VV +  +I +Y  
Sbjct: 202 KRIH-EVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGR 260

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV-KVGLDYNLF 166
           +    +A+ +++ M   G +PD   +  +L ACS +  L +G     S+  +  +   L 
Sbjct: 261 HGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLE 320

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           +   +V + G+ GC++EA   +  MP K +   W +++     +   D  L     +  L
Sbjct: 321 HYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSL--L 378

Query: 226 RIKPDADTMASLLPSV 241
           R+ P       LL ++
Sbjct: 379 RLAPKQTGYYVLLSNI 394


>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
          Length = 614

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/377 (54%), Positives = 286/377 (75%), Gaps = 2/377 (0%)

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI-KPDAD 232
           MY +CG   +A ++  +M  +DVV+WN+M++G+A  G F  A+DV RE+ +L+  KPDA 
Sbjct: 1   MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60

Query: 233 TMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
           TMAS+LPS+     E++  +K +F ++    L+SWN M+AVY NN M  EAV+L+++M+ 
Sbjct: 61  TMASILPSMGKARVEDIALLKGVFDEMRFTGLISWNAMLAVYTNNEMHVEAVELFMRMQK 120

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
            GIEP+A+++A+VLP+CG++SAL LG++IH  ++R+++  ++ LENAL+DMYA CG L E
Sbjct: 121 DGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKE 180

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           AR VFD M  +DVVSWTS+ISAYG  G G +A+ LF KM   GL PDSIAFV++L+ACSH
Sbjct: 181 ARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSH 240

Query: 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG 472
           AGLL+ G++YF  MT ++ + P++EH+AC+VDLLGRAG + EAYD I  MP++PNER+WG
Sbjct: 241 AGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWG 300

Query: 473 SLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532
           +L+ AC ++SNMDIG+LAAD +  LAP Q+GYYVLLSNIYA+AGRW DV  VR  M SKG
Sbjct: 301 ALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKG 360

Query: 533 IKKMPGAS-VEMNDQVQ 548
           IKK+PG S  E+ D V 
Sbjct: 361 IKKLPGVSNAELGDSVH 377



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 119/229 (51%), Gaps = 10/229 (4%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VFDE+    ++ +N ++  Y NN ++ +A+ ++  M   G +PD  T   VL +C   ++
Sbjct: 83  VFDEMRFTGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSA 142

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           L +G +IH  + +  +  ++   N L+ MY  CGCLKEAR V + M ++DVV+W S+++ 
Sbjct: 143 LSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISA 202

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK--- 262
           Y ++G   EA+D+  +M    ++PD+    ++L + ++    ++   K  F  + ++   
Sbjct: 203 YGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDM--GKHYFYSMTSEFHI 260

Query: 263 --NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
              L  +  M+ +        EA D  + M    I+PN     ++L AC
Sbjct: 261 APKLEHYACMVDLLGRAGCIREAYDFIMVMP---IKPNERVWGALLGAC 306



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 133/315 (42%), Gaps = 68/315 (21%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYT 132
           Y  CG+  D   +F+E+  ++VV +N +I  + +  L+  A+ V++ + ++    PD  T
Sbjct: 2   YARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGT 61

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
              +L +   +                  D  L  G                  V ++M 
Sbjct: 62  MASILPSMGKARV---------------EDIALLKG------------------VFDEMR 88

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP------ 246
              +++WN+M+A Y  N    EA+++   M+   I+PDA T+A++LPS    S       
Sbjct: 89  FTGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKR 148

Query: 247 ----------------ENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSM 279
                           EN L             +++F  +  +++VSW  +I+ Y  +  
Sbjct: 149 IHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGH 208

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK-IHRYVERKKLQPNLRLEN 338
             EA+DL+ +M   G+EP++I+  ++L AC     L +G+   +       + P L    
Sbjct: 209 GREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYA 268

Query: 339 ALVDMYAKCGSLTEA 353
            +VD+  + G + EA
Sbjct: 269 CMVDLLGRAGCIREA 283



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 93/196 (47%), Gaps = 5/196 (2%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H ++I  + + S+  +   LM  Y  CG + + R VFD +  ++VV +  +I +Y  
Sbjct: 147 KRIH-EVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGR 205

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV-KVGLDYNLF 166
           +    +A+ +++ M   G +PD   +  +L ACS +  L +G     S+  +  +   L 
Sbjct: 206 HGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLE 265

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           +   +V + G+ GC++EA   +  MP K +   W +++     +   D  L     +  L
Sbjct: 266 HYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSL--L 323

Query: 226 RIKPDADTMASLLPSV 241
           R+ P       LL ++
Sbjct: 324 RLAPKQTGYYVLLSNI 339


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/532 (40%), Positives = 325/532 (61%), Gaps = 34/532 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++  +K+H  II  +   S+  +G  L   Y  CG + + R VFD +  ++VV +N +I
Sbjct: 135 DLQAGRKVHEDIIA-RGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAII 193

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             Y  N   Y+AL ++  M V+G  P+  T   V+  C+   +L  G QIHC  ++ G++
Sbjct: 194 AGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIE 253

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++   NGLV MY KCG +  A ++   MP +DV +WN+++ GY+ N +  EAL     M
Sbjct: 254 SDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRM 313

Query: 223 ESLRIKPDADTMASLLPSVTN---------------------------------TSPENV 249
           +   IKP++ TM S+LP+  +                                     NV
Sbjct: 314 QVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNV 373

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            S  ++F ++  KN+V+WN +I+ Y+ +  P EA+ L+++M+  GI+P++ ++ SVLPAC
Sbjct: 374 NSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPAC 433

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
               AL  G++IH Y  R   + N+ +   LVD+YAKCG++  A+ +F++M  QDVVSWT
Sbjct: 434 AHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWT 493

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           +MI AYG+ G G DA+ALFSKM  +G   D IAF ++L+ACSHAGL+++G  YF+ M   
Sbjct: 494 TMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSD 553

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y L P++EH+ACLVDLLGRAG ++EA  +IK M +EP+  +WG+L+ AC ++ N+++G  
Sbjct: 554 YGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQ 613

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           AA H+F L P+ +GYYVLLSNIYA+A RW DV ++RK M  KG+KK PG SV
Sbjct: 614 AAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSV 665



 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 159/474 (33%), Positives = 249/474 (52%), Gaps = 56/474 (11%)

Query: 68  LKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD 127
           +K  R   AC     T+    +I N  VV+   +I  YV N  +  AL +Y  M   G +
Sbjct: 61  VKTTREVSACAN--QTQFTQTDIRNNAVVWKETII-GYVKNGFWNKALRLYYQMQRTGIN 117

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           PD   +  V+KAC   + L  G ++H  ++  G + ++  G  L +MY KCG L+ AR+V
Sbjct: 118 PDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQV 177

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP-------- 239
            + MP +DVV+WN+++AGY+QNG+  EAL +  EM+   IKP++ T+ S++P        
Sbjct: 178 FDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLAL 237

Query: 240 -----------------------SVTNTSPE--NVLSVKEMFLKLDNKNLVSWNVMIAVY 274
                                   + N   +  NV +  ++F ++  +++ SWN +I  Y
Sbjct: 238 EQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGY 297

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           + NS   EA+  + +M+V GI+PN+I++ SVLPAC  L AL  G++IH Y  R   + N 
Sbjct: 298 SLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESND 357

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + NALV+MYAKCG++  A  +F++M  ++VV+W ++IS Y   G  ++A+ALF +M   
Sbjct: 358 VVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQ 417

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGR----YYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450
           G+ PDS A VSVL AC+H   LE+G+    Y  +   E   +V        LVD+  + G
Sbjct: 418 GIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVG-----TGLVDIYAKCG 472

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLV----------AACCLYSNMDIGILAADHI 494
            V  A  L ++MP E +   W +++           A  L+S M       DHI
Sbjct: 473 NVNTAQKLFERMP-EQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHI 525


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/561 (38%), Positives = 330/561 (58%), Gaps = 36/561 (6%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD-TRHVFDEITNK 93
           N +L+    +  L ++HA ++ N     N  +  KL+ T       +D  R +FD++  +
Sbjct: 33  NYLLNCCSSLPDLSRIHALVVTNG-CGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKR 91

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           +V  +N LIR Y +     +AL +Y NM   G  PD YT+P V+++C+  ++L  G ++H
Sbjct: 92  DVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVH 151

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
           C++VK G D ++F  + LVAMY + G       V  +M  +++V+W +++AGY QN  F 
Sbjct: 152 CNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFK 211

Query: 214 EALDVCREMESLRIKPDADTMASLLP---------------------------SVTNT-- 244
           E L V REM     +P+A T+ S+LP                           S+TN   
Sbjct: 212 EGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALI 271

Query: 245 ----SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                  NV + + +F  +  +NLVSWN MIA Y  N+  A AV L+ +M+   ++ + I
Sbjct: 272 ALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYI 331

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           ++ SV+ AC  L AL  GR +H  V+RK L+ N+ + NAL+DMYAKCG++  AR VF+++
Sbjct: 332 TMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERL 391

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
            C+ VVSWTSMI A    G G DA+ LFS+M   G+ P+S  F +V +AC H+GL+EEGR
Sbjct: 392 PCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGR 451

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
            +F+ M   Y ++P +EH AC+VDLLGRAG + EAY+ I +MP+EP+  +WG+L+ +C +
Sbjct: 452 KHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRI 511

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           +SN+++  L A+ +F L P    +YVL+SNIYA+AGRW D  R+RK M  + +KK+PG S
Sbjct: 512 HSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHS 571

Query: 541 -VEMNDQVQIIALPLRSSKCL 560
            VE+N +        RS   L
Sbjct: 572 LVEVNRRFHTFLSGSRSQSSL 592


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/502 (40%), Positives = 313/502 (62%), Gaps = 7/502 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           KK+H   + N   +++ S+  KL R Y +C Q+V  R +FDEI N +V+ +N +IR+Y  
Sbjct: 28  KKIHQHFLKNTS-NADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAW 86

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N  +  A+ +Y +M   G  P+ YTYP VLKACSG  ++  G++IH      GL+ ++F 
Sbjct: 87  NGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFV 146

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              LV  Y KCG L EA+R+ + M  +DVV WN+M+AG +  G  D+A+ +  +M+   I
Sbjct: 147 CTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGI 206

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
            P++ T+  +LP+      + +L  +++F  +  +N VSW+ MI  Y  +    EA+D++
Sbjct: 207 CPNSSTIVGVLPTC-----QCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIF 261

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
             M++ GI+P+  ++  VLPAC  L+AL  G   H Y+  +    +  + NAL+DMY+KC
Sbjct: 262 RMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKC 321

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           G ++ AR VF++M   D+VSW +MI  YG+ G G +A+ LF  +L  GL PD I F+ +L
Sbjct: 322 GKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLL 381

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
           S+CSH+GL+ EGR +F  M+  + +VPR+EH  C+VD+LGRAG ++EA+  I+ MP EP+
Sbjct: 382 SSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPD 441

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527
            RIW +L++AC ++ N+++G   +  I  L P  +G +VLLSNIY+ AGRW D   +R  
Sbjct: 442 VRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRIT 501

Query: 528 MNSKGIKKMPGAS-VEMNDQVQ 548
               G+KK+PG S +E+N  V 
Sbjct: 502 QKDWGLKKIPGCSWIEINGIVH 523



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 6/183 (3%)

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           +L AC    +L   +KIH++  +     +  + + L  +Y  C  +  AR +FD++    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
           V+ W  +I AY  +G    A+ L+  ML  G+ P+   +  VL ACS    +E+G    +
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG---VE 130

Query: 425 IMTEQYKLVPRIEHFAC--LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           I +         + F C  LVD   + G + EA  L   M    +   W +++A C LY 
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLYG 189

Query: 483 NMD 485
             D
Sbjct: 190 LCD 192


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/542 (36%), Positives = 327/542 (60%), Gaps = 36/542 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           DI+  ++LH  +  +    ++  +  +++  Y  CG   D+R VFD++  KN+  +N ++
Sbjct: 120 DIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIV 179

Query: 103 RSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
            +Y  N L+ DA+ ++  + SV    PD +T PCV+KAC+G   L +G  IH    K+ L
Sbjct: 180 SAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDL 239

Query: 162 DYNLFNGNGLVAMYGKCGCLKEA-RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
             ++F GN L+AMYGKCG ++EA +RV + M +K V +WN+++ GYAQN    +ALD+  
Sbjct: 240 VSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYL 299

Query: 221 EMESLRIKPDADTMASLL------------PSVTNTSPENVLSV---------------- 252
           +M    + PD  T+ SLL              +   +  N L+V                
Sbjct: 300 QMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCG 359

Query: 253 -----KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                + +F  +++++LVSWNVMIA Y+ N +P EA++L+ QM   GI+P  I++  V  
Sbjct: 360 KPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCG 419

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           AC  LSAL LG+++H +  +  L  ++ + ++++DMYAK G +  ++ +FD++R +DV S
Sbjct: 420 ACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVAS 479

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W  +I+ YG+ G+G +A+ LF KML  GL PD   F  +L ACSHAGL+E+G  YF  M 
Sbjct: 480 WNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQML 539

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
             + + P++EH+ C+VD+LGRAG++++A  LI++MP +P+ RIW SL+++C ++ N+ +G
Sbjct: 540 NLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLG 599

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
              A+ +  L P +   YVL+SN++A +G+W DV+RVR  M   G++K  G S +E+  +
Sbjct: 600 EKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGK 659

Query: 547 VQ 548
           V 
Sbjct: 660 VH 661



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 186/369 (50%), Gaps = 21/369 (5%)

Query: 6   LLCRHFSTTKPVQALVLSTQYTLLSGD----ACNDILDKYPDIKTL---KKLHAQIIINQ 58
           LLC +   + P +AL L  Q T    D        +L     +K+L   +++H   + N 
Sbjct: 281 LLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNG 340

Query: 59  HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVY 118
            L  +P IG+ L+  Y  CG+    + +FD + ++++V +NV+I  Y  N L  +A++++
Sbjct: 341 -LAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLF 399

Query: 119 KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC 178
           + M   G  P      CV  ACS  ++L +G ++HC  +K  L  ++F  + ++ MY K 
Sbjct: 400 RQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKG 459

Query: 179 GCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238
           GC+  ++R+ + +  KDV +WN ++AGY  +GR  EAL++  +M  L +KPD  T   +L
Sbjct: 460 GCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGIL 519

Query: 239 PSVTNTS-PENVLSVKEMFLKLDN--KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
            + ++    E+ L      L L N    L  +  ++ +        +A+ L  +M     
Sbjct: 520 MACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPG--- 576

Query: 296 EPNAISVASVLPACGDLSALLLGRKI-HRYVERKKLQPNLRLENALV--DMYAKCGSLTE 352
           +P++   +S+L +C     L LG K+ ++ +E +  +P    EN ++  +++A  G   +
Sbjct: 577 DPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKP----ENYVLISNLFAGSGKWDD 632

Query: 353 ARTVFDQMR 361
            R V  +M+
Sbjct: 633 VRRVRGRMK 641



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 106/211 (50%), Gaps = 12/211 (5%)

Query: 282 EAVDLYLQMEVHGI----EPNAISVASVLPACGDLSALLLGRKIHRYVE-RKKLQPNLRL 336
           EA+D +LQ E   +       + ++  +L ACG    + +GR++H  V    +   +  L
Sbjct: 85  EALD-FLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVL 143

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML-MSG 395
              ++ MY+ CGS +++R VFD++R +++  W +++SAY  +    DA+++FS+++ ++ 
Sbjct: 144 NTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTE 203

Query: 396 LCPDSIAFVSVLSACSHAGLLEEG-RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
             PD+     V+ AC  AGLL+ G       M  +  LV  +     L+ + G+ G VEE
Sbjct: 204 HKPDNFTLPCVIKAC--AGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEE 261

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           A   +  +        W +L+  C    N D
Sbjct: 262 AVKRVFDLMDTKTVSSWNALL--CGYAQNSD 290


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/548 (36%), Positives = 321/548 (58%), Gaps = 36/548 (6%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           + +LD     + L ++HAQ++++  + S   +  K +      G++   R VFDE    +
Sbjct: 75  SSLLDHSVHKRHLNQIHAQLVVSGLVESGFLV-TKFVNASWNIGEIGYARKVFDEFPEPS 133

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
           V  +N +IR Y ++  + DA+ +Y  M   G +PD +T PCVLKACSG   L VG ++H 
Sbjct: 134 VFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHG 193

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            + ++G + ++F  NGLVA+Y KCG +++AR V   +  +++V+W SM++GY QNG   E
Sbjct: 194 QIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPME 253

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTS--------------------PENVLSVKE 254
           AL +  +M    +KPD   + S+L + T+                      P+ ++S+  
Sbjct: 254 ALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTA 313

Query: 255 MFLK-------------LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAIS 301
           M+ K             ++  N++ WN MI+ YA N    EAV L+ +M    I  ++I+
Sbjct: 314 MYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSIT 373

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           V S + AC  + +L L + +  Y+ + + + ++ +  AL+DM+AKCGS+  AR VFD+  
Sbjct: 374 VRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTL 433

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            +DVV W++MI  YG+ G+G DA+ LF  M  +G+CP+ + FV +L+AC+H+GL+EEG  
Sbjct: 434 DKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWE 493

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
            F  M + Y +  R +H+AC+VDLLGR+G + EAYD I  MP+EP   +WG+L+ AC +Y
Sbjct: 494 LFHSM-KYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIY 552

Query: 482 SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS- 540
            ++ +G  AA+ +F L P  +G+YV LSN+YA +  W  V +VR  M  KG+ K  G S 
Sbjct: 553 RHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSL 612

Query: 541 VEMNDQVQ 548
           +E+N ++Q
Sbjct: 613 IEINGKLQ 620


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/555 (38%), Positives = 308/555 (55%), Gaps = 62/555 (11%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           PD K L   HA +I  Q    + S+G KL+  Y   G +V+ R VFDE+  KNVV +  +
Sbjct: 81  PDAKLL---HAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAM 137

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           I +Y  +    +AL  +  M   G  P+ +T+  +L AC+    L V  + H  +VK G 
Sbjct: 138 IAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACT---DLEVLGEFHDEIVKGGF 194

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL----- 216
           + N+F GNGLV MY K GC++ AR + + MP +DVV+WN+M+AGY QNG  ++AL     
Sbjct: 195 ESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQE 254

Query: 217 --------------------DVCREMESLRIKPDADTMA--------------------- 235
                               DV   +E     P+ + ++                     
Sbjct: 255 IPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLF 314

Query: 236 SLLPSVTNTSPENVLS-------VKE---MFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285
            ++P     S   V+S       V+E   +F  +   N+VSWN MIA Y+ N     A+ 
Sbjct: 315 QIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALK 374

Query: 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
           L+ QM++  ++PN  + A VLPAC  L+ L  G + H  V R   Q ++ + N LV MYA
Sbjct: 375 LFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYA 434

Query: 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
           KCGS+ +AR VFD+MR QD  S ++MI  Y ++G   +++ LF +M  +GL PD + FV 
Sbjct: 435 KCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVG 494

Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME 465
           VLSAC HAGL++EGR YF IMT  Y + P +EH+ C++DLLGRAG  +EA DLI +MP++
Sbjct: 495 VLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIK 554

Query: 466 PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVR 525
           P+  +WGSL++AC  ++N+D+G   A H+  L P     YVLLSNIYA AGRW D+  VR
Sbjct: 555 PDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVR 614

Query: 526 KFMNSKGIKKMPGAS 540
             M  + +KK  G S
Sbjct: 615 NRMKDRKVKKKLGCS 629



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 202/423 (47%), Gaps = 69/423 (16%)

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           L++S        +ALH+ ++M  +G  P   TY  +L+ C  + SL     +H  +++  
Sbjct: 35  LVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQ 94

Query: 161 LD-YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
            +  ++  GN LV++Y K G L EARRV ++MP K+VV+W +M+A YA++    EAL   
Sbjct: 95  FECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFF 154

Query: 220 REMESLRIKPDADTMASLLPSVTNTS--------------PENVLS-------------- 251
            EM+ + I+P+  T AS+LP+ T+                  NV                
Sbjct: 155 YEMQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCI 214

Query: 252 --VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
              +E+F K+  +++VSWN MIA Y  N +  +A+ L+ ++    +      +A     C
Sbjct: 215 EFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAG-YAQC 273

Query: 310 GDL-SALLLGRK------------IHRYVERKKLQPNLRL-----------ENALVDMYA 345
           GD+ +A+ L  K            I  YV+   ++   +L            NA++  +A
Sbjct: 274 GDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFA 333

Query: 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
           + G + EA  +F  M   +VVSW +MI+ Y  +GQ  +A+ LF +M M  + P++  F  
Sbjct: 334 QNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAI 393

Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA------CLVDLLGRAGKVEEAYDLI 459
           VL AC+   +LE+G        E +++V R    +       LV +  + G +E+A  + 
Sbjct: 394 VLPACAALAVLEQG-------NEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVF 446

Query: 460 KQM 462
            +M
Sbjct: 447 DRM 449



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 176/372 (47%), Gaps = 41/372 (11%)

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDV----VTWNSMVAGYAQNGRFDEALDVCREMES 224
           +GLV    K G L+EA  +L DM    +     T++S++ G        +A  +   M  
Sbjct: 33  DGLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQ 92

Query: 225 LRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAV 284
            + +    ++ + L S+      +++  + +F ++  KN+VSW  MIA YA +    EA+
Sbjct: 93  TQFECQDISLGNKLVSIY-VKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEAL 151

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMY 344
             + +M+  GI+PN  + AS+LPAC DL  L    + H  + +   + N+ + N LVDMY
Sbjct: 152 GFFYEMQDVGIQPNHFTFASILPACTDLEVL---GEFHDEIVKGGFESNVFVGNGLVDMY 208

Query: 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404
           AK G +  AR +FD+M  +DVVSW +MI+ Y  +G   DA+ LF ++       D I + 
Sbjct: 209 AKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKR----DVITWN 264

Query: 405 SVLSACSHAGLLEEGRYYFKIMTEQ------------------------YKLVPR--IEH 438
           ++++  +  G +E     F+ M EQ                        ++++P   +  
Sbjct: 265 TMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVIS 324

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD--IGILAADHIFH 496
           +  ++    + G+VEEA  L K MP E N   W +++A        +  + +     +  
Sbjct: 325 WNAVISGFAQNGQVEEALKLFKTMP-ECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVD 383

Query: 497 LAPNQSGYYVLL 508
           + PN   + ++L
Sbjct: 384 MKPNTETFAIVL 395


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/592 (36%), Positives = 322/592 (54%), Gaps = 71/592 (11%)

Query: 26  YTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGAC---GQMVD 82
           Y LL       +L      + LK++H+QII    LH N    L  +  + A    G +  
Sbjct: 27  YKLLQNHPSLTLLSTCKSFQNLKQIHSQII-KTGLH-NTQFALSKLIEFCAISPFGNLSY 84

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
              +F+ I   N   +N +IR    +     A+  Y  M + G +P+ YT+P +LK+C+ 
Sbjct: 85  ALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAK 144

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG----------------------- 179
             +   G QIH  V+K+GL+ + F    L+ MY + G                       
Sbjct: 145 VGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTAL 204

Query: 180 --------CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA 231
                   CL +ARR+  ++P +D V+WN+M+AGYAQ+GRF+EAL   +EM+   + P+ 
Sbjct: 205 ITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNE 264

Query: 232 DTMASLLPSV----------------------TNTSPENVL-----------SVKEMFLK 258
            TM ++L +                       +N    N L             +++F  
Sbjct: 265 STMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEG 324

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +  K+++SWNVMI  Y++ +   EA+ L+ +M+   +EPN ++  S+LPAC  L AL LG
Sbjct: 325 ICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLG 384

Query: 319 RKIHRYVERKKLQ-PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           + IH Y+++K L   N  L  +L+DMYAKCG++  A+ VF  M+ + + SW +MIS   M
Sbjct: 385 KWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAM 444

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
            G    A+ LF +M   G  PD I FV VLSACSHAGL+E GR  F  M E Y + P+++
Sbjct: 445 HGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQ 504

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHL 497
           H+ C++DLLGRAG  +EA  L+K M M+P+  IWGSL+ AC ++ N+++G  AA H+F L
Sbjct: 505 HYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFEL 564

Query: 498 APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
            P   G YVLLSNIYA AGRW DV R+R  +N KG+KK+PG +S+E++  V 
Sbjct: 565 EPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVH 616


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/543 (36%), Positives = 308/543 (56%), Gaps = 35/543 (6%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           K  D+   K++H   II   +  N  +   L+  Y  CG++ + R VFD +  K+   +N
Sbjct: 40  KQKDLMAAKQVH-DCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWN 98

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            +I  YV +    DA+ +++ M   G  P+  TY  +LKAC+  ++L  G ++H  +   
Sbjct: 99  AMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHG 158

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           GL+ ++  G  L+ MYGKCG + EARR+ +++ + D+++W  M+  YAQ+G   EA  + 
Sbjct: 159 GLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLM 218

Query: 220 REMESLRIKPDADTMASLLPSVTN---------------------------------TSP 246
            +ME    KP+A T  S+L +  +                                    
Sbjct: 219 LQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKS 278

Query: 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
            ++   + +F ++  +++VSWNVMI  +A +    EA DL+LQM+  G +P+AI   S+L
Sbjct: 279 GSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSIL 338

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
            AC    AL   +KIHR+     L+ ++R+  ALV MY+K GS+ +AR VFD+M+ ++VV
Sbjct: 339 NACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVV 398

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           SW +MIS     G G DA+ +F +M   G+ PD + FV+VLSACSHAGL++EGR  +  M
Sbjct: 399 SWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAM 458

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
           T+ Y + P + H  C+VDLLGRAG++ EA   I  M ++P+E  WG+L+ +C  Y N+++
Sbjct: 459 TQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVEL 518

Query: 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMND 545
           G L A     L P  +  YVLLSNIYA+AG+W  V  VR  M  +GI+K PG S +E+++
Sbjct: 519 GELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDN 578

Query: 546 QVQ 548
           ++ 
Sbjct: 579 KIH 581



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/398 (30%), Positives = 204/398 (51%), Gaps = 35/398 (8%)

Query: 113 DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV 172
           +A+ V  N    G   D + Y  VLK C     L+   Q+H  ++K  ++ N    N L+
Sbjct: 11  EAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLL 70

Query: 173 AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
            +Y +CG L+EAR V + +  K   +WN+M+AGY ++   ++A+ + REM    ++P+A 
Sbjct: 71  HVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAG 130

Query: 233 TMASLLPSVTNTSP---------------------------------ENVLSVKEMFLKL 259
           T   +L +  + S                                   ++   + +F  L
Sbjct: 131 TYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNL 190

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
            N +++SW VMI  YA +    EA  L LQME  G +PNAI+  S+L AC    AL   +
Sbjct: 191 MNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVK 250

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
           ++HR+     L+ ++R+  ALV MYAK GS+ +AR VFD+M+ +DVVSW  MI A+   G
Sbjct: 251 RVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHG 310

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
           +G++A  LF +M   G  PD+I F+S+L+AC+ AG LE  +   +   +   L   +   
Sbjct: 311 RGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDS-GLEVDVRVG 369

Query: 440 ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             LV +  ++G +++A  +  +M +  N   W ++++ 
Sbjct: 370 TALVHMYSKSGSIDDARVVFDRMKVR-NVVSWNAMISG 406



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 116/260 (44%), Gaps = 13/260 (5%)

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
           +EA+ + +     G+  ++     VL  C     L+  +++H  + + +++ N  + N L
Sbjct: 10  SEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNL 69

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           + +Y +CG L EAR VFD +  +   SW +MI+ Y       DA+ LF +M   G+ P++
Sbjct: 70  LHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNA 129

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
             ++ +L AC+    L+ G+     +     L   +     L+ + G+ G + EA  +  
Sbjct: 130 GTYMIILKACASLSALKWGKEVHACI-RHGGLESDVRVGTALLRMYGKCGSINEARRIFD 188

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY------YVLLSNIYAK 514
            + M  +   W  ++ A   Y+    G  A  +   L   Q G+      YV + N  A 
Sbjct: 189 NL-MNHDIISWTVMIGA---YAQSGNGKEA--YRLMLQMEQEGFKPNAITYVSILNACAS 242

Query: 515 AGRWGDVKRVRKFMNSKGIK 534
            G    VKRV +     G++
Sbjct: 243 EGALKWVKRVHRHALDAGLE 262


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/521 (38%), Positives = 314/521 (60%), Gaps = 10/521 (1%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N + D        K LHA +++   + S   I  +L+  Y   G +  +R  FD+I  K+
Sbjct: 23  NFLFDSSTKTPFAKCLHALLVVAGKVQS-IFISTRLVNLYANLGDVSLSRCTFDQIPQKD 81

Query: 95  VVFFNVLIRSYVNNYLYYDALH-VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           V  +N +I +YV+N  +++A+   Y+ + V    PD YT+P VLKAC    +L+ G +IH
Sbjct: 82  VYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRKIH 138

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
           C   K+G  +N+F    L+ MY + G    AR + +DMP +D+ +WN+M++G  QNG   
Sbjct: 139 CWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAA 198

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL--SVKEMFLKLDNKNLVSWNVMI 271
           +ALDV  EM    IK +  T+ S+LP   +   +  L  S  ++F  +  K+++SWN +I
Sbjct: 199 QALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLI 258

Query: 272 AVYANNSMPAEAVDLYLQME-VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
             YA N + +EA+++Y  ME    I PN  +  S+LPA   + AL  G KIH  V +  L
Sbjct: 259 TGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNL 318

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
             ++ +   L+D+Y KCG L +A ++F Q+  +  V+W ++IS +G+ G     + LF +
Sbjct: 319 HLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGE 378

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450
           ML  G+ PD + FVS+LSACSH+G +EEG++ F++M E Y + P ++H+ C+VDLLGRAG
Sbjct: 379 MLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAG 437

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSN 510
            +E AYD IK MP++P+  IWG+L+ AC ++ N+++G  A+D +F +     GYYVLLSN
Sbjct: 438 YLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSN 497

Query: 511 IYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQII 550
           IYA  G+W  V +VR     +G+KK PG +++E+N +V + 
Sbjct: 498 IYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVF 538


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/524 (37%), Positives = 303/524 (57%), Gaps = 50/524 (9%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH---VFDEITNK 93
           IL   P+I  LKK+HA I+      S       + +    C    +T +   +F  + + 
Sbjct: 20  ILKNCPNIVELKKIHAHIV----KFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADP 75

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD-----PDCYTYPCVLKACSGSNSLLV 148
           N   +N +IR+Y +N +Y  A+ VYK M  H        PD +T+P V+K+C+G     +
Sbjct: 76  NAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDL 135

Query: 149 GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
           G Q+H  V K G   N    N LV MY KC  L +A +V  +M  +D V+WN++++G+ +
Sbjct: 136 GKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVR 195

Query: 209 NGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWN 268
            G+   A  +  EM+                                     +K + SW 
Sbjct: 196 LGQMRRARAIFEEMQ-------------------------------------DKTIFSWT 218

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
            +++ YA     A+A++ + +M++ GIEP+ IS+ SVLPAC  L AL LG+ IH Y ++ 
Sbjct: 219 AIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKA 278

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
               N+ + NAL++MYAKCGS+ E R +FDQM  +DV+SW++MI      G+ ++A+ LF
Sbjct: 279 GFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELF 338

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
            +M  + + P+ I FV +LSAC+HAGLL EG  YF+ M   Y + P +EH+ CLV+LLG 
Sbjct: 339 QEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGL 398

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508
           +G++++A +LIK+MPM+P+  IWGSL+++C  +SN++I ++A +H+  L P  +G YVLL
Sbjct: 399 SGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLL 458

Query: 509 SNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQIIA 551
           SN+YA  G+W  V R+RK M SK +KK PG +S+E+++ VQ  A
Sbjct: 459 SNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFA 502


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/509 (38%), Positives = 296/509 (58%), Gaps = 40/509 (7%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           P I  LKK+HA I+      SN  +  K++        +     +F ++ N NV  +N +
Sbjct: 18  PKIAELKKIHAHIVKLSLSQSNFLV-TKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAI 76

Query: 102 IRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           IR+Y +N+ +  A+ V+  M +     PD +T+P V+K+C+G     +G Q+H  V K G
Sbjct: 77  IRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFG 136

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
              +    N L+ MY KCG +  A +V  +M  +D V+WNS+++G+ + G+         
Sbjct: 137 PKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMK------- 189

Query: 221 EMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                                         S +E+F ++  + +VSW  MI  YA     
Sbjct: 190 ------------------------------SAREVFDEMPCRTIVSWTTMINGYARGGCY 219

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
           A+A+ ++ +M+V GIEP+ ISV SVLPAC  L AL +G+ IH+Y E+     N  + NAL
Sbjct: 220 ADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNAL 279

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           V+MYAKCG + EA  +F+QM  +DV+SW++MI      G+GY A+ +F  M  +G+ P+ 
Sbjct: 280 VEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNG 339

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           + FV VLSAC+HAGL  EG  YF +M   Y L P+IEH+ CLVDLLGR+G+VE+A D I 
Sbjct: 340 VTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTIL 399

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD 520
           +MPM+P+ R W SL+++C ++ N++I ++A + +  L P +SG YVLL+NIYAK  +W  
Sbjct: 400 KMPMQPDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEG 459

Query: 521 VKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           V  VRK + SK IKK PG S +E+N+ VQ
Sbjct: 460 VSNVRKLIRSKRIKKTPGCSLIEVNNLVQ 488



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 141/307 (45%), Gaps = 11/307 (3%)

Query: 6   LLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPS 65
           LLCR               +   ++ +A  D+  K  D+    +++ ++     +  N  
Sbjct: 119 LLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWN-- 176

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
               L+  +   GQM   R VFDE+  + +V +  +I  Y     Y DAL +++ M V G
Sbjct: 177 ---SLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVG 233

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            +PD  +   VL AC+   +L VG  IH    K G   N    N LV MY KCGC+ EA 
Sbjct: 234 IEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAW 293

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            + N M  KDV++W++M+ G A +G+   A+ V  +M+   + P+  T   +L +  +  
Sbjct: 294 GLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAG 353

Query: 246 PENVLSVKEMFLKLD---NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
             N        +++D      +  +  ++ +   +    +A+D  L+M    ++P++ + 
Sbjct: 354 LWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMP---MQPDSRTW 410

Query: 303 ASVLPAC 309
            S+L +C
Sbjct: 411 NSLLSSC 417


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/561 (34%), Positives = 317/561 (56%), Gaps = 36/561 (6%)

Query: 16  PVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG 75
           P +     T  +L   +    IL++   I+ L ++HA +I    L   P +   L+ +  
Sbjct: 9   PAKTPTAKTSISLFPENPKTLILEQCKTIRDLNEIHAHLI-KTRLLLKPKVAENLLESAA 67

Query: 76  AC--GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
                 M     +F +I   +   +N++IR +      ++A+ ++K M  +   PD +T+
Sbjct: 68  ILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTF 127

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
           PC+LK CS   +L  G QIH  ++K G   + F  N L+ MY  CG ++ ARRV ++M  
Sbjct: 128 PCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSE 187

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL--------------- 238
           ++V TWNSM AGY ++G ++E + +  EM  L I+ D  T+ S+L               
Sbjct: 188 RNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWI 247

Query: 239 ------------PSVTNTSPE------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                       P++  +  +       V + + +F ++D +++V+W+ MI+ Y+  S  
Sbjct: 248 NRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRC 307

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            EA+DL+ +M+   I+PN I++ S+L +C  L AL  G+ +H ++++K+++  + L  AL
Sbjct: 308 REALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTAL 367

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +D YAKCGS+  +  VF +M  ++V+SWT +I     +GQG  A+  F  ML   + P+ 
Sbjct: 368 MDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPND 427

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           + F+ VLSACSHAGL++EGR  F  M+  + + PRIEH+ C+VD+LGRAG +EEA+  IK
Sbjct: 428 VTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIK 487

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD 520
            MP++PN  IW +L+A+C ++ N++IG  +   +  L P  SG Y+LLSNIYA  GRW D
Sbjct: 488 NMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWED 547

Query: 521 VKRVRKFMNSKGIKKMPGASV 541
             +VR  M  KGIKK PG S+
Sbjct: 548 ALKVRGEMKEKGIKKTPGCSL 568


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/517 (37%), Positives = 307/517 (59%), Gaps = 36/517 (6%)

Query: 68  LKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD 127
            K MR  G   ++   R +FDE+ +++V+ +N +I  YV+N L    L +++ M + G +
Sbjct: 190 FKRMRELGI-RRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGIN 248

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
            D  T   V+  CS +  LL+G  +H   +K      L   N L+ MY K G L  A +V
Sbjct: 249 TDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQV 308

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS------- 240
              M  + VV+W SM+AGYA+ G  D ++ +  EME   I PD  T+ ++L +       
Sbjct: 309 FETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLL 368

Query: 241 -----VTNTSPENVLS---------------------VKEMFLKLDNKNLVSWNVMIAVY 274
                V N   EN +                         +F ++  K++VSWN MI  Y
Sbjct: 369 ENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGY 428

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           + NS+P EA++L+++M+ +  +PN+I++A +LPAC  L+AL  G++IH ++ R     + 
Sbjct: 429 SKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDR 487

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + NALVDMY KCG+L  AR +FD +  +D+VSWT MI+ YGM G G +A+A F++M  S
Sbjct: 488 HVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNS 547

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           G+ PD ++F+S+L ACSH+GLL+EG  +F +M     + P+ EH+AC+VDLL RAG + +
Sbjct: 548 GIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSK 607

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           AY  IK MP+EP+  IWG+L+  C +Y ++ +    A+H+F L P  +GYYVLL+NIYA+
Sbjct: 608 AYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAE 667

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           A +W +VK++R+ +  +G++K PG S +E+  +V I 
Sbjct: 668 AEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIF 704



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 179/339 (52%), Gaps = 20/339 (5%)

Query: 127 DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR 186
           D +  TY  VL+ C+   S+  G +IH  +    ++ +   G+ LV MY  CG L+E RR
Sbjct: 98  DLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRR 157

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP 246
           + + + ++ V  WN ++ GYA+ G F E+L + + M  L I+                  
Sbjct: 158 IFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIR------------------ 199

Query: 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
             V S +++F +L +++++SWN MI+ Y +N +  + +DL+ QM + GI  +  ++ SV+
Sbjct: 200 -RVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVV 258

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
             C +   LLLGR +H Y  +      L L N L+DMY+K G+L  A  VF+ M  + VV
Sbjct: 259 AGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVV 318

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           SWTSMI+ Y   G    +V LF +M   G+ PD     ++L AC+  GLLE G+     +
Sbjct: 319 SWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYI 378

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME 465
            E  K+   +     L+D+  + G + +A+ +  +M ++
Sbjct: 379 KEN-KMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVK 416



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 8/221 (3%)

Query: 24  TQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT 83
           T  T+L   AC  +L+   D+      H  I  N+ + S+  +   LM  Y  CG M D 
Sbjct: 354 TITTILHACACTGLLENGKDV------HNYIKENK-MQSDLFVSNALMDMYAKCGSMGDA 406

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
             VF E+  K++V +N +I  Y  N L  +AL+++  M  +   P+  T  C+L AC+  
Sbjct: 407 HSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASL 465

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
            +L  G +IH  +++ G   +    N LV MY KCG L  AR + + +P KD+V+W  M+
Sbjct: 466 AALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMI 525

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           AGY  +G   EA+    EM +  I+PD  +  S+L + +++
Sbjct: 526 AGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHS 566


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/578 (36%), Positives = 312/578 (53%), Gaps = 70/578 (12%)

Query: 26  YTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGAC---GQMVD 82
           Y LL       +L      + LK++H+QII    LH N    L  +  + A    G +  
Sbjct: 27  YKLLQNHPSLTLLSTCKSFQNLKQIHSQII-KTGLH-NTQFALSKLIEFCAISPFGNLSY 84

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
              +F+ I   N   +N +IR    +     A+  Y  M + G +P+ YT+P +LK+C+ 
Sbjct: 85  ALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAK 144

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG----------------------- 179
             +   G QIH  V+K+GL+ + F    L+ MY + G                       
Sbjct: 145 VGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTAL 204

Query: 180 --------CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA 231
                   CL +ARR+  ++P +D V+WN+M+AGYAQ+GRF+EAL   +EM+   + P+ 
Sbjct: 205 ITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNE 264

Query: 232 DTMASLLPSV----------------------TNTSPENVL-----------SVKEMFLK 258
            TM ++L +                       +N    N L             +++F  
Sbjct: 265 STMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEG 324

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +  K+++SWNVMI  Y++ +   EA+ L+ +M+   +EPN ++  S+LPAC  L AL LG
Sbjct: 325 ICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLG 384

Query: 319 RKIHRYVERKKLQ-PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           + IH Y+++K L   N  L  +L+DMYAKCG++  A+ VF  M+ + + SW +MIS   M
Sbjct: 385 KWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAM 444

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
            G    A+ LF +M   G  PD I FV VLSACSHAGL+E GR  F  M E Y + P+++
Sbjct: 445 HGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQ 504

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHL 497
           H+ C++DLLGRAG  +EA  L+K M M+P+  IWGSL+ AC ++ N+++G  AA H+F L
Sbjct: 505 HYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFEL 564

Query: 498 APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK 535
            P   G YVLLSNIYA AGRW DV R+R  +N KG+KK
Sbjct: 565 EPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 602


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/616 (34%), Positives = 324/616 (52%), Gaps = 73/616 (11%)

Query: 4   VVLLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSN 63
           +V+L    ST + +     S  Y L+       +L     ++TLK++H+QII    LH N
Sbjct: 1   MVVLASPVSTLQVLSFSDPSPPYKLVHDHPSLTLLSNCKTLQTLKQIHSQII-KTGLH-N 58

Query: 64  PSIGLKLMRTYGACGQMVDTRH---VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKN 120
               L  +  + A     D  +   +F  I N N V +N +IR   ++   + AL  Y +
Sbjct: 59  THFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVH 118

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG- 179
           M   G +P+ YT+P + K+C+       G Q+H  V+K+GL++N F    L+ MY + G 
Sbjct: 119 MISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGE 178

Query: 180 ------------------------------CLKEARRVLNDMPSKDVVTWNSMVAGYAQN 209
                                          L EAR + +++P +DVV+WN+M++GYAQ+
Sbjct: 179 LVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQS 238

Query: 210 GRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE---------------------- 247
           GR +EA+    EM   ++ P+  TM S+L +   +                         
Sbjct: 239 GRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRL 298

Query: 248 ------------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
                       ++     +F K+ +KN+VSWNVMI  Y + S   EA+ L+ +M    I
Sbjct: 299 VNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNI 358

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVER--KKLQPNLRLENALVDMYAKCGSLTEA 353
           +PN ++  S+LPAC +L AL LG+ +H YV++  K ++  + L  +L+DMYAKCG L  A
Sbjct: 359 DPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVA 418

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
           + +FD M  + + +W +MIS + M G    A+ LFS+M   G  PD I FV VL+AC HA
Sbjct: 419 KRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHA 478

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           GLL  GR YF  M + YK+ P++ H+ C++DL GRAG  +EA  L+K M M+P+  IW S
Sbjct: 479 GLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCS 538

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           L+ AC ++  +++    A H+F L P     YVLLSNIYA AGRW DV ++R  +N   +
Sbjct: 539 LLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRM 598

Query: 534 KKMPG-ASVEMNDQVQ 548
           KK+PG +S+E++  V 
Sbjct: 599 KKVPGCSSIEVDSVVH 614


>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
 gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
 gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
 gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
          Length = 534

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/506 (37%), Positives = 304/506 (60%), Gaps = 46/506 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH---VFDEITNKNVVFFNVLIRS 104
           KK++A III  H  S  S  +  M  +  C ++ D  +   +F++++N NV  +N +IR+
Sbjct: 27  KKINASIII--HGLSQSSFMVTKMVDF--CDKIEDMDYATRLFNQVSNPNVFLYNSIIRA 82

Query: 105 YVNNYLYYDALHVYKNMSVHGFD-PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           Y +N LY D + +YK +    F+ PD +T+P + K+C+   S  +G Q+H  + K G  +
Sbjct: 83  YTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRF 142

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           ++   N L+ MY K   L +A +V ++M  +DV++WNS+++GYA+ G+  +A        
Sbjct: 143 HVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKA-------- 194

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
                                        K +F  + +K +VSW  MI+ Y       EA
Sbjct: 195 -----------------------------KGLFHLMLDKTIVSWTAMISGYTGIGCYVEA 225

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
           +D + +M++ GIEP+ IS+ SVLP+C  L +L LG+ IH Y ER+       + NAL++M
Sbjct: 226 MDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEM 285

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
           Y+KCG +++A  +F QM  +DV+SW++MIS Y   G  + A+  F++M  + + P+ I F
Sbjct: 286 YSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITF 345

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           + +LSACSH G+ +EG  YF +M + Y++ P+IEH+ CL+D+L RAGK+E A ++ K MP
Sbjct: 346 LGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMP 405

Query: 464 MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKR 523
           M+P+ +IWGSL+++C    N+D+ ++A DH+  L P   G YVLL+NIYA  G+W DV R
Sbjct: 406 MKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSR 465

Query: 524 VRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           +RK + ++ +KK PG S +E+N+ VQ
Sbjct: 466 LRKMIRNENMKKTPGGSLIEVNNIVQ 491



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 110/219 (50%), Gaps = 5/219 (2%)

Query: 25  QYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR 84
           ++ +++ +A  D+  K+ D+    K+  ++     +  N      L+  Y   GQM   +
Sbjct: 141 RFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWN-----SLLSGYARLGQMKKAK 195

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
            +F  + +K +V +  +I  Y     Y +A+  ++ M + G +PD  +   VL +C+   
Sbjct: 196 GLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLG 255

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
           SL +G  IH    + G        N L+ MY KCG + +A ++   M  KDV++W++M++
Sbjct: 256 SLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMIS 315

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           GYA +G    A++   EM+  ++KP+  T   LL + ++
Sbjct: 316 GYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSH 354


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/562 (35%), Positives = 322/562 (57%), Gaps = 39/562 (6%)

Query: 21  VLSTQYTLLSG-DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQ 79
           V S  YT +S   AC    +    IK  + +HA I+ + H  ++  +   L+  Y  CGQ
Sbjct: 247 VESNTYTFVSALQAC----EGPTFIKIGRGIHAVILKSNHF-TDVYVSNALIAMYANCGQ 301

Query: 80  MVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA 139
           M D   VF  +  K+ V +N L+   V N +Y DA++ +++M   G  PD  +   ++ A
Sbjct: 302 MEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAA 361

Query: 140 CSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTW 199
              S +LL G+++H   +K G+D N+  GN L+ MYGKC C+K        MP KD+++W
Sbjct: 362 SGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISW 421

Query: 200 NSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS-------- 251
            +++AGYAQN    +AL++ R+++  ++  D   + S+L + +    E ++         
Sbjct: 422 TTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLK 481

Query: 252 ------------------------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
                                    + +F  +++K++VSW  MI    +N +  EA++L+
Sbjct: 482 GGLADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELF 541

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
             +    IEP+ I++ SVL A   LS+L  G++IH ++ RK       + N+LVDMYA+C
Sbjct: 542 NSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARC 601

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           G++  AR +F+ ++ +D++ WTSMI+A GM G G DA+ LFSKM    + PD I F+++L
Sbjct: 602 GTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALL 661

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
            ACSH+GL+ EG+ +F+IM  +YKL P  EH+ACLVDLL R+  +EEAY  ++ MP+EP+
Sbjct: 662 YACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPS 721

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527
             +W +L+ AC ++SN D+G +AA  +  L    SG YVL+SN +A  GRW DV+ VR  
Sbjct: 722 AEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSI 781

Query: 528 MNSKGIKKMPGAS-VEMNDQVQ 548
           M    +KK PG S +E+ +++ 
Sbjct: 782 MKGNKLKKKPGCSWIEVENKIH 803



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 199/399 (49%), Gaps = 35/399 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LHA  +  Q+   +  +  K +  YG CG   D   VFD+++ + +  +N +I + V+
Sbjct: 66  QQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVS 125

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
              Y +A+ +YK M V G   D +T+PCVLKAC       +G +IH   VK G    +F 
Sbjct: 126 AGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFV 185

Query: 168 GNGLVAMYGKCGCLKEARRVLND--MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
            N L+AMY KCG L  AR + +   M   D V+WNS+++ +   G   EAL + R M+ +
Sbjct: 186 CNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEV 245

Query: 226 RIKPDADTMASLLPS----------------------VTNTSPENVL-----------SV 252
            ++ +  T  S L +                       T+    N L             
Sbjct: 246 GVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDA 305

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           + +F  +  K+ VSWN +++    N M ++A++ +  M+  G +P+ +SV +++ A G  
Sbjct: 306 ERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRS 365

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
           + LL G ++H Y  +  +  N+ + N+L+DMY KC  +    + F+ M  +D++SWT++I
Sbjct: 366 ANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTII 425

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
           + Y  +    DA+ L  K+ +  +  D +   S+L ACS
Sbjct: 426 AGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACS 464



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 175/386 (45%), Gaps = 48/386 (12%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVG--LDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
           Y   L+ C+   +L  G Q+H   +K    LD ++F     V MYGKCG   +A +V + 
Sbjct: 49  YSQALELCASHKALPQGQQLHAHFLKTQNYLD-SVFLDTKFVHMYGKCGSFYDAVKVFDK 107

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV- 249
           M  + + TWN+M+      GR+ EA+++ +EM  L +  DA T   +L +        + 
Sbjct: 108 MSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLG 167

Query: 250 -----LSVK--------------EMFLK---------------LDNKNLVSWNVMIAVYA 275
                ++VK               M+ K               ++  + VSWN +I+ + 
Sbjct: 168 CEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHV 227

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
                 EA+ L+ +M+  G+E N  +  S L AC   + + +GR IH  + +     ++ 
Sbjct: 228 GEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVY 287

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           + NAL+ MYA CG + +A  VF  M  +D VSW +++S    +    DA+  F  M  SG
Sbjct: 288 VSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSG 347

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE---HFA-CLVDLLGRAGK 451
             PD ++ +++++A   +  L  G     +    Y +   I+   H    L+D+ G+   
Sbjct: 348 QKPDQVSVLNMIAASGRSANLLAG-----MEVHAYAIKHGIDSNMHIGNSLIDMYGKCCC 402

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAA 477
           V+      + MP E +   W +++A 
Sbjct: 403 VKYMGSAFEYMP-EKDLISWTTIIAG 427



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 133/276 (48%), Gaps = 26/276 (9%)

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           ++F K+  + + +WN MI    +     EA++LY +M V G+  +A +   VL ACG   
Sbjct: 103 KVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFK 162

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ--MRCQDVVSWTSM 371
              LG +IH    +      + + NAL+ MYAKCG L  AR +FD   M   D VSW S+
Sbjct: 163 ERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSI 222

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           ISA+   G+  +A++LF +M   G+  ++  FVS L AC       EG  + KI    + 
Sbjct: 223 ISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQAC-------EGPTFIKIGRGIHA 275

Query: 432 LVPRIEHFA------CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           ++ +  HF        L+ +    G++E+A  + K M       ++   V+   L S M 
Sbjct: 276 VILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSM-------LFKDCVSWNTLLSGMV 328

Query: 486 IGILAADHIFHLAPNQ-SGY---YVLLSNIYAKAGR 517
              + +D I H    Q SG     V + N+ A +GR
Sbjct: 329 QNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGR 364


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 190/547 (34%), Positives = 314/547 (57%), Gaps = 35/547 (6%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +K  K +H++I+   H  S+ ++G  L++ Y  CG   D R VF+++ N++++ +N +I 
Sbjct: 243 LKWGKAVHSRILNAGH-ESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIG 301

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
                  + +A  VY  M   G  P+  TY  +L AC  S +L  G +IH  V K G   
Sbjct: 302 GLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTS 361

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           ++   N L++MY +CG +K+AR V + M  KDV++W +M+ G A++G   EAL V +EM+
Sbjct: 362 DIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQ 421

Query: 224 SLRIKPDADTMASLLPS----------------------VTNTSPENVL----------- 250
              ++P+  T  S+L +                       T+    N L           
Sbjct: 422 QAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVK 481

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
             +++F ++  +++V++N MI  YA +++  EA+ L+ +++  G++P+ ++  ++L AC 
Sbjct: 482 DARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACA 541

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           +  +L   R+IH  V +     +  + NALV  YAKCGS ++A  VF++M  ++V+SW +
Sbjct: 542 NSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNA 601

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           +I      G+G DA+ LF +M M G+ PD + FVS+LSACSHAGLLEEGR YF  M++ +
Sbjct: 602 IIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDF 661

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            ++P IEH+ C+VDLLGRAG+++EA  LIK MP + N RIWG+L+ AC ++ N+ +   A
Sbjct: 662 AIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERA 721

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQI 549
           A+    L  + +  YV LS++YA AG W    ++RK M  +G+ K PG S +++ D++  
Sbjct: 722 AESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHY 781

Query: 550 IALPLRS 556
                RS
Sbjct: 782 FVAEDRS 788



 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 132/455 (29%), Positives = 233/455 (51%), Gaps = 37/455 (8%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT--NKNVVFFNV 100
           D+   +++H  II ++ +    ++   L+  Y  CG + + R V+ +++   + V  +N 
Sbjct: 38  DLVAGRQVHQHIIQHRTVPDQYTVN-ALINMYIQCGSIEEARQVWKKLSYMERTVHSWNA 96

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           ++  Y+       AL + + M  HG  PD  T    L +C    +L  G +IH   ++ G
Sbjct: 97  MVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAG 156

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
           L +++   N ++ MY KCG ++EAR V + M  K VV+W   + GYA  GR + A ++ +
Sbjct: 157 LLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQ 216

Query: 221 EMESLRIKPDADTMASLLPS----------------VTNTSPENVLSV------------ 252
           +ME   + P+  T  S+L +                + N   E+  +V            
Sbjct: 217 KMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCG 276

Query: 253 -----KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                +++F KL N++L++WN MI   A      EA ++Y QM+  G+ PN I+   +L 
Sbjct: 277 SYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLN 336

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           AC + +AL  G++IH  V +     ++ ++NAL+ MY++CGS+ +AR VFD+M  +DV+S
Sbjct: 337 ACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVIS 396

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           WT+MI     SG G +A+ ++ +M  +G+ P+ + + S+L+ACS    LE GR   + + 
Sbjct: 397 WTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVV 456

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           E   L         LV++    G V++A  +  +M
Sbjct: 457 EA-GLATDAHVGNTLVNMYSMCGSVKDARQVFDRM 490



 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 120/384 (31%), Positives = 205/384 (53%), Gaps = 33/384 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y  CG + + R VFD++  K+VV + + I  Y +      A  +++ M   G  P+
Sbjct: 167 ILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPN 226

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             TY  VL A S   +L  G  +H  ++  G + +   G  LV MY KCG  K+ R+V  
Sbjct: 227 RITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFE 286

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP--- 246
            + ++D++ WN+M+ G A+ G ++EA +V  +M+   + P+  T   LL +  N++    
Sbjct: 287 KLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHW 346

Query: 247 -------------------ENVL--------SVKE---MFLKLDNKNLVSWNVMIAVYAN 276
                              +N L        S+K+   +F K+  K+++SW  MI   A 
Sbjct: 347 GKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAK 406

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           +   AEA+ +Y +M+  G+EPN ++  S+L AC   +AL  GR+IH+ V    L  +  +
Sbjct: 407 SGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHV 466

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            N LV+MY+ CGS+ +AR VFD+M  +D+V++ +MI  Y     G +A+ LF ++   GL
Sbjct: 467 GNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGL 526

Query: 397 CPDSIAFVSVLSACSHAGLLEEGR 420
            PD + ++++L+AC+++G LE  R
Sbjct: 527 KPDKVTYINMLNACANSGSLEWAR 550



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 168/342 (49%), Gaps = 35/342 (10%)

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           A+ V + +   G   +   Y  +LK C     L+ G Q+H  +++     + +  N L+ 
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 174 MYGKCGCLKEARRVLNDMP--SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA 231
           MY +CG ++EAR+V   +    + V +WN+MV GY Q G  ++AL + R+M+   + PD 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 232 DTMASLLPSVTNTSP---------------------------------ENVLSVKEMFLK 258
            T+ S L S  +                                     ++   +E+F K
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           ++ K++VSW + I  YA+      A +++ +ME  G+ PN I+  SVL A    +AL  G
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG 246

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           + +H  +     + +  +  ALV MYAKCGS  + R VF+++  +D+++W +MI      
Sbjct: 247 KAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 306

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           G   +A  ++++M   G+ P+ I +V +L+AC ++  L  G+
Sbjct: 307 GYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGK 348



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 123/249 (49%), Gaps = 9/249 (3%)

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           AVD+   ++  G + N+     +L  C ++  L+ GR++H+++ + +  P+    NAL++
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 343 MYAKCGSLTEARTVFDQMRCQD--VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           MY +CGS+ EAR V+ ++   +  V SW +M+  Y   G    A+ L  +M   GL PD 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 401 IAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
              +S LS+C   G LE GR  +F+ M  Q  L+  ++   C++++  + G +EEA ++ 
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAM--QAGLLFDVKVANCILNMYAKCGSIEEAREVF 184

Query: 460 KQMPMEPNERIWGSLVA--ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG- 516
            +M  + +   W   +   A C  S     I        + PN+  Y  +L+   + A  
Sbjct: 185 DKME-KKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAAL 243

Query: 517 RWGDVKRVR 525
           +WG     R
Sbjct: 244 KWGKAVHSR 252


>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 534

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 184/503 (36%), Positives = 301/503 (59%), Gaps = 40/503 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           KK+HA II++  L  +  +  K++      G M     +F++++N NV  +N +IR+Y +
Sbjct: 27  KKIHACIIVHG-LSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTH 85

Query: 108 NYLYYDALHVYKNMSVHGFD-PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
           N LY D + +YK +     + PD +T+P + K+C+   S  +G Q+H  + K G  +++ 
Sbjct: 86  NSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVV 145

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
             N L+ MY K   L +A +V ++M  +DV++WNS+++GYA+ G+  +A           
Sbjct: 146 TENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARLGQMKKA----------- 194

Query: 227 IKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
                                     K +F  + +K +VSW  MI+ Y       EA+D 
Sbjct: 195 --------------------------KGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDF 228

Query: 287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
           + +M++ GIEP+ IS+ SVLP+C  L +L LG+ IH Y ER+ L     + NAL++MY+K
Sbjct: 229 FREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSK 288

Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
           CG L++A  +F+Q + +DV+SW++MIS Y   G  + A   F +M  + + P+ I F+ +
Sbjct: 289 CGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGL 348

Query: 407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP 466
           LSACSH GL ++G  YF +M + Y++ P+IEH+ CL+D+L RAGK+E A ++ K MP++P
Sbjct: 349 LSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVKP 408

Query: 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526
           + +IWGSL+++C    N+D+ ++A DH+  + P+  G YVLL+NIYA  G+W DV R+RK
Sbjct: 409 DSKIWGSLLSSCRTKGNLDVALVAMDHLVEVEPDDMGNYVLLANIYADLGKWEDVSRLRK 468

Query: 527 FMNSKGIKKMPGAS-VEMNDQVQ 548
            +  + +KK PG S +E+N+ VQ
Sbjct: 469 IIRKENMKKTPGCSLIEVNNIVQ 491



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 109/219 (49%), Gaps = 5/219 (2%)

Query: 25  QYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR 84
           ++ +++ +A  D+  K+ D+    K+  ++     +  N      L+  Y   GQM   +
Sbjct: 141 RFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNS-----LLSGYARLGQMKKAK 195

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
            +F  + +K +V +  +I  Y     Y +A+  ++ M + G +PD  +   VL +C+   
Sbjct: 196 GLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLG 255

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
           SL +G  IH    + GL       N L+ MY KCG L +A ++      KDV++W++M++
Sbjct: 256 SLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMIS 315

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           GYA +G    A +   EM+  ++KP+  T   LL + ++
Sbjct: 316 GYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSH 354


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 189/547 (34%), Positives = 311/547 (56%), Gaps = 35/547 (6%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +K  K +H+ I+   H  S+ ++G  L++ Y  CG   D R VF+++ N++++ +N +I 
Sbjct: 361 LKWGKTVHSHILNAGH-ESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIG 419

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
                  + +A  +Y  M   G  P+  TY  +L AC    +L  G +IH  VVK G  +
Sbjct: 420 GLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMF 479

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           ++   N L++MY +CG +K+AR + N M  KD+++W +M+ G A++G   EAL V ++M+
Sbjct: 480 DISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQ 539

Query: 224 SLRIKPDADTMASLLPS----------------------VTNTSPENVL----------- 250
              +KP+  T  S+L +                       T+    N L           
Sbjct: 540 QAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVK 599

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
             +++F ++  +++V++N MI  YA +++  EA+ L+ +++  G++P+ ++  ++L AC 
Sbjct: 600 DARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACA 659

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           +  +L   ++IH  V +     +  L NALV  YAKCGS ++A  VFD+M  ++V+SW +
Sbjct: 660 NSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNA 719

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           +I      G+G D + LF +M M G+ PD + FVS+LSACSHAGLLEEGR YF  M+  +
Sbjct: 720 IIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDF 779

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            + P IEH+ C+VDLLGRAG+++E   LIK MP + N RIWG+L+ AC ++ N+ +   A
Sbjct: 780 GITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERA 839

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQI 549
           A+    L P+ +  YV LS++YA AG W    ++RK M  +G+ K PG S +E+ D++  
Sbjct: 840 AESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHY 899

Query: 550 IALPLRS 556
                RS
Sbjct: 900 FVAEDRS 906



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/448 (29%), Positives = 231/448 (51%), Gaps = 47/448 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y  CG + + R VFD++  K+VV + ++I  Y +      A  +++ M   G  P+
Sbjct: 285 ILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPN 344

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             TY  VL A SG  +L  G  +H  ++  G + +L  G  LV MY KCG  K+ R+V  
Sbjct: 345 RITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFE 404

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN------ 243
            + ++D++ WN+M+ G A+ G ++EA ++  +M+   + P+  T   LL +  N      
Sbjct: 405 KLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHW 464

Query: 244 ----------------TSPENVL--------SVKE---MFLKLDNKNLVSWNVMIAVYAN 276
                            S +N L        S+K+   +F K+  K+++SW  MI   A 
Sbjct: 465 GREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAK 524

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           + + AEA+ ++  M+  G++PN ++  S+L AC   +AL  GR+IH+ V    L  +  +
Sbjct: 525 SGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHV 584

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            N LV+MY+ CGS+ +AR VFD+M  +D+V++ +MI  Y     G +A+ LF ++   GL
Sbjct: 585 ANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGL 644

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA------CLVDLLGRAG 450
            PD + ++++L+AC+++G LE  +       E + LV +  + +       LV    + G
Sbjct: 645 KPDKVTYINMLNACANSGSLEWAK-------EIHSLVLKDGYLSDTSLGNALVSTYAKCG 697

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAAC 478
              +A  +  +M M+ N   W +++  C
Sbjct: 698 SFSDALLVFDKM-MKRNVISWNAIIGGC 724



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/428 (29%), Positives = 222/428 (51%), Gaps = 36/428 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEI--TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD 127
           L+  Y  CG + + R V++++  T + V  +N ++  YV      +AL + + M  HG  
Sbjct: 182 LINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLA 241

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
               T   +L +C   ++L  G +IH   +K  L +++   N ++ MY KCG + EAR V
Sbjct: 242 LGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREV 301

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS------- 240
            + M +K VV+W  ++ GYA  G  + A ++ ++M+   + P+  T  ++L +       
Sbjct: 302 FDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAAL 361

Query: 241 ---------VTNTSPENVLSV-----------------KEMFLKLDNKNLVSWNVMIAVY 274
                    + N   E+ L+V                 +++F KL N++L++WN MI   
Sbjct: 362 KWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGL 421

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           A      EA ++Y QM+  G+ PN I+   +L AC + +AL  GR+IH  V +     ++
Sbjct: 422 AEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDI 481

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            ++NAL+ MYA+CGS+ +AR +F++M  +D++SWT+MI     SG G +A+A+F  M  +
Sbjct: 482 SVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQA 541

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           GL P+ + + S+L+ACS    L+ GR   + + E   L         LV++    G V++
Sbjct: 542 GLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEA-GLATDAHVANTLVNMYSMCGSVKD 600

Query: 455 AYDLIKQM 462
           A  +  +M
Sbjct: 601 ARQVFDRM 608



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 219/489 (44%), Gaps = 69/489 (14%)

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           A+ V + +   G   +   Y  +LK C     L+ G ++H  +++     + +  N L+ 
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALIN 184

Query: 174 MYGKCGCLKEARRVLNDM--PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA 231
           MY +CG ++EAR+V N +    + V +WN+MV GY Q G  +EAL + REM+   +    
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGR 244

Query: 232 DTMASLLPSVTNTSP---------------------------------ENVLSVKEMFLK 258
            T   LL S  + S                                   ++   +E+F K
Sbjct: 245 ATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDK 304

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           ++ K++VSW ++I  YA+      A +++ +M+  G+ PN I+  +VL A    +AL  G
Sbjct: 305 METKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWG 364

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           + +H ++     + +L +  ALV MYAKCGS  + R VF+++  +D+++W +MI      
Sbjct: 365 KTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 424

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----------YYFKIMTE 428
           G   +A  ++ +M   G+ P+ I +V +L+AC +   L  GR          + F I  +
Sbjct: 425 GNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQ 484

Query: 429 QY-------------------KLVPR-IEHFACLVDLLGRAGKVEEA---YDLIKQMPME 465
                                K+V + I  +  ++  L ++G   EA   +  ++Q  ++
Sbjct: 485 NALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLK 544

Query: 466 PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV-LLSNIYAKAGRWGDVKRV 524
           PN   + S++ AC   + +D G      +         +    L N+Y+  G   D ++V
Sbjct: 545 PNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQV 604

Query: 525 RKFMNSKGI 533
              M  + I
Sbjct: 605 FDRMTQRDI 613


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 195/538 (36%), Positives = 312/538 (57%), Gaps = 42/538 (7%)

Query: 48  KKLHAQIIINQHL-HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           K+LHAQ I  Q L H++ SI   ++  Y     + +   VF  + +  V+ +  +IR + 
Sbjct: 25  KQLHAQFIRTQSLSHTSASI---VISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFT 81

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
           +  L+  AL  +  M   G  PD   +P VLK+C+    L  G  +H  +V++G+D +L+
Sbjct: 82  DQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLY 141

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
            GN L+ MY K   +   R+V   MP KDVV++N+++AGYAQ+G +++AL + REM +  
Sbjct: 142 TGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSD 201

Query: 227 IKPDADTMASLLPSVTNTSPENVLSVKEM------------------------------- 255
           +KPDA T++S+LP  +     +VL  KE+                               
Sbjct: 202 LKPDAFTLSSVLPIFSEYV--DVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIED 259

Query: 256 ----FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
               F  L  ++ +SWN ++A Y  N    EA+ L+ QM    + P A++ +SV+PAC  
Sbjct: 260 SERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAH 319

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           L+ L LG+++H YV R     N+ + +ALVDMY+KCG++  AR +FD+M   D VSWT++
Sbjct: 320 LATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAI 379

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           I  + + G G++AV+LF +M   G+ P+ +AFV+VL+ACSH GL++E   YF  MT+ Y 
Sbjct: 380 IMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYG 439

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
           L   +EH+A + DLLGRAGK+EEAYD I +M +EP   +W +L+++C ++ N+++    A
Sbjct: 440 LNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVA 499

Query: 492 DHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           + IF +     G YVL+ N+YA  GRW ++ ++R  +  KG++K P  S +EM ++  
Sbjct: 500 EKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTH 557


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 195/591 (32%), Positives = 327/591 (55%), Gaps = 39/591 (6%)

Query: 4   VVLLCRHFSTTKPVQAL-VLSTQYTLLSGDACNDILDKYPDIKTL---KKLHAQIIINQH 59
           V +LC+     + +  L  +  Q T +  D    +L +   +++L   +++HA  I+   
Sbjct: 68  VSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHA-AILKSG 126

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
           +  N  +   L+  Y  CG + D R VFD I ++N+V +  +I ++V      +A   Y+
Sbjct: 127 IQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYE 186

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M + G  PD  T+  +L A +    L VG ++H  + K GL+     G  LV MY KCG
Sbjct: 187 TMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCG 246

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
            + +A+ + + +P K+VVTW  ++AGYAQ G+ D AL++  +M+   + P+  T  S+L 
Sbjct: 247 DISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQ 306

Query: 240 SVTNT---------------------------------SPENVLSVKEMFLKLDNKNLVS 266
             T                                       +   +++F  L ++++V+
Sbjct: 307 GCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVT 366

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           W  M+  YA      EA+DL+ +M+  GI+P+ ++  S L +C   + L  G+ IH+ + 
Sbjct: 367 WTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLV 426

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
                 ++ L++ALV MYAKCGS+ +AR VF+QM  ++VV+WT+MI+     G+  +A+ 
Sbjct: 427 HAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALE 486

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
            F +M   G+ PD + F SVLSAC+H GL+EEGR +F+ M   Y + P +EH++C VDLL
Sbjct: 487 YFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLL 546

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
           GRAG +EEA ++I  MP +P   +WG+L++AC ++S+++ G  AA+++  L P+  G YV
Sbjct: 547 GRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYV 606

Query: 507 LLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
            LSNIYA AGR+ D ++VR+ M  + + K PG S +E++ +V +  +  +S
Sbjct: 607 ALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKS 657



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 186/403 (46%), Gaps = 40/403 (9%)

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL--- 225
           +G V++  K G LKEA  +LN M  +    ++ +  G  Q      +L+  RE+ +    
Sbjct: 65  SGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILK 124

Query: 226 -RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAV 284
             I+P+     +LL         ++   + +F  + ++N+VSW  MI  +   +   EA 
Sbjct: 125 SGIQPNRYLENTLLSMYAKCG--SLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAY 182

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMY 344
             Y  M++ G +P+ ++  S+L A  +   L +G+K+H  + +  L+   R+  +LV MY
Sbjct: 183 KCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMY 242

Query: 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404
           AKCG +++A+ +FD++  ++VV+WT +I+ Y   GQ   A+ L  KM  + + P+ I + 
Sbjct: 243 AKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYT 302

Query: 405 SVLSACSHAGLLEEG----RYYFKI---------------------MTEQYKLVPRIEH- 438
           S+L  C+    LE G    RY  +                      + E  KL   + H 
Sbjct: 303 SILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHR 362

Query: 439 ----FACLVDLLGRAGKVEEAYDLIKQMP---MEPNERIWGSLVAACCLYSNMDIGILAA 491
               +  +V    + G  +EA DL ++M    ++P++  + S + +C   + +  G    
Sbjct: 363 DVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIH 422

Query: 492 DHIFHLAPNQSGY-YVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
             + H   +   Y    L ++YAK G   D + V   M+ + +
Sbjct: 423 QQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNV 465


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 196/539 (36%), Positives = 304/539 (56%), Gaps = 29/539 (5%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
           L K  D   +K++HAQII  ++LH++  +  KL+  +  C QM    +VF++I + NV  
Sbjct: 30  LHKCTDFNHIKEVHAQII-KRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHL 88

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +N LIR++V N     A   + +M  +G   D +TYP +LKAC+G   L     IHC V 
Sbjct: 89  YNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVE 148

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCL--KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           K G   +LF  N L+  Y KCG L    A ++  +M  KD+V+WNSM+ G  + G    A
Sbjct: 149 KYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRA 208

Query: 216 LDVCREMES---------LRIKPDADTMASLLPSVTNTSPENVLSVKEM----------- 255
             +  EM           L     A  M+            NV+S   M           
Sbjct: 209 RKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDME 268

Query: 256 -----FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
                F K+  KNLV+W ++I+ +A   +  EA  LY QME  G++P+  ++ S+L AC 
Sbjct: 269 MARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACA 328

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           +   L+LG+K+H  +++ +++ ++ + NALVDMYAKCG + +A ++F++M  +D+VSW  
Sbjct: 329 ESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNC 388

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           M+    M G G  A+ LFSKM   G  PD +  +++L AC+HAG +++G  YF  M   +
Sbjct: 389 MLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDH 448

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            +VP IEH+ C++DLLGR G++EEA+ L++ MPMEPN+ IWG+L+ AC +++ + +    
Sbjct: 449 GIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKV 508

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA-SVEMNDQVQ 548
            D +  L  +  G Y +LSNI+A AG W  V  +R  M S G++K  GA S+E++D+V 
Sbjct: 509 LDRLITLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIELDDEVH 567


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 188/548 (34%), Positives = 320/548 (58%), Gaps = 38/548 (6%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           ++D       LK++HA++++   L  +  +  KL+    + G +   R VFD++    + 
Sbjct: 27  LIDSATHKAQLKQIHARLLV-LGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIF 85

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +N +IR Y  N  + DAL +Y NM +    PD +T+P +LKACSG + L +G  +H  V
Sbjct: 86  PWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQV 145

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP--SKDVVTWNSMVAGYAQNGRFDE 214
            ++G D ++F  NGL+A+Y KC  L  AR V   +P   + +V+W ++V+ YAQNG   E
Sbjct: 146 FRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPME 205

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVT--------------------NTSPENVLSVKE 254
           AL++   M  + +KPD   + S+L + T                       P+ ++S+  
Sbjct: 206 ALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNT 265

Query: 255 M-------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAIS 301
           M             F K+ + NL+ WN MI+ YA N    EA+D++ +M    + P+ IS
Sbjct: 266 MYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTIS 325

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           + S + AC  + +L   R ++ YV R   + ++ + +AL+DM+AKCGS+  AR VFD+  
Sbjct: 326 ITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL 385

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            +DVV W++MI  YG+ G+  +A++L+  M   G+ P+ + F+ +L AC+H+G++ EG +
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
           +F +M + +K+ P+ +H+AC++DLLGRAG +++AY++IK MP++P   +WG+L++AC  +
Sbjct: 446 FFNLMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504

Query: 482 SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS- 540
            ++++G  AA  +F + P+ +G+YV LSN+YA A  W  V  VR  M  KG+ K  G S 
Sbjct: 505 RHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564

Query: 541 VEMNDQVQ 548
           VE+  +++
Sbjct: 565 VEVRGRLE 572


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 188/548 (34%), Positives = 320/548 (58%), Gaps = 38/548 (6%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           ++D       LK++HA++++   L  +  +  KL+    + G +   R VFD++    + 
Sbjct: 27  LIDSATHKAQLKQIHARLLV-LGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIF 85

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +N +IR Y  N  + DAL +Y NM +    PD +T+P +LKACSG + L +G  +H  V
Sbjct: 86  PWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQV 145

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP--SKDVVTWNSMVAGYAQNGRFDE 214
            ++G D ++F  NGL+A+Y KC  L  AR V   +P   + +V+W ++V+ YAQNG   E
Sbjct: 146 FRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPME 205

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVT--------------------NTSPENVLSVKE 254
           AL++  +M  + +KPD   + S+L + T                       P+ ++S+  
Sbjct: 206 ALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNT 265

Query: 255 M-------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAIS 301
           M             F K+ + NL+ WN MI+ YA N    EA+D++ +M    + P+ IS
Sbjct: 266 MYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTIS 325

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           + S + AC  + +L   R ++ YV R   + ++ + +AL+DM+AKCGS+  AR VFD+  
Sbjct: 326 ITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL 385

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            +DVV W++MI  YG+ G+  +A++L+  M   G+ P+ + F+ +L AC+H+G++ EG +
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
           +F  M + +K+ P+ +H+AC++DLLGRAG +++AY++IK MP++P   +WG+L++AC  +
Sbjct: 446 FFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504

Query: 482 SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS- 540
            ++++G  AA  +F + P+ +G+YV LSN+YA A  W  V  VR  M  KG+ K  G S 
Sbjct: 505 RHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564

Query: 541 VEMNDQVQ 548
           VE+  +++
Sbjct: 565 VEVRGRLE 572


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 195/582 (33%), Positives = 326/582 (56%), Gaps = 69/582 (11%)

Query: 34  CNDILDKYPDIKT---LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI 90
           C  +L     +K+    K+LHAQI+       +PS+   ++  Y     + D+  +F+ +
Sbjct: 8   CKTLLQNPSSVKSKSQAKQLHAQILRTSL--PSPSLLSTILSIYSNLNLLHDSLLIFNSL 65

Query: 91  TNK-NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG 149
            +    + +  +IR Y ++ L+  +L  +  M   G  PD   +P VLK+C+    L  G
Sbjct: 66  PSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFG 125

Query: 150 LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA------------------------- 184
             +H  ++++G+ ++L+  N L+ MY K   L+E                          
Sbjct: 126 ESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYY 185

Query: 185 ----RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP- 239
               R+V   MP +D+V+WN++++G AQNG  ++AL + REM +  ++PD+ T++S+LP 
Sbjct: 186 LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPI 245

Query: 240 ----------------SVTNTSPENVL---SVKEMFLK-------------LDNKNLVSW 267
                           ++ N    +V    S+ +M+ K             L   + +SW
Sbjct: 246 FAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISW 305

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
           N +IA    N M  E +  + QM +  I+PN +S +S++PAC  L+ L LG+++H Y+ R
Sbjct: 306 NSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR 365

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
            +   N+ + +ALVDMYAKCG++  AR +FD+M   D+VSWT+MI  Y + G  YDA++L
Sbjct: 366 SRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISL 425

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           F +M + G+ P+ +AF++VL+ACSHAGL++E   YF  MT+ Y+++P +EH+A + DLLG
Sbjct: 426 FKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLG 485

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507
           R G++EEAY+ I  M +EP   +W +L+AAC ++ N+++    +  +F + P   G YVL
Sbjct: 486 RVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVL 545

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           LSNIY+ AGRW D +++R  M  KG+KK P  S +E+ ++V 
Sbjct: 546 LSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVH 587


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 200/552 (36%), Positives = 310/552 (56%), Gaps = 42/552 (7%)

Query: 42  PDIKTLKKLHAQIIINQ---HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFF 98
            D  T+ K+HA +I+     H +SN     KL+++Y   G +   R VFD+     V  +
Sbjct: 18  KDEPTIAKIHALMILTGIFGHGNSNA----KLIQSYARLGHIESARQVFDKSPQCGVDAW 73

Query: 99  NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
           N +I +Y      ++AL +Y  M+  G  PD  TY  VLKAC+ S  L  G +     V 
Sbjct: 74  NAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVD 133

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
            G   ++F G  ++ +Y KCG + EA RV + M  +D+V W +M+ G AQNG+  EA+D+
Sbjct: 134 QGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDI 193

Query: 219 CREMESLRIKPDADTMASLLPSVTNTSPENV-LSVKEMFLKLD----------------- 260
            R+M   R++ D   M  L+ + T      + LS+    ++ D                 
Sbjct: 194 YRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAK 253

Query: 261 ---------------NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                           KN++SW+ +I+ +A N     A+ L + M+  G +P+++S+ SV
Sbjct: 254 NGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSV 313

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L AC  +  L LG+ +H Y+ R +L  +     A++DMY+KCGSL+ ARTVFDQ+  +D 
Sbjct: 314 LLACSQVGFLKLGKSVHGYIVR-RLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDS 372

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           +SW ++I++YG+ G G +A++LF +M  + + PD   F S+LSA SH+GL+E+GRY+F I
Sbjct: 373 ISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSI 432

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M  +YK+ P  +H+AC+VDLL RAG+VEEA +LI+ M  EP   IW +L++ C  +    
Sbjct: 433 MVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFL 492

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV-EMN 544
           IG +AA  +  L P+  G Y L+SN +A A RW +V  VRK M   G+KK+PG SV E+N
Sbjct: 493 IGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVN 552

Query: 545 DQVQIIALPLRS 556
            ++    +  +S
Sbjct: 553 GKLHAFLMEDKS 564


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 197/541 (36%), Positives = 303/541 (56%), Gaps = 36/541 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++  K++H    + Q + S+  +   LM  Y  CG+    + +F  +  +++V ++ +I
Sbjct: 344 DLEKGKEIHG-CALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAII 402

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            + V      +AL +++ M      P+  T   +L AC+  + L +G  IHC  VK  +D
Sbjct: 403 AALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMD 462

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            +L  G  LV+MY KCG    A    N M S+D+VTWNS++ GYAQ G    A+D+  ++
Sbjct: 463 SDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKL 522

Query: 223 ESLRIKPDADTMASLLPSV----------------------TNTSPENVL---------- 250
               I PDA TM  ++P+                       ++   +N L          
Sbjct: 523 RLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSL 582

Query: 251 -SVKEMFLKLD-NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
            S + +F K D  K+ V+WNV+IA Y  N    EA+  + QM +    PN+++  SVLPA
Sbjct: 583 PSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPA 642

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
              L+A   G   H  + +     N  + N+L+DMYAKCG L  +  +F++M  +D VSW
Sbjct: 643 AAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSW 702

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            +M+S Y + G G  A+ALFS M  S +  DS++FVSVLSAC HAGL+EEGR  F  M++
Sbjct: 703 NAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSD 762

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
           +Y + P +EH+AC+VDLLGRAG  +E    IK MP+EP+  +WG+L+ +C ++SN+ +G 
Sbjct: 763 KYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGE 822

Query: 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           +A DH+  L P    ++V+LS+IYA++GRW D  + R  MN  G+KK PG S VE+ ++V
Sbjct: 823 VALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKV 882

Query: 548 Q 548
            
Sbjct: 883 H 883



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/417 (29%), Positives = 223/417 (53%), Gaps = 37/417 (8%)

Query: 37  ILDKYPDIKTLKKLHAQIIIN--QHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           +L     +  L ++HAQII++  +H HS   + + L   +  C      R VFD   N +
Sbjct: 38  LLSSCKHLNPLLQIHAQIIVSGFKHHHSITHL-INLYSLFHKCDL---ARSVFDSTPNPS 93

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
            + +N +IR+Y  +  Y +AL +Y  M   G +PD YT+  VLKAC+G+ +L  G+  H 
Sbjct: 94  RILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHG 153

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            + + GL+ ++F G GLV MY K G LK AR V + MP +DVV WN+M+AG +Q+    E
Sbjct: 154 EIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCE 213

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSP---------------------------- 246
           A+D  R M+ + ++P + ++ +L P +   S                             
Sbjct: 214 AVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLY 273

Query: 247 ---ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
               +V   + +F ++ +++ VSW  M+A YA+N    E ++L+ +M++  +  N +S  
Sbjct: 274 SKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAV 333

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           S   A  +   L  G++IH    ++++  ++ +   L+ MYAKCG   +A+ +F  ++ +
Sbjct: 334 SAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGR 393

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           D+V+W+++I+A   +G   +A++LF +M    + P+ +  +S+L AC+   LL+ G+
Sbjct: 394 DLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGK 450



 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 226/457 (49%), Gaps = 38/457 (8%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           I  + L  +  IG  L+  Y   G +   R VFD++  ++VV +N +I     +    +A
Sbjct: 155 IDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEA 214

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
           +  +++M + G +P   +   +       +++ +   IH  V +   D++    NGL+ +
Sbjct: 215 VDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFR--RDFSSAVSNGLIDL 272

Query: 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME----------- 223
           Y KCG +  ARRV + M  +D V+W +M+AGYA NG F E L++  +M+           
Sbjct: 273 YSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSA 332

Query: 224 ----------------------SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN 261
                                 +L+ + D+D + +    V           K++F  L  
Sbjct: 333 VSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQG 392

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           ++LV+W+ +IA       P EA+ L+ +M+   ++PN +++ S+LPAC DLS L LG+ I
Sbjct: 393 RDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSI 452

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
           H +  +  +  +L    ALV MYAKCG  T A T F++M  +D+V+W S+I+ Y   G  
Sbjct: 453 HCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDP 512

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE-QYKLVPRIEHFA 440
           Y+A+ +F K+ +S + PD+   V V+ AC+    L++G     ++ +  ++    +++  
Sbjct: 513 YNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKN-- 570

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            L+D+  + G +  A  L  +     +E  W  ++AA
Sbjct: 571 ALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 190/491 (38%), Positives = 283/491 (57%), Gaps = 33/491 (6%)

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
           TR +F +I   N+  +N +IR  V+N  + DA+  Y  M   GF P+ +T+P VLKAC+ 
Sbjct: 65  TRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACAR 124

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
              L +G++IH  VVK G D ++F    LV +Y KCG L++A +V +D+P K+VV+W ++
Sbjct: 125 LLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAI 184

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV------------- 249
           ++GY   G+F EA+D+ R +  + + PD+ T+  +L + T     N              
Sbjct: 185 ISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGM 244

Query: 250 -------LSVKEMFLKLDN-------------KNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
                   S+ +M+ K  N             K++VSW  MI  YA N +P EA+DL+LQ
Sbjct: 245 VRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQ 304

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M+   ++P+  +V  VL AC  L AL LG  +   V+R +   N  L  AL+D+YAKCGS
Sbjct: 305 MQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGS 364

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           ++ A  VF  M+ +D V W ++IS   M+G    +  LF ++   G+ PD   F+ +L  
Sbjct: 365 MSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCG 424

Query: 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNER 469
           C+HAGL++EGR YF  M   + L P IEH+ C+VDLLGRAG ++EA+ LI+ MPME N  
Sbjct: 425 CTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAI 484

Query: 470 IWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529
           +WG+L+ AC ++ +  +  LA   +  L P  SG YVLLSNIY+   +W +  +VR  MN
Sbjct: 485 VWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMN 544

Query: 530 SKGIKKMPGAS 540
            K I+K PG S
Sbjct: 545 EKRIQKPPGCS 555


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 190/503 (37%), Positives = 295/503 (58%), Gaps = 36/503 (7%)

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
            + +FDE+T+++V+ +N +I  YV N L    + ++  M V G D D  T   V  AC+ 
Sbjct: 305 AQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACAN 364

Query: 143 SNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNS 201
             +LL+G  +H   +K   LD  +   N L+ MY KCG L  A RV   M  K VV+W S
Sbjct: 365 IGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTS 424

Query: 202 MVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV-------------------- 241
           M+ GY + G  D A+ +  EM+S  + PD   + S+L +                     
Sbjct: 425 MITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENN 484

Query: 242 --TNTSPENVLS-----------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
             TN+   N L+             ++F  +  K+++SWN MI  Y  NS+P EA+ L+ 
Sbjct: 485 LETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFA 544

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           +M+    +P+  +VA +LPAC  L+AL  GR+IH Y  R     +  + NA+VDMY KCG
Sbjct: 545 EMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCG 603

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
            L  AR++FD +  +D+VSWT MI+ YGM G G +A+  F++M M+G+ PD ++F+S+L 
Sbjct: 604 LLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILY 663

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
           ACSH+GLL+EG   F IM ++ ++ P +EH+AC+VDLL R G + +A+  IK MP++P+ 
Sbjct: 664 ACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDA 723

Query: 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
            IWG+L+  C ++ ++ +    A+ IF L P  +GYYVLL+NIYA+A +W +V+++RK +
Sbjct: 724 TIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKI 783

Query: 529 NSKGIKKMPGAS-VEMNDQVQII 550
             +G+KK PG S +E+  ++ I 
Sbjct: 784 GQRGLKKNPGCSWIEIKGKINIF 806



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 143/552 (25%), Positives = 255/552 (46%), Gaps = 89/552 (16%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G+KL+  Y  CG + + R VFD+++   +  +N++I  Y  +  Y ++++++K M   G
Sbjct: 187 LGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELG 246

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG--NGLVAMYGKCGCLKE 183
             P+ YT+  +LK  +    +  G Q+H  + K+G  +N +N   N L++ Y     ++ 
Sbjct: 247 IKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLG--FNSYNTVVNSLISFYFVGRKVRC 304

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           A+++ +++  +DV++WNSM++GY +NG  D  +++  +M    +  D  TM ++  +  N
Sbjct: 305 AQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACAN 364

Query: 244 TSP-----------------------ENVL-----------SVKEMFLKLDNKNLVSWNV 269
                                      N L           S   +F ++D K +VSW  
Sbjct: 365 IGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTS 424

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           MI  Y    +   A+ L+ +M+  G+ P+  +V S+L AC     L  G+ +H Y+    
Sbjct: 425 MITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENN 484

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           L+ N  + NAL DMYAKCGS+ +A  VF  M+ +DV+SW +MI  Y  +    +A+ LF+
Sbjct: 485 LETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFA 544

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGR-----------------------YYFK-- 424
           +M      PD      +L AC+    L++GR                        Y K  
Sbjct: 545 EMQRESK-PDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCG 603

Query: 425 ---IMTEQYKLVPRIE--HFACLVDLLGRAGKVEEAYDLIKQMPM---EPNERIWGSLVA 476
              +    + ++P  +   +  ++   G  G   EA +   QM M   EP+E  + S++ 
Sbjct: 604 LLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILY 663

Query: 477 ACCLYSNMDIGILAADHIF-------HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529
           AC     +D G      IF        + PN   +Y  + ++ A   R G++ +  KF+ 
Sbjct: 664 ACSHSGLLDEGW----KIFNIMKKECQIEPNLE-HYACMVDLLA---RTGNLVKAHKFIK 715

Query: 530 SKGIKKMPGASV 541
           +  IK  P A++
Sbjct: 716 AMPIK--PDATI 725



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 188/368 (51%), Gaps = 35/368 (9%)

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D   Y  +L+ C+   S+  G ++   +   G+  +   G  LV MY KCG LKE R V 
Sbjct: 149 DLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVF 208

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT------ 242
           + +    +  WN M++ Y+ +G + E++++ ++M  L IKP++ T +S+L          
Sbjct: 209 DKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVE 268

Query: 243 -----------------NTSPENVLS----------VKEMFLKLDNKNLVSWNVMIAVYA 275
                            NT   +++S           +++F +L +++++SWN MI+ Y 
Sbjct: 269 EGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYV 328

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY-VERKKLQPNL 334
            N +    ++++++M V G++ +  ++ +V  AC ++  LLLG+ +H Y ++   L   +
Sbjct: 329 KNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREV 388

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
           R  N L+DMY+KCG L  A  VF++M  + VVSWTSMI+ Y   G    A+ LF +M   
Sbjct: 389 RFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSR 448

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           G+ PD  A  S+L+AC+  G L+ G+     + E           A L D+  + G +++
Sbjct: 449 GVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNA-LTDMYAKCGSMKD 507

Query: 455 AYDLIKQM 462
           A+D+   M
Sbjct: 508 AHDVFSHM 515



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 172/360 (47%), Gaps = 36/360 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K LH+  I    L         L+  Y  CG +     VF+ +  K VV +  +I  YV 
Sbjct: 372 KVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVR 431

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
             L   A+ ++  M   G  PD Y    +L AC+ + +L  G  +H  + +  L+ N F 
Sbjct: 432 EGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFV 491

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L  MY KCG +K+A  V + M  KDV++WN+M+ GY +N   +EAL +  EM+    
Sbjct: 492 SNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQR-ES 550

Query: 228 KPDADTMASLLPS---------------------------VTNTSPENVLS------VKE 254
           KPD  T+A +LP+                           VTN   +  +        + 
Sbjct: 551 KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARS 610

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F  + NK+LVSW VMIA Y  +   +EA++ + QM + GIEP+ +S  S+L AC     
Sbjct: 611 LFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGL 670

Query: 315 LLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMI 372
           L  G KI   ++++ +++PNL     +VD+ A+ G+L +A      M  + D   W +++
Sbjct: 671 LDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALL 730



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 163/382 (42%), Gaps = 59/382 (15%)

Query: 207 AQNGRFD-----EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL---- 257
           +QN  FD       L +C E +S+R   D   + S++ S +    + +L VK +F+    
Sbjct: 143 SQNSNFDLGAYCSILQLCAERKSIR---DGRRVRSIIES-SGVMIDGILGVKLVFMYVKC 198

Query: 258 -----------KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
                      KL    +  WN+MI+ Y+ +    E+++L+ QM   GI+PN+ + +S+L
Sbjct: 199 GDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSIL 258

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
                ++ +  GR++H  + +        + N+L+  Y     +  A+ +FD++  +DV+
Sbjct: 259 KCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVI 318

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           SW SMIS Y  +G     + +F KML+ G+  D    V+V  AC++ G L  G+      
Sbjct: 319 SWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYS 378

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEA------------------------------- 455
            +   L   +     L+D+  + G +  A                               
Sbjct: 379 IKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGA 438

Query: 456 ---YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV-LLSNI 511
              +D +K   + P+     S++ AC +  N+  G +  D+I       + +    L+++
Sbjct: 439 IKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDM 498

Query: 512 YAKAGRWGDVKRVRKFMNSKGI 533
           YAK G   D   V   M  K +
Sbjct: 499 YAKCGSMKDAHDVFSHMKKKDV 520


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 196/541 (36%), Positives = 302/541 (55%), Gaps = 36/541 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++  K++H    + Q + S+  +   LM  Y  CG+    + +F  +  +++V ++ +I
Sbjct: 344 DLEKGKEIHG-CALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAII 402

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            + V      +AL +++ M      P+  T   +L AC+  + L +G  IHC  VK  +D
Sbjct: 403 AALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMD 462

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            +L  G  LV+MY KCG    A    N M S+D+VTWNS++ GYAQ G    A+D+  ++
Sbjct: 463 SDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKL 522

Query: 223 ESLRIKPDADTMASLLPSV----------------------TNTSPENVL---------- 250
               I PDA TM  ++P+                       ++   +N L          
Sbjct: 523 RLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSL 582

Query: 251 -SVKEMFLKLD-NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
            S + +F K D  K+ V+WNV+IA Y  N    EA+  + QM +    PN+++  SVLPA
Sbjct: 583 PSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPA 642

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
              L+A   G   H  + +     N  + N+L+DMYAKCG L  +  +F++M  +D VSW
Sbjct: 643 AAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSW 702

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            +M+S Y + G G  A+ALFS M  S +  DS++FVSVLSAC H GL+EEGR  F  M++
Sbjct: 703 NAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSD 762

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
           +Y + P +EH+AC+VDLLGRAG  +E    IK MP+EP+  +WG+L+ +C ++SN+ +G 
Sbjct: 763 KYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGE 822

Query: 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           +A DH+  L P    ++V+LS+IYA++GRW D  + R  MN  G+KK PG S VE+ ++V
Sbjct: 823 VALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKV 882

Query: 548 Q 548
            
Sbjct: 883 H 883



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/417 (29%), Positives = 223/417 (53%), Gaps = 37/417 (8%)

Query: 37  ILDKYPDIKTLKKLHAQIIIN--QHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           +L     +  L ++HAQII++  +H HS   + + L   +  C      R VFD   N +
Sbjct: 38  LLSSCKHLNPLLQIHAQIIVSGFKHHHSITHL-INLYSLFHKCDL---ARSVFDSTPNPS 93

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
            + +N +IR+Y  +  Y +AL +Y  M   G +PD YT+  VLKAC+G+ +L  G+  H 
Sbjct: 94  RILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHG 153

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            + + GL+ ++F G GLV MY K G LK AR V + MP +DVV WN+M+AG +Q+    E
Sbjct: 154 EIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCE 213

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSP---------------------------- 246
           A+D  R M+ + ++P + ++ +L P +   S                             
Sbjct: 214 AVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLY 273

Query: 247 ---ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
               +V   + +F ++ +++ VSW  M+A YA+N    E ++L+ +M++  +  N +S  
Sbjct: 274 SKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAV 333

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           S   A  +   L  G++IH    ++++  ++ +   L+ MYAKCG   +A+ +F  ++ +
Sbjct: 334 SAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGR 393

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           D+V+W+++I+A   +G   +A++LF +M    + P+ +  +S+L AC+   LL+ G+
Sbjct: 394 DLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGK 450



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 226/457 (49%), Gaps = 38/457 (8%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           I  + L  +  IG  L+  Y   G +   R VFD++  ++VV +N +I     +    +A
Sbjct: 155 IDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEA 214

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
           +  +++M + G +P   +   +       +++ +   IH  V +   D++    NGL+ +
Sbjct: 215 VDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFR--RDFSSAVSNGLIDL 272

Query: 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME----------- 223
           Y KCG +  ARRV + M  +D V+W +M+AGYA NG F E L++  +M+           
Sbjct: 273 YSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSA 332

Query: 224 ----------------------SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN 261
                                 +L+ + D+D + +    V           K++F  L  
Sbjct: 333 VSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQG 392

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           ++LV+W+ +IA       P EA+ L+ +M+   ++PN +++ S+LPAC DLS L LG+ I
Sbjct: 393 RDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSI 452

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
           H +  +  +  +L    ALV MYAKCG  T A T F++M  +D+V+W S+I+ Y   G  
Sbjct: 453 HCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDP 512

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE-QYKLVPRIEHFA 440
           Y+A+ +F K+ +S + PD+   V V+ AC+    L++G     ++ +  ++    +++  
Sbjct: 513 YNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKN-- 570

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            L+D+  + G +  A  L  +     +E  W  ++AA
Sbjct: 571 ALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 191/521 (36%), Positives = 302/521 (57%), Gaps = 44/521 (8%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           IL   P+I  LKK+HA I+    L  +  +  K++      G+      +F  + + N  
Sbjct: 20  ILKDCPNIVELKKIHAHIV-KFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAF 78

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNM--SVHGFDP---DCYTYPCVLKACSGSNSLLVGLQ 151
            +N +IR+Y +N +Y  A+ VYK M  + HG +P   D +T+P V+K+C+G     +G Q
Sbjct: 79  LYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQ 138

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H  V K G   N    N LV MY KC  L +A RV  +M  +D V+WN++++G+ + G+
Sbjct: 139 VHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQ 198

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
              A  +  EM+                                     +K + SW  ++
Sbjct: 199 MRRARAIFEEMQ-------------------------------------DKTIFSWTAIV 221

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           + YA     A+A++ + +M++ GIEP+ IS+ SVLP C  L AL LG+ IH Y ++    
Sbjct: 222 SGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFL 281

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            N+ + NAL++MYAKCGS+ + R +FDQM+ +DV+SW++MI      G+  +A+ LF +M
Sbjct: 282 RNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEM 341

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
             + + P  I FV +L+AC+HAGLL EG  YF+ M   Y + P +EH+ CLV+LLG +G+
Sbjct: 342 QKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGR 401

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
           +++A +L+K+MP +P+  IWGSL+++C  + N+ I ++A +H+  L P  +G YVLLSN+
Sbjct: 402 LDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNL 461

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQIIA 551
           YA  G+W  V R+RK M SK +KK PG +S+E+++ VQ  A
Sbjct: 462 YADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFA 502


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 183/509 (35%), Positives = 295/509 (57%), Gaps = 42/509 (8%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           I  LKK+HA ++      SN  +  K++ +    G +     +F ++ + N+  +N +IR
Sbjct: 23  ITQLKKIHAHVVKLSLSQSNFLV-TKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIR 81

Query: 104 SYVNNYLYYDALHVYKNMSVHGFD---PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           +Y +N  +  A+ V+  M  H  +   PD +T+P V+K+C+G     +G+Q+H  V K G
Sbjct: 82  TYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKFG 141

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
            D++    N L+ MY K G L  A +V  +M  +DV++WNS++ GY + G+ + A     
Sbjct: 142 ADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSA----- 196

Query: 221 EMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                                           +E+F  +  + +VSW  MI  Y      
Sbjct: 197 --------------------------------RELFDDMPVRTIVSWTTMITGYGRMGCY 224

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            +A+D++ +M++ GIEP+ IS+ +VLPAC  L AL +G+ IH Y ++        + NAL
Sbjct: 225 GDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNAL 284

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           ++MYAKCG + EA  +FDQ+  +DV+SW++MI      G+GY+A+ LF +M    + P+ 
Sbjct: 285 IEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNE 344

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           I F+ VL ACSH GL +EG  YF +M+  Y + P IEH+ CL+DLLGR+G + +A D I 
Sbjct: 345 ITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTIS 404

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD 520
           +MP++P+ RIW SL+++C ++ N+ I ++A   +  L P +SG YVLL+N+YA+ G+W D
Sbjct: 405 KMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLMELEPEESGNYVLLANMYAEHGKWED 464

Query: 521 VKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           V  +RK + +K IKK PG +S+E+N+ VQ
Sbjct: 465 VSNIRKLIRNKRIKKTPGSSSIEVNNVVQ 493


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 189/478 (39%), Positives = 273/478 (57%), Gaps = 42/478 (8%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G++   R   D +T K VV +N +I  YV++  + +AL +++ M + G   D +TY  VL
Sbjct: 239 GELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVL 298

Query: 138 KACSGSNSLLVGLQIHCSVVKV----GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
            AC+ +   L G Q+H  +++      LD++L   N L  +Y KCG + EAR+V N MP 
Sbjct: 299 SACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPV 358

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK 253
           KD+V+WN++++GY   GR DEA                                     K
Sbjct: 359 KDLVSWNAILSGYVNAGRIDEA-------------------------------------K 381

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
             F ++  +NL++W VMI+  A N    E++ L+ +M+  G EP   + A  + AC  L+
Sbjct: 382 SFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLA 441

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           AL+ GR++H  + R     +L   NAL+ MYAKCG +  A  +F  M   D VSW +MI+
Sbjct: 442 ALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIA 501

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
           A G  G G  A+ LF  ML   + PD I F++VLS CSHAGL+EEG  YFK M+  Y + 
Sbjct: 502 ALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGIC 561

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P  +H+A ++DLL RAGK  EA D+I+ MP+EP   IW +L+A C ++ NMD+GI AA+ 
Sbjct: 562 PGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAER 621

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           +F L P   G YVLLSN+YA  GRW DV +VRK M  KG+KK PG S +E+ ++V + 
Sbjct: 622 LFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVF 679



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 162/370 (43%), Gaps = 30/370 (8%)

Query: 11  FSTTKPVQALVLSTQ------YTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNP 64
           F   K V A +L T+      ++L   +A   +  K   +   +++  Q+ +   +  N 
Sbjct: 307 FLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNA 366

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
                ++  Y   G++ + +  F+E+  +N++ + V+I     N    ++L ++  M   
Sbjct: 367 -----ILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSE 421

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           GF+P  Y +   + AC+   +L+ G Q+H  +V++G D +L  GN L+ MY KCG ++ A
Sbjct: 422 GFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAA 481

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
             +   MP  D V+WN+M+A   Q+G   +AL++   M    I PD  T  ++L + ++ 
Sbjct: 482 HCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHA 541

Query: 245 SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
                       ++  ++   S + +  +       A  +DL  +        + I    
Sbjct: 542 G----------LVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMP 591

Query: 305 VLPACGDLSALLLGRKIH-------RYVERK-KLQPNLRLENALV-DMYAKCGSLTEART 355
           V P      ALL G +IH       +  ER  +L P       L+ +MYA  G   +   
Sbjct: 592 VEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAK 651

Query: 356 VFDQMRCQDV 365
           V   MR + V
Sbjct: 652 VRKLMRDKGV 661



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 158/384 (41%), Gaps = 91/384 (23%)

Query: 133 YPCVLKACSGSN--SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
           Y   L+ C   N  S  +   +H  ++  G     +  N L+ +Y K   L  A  + ++
Sbjct: 16  YAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDE 75

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL 250
           +   D+V   +++A ++  G  + A                                   
Sbjct: 76  IRQPDIVARTTLIAAHSSAGNSNLA----------------------------------- 100

Query: 251 SVKEMFLK--LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
             +E+F    L  ++ V +N MI  Y++N+    A++L+  +  +G  P+  +  SVL  
Sbjct: 101 --REIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVL-- 156

Query: 309 CGDLSALLLGRK----IHRYVERKKLQPNLRLENALVDMYAKCG---------SLTEART 355
            G L+ ++   K    IH  V +        + NAL+ ++ KC           +  AR 
Sbjct: 157 -GALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARK 215

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQ------------------------GY-------DA 384
           +FD+M  +D +SWT+MI+ Y  +G+                        GY       +A
Sbjct: 216 LFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEA 275

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR--YYFKIMTE-QYKLVPRIEHFAC 441
           + +F KM + G+  D   + SVLSAC++AG    G+  + + + TE +  L   +     
Sbjct: 276 LEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNA 335

Query: 442 LVDLLGRAGKVEEAYDLIKQMPME 465
           L  L  + GKV+EA  +  QMP++
Sbjct: 336 LATLYWKCGKVDEARQVFNQMPVK 359


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 201/562 (35%), Positives = 311/562 (55%), Gaps = 39/562 (6%)

Query: 25  QYTLLSGDACNDILDKYPDIKTLKK---LHAQIIINQHLHSNPSIGLKLMRTYGACGQMV 81
           QY L S   C  +L  + + K+ K+   LHA +I    L +N  +  KL   Y  CG M 
Sbjct: 54  QYPLTSLQ-CGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMS 112

Query: 82  DTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACS 141
               +FD I  KN   +N +IR Y +N L   +L +Y+ M   G   D +TYP VLKAC 
Sbjct: 113 QAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACG 172

Query: 142 GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNS 201
               + +G ++H  VV  GL+ +++ GN L+AMY K G +  AR V + M  +D+ +WN+
Sbjct: 173 DLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNT 232

Query: 202 MVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------------------- 240
           M++GYA+N     A  V   M    +  D  T+  LL +                     
Sbjct: 233 MISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNS 292

Query: 241 -------VTNTSPEN------VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
                   TN+  E       ++  + +F ++  K+ VSWN MI  YA N    E++ L+
Sbjct: 293 IGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLF 352

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
            +M + G  P+ ++  +VL AC  ++AL  G  IH Y+ +K    N  +  ALVDMY+KC
Sbjct: 353 RRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKC 412

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           GSL  +R VFD+M  + +VSW++M++ YG+ G+G +A+++   M  + + PD+  F S+L
Sbjct: 413 GSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSIL 472

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
           SACSHAGL+ EG+  F  M ++Y + P + H++C+VDLLGRAG ++EAY +I+ M ++P 
Sbjct: 473 SACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPT 532

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527
             IW +L+ A  L+ N+ +  ++A  +F + P     Y+ LSNIYA   RW DV+RVR  
Sbjct: 533 SDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAM 592

Query: 528 MNSKGIKKMPGAS-VEMNDQVQ 548
           +  KG+KK PG S +E+++ V 
Sbjct: 593 VRRKGLKKSPGCSFIELDNMVH 614


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 190/504 (37%), Positives = 294/504 (58%), Gaps = 34/504 (6%)

Query: 70   LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
            L+ TY   G++     +FDE+ +++VV +N +I   V N   + AL  +  M +     D
Sbjct: 594  LIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVD 653

Query: 130  CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
              T    + AC+   SL +G  +H   VK      +   N L+ MY KCG L +A +   
Sbjct: 654  LATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFE 713

Query: 190  DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
             M  K VV+W S++A Y + G +D+A+ +  EMES  + PD  +M S+L +         
Sbjct: 714  KMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDK 773

Query: 241  ---VTNTSPENVL------------------SVKEMFLKLDN---KNLVSWNVMIAVYAN 276
               V N   +N +                  S++E +L       K++VSWN MI  Y+ 
Sbjct: 774  GRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSK 833

Query: 277  NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
            NS+P EA+ L+ +M+     P+ I++A +LPACG L+AL +GR IH  + R      L +
Sbjct: 834  NSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHV 892

Query: 337  ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
             NAL+DMY KCGSL  AR +FD +  +D+++WT MIS  GM G G +A+A F KM ++G+
Sbjct: 893  ANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGI 952

Query: 397  CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
             PD I F S+L ACSH+GLL EG  +F  M  +  + P++EH+AC+VDLL R G + +AY
Sbjct: 953  KPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAY 1012

Query: 457  DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
            +LI+ MP++P+  IWG+L+  C ++ ++++    A+H+F L P+ +GYYVLL+NIYA+A 
Sbjct: 1013 NLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAE 1072

Query: 517  RWGDVKRVRKFMNSKGIKKMPGAS 540
            +W +VK++R+ +  +G+KK PG S
Sbjct: 1073 KWEEVKKLRERIGKRGLKKSPGCS 1096



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 147/529 (27%), Positives = 252/529 (47%), Gaps = 45/529 (8%)

Query: 20  LVLSTQYTLLSGDACNDILDKYPDIKTLK--KLHAQIIINQHLHSNPSIGLKLMRTYGAC 77
           L+  +Q + L  +A + IL    + K L+  K+   +I +  +     +G KL+  Y +C
Sbjct: 440 LLRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSC 499

Query: 78  GQMVDTRHVFDEITNKNVVF-FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCV 136
           G + + R +FD I + N VF +N+++  Y     Y ++++++K M   G   + YT+ C+
Sbjct: 500 GALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCI 559

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGL-DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
           LK  +    +    +IH  V K+G   YN    N L+A Y K G +  A ++ +++  +D
Sbjct: 560 LKCFATLGRVGECKRIHGCVYKLGFGSYNTVV-NSLIATYFKSGEVDSAHKLFDELGDRD 618

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP--------- 246
           VV+WNSM++G   NG    AL+   +M  LR+  D  T+ + + +  N            
Sbjct: 619 VVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHG 678

Query: 247 ------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                                    N+    + F K+  K +VSW  +IA Y    +  +
Sbjct: 679 QGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDD 738

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A+ L+ +ME  G+ P+  S+ SVL AC   ++L  GR +H Y+ +  +   L + NAL+D
Sbjct: 739 AIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMD 798

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MYAKCGS+ EA  VF Q+  +D+VSW +MI  Y  +    +A+ LF++M      PD I 
Sbjct: 799 MYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKESR-PDGIT 857

Query: 403 FVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
              +L AC     LE GR  +  I+   Y     + +   L+D+  + G +  A  L   
Sbjct: 858 MACLLPACGSLAALEIGRGIHGCILRNGYSSELHVAN--ALIDMYVKCGSLVHARLLFDM 915

Query: 462 MPMEPNERIWGSLVAACCLY--SNMDIGILAADHIFHLAPNQSGYYVLL 508
           +P E +   W  +++ C ++   N  I       I  + P++  +  +L
Sbjct: 916 IP-EKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSIL 963



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 162/343 (47%), Gaps = 27/343 (7%)

Query: 27   TLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHV 86
            ++L   AC + LDK  D+      H  I  N      P +   LM  Y  CG M +   V
Sbjct: 760  SVLHACACGNSLDKGRDV------HNYIRKNNMALCLP-VSNALMDMYAKCGSMEEAYLV 812

Query: 87   FDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL 146
            F +I  K++V +N +I  Y  N L  +AL ++  M      PD  T  C+L AC    +L
Sbjct: 813  FSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAAL 871

Query: 147  LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY 206
             +G  IH  +++ G    L   N L+ MY KCG L  AR + + +P KD++TW  M++G 
Sbjct: 872  EIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGC 931

Query: 207  AQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN--------VLSVKEMFLK 258
              +G  +EA+   ++M    IKPD  T  S+L + +++   N        ++S   M  K
Sbjct: 932  GMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPK 991

Query: 259  LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
            L++     +  M+ + A     ++A +L   +E   I+P+A    ++L  C     + L 
Sbjct: 992  LEH-----YACMVDLLARTGNLSKAYNL---IETMPIKPDATIWGALLCGCRIHHDVELA 1043

Query: 319  RKIHRYVERKKLQP-NLRLENALVDMYAKCGSLTEARTVFDQM 360
             K+  +V   +L+P N      L ++YA+     E + + +++
Sbjct: 1044 EKVAEHV--FELEPDNAGYYVLLANIYAEAEKWEEVKKLRERI 1084



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 19/230 (8%)

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F KLD       N  I  +        AV+L    +   ++ NA S  S+L  C +   L
Sbjct: 416 FAKLDE------NTKICKFCEVGDLRNAVELLRMSQKSELDLNAYS--SILQLCAEHKCL 467

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD-VVSWTSMISA 374
             G+ +H  +    +     L   LV MY  CG+L E R +FD +   + V  W  M+S 
Sbjct: 468 QEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSE 527

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY----YFKIMTEQY 430
           Y   G   +++ LF KM   G+  +S  F  +L   +  G + E +      +K+    Y
Sbjct: 528 YAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSY 587

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
             V        L+    ++G+V+ A+ L  ++  + +   W S+++ C +
Sbjct: 588 NTVVN-----SLIATYFKSGEVDSAHKLFDELG-DRDVVSWNSMISGCVM 631


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 187/548 (34%), Positives = 319/548 (58%), Gaps = 38/548 (6%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           ++D       L+++HA++++   L  +  +  KL+    + G +   R VFD++    V 
Sbjct: 27  LIDSSTHKAQLRQIHARLLV-LGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVF 85

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +N +IR Y  N  + DAL +Y  M +    PD +T+P +LKAC G + L +G  +H  V
Sbjct: 86  PWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQV 145

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP--SKDVVTWNSMVAGYAQNGRFDE 214
            ++G + ++F  NGL+A+Y KC  L  AR V   +P   + +V+W ++V+ YAQNG   E
Sbjct: 146 FRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVE 205

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVT--------------------NTSPENVLSVKE 254
           AL++  +M  + +KPD   + S+L + T                     T P+ ++S+  
Sbjct: 206 ALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNT 265

Query: 255 M-------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAIS 301
           M             F K+ + NL+ WN MI+ YA N    +A+DL+ +M    + P+ IS
Sbjct: 266 MYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTIS 325

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           + S + AC  + +L   R +  YV R   + ++ + +AL+DM+AKCGS+  AR+VFD+  
Sbjct: 326 ITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTL 385

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            +DVV W++MI  YG+ GQ  +A++L+  M   G+ P+ + F+ +L AC+H+G++ EG +
Sbjct: 386 DRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWW 445

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
           +F  M + +K+ P+ +H+AC++DLLGRAG +++AY++IK MP++P   +WG+L++AC  +
Sbjct: 446 FFNRMAD-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504

Query: 482 SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS- 540
            ++++G  AA  +F + P+ +G+YV LSN+YA A  W  V  VR  M  KG+ K  G S 
Sbjct: 505 RHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564

Query: 541 VEMNDQVQ 548
           VE+  +++
Sbjct: 565 VEVRGRLE 572


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 200/538 (37%), Positives = 303/538 (56%), Gaps = 39/538 (7%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMR--TYGACGQMVDTRHVFDEITNKNV 95
           L+K   +  LK++HAQ++    L  +P    K++        G +   R VF++I N   
Sbjct: 47  LEKCTTMSQLKQIHAQML-RTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTT 105

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
              N +IR Y N  L   A+  Y+ M + G DPD +T+P + K+C     L  G Q+HC 
Sbjct: 106 FTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCH 162

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
             K+G   + +  N L+ MY  CGCL  AR+V + M +K VV+W +M+  YAQ     EA
Sbjct: 163 STKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEA 222

Query: 216 LDVCREMESLRIKPDADTMASLLPSV------------------TNTSPENVLS------ 251
           + + R ME   +KP+  T+ ++L +                   T      VL+      
Sbjct: 223 IKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDV 282

Query: 252 ---------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
                     +++F K+  KNL  WN+MI  +  +S   EA+ L+ +M++ G++ + +++
Sbjct: 283 YCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTM 342

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
           AS+L AC  L AL LG+ +H Y+E++K++ ++ L  ALVDMYAKCGS+  A  VF +M  
Sbjct: 343 ASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPE 402

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           +DV++WT++I    M GQG  A+ LF +M MS + PD+I FV VL+ACSHAGL+ EG  Y
Sbjct: 403 KDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAY 462

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           F  M  +Y + P IEH+ C+VD+LGRAG++ EA DLI+ MPM P+  +   L++AC ++ 
Sbjct: 463 FNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHG 522

Query: 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           N+ +   AA  +  L P   G YVLLSNIY+    W   K++R+ M  + IKK PG S
Sbjct: 523 NLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCS 580


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 188/545 (34%), Positives = 312/545 (57%), Gaps = 35/545 (6%)

Query: 34  CNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
           C  ++ +   ++ LK LHA I+   HLH  P +   L+  Y + G +     +F    + 
Sbjct: 7   CIALIKQCVTLEALKSLHASIL-KSHLH--PHLCTSLIAQYASLGSISHAYALFSTSHSS 63

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           NV  +N +IR++ N     ++L +Y  M   G     +T+P +LKAC       +G + H
Sbjct: 64  NVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAH 123

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
             VV  G + ++F  N L+AMYG+ GC   +R+V   MP ++VV+W+SMV  YA NGR++
Sbjct: 124 AHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYE 183

Query: 214 EALDVCREMESLRIKPDADTMASLLPSV-------------------TNTSPEN------ 248
           E L +   M +  I P+  ++ + +  +                   ++ S +N      
Sbjct: 184 EGLLLFWRMLNEGIAPNRGSIVNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAMGMY 243

Query: 249 -----VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
                +   +  F  + +K+LV+W  MI  Y    +P  A++L+ QM++ GI P+++++ 
Sbjct: 244 ARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLL 303

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           S++ A  +L++  L R +H  + R   + ++ L+ A++D+Y KCG+L  AR  FD+M  +
Sbjct: 304 SLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSAR 363

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           +++SW++MIS YGM G G +A+ LF +M  S + PD IAFV VLSACSH GL+ EG   F
Sbjct: 364 NLISWSTMISGYGMHGHGREALCLFDQMKAS-IKPDHIAFVMVLSACSHGGLIAEGWECF 422

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
           K M   + + PR EH+AC+VDLLGRAG++ EA   I++MP+ P+  +WG+L+ AC ++SN
Sbjct: 423 KAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHSN 482

Query: 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VE 542
           ++    AA H+F+L     G Y+LLSNIYA +G+  +   +R  M S+G++K  G + +E
Sbjct: 483 LETAETAARHLFNLDAENPGRYILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTIIE 542

Query: 543 MNDQV 547
           + ++V
Sbjct: 543 IKNKV 547


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 187/487 (38%), Positives = 273/487 (56%), Gaps = 48/487 (9%)

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
            VF +I N N+  +N  IR +  +     + H Y     +G  PD  TYP ++KAC+   
Sbjct: 68  QVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKG 127

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
           SL +G+Q H  +++ G D +++  N LV MY   G +K A  V   +   DVV+W SMVA
Sbjct: 128 SLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVA 187

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL 264
           GY ++G                                     +V S +++F K+  KNL
Sbjct: 188 GYIKSG-------------------------------------DVTSARKLFDKMPEKNL 210

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           V+W+VMI+ YA NS   +A++LY  ++  G+  N   + SV+ +C  L AL LG + H Y
Sbjct: 211 VTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDY 270

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
           + R K+  NL L  ALVDMYA+CGS+ +A  VFDQ+  +D +SWT++I+ + M G    A
Sbjct: 271 ILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKA 330

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           +  FS+M  +GL P  I F +VLSACSH GL+E G   F+ M   Y++ PR+EH+ C+VD
Sbjct: 331 LEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVD 390

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY 504
           LLGRAGK+ EA   + +MPM+PN  IWG+L+ AC ++ N +I   A   +  L P  SGY
Sbjct: 391 LLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGY 450

Query: 505 YVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV-EMNDQVQIIALPLRSSKCLTTG 563
           YVLLSNIYA+  +W +V+ +R+ M  +G+ K PG ++ EM+ +V             T G
Sbjct: 451 YVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVH----------KFTIG 500

Query: 564 PKNVPPI 570
            K  P I
Sbjct: 501 DKTHPEI 507



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 118/240 (49%), Gaps = 8/240 (3%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y   G +   R +FD++  KN+V ++V+I  Y  N  +  A+ +Y  +   G   +    
Sbjct: 189 YIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVM 248

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             V+ +C+   +L +G + H  +++  +  NL  G  LV MY +CG + +A  V + +P 
Sbjct: 249 VSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPG 308

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS-PENVLSV 252
           +D ++W +++AG+A +G  ++AL+    ME   + P   T  ++L + ++    E  L +
Sbjct: 309 RDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLEL 368

Query: 253 KEMFLKLDNK---NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            E  +K D +    L  +  M+ +       AEA     +M    ++PNA    ++L AC
Sbjct: 369 FES-MKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMP---MKPNAPIWGALLGAC 424



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 98/212 (46%), Gaps = 7/212 (3%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++ H  I+ N+ +  N  +G  L+  Y  CG +     VFD++  ++ + +  LI  +  
Sbjct: 265 ERAHDYILRNK-MTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAM 323

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYNLF 166
           +     AL  +  M   G  P   T+  VL ACS    +  GL++  S+ +   ++  L 
Sbjct: 324 HGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLE 383

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           +   +V + G+ G L EA + +N+MP K +   W +++     +   + A    + +  +
Sbjct: 384 HYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTL--I 441

Query: 226 RIKPDADTMASLLPSV--TNTSPENVLSVKEM 255
            +KP+      LL ++       ENV ++++M
Sbjct: 442 ELKPEHSGYYVLLSNIYARTNKWENVENIRQM 473


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 190/537 (35%), Positives = 305/537 (56%), Gaps = 35/537 (6%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +LH  ++I     S+P++   ++  Y  CG + D R +FD +   + V +N LI  YV N
Sbjct: 299 QLHG-LVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQN 357

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
               +A+ ++K M   G   D  T+   L +   S SL    ++H  +V+ G+ ++++  
Sbjct: 358 GFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLK 417

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           + LV +Y K G ++ A +        DV    +M++GY  NG   EAL++ R +    + 
Sbjct: 418 SALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMV 477

Query: 229 PDADTMASLLPS----------------VTNTSPENVLSVK-----------------EM 255
           P+  TMAS+LP+                +     ENV  V                  + 
Sbjct: 478 PNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQF 537

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F ++  K+ V WN+MI  ++ N  P  A+DL+ QM   G + +++S+++ L AC +  AL
Sbjct: 538 FRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPAL 597

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             G+++H +V R     +  + + L+DMY+KCG L  AR+VFD M  ++ VSW S+I+AY
Sbjct: 598 YYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAY 657

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
           G  G+  + + LF +M+ +G+ PD + F+ ++SAC HAGL++EG YYF+ MTE+Y +  R
Sbjct: 658 GNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICAR 717

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
           +EHFAC+VDL GRAG++ EA+D IK MP  P+   WGSL+ AC L+ N+++  LA+ H+ 
Sbjct: 718 MEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGACRLHGNVELAKLASKHLV 777

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIA 551
            L PN SGYYVLLSN++A AG W  V +VR  M  KG++K+PG S +++N    + +
Sbjct: 778 ELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQKIPGYSWIDVNGGTHMFS 834



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/455 (25%), Positives = 231/455 (50%), Gaps = 37/455 (8%)

Query: 45  KTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           + ++++HA++++   ++ + ++G +++  Y  C    D  ++F  +     + +N LIR 
Sbjct: 93  QQVRQIHAKVLVCG-MNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRG 151

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
           +     +  AL  +  M      PD YT+P V+KAC G N++ +   +H     +G   +
Sbjct: 152 FSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMD 211

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
           LF G+ L+ +Y   G + +A+ + +++P +D + WN M+ GY +NG F+ AL   +EM +
Sbjct: 212 LFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRN 271

Query: 225 LRIKPDADTMASLL---------------------------PSVTNT------SPENVLS 251
             +KP++ +   LL                           P+V NT         N+  
Sbjct: 272 SCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFD 331

Query: 252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
            +++F  +   + V+WN +IA Y  N    EAV L+  M   G++ ++I+ AS LP+   
Sbjct: 332 ARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLK 391

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
             +L   +++H Y+ R  +  ++ L++ALVD+Y K G +  A   F Q    DV   T+M
Sbjct: 392 SGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAM 451

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQY 430
           IS Y ++G   +A+ LF  ++  G+ P+ +   SVL AC+    L+ G+  +  I+ +  
Sbjct: 452 ISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGL 511

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME 465
           + V ++   + +  +  ++G+++ AY   ++MP++
Sbjct: 512 ENVCQVG--SSITYMYAKSGRLDLAYQFFRRMPVK 544



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 197/421 (46%), Gaps = 55/421 (13%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNP-SIGLK--LMRTYGACGQMVDTRHVFDEITNKNVV 96
           K   +K  K++H+ I+     H  P  + LK  L+  Y   G +      F + T  +V 
Sbjct: 391 KSGSLKYCKEVHSYIV----RHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVA 446

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
               +I  YV N L  +AL++++ +   G  P+C T   VL AC+   SL +G ++HC +
Sbjct: 447 VCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDI 506

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           +K GL+     G+ +  MY K G L  A +    MP KD V WN M+  ++QNG+ + A+
Sbjct: 507 LKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAI 566

Query: 217 DVCREMESLRIKPDADTMASLLPSVTN-------------------TSPENVLSV----- 252
           D+ R+M +   K D+ ++++ L +  N                    S   V S      
Sbjct: 567 DLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMY 626

Query: 253 ---------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
                    + +F  +D KN VSWN +IA Y N+  P E +DL+ +M   GI+P+ ++  
Sbjct: 627 SKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFL 686

Query: 304 SVLPACGDLSALLLGRKIHRY---VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
            ++ ACG   A L+   I+ +    E   +   +     +VD+Y + G L EA   FD +
Sbjct: 687 VIMSACGH--AGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEA---FDTI 741

Query: 361 RCQ----DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL 416
           +      D  +W S++ A  + G   +   L SK L+  L P++  +  +LS   HAG  
Sbjct: 742 KSMPFTPDAGTWGSLLGACRLHGN-VELAKLASKHLVE-LDPNNSGYYVLLSNV-HAGAG 798

Query: 417 E 417
           E
Sbjct: 799 E 799


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 200/538 (37%), Positives = 307/538 (57%), Gaps = 36/538 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LH  I+ +     N S+G  L+  Y    ++   R VFDE+T ++V+ +N +I  YV+
Sbjct: 215 EQLHGYILKSGFGERN-SVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVS 273

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N L    L V+  M   G + D  T   V   C+ S  + +G  +HC  VK         
Sbjct: 274 NGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRF 333

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY KCG L  A+ V  +M  + VV++ SM+AGYA+ G   EA+ +  EME   I
Sbjct: 334 CNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI 393

Query: 228 KPDADTMASLL------------PSVTNTSPENVL------------------SVKE--- 254
            PD  T+ ++L              V     EN +                  S++E   
Sbjct: 394 SPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAEL 453

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY-LQMEVHGIEPNAISVASVLPACGDLS 313
           +F ++  K+++SWN +I  Y+ N    EA+ L+ L +      P+  +VA VLPAC  LS
Sbjct: 454 VFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLS 513

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           A   GR+IH Y+ R     +  + N+LVDMYAKCG+L  AR +FD +  +D+VSWT MI+
Sbjct: 514 AFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIA 573

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
            YGM G G +A+ALF++M  +G+ PD I+FVS+L ACSH+GL++EG  +F IM  + K+ 
Sbjct: 574 GYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIE 633

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P +EH+AC+VD+L R G + +AY  I+ MP+ P+  IWG+L+  C ++ ++ +    A+ 
Sbjct: 634 PTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEK 693

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           +F L P  +GYYVL++NIYA+A +W +VKR+RK +  +G++K PG S +E+  +V I 
Sbjct: 694 VFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIF 751



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 222/450 (49%), Gaps = 37/450 (8%)

Query: 7   LCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLK--KLHAQIIINQHLHSNP 64
            C   +    V+ L +S ++ +     C+ +L    D K+LK  K     I       + 
Sbjct: 71  FCESGNLKNAVKLLHVSGKWDIDPRTLCS-VLQLCADSKSLKDGKEVDNFIRGNGFVLDS 129

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
           ++G KL   Y  CG + +   VFD++  +  +F+N+L+     +  +  ++ ++K M   
Sbjct: 130 NLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSS 189

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G + D YT+ CV K+ S   S+  G Q+H  ++K G       GN LVA Y K   +  A
Sbjct: 190 GVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSA 249

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           R+V ++M  +DV++WNS++ GY  NG  ++ L V  +M    I+ D  T+ S+     ++
Sbjct: 250 RKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADS 309

Query: 245 ------------------SPENVL---------------SVKEMFLKLDNKNLVSWNVMI 271
                             S E+                 S K +F ++  +++VS+  MI
Sbjct: 310 RLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMI 369

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           A YA   +  EAV L+ +ME  GI P+  +V +VL  C     L  G+++H +++   + 
Sbjct: 370 AGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMG 429

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            ++ + NAL+DMYAKCGS+ EA  VF +MR +D++SW ++I  Y  +    +A++LF+ +
Sbjct: 430 FDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLL 489

Query: 392 LMSG-LCPDSIAFVSVLSACSHAGLLEEGR 420
           L+     PD      VL AC+     ++GR
Sbjct: 490 LVEKRFSPDERTVACVLPACASLSAFDKGR 519


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 189/570 (33%), Positives = 320/570 (56%), Gaps = 39/570 (6%)

Query: 25  QYTLLSGDACNDILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMV 81
           Q T +  D    +L +   +++L   +++HA I+    +  N  +   L+  Y  CG + 
Sbjct: 41  QGTRVYSDVFRGLLQECARLRSLEQGREVHAAIL-KSGIQPNRYLENTLLSMYAKCGSLT 99

Query: 82  DTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACS 141
           D R VFD I ++N+V +  +I ++V      +A   Y+ M + G  PD  T+  +L A +
Sbjct: 100 DARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFT 159

Query: 142 GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNS 201
               L +G ++H  +V+ GL+     G  LV MY KCG + +AR + + +P K+VVTW  
Sbjct: 160 NPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTL 219

Query: 202 MVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP--------------- 246
           ++AGYAQ G+ D AL++   M+   + P+  T AS+L   T  +                
Sbjct: 220 LIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSG 279

Query: 247 ------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
                               +   +++F  L ++++V+W  M+  YA      EA++L+ 
Sbjct: 280 YGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFR 339

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           +M+  GI+P+ ++  SVL +C   + L  G++IH+ +       ++ L++ALV MYAKCG
Sbjct: 340 RMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCG 399

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAY-GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           S+ +A  VF+QM  ++VV+WT++I+      G+  +A+  F +M   G+ PD + F SVL
Sbjct: 400 SMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVL 459

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
           SAC+H GL+EEGR +F+ M   Y + P +EH++C VDLLGRAG +EEA ++I  MP  P 
Sbjct: 460 SACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPG 519

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527
             +WG+L++AC ++S+++ G  AA+++  L P+  G YV LS+IYA AGR+ D ++VR+ 
Sbjct: 520 PSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQV 579

Query: 528 MNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           M  + + K PG S +E++ +V +  +  +S
Sbjct: 580 MEKRDVVKEPGQSWIEVDGKVHVFHVEDKS 609



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/403 (29%), Positives = 203/403 (50%), Gaps = 41/403 (10%)

Query: 113 DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV 172
           +AL +   M + G       +  +L+ C+   SL  G ++H +++K G+  N +  N L+
Sbjct: 30  EALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLL 89

Query: 173 AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
           +MY KCG L +ARRV + +  +++V+W +M+  +    +  EA      M+    KPD  
Sbjct: 90  SMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKV 149

Query: 233 TMASLLPSVTNTSPE-----------------------------------NVLSVKEMFL 257
           T  SLL + TN  PE                                   ++   + +F 
Sbjct: 150 TFVSLLNAFTN--PELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFD 207

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
           +L  KN+V+W ++IA YA       A++L   M+   + PN I+ AS+L  C   +AL  
Sbjct: 208 RLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEH 267

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           G+K+HRY+ +      L + N+L+ MY KCG L EAR +F  +  +DVV+WT+M++ Y  
Sbjct: 268 GKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQ 327

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-RYYFKIMTEQYKLVPRI 436
            G   +A+ LF +M   G+ PD + F SVL++CS    L+EG R + +++   Y L   +
Sbjct: 328 LGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYL 387

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
           +  + LV +  + G +++A  +  QM  E N   W +++  CC
Sbjct: 388 Q--SALVSMYAKCGSMDDASLVFNQMS-ERNVVAWTAIITGCC 427



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 182/400 (45%), Gaps = 40/400 (10%)

Query: 172 VAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL----RI 227
           V++  K G LKEA  ++N M  +    ++ +  G  Q      +L+  RE+ +      I
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
           +P+     +LL         ++   + +F  + ++N+VSW  MI  +   +   EA   Y
Sbjct: 79  QPNRYLENTLLSMYAKCG--SLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCY 136

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
             M++ G +P+ ++  S+L A  +   L LG+K+H  +    L+   R+  +LV MYAKC
Sbjct: 137 ETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKC 196

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           G +++AR +FD++  ++VV+WT +I+ Y   GQ   A+ L   M  + + P+ I F S+L
Sbjct: 197 GDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASIL 256

Query: 408 SACSHAGLLEEG----RYYFKI---------------------MTEQYKLVPRIEH---- 438
             C+    LE G    RY  +                      + E  KL   + H    
Sbjct: 257 QGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVV 316

Query: 439 -FACLVDLLGRAGKVEEAYDLIKQMP---MEPNERIWGSLVAACCLYSNMDIGILAADHI 494
            +  +V    + G  +EA +L ++M    ++P++  + S++ +C   + +  G      +
Sbjct: 317 TWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQL 376

Query: 495 FHLAPNQSGY-YVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
            H   N   Y    L ++YAK G   D   V   M+ + +
Sbjct: 377 VHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNV 416


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 188/513 (36%), Positives = 295/513 (57%), Gaps = 43/513 (8%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           ++DK   +  L ++HA ++  + L+ NP +  KL R+Y A G++  +  VF+     NV 
Sbjct: 53  LIDKSKSVAHLLQIHASLL-RRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVF 111

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            F+ +I S+V + L+  A   Y  M   G +P+ +T+  VLK+CS    L  G  +HC  
Sbjct: 112 SFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHCQA 167

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           +K+GL  +L+   GLV +Y + G +  AR++ + MP + +V+  +M+  Y++ G  D+A 
Sbjct: 168 IKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKA- 226

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                               + +F  +  +++V WNVMI  YA 
Sbjct: 227 ------------------------------------RSLFEGMKERDVVCWNVMIGGYAQ 250

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           + +P E++ L+ +M V    PN ++V +VL ACG L AL  GR IH Y+E K +Q N+ +
Sbjct: 251 SGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHV 310

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
             AL+DMY+KCGSL +AR VFD++R +DVV+W SMI  Y M G    A+ LF +M  +G 
Sbjct: 311 GTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGH 370

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P  I F+ +LSAC H GL+EEGR +F++M ++Y + P+IEH+ C+V+LLGRAG +EEAY
Sbjct: 371 KPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAY 430

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
            L+K M +  +  +WG+L+  C L+ N+ +G   A  +       SG YVLLSN+YA  G
Sbjct: 431 GLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATG 490

Query: 517 RWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
            W  V ++R  M   GI+K  G +S+E++++V 
Sbjct: 491 NWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVH 523


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 181/542 (33%), Positives = 313/542 (57%), Gaps = 35/542 (6%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +LH  ++++  L  +  +   L+  Y  CG + D R +FD +   ++V +N +I  YV N
Sbjct: 269 QLHG-LVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQN 327

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
               +A  ++  M      PD  T+   L   S   +L  G +IHC +++ G+  ++F  
Sbjct: 328 GFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLK 387

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           + L+ +Y KC  ++ AR++ +     D+V   +M++GY  NG  + AL++ R +   R++
Sbjct: 388 SALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMR 447

Query: 229 PDADTMASLLPSVTNTSP--------ENVLS-------------------------VKEM 255
            ++ T+AS+LP+    +          ++L                            + 
Sbjct: 448 ANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQT 507

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F+ + +K+ V WN MI   + N  P EA+DL+ QM + G + + +S+++ L AC +L AL
Sbjct: 508 FIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPAL 567

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             G++IH ++ R   + +L  E+AL+DMY+KCG+L  A  VFD M  ++ VSW S+I+AY
Sbjct: 568 HYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAY 627

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
           G  G+  D++ LF  ML  G+ PD + F++++SAC HAG ++EG +YF+ MTE+  ++ R
Sbjct: 628 GNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMAR 687

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
           +EH+AC+VDL GRAG++ EA+ +I  MP  P+  +WG+L+ AC L+ N+++  +A+ ++F
Sbjct: 688 MEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLF 747

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPL 554
            L P  SGYYVLLSN++A AG+W  V ++R  M  +G++K+PG S +++N+   +     
Sbjct: 748 DLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVAAD 807

Query: 555 RS 556
           RS
Sbjct: 808 RS 809



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 233/447 (52%), Gaps = 39/447 (8%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L++ Y   G + D R++FD + +K+ V +NV++  YV N  + +A  V+  M    
Sbjct: 184 VGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTE 243

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            +P+  T+ CVL  C+    +  G Q+H  VV  GL+ +    N L+AMY KCG L +AR
Sbjct: 244 TNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDAR 303

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           R+ + MP  D+VTWN M++GY QNG  DEA  +  EM S R+KPD+ T +S LP ++  +
Sbjct: 304 RLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGA 363

Query: 246 P---------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIA 272
                                              +V   +++F +    ++V    MI+
Sbjct: 364 TLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMIS 423

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y  N M   A++++  +    +  N++++ASVLPAC  L+AL LG+++H ++ +     
Sbjct: 424 GYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGG 483

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           +  + +A++DMYAKCG L  A   F  +  +D V W SMI++   +G+  +A+ LF +M 
Sbjct: 484 SCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMG 543

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA--CLVDLLGRAG 450
           M+G   D ++  + LSAC++   L  G+     M    +   R + FA   L+D+  + G
Sbjct: 544 MAGTKYDCVSISAALSACANLPALHYGKEIHAFMM---RGAFRSDLFAESALIDMYSKCG 600

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAA 477
            ++ A  +   M  E NE  W S++AA
Sbjct: 601 NLDLACRVFDTME-EKNEVSWNSIIAA 626



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 143/500 (28%), Positives = 241/500 (48%), Gaps = 64/500 (12%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++ HAQ+++N  +  N  +G KL+  Y  CG  +D +++F ++       +N +IR +  
Sbjct: 66  RQAHAQMLVNG-IGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTM 124

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
              +  AL  Y  M   G  PD YT+P V+KAC G NS+ +G  +H  +  +G + ++F 
Sbjct: 125 MGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFV 184

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           G+ L+  Y + GC+ +AR + + MPSKD V WN M+ GY +NG +D A  V  EM     
Sbjct: 185 GSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTET 244

Query: 228 KPDADTMASLL---------------------------PSVTNT------SPENVLSVKE 254
            P++ T A +L                             V NT         ++   + 
Sbjct: 245 NPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARR 304

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F  +   +LV+WN MI+ Y  N    EA  L+ +M    ++P++I+ +S LP   + + 
Sbjct: 305 LFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGAT 364

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           L  G++IH Y+ R  +  ++ L++AL+D+Y KC  +  AR +FDQ    D+V  T+MIS 
Sbjct: 365 LRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISG 424

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS-----------HAGLLEEGR--- 420
           Y ++G   +A+ +F  +L   +  +S+   SVL AC+           H  +L+ G    
Sbjct: 425 YVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGS 484

Query: 421 -YYFKIMTEQYKLVPRIE--H-------------FACLVDLLGRAGKVEEAYDLIKQMPM 464
            Y    + + Y    R++  H             +  ++    + GK EEA DL +QM M
Sbjct: 485 CYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGM 544

Query: 465 EPNERIWGSLVAACCLYSNM 484
              +    S+ AA    +N+
Sbjct: 545 AGTKYDCVSISAALSACANL 564



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 146/333 (43%), Gaps = 33/333 (9%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
            S+H  D        +L+ C+  + L  G Q H  ++  G+ YN   G  L+ MY  CG 
Sbjct: 37  FSIHNDDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGA 96

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL-- 238
             +A+ +   +       WN M+ G+   G+FD AL    +M      PD  T   ++  
Sbjct: 97  FLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKA 156

Query: 239 -----------------------------PSVTNTSPEN--VLSVKEMFLKLDNKNLVSW 267
                                         S+     EN  +   + +F ++ +K+ V W
Sbjct: 157 CGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLW 216

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
           NVM+  Y  N     A  ++++M      PN+++ A VL  C     +  G ++H  V  
Sbjct: 217 NVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVS 276

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
             L+ +  + N L+ MYAKCG L +AR +FD M   D+V+W  MIS Y  +G   +A  L
Sbjct: 277 SGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCL 336

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           F +M+ + + PDSI F S L   S    L +G+
Sbjct: 337 FHEMISARMKPDSITFSSFLPLLSEGATLRQGK 369



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 175/380 (46%), Gaps = 40/380 (10%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +L +   ++  K++H  II N  +  +  +   L+  Y  C  +   R +FD+ T  ++V
Sbjct: 358 LLSEGATLRQGKEIHCYIIRNG-VSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIV 416

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
               +I  YV N +  +AL +++ +       +  T   VL AC+G  +L +G ++H  +
Sbjct: 417 VCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHI 476

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           +K G   + + G+ ++ MY KCG L  A +    +  KD V WNSM+   +QNG+ +EA+
Sbjct: 477 LKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAI 536

Query: 217 DVCREMESLRIKPDADTMASLLPSVTN--------------------------------- 243
           D+ R+M     K D  ++++ L +  N                                 
Sbjct: 537 DLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMY 596

Query: 244 TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
           +   N+     +F  ++ KN VSWN +IA Y N+    ++++L+  M   GI+P+ ++  
Sbjct: 597 SKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFL 656

Query: 304 SVLPACGDLSALLLGRKIHRY---VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           +++ ACG    +  G  IH +    E   +   +     +VD++ + G L EA  + + M
Sbjct: 657 AIISACGHAGQVDEG--IHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSM 714

Query: 361 RCQ-DVVSWTSMISAYGMSG 379
               D   W +++ A  + G
Sbjct: 715 PFSPDAGVWGTLLGACRLHG 734



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 121/256 (47%), Gaps = 14/256 (5%)

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
           L  K +F +L       WN MI  +        A+  Y +M   G  P+  +   V+ AC
Sbjct: 98  LDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKAC 157

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
           G L+++ LGR +H  ++    + ++ + ++L+  Y++ G + +AR +FD+M  +D V W 
Sbjct: 158 GGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWN 217

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-RYYFKIMTE 428
            M++ Y  +G   +A  +F +M  +   P+S+ F  VLS C+   ++  G + +  +++ 
Sbjct: 218 VMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSS 277

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA----------AC 478
             ++   + +   L+ +  + G + +A  L   MP + +   W  +++          A 
Sbjct: 278 GLEMDSPVAN--TLLAMYAKCGHLFDARRLFDMMP-KTDLVTWNGMISGYVQNGFMDEAS 334

Query: 479 CLYSNMDIGILAADHI 494
           CL+  M    +  D I
Sbjct: 335 CLFHEMISARMKPDSI 350



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 3/177 (1%)

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
           LQ  +H  +  A  + S+L  C D S L  GR+ H  +    +  N  L   L+ MY  C
Sbjct: 35  LQFSIHNDDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLC 94

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           G+  +A+ +F Q+R      W  MI  + M GQ   A+  + KML  G  PD   F  V+
Sbjct: 95  GAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVI 154

Query: 408 SACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
            AC     +  GR  + KI    ++L   +   + L+      G + +A  L  +MP
Sbjct: 155 KACGGLNSVALGRVVHDKIQFMGFELDVFVG--SSLIKFYSENGCIHDARYLFDRMP 209


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 191/514 (37%), Positives = 284/514 (55%), Gaps = 44/514 (8%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACG---QMVDTRHVFDEITNK 93
           +L  +     LK+LHA ++      ++P   L L R    C         + +F  +   
Sbjct: 21  LLHNFTSPFELKQLHAHLLKT----NSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDAS 76

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
            V  +N  +RS+       DA+ ++  +      PD YT   VLKACS    +  G  +H
Sbjct: 77  EVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVH 136

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
             V K+GL  N+F  N +V +Y  CG +  AR+V + MP +DV+TWN M+A   + G   
Sbjct: 137 GYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMG--- 193

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273
                           DA+                     ++F ++  +N+ SW  MI  
Sbjct: 194 ----------------DAE------------------GAYKLFAEMPERNVRSWTSMIGG 219

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           YA      EA+DL+L+ME  G+ PN ++V +VL AC D+  L+LGR+IH +  R   + N
Sbjct: 220 YAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKN 279

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
           +R+ N L+DMY KCG L +A  +FD M  + VVSW++MI+     G+  DA+ALF+KM+ 
Sbjct: 280 IRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMIN 339

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           +G+ P+++ F+ +L ACSH G++E+GR YF  MT  Y +VPRIEH+ C+VDL  RAG ++
Sbjct: 340 TGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQ 399

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA++ I  MP+ PN  +WG+L+  C ++ N+ +   A  H+  L P   GYYV+LSNIYA
Sbjct: 400 EAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYA 459

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQV 547
           +AGRW DV RVRK M  +G+KK PG S  M + V
Sbjct: 460 EAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGV 493



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 183/394 (46%), Gaps = 56/394 (14%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC+ +LD    ++  K +H  +     L SN  +   ++  Y  CG++   R VFD++  
Sbjct: 122 ACSRLLD----VRNGKIVHGYVE-KLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQ 176

Query: 93  KNVVFFNVLI------------------------RSYVNNYLYY-------DALHVYKNM 121
           ++V+ +N++I                        RS+ +    Y       +A+ ++  M
Sbjct: 177 RDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEM 236

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              G  P+  T   VL AC+   +L++G +IH    + G + N+   N L+ MY KCGCL
Sbjct: 237 EDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCL 296

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
           ++A R+ ++M  + VV+W++M+AG A +GR ++AL +  +M +  +KP+A T   +L + 
Sbjct: 297 EDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHAC 356

Query: 242 TNTSPENVLSVKEMFLKLDNK-----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE 296
           ++     V   ++ F  +         +  +  M+ +++   +  EA +  + M    I 
Sbjct: 357 SHMGM--VEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMP---IA 411

Query: 297 PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP-NLRLENALVDMYAKCGSLTEART 355
           PN +   ++L  C     + L  +  R++   KL P N      L ++YA+ G   +   
Sbjct: 412 PNGVVWGALLGGCKVHKNIKLAEEATRHLS--KLDPLNDGYYVVLSNIYAEAGRWEDVAR 469

Query: 356 VFDQMRCQDVV---SWTSMISAYGMSGQGYDAVA 386
           V   MR + V     W+S++    + G  Y+ VA
Sbjct: 470 VRKLMRDRGVKKTPGWSSIM----VEGVVYNFVA 499


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 197/576 (34%), Positives = 317/576 (55%), Gaps = 73/576 (12%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD----TRHVFDEITNKNVVFFN 99
           +++L+ +HA++I    LH N +  L  +  +       D       VFD I   N++ +N
Sbjct: 15  LQSLRIIHAKMI-KTGLH-NTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWN 72

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            + R +  +     AL++Y  M   G  P+ YT+P +LKAC+ S +   G QIH  V+K+
Sbjct: 73  TMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKL 132

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLN------------------------------ 189
           G D +L+    L+AMY K G  ++AR+V +                              
Sbjct: 133 GCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMF 192

Query: 190 -DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP-- 246
            ++P KDVV+WN++++GYA+ G + EAL++ +EM    +KPD  TM ++L +   ++   
Sbjct: 193 DEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIE 252

Query: 247 -------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
                                            V +   +F  L  K+++SWN +I  Y 
Sbjct: 253 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYT 312

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER--KKLQPN 333
           + ++  EA+ L+ +M   G  PN +++ S+LPAC  L A+ +GR IH Y+++  K +   
Sbjct: 313 HMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNP 372

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             L  +L+DMYAKCG +  A+ VFD M  + + SW +MI  + M G+   A  +FS+M  
Sbjct: 373 SSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRK 432

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
            G+ PD I FV +LSACSH+G+L+ GR+ F+ MTE YK+ P++EH+ C++DLLG +G  +
Sbjct: 433 DGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFK 492

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA ++I  M M+P+  IW SL+ AC ++ N+++G   A ++  + P  SG YVLLSNIYA
Sbjct: 493 EAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYA 552

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
            AGRW +V + R  +N KG+KK+PG +S+E++  V 
Sbjct: 553 TAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVH 588


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 195/552 (35%), Positives = 305/552 (55%), Gaps = 45/552 (8%)

Query: 41  YPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           +  +K  ++ H++I+ +  L  N  +  KL+  Y  C     +R VFD + +KNV  +N 
Sbjct: 36  HKSLKLTRQSHSRIL-SLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNS 94

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           LI  Y  N LY +A  ++  M      PD +T   + K  S   +L  G  IH   +++G
Sbjct: 95  LINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIG 154

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR---FDEALD 217
              +    N +++MY KCG  +E+R+V ++M  ++  +WN ++AGYA +G     +E  +
Sbjct: 155 FVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWE 214

Query: 218 VCREMESLRIKPDADTMASLLP------------------SVTN---------------- 243
             ++M+   ++PDA T++SLLP                   V N                
Sbjct: 215 FVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCL 274

Query: 244 ----TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV-HGIEPN 298
               +    V+  + +F ++  +N+ SW  MI  Y  N    EA+ L+  M+V  GIEPN
Sbjct: 275 IDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPN 334

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF- 357
            +S+ SVLPAC   S LL GR+IH +  RK+L   + L NAL+DMY+KCGSL  AR VF 
Sbjct: 335 RVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFE 394

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           D   C+D +SW+SMIS YG+ G+G +A+ L+ KML +G+ PD I  V +LSACS +GL+ 
Sbjct: 395 DDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVN 454

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           EG   +  +   Y + P +E FAC+VD+LGRAG+++ A D IK MP+EP   +WG+LV+ 
Sbjct: 455 EGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSC 514

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
             ++ ++++  LA   +  L P     YV +SN+YA + RW  V  VR+ M  K ++K+P
Sbjct: 515 SIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVP 574

Query: 538 GAS-VEMNDQVQ 548
           G S + +N++  
Sbjct: 575 GCSWISINNKTH 586


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 189/588 (32%), Positives = 321/588 (54%), Gaps = 79/588 (13%)

Query: 33  ACND--ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI 90
           ACN+  +L+K  +I T+ K          + ++ ++   L+  Y  CG++     +F ++
Sbjct: 188 ACNNYSMLEKAREIHTVVKASG-------METDVAVATALITMYSKCGEISLACEIFQKM 240

Query: 91  TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGL 150
             +NVV +  +I++   +    +A  +Y+ M   G  P+  T+  +L +C+   +L  G 
Sbjct: 241 KERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGR 300

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
           +IH  + + GL+ ++   N L+ MY KC C+++AR   + M  +DV++W++M+AGYAQ+G
Sbjct: 301 RIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSG 360

Query: 211 -----RFDEALDVCREMESLRIKPDADTMASLLPS----------------VTNTSPE-- 247
                  DE   +   M    + P+  T  S+L +                ++    E  
Sbjct: 361 YQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESD 420

Query: 248 ---------------NVLSVKEMFLKLDNK------------------------------ 262
                          ++   +++F K++NK                              
Sbjct: 421 RSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMST 480

Query: 263 -NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
            N+VSWN+MIA YA +   A+  +L   M+V G +P+ +++ S+L ACG LSAL  G+ +
Sbjct: 481 RNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLV 540

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
           H    +  L+ +  +  +L+ MY+KCG +TEARTVFD++  +D V+W +M++ YG  G G
Sbjct: 541 HAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIG 600

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
            +AV LF +ML   + P+ I F +V+SAC  AGL++EGR  F+IM E +++ P  +H+ C
Sbjct: 601 PEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGC 660

Query: 442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501
           +VDLLGRAG+++EA + I++MP EP+  +W +L+ AC  + N+ +   AA HI  L P+ 
Sbjct: 661 MVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSN 720

Query: 502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           +  YV LSNIYA+AGRW D  +VRK M+ KG+KK  G +S+E++ ++ 
Sbjct: 721 ASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIH 768



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 197/403 (48%), Gaps = 44/403 (10%)

Query: 113 DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV 172
           +A+ +   +   G   +  TY C+++ C+       G  +H  + ++GL  +++ GN L+
Sbjct: 61  EAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLI 120

Query: 173 AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
             Y K G +    +V   M  +DVVTW+SM+A YA N    +A D    M+   I+P+  
Sbjct: 121 NFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRI 180

Query: 233 TMASLLPSVTNTSP----------------ENVLSVK-----------------EMFLKL 259
           T  S+L +  N S                 E  ++V                  E+F K+
Sbjct: 181 TFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKM 240

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
             +N+VSW  +I   A +    EA +LY +M   GI PNA++  S+L +C    AL  GR
Sbjct: 241 KERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGR 300

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
           +IH ++  + L+ ++ + NAL+ MY KC  + +AR  FD+M  +DV+SW++MI+ Y  SG
Sbjct: 301 RIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSG 360

Query: 380 ----QGYDAV-ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
               +  D V  L  +M   G+ P+ + F+S+L ACS  G LE+GR   +I  E  K+  
Sbjct: 361 YQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGR---QIHAEISKVGF 417

Query: 435 RIEHF--ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
             +      + ++  + G + EA  +  +M    N   W SL+
Sbjct: 418 ESDRSLQTAIFNMYAKCGSIYEAEQVFSKME-NKNVVAWASLL 459



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 145/579 (25%), Positives = 243/579 (41%), Gaps = 118/579 (20%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y   G +     VF  +T ++VV ++ +I +Y  N     A   ++ M    
Sbjct: 115 LGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDAN 174

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            +P+  T+  +LKAC+  + L    +IH  V   G++ ++     L+ MY KCG +  A 
Sbjct: 175 IEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLAC 234

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            +   M  ++VV+W +++   AQ+ + +EA ++  +M    I P+A T  SLL S     
Sbjct: 235 EIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPE 294

Query: 246 PEN---------------------------------VLSVKEMFLKLDNKNLVSWNVMIA 272
             N                                 +   +E F ++  ++++SW+ MIA
Sbjct: 295 ALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIA 354

Query: 273 VYANNS-MPAEAVDLYLQ----MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
            YA +     E++D   Q    M   G+ PN ++  S+L AC    AL  GR+IH  + +
Sbjct: 355 GYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISK 414

Query: 328 KKLQPNLRLENALVDMYAKCGS-------------------------------LTEARTV 356
              + +  L+ A+ +MYAKCGS                               LT A  V
Sbjct: 415 VGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKV 474

Query: 357 FDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL 416
           F +M  ++VVSW  MI+ Y  SG       L S M + G  PD +  +S+L AC     L
Sbjct: 475 FSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSAL 534

Query: 417 EEGRY-----------------------YFKI--MTEQYKLVPRIEH-----FACLVDLL 446
           E G+                        Y K   +TE   +  +I +     +  ++   
Sbjct: 535 ERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGY 594

Query: 447 GRAGKVEEAYDLIKQMPME---PNERIWGSLVAACCLYSNMDIG-----ILAADHIFHLA 498
           G+ G   EA DL K+M  E   PNE  + ++++AC     +  G     I+  D  F + 
Sbjct: 595 GQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQED--FRMK 652

Query: 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
           P +  Y  ++  +    GR G ++   +F     I++MP
Sbjct: 653 PGKQHYGCMVDLL----GRAGRLQEAEEF-----IQRMP 682



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/405 (25%), Positives = 206/405 (50%), Gaps = 55/405 (13%)

Query: 177 KCGCLKEARRVLNDMPSKDVV----TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
           K G LKEA ++L  +  + ++    T+  ++   A+  RF++   V ++++ L +  D  
Sbjct: 55  KAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIY 114

Query: 233 TMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
              SL+   +     +V SV+++F ++  +++V+W+ MIA YA N+ PA+A D + +M+ 
Sbjct: 115 LGNSLINFYSKFG--DVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKD 172

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
             IEPN I+  S+L AC + S L   R+IH  V+   ++ ++ +  AL+ MY+KCG ++ 
Sbjct: 173 ANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISL 232

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           A  +F +M+ ++VVSWT++I A     +  +A  L+ KML +G+ P+++ FVS+L++C+ 
Sbjct: 233 ACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNT 292

Query: 413 AGLLEEGRYYFKIMTEQY-----------------------------KLVPR-IEHFACL 442
              L  GR     ++E+                              ++  R +  ++ +
Sbjct: 293 PEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAM 352

Query: 443 VDLLGRAG-----KVEEAYDLIKQMPME---PNERIWGSLVAACCLYSNMDIGILAADHI 494
           +    ++G      ++E + L+++M  E   PN+  + S++ AC ++     G L     
Sbjct: 353 IAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVH-----GALEQGRQ 407

Query: 495 FHLAPNQSGY------YVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
            H   ++ G+         + N+YAK G   + ++V   M +K +
Sbjct: 408 IHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNV 452


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  357 bits (916), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 193/516 (37%), Positives = 293/516 (56%), Gaps = 46/516 (8%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++T +++H  +  + H   +  IG  L+  Y  C + VD R VFD +  +NVV +N LI
Sbjct: 166 DLRTGEQVHGLVARSPHA-DDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLI 224

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-L 161
             Y  N    +AL ++  M   GF PD  T   V+ AC+G  +   G Q+H  +VK   L
Sbjct: 225 TCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRL 284

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             ++   N LV MY KCG   EAR + + MPS+ VV+  S++AGYA++            
Sbjct: 285 RDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSA----------- 333

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
                                     NV   + +F ++  KN+++WNV+IA YA N    
Sbjct: 334 --------------------------NVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEE 367

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE---- 337
           EA+ L++Q++   I P   +  +VL ACG+++ L LG++ H +V ++  + +   E    
Sbjct: 368 EAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVF 427

Query: 338 --NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
             N+LVDMY K GS+ +   VF++M  +D VSW +MI  Y  +G+  DA+ LF +ML S 
Sbjct: 428 VGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSN 487

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
             PDS+  + VLSAC H+GL++EGR +F  MTE + + P  +H+ C+VDLLGRAG ++EA
Sbjct: 488 ENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEA 547

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
            +LIK MP EP+  +W SL+ AC L+ N+++G   A  +F L P  SG YVLLSN+YA+ 
Sbjct: 548 EELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEM 607

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           G+W DV RVR+ M  +G+ K PG S +E+  ++ + 
Sbjct: 608 GKWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVF 643



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 146/313 (46%), Gaps = 39/313 (12%)

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  V+K  +    F  N LV+ Y + G L+EARRV + +P ++  ++N++++ YA+ GR 
Sbjct: 40  HGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRP 99

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIA 272
           DEA                                     + +F  + + +  S+N ++A
Sbjct: 100 DEA-------------------------------------RALFEAIPDPDQCSYNAVVA 122

Query: 273 VYANNSM--PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
             A +      +A+     M       NA S AS L AC     L  G ++H  V R   
Sbjct: 123 ALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPH 182

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
             ++ +  ALVDMYAKC    +AR VFD M  ++VVSW S+I+ Y  +G   +A+ LF +
Sbjct: 183 ADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVE 242

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450
           M+ +G  PD +   SV+SAC+      EGR     M ++ +L   +     LVD+  + G
Sbjct: 243 MMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 302

Query: 451 KVEEAYDLIKQMP 463
           +  EA  +   MP
Sbjct: 303 RTWEARCIFDSMP 315



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 79/209 (37%), Gaps = 49/209 (23%)

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
            R  H  V +  +     L N LV  YA+ G L EAR VFD +  ++  S+ +++SAY  
Sbjct: 36  ARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYAR 95

Query: 378 SGQGYDAVALFSKMLMSGLCP---------------------------------DSIAFV 404
            G+  +A ALF  +     C                                  ++ +F 
Sbjct: 96  LGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFA 155

Query: 405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF------ACLVDLLGRAGKVEEAYDL 458
           S LSAC+    L  G        + + LV R  H         LVD+  +  +  +A  +
Sbjct: 156 SALSACAAEKDLRTGE-------QVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRV 208

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIG 487
              MP E N   W SL+   C   N  +G
Sbjct: 209 FDAMP-ERNVVSWNSLIT--CYEQNGPVG 234


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 187/586 (31%), Positives = 318/586 (54%), Gaps = 75/586 (12%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           ACN+    Y  ++  +K+H  I+    + ++ ++   L+  Y  CG++     VF ++T 
Sbjct: 166 ACNN----YSILEKGRKIHT-IVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTE 220

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           +NVV +  +I++   +    +A  +Y+ M   G  P+  T+  +L +C+   +L  G +I
Sbjct: 221 RNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRI 280

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG-- 210
           H  + + GL+ ++   N L+ MY KC  ++EAR + + M  +DV++W++M+AGYAQ+G  
Sbjct: 281 HSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYK 340

Query: 211 ---RFDEALDVCREMESLRIKPDADTMASLLPSVT------------------------- 242
                DE   +   M    + P+  T  S+L + T                         
Sbjct: 341 DKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRS 400

Query: 243 -NTSPEN-------VLSVKEMFLKLDNKN------------------------------- 263
             T+  N       +   +++F K+ NKN                               
Sbjct: 401 LQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRN 460

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR 323
           +VSWN+MIA YA N    +  +L   M+  G +P+ ++V ++L ACG L+ L  G+ +H 
Sbjct: 461 VVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHA 520

Query: 324 YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383
              +  L+ +  +  +L+ MY+KCG + EARTVFD+M  +D V+W +M++ YG  G G +
Sbjct: 521 EAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLE 580

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV 443
           AV LF +ML   + P+ I   +V+SACS AGL++EGR  F++M E +K+ PR +H+ C+V
Sbjct: 581 AVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMV 640

Query: 444 DLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503
           DLLGRAG+++EA + I+ MP EP+  +W +L+ AC  ++N+ +   AA HI  L P+ + 
Sbjct: 641 DLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYAS 700

Query: 504 YYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
            Y+ LSNIYA+AGRW D  +VR+ M+ +G+KK  G +S+E++ ++ 
Sbjct: 701 VYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIH 746



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 194/385 (50%), Gaps = 44/385 (11%)

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
           TY CV++ C+ +     G  +H  + ++G++ +++ GN L+  Y K   +  A +V   M
Sbjct: 58  TYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRM 117

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP----- 246
             +DVVTW+SM+A YA N    +A D    M    I+P+  T  S+L +  N S      
Sbjct: 118 TLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGR 177

Query: 247 -----------ENVLSVK-----------------EMFLKLDNKNLVSWNVMIAVYANNS 278
                      E  ++V                  E+F K+  +N+VSW  +I   A + 
Sbjct: 178 KIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHR 237

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
              EA +LY QM   GI PNA++  S+L +C    AL  GR+IH ++  + L+ ++ + N
Sbjct: 238 KLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVAN 297

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG----QGYDAV-ALFSKMLM 393
           AL+ MY KC S+ EAR +FD+M  +DV+SW++MI+ Y  SG    +  D V  L  +M  
Sbjct: 298 ALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRR 357

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGK 451
            G+ P+ + F+S+L AC+  G LE+GR   +I  E  K+   ++      + ++  + G 
Sbjct: 358 EGVFPNKVTFMSILRACTAHGALEQGR---QIHAELSKVGFELDRSLQTAIFNMYAKCGS 414

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVA 476
           + EA  +  +M    N   W S ++
Sbjct: 415 IYEAEQVFSKMA-NKNVVAWTSFLS 438



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 137/542 (25%), Positives = 239/542 (44%), Gaps = 93/542 (17%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y     +     VF  +T ++VV ++ +I +Y  N     A   ++ M+   
Sbjct: 93  LGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDAN 152

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            +P+  T+  +LKAC+  + L  G +IH  V  +G++ ++     L+ MY KCG +  A 
Sbjct: 153 IEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVAC 212

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            V + M  ++VV+W +++   AQ+ + +EA ++  +M    I P+A T  SLL S    +
Sbjct: 213 EVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSC--NT 270

Query: 246 PE-----------------------------------NVLSVKEMFLKLDNKNLVSWNVM 270
           PE                                   +V   +E+F ++  ++++SW+ M
Sbjct: 271 PEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAM 330

Query: 271 IAVYANNSMP-AEAVDLYLQ----MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           IA YA +     E++D   Q    M   G+ PN ++  S+L AC    AL  GR+IH  +
Sbjct: 331 IAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAEL 390

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS--------------- 370
            +   + +  L+ A+ +MYAKCGS+ EA  VF +M  ++VV+WTS               
Sbjct: 391 SKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAE 450

Query: 371 ----------------MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
                           MI+ Y  +G       L S M   G  PD +  +++L AC    
Sbjct: 451 KVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALA 510

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG 472
            LE G+    +  E  KL    +      L+ +  + G+V EA  +  +M    +   W 
Sbjct: 511 GLERGKL---VHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMS-NRDTVAWN 566

Query: 473 SLVAACCLYSNMDIGILAADHIF------HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526
           +++A    Y     G+ A D +F       ++PN+    + L+ + +   R G V+  R+
Sbjct: 567 AMLAG---YGQHGDGLEAVD-LFKRMLKERVSPNE----ITLTAVISACSRAGLVQEGRE 618

Query: 527 FM 528
             
Sbjct: 619 IF 620



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 173/305 (56%), Gaps = 8/305 (2%)

Query: 177 KCGCLKEARRVLNDMPSKDVV----TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
           K G L+EA ++L  +  + ++    T+  ++   A+  RF++   V ++++ L ++ D  
Sbjct: 33  KAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIY 92

Query: 233 TMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
              SL+   +    E+V S +++F ++  +++V+W+ MIA YA N+ PA+A D + +M  
Sbjct: 93  LGNSLINFYSKF--EDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTD 150

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
             IEPN I+  S+L AC + S L  GRKIH  V+   ++ ++ +  AL+ MY+KCG ++ 
Sbjct: 151 ANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISV 210

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           A  VF +M  ++VVSWT++I A     +  +A  L+ +ML +G+ P+++ FVS+L++C+ 
Sbjct: 211 ACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNT 270

Query: 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG 472
              L  GR     ++E+      I   A L+ +  +   V+EA ++  +M  + +   W 
Sbjct: 271 PEALNRGRRIHSHISERGLETDMIVANA-LITMYCKCNSVQEAREIFDRMS-KRDVISWS 328

Query: 473 SLVAA 477
           +++A 
Sbjct: 329 AMIAG 333


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 183/527 (34%), Positives = 309/527 (58%), Gaps = 36/527 (6%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L++ Y   G + D R++FD + +K+ V +NV++  YV N  + +A  V+  M    
Sbjct: 184 VGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTE 243

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL--DYNLFNGNGLVAMYGKCGCLKE 183
            +P+  T+ CVL  C+    +  G Q+H  VV  GL  D  + N   L+ +Y KC  ++ 
Sbjct: 244 TNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEM 303

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           AR++ +     D+V   +M++GY  NG  + AL++ R +   R++ ++ T+AS+LP+   
Sbjct: 304 ARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAG 363

Query: 244 TSP--------ENVLS-------------------------VKEMFLKLDNKNLVSWNVM 270
            +          ++L                            + F+ + +K+ V WN M
Sbjct: 364 LAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSM 423

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
           I   + N  P EA+DL+ QM + G + + +S+++ L AC +L AL  G++IH ++ R   
Sbjct: 424 ITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAF 483

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
           + +L  E+AL+DMY+KCG+L  A  VFD M  ++ VSW S+I+AYG  G+  D++ LF  
Sbjct: 484 RSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHG 543

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450
           ML  G+ PD + F++++SAC HAG ++EG +YF+ MTE+  ++ R+EH+AC+VDL GRAG
Sbjct: 544 MLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAG 603

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSN 510
           ++ EA+ +I  MP  P+  +WG+L+ AC L+ N+++  +A+ ++F L P  SGYYVLLSN
Sbjct: 604 RLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSN 663

Query: 511 IYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           ++A AG+W  V ++R  M  +G++K+PG S +++N+   +     RS
Sbjct: 664 VHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVAADRS 710



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 139/467 (29%), Positives = 239/467 (51%), Gaps = 42/467 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++ HAQ+++N  +  N  +G KL+  Y  CG  +D +++F ++       +N +IR +  
Sbjct: 66  RQAHAQMLVNG-IGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTM 124

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
              +  AL  Y  M   G  PD YT+P V+KAC G NS+ +G  +H  +  +G + ++F 
Sbjct: 125 MGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFV 184

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           G+ L+  Y + GC+ +AR + + MPSKD V WN M+ GY +NG +D A  V  EM     
Sbjct: 185 GSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTET 244

Query: 228 KPDADTMASLLPSVTNT---------------------SP-ENVLSVKEMFLK------- 258
            P++ T A +L    +                      SP  N  ++ +++ K       
Sbjct: 245 NPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMA 304

Query: 259 ---LDNK---NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
               D +   ++V    MI+ Y  N M   A++++  +    +  N++++ASVLPAC  L
Sbjct: 305 RKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGL 364

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
           +AL LG+++H ++ +     +  + +A++DMYAKCG L  A   F  +  +D V W SMI
Sbjct: 365 AALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMI 424

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           ++   +G+  +A+ LF +M M+G   D ++  + LSAC++   L  G+   +I     + 
Sbjct: 425 TSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGK---EIHAFMMRG 481

Query: 433 VPRIEHFA--CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             R + FA   L+D+  + G ++ A  +   M  E NE  W S++AA
Sbjct: 482 AFRSDLFAESALIDMYSKCGNLDLACRVFDTME-EKNEVSWNSIIAA 527



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 178/429 (41%), Gaps = 65/429 (15%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
            S+H  D        +L+ C+  + L  G Q H  ++  G+ YN   G  L+ MY  CG 
Sbjct: 37  FSIHNDDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGA 96

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL-- 238
             +A+ +   +       WN M+ G+   G+FD AL    +M      PD  T   ++  
Sbjct: 97  FLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKA 156

Query: 239 -----------------------------PSVTNTSPEN--VLSVKEMFLKLDNKNLVSW 267
                                         S+     EN  +   + +F ++ +K+ V W
Sbjct: 157 CGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLW 216

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
           NVM+  Y  N     A  ++++M      PN+++ A VL  C     +  G ++H  V  
Sbjct: 217 NVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVS 276

Query: 328 KKLQPNLRLEN--ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
             L+ +  + N  AL+D+Y KC  +  AR +FDQ    D+V  T+MIS Y ++G   +A+
Sbjct: 277 SGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNAL 336

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACS-----------HAGLLEEGR----YYFKIMTEQY 430
            +F  +L   +  +S+   SVL AC+           H  +L+ G     Y    + + Y
Sbjct: 337 EIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMY 396

Query: 431 KLVPRIE--H-------------FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
               R++  H             +  ++    + GK EEA DL +QM M   +    S+ 
Sbjct: 397 AKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSIS 456

Query: 476 AACCLYSNM 484
           AA    +N+
Sbjct: 457 AALSACANL 465



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 1/193 (0%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LH  I+ N H  S   +G  +M  Y  CG++      F  I++K+ V +N +I S   
Sbjct: 371 KELHGHILKNGHGGS-CYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQ 429

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    +A+ +++ M + G   DC +    L AC+   +L  G +IH  +++     +LF 
Sbjct: 430 NGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFA 489

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            + L+ MY KCG L  A RV + M  K+ V+WNS++A Y  +GR  ++L++   M    I
Sbjct: 490 ESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGI 549

Query: 228 KPDADTMASLLPS 240
           +PD  T  +++ +
Sbjct: 550 QPDHVTFLAIISA 562



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 3/177 (1%)

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
           LQ  +H  +  A  + S+L  C D S L  GR+ H  +    +  N  L   L+ MY  C
Sbjct: 35  LQFSIHNDDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLC 94

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           G+  +A+ +F Q+R      W  MI  + M GQ   A+  + KML  G  PD   F  V+
Sbjct: 95  GAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVI 154

Query: 408 SACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
            AC     +  GR  + KI    ++L   +   + L+      G + +A  L  +MP
Sbjct: 155 KACGGLNSVALGRVVHDKIQFMGFELDVFVG--SSLIKFYSENGCIHDARYLFDRMP 209


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 200/547 (36%), Positives = 309/547 (56%), Gaps = 43/547 (7%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
           L K  ++  +K+LHAQII  ++LH +  I  KL+     C Q      VF+++   NV  
Sbjct: 26  LPKCANLNQVKQLHAQII-RRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHL 84

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
            N LIR++  N   Y A  V+  M   G   D +TYP +LKACSG + L V   +H  + 
Sbjct: 85  CNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIE 144

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCL---------------------------------KEA 184
           K+GL  +++  N L+  Y +CG L                                 ++A
Sbjct: 145 KLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDA 204

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           RR+ ++MP +D+++WN+M+ GYA+     +A ++  +M      P+ +T++     +  +
Sbjct: 205 RRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKM------PERNTVSWSTMVMGYS 258

Query: 245 SPENVLSVKEMFLK--LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
              ++   + MF K  L  KN+V+W ++IA YA   +  EA  L  QM   G++ +A +V
Sbjct: 259 KAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAV 318

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            S+L AC +   L LG +IH  ++R  L  N  + NAL+DMYAKCG+L +A  VF+ +  
Sbjct: 319 ISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPK 378

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           +D+VSW +M+   G+ G G +A+ LFS+M   G+ PD + F++VL +C+HAGL++EG  Y
Sbjct: 379 KDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDY 438

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           F  M + Y LVP++EH+ CLVDLLGR G+++EA  +++ MPMEPN  IWG+L+ AC +++
Sbjct: 439 FYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHN 498

Query: 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA-SV 541
            +DI     D++  L P   G Y LLSNIYA A  W  V  +R  M S G++K  GA SV
Sbjct: 499 EVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSV 558

Query: 542 EMNDQVQ 548
           E+ D + 
Sbjct: 559 ELEDGIH 565


>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
 gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 188/518 (36%), Positives = 290/518 (55%), Gaps = 34/518 (6%)

Query: 57  NQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALH 116
            Q + S+ ++   +M  Y  CG++   + +F EI  +++V ++ +I ++V +    +AL 
Sbjct: 16  QQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQSGYPQEALS 75

Query: 117 VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYG 176
           ++++M   G   +       L AC+  +SL +G  +HC  VK  +D ++  G  LV+MY 
Sbjct: 76  LFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDLDISVGTALVSMYA 135

Query: 177 KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS 236
           KCG    A  + N MP KDVVTWN+M+ GYAQ G    AL++  +++   + P++ TM  
Sbjct: 136 KCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMVG 195

Query: 237 LLPS----------------VTNTSPENVLSVK----EMFLKLDN--------------K 262
           LLP+                +     E+   VK    +M+ K  +              K
Sbjct: 196 LLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEFLFHRTGCRK 255

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH 322
           + VSWNVMIA Y ++    +A   + QM++  I+PN +++ +VLPA   LSAL  G  +H
Sbjct: 256 DEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGMTLH 315

Query: 323 RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY 382
            YV R   Q    + N L+DMYAKCG L  +  +F +M+ +D VSW  M++ Y + G+G 
Sbjct: 316 AYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRGS 375

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL 442
            A+ LFS+M  S +  DS +F++VLSAC HAGL+ EGR  F  M++Q++L P +EH+AC+
Sbjct: 376 CAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGEGRKIFDSMSKQHQLEPDLEHYACM 435

Query: 443 VDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS 502
            DLLGRAG   E  DLIK MPMEP+  +WG+L+ A  ++SN+ +   A  H+  L     
Sbjct: 436 ADLLGRAGLFNEVLDLIKSMPMEPDAGVWGALLGASTMHSNVQLAEFALHHLDKLEHKNL 495

Query: 503 GYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            +Y  LSN YA++GRW DV   R  +   G++K PG S
Sbjct: 496 THYAALSNTYARSGRWADVGNTRSKITKTGLRKSPGYS 533



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 173/352 (49%), Gaps = 43/352 (12%)

Query: 149 GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
           G +IH    + G+D ++     ++ MY +CG +  A+++  ++  +D+V W++++A + Q
Sbjct: 7   GTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQ 66

Query: 209 NGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP-------------ENV---LSV 252
           +G   EAL + R M++  ++ +   + S LP+    S               NV   +SV
Sbjct: 67  SGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDLDISV 126

Query: 253 K-----------------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
                              +F ++  K++V+WN MI  YA    P  A++++ ++++  +
Sbjct: 127 GTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSEL 186

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
            PN+ ++  +LPA   L+ L  G  IH  + +   +    ++ AL+DMYAKCGSL+ A  
Sbjct: 187 NPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEF 246

Query: 356 VFDQMRC-QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
           +F +  C +D VSW  MI+ Y  SG   DA + F +M +  + P+ +  V+VL A +H  
Sbjct: 247 LFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLS 306

Query: 415 LLEEG----RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
            L  G     Y  ++  +    V       CL+D+  + G ++ +  +  +M
Sbjct: 307 ALRAGMTLHAYVIRMGFQSKTPVGN-----CLIDMYAKCGWLDHSEKIFHEM 353



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 140/300 (46%), Gaps = 12/300 (4%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI-TNKNVVFFNVLIRSYVNNYLYYD 113
           II     S   +   L+  Y  CG +     +F      K+ V +NV+I  Y+++    D
Sbjct: 216 IIKCGFESECHVKTALIDMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAID 275

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           A   +  M +    P+  T   VL A +  ++L  G+ +H  V+++G       GN L+ 
Sbjct: 276 AFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGMTLHAYVIRMGFQSKTPVGNCLID 335

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MY KCG L  + ++ ++M +KD V+WN M+AGYA +GR   A+++   M+   I+ D+ +
Sbjct: 336 MYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSFS 395

Query: 234 MASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLVSWNVMIAVYANNSMPAEAVDLYL 288
             ++L +  +     +   +++F  +  +     +L  +  M  +     +  E +DL  
Sbjct: 396 FINVLSACRHAGL--IGEGRKIFDSMSKQHQLEPDLEHYACMADLLGRAGLFNEVLDLIK 453

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
            M    +EP+A    ++L A    S + L      ++++ +   NL    AL + YA+ G
Sbjct: 454 SMP---MEPDAGVWGALLGASTMHSNVQLAEFALHHLDKLE-HKNLTHYAALSNTYARSG 509



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 66/109 (60%)

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           + AL  G +IH +  ++ +  ++ +   ++ MYA+CG +  A+ +F +++ +D+V+W+++
Sbjct: 1   MRALGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAI 60

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           I+A+  SG   +A++LF  M   GL  + +  +S L AC+    L+ G+
Sbjct: 61  IAAFVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGK 109


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 206/583 (35%), Positives = 310/583 (53%), Gaps = 50/583 (8%)

Query: 3   AVVLLCR-HFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLH 61
           AV   CR  +   +PV   V +  Y L     C D      D++  K++H Q+I+N    
Sbjct: 159 AVSFFCRMRYDGVRPV---VYNFTYLL---KVCGD----NADLRKGKEIHCQLIVNG-FA 207

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           SN      ++  Y  C  + +   +FD +  +++V +N +I  Y  N     AL +   M
Sbjct: 208 SNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRM 267

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              G  PD  T   +L A +   SL +G  IH   ++ G +  +     LV MY KCG +
Sbjct: 268 QEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSV 327

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM------------------- 222
             AR + + M  K VV+WNSM+ GY QNG    A+++ ++M                   
Sbjct: 328 GTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHAC 387

Query: 223 ----------------ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS 266
                           + L +  D   M SL+   +     ++ +  E+F  L +K LVS
Sbjct: 388 ADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAA--EIFENLQHKTLVS 445

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           WN MI  YA N    EA+D + +M++  I+P++ ++ SV+PA  +LS L   + IH  V 
Sbjct: 446 WNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVI 505

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           R  L  N+ +  ALVDMYAKCG++  AR +FD M  + V +W +MI  YG  G G  A+ 
Sbjct: 506 RTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALE 565

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           LF KM    + P+ + F+ VLSACSH+GL+EEG  YF  M + Y L P ++H+  +VDLL
Sbjct: 566 LFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLL 625

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
           GRA ++ EA+D I++MP+EP   ++G+++ AC ++ N+++G  AA+ IF L P+  GY+V
Sbjct: 626 GRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHV 685

Query: 507 LLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           LL+NIYA A  W  V RVR  M  KGI+K PG S VE+ ++V 
Sbjct: 686 LLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVH 728



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 136/505 (26%), Positives = 243/505 (48%), Gaps = 47/505 (9%)

Query: 46  TLKKLHAQI--IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++K+LH  I  II   L+S      KL+  +   G + +   VF  I +K    ++ +++
Sbjct: 89  SMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLK 148

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            Y  N    DA+  +  M   G  P  Y +  +LK C  +  L  G +IHC ++  G   
Sbjct: 149 GYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFAS 208

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           N+F   G+V MY KC  ++EA ++ + MP +D+V WN++++GYAQNG    AL++   M+
Sbjct: 209 NVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQ 268

Query: 224 SLRIKPDADTMASLLPSVTNTSP---------------------------------ENVL 250
               +PD+ T+ S+LP+V +                                     +V 
Sbjct: 269 EEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVG 328

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
           + + +F ++  K +VSWN MI  Y  N  P  A++++ +M    +E   ++V   L AC 
Sbjct: 329 TARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACA 388

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           DL  +  GR +H+ +++ +L  ++ + N+L+ MY+KC  +  A  +F+ ++ + +VSW +
Sbjct: 389 DLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNA 448

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           MI  Y  +G+  +A+  F KM +  + PDS   VSV+ A +   +L + ++   ++    
Sbjct: 449 MILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTC 508

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            L   +     LVD+  + G V  A  L   M  E +   W +++     Y    +G  A
Sbjct: 509 -LDKNVFVATALVDMYAKCGAVHTARKLFDMMD-ERHVTTWNAMIDG---YGTHGLG-KA 562

Query: 491 ADHIFH------LAPNQSGYYVLLS 509
           A  +F       + PN+  +  +LS
Sbjct: 563 ALELFEKMKKEVIKPNEVTFLCVLS 587



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 115/271 (42%), Gaps = 18/271 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +H  ++I   L  N  +   L+  Y  CG +   R +FD +  ++V  +N +I  Y  
Sbjct: 498 KWIHG-LVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGT 556

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYNLF 166
           + L   AL +++ M      P+  T+ CVL ACS S  +  G Q   S+ K  GL+  + 
Sbjct: 557 HGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMD 616

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES-- 224
           +   +V + G+   L EA   +  MP +  ++    + G     R  + +++  +  +  
Sbjct: 617 HYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGAC---RIHKNVELGEKAANRI 673

Query: 225 LRIKPDADTMASLLPSVTNTSP--ENVLSVKEMFLKLDNKNLVSWNVMI------AVYAN 276
             + PD      LL ++  T+   + V  V+    K   +    W+V+         Y+ 
Sbjct: 674 FDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSG 733

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
            +   +A  +Y  +E  G   N I  A  +P
Sbjct: 734 TTSHPQAKKIYAFLETLG---NRIKAAGYMP 761


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 193/526 (36%), Positives = 300/526 (57%), Gaps = 38/526 (7%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           LHA I    H  SN  +G  L+  Y  CG +   R  FD I  K++V +  ++  Y  N 
Sbjct: 63  LHACIYKLGH-ESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEND 121

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
            + D+L ++  M + GF+P+ +T+  VLKAC G  +  VG  +H  V+K   + +L+ G 
Sbjct: 122 RFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGV 181

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
           GL+ +Y K G   +  RV  +MP  DV+ W+ M++ YAQ+ +  EA+++  +M    + P
Sbjct: 182 GLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLP 241

Query: 230 DADTMASLLPSVTNTSPEN----------VLSVK-------------------------E 254
           +  T AS+L S    S EN          VL V                          +
Sbjct: 242 NQFTFASVLQSCA--SIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMK 299

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F++L N+N V+WN MI  Y  +    +A+ LY  M    ++ + ++ +SVL AC  L+A
Sbjct: 300 LFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAA 359

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           + LG +IH    +     ++ + NAL+DMYAKCGS+  AR VFD +  +D +SW +MIS 
Sbjct: 360 MELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISG 419

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
           Y M G   +A+  F  M  +   P+ + FVS+LSACS+AGLL+ G+ YFK M + Y + P
Sbjct: 420 YSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEP 479

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
            +EH+ C+V LLGR+G +++A  LI+++P+EPN ++W +L+ AC +++++D+GI++A  I
Sbjct: 480 CMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQI 539

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
             + P     +VLLSNIYA+  RW  V  VRKFM +KG+KK PG S
Sbjct: 540 LQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLS 585



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 204/421 (48%), Gaps = 39/421 (9%)

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
           ++N V F  LI+ YV ++   + + ++  +   G + + + +  +LK         +   
Sbjct: 3   DRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYS 62

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H  + K+G + N F G  L+  Y  CG +  AR+  + +  KD+V+W  MVA YA+N R
Sbjct: 63  LHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDR 122

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPS----------------VTNTSPENVL----- 250
           F ++L +  EM  +   P+  T A +L +                V  T  E  L     
Sbjct: 123 FQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVG 182

Query: 251 ------------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                        V  +F ++   +++ W+ MI+ YA ++   EAV+L+ QM    + PN
Sbjct: 183 LLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPN 242

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
             + ASVL +C  +  L LG+++H +V +  L  N+ + NAL+D+YAKCG L  +  +F 
Sbjct: 243 QFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFM 302

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
           ++  ++ V+W +MI  Y  SG G  A++L+  ML   +    + + SVL AC+    +E 
Sbjct: 303 ELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMEL 362

Query: 419 GRYYFKIMTEQYKLVPRIEHFA--CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
           G    +I +   K +   +      L+D+  + G ++ A  L+  M  E +E  W ++++
Sbjct: 363 GT---QIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNA-RLVFDMLSERDEISWNAMIS 418

Query: 477 A 477
            
Sbjct: 419 G 419



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 131/295 (44%), Gaps = 42/295 (14%)

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
           ++N VS+  +I  Y  +    E VDL+ ++   G E N     ++L     +    L   
Sbjct: 3   DRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYS 62

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
           +H  + +   + N  +  AL+D YA CGS+  AR  FD + C+D+VSWT M++ Y  + +
Sbjct: 63  LHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDR 122

Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSAC--------------------------SHAG 414
             D++ LF++M M G  P+   F  VL AC                             G
Sbjct: 123 FQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVG 182

Query: 415 LLE------EGRYYFKIMTE--QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME- 465
           LL+      +     ++  E  ++ ++P    ++ ++    ++ +  EA +L  QM    
Sbjct: 183 LLDLYTKFGDANDVLRVFEEMPKHDVIP----WSFMISRYAQSNQSREAVELFGQMRRAF 238

Query: 466 --PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV-LLSNIYAKAGR 517
             PN+  + S++ +C    N+ +G     H+  +  + + +    L ++YAK GR
Sbjct: 239 VLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGR 293


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 199/538 (36%), Positives = 303/538 (56%), Gaps = 36/538 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LH   I+        S+G  L+  Y    ++   R VFDE+T ++V+ +N +I  YV+
Sbjct: 215 EQLHG-FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS 273

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N L    L V+  M V G + D  T   V   C+ S  + +G  +H   VK         
Sbjct: 274 NGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRF 333

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY KCG L  A+ V  +M  + VV++ SM+AGYA+ G   EA+ +  EME   I
Sbjct: 334 CNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI 393

Query: 228 KPDADTMASLL------------PSVTNTSPENVL------------------SVKE--- 254
            PD  T+ ++L              V     EN L                  S++E   
Sbjct: 394 SPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAEL 453

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY-LQMEVHGIEPNAISVASVLPACGDLS 313
           +F ++  K+++SWN +I  Y+ N    EA+ L+ L +E     P+  +VA VLPAC  LS
Sbjct: 454 VFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLS 513

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           A   GR+IH Y+ R     +  + N+LVDMYAKCG+L  A  +FD +  +D+VSWT MI+
Sbjct: 514 AFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIA 573

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
            YGM G G +A+ALF++M  +G+  D I+FVS+L ACSH+GL++EG  +F IM  + K+ 
Sbjct: 574 GYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIE 633

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P +EH+AC+VD+L R G + +AY  I+ MP+ P+  IWG+L+  C ++ ++ +    A+ 
Sbjct: 634 PTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEK 693

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           +F L P  +GYYVL++NIYA+A +W  VKR+RK +  +G++K PG S +E+  +V I 
Sbjct: 694 VFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIF 751



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 149/534 (27%), Positives = 250/534 (46%), Gaps = 49/534 (9%)

Query: 7   LCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLK--KLHAQIIINQHLHSNP 64
            C   +    V+ L +S ++ +     C+ +L    D K+LK  K     I       + 
Sbjct: 71  FCESGNLENAVKLLCVSGKWDIDPRTLCS-VLQLCADSKSLKDGKEVDNFIRGNGFVIDS 129

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
           ++G KL   Y  CG + +   VFDE+  +  +F+N+L+     +  +  ++ ++K M   
Sbjct: 130 NLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSS 189

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G + D YT+ CV K+ S   S+  G Q+H  ++K G       GN LVA Y K   +  A
Sbjct: 190 GVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSA 249

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           R+V ++M  +DV++WNS++ GY  NG  ++ L V  +M    I+ D  T+ S+     ++
Sbjct: 250 RKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADS 309

Query: 245 ------------------SPENVL---------------SVKEMFLKLDNKNLVSWNVMI 271
                             S E+                 S K +F ++ ++++VS+  MI
Sbjct: 310 RLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMI 369

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           A YA   +  EAV L+ +ME  GI P+  +V +VL  C     L  G+++H +++   L 
Sbjct: 370 AGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLG 429

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            ++ + NAL+DMYAKCGS+ EA  VF +MR +D++SW ++I  Y  +    +A++LF+ +
Sbjct: 430 FDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLL 489

Query: 392 LMSG-LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA-CLVDLLGRA 449
           L      PD      VL AC+     ++GR     +        R  H A  LVD+  + 
Sbjct: 490 LEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR--HVANSLVDMYAKC 547

Query: 450 GKVEEAY---------DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
           G +  A+         DL+    M     + G    A  L++ M    + AD I
Sbjct: 548 GALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEI 601


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 195/533 (36%), Positives = 305/533 (57%), Gaps = 40/533 (7%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMR--TYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           +  LK++HAQ++    L  +P    K++   +    G +   R VF +I N      N +
Sbjct: 1   MSQLKQIHAQML-RTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSI 59

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           IR   +  L+ +AL  Y+ M V G  PD YT+P + K+C  S+    G QIHC   K+G 
Sbjct: 60  IRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGF 116

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC-R 220
             + +  N L+ MY  CGCL  AR+V + M  K VV+W +M+  +AQ  + +EA+ +  R
Sbjct: 117 ASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDR 176

Query: 221 EMESLRIKPDADTMASLLPS--------------------------VTNTSPENVLS--- 251
            M+S  +KP+  T+ ++L +                          V NT   +V     
Sbjct: 177 MMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCG 236

Query: 252 ----VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                +++F K   KNL SWN+MI  +  +S   EA+ L+ +M+  GI+ + +++AS+L 
Sbjct: 237 CVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLL 296

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           AC  L AL LG+ +H Y++++++  ++ L  ALVDMYAKCGS+  A  VF +M  +DV++
Sbjct: 297 ACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMT 356

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           WT++I    M GQ  +A+  F +M + G+ PD+I FV VL+ACSHAG ++EG  +F  M+
Sbjct: 357 WTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMS 416

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
           + Y + P IEH+  LVD+LGRAG++ EA +LIK MPM P++ + G L+ AC ++ N++  
Sbjct: 417 DTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAA 476

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
             AA  +  + P  SG YVLLSNIY  + +W + KR R+ M  +G++K PG S
Sbjct: 477 ERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCS 529



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 109/202 (53%), Gaps = 3/202 (1%)

Query: 43  DIKTLKKLHAQIIINQH-LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           D+  +K++H    I++H    +  +   LM  Y  CG +   R +FD+   KN+  +N++
Sbjct: 202 DLAMVKRIHE--YIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIM 259

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           I  +V +  Y +AL +++ M   G   D  T   +L AC+   +L +G  +H  + K  +
Sbjct: 260 INGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRI 319

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           D ++  G  LV MY KCG ++ A +V ++MP KDV+TW +++ G A  G+ + AL    E
Sbjct: 320 DVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDE 379

Query: 222 MESLRIKPDADTMASLLPSVTN 243
           M    +KPDA T   +L + ++
Sbjct: 380 MHIKGVKPDAITFVGVLAACSH 401


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 195/551 (35%), Positives = 315/551 (57%), Gaps = 42/551 (7%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC D  +    ++  +++H  ++      S+  +G  L+  YG CG + D   VFDE+  
Sbjct: 50  ACADAFE----VRKGREVHGSVV-KLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPE 104

Query: 93  KNVVFFNVLIRSY-VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
           K++V +N +I  + VN + Y DAL +++ M   G  P+  T    L           G +
Sbjct: 105 KDLVSWNTMIGVFSVNGWHYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGRE 164

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H S +++GL+ ++F  N L+ MY K G   EA  V   + +K+VV+WN+M+A +AQN R
Sbjct: 165 VHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQN-R 223

Query: 212 FD-EALDVCREMESLRIKPDADTMASLLPSVTNTS----------------------PEN 248
           F+  A+ + R+M+     P++ T  ++LP+                             N
Sbjct: 224 FELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSN 283

Query: 249 VLS---VKEMFLKLDN-------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
            L+    K   LKL         ++ VS+N++I  ++  S  +E++ L+ +M++ G++ +
Sbjct: 284 ALTDMYAKSGHLKLARNVFDTSLRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQD 343

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
            +S    L AC +L+A+  G++IH ++ RK    +L + N+L+D Y KCG +  AR +FD
Sbjct: 344 NVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFD 403

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
           +M  +DV SW +MI  YGM G+   A+ LF  M    +  DS++F++VLSACSH GLLE+
Sbjct: 404 RMTNKDVASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEK 463

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           GR YF  +  +  + P   H+AC+VDLLGRAG +EEA +LIK +P+ P+  IWG+L+ AC
Sbjct: 464 GRKYFDELKAR-GIEPTQMHYACMVDLLGRAGLMEEAAELIKGLPIVPDANIWGALLGAC 522

Query: 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
            +Y N+++   AA+H+F L P  SGYY LLSN+YA+ GRW +  R+R+ M S+G+KK PG
Sbjct: 523 RIYGNLELAAWAAEHLFELKPEHSGYYTLLSNMYAETGRWDEANRIRELMKSRGVKKSPG 582

Query: 539 AS-VEMNDQVQ 548
            S V++ +Q  
Sbjct: 583 CSWVQIGEQAH 593



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 133/427 (31%), Positives = 220/427 (51%), Gaps = 42/427 (9%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +N LIR Y    +    L VY  M   G  PD +T+P VLKAC+ +  +  G ++H SVV
Sbjct: 10  WNTLIRGYSIAGVG-GGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVV 68

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG-RFDEAL 216
           K+G + ++F GN L++ YG CG L++A RV ++MP KD+V+WN+M+  ++ NG  + +AL
Sbjct: 69  KLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDAL 128

Query: 217 DVCREMESLRIKPDADTMASLLPSVTN--------------------------------- 243
           D+ R M    +KP++ T++S LP +                                   
Sbjct: 129 DMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMY 188

Query: 244 TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
               +      +F KLD KN+VSWN MIA +A N     AV L  QM+ +G  PN+++  
Sbjct: 189 AKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFT 248

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           +VLPAC  +  +  G++IH          +L + NAL DMYAK G L  AR VFD    +
Sbjct: 249 NVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDT-SLR 307

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           D VS+  +I  +  +    ++++LFS+M + GL  D+++F+  LSAC++   +++G+   
Sbjct: 308 DEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIH 367

Query: 424 KIMTEQYKLVPRIEHFAC--LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
             +  +   +  I  F    L+D   + G++  A ++  +M    +   W +++    + 
Sbjct: 368 GFLLRK---LFHIHLFVANSLLDFYTKCGRIGLARNIFDRMT-NKDVASWNTMILGYGML 423

Query: 482 SNMDIGI 488
             +D  I
Sbjct: 424 GELDTAI 430



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 125/261 (47%), Gaps = 14/261 (5%)

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           WN +I  Y+   +    +++Y QM   G+ P+  +   VL AC D   +  GR++H  V 
Sbjct: 10  WNTLIRGYSIAGVGG-GLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVV 68

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY-DAV 385
           +   + ++ + N L+  Y  CG L +A  VFD+M  +D+VSW +MI  + ++G  Y DA+
Sbjct: 69  KLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDAL 128

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC--LV 443
            +F  M+  GL P+SI   S L         + GR   ++     ++    + F    L+
Sbjct: 129 DMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGR---EVHGSSIRMGLESDIFIANSLI 185

Query: 444 DLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA--ACCLYSNMDIGILAADHIFHLAPNQ 501
           D+  ++G   EA ++  ++  + N   W +++A  A   +  + +G++     +   PN 
Sbjct: 186 DMYAKSGHSTEASNVFYKLDAK-NVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNS 244

Query: 502 SGYYVLLSNIYAKAGRWGDVK 522
               V  +N+     R G V+
Sbjct: 245 ----VTFTNVLPACARMGLVR 261


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 199/538 (36%), Positives = 303/538 (56%), Gaps = 36/538 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LH   I+        S+G  L+  Y    ++   R VFDE+T ++V+ +N +I  YV+
Sbjct: 64  EQLHG-FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS 122

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N L    L V+  M V G + D  T   V   C+ S  + +G  +H   VK         
Sbjct: 123 NGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRF 182

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY KCG L  A+ V  +M  + VV++ SM+AGYA+ G   EA+ +  EME   I
Sbjct: 183 CNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI 242

Query: 228 KPDADTMASLL------------PSVTNTSPENVL------------------SVKE--- 254
            PD  T+ ++L              V     EN L                  S++E   
Sbjct: 243 SPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAEL 302

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY-LQMEVHGIEPNAISVASVLPACGDLS 313
           +F ++  K+++SWN +I  Y+ N    EA+ L+ L +E     P+  +VA VLPAC  LS
Sbjct: 303 VFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLS 362

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           A   GR+IH Y+ R     +  + N+LVDMYAKCG+L  A  +FD +  +D+VSWT MI+
Sbjct: 363 AFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIA 422

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
            YGM G G +A+ALF++M  +G+  D I+FVS+L ACSH+GL++EG  +F IM  + K+ 
Sbjct: 423 GYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIE 482

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P +EH+AC+VD+L R G + +AY  I+ MP+ P+  IWG+L+  C ++ ++ +    A+ 
Sbjct: 483 PTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEK 542

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           +F L P  +GYYVL++NIYA+A +W  VKR+RK +  +G++K PG S +E+  +V I 
Sbjct: 543 VFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIF 600



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 217/452 (48%), Gaps = 46/452 (10%)

Query: 87  FDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL 146
           FDE+  +  +F+N+L+     +  +  ++ ++K M   G + D YT+ CV K+ S   S+
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY 206
             G Q+H  ++K G       GN LVA Y K   +  AR+V ++M  +DV++WNS++ GY
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 207 AQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT------------------SPEN 248
             NG  ++ L V  +M    I+ D  T+ S+     ++                  S E+
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 249 VL---------------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
                            S K +F ++ ++++VS+  MIA YA   +  EAV L+ +ME  
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
           GI P+  +V +VL  C     L  G+++H +++   L  ++ + NAL+DMYAKCGS+ EA
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 300

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG-LCPDSIAFVSVLSACSH 412
             VF +MR +D++SW ++I  Y  +    +A++LF+ +L      PD      VL AC+ 
Sbjct: 301 ELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACAS 360

Query: 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFA-CLVDLLGRAGKVEEAY---------DLIKQM 462
               ++GR     +        R  H A  LVD+  + G +  A+         DL+   
Sbjct: 361 LSAFDKGREIHGYIMRNGYFSDR--HVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWT 418

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
            M     + G    A  L++ M    + AD I
Sbjct: 419 VMIAGYGMHGFGKEAIALFNQMRQAGIEADEI 450


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 200/591 (33%), Positives = 315/591 (53%), Gaps = 70/591 (11%)

Query: 26  YTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH 85
           Y +L       +L K   I+T K++HA II    LH N    L  +  + A  +  D  +
Sbjct: 24  YRVLQEHPSLKLLSKCQSIRTFKQIHAHII-KTGLH-NTLFALSKLIEFSAVSRSGDISY 81

Query: 86  ---VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
              +F+ I   N+  +N +IR    +     AL  +  M   G +P+ YT+P +LK+C+ 
Sbjct: 82  AISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAK 141

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG----------------------- 179
             S   G QIH  V+K+G   ++F    L+ MY + G                       
Sbjct: 142 LASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTAL 201

Query: 180 --------CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA 231
                    +  AR++ ++MP KDVV+WN+M+AGYAQ GR  EAL +  +M    + P+ 
Sbjct: 202 IAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNE 261

Query: 232 DTMASLLPSVTNTSP---------------------------------ENVLSVKEMFLK 258
            T+ S+L +   ++                                   ++ + +E+F  
Sbjct: 262 STIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDD 321

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +  ++++SWNVMI  Y +     EA+ L+ +M   G+EP  I+  S+LP+C  L A+ LG
Sbjct: 322 MLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLG 381

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           + IH Y+ +     +  L  +L+D+YAKCG++  AR VFD M+ + + SW +MI    M 
Sbjct: 382 KWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMH 441

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           GQ   A  LFSKM   G+ P+ I FV +LSAC HAGL++ G+ +F  M + YK+ P+ +H
Sbjct: 442 GQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQH 501

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
           + C++DLLGRAG  EEA  L++ M ++P+  IWGSL+ AC  +  +++G L A+ +F L 
Sbjct: 502 YGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELE 561

Query: 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           P+  G YVLLSNIYA AG+W DV R+R  +N +G+KK+PG  ++E+++ V 
Sbjct: 562 PDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVH 612



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 156/331 (47%), Gaps = 18/331 (5%)

Query: 23  STQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD 82
           ST  ++LS  A ++ LD    +++        I ++ L SN  +   L+  Y  CG +  
Sbjct: 262 STIVSVLSACAQSNALDLGNSMRSW-------IEDRGLCSNLKLVNALIDMYSKCGDLQT 314

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
            R +FD++  ++V+ +NV+I  Y +   Y +AL +++ M   G +P   T+  +L +C+ 
Sbjct: 315 ARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAH 374

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
             ++ +G  IH  + K     +      L+ +Y KCG +  AR+V + M  K + +WN+M
Sbjct: 375 LGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAM 434

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS----PENVLSVKEMFLK 258
           + G A +G+ D+A ++  +M S  I+P+  T   +L +  +       +   S      K
Sbjct: 435 ICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYK 494

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +  K+   +  MI +     +  EA  L   MEV   +P+     S+L AC D   + LG
Sbjct: 495 ISPKS-QHYGCMIDLLGRAGLFEEAESLLQNMEV---KPDGAIWGSLLGACRDHGRVELG 550

Query: 319 RKI-HRYVERKKLQPNLRLENALVDMYAKCG 348
             +  R  E +   P   +   L ++YA  G
Sbjct: 551 ELVAERLFELEPDNPGAYV--LLSNIYAGAG 579


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  354 bits (908), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 192/553 (34%), Positives = 305/553 (55%), Gaps = 41/553 (7%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
           L +   +  +K++HAQ++   +LH    +G KL+  +  C QM    +VF++I + +V+ 
Sbjct: 24  LHRCSSLNQVKQIHAQVL-KANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLL 82

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +N LIR++V N     A  V+  M   G   D +TYP +LKACSG   + V   IH  V 
Sbjct: 83  YNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVE 142

Query: 158 KVGLDYNLFNGNGLVAMYGKCGC---------------------------------LKEA 184
           K+G   ++F  N L+  Y KCG                                  L EA
Sbjct: 143 KMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEA 202

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           RR+ ++MP +D V+WN+++ GY + G  + A ++  +M +  +     + ++++   +  
Sbjct: 203 RRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVV----SWSTMVLGYSKA 258

Query: 245 SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
              ++  +  +F K+  KNLV W +MI+ YA   +  +A++LY QME  G++ +  +V S
Sbjct: 259 GDMDMARI--LFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVIS 316

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           +L AC     L LG+++H  +ER + + +  + NAL+DMYAKCGSL  A ++F  M  +D
Sbjct: 317 ILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKD 376

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
           VVSW ++I    M G G  A+ LFS+M   G  PD + FV VL AC+HAG ++EG +YF 
Sbjct: 377 VVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFH 436

Query: 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNM 484
            M   Y + P +EH+ C+VDLLGR G+++EA+ L+  MP+EPN  IWG+L+ AC ++S  
Sbjct: 437 AMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSAT 496

Query: 485 DIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK-MPGASVEM 543
            +     D +     + SG   +LSNIYA AG W +   +R  M S  I+K   G+S+E+
Sbjct: 497 GLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEV 556

Query: 544 NDQVQIIALPLRS 556
           +D+V    +  RS
Sbjct: 557 DDEVHEFTVFDRS 569


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  354 bits (908), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 184/536 (34%), Positives = 311/536 (58%), Gaps = 35/536 (6%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +LH  ++I+   H +P +   L+  Y   GQ+ D   +F+ + + NVV +N +I  +V N
Sbjct: 94  QLHG-LVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQN 152

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
               +A  ++  M   G  PD  T+   L + + S SL  G +IH  +++ G+  ++F  
Sbjct: 153 GFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLK 212

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           + L+ +Y KC  +  A ++     + D+V   ++++GY  NG  ++AL++ R +   ++ 
Sbjct: 213 SALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMS 272

Query: 229 PDADTMASLLPSVT-----NTSPE---NVLS-------------------------VKEM 255
           P+A T+AS+LP+       N   E   N+L                            ++
Sbjct: 273 PNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQI 332

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F ++  K+ V WN +I   + N  P EA+DL+ QM   G+  + +S+++ L AC +L AL
Sbjct: 333 FRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPAL 392

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             G+ IH ++ +      +  E+AL+DMY KCG+L+ AR VFD MR ++ VSW S+I+AY
Sbjct: 393 HHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAY 452

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
           G  G    ++ALF KML  G+ PD + F+++LSAC HAG +++G  YF+ MTE+Y +  R
Sbjct: 453 GSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPAR 512

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
           +EH+AC+VDL GRAG++ EA++ IK MP  P++ +WG+L+ AC ++ N+++  +A+  + 
Sbjct: 513 MEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLL 572

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            L P  SG YVLLSN++A AG+WG V+++R  M  +G++K+PG S +E+N    + 
Sbjct: 573 DLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKKRGVQKVPGYSWIEVNKTTHMF 628



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 144/485 (29%), Positives = 242/485 (49%), Gaps = 49/485 (10%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L++ Y   G + D R +FD++ NK+ V +NV++  +V       A+ V+++M    
Sbjct: 9   VGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQ 68

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             P+  T+  VL  C+       G Q+H  V+  G  ++    N LVAMY K G L +A 
Sbjct: 69  TKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDAL 128

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           ++ N MP  +VVTWN M+AG+ QNG  DEA  +  EM S  + PD+ T AS LPSVT ++
Sbjct: 129 KLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESA 188

Query: 246 P---------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIA 272
                                              +V    ++F +  N ++V    +I+
Sbjct: 189 SLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIIS 248

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y  N +  +A++++  +    + PNA+++ASVLPAC  L+ L LG+++H  + +  L  
Sbjct: 249 GYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDE 308

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
              + +A++DMYAKCG L  A  +F +M  +D V W ++I+    +G+  +A+ LF +M 
Sbjct: 309 RRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMG 368

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA--CLVDLLGRAG 450
             GL  D ++  + LSAC++   L  G+     M    K     E FA   L+D+ G+ G
Sbjct: 369 REGLSYDCVSISAALSACANLPALHHGKAIHSFMI---KGAFDSEVFAESALIDMYGKCG 425

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH------LAPNQSGY 504
            +  A  +   M  E NE  W S++AA   + ++++ +     +FH      + P+   +
Sbjct: 426 NLSVARCVFDMM-REKNEVSWNSIIAAYGSHGHLEVSLA----LFHKMLEDGIQPDHVTF 480

Query: 505 YVLLS 509
             +LS
Sbjct: 481 LTILS 485



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 186/353 (52%), Gaps = 35/353 (9%)

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
           +G + + F G+ L+ +Y + GC+++ARR+ + MP+KD V WN M+ G+ + G  + A+ V
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 219 CREMESLRIKPDADTMASLL---------------------------PSVTNT-----SP 246
             +M + + KP++ T AS+L                           P V N      S 
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSK 120

Query: 247 ENVLS-VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
              LS   ++F  + + N+V+WN MIA +  N    EA  L+ +M   G+ P++I+ AS 
Sbjct: 121 FGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASF 180

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           LP+  + ++L  G++IH Y+ R  +  ++ L++AL+D+Y KC  +  A  +F Q    D+
Sbjct: 181 LPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDI 240

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           V  T++IS Y ++G   DA+ +F  +L   + P+++   SVL AC+    L  G+     
Sbjct: 241 VVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHAN 300

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           +  ++ L  R    + ++D+  + G+++ AY + ++MP E +   W +++  C
Sbjct: 301 IL-KHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMP-EKDAVCWNAIITNC 351



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 140/299 (46%), Gaps = 34/299 (11%)

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           + +F K+ NK+ V WNVM+  +     P  AV ++  M     +PN+I+ ASVL  C   
Sbjct: 27  RRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTKPNSITFASVLSICASE 86

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
           +    G ++H  V       +  + NALV MY+K G L++A  +F+ M   +VV+W  MI
Sbjct: 87  ALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMI 146

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR------------ 420
           + +  +G   +A  LFS+M+ +G+ PDSI F S L + + +  L++G+            
Sbjct: 147 AGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIA 206

Query: 421 -----------YYFK-----IMTEQYKLVPRIEHFACLVDLLGRA--GKVEEAYDLIKQM 462
                       YFK     +  + +K    ++   C   + G    G   +A ++ + +
Sbjct: 207 LDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWL 266

Query: 463 ---PMEPNERIWGSLVAACCLYSNMDIGI-LAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
               M PN     S++ AC   + +++G  L A+ + H    +      + ++YAK GR
Sbjct: 267 LEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGR 325



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 1/193 (0%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LHA I+    L     +G  +M  Y  CG++     +F  +  K+ V +N +I +   
Sbjct: 295 KELHANIL-KHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQ 353

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    +A+ +++ M   G   DC +    L AC+   +L  G  IH  ++K   D  +F 
Sbjct: 354 NGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFA 413

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            + L+ MYGKCG L  AR V + M  K+ V+WNS++A Y  +G  + +L +  +M    I
Sbjct: 414 ESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGI 473

Query: 228 KPDADTMASLLPS 240
           +PD  T  ++L +
Sbjct: 474 QPDHVTFLTILSA 486


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 191/546 (34%), Positives = 314/546 (57%), Gaps = 36/546 (6%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           ++D     + L ++H +++I+  L  N  +  KL+      GQ+   R +FDE    +V 
Sbjct: 62  LIDNSTHKRHLDQIHNRLVISG-LQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVF 120

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +N +IRSY  N +Y D + +Y+ M   G  PD +T+P VLKAC+      +   IH  +
Sbjct: 121 MWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQI 180

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           +K G   ++F  NGLVA+Y KCG +  A+ V + +  + +V+W S+++GYAQNG+  EAL
Sbjct: 181 IKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEAL 240

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNT--------------------SPENVLSV---- 252
            +  +M +  +KPD   + S+L + T+                      P  ++S+    
Sbjct: 241 RMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFY 300

Query: 253 ---------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
                    K  F ++   N++ WN MI+ YA N    EAV+L+  M    I+P++++V 
Sbjct: 301 AKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVR 360

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           S + A   + +L L + +  YV +     ++ +  +L+DMYAKCGS+  AR VFD+   +
Sbjct: 361 SAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDK 420

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           DVV W++MI  YG+ GQG++A+ L+  M  +G+ P+ + F+ +L+AC+H+GL++EG   F
Sbjct: 421 DVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELF 480

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
             M + +++VPR EH++C+VDLLGRAG + EA   I ++P+EP   +WG+L++AC +Y  
Sbjct: 481 HCMKD-FEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRC 539

Query: 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV-E 542
           + +G  AA+ +F L P  +G+YV LSN+YA +  W  V  VR  M  KG+ K  G SV E
Sbjct: 540 VTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIE 599

Query: 543 MNDQVQ 548
           +N ++Q
Sbjct: 600 INGKLQ 605


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 189/583 (32%), Positives = 325/583 (55%), Gaps = 48/583 (8%)

Query: 11  FSTTKPVQALVLSTQYTLLSGDACND-----------ILDKYPDIKTLKKLHAQIIINQH 59
           F  T    +L L+T +   + D CN+           ++D       L +++A++++   
Sbjct: 45  FLETHYSSSLNLTTHFNN-NKDDCNESTFKPDKFYASLIDDSIHKTHLNQIYAKLLVTG- 102

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
           L     +  KL+      G++   R +FD+  + +V  +N ++R Y  +  +  A+ +Y 
Sbjct: 103 LQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYA 162

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M V    PD +++PCVLKACS   +L +G ++H  + + G + ++F  NGLVA+Y KCG
Sbjct: 163 RMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCG 222

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
            +  A  V   +  + +V+W S+++GYAQNG+  EAL +  EM    ++PD   + S+L 
Sbjct: 223 EIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLR 282

Query: 240 SVTNTSP---------------------------------ENVLSVKEMFLKLDNKNLVS 266
           + T+                                     +V+  +  F +++N +L+ 
Sbjct: 283 AYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIF 342

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           WN MI+ Y  N    EA++L+  M+   I P++I+V S + AC  + +L L R +  Y+ 
Sbjct: 343 WNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYIS 402

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
             + + ++ +  +L+D YAKCGS+  AR VFD++  +DVV W++M+  YG+ GQG +++ 
Sbjct: 403 MSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESII 462

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           LF  M  +G+ P+ + FV +L+AC ++GL+EEG   F  M + Y + PR +H+AC+VDLL
Sbjct: 463 LFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD-YGIEPRHQHYACVVDLL 521

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
           GRAG ++ AY+ +  MP+EP   +WG+L++AC ++ ++ +G  AA+ +F L P  +G+YV
Sbjct: 522 GRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYV 581

Query: 507 LLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV-EMNDQVQ 548
            LSN+YA +  W  V +VR  M  KG+ K  G SV E+N ++Q
Sbjct: 582 QLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQ 624


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  353 bits (907), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 191/539 (35%), Positives = 294/539 (54%), Gaps = 43/539 (7%)

Query: 45  KTLKKLH---AQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           KT K++H   AQII N     N  I  KL+       +M   R +FD+I + N+  +N +
Sbjct: 112 KTSKQVHQIQAQIIAN-GFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSM 170

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
            R Y  +  Y + + ++  M      P+C+T+P VLK+C   N+L+ G Q+HC ++K G 
Sbjct: 171 FRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGF 230

Query: 162 DYNLFNGNGLVAMYGKCGCLKEA-------------------------------RRVLND 190
             N F G  L+ MY   G + +A                               RR+ + 
Sbjct: 231 RGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDL 290

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL 250
            P +DVV WN MV+GY + G   EA  +  EM      P+ D M          +  NV 
Sbjct: 291 APERDVVLWNIMVSGYIEGGDMVEARKLFXEM------PNRDVMFWNTVLKGYATNGNVE 344

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPAC 309
           +++ +F ++  +N+ SWN +I  YA+N +  E +  + +M     + PN  ++ +VL AC
Sbjct: 345 ALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSAC 404

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L AL LG+ +H Y E   L+ N+ + NAL+DMYAKCG +  A +VF  M  +D++SW 
Sbjct: 405 ARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWN 464

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           ++I    M  +G DA+ LF +M  +G  PD I F+ +L AC+H GL+E+G  YF+ M + 
Sbjct: 465 TLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADD 524

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y ++P+IEH+ C+VD+L RAG++E+A   +++MP+E +  IW  L+ AC +Y N+++  L
Sbjct: 525 YLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAEL 584

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           A   +  L P     YV+LSNIY  AGRW DV R++  M   G KK+PG S +E+ND V
Sbjct: 585 ALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAV 643


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 191/539 (35%), Positives = 294/539 (54%), Gaps = 43/539 (7%)

Query: 45  KTLKKLH---AQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           KT K++H   AQII N     N  I  KL+       +M   R +FD+I + N+  +N +
Sbjct: 49  KTSKQVHQIQAQIIAN-GFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSM 107

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
            R Y  +  Y + + ++  M      P+C+T+P VLK+C   N+L+ G Q+HC ++K G 
Sbjct: 108 FRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGF 167

Query: 162 DYNLFNGNGLVAMYGKCGCLKEA-------------------------------RRVLND 190
             N F G  L+ MY   G + +A                               RR+ + 
Sbjct: 168 RGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDL 227

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL 250
            P +DVV WN MV+GY + G   EA  +  EM      P+ D M          +  NV 
Sbjct: 228 APERDVVLWNIMVSGYIEGGDMVEARKLFHEM------PNRDVMFWNTVLKGYATNGNVE 281

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPAC 309
           +++ +F ++  +N+ SWN +I  YA+N +  E +  + +M     + PN  ++ +VL AC
Sbjct: 282 ALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSAC 341

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L AL LG+ +H Y E   L+ N+ + NAL+DMYAKCG +  A +VF  M  +D++SW 
Sbjct: 342 ARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWN 401

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           ++I    M  +G DA+ LF +M  +G  PD I F+ +L AC+H GL+E+G  YF+ M + 
Sbjct: 402 TLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADD 461

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y ++P+IEH+ C+VD+L RAG++E+A   +++MP+E +  IW  L+ AC +Y N+++  L
Sbjct: 462 YLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAEL 521

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           A   +  L P     YV+LSNIY  AGRW DV R++  M   G KK+PG S +E+ND V
Sbjct: 522 ALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAV 580


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 182/525 (34%), Positives = 292/525 (55%), Gaps = 33/525 (6%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           K+  + I+   + SN  +   LM  Y  CG +++ ++VF+    ++V+ +N +I  +  +
Sbjct: 451 KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQH 510

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
             Y  A  +++ M     +PD  T+  VL  C    +L +G QIH  + + GL  ++  G
Sbjct: 511 GSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLG 570

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           N L+ MY +CG L++AR V + +  +DV++W +M+ G A  G   +A+++  +M++   +
Sbjct: 571 NALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFR 630

Query: 229 PDADTMASLLPSVT----------------------NTSPENVL-----------SVKEM 255
           P   T +S+L   T                      +T   N L             +E+
Sbjct: 631 PVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREV 690

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F K+ ++++VSWN +IA YA N +   AV+   QM+   + PN  S  S+L AC   SAL
Sbjct: 691 FDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSAL 750

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             G+++H  + ++KLQ ++R+  AL+ MYAKCGS  EA+ VFD +  ++VV+W +MI+AY
Sbjct: 751 EEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAY 810

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
              G    A+  F+ M   G+ PD   F S+LSAC+HAGL+ EG   F  M  +Y ++P 
Sbjct: 811 AQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPT 870

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
           IEH+ CLV LLGRA + +EA  LI QMP  P+  +W +L+ AC ++ N+ +   AA++  
Sbjct: 871 IEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNAL 930

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            L       Y+LLSN+YA AGRW DV ++R+ M  +GI+K PG S
Sbjct: 931 KLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRS 975



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 137/473 (28%), Positives = 238/473 (50%), Gaps = 46/473 (9%)

Query: 46  TLKKLHAQIIINQHLH-----SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           T K L A  +I+ H+      S+  IG  L+  Y  CG +   R +F  +  ++++ +N 
Sbjct: 342 TSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNA 401

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           +I  Y       +A+ +YK M   G  P   T+  +L AC+ S++   G  IH  +++ G
Sbjct: 402 IIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSG 461

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
           +  N    N L+ MY +CG L EA+ V     ++DV++WNSM+AG+AQ+G ++ A  + +
Sbjct: 462 IKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQ 521

Query: 221 EMESLRIKPDADTMASLLPSVTNTSPE--------------------------------- 247
           EM++  ++PD  T AS+L    N  PE                                 
Sbjct: 522 EMQNEELEPDNITFASVLSGCKN--PEALELGKQIHGRITESGLQLDVNLGNALINMYIR 579

Query: 248 --NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
             ++   + +F  L +++++SW  MI   A+     +A++L+ QM+  G  P   + +S+
Sbjct: 580 CGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSI 639

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L  C   + L  G+K+  Y+     + +  + NAL+  Y+K GS+T+AR VFD+M  +D+
Sbjct: 640 LKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDI 699

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-RYYFK 424
           VSW  +I+ Y  +G G  AV    +M    + P+  +FVS+L+ACS    LEEG R + +
Sbjct: 700 VSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAE 759

Query: 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           I+  + KL   +   A L+ +  + G   EA ++   + +E N   W +++ A
Sbjct: 760 IV--KRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNI-IEKNVVTWNAMINA 809



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 144/516 (27%), Positives = 256/516 (49%), Gaps = 49/516 (9%)

Query: 36  DILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           ++LD +     L   K++H ++ + + L+S+  +G  L+     CG +   +  F    +
Sbjct: 234 NLLDAFTTPSMLDEGKRIH-KLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTAD 292

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           ++VV +N LI +   +    +A   Y  M   G   +  TY  +L ACS S +L  G  I
Sbjct: 293 RDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLI 352

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  + + G   ++  GN L++MY +CG L +AR +   MP +D+++WN+++AGYA+    
Sbjct: 353 HSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDR 412

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSP--------ENVL-------------- 250
            EA+ + ++M+S  +KP   T   LL +  N+S         E++L              
Sbjct: 413 GEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANAL 472

Query: 251 -----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                        + +F     ++++SWN MIA +A +     A  L+ +M+   +EP+ 
Sbjct: 473 MNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           I+ ASVL  C +  AL LG++IH  +    LQ ++ L NAL++MY +CGSL +AR VF  
Sbjct: 533 ITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHS 592

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
           ++ +DV+SWT+MI      G+   A+ LF +M   G  P    F S+L  C+ +  L+EG
Sbjct: 593 LQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEG 652

Query: 420 RYYFK-IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           +     I+   Y+L   + +   L+    ++G + +A ++  +MP   +   W  ++A  
Sbjct: 653 KKVIAYILNSGYELDTGVGN--ALISAYSKSGSMTDAREVFDKMPSR-DIVSWNKIIAG- 708

Query: 479 CLYSNMDIGILAADHIFHL-----APNQSGYYVLLS 509
             Y+   +G  A +  + +      PN+  +  LL+
Sbjct: 709 --YAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLN 742



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/469 (28%), Positives = 228/469 (48%), Gaps = 36/469 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           +++  KK+H+QII       +P +   L+  YG CG +   R VF  I+ ++VV +N ++
Sbjct: 143 ELENGKKIHSQII-KAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTML 201

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             Y       + L ++  MS  G  PD  TY  +L A +  + L  G +IH   V+ GL+
Sbjct: 202 GLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLN 261

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++  G  LV M  +CG +  A++       +DVV +N+++A  AQ+G   EA +    M
Sbjct: 262 SDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRM 321

Query: 223 ESLRIKPDADTMASLLPSVTNTSP---------------------------------ENV 249
            S  +  +  T  S+L + + +                                    ++
Sbjct: 322 RSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDL 381

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
              +E+F  +  ++L+SWN +IA YA      EA+ LY QM+  G++P  ++   +L AC
Sbjct: 382 PKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSAC 441

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
            + SA   G+ IH  + R  ++ N  L NAL++MY +CGSL EA+ VF+  + +DV+SW 
Sbjct: 442 ANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWN 501

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           SMI+ +   G    A  LF +M    L PD+I F SVLS C +   LE G+     +TE 
Sbjct: 502 SMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITES 561

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
             L   +     L+++  R G +++A ++   +    +   W +++  C
Sbjct: 562 -GLQLDVNLGNALINMYIRCGSLQDARNVFHSL-QHRDVMSWTAMIGGC 608



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 134/470 (28%), Positives = 225/470 (47%), Gaps = 50/470 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLK--LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           K++HAQ++        P I L   L+  Y  C  ++D   VF E+  ++V+ +N LI  Y
Sbjct: 47  KRIHAQMV---EAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCY 103

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
                   A  +++ M   GF P+  TY  +L AC     L  G +IH  ++K G   + 
Sbjct: 104 AQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDP 163

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
              N L++MYGKCG L  AR+V   +  +DVV++N+M+  YAQ     E L +  +M S 
Sbjct: 164 RVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSE 223

Query: 226 RIKPDADTMASLLPSVTNTSP---------------------------------ENVLSV 252
            I PD  T  +LL + T  S                                   +V S 
Sbjct: 224 GISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSA 283

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           K+ F    ++++V +N +IA  A +    EA + Y +M   G+  N  +  S+L AC   
Sbjct: 284 KQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTS 343

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
            AL  G+ IH ++       ++++ NAL+ MYA+CG L +AR +F  M  +D++SW ++I
Sbjct: 344 KALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAII 403

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           + Y       +A+ L+ +M   G+ P  + F+ +LSAC+++    +G+     M  +  L
Sbjct: 404 AGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGK-----MIHEDIL 458

Query: 433 VPRIE---HFA-CLVDLLGRAGKVEEAYDLIKQMPMEPNERI-WGSLVAA 477
              I+   H A  L+++  R G + EA ++ +    +  + I W S++A 
Sbjct: 459 RSGIKSNGHLANALMNMYRRCGSLMEAQNVFE--GTQARDVISWNSMIAG 506



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 178/376 (47%), Gaps = 37/376 (9%)

Query: 40  KYPDIKTL-KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFF 98
           K P+   L K++H +I     L  + ++G  L+  Y  CG + D R+VF  + +++V+ +
Sbjct: 543 KNPEALELGKQIHGRIT-ESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSW 601

Query: 99  NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
             +I    +      A+ ++  M   GF P   T+  +LK C+ S  L  G ++   ++ 
Sbjct: 602 TAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILN 661

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
            G + +   GN L++ Y K G + +AR V + MPS+D+V+WN ++AGYAQNG    A++ 
Sbjct: 662 SGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEF 721

Query: 219 CREMESLRIKPDADTMASLLPSVTNTSP-------------------------------- 246
             +M+   + P+  +  SLL + ++ S                                 
Sbjct: 722 AYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAK 781

Query: 247 -ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
             +    +E+F  +  KN+V+WN MI  YA + + ++A+  +  ME  GI+P+  +  S+
Sbjct: 782 CGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSI 841

Query: 306 LPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-Q 363
           L AC     +L G +I   +E +  + P +     LV +  +     EA T+ +QM    
Sbjct: 842 LSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPP 901

Query: 364 DVVSWTSMISAYGMSG 379
           D   W +++ A  + G
Sbjct: 902 DAAVWETLLGACRIHG 917



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 176/365 (48%), Gaps = 34/365 (9%)

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
           TY  +L+ C+    L    +IH  +V+  +  ++F  N L+ MY KC  + +A +V  +M
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL------------- 238
           P +DV++WNS+++ YAQ G   +A  +  EM++    P+  T  S+L             
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 239 --------------PSVTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNS 278
                         P V N+         ++   +++F  +  +++VS+N M+ +YA  +
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKA 208

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
              E + L+ QM   GI P+ ++  ++L A    S L  G++IH+    + L  ++R+  
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGT 268

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           ALV M  +CG +  A+  F     +DVV + ++I+A    G   +A   + +M   G+  
Sbjct: 269 ALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVAL 328

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           +   ++S+L+ACS +  LE G+     ++E       ++    L+ +  R G + +A +L
Sbjct: 329 NRTTYLSILNACSTSKALEAGKLIHSHISEDGH-SSDVQIGNALISMYARCGDLPKAREL 387

Query: 459 IKQMP 463
              MP
Sbjct: 388 FYTMP 392



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 3/161 (1%)

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
           E    +  ++L  C     L   ++IH  +    + P++ L N L++MY KC S+ +A  
Sbjct: 24  ETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQ 83

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           VF +M  +DV+SW S+IS Y   G    A  LF +M  +G  P+ I ++S+L+AC     
Sbjct: 84  VFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAE 143

Query: 416 LEEG-RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           LE G + + +I+   Y+  PR+++   L+ + G+ G +  A
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRA 182


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 208/567 (36%), Positives = 323/567 (56%), Gaps = 43/567 (7%)

Query: 18  QALVLSTQYTLLSG-DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGA 76
           +A +    YT ++   AC D       IK    +HA ++ + + + N  +   L+  Y  
Sbjct: 275 KASLAPNTYTFVAALQACED----SSFIKQGMFIHATVLKSSY-YINVFVANALIAMYAR 329

Query: 77  CGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCV 136
            G+M +  ++F  + + + + +N ++  +V N LY++AL  Y  M   G  PD      +
Sbjct: 330 FGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISI 389

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDV 196
           + A + S + L G+QIH   +K GLD +L  GN LV MY K   +K    + + MP KDV
Sbjct: 390 IAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDV 449

Query: 197 VTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKE-- 254
           V+W +++AG+AQNG    AL++ RE++   I  D   ++S+L + +      + SVKE  
Sbjct: 450 VSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKL--ISSVKEIH 507

Query: 255 --------------------------------MFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                                           MF  ++ K++VSW  MI+ Y +N +  E
Sbjct: 508 SYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANE 567

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A++L+  M+  G+EP++IS+ S+L A   LSAL  G++IH ++ RK       L + LVD
Sbjct: 568 ALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVD 627

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MYA+CG+L ++R VF+ +R +D+V WTSMI+AYGM G G  A+ LF +M    + PD IA
Sbjct: 628 MYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIA 687

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           FV+VL ACSH+GL+ EGR + + M  +Y+L P  EH+ACLVDLLGRA  +EEAY  +K M
Sbjct: 688 FVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGM 747

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
            +EP   +W +L+ AC ++SN ++G +AA  +  + P   G YVL+SN+Y+   RW DV+
Sbjct: 748 EVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVE 807

Query: 523 RVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            VR  M + G+KK PG S +E+ ++V 
Sbjct: 808 XVRMRMKASGLKKNPGCSWIEVGNKVH 834



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/453 (29%), Positives = 229/453 (50%), Gaps = 45/453 (9%)

Query: 7   LCRHFSTTKPVQALV------LSTQYTLLSGDACNDILDKYPDIKTL---KKLHAQIIIN 57
           +C+  S  +  Q+L         +Q++L   +A + +L+     K L   +++HA +I +
Sbjct: 50  ICKRGSVNEAFQSLTDLFANQSPSQFSL--DEAYSSVLELCGSKKALSEGQQVHAHMITS 107

Query: 58  QHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHV 117
             L ++  +  +L+  YG CG +VD   +FD + +K +  +N +I +YV N     +L +
Sbjct: 108 NALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLEL 167

Query: 118 YKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK 177
           Y+ M V G   D  T+PC+LKAC        G ++H   +K G    +F  N +V MY K
Sbjct: 168 YREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTK 227

Query: 178 CGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS 236
           C  L  AR++ + MP K DVV+WNSM++ Y+ NG+  EAL +  EM+   + P+  T  +
Sbjct: 228 CNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVA 287

Query: 237 LLPSVTNTS----------------------PENVL-----------SVKEMFLKLDNKN 263
            L +  ++S                        N L               +F  +D+ +
Sbjct: 288 ALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWD 347

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR 323
            +SWN M++ +  N +  EA+  Y +M   G +P+ ++V S++ A       L G +IH 
Sbjct: 348 TISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHA 407

Query: 324 YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383
           Y  +  L  +L++ N+LVDMYAK  S+     +FD+M  +DVVSWT++I+ +  +G    
Sbjct: 408 YAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSR 467

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL 416
           A+ LF ++ + G+  D +   S+L ACS   L+
Sbjct: 468 ALELFREVQLEGIDLDVMMISSILLACSGLKLI 500



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 143/472 (30%), Positives = 246/472 (52%), Gaps = 53/472 (11%)

Query: 74  YGACGQMVDTRHVFDEITNK-NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYT 132
           Y  C  +   R +FD +  K +VV +N +I +Y +N    +AL ++  M      P+ YT
Sbjct: 225 YTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYT 284

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           +   L+AC  S+ +  G+ IH +V+K     N+F  N L+AMY + G + EA  +  +M 
Sbjct: 285 FVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMD 344

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT-------- 244
             D ++WNSM++G+ QNG + EAL    EM     KPD   + S++ +   +        
Sbjct: 345 DWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQ 404

Query: 245 ----SPENVL------------------SVKEM---FLKLDNKNLVSWNVMIAVYANNSM 279
               + +N L                  S+K M   F K+ +K++VSW  +IA +A N  
Sbjct: 405 IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGS 464

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
            + A++L+ ++++ GI+ + + ++S+L AC  L  +   ++IH Y+ RK L  +L L+N 
Sbjct: 465 HSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNG 523

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           +VD+Y +CG++  A  +F+ +  +DVVSWTSMIS Y  +G   +A+ LF  M  +G+ PD
Sbjct: 524 IVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPD 583

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA---Y 456
           SI+ VS+LSA +    L++G+     +  +   V      + LVD+  R G +E++   +
Sbjct: 584 SISLVSILSAAASLSALKKGKEIHGFLIRK-GFVLEGSLASTLVDMYARCGTLEKSRNVF 642

Query: 457 DLIKQMPMEPNERIWGSLV----------AACCLYSNMDIGILAADHIFHLA 498
           + I+   +     +W S++          AA  L+  M+   +A DHI  +A
Sbjct: 643 NFIRNKDL----VLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVA 690



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 119/216 (55%), Gaps = 4/216 (1%)

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           ++  +++F  + +K + +WN MI  Y  N  P  +++LY +M V GI  +A +   +L A
Sbjct: 130 LVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKA 189

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM-RCQDVVS 367
           CG L     G ++H    ++     + + N++V MY KC  L  AR +FD+M   +DVVS
Sbjct: 190 CGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVS 249

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY-YFKIM 426
           W SMISAY  +GQ  +A+ LF +M  + L P++  FV+ L AC  +  +++G + +  ++
Sbjct: 250 WNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVL 309

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
              Y +   + +   L+ +  R GK+ EA ++   M
Sbjct: 310 KSSYYINVFVAN--ALIAMYARFGKMGEAANIFYNM 343



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 95/180 (52%), Gaps = 10/180 (5%)

Query: 303 ASVLPACGDLSALLLGRKIHRY-VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           +SVL  CG   AL  G+++H + +    L  ++ L   LV MY KCG L +A  +FD M 
Sbjct: 82  SSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMP 141

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            + + +W +MI AY  +G+   ++ L+ +M +SG+  D+  F  +L AC   GLL++ RY
Sbjct: 142 HKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC---GLLKDRRY 198

Query: 422 YFKI----MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             ++    + E Y  +  + +   +V +  +   +  A  L  +MP + +   W S+++A
Sbjct: 199 GAEVHGLAIKEGYVSIVFVAN--SIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 256


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 182/532 (34%), Positives = 297/532 (55%), Gaps = 38/532 (7%)

Query: 55   IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
            +I  +   +P +   L+  Y   G + D + VFD++ +K V   N +I +++ N   YDA
Sbjct: 675  VIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDA 734

Query: 115  LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
            L +Y  M       D +T   +L  CS   S   G  +H  V+K  +  N+   + L+ M
Sbjct: 735  LGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTM 794

Query: 175  YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
            Y KCG  ++A  V   M  +DVV W SM+AG+ QN RF +ALD+ R ME   +K D+D M
Sbjct: 795  YYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVM 854

Query: 235  ASLLPSVTNTSPENVL-----------------------------------SVKEMFLKL 259
             S++ +      ENV                                    S + +F  +
Sbjct: 855  TSVISA--GLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSM 912

Query: 260  DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
             NKNLV+WN MI+ Y+ N +P  +++L  Q+  HG   +++S+ +VL A   ++ALL G+
Sbjct: 913  PNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGK 972

Query: 320  KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
             +H Y  R ++  +L++ENAL+DMY KCG L  A+ +F+ M  +++V+W SMI+ YG  G
Sbjct: 973  TLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHG 1032

Query: 380  QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
               +AV LF +M  S   PD + F++++++CSH+G++EEG   F++M  +Y + PR+EH+
Sbjct: 1033 NCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHY 1092

Query: 440  ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
            A +VDLLGRAG++++AY  I+ MP++ +  +W  L+ AC  + NM++G L AD++  + P
Sbjct: 1093 ASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEP 1152

Query: 500  NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
             +   YV L N+Y +   W     +R  M  +G+KK PG S +E+ ++V + 
Sbjct: 1153 ARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKNRVDVF 1204



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 236/497 (47%), Gaps = 51/497 (10%)

Query: 48   KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFFNVLIRSYV 106
            +++H  II N     +P +   L+  Y +C + ++   +F ++ N+ N+V +NV+I  +V
Sbjct: 567  RQIHGYIIRNM-FEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFV 625

Query: 107  NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
             N ++  +L +Y             ++     ACS    L  G Q+HC V+K+    + +
Sbjct: 626  ENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPY 685

Query: 167  NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
                L+ MY K G +++A++V + +  K+V   N+M++ +  NGR  +AL +  +M++  
Sbjct: 686  VCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGE 745

Query: 227  IKPDADTMASLLPSV----------------------TNTSPENVL-----------SVK 253
               D+ T++SLL                         +N + ++ L              
Sbjct: 746  TPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDAD 805

Query: 254  EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
             +F  +  +++V+W  MIA +  N    +A+DL+  ME  G++ ++  + SV+ A   L 
Sbjct: 806  SVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLE 865

Query: 314  ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
             + LG  IH +  ++ L+ ++ +  +LVDMY+K G    A  VF  M  +++V+W SMIS
Sbjct: 866  NVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMIS 925

Query: 374  AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR--YYFKIMTEQYK 431
             Y  +G    ++ L  ++L  G   DS++  +VL A S    L +G+  + ++I   + +
Sbjct: 926  CYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQI---RLQ 982

Query: 432  LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA----------ACCLY 481
            +   ++    L+D+  + G ++ A  + + MP   N   W S++A          A  L+
Sbjct: 983  IPSDLQVENALIDMYVKCGCLKYAQLIFENMPRR-NLVTWNSMIAGYGSHGNCEEAVRLF 1041

Query: 482  SNMDIGILAADHIFHLA 498
              M     A D +  LA
Sbjct: 1042 KEMKRSETAPDEVTFLA 1058



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 197/418 (47%), Gaps = 43/418 (10%)

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           I++ V    Y  AL ++            +T+P +LK C+  ++L  G  IH S+V +GL
Sbjct: 413 IKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGL 472

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMP-----SKDVVTWNSMVAGYAQNGRFDEAL 216
             + +    L+ MY KCG L  A +V + M      + D+  WN ++ GY + G F+E L
Sbjct: 473 QSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGL 532

Query: 217 -DVCREMESLRIKPDADTMASLL---------------------------PSVTN----- 243
              CR M+ L I+PD  +++ +L                           P +       
Sbjct: 533 AQFCR-MQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGM 591

Query: 244 -TSPENVLSVKEMFLKLDNK-NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAIS 301
            +S    +    +F KL+N+ N+V+WNVMI  +  N M  ++++LY   +    +  + S
Sbjct: 592 YSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSAS 651

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
                 AC     L  GR++H  V +   Q +  +  +L+ MYAK GS+ +A+ VFDQ+ 
Sbjct: 652 FTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVL 711

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            ++V    +MISA+  +G+ YDA+ L++KM       DS    S+LS CS  G  + GR 
Sbjct: 712 DKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRT 771

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
               + ++  +   +   + L+ +  + G  E+A  +   M  E +   WGS++A  C
Sbjct: 772 VHAEVIKR-SMQSNVAIQSALLTMYYKCGSTEDADSVFYTMK-ERDVVAWGSMIAGFC 827



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/475 (25%), Positives = 214/475 (45%), Gaps = 56/475 (11%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-----NVVFFNVLI 102
           + +HA I+    L S+P I   L+  Y  CG +     VFD+++       ++  +N +I
Sbjct: 461 RTIHASIV-TMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVI 519

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             Y     + + L  +  M   G  PD Y+   VL  C+  +  + G QIH  +++    
Sbjct: 520 DGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIR---- 575

Query: 163 YNLFNGN-----GLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFD--- 213
            N+F G+      L+ MY  C    EA  +   + ++ ++V WN M+ G+ +NG ++   
Sbjct: 576 -NMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSL 634

Query: 214 ----------------------------EALDVCREME----SLRIKPDADTMASLLPSV 241
                                       E LD  R++      +  + D     SLL   
Sbjct: 635 ELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMY 694

Query: 242 TNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAIS 301
             +   +V   K++F ++ +K +   N MI+ +  N    +A+ LY +M+      ++ +
Sbjct: 695 AKSG--SVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFT 752

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           ++S+L  C  + +   GR +H  V ++ +Q N+ +++AL+ MY KCGS  +A +VF  M+
Sbjct: 753 ISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMK 812

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            +DVV+W SMI+ +  + +  DA+ LF  M   G+  DS    SV+SA      +E G  
Sbjct: 813 ERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHL 872

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
                 ++  L   +     LVD+  + G  E A  +   MP   N   W S+++
Sbjct: 873 IHGFAIKR-GLESDVFVACSLVDMYSKFGFAESAEMVFSSMP-NKNLVAWNSMIS 925



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 179/379 (47%), Gaps = 44/379 (11%)

Query: 16   PVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG 75
            PV +  +S+   LLSG  C+ ++  Y   +T+   HA++I  + + SN +I   L+  Y 
Sbjct: 747  PVDSFTISS---LLSG--CS-VVGSYDFGRTV---HAEVI-KRSMQSNVAIQSALLTMYY 796

Query: 76   ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC 135
             CG   D   VF  +  ++VV +  +I  +  N  + DAL +++ M   G   D      
Sbjct: 797  KCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTS 856

Query: 136  VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
            V+ A  G  ++ +G  IH   +K GL+ ++F    LV MY K G  + A  V + MP+K+
Sbjct: 857  VISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKN 916

Query: 196  VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP--------- 246
            +V WNSM++ Y+ NG  + ++++  ++       D+ ++ ++L +V++ +          
Sbjct: 917  LVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHA 976

Query: 247  -------------ENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                         EN L             + +F  +  +NLV+WN MIA Y ++    E
Sbjct: 977  YQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEE 1036

Query: 283  AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE-RKKLQPNLRLENALV 341
            AV L+ +M+     P+ ++  +++ +C     +  G  + + +     ++P +    ++V
Sbjct: 1037 AVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVV 1096

Query: 342  DMYAKCGSLTEARTVFDQM 360
            D+  + G L +A +    M
Sbjct: 1097 DLLGRAGRLDDAYSFIRGM 1115



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 11/237 (4%)

Query: 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
           +N L+ K+  L+L N   V     I         ++A++L+ +     +     +  S+L
Sbjct: 392 DNELTPKKAVLELMNLPQVE---EIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLL 448

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM-----R 361
             C  LS L  GR IH  +    LQ +  +  +L++MY KCG L  A  VFD+M      
Sbjct: 449 KTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDS 508

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
             D+  W  +I  Y   G   + +A F +M   G+ PD  +   VL  C+       GR 
Sbjct: 509 APDITVWNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQ 568

Query: 422 -YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            +  I+   ++  P +E    L+ +     +  EA+ L  ++    N   W  ++  
Sbjct: 569 IHGYIIRNMFEGDPYLE--TALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGG 623


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 183/512 (35%), Positives = 291/512 (56%), Gaps = 33/512 (6%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           SN  IG  L+  Y   G +   R VFDEI++K++V +  +I SY  N  + +AL  +  M
Sbjct: 79  SNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQM 138

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
            V GF P+ +T+  VLKAC G  +   G  +HCSV+K   + +L+ G GL+ +Y +CG  
Sbjct: 139 RVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDN 198

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
            +A R   DMP  DV+ W+ M++ +AQ+G+ ++AL++  +M    + P+  T +S+L + 
Sbjct: 199 DDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQAS 258

Query: 242 ----------------------TNTSPENVL-----------SVKEMFLKLDNKNLVSWN 268
                                 T+    N L              E+F  L ++N VSWN
Sbjct: 259 ADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWN 318

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
            +I  Y        A+ L+  M  + ++   ++ +S+L AC  L+AL LG ++H    + 
Sbjct: 319 TIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKT 378

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
               ++ + NAL+DMYAKCGS+ +AR +FD +  +D VSW ++I  Y M G G +A+ +F
Sbjct: 379 IYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMF 438

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
           + M  +   PD + FV VLSACS+ G L+EG+ YF  M + Y + P +EH+ C+V L+GR
Sbjct: 439 NLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGR 498

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508
           +G +++A   I+ +P EP+  IW +L+ AC +++++++G ++A  +  L P     +VLL
Sbjct: 499 SGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLL 558

Query: 509 SNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           SNIYA+A RWG+V  VRK M  KG+KK PG S
Sbjct: 559 SNIYARARRWGNVAYVRKHMKRKGVKKEPGLS 590



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 211/438 (48%), Gaps = 38/438 (8%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VFDE+  +N V F  LI  Y  +  + +A  ++  +   G + + + +  VLK       
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
             +G  +H  V+KVG   N F G  L+  Y   GC+  AR V +++ SKD+V+W  M+A 
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLP----------------SVTNTSPENV 249
           YA+N  F EAL+   +M     KP+  T A +L                 SV  T+ E  
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 250 LSVKEMFLKL-----DN------------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
           L V    L+L     DN             +++ W+ MI+ +A +    +A++++ QM  
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
             + PN  + +SVL A  D+ +L L + IH +  +  L  ++ + NAL+  YAKCG + +
Sbjct: 242 AFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQ 301

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           +  +F+ +  ++ VSW ++I +Y   G G  A++LFS ML   +    + + S+L AC+ 
Sbjct: 302 SMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACAT 361

Query: 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG 472
              LE G      +T +      +     L+D+  + G +++A  +   + +  ++  W 
Sbjct: 362 LAALELG-LQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLR-DKVSWN 419

Query: 473 SLVAACCLYSNMDIGILA 490
           +++   C YS   +G+ A
Sbjct: 420 AII---CGYSMHGLGVEA 434


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 191/544 (35%), Positives = 309/544 (56%), Gaps = 40/544 (7%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC D L   P++  L  +HA+ +++    S+  +   LM  Y  CG+M   R VFD +  
Sbjct: 132 ACGDYL--LPEMGAL--IHARTVMSG-FDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRE 186

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           + +V +N +I  Y  N    +AL V+  M   G +PDC T   VL  CS    L VG ++
Sbjct: 187 RTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRV 246

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  V    L  ++   N L+ MY KCG + EA+ +  +M  +DVV+W +M+ GY  NG  
Sbjct: 247 HALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDA 306

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTN----------------TSPENVLSVK--- 253
             AL +C+ M+   +KP+  T+AS+L +  +                   E+ + V+   
Sbjct: 307 RSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETAL 366

Query: 254 -EMFLKLDNKNL-------------VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
            +M+ K +N NL               WN +I+   +N +  +A++L+ QM +  ++PN 
Sbjct: 367 IDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPND 426

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
            ++ S+LPA   L+ L   R +H Y+ R      + +   L+D+Y+KCGSL  A  +F+ 
Sbjct: 427 ATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNG 486

Query: 360 M--RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           +  + +D+++W+++I+ YGM G G  A++LF +M+ SG+ P+ I F S+L ACSHAGL++
Sbjct: 487 IPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVD 546

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           EG   FK M E  ++  R +H+ C++DLLGRAG++EEAY+LI+ M   PN  +WG+L+ +
Sbjct: 547 EGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGS 606

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
           C ++ N+++G +AA  +F L P  +G YVLL+NIY+  GRW D + VR  MN+ G++K P
Sbjct: 607 CVIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTP 666

Query: 538 GASV 541
             S+
Sbjct: 667 AHSL 670



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 154/504 (30%), Positives = 246/504 (48%), Gaps = 40/504 (7%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGL--KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           I   K++HA  I    L S  S  L   L   Y   G     R +FDE+ N ++  +N +
Sbjct: 34  IPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFDELRNPSLFSWNAM 93

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFD-PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           IR Y N+ L YDAL ++  M   G   PD YTYP V+KAC       +G  IH   V  G
Sbjct: 94  IRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSG 153

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
            D + F  N L+AMY  CG ++ ARRV + M  + +V+WN+M+ GY +NG   EAL V  
Sbjct: 154 FDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFD 213

Query: 221 EMESLRIKPDADTMASLLP---------------------------SVTNTSPE------ 247
            M    I+PD  T+ S+LP                           SV N+  +      
Sbjct: 214 WMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCG 273

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
           N+   + +F ++D +++VSW  M+  Y  N     A+ L   M+   ++PN +++ASVL 
Sbjct: 274 NMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLS 333

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           AC  L +L  GR +H +  R+KL+  + +E AL+DMYAKC ++  +  VF +   Q    
Sbjct: 334 ACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAP 393

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W ++IS    +G    A+ LF +MLM  + P+     S+L A +    L++ R     + 
Sbjct: 394 WNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLI 453

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI-WGSLVAACCLYSNMDI 486
                + RIE    L+D+  + G +E A+++   +P +  + I W +++A   ++ + + 
Sbjct: 454 RS-GFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGET 512

Query: 487 GILAADHIFH--LAPNQSGYYVLL 508
            I   D +    + PN+  +  +L
Sbjct: 513 AISLFDQMVQSGVKPNEITFTSIL 536



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 184/383 (48%), Gaps = 39/383 (10%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGL---DYNLFNGNGLVAMYGKCGCLKEARRVLN 189
           Y  +L+ C+   S+    QIH   + +GL    Y+    + L A Y   GC   AR++ +
Sbjct: 21  YQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFD 80

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPDADT--------------- 233
           ++ +  + +WN+M+  Y  +G   +AL +  +M  S R  PD  T               
Sbjct: 81  ELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPE 140

Query: 234 MASLLPSVTNTSP-------ENVLS-----------VKEMFLKLDNKNLVSWNVMIAVYA 275
           M +L+ + T  S        +N L             + +F  +  + LVSWN MI  Y 
Sbjct: 141 MGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYF 200

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            N    EA+ ++  M   GIEP+  +V SVLP C  L  L +GR++H  VE K L  ++ 
Sbjct: 201 KNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDIS 260

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           + N+L+DMYAKCG++ EA+ +F +M  +DVVSWT+M++ Y ++G    A+ L   M    
Sbjct: 261 VWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFES 320

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + P+ +   SVLSAC+    L+ GR        Q KL   +     L+D+  +   V  +
Sbjct: 321 VKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQ-KLESEVIVETALIDMYAKCNNVNLS 379

Query: 456 YDLIKQMPMEPNERIWGSLVAAC 478
           + +  +   +     W ++++ C
Sbjct: 380 FRVFSKTSKQRTAP-WNAIISGC 401


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 208/567 (36%), Positives = 322/567 (56%), Gaps = 43/567 (7%)

Query: 18  QALVLSTQYTLLSG-DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGA 76
           +A +    YT ++   AC D       IK    +HA ++ + + + N  +   L+  Y  
Sbjct: 311 KASLAPNTYTFVAALQACED----SSFIKQGMFIHATVLKSSY-YINVFVANALIAMYAR 365

Query: 77  CGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCV 136
            G+M +  ++F  + + + + +N ++  +V N LY++AL  Y  M   G  PD      +
Sbjct: 366 FGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISI 425

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDV 196
           + A + S + L G+QIH   +K GLD +L  GN LV MY K   +K    + + MP KDV
Sbjct: 426 IAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDV 485

Query: 197 VTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKE-- 254
           V+W +++AG+AQNG    AL++ RE++   I  D   ++S+L + +      + SVKE  
Sbjct: 486 VSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKL--ISSVKEIH 543

Query: 255 --------------------------------MFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                                           MF  ++ K++VSW  MI+ Y +N +  E
Sbjct: 544 SYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANE 603

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A++L+  M+  G+EP++IS+ S+L A   LSAL  G++IH ++ RK       L + LVD
Sbjct: 604 ALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVD 663

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MYA+CG+L ++R VF+ +R +D+V WTSMI+AYGM G G  A+ LF +M    + PD IA
Sbjct: 664 MYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIA 723

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           FV+VL ACSH+GL+ EGR + + M  +Y+L P  EH+ CLVDLLGRA  +EEAY  +K M
Sbjct: 724 FVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGM 783

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
            +EP   +W +L+ AC ++SN ++G +AA  +  + P   G YVL+SN+YA   RW DV+
Sbjct: 784 EVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVE 843

Query: 523 RVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            VR  M + G+KK PG S +E+ ++V 
Sbjct: 844 EVRMRMKASGLKKNPGCSWIEVGNKVH 870



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 134/453 (29%), Positives = 229/453 (50%), Gaps = 45/453 (9%)

Query: 7   LCRHFSTTKPVQALV------LSTQYTLLSGDACNDILDKYPDIKTL---KKLHAQIIIN 57
           +C+  S  +  Q+L         +Q++L   +A + +L+     K L   +++HA +I +
Sbjct: 86  ICKRGSVNEAFQSLTDLFANQSPSQFSL--DEAYSSVLELCGSKKALSEGQQVHAHMITS 143

Query: 58  QHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHV 117
             L ++  +  +L+  YG CG +VD   +FD + +K +  +N +I +YV N     +L +
Sbjct: 144 NALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLEL 203

Query: 118 YKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK 177
           Y+ M V G   D  T+PC+LKAC        G ++H   +K G    +F  N +V MY K
Sbjct: 204 YREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTK 263

Query: 178 CGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS 236
           C  L  AR++ + MP K DVV+WNSM++ Y+ NG+  EAL +  EM+   + P+  T  +
Sbjct: 264 CNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVA 323

Query: 237 LLPSVTNTS----------------------PENVL-----------SVKEMFLKLDNKN 263
            L +  ++S                        N L               +F  +D+ +
Sbjct: 324 ALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWD 383

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR 323
            +SWN M++ +  N +  EA+  Y +M   G +P+ ++V S++ A       L G +IH 
Sbjct: 384 TISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHA 443

Query: 324 YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383
           Y  +  L  +L++ N+LVDMYAK  S+     +FD+M  +DVVSWT++I+ +  +G    
Sbjct: 444 YAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSR 503

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL 416
           A+ LF ++ + G+  D +   S+L ACS   L+
Sbjct: 504 ALELFREVQLEGIDLDVMMISSILLACSGLKLI 536



 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 143/472 (30%), Positives = 246/472 (52%), Gaps = 53/472 (11%)

Query: 74  YGACGQMVDTRHVFDEITNK-NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYT 132
           Y  C  +   R +FD +  K +VV +N +I +Y +N    +AL ++  M      P+ YT
Sbjct: 261 YTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYT 320

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           +   L+AC  S+ +  G+ IH +V+K     N+F  N L+AMY + G + EA  +  +M 
Sbjct: 321 FVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMD 380

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT-------- 244
             D ++WNSM++G+ QNG + EAL    EM     KPD   + S++ +   +        
Sbjct: 381 DWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQ 440

Query: 245 ----SPENVL------------------SVKEM---FLKLDNKNLVSWNVMIAVYANNSM 279
               + +N L                  S+K M   F K+ +K++VSW  +IA +A N  
Sbjct: 441 IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGS 500

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
            + A++L+ ++++ GI+ + + ++S+L AC  L  +   ++IH Y+ RK L  +L L+N 
Sbjct: 501 HSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNG 559

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           +VD+Y +CG++  A  +F+ +  +DVVSWTSMIS Y  +G   +A+ LF  M  +G+ PD
Sbjct: 560 IVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPD 619

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA---Y 456
           SI+ VS+LSA +    L++G+     +  +   V      + LVD+  R G +E++   +
Sbjct: 620 SISLVSILSAAASLSALKKGKEIHGFLIRK-GFVLEGSLASTLVDMYARCGTLEKSRNVF 678

Query: 457 DLIKQMPMEPNERIWGSLV----------AACCLYSNMDIGILAADHIFHLA 498
           + I+   +     +W S++          AA  L+  M+   +A DHI  +A
Sbjct: 679 NFIRNKDL----VLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVA 726



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 119/216 (55%), Gaps = 4/216 (1%)

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           ++  +++F  + +K + +WN MI  Y  N  P  +++LY +M V GI  +A +   +L A
Sbjct: 166 LVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKA 225

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM-RCQDVVS 367
           CG L     G ++H    ++     + + N++V MY KC  L  AR +FD+M   +DVVS
Sbjct: 226 CGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVS 285

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY-YFKIM 426
           W SMISAY  +GQ  +A+ LF +M  + L P++  FV+ L AC  +  +++G + +  ++
Sbjct: 286 WNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVL 345

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
              Y +   + +   L+ +  R GK+ EA ++   M
Sbjct: 346 KSSYYINVFVAN--ALIAMYARFGKMGEAANIFYNM 379



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 10/180 (5%)

Query: 303 ASVLPACGDLSALLLGRKIHRY-VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           +SVL  CG   AL  G+++H + +    L  ++ L   LV MY KCG L +A  +FD M 
Sbjct: 118 SSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMP 177

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            + + +W +MI AY  +G+   ++ L+ +M +SG+  D+  F  +L AC   GLL++ R 
Sbjct: 178 HKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC---GLLKDRRC 234

Query: 422 YFKI----MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             ++    + E Y  +  + +   +V +  +   +  A  L  +MP + +   W S+++A
Sbjct: 235 GAEVHGLAIKEGYVSIVFVAN--SIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 292


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 186/504 (36%), Positives = 294/504 (58%), Gaps = 43/504 (8%)

Query: 90   ITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG 149
            +   NV  +N +I          +AL  + ++   G  P   ++PC +K+CS    L+ G
Sbjct: 1102 VDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSG 1161

Query: 150  LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQN 209
               H      G + +LF  + L+ MY KCG LK+AR + +++P ++VV+W SM+ GY QN
Sbjct: 1162 RMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQN 1221

Query: 210  GRFDEAL----DVCREMESLR----IKPDADTMASLLPSVTNTSPENV------------ 249
             + D AL    D   E   +     +  D+  M S+L + +  S + +            
Sbjct: 1222 EQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKG 1281

Query: 250  ---------------------LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
                                 L  K++F  ++ K+ +SWN MIAVYA + +  EA++++ 
Sbjct: 1282 FDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFH 1341

Query: 289  QMEVH-GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
             M  H G+  NA+++++VL AC    AL  G+ IH  V +  L+ N+ +  +++DMY KC
Sbjct: 1342 GMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKC 1401

Query: 348  GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
            G +  A+  FD+M+ ++V SWT+M++ YGM G+  +A+ +F KM+ +G+ P+ I FVSVL
Sbjct: 1402 GRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVL 1461

Query: 408  SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
            +ACSHAGL+EEG ++F  M  +Y + P IEH+ C+VDL GRAG + EAY+LIK+M M+P+
Sbjct: 1462 AACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPD 1521

Query: 468  ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527
              +WGSL+ AC ++ N+D+G +AA  +F L P+  GYYVLLSN+YA AGRW DV+R+R  
Sbjct: 1522 FVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRML 1581

Query: 528  MNSKGIKKMPGAS-VEMNDQVQII 550
            M ++ + K PG S VE+  +V + 
Sbjct: 1582 MKNRQLVKPPGFSLVELKGRVHVF 1605



 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 136/426 (31%), Positives = 227/426 (53%), Gaps = 38/426 (8%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +L    + K L+++HA+II    L ++  +  KL+  Y   G++     +F +I N    
Sbjct: 33  LLQNCKNFKHLRQIHAKII-RSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTF 91

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +N++IR+   N L   AL +YKNM   G   D +T+P V+KAC+   S+ +G  +H S+
Sbjct: 92  TWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSL 151

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           +K G   ++F  N L+  Y KCG  + A +V   M  ++VV+W ++++G    G   EA 
Sbjct: 152 IKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA- 210

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                               + +F ++ +KN+VSW  MI  Y  
Sbjct: 211 ------------------------------------RRIFDEIPSKNVVSWTAMINGYIR 234

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N  P EA++L+ +M+   I PN  ++ S++ AC ++  L LGR IH Y  +  ++  + L
Sbjct: 235 NQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYL 294

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
             AL+DMY+KCGS+ +A  VF+ M  + + +W SMI++ G+ G G +A+ LFS+M    +
Sbjct: 295 GTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNV 354

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PD+I F+ VL AC H   ++EG  YF  MT+ Y + P  EH+ C+ +L  R+  ++EA+
Sbjct: 355 KPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAF 414

Query: 457 DLIKQM 462
              K++
Sbjct: 415 KSTKEV 420



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 164/349 (46%), Gaps = 44/349 (12%)

Query: 70   LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-------- 121
            L+  Y  CGQ+ D R +FDEI  +NVV +  +I  YV N    +AL ++K+         
Sbjct: 1183 LIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVE 1242

Query: 122  SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              +    D      VL ACS  +   +   +H  VVK G D ++  GN L+  Y KCG  
Sbjct: 1243 DGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQP 1302

Query: 182  KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPDADTMASLLPS 240
              +++V + M  KD ++WNSM+A YAQ+G   EAL+V   M   + ++ +A T++++L +
Sbjct: 1303 LVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLA 1362

Query: 241  VTNTSP---------------------------------ENVLSVKEMFLKLDNKNLVSW 267
              +                                      V   K+ F ++  KN+ SW
Sbjct: 1363 CAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSW 1422

Query: 268  NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
              M+A Y  +    EA+D++ +M   G++PN I+  SVL AC     +  G      ++ 
Sbjct: 1423 TAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKH 1482

Query: 328  K-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
            K  ++P +     +VD++ + G L EA  +  +M+ + D V W S++ A
Sbjct: 1483 KYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGA 1531



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 133/260 (51%), Gaps = 7/260 (2%)

Query: 54   IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
             ++ +    +  +G  LM  Y  CGQ + ++ VFD +  K+ + +N +I  Y  + L  +
Sbjct: 1276 FVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGE 1335

Query: 114  ALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV 172
            AL V+  M  H G   +  T   VL AC+ + +L  G  IH  V+K+ L+YN+  G  ++
Sbjct: 1336 ALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSII 1395

Query: 173  AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
             MY KCG ++ A++  + M  K+V +W +MVAGY  +GR  EALD+  +M    +KP+  
Sbjct: 1396 DMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYI 1455

Query: 233  TMASLLPSVTNTS--PENVLSVKEMFLKLD-NKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
            T  S+L + ++     E       M  K D    +  +  M+ ++       EA +L  +
Sbjct: 1456 TFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKR 1515

Query: 290  MEVHGIEPNAISVASVLPAC 309
            M+   ++P+ +   S+L AC
Sbjct: 1516 MK---MKPDFVVWGSLLGAC 1532



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 120/258 (46%), Gaps = 41/258 (15%)

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F ++ N    +WN++I     N +  +A+ LY  M   GI  +  +   V+ AC +  +
Sbjct: 81  LFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLS 140

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG-------------------------- 348
           + LG+ +H  + +     ++ ++N L+D Y KCG                          
Sbjct: 141 IDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISG 200

Query: 349 -----SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
                 L EAR +FD++  ++VVSWT+MI+ Y  + Q  +A+ LF +M    + P+    
Sbjct: 201 LISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTM 260

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE----HFACLVDLLGRAGKVEEAYDLI 459
           VS++ AC+  G+L  GR         Y +   IE        L+D+  + G +++A ++ 
Sbjct: 261 VSLIKACTEMGILTLGR-----GIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVF 315

Query: 460 KQMPMEPNERIWGSLVAA 477
           + MP + +   W S++ +
Sbjct: 316 ETMPRK-SLPTWNSMITS 332



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 3/164 (1%)

Query: 44   IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
            ++  K +H Q+I    L  N  +G  ++  Y  CG++   +  FD +  KNV  +  ++ 
Sbjct: 1369 LRAGKCIHDQVI-KMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVA 1427

Query: 104  SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV-KVGLD 162
             Y  +    +AL ++  M   G  P+  T+  VL ACS +  +  G     ++  K  ++
Sbjct: 1428 GYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIE 1487

Query: 163  YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAG 205
              + +   +V ++G+ GCL EA  ++  M  K D V W S++  
Sbjct: 1488 PGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGA 1531



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 81/225 (36%), Gaps = 71/225 (31%)

Query: 76  ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC 135
           +CG + + R +FDEI +KNVV +  +I  Y+ N    +AL ++K M      P+ YT   
Sbjct: 203 SCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVS 262

Query: 136 VLKACSGSNSLLVGLQIH------------------------CSVVKVGLDY-------N 164
           ++KAC+    L +G  IH                        C  +K  ++        +
Sbjct: 263 LIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKS 322

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMP----SKDVVT---------------------- 198
           L   N ++   G  G  +EA  + ++M       D +T                      
Sbjct: 323 LPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFT 382

Query: 199 --------------WNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
                         +  M   YA++   DEA    +E+ SL   P
Sbjct: 383 RMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEVGSLANSP 427


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 186/498 (37%), Positives = 298/498 (59%), Gaps = 16/498 (3%)

Query: 68  LKLMRTYGACGQMVDT-RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF 126
            K+M   G  G+  ++   +FD++ +++V+ +N +I  YV+N L    L +YK M   G 
Sbjct: 188 FKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGI 247

Query: 127 DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR 186
           D D  T   VL  C+ S +L +G  +H   +K   +  +   N L+ MY KCG L  A R
Sbjct: 248 DVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALR 307

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT-S 245
           V   M  ++VV+W SM+AGY ++GR D A+ + ++ME   +K D     S+L +   + S
Sbjct: 308 VFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGS 367

Query: 246 PENVLSVKEMFLKLDN--KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI-------- 295
            +N   V + ++K +N   NL   N ++ +Y        A  ++  M V  I        
Sbjct: 368 LDNGKDVHD-YIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIG 426

Query: 296 --EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
             +P++ ++A +LPAC  LSAL  G++IH Y+ R     +  + NALVD+Y KCG L  A
Sbjct: 427 ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLA 486

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
           R +FD +  +D+VSWT MIS YGM G G +A+A F++M  +G+ PD ++F+S+L ACSH+
Sbjct: 487 RLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHS 546

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           GLLE+G  +F IM   + + P++EH+AC+VDLL R G + +AY+ I+ +P+ P+  IWG+
Sbjct: 547 GLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGA 606

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           L+  C +Y ++++    A+ +F L P  +GYYVLL+NIYA+A +W +VKR+R+ +  KG+
Sbjct: 607 LLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGL 666

Query: 534 KKMPGAS-VEMNDQVQII 550
           +K PG S +E+  +V + 
Sbjct: 667 RKNPGCSWIEIKGKVNLF 684



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/377 (31%), Positives = 192/377 (50%), Gaps = 47/377 (12%)

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVK---VGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           TY  VL+ C+GS SL  G ++H S++K   V +D  L  G  LV++Y  CG LKE RRV 
Sbjct: 101 TYSSVLQLCAGSKSLTDGKKVH-SIIKSNNVAVDEVL--GLKLVSLYATCGDLKEGRRVF 157

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
           + M  K+V  WN MV+ YA+ G F E++ + + M              +   +    PE 
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIM--------------VEKGIEGKRPE- 202

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
             S  E+F KL +++++SWN MI+ Y +N +    +++Y QM   GI+ +  ++ SVL  
Sbjct: 203 --SASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVG 260

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C +   L LG+ +H    +   +  +   N L+DMY+KCG L  A  VF++M  ++VVSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR---YYFKI 425
           TSMI+ Y   G+   A+ L  +M   G+  D +A  S+L AC+ +G L+ G+    Y K 
Sbjct: 321 TSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKA 380

Query: 426 MTEQYKLVPRIEHFAC--LVDLLGRAGKVEEAYDLIKQM-------------PMEPNERI 470
              +  L      F C  L+D+  + G ++ A  +   M              ++P+ R 
Sbjct: 381 NNMESNL------FVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRT 434

Query: 471 WGSLVAACCLYSNMDIG 487
              ++ AC   S ++ G
Sbjct: 435 MACILPACASLSALERG 451



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 106/244 (43%), Gaps = 18/244 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H  I+ N +  S+  +   L+  Y  CG +   R +FD I +K++V + V+I  Y  
Sbjct: 452 KEIHGYILRNGY-SSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGM 510

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK--VGLDYNL 165
           +    +A+  +  M   G +PD  ++  +L ACS S  L  G +    ++K    ++  L
Sbjct: 511 HGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMKNDFNIEPKL 569

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
            +   +V +  + G L +A   +  +P + D   W +++ G       + A  V   +  
Sbjct: 570 EHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERV-- 627

Query: 225 LRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL-----VSW-----NVMIAVY 274
             ++P+      LL ++     E    VK M  K+  K L      SW      V + V 
Sbjct: 628 FELEPENTGYYVLLANIY-AEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVS 686

Query: 275 ANNS 278
            NNS
Sbjct: 687 GNNS 690


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 191/544 (35%), Positives = 309/544 (56%), Gaps = 40/544 (7%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC D L   P++  L  +HA+ +++    S+  +   LM  Y  CG+M   R VFD +  
Sbjct: 132 ACGDYL--LPEMGAL--IHARTVMSG-FDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRE 186

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           + +V +N +I  Y  N    +AL V+  M   G +PDC T   VL  CS    L VG ++
Sbjct: 187 RTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRV 246

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  V    L  ++   N L+ MY KCG + EA+ +  +M  +DVV+W +M+ GY  NG  
Sbjct: 247 HALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDA 306

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTN----------------TSPENVLSVK--- 253
             AL +C+ M+   +KP+  T+AS+L +  +                   E+ + V+   
Sbjct: 307 RSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETAL 366

Query: 254 -EMFLKLDNKNL-------------VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
            +M+ K +N NL               WN +I+   +N +  +A++L+ QM +  ++PN 
Sbjct: 367 IDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPND 426

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
            ++ S+LPA   L+ L   R +H Y+ R      + +   L+D+Y+KCGSL  A  +F+ 
Sbjct: 427 ATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNG 486

Query: 360 M--RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           +  + +D+++W+++I+ YGM G G  A++LF +M+ SG+ P+ I F S+L ACSHAGL++
Sbjct: 487 IPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVD 546

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           EG   FK M E  ++  R +H+ C++DLLGRAG++EEAY+LI+ M   PN  +WG+L+ +
Sbjct: 547 EGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGS 606

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
           C ++ N+++G +AA  +F L P  +G YVLL+NIY+  GRW D + VR  MN+ G++K P
Sbjct: 607 CVIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTP 666

Query: 538 GASV 541
             S+
Sbjct: 667 AHSL 670



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 162/535 (30%), Positives = 261/535 (48%), Gaps = 44/535 (8%)

Query: 16  PVQALVLSTQYTLLSGDACNDILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGL--KL 70
           P QAL  S ++ L +      +L +    K++   K++HA  I    L S  S  L   L
Sbjct: 4   PSQALSKS-KHLLTATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSL 62

Query: 71  MRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD-PD 129
              Y  CG     R +FDE+ N ++  +N +IR Y N+ L YDAL ++  M   G   PD
Sbjct: 63  AAAYAMCGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPD 122

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            YTYP V+KAC       +G  IH   V  G D + F  N L+AMY  CG ++ ARRV +
Sbjct: 123 NYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFD 182

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP---------- 239
            M  + +V+WN+M+ GY +NG   EAL V   M    I+PD  T+ S+LP          
Sbjct: 183 LMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEV 242

Query: 240 -----------------SVTNTSPE------NVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                            SV N+  +      N+   + +F ++D +++VSW  M+  Y  
Sbjct: 243 GRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYIL 302

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N     A+ L   M+   ++PN +++ASVL AC  L +L  GR +H +  R+KL+  + +
Sbjct: 303 NGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIV 362

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
           E AL+DMYAKC ++  +  VF +   Q    W ++IS    +G    A+ LF +MLM  +
Sbjct: 363 ETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAV 422

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P+     S+L A +    L++ R     +      + RIE    L+D+  + G +E A+
Sbjct: 423 DPNDATLNSLLPAYAFLTDLQQARNMHGYLIRS-GFLSRIEVATILIDIYSKCGSLESAH 481

Query: 457 DLIKQMPMEPNERI-WGSLVAACCLYSNMDIGILAADHIFH--LAPNQSGYYVLL 508
           ++   +P +  + I W +++A   ++ + +  I   D +    + PN+  +  +L
Sbjct: 482 NIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSIL 536


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 201/617 (32%), Positives = 325/617 (52%), Gaps = 114/617 (18%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI---TNKNVVFFNV 100
           ++  ++LH+Q+++    H  P +  +L+  Y     +   R VFD I   +  +++ +N 
Sbjct: 44  LQQARQLHSQLVLTT-AHRLPFLAARLIAVYARFAFLSHARKVFDAIPLESLHHLLLWNS 102

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           +IR+ V++  +  AL +Y  M   GF PD +T P V++ACS   S  +   +HC  +++G
Sbjct: 103 IIRANVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMG 162

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQN----------- 209
              +L   N LV MYGK G +++AR++ + M  + +V+WN+MV+GYA N           
Sbjct: 163 FRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFK 222

Query: 210 ------------------------GRFDEALDVCREMESLRIKPDADTMASLLPS----- 240
                                   G +DE L++ + M +  I+  A+ +A +L       
Sbjct: 223 RMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAVVLSVCADMA 282

Query: 241 -----------VTNTSPENVLSVK-----------------EMFLKLDNKNLVSWNVMIA 272
                      V     E+ L VK                 ++FL++ NKNLVSWN +I+
Sbjct: 283 EVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALIS 342

Query: 273 VYANNSMPAEA-----------------------------------------VDLYLQME 291
            YA + +  EA                                         ++L+ QM+
Sbjct: 343 SYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQ 402

Query: 292 VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351
           +  +  N ++++SVL  C +L+AL LGR++H Y  R  +  N+ + N L++MY KCG   
Sbjct: 403 LAKVMANCVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFK 462

Query: 352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
           E   VFD +  +D++SW S+I  YGM G G +A+  F++M+ + + PD+I FV++LSACS
Sbjct: 463 EGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNITFVAILSACS 522

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIW 471
           HAGL+  GR  F  M  ++++ P +EH+AC+VDLLGRAG ++EA D+++ MP+EPNE +W
Sbjct: 523 HAGLVAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRNMPIEPNEYVW 582

Query: 472 GSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531
           G+L+ +C +Y +MDI    A  I  L    +G ++LLSNIYA  GRW D  RVR    +K
Sbjct: 583 GALLNSCRMYKDMDIVEETASQILTLKSKITGSFMLLSNIYAANGRWDDSARVRVSARTK 642

Query: 532 GIKKMPGAS-VEMNDQV 547
           G+KK+PG S +E+  +V
Sbjct: 643 GLKKIPGQSWIEVRKKV 659


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 179/525 (34%), Positives = 293/525 (55%), Gaps = 33/525 (6%)

Query: 49   KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
            K+  + I+   + SN  +   LM  Y  CG +++ ++VF+    ++++ +N +I  +  +
Sbjct: 506  KMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQH 565

Query: 109  YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
              Y  A  ++  M   G +PD  T+  VL  C    +L +G QIH  +++ GL  ++  G
Sbjct: 566  GSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLG 625

Query: 169  NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
            N L+ MY +CG L++A  V + +  ++V++W +M+ G+A  G   +A ++  +M++   K
Sbjct: 626  NALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFK 685

Query: 229  PDADTMASLLPS----------------VTNTSPE-----------------NVLSVKEM 255
            P   T +S+L +                + N+  E                 ++   +++
Sbjct: 686  PVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKV 745

Query: 256  FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
            F K+ N++++SWN MIA YA N +   A+    QM+  G+  N  S  S+L AC   SAL
Sbjct: 746  FDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSAL 805

Query: 316  LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
              G+++H  + ++K+Q ++R+  AL+ MYAKCGSL EA+ VFD    ++VV+W +MI+AY
Sbjct: 806  EEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAY 865

Query: 376  GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
               G    A+  F+ M   G+ PD   F S+LSAC+H+GL+ EG   F  +  Q+ L P 
Sbjct: 866  AQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPT 925

Query: 436  IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
            IEH+ CLV LLGRAG+ +EA  LI QMP  P+  +W +L+ AC ++ N+ +   AA++  
Sbjct: 926  IEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNAL 985

Query: 496  HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
             L       YVLLSN+YA AGRW DV ++R+ M  +GI+K PG S
Sbjct: 986  KLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRS 1030



 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 145/481 (30%), Positives = 245/481 (50%), Gaps = 45/481 (9%)

Query: 36  DILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           ++LD +     L   K++H ++ +N+ L+S+  +G  L   +  CG +   +   +   +
Sbjct: 289 NLLDAFTTPSMLDEGKRIH-KLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFAD 347

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           ++VV +N LI +   +  Y +A   Y  M   G   +  TY  VL ACS S +L  G  I
Sbjct: 348 RDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELI 407

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  + +VG   ++  GN L++MY +CG L  AR + N MP +D+++WN+++AGYA+    
Sbjct: 408 HSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDR 467

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSP-------------------------- 246
            EA+ + ++M+S  +KP   T   LL + TN+S                           
Sbjct: 468 GEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANAL 527

Query: 247 -------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                   +++  + +F     ++++SWN MIA +A +     A  L+L+M+  G+EP+ 
Sbjct: 528 MNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDK 587

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           I+ ASVL  C +  AL LGR+IH  +    LQ ++ L NAL++MY +CGSL +A  VF  
Sbjct: 588 ITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHS 647

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
           +R ++V+SWT+MI  +   G+   A  LF +M   G  P    F S+L AC  +  L+EG
Sbjct: 648 LRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEG 707

Query: 420 RYYF-KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI--WGSLVA 476
           +     I+   Y+L   + +   L+    ++G + +A  +  +M   PN  I  W  ++A
Sbjct: 708 KKVIAHILNSGYELDTGVGN--ALISAYSKSGSMTDARKVFDKM---PNRDIMSWNKMIA 762

Query: 477 A 477
            
Sbjct: 763 G 763



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/473 (28%), Positives = 239/473 (50%), Gaps = 46/473 (9%)

Query: 46  TLKKLHAQIIINQHLH-----SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           T K L A  +I+ H+      S+  IG  L+  Y  CG +   R +F+ +  ++++ +N 
Sbjct: 397 TSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNA 456

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           +I  Y       +A+ +YK M   G  P   T+  +L AC+ S++   G  IH  +++ G
Sbjct: 457 IIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSG 516

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
           +  N    N L+ MY +CG + EA+ V     ++D+++WNSM+AG+AQ+G ++ A  +  
Sbjct: 517 IKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFL 576

Query: 221 EMESLRIKPDADTMASLLPSVTNTSPE--------------------------------- 247
           EM+   ++PD  T AS+L    N  PE                                 
Sbjct: 577 EMKKEGLEPDKITFASVLVGCKN--PEALELGRQIHMLIIESGLQLDVNLGNALINMYIR 634

Query: 248 --NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
             ++    E+F  L ++N++SW  MI  +A+     +A +L+ QM+  G +P   + +S+
Sbjct: 635 CGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSI 694

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L AC   + L  G+K+  ++     + +  + NAL+  Y+K GS+T+AR VFD+M  +D+
Sbjct: 695 LKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDI 754

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-RYYFK 424
           +SW  MI+ Y  +G G  A+    +M   G+  +  +FVS+L+ACS    LEEG R + +
Sbjct: 755 MSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAE 814

Query: 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           I+  + +   R+   A L+ +  + G +EEA ++      E N   W +++ A
Sbjct: 815 IVKRKMQGDVRVG--AALISMYAKCGSLEEAQEVFDNF-TEKNVVTWNAMINA 864



 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 150/558 (26%), Positives = 256/558 (45%), Gaps = 78/558 (13%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           KK+H++II       +P +   L+  YG C  +   R VF  I  ++VV +N ++  Y  
Sbjct: 203 KKIHSKII-EAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQ 261

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                + + ++  MS  G  PD  TY  +L A +  + L  G +IH   V  GL+ ++  
Sbjct: 262 KAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRV 321

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           G  L  M+ +CG +  A++ L     +DVV +N+++A  AQ+G ++EA +   +M S  +
Sbjct: 322 GTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGV 381

Query: 228 KPDADTMASLLPSVTNTSP---------------------------------ENVLSVKE 254
             +  T  S+L + + +                                    ++   +E
Sbjct: 382 VMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARE 441

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F  +  ++L+SWN +IA YA      EA+ LY QM+  G++P  ++   +L AC + SA
Sbjct: 442 LFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSA 501

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
              G+ IH  + R  ++ N  L NAL++MY +CGS+ EA+ VF+  R +D++SW SMI+ 
Sbjct: 502 YSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAG 561

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ----- 429
           +   G    A  LF +M   GL PD I F SVL  C +   LE GR    ++ E      
Sbjct: 562 HAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLD 621

Query: 430 --------------------YKLVPRIEH-----FACLVDLLGRAGKVEEAYDLIKQMP- 463
                               Y++   + H     +  ++      G+  +A++L  QM  
Sbjct: 622 VNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQN 681

Query: 464 --MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV------LLSNIYAKA 515
              +P +  + S++ AC   + +D G     HI +     SGY +       L + Y+K+
Sbjct: 682 DGFKPVKSTFSSILKACMSSACLDEGKKVIAHILN-----SGYELDTGVGNALISAYSKS 736

Query: 516 GRWGDVKRVRKFMNSKGI 533
           G   D ++V   M ++ I
Sbjct: 737 GSMTDARKVFDKMPNRDI 754



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 137/495 (27%), Positives = 223/495 (45%), Gaps = 56/495 (11%)

Query: 48  KKLHAQIIINQHLHSNPSIGLK--LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           K++HAQ++        P I L   L+  Y  C  + D   VF ++  ++V+ +N LI  Y
Sbjct: 102 KRIHAQMV---EAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCY 158

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
                   A  +++ M   GF P   TY  +L AC     L  G +IH  +++ G   + 
Sbjct: 159 AQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDP 218

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
              N L+ MYGKC  L  AR+V + +  +DVV++N+M+  YAQ    +E + +  +M S 
Sbjct: 219 RVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSE 278

Query: 226 RIKPDADTMASLLPSVTNTSP---------------------------------ENVLSV 252
            I PD  T  +LL + T  S                                   +V   
Sbjct: 279 GIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGA 338

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           K+      ++++V +N +IA  A +    EA + Y QM   G+  N  +  SVL AC   
Sbjct: 339 KQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTS 398

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
            AL  G  IH ++       ++++ N+L+ MYA+CG L  AR +F+ M  +D++SW ++I
Sbjct: 399 KALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAII 458

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           + Y       +A+ L+ +M   G+ P  + F+ +LSAC+++    +G+     M  +  L
Sbjct: 459 AGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGK-----MIHEDIL 513

Query: 433 VPRIE---HFA-CLVDLLGRAGKVEEAY---------DLIKQMPMEPNERIWGSLVAACC 479
              I+   H A  L+++  R G + EA          D+I    M       GS  AA  
Sbjct: 514 RSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYK 573

Query: 480 LYSNMDIGILAADHI 494
           L+  M    L  D I
Sbjct: 574 LFLEMKKEGLEPDKI 588



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 175/375 (46%), Gaps = 35/375 (9%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           K P+   L +    +II   L  + ++G  L+  Y  CG + D   VF  + ++NV+ + 
Sbjct: 598 KNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWT 657

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            +I  + +      A  ++  M   GF P   T+  +LKAC  S  L  G ++   ++  
Sbjct: 658 AMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNS 717

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G + +   GN L++ Y K G + +AR+V + MP++D+++WN M+AGYAQNG    AL   
Sbjct: 718 GYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFA 777

Query: 220 REMESLRIKPDADTMASLLPSVTNTSP--------------------------------- 246
            +M+   +  +  +  S+L + ++ S                                  
Sbjct: 778 YQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKC 837

Query: 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
            ++   +E+F     KN+V+WN MI  YA + + ++A+D +  M+  GI+P+  +  S+L
Sbjct: 838 GSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSIL 897

Query: 307 PACGDLSALLLGRKIHRYVERKK-LQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-QD 364
            AC     ++ G +I   +E +  L P +     LV +  + G   EA T+ +QM    D
Sbjct: 898 SACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPD 957

Query: 365 VVSWTSMISAYGMSG 379
              W +++ A  + G
Sbjct: 958 AAVWETLLGACRIHG 972



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 174/365 (47%), Gaps = 34/365 (9%)

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
            Y  +++ C+   SL    +IH  +V+ G+  ++F  N L+ MY KC  + +A +V   M
Sbjct: 84  AYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKM 143

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL------------- 238
           P +DV++WNS+++ YAQ G   +A  +  EM++    P   T  S+L             
Sbjct: 144 PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGK 203

Query: 239 --------------PSVTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNS 278
                         P V N+        E++ S +++F  +  +++VS+N M+ +YA  +
Sbjct: 204 KIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKA 263

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
              E + L+ QM   GI P+ ++  ++L A    S L  G++IH+    + L  ++R+  
Sbjct: 264 YVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGT 323

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           AL  M+ +CG +  A+   +    +DVV + ++I+A    G   +A   + +M   G+  
Sbjct: 324 ALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVM 383

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           +   ++SVL+ACS +  L  G      ++E       ++    L+ +  R G +  A +L
Sbjct: 384 NRTTYLSVLNACSTSKALGAGELIHSHISE-VGHSSDVQIGNSLISMYARCGDLPRAREL 442

Query: 459 IKQMP 463
              MP
Sbjct: 443 FNTMP 447



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 149/316 (47%), Gaps = 35/316 (11%)

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
           +V    ++FLK+  ++++SWN +I+ YA      +A  L+ +M+  G  P+ I+  S+L 
Sbjct: 132 SVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILT 191

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           AC   + L  G+KIH  +     Q + R++N+L++MY KC  L  AR VF  +  +DVVS
Sbjct: 192 ACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVS 251

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           + +M+  Y       + + LF +M   G+ PD + ++++L A +   +L+EG+   K+  
Sbjct: 252 YNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAV 311

Query: 428 EQ------------YKLVPR----------IEHFA--------CLVDLLGRAGKVEEAYD 457
            +              +  R          +E FA         L+  L + G  EEA++
Sbjct: 312 NEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFE 371

Query: 458 LIKQMPMEP---NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
              QM  +    N   + S++ AC     +  G L   HI  +    S    + +++ + 
Sbjct: 372 QYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVG--HSSDVQIGNSLISM 429

Query: 515 AGRWGDVKRVRKFMNS 530
             R GD+ R R+  N+
Sbjct: 430 YARCGDLPRARELFNT 445



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 9/195 (4%)

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
           + NLVS  VM          +E  DL    +    E N  +   ++  C    +L   ++
Sbjct: 47  SSNLVSVKVM---RDEQHRGSEREDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKR 103

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
           IH  +    + P++ L N L++MY KC S+++A  VF +M  +DV+SW S+IS Y   G 
Sbjct: 104 IHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGF 163

Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-RYYFKIMTEQYKLVPRIEHF 439
              A  LF +M  +G  P  I ++S+L+AC     LE G + + KI+   Y+  PR+++ 
Sbjct: 164 KKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQN- 222

Query: 440 ACLVDLLGRAGKVEE 454
                LL   GK E+
Sbjct: 223 ----SLLNMYGKCED 233


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 182/514 (35%), Positives = 295/514 (57%), Gaps = 33/514 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  CG +     VF EI +K+ + +N ++  YV N LY +A+  +  M  +GF+PD
Sbjct: 305 LLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPD 364

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
                 +L A      L+ G ++H   VK  LD +L   N L+ MY KC  ++ + RV +
Sbjct: 365 HACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFD 424

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            M  KD V+W +++A YAQ+ R+ EA+   R  +   IK D   M S+L + +     ++
Sbjct: 425 RMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISL 484

Query: 250 LS--------------------------------VKEMFLKLDNKNLVSWNVMIAVYANN 277
           L                                    +F  LD K++V+W  M+  +A N
Sbjct: 485 LKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAEN 544

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
            +  EAV L+ +M   GI+P+++++  +L A   LS+L  G++IH ++ R K      + 
Sbjct: 545 GLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVV 604

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
           ++LVDMY+ CGS+  A  VFD+ +C+DVV WT+MI+A GM G G  A+ +F +ML +G+ 
Sbjct: 605 SSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVS 664

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
           PD ++F+++L ACSH+ L++EG++Y  +M  +YKL P  EH+AC+VDLLGR+G+ EEAY 
Sbjct: 665 PDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYK 724

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
            IK MP+EP   +W +L+ AC ++ N ++ ++A D +  L P+  G YVL+SN++A+ G+
Sbjct: 725 FIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGK 784

Query: 518 WGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           W +VK +R  M  +G++K P  S +E+ + V   
Sbjct: 785 WNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTF 818



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 130/403 (32%), Positives = 202/403 (50%), Gaps = 39/403 (9%)

Query: 48  KKLHAQIIINQHLHSNPS--IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           ++LHA  +    L  + +  +  KL+  YG CG++ D   +FD +  + V  +N LI + 
Sbjct: 75  RQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGAC 134

Query: 106 VNNYLYYDALHVYKNMS----VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           +++    +A+ VY+ M     V G  PD  T   VLKAC        G ++H   VK GL
Sbjct: 135 LSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGL 194

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDM-PSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
           D +    N LV MY KCG L  A RV   M   +DV +WNS ++G  QNG F EALD+ R
Sbjct: 195 DRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFR 254

Query: 221 EMESLRIKPDADTMASLLPSVTNTSPEN-------------------------------- 248
            M+S     ++ T   +L      +  N                                
Sbjct: 255 RMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLVMYARCGW 314

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           V S   +F ++ +K+ +SWN M++ Y  N + AEA+D + +M  +G  P+   + S+L A
Sbjct: 315 VDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSA 374

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
            G L  L+ GR++H Y  +++L  +L++ N L+DMY KC S+  +  VFD+MR +D VSW
Sbjct: 375 VGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSW 434

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
           T++I+ Y  S +  +A+  F      G+  D +   S+L ACS
Sbjct: 435 TTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACS 477



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 183/390 (46%), Gaps = 44/390 (11%)

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL---DYNLFNGNGLVAMYGKCGCLKEA 184
           P    Y  VL   +   ++  G Q+H   V  G    D   F    L+ MYGKCG L +A
Sbjct: 53  PPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDA 112

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR----IKPDADTMASLLPS 240
            R+ + MP++ V +WN+++     +G   EA+ V R M +        PD  T+AS+L +
Sbjct: 113 HRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKA 172

Query: 241 VTNT------SPENVLSVKE--------------MFLKL--------------DNKNLVS 266
                     S  + L+VK               M+ K               D +++ S
Sbjct: 173 CGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVAS 232

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           WN  I+    N M  EA+DL+ +M+  G   N+ +   VL  C +L+ L  GR++H  + 
Sbjct: 233 WNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALL 292

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           +   + N++  NAL+ MYA+CG +  A  VF ++  +D +SW SM+S Y  +    +A+ 
Sbjct: 293 KCGTEFNIQC-NALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAID 351

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
            F +M+ +G  PD    VS+LSA  H G L  GR       +Q +L   ++    L+D+ 
Sbjct: 352 FFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQ-RLDSDLQIANTLMDMY 410

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
            +   VE +  +  +M ++ +   W +++A
Sbjct: 411 IKCYSVECSARVFDRMRIK-DHVSWTTIIA 439



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 163/362 (45%), Gaps = 37/362 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++HA   + Q L S+  I   LM  Y  C  +  +  VFD +  K+ V +  +I  Y  
Sbjct: 385 REVHA-YAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQ 443

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +  Y +A+  ++     G   D      +L+ACSG  S+ +  Q+H   ++ GL  +L  
Sbjct: 444 SSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL-LDLIL 502

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N ++ +YG+CG +  A  +   +  KD+VTW SMV  +A+NG   EA+ +  +M +  I
Sbjct: 503 KNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGI 562

Query: 228 KPDADTMASLLPSVTNTSPEN--------------------VLSVKEMF---------LK 258
           +PD+  +  +L ++   S                       V S+ +M+         LK
Sbjct: 563 QPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALK 622

Query: 259 LDN----KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           + +    K++V W  MI     +    +A+ ++ +M   G+ P+ +S  ++L AC     
Sbjct: 623 VFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKL 682

Query: 315 LLLGR-KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMI 372
           +  G+  +   V + KLQP       +VD+  + G   EA      M  +   V W +++
Sbjct: 683 VDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALL 742

Query: 373 SA 374
            A
Sbjct: 743 GA 744



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 131/284 (46%), Gaps = 18/284 (6%)

Query: 32  DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
           +AC+ +      I  LK++H+  I N  L  +  +  +++  YG CG++    ++F+ + 
Sbjct: 474 EACSGL----KSISLLKQVHSYAIRNGLL--DLILKNRIIDIYGECGEVCYALNIFEMLD 527

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
            K++V +  ++  +  N L ++A+ ++  M   G  PD      +L A +G +SL  G +
Sbjct: 528 KKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKE 587

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           IH  +++          + LV MY  CG +  A +V ++   KDVV W +M+     +G 
Sbjct: 588 IHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGH 647

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKL--DNKNLVSWN- 268
             +A+ + + M    + PD  +  +LL + +++    ++   + +L +      L  W  
Sbjct: 648 GKQAIYIFKRMLETGVSPDHVSFLALLYACSHS---KLVDEGKFYLDMMVSKYKLQPWQE 704

Query: 269 ---VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
               ++ +   +    EA      M    +EP ++   ++L AC
Sbjct: 705 HYACVVDLLGRSGQTEEAYKFIKSMP---LEPKSVVWCALLGAC 745



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 9/149 (6%)

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS- 394
           L   L+ MY KCG L +A  +FD M  + V SW ++I A   SG   +AV ++  M  S 
Sbjct: 95  LATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASE 154

Query: 395 ---GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL-VPRIEHFA-CLVDLLGRA 449
              G  PD     SVL AC   G   +GR   ++     K  + R    A  LV +  + 
Sbjct: 155 PVAGAAPDGCTLASVLKACGAEG---DGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKC 211

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           G ++ A  + + M    +   W S ++ C
Sbjct: 212 GLLDSALRVFEWMRDGRDVASWNSAISGC 240


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 199/568 (35%), Positives = 312/568 (54%), Gaps = 67/568 (11%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNV------------ 95
           KK+H+ II +  +  + ++GLKL+  Y  CG + + R VFD +  KNV            
Sbjct: 119 KKVHS-IIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAK 177

Query: 96  ---------------------------------------VFFNVLIRSYVNNYLYYDALH 116
                                                  + +N +I  YV+N L    L 
Sbjct: 178 IGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLG 237

Query: 117 VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYG 176
           +YK M   G D D  T   VL  C+ S +L +G  +H   +K   +  +   N L+ MY 
Sbjct: 238 IYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYS 297

Query: 177 KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS 236
           KCG L  A RV   M  ++VV+W SM+AGY ++GR D A+ + ++ME   +K D   + S
Sbjct: 298 KCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITS 357

Query: 237 LLPSVTNT-SPENVLSVKEMFLKLDN--KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
           +L +   + S +N   V + ++K +N   NL   N ++ +YA       A  ++  M V 
Sbjct: 358 ILHACARSGSLDNGKDVHD-YIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVK 416

Query: 294 GI----------EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
            I          +P++ ++A VLPAC  LSAL  G++IH Y+ R     +  + NALVD+
Sbjct: 417 DIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDL 476

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
           Y KCG L  AR +FD +  +D+VSWT MI+ YGM G G +A+A F++M  +G+ PD ++F
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSF 536

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           +S+L ACSH+GLLE+G  +F IM   + + P++EH+AC+VDLL R G + +AY+ I+ +P
Sbjct: 537 ISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLP 596

Query: 464 MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKR 523
           + P+  IWG+L+  C  Y ++++    A+ +F L P  SGYYVLL+NIYA+A +W +VKR
Sbjct: 597 IAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKR 656

Query: 524 VRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           +R+ +  +G++K PG S +E+  +V + 
Sbjct: 657 LREKIGKQGLRKNPGCSWIEIKGKVNLF 684



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 119/377 (31%), Positives = 189/377 (50%), Gaps = 47/377 (12%)

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVK---VGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           TY  VL+ C+G  S   G ++H S++K   VG+D  L  G  LV+ Y  CG LKE RRV 
Sbjct: 101 TYSSVLQLCAGLKSFTDGKKVH-SIIKSNSVGVDEAL--GLKLVSFYATCGDLKEGRRVF 157

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
           + M  K+V  WN MV+ YA+ G F E++ + + M              +   +    PE+
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIM--------------VEKGIEGKRPES 203

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
                E+F KL +++++SWN MI+ Y +N +    + +Y QM   GI+ +  ++ SVL  
Sbjct: 204 AF---ELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVG 260

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C +   L LG+ +H    +   +  +   N L+DMY+KCG L  A  VF++M  ++VVSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR---YYFKI 425
           TSMI+ Y   G+   A+ L  +M   G+  D +A  S+L AC+ +G L+ G+    Y K 
Sbjct: 321 TSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380

Query: 426 MTEQYKLVPRIEHFAC--LVDLLGRAGKVEEAYDLIKQM-------------PMEPNERI 470
              +  L      F C  L+D+  + G +E A  +   M              ++P+ R 
Sbjct: 381 NNMESNL------FVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRT 434

Query: 471 WGSLVAACCLYSNMDIG 487
              ++ AC   S ++ G
Sbjct: 435 MACVLPACASLSALERG 451


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 187/539 (34%), Positives = 293/539 (54%), Gaps = 34/539 (6%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N ++  +  +K LK +HA ++    L  +  +  K++R     G    +  + D+    N
Sbjct: 14  NRLIQGFSCLKHLKHIHAALL-RLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPN 72

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
           +  FN +IR  V N  + +++ +Y +M   G  PD +T+P VLKAC+      +G+++H 
Sbjct: 73  IFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHS 132

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            VVK G + + F    L+ +Y KCG +  A +V +D+P K+  +W + ++GY   G+  E
Sbjct: 133 LVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCRE 192

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSP---------------------------- 246
           A+D+ R +  + ++PD+ ++  +L +   T                              
Sbjct: 193 AIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVD 252

Query: 247 -----ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAIS 301
                 N+   + +F  +  KN+VSW+ MI  YA+N +P EA+DL+ +M   G++P+  +
Sbjct: 253 FYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYA 312

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           +  VL +C  L AL LG      +   +   N  L  AL+DMYAKCG +  A  VF  MR
Sbjct: 313 MVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMR 372

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            +D V W + IS   MSG   DA+ LF +M  SG+ PD   FV +L AC+HAGL+EEGR 
Sbjct: 373 KKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRR 432

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
           YF  M   + L P IEH+ C+VDLLGRAG ++EA+ LIK MPME N  +WG+L+  C L+
Sbjct: 433 YFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLH 492

Query: 482 SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            +  +  +    +  L P  SG YVLLSNIYA + +W +  ++R  M+ +G+KK+PG S
Sbjct: 493 RDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYS 551



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 169/377 (44%), Gaps = 40/377 (10%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC  +LD    +K    +H+ +++     ++  + + L+  Y  CG + +   VFD+I +
Sbjct: 117 ACARVLDSELGVK----MHS-LVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPD 171

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           KN   +   I  YV      +A+ +++ +   G  PD ++   VL AC  +  L  G  I
Sbjct: 172 KNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWI 231

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
              + + G+  N+F    LV  YGKCG ++ AR V + M  K++V+W+SM+ GYA NG  
Sbjct: 232 DEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLP 291

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSP------------------ENVLSVK- 253
            EALD+  +M +  +KPD   M  +L S                         +VL    
Sbjct: 292 KEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTAL 351

Query: 254 --------------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                         E+F  +  K+ V WN  I+  A +    +A+ L+ QME  GI+P+ 
Sbjct: 352 IDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDR 411

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVE-RKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
            +   +L AC     +  GR+    +E    L P +     +VD+  + G L EA  +  
Sbjct: 412 NTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIK 471

Query: 359 QMRCQ-DVVSWTSMISA 374
            M  + + + W +++  
Sbjct: 472 SMPMEANAIVWGALLGG 488


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 189/527 (35%), Positives = 311/527 (59%), Gaps = 11/527 (2%)

Query: 22   LSTQYTLLSG-DACNDILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLKLMRTYGAC 77
            +ST  T  S  D     +D Y   + L   + LHA ++I   L        KLM  Y  C
Sbjct: 793  ISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVI-IGLARLTYFAAKLMSFYTEC 851

Query: 78   GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
            GQ+ + R +FD+I N N+  + VL  +      Y +AL  +  M   G  P+ +  P +L
Sbjct: 852  GQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSIL 911

Query: 138  KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
            KAC   +    G  +H  ++K   + + +  + L+ MY KCG +++A RV + +  KD+V
Sbjct: 912  KACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLV 971

Query: 198  TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
              N+MV+GYAQ+G   EALB+ ++M+   +KP+  +  +L+   +    ++++S  E+F 
Sbjct: 972  VMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVS--EVFR 1029

Query: 258  KLD----NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
             +       ++VSW  +I+ +  N    E  D + +M   G  P++++++S+LPAC +++
Sbjct: 1030 LMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVA 1089

Query: 314  ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
             L  G++IH Y     ++ ++ + +ALVDMYAKCG ++EA+ +F  M  ++ V+W S+I 
Sbjct: 1090 NLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIF 1149

Query: 374  AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
             Y   G   +A+ LF++M  S    D + F +VL+ACSHAG++E G   F  M E+Y++ 
Sbjct: 1150 GYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIE 1209

Query: 434  PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
            PR+EH+AC+VDLLGRAGK+ EAYDLIK MP+EP++ +WG+L+ AC  + N+++  +AA+H
Sbjct: 1210 PRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEH 1269

Query: 494  IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            +F L P   G  +LLSN+YA AGRWG+  +++K M  +   K PG S
Sbjct: 1270 LFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCS 1316



 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 168/529 (31%), Positives = 276/529 (52%), Gaps = 35/529 (6%)

Query: 54  IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
            ++   L S+  +   L+  Y  CG++     V+D++T+ +    N LI +Y  N  +  
Sbjct: 138 FVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQ 197

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           A  V+  +   G  P+ YTY  +L  C   +++  G Q+H  VVK+        GN L+ 
Sbjct: 198 AFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLT 257

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           +Y KCG ++EA  V   +  +++++W + + G+ Q+G F +AL     M    I+P+  T
Sbjct: 258 LYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFT 317

Query: 234 MASLLPSV-------------TNTSPENVLS-------VKEMFLKLDNKNL--------- 264
            + +L S              T    + + S       + +M+  L   +          
Sbjct: 318 FSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMG 377

Query: 265 -----VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
                VSWN +IA Y  N    +A++ + +M    +  N  + +++  AC    +L    
Sbjct: 378 RAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTV 437

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
           +IH  + +  ++ NL + ++L++ Y +CGSL  A  VF Q+   DVVSW S+I AY  +G
Sbjct: 438 QIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNG 497

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
             + A+ L  KM+  G  P S  F++VLSACSH+GL++EG+ +FK M + Y + P   H 
Sbjct: 498 DPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHC 557

Query: 440 ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
           +C+VD+LGRAG++E A D IK++ M+P   IW  L+AAC   SN+ +    A+ I  L P
Sbjct: 558 SCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEP 617

Query: 500 NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           N +  YV LSN+YA+ GRW D +  R+ M  K I K PG S +E+N+++
Sbjct: 618 NDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVNNKM 666



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 148/321 (46%), Gaps = 35/321 (10%)

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           GF    Y +   L  C     + +G + HC VVK+GL  + F    L+ MY KCG +  A
Sbjct: 109 GFPHRQYVFS-ALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSA 167

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP----- 239
            RV + M S D  T N +++ YA+NG F +A  V  ++ ++  +P+  T +++L      
Sbjct: 168 VRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTI 227

Query: 240 -----------------SVTNTSPENVL-----------SVKEMFLKLDNKNLVSWNVMI 271
                             ++ T+  N L             + +F  L  +N++SW   I
Sbjct: 228 SAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASI 287

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
             +  +    +A+  +  M   GIEPN  + + VL +CG +   + GR  H  V +K + 
Sbjct: 288 NGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMA 347

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQM-RCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
             + +  A++DMY+  G + EA   F QM R    VSW ++I+ Y ++ +   A+  F +
Sbjct: 348 SGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCR 407

Query: 391 MLMSGLCPDSIAFVSVLSACS 411
           M+   +  +   + ++  ACS
Sbjct: 408 MVKEDVACNEFTYSNIFKACS 428



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 171/370 (46%), Gaps = 43/370 (11%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           I+  K+LHA ++  Q+L S  ++G  L+  Y  CG M +   VF+ +  +N++ +   I 
Sbjct: 230 IQEGKQLHAHVVKMQYL-SETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASIN 288

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            +  +  +  AL  +  M   G +P+ +T+  VL +C      + G   H  V+K G+  
Sbjct: 289 GFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMAS 348

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDV-CR- 220
            +F G  ++ MY   G + EA +    M  +   V+WN+++AGY  N + ++A++  CR 
Sbjct: 349 GVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRM 408

Query: 221 -----------------------------EMESLRIKPDADT----MASLLPSVTNT-SP 246
                                        ++ S  IK + ++     +SL+ + T   S 
Sbjct: 409 VKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSL 468

Query: 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
           EN + V   F ++ + ++VSWN +I  Y+ N  P +A+ L  +M   G +P + +  +VL
Sbjct: 469 ENAVQV---FTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVL 525

Query: 307 PACGDLSALLLGRKIHR-YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
            AC     +  G++  +  V+   +QP     + +VD+  + G L  A     ++  +  
Sbjct: 526 SACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPT 585

Query: 366 VS-WTSMISA 374
            S W  +++A
Sbjct: 586 ASIWRPLLAA 595



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 102/453 (22%), Positives = 189/453 (41%), Gaps = 81/453 (17%)

Query: 64   PSIGLKLMRTYGACGQMVDTRHVFDEITNKNV---VFFNVLIRSYVNNYLYYDALHVYKN 120
            P   +++++    C     T      IT++ +   +     ++S +N    Y    VY+N
Sbjct: 736  PGKPIRVLKNLRVCLDCYSTMKYISRITDRYIPTPLAAAAAMQSLINRANVY---RVYRN 792

Query: 121  MSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            +S H  F     TY   +   +   +L  G  +H  +V +GL    +    L++ Y +CG
Sbjct: 793  ISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECG 852

Query: 180  CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
             L  AR++ + +P+ ++  W  +    A+ G ++EAL    EM+   ++P+   + S+L 
Sbjct: 853  QLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILK 912

Query: 240  SVTNTSP----ENVLSVK-----------------------------EMFLKLDNKNLVS 266
            +  + S     EN+ +V                               +F  + +K+LV 
Sbjct: 913  ACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVV 972

Query: 267  WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
             N M++ YA +    EA+BL  +M+  G++PN +S  +++     +    +  ++ R + 
Sbjct: 973  MNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMT 1032

Query: 327  RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
               ++P                               DVVSWTS+IS +  +   ++   
Sbjct: 1033 ANGVEP-------------------------------DVVSWTSVISGFVQNFHNHEGFD 1061

Query: 387  LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH----FACL 442
             F +ML  G CP S+   S+L AC++   L  G+         Y +V  +E      + L
Sbjct: 1062 AFKEMLDQGFCPSSVTISSLLPACTNVANLRHGK-----EIHGYAMVIGVEKDVYVRSAL 1116

Query: 443  VDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
            VD+  + G + EA  L   MP E N   W SL+
Sbjct: 1117 VDMYAKCGYISEAKILFYMMP-ERNTVTWNSLI 1148



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 144/316 (45%), Gaps = 19/316 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFFNVLIRSYV 106
           +  H Q+I  + + S   +G  ++  Y   G+M +    F ++    + V +N LI  YV
Sbjct: 335 RMFHTQVI-KKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYV 393

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
            N     A+  +  M       + +TY  + KACS   SL   +QIH  ++K  ++ NL 
Sbjct: 394 LNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLH 453

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
             + L+  Y +CG L+ A +V   +   DVV+WNS++  Y+QNG   +A+ + R+M    
Sbjct: 454 VASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEG 513

Query: 227 IKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS-----WNVMIAVYANNSMPA 281
            KP + T  ++L + +++    V   +E F  +     +       + M+ +        
Sbjct: 514 NKPTSXTFLTVLSACSHSGL--VQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLE 571

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK--KLQPN-LRLEN 338
            A+D   ++    ++P A     +L AC   S L    ++  YV  K   L+PN   +  
Sbjct: 572 NALDFIKKLT---MKPTASIWRPLLAACRYNSNL----QMAEYVAEKILDLEPNDATVYV 624

Query: 339 ALVDMYAKCGSLTEAR 354
            L +MYA+ G   +A 
Sbjct: 625 TLSNMYAEVGRWADAE 640



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 3/168 (1%)

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
            +E  G  P+   V S L  CG    + LGR+ H +V +  L  +  +  +L+DMYAKCG
Sbjct: 103 HVEFGGGFPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCG 162

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
            +  A  V+D+M   D  +   +ISAY  +G    A  +F ++   G  P+   + ++L+
Sbjct: 163 EVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLA 222

Query: 409 ACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
            C     ++EG+  +  ++  QY     + +   L+ L  + G +EEA
Sbjct: 223 VCGTISAIQEGKQLHAHVVKMQYLSETAVGN--ALLTLYSKCGMMEEA 268


>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Vitis vinifera]
          Length = 545

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 189/527 (35%), Positives = 312/527 (59%), Gaps = 11/527 (2%)

Query: 22  LSTQYTLLSG-DACNDILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLKLMRTYGAC 77
           +ST  T  S  D     +D Y   + L   + LHA ++I   L        KLM  Y  C
Sbjct: 17  ISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIG-LARLTYFAAKLMSFYTEC 75

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           GQ+ + R +FD+I N N+  + VL  +      Y +AL  +  M   G  P+ +  P +L
Sbjct: 76  GQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSIL 135

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
           KAC   +    G  +H  ++K   + + +  + L+ MY KCG +++A RV + +  KD+V
Sbjct: 136 KACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLV 195

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
             N+MV+GYAQ+G   EAL++ ++M+   +KP+  +  +L+   +    ++++S  E+F 
Sbjct: 196 VMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVS--EVFR 253

Query: 258 KLD----NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
            +       ++VSW  +I+ +  N    E  D + +M   G  P++++++S+LPAC +++
Sbjct: 254 LMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVA 313

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
            L  G++IH Y     ++ ++ + +ALVDMYAKCG ++EA+ +F  M  ++ V+W S+I 
Sbjct: 314 NLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIF 373

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
            Y   G   +A+ LF++M  S    D + F +VL+ACSHAG++E G   F+ M E+Y++ 
Sbjct: 374 GYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIE 433

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           PR+EH+AC+VDLLGRAGK+ EAYDLIK MP+EP++ +WG+L+ AC  + N+++  +AA+H
Sbjct: 434 PRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEH 493

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           +F L P   G  +LLSN+YA AGRWG+  +++K M  +   K PG S
Sbjct: 494 LFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCS 540



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 169/397 (42%), Gaps = 75/397 (18%)

Query: 117 VYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMY 175
           VY+N+S H  F     TY   +   +   +L  G  +H  +V +GL    +    L++ Y
Sbjct: 13  VYRNISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFY 72

Query: 176 GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA 235
            +CG L  AR++ + +P+ ++  W  +    A+ G ++EAL    EM+   ++P+   + 
Sbjct: 73  TECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLP 132

Query: 236 SLLPSVTNTSP----ENVLSVK-----------------------------EMFLKLDNK 262
           S+L +  + S     EN+ +V                               +F  + +K
Sbjct: 133 SILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDK 192

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH 322
           +LV  N M++ YA +    EA++L  +M+  G++PN +S  +++     +    +  ++ 
Sbjct: 193 DLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVF 252

Query: 323 RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY 382
           R +    ++P                               DVVSWTS+IS +  +   +
Sbjct: 253 RLMTANGVEP-------------------------------DVVSWTSVISGFVQNFHNH 281

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH---- 438
           +    F +ML  G CP S+   S+L AC++   L  G+         Y +V  +E     
Sbjct: 282 EGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGK-----EIHGYAMVIGVEKDVYV 336

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
            + LVD+  + G + EA  L   MP E N   W SL+
Sbjct: 337 RSALVDMYAKCGYISEAKILFYMMP-ERNTVTWNSLI 372


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 182/532 (34%), Positives = 297/532 (55%), Gaps = 38/532 (7%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           +I  +   +P +   L+  Y   G + D + VFD++ +K V   N +I +++ N   YDA
Sbjct: 270 VIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDA 329

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
           L +Y  M       D +T   +L  CS   S   G  +H  V+K  +  N+   + L+ M
Sbjct: 330 LGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTM 389

Query: 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
           Y KCG  ++A  V   M  +DVV W SM+AG+ QN RF +ALD+ R ME   +K D+D M
Sbjct: 390 YYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVM 449

Query: 235 ASLLPSVTNTSPENVL-----------------------------------SVKEMFLKL 259
            S++ +      ENV                                    S + +F  +
Sbjct: 450 TSVISA--GLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSM 507

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
            NKNLV+WN MI+ Y+ N +P  +++L  Q+  HG   +++S+ +VL A   ++ALL G+
Sbjct: 508 PNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGK 567

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
            +H Y  R ++  +L++ENAL+DMY KCG L  A+ +F+ M  +++V+W SMI+ YG  G
Sbjct: 568 TLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHG 627

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
              +AV LF +M  S   PD + F++++++CSH+G++EEG   F++M  +Y + PR+EH+
Sbjct: 628 NCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHY 687

Query: 440 ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
           A +VDLLGRAG++++AY  I+ MP++ +  +W  L+ AC  + NM++G L AD++  + P
Sbjct: 688 ASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEP 747

Query: 500 NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            +   YV L N+Y +   W     +R  M  +G+KK PG S +E+ ++V + 
Sbjct: 748 ARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKNRVDVF 799



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/401 (27%), Positives = 187/401 (46%), Gaps = 22/401 (5%)

Query: 99  NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
           N  I++ V    Y  AL ++            +T+P +LK C+  ++L  G  IH S+V 
Sbjct: 24  NSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVT 83

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-----DVVTWNSMVAGYAQNGRFD 213
           +GL  + +    L+ MY KCG L  A +V + M        D+  WN ++ GY + G F+
Sbjct: 84  MGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFE 143

Query: 214 EAL-DVCREMESLRIKPDADTMASLLPSVTNTSP-------------ENVLSVKEMFLKL 259
           E L   CR  E             ++ ++    P                +    +F KL
Sbjct: 144 EGLAQFCRMQELSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKL 203

Query: 260 DNK-NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +N+ N+V+WNVMI  +  N M  ++++LY   +    +  + S      AC     L  G
Sbjct: 204 ENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFG 263

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           R++H  V +   Q +  +  +L+ MYAK GS+ +A+ VFDQ+  ++V    +MISA+  +
Sbjct: 264 RQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGN 323

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           G+ YDA+ L++KM       DS    S+LS CS  G  + GR     + ++  +   +  
Sbjct: 324 GRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKR-SMQSNVAI 382

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
            + L+ +  + G  E+A  +   M  E +   WGS++A  C
Sbjct: 383 QSALLTMYYKCGSTEDADSVFYTMK-ERDVVAWGSMIAGFC 422



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/479 (24%), Positives = 210/479 (43%), Gaps = 83/479 (17%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-----NVVFFNVLI 102
           + +HA I+    L S+P I   L+  Y  CG +     VFD+++       ++  +N +I
Sbjct: 75  RTIHASIV-TMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVI 133

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             Y     + + L  +                C ++  S     + G QIH  +++    
Sbjct: 134 DGYFKYGHFEEGLAQF----------------CRMQELSW---YMAGRQIHGYIIR---- 170

Query: 163 YNLFNGN-----GLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFD--- 213
            N+F G+      L+ MY  C    EA  +   + ++ ++V WN M+ G+ +NG ++   
Sbjct: 171 -NMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSL 229

Query: 214 ----------------------------EALDVCREME----SLRIKPDADTMASLLPSV 241
                                       E LD  R++      +  + D     SLL   
Sbjct: 230 ELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMY 289

Query: 242 TNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAIS 301
             +   +V   K++F ++ +K +   N MI+ +  N    +A+ LY +M+      ++ +
Sbjct: 290 AKSG--SVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFT 347

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           ++S+L  C  + +   GR +H  V ++ +Q N+ +++AL+ MY KCGS  +A +VF  M+
Sbjct: 348 ISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMK 407

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            +DVV+W SMI+ +  + +  DA+ LF  M   G+  DS    SV+SA      +E G  
Sbjct: 408 ERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGH- 466

Query: 422 YFKIMTEQYKLVPRIE---HFAC-LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
               +   + +   +E     AC LVD+  + G  E A  +   MP   N   W S+++
Sbjct: 467 ----LIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMP-NKNLVAWNSMIS 520



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 179/379 (47%), Gaps = 44/379 (11%)

Query: 16  PVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG 75
           PV +  +S+   LLSG  C+ ++  Y   +T+   HA++I  + + SN +I   L+  Y 
Sbjct: 342 PVDSFTISS---LLSG--CS-VVGSYDFGRTV---HAEVI-KRSMQSNVAIQSALLTMYY 391

Query: 76  ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC 135
            CG   D   VF  +  ++VV +  +I  +  N  + DAL +++ M   G   D      
Sbjct: 392 KCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTS 451

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
           V+ A  G  ++ +G  IH   +K GL+ ++F    LV MY K G  + A  V + MP+K+
Sbjct: 452 VISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKN 511

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP--------- 246
           +V WNSM++ Y+ NG  + ++++  ++       D+ ++ ++L +V++ +          
Sbjct: 512 LVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHA 571

Query: 247 -------------ENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                        EN L             + +F  +  +NLV+WN MIA Y ++    E
Sbjct: 572 YQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEE 631

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE-RKKLQPNLRLENALV 341
           AV L+ +M+     P+ ++  +++ +C     +  G  + + +     ++P +    ++V
Sbjct: 632 AVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVV 691

Query: 342 DMYAKCGSLTEARTVFDQM 360
           D+  + G L +A +    M
Sbjct: 692 DLLGRAGRLDDAYSFIRGM 710



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 5/131 (3%)

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           S N  I         ++A++L+ +     +     +  S+L  C  LS L  GR IH  +
Sbjct: 22  SINSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASI 81

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM-----RCQDVVSWTSMISAYGMSGQ 380
               LQ +  +  +L++MY KCG L  A  VFD+M        D+  W  +I  Y   G 
Sbjct: 82  VTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGH 141

Query: 381 GYDAVALFSKM 391
             + +A F +M
Sbjct: 142 FEEGLAQFCRM 152


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 186/504 (36%), Positives = 294/504 (58%), Gaps = 43/504 (8%)

Query: 90   ITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG 149
            +   NV  +N +I          +AL  + ++   G  P   ++PC +K+CS    L+ G
Sbjct: 1975 VDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSG 2034

Query: 150  LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQN 209
               H      G + +LF  + L+ MY KCG LK+AR + +++P ++VV+W SM+ GY QN
Sbjct: 2035 RMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQN 2094

Query: 210  GRFDEAL----DVCREMESLR----IKPDADTMASLLPSVTNTSPENV------------ 249
             + D AL    D   E   +     +  D+  M S+L + +  S + +            
Sbjct: 2095 EQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKG 2154

Query: 250  ---------------------LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
                                 L  K++F  ++ K+ +SWN MIAVYA + +  EA++++ 
Sbjct: 2155 FDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFH 2214

Query: 289  QMEVH-GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
             M  H G+  NA+++++VL AC    AL  G+ IH  V +  L+ N+ +  +++DMY KC
Sbjct: 2215 GMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKC 2274

Query: 348  GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
            G +  A+  FD+M+ ++V SWT+M++ YGM G+  +A+ +F KM+ +G+ P+ I FVSVL
Sbjct: 2275 GRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVL 2334

Query: 408  SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
            +ACSHAGL+EEG ++F  M  +Y + P IEH+ C+VDL GRAG + EAY+LIK+M M+P+
Sbjct: 2335 AACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPD 2394

Query: 468  ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527
              +WGSL+ AC ++ N+D+G +AA  +F L P+  GYYVLLSN+YA AGRW DV+R+R  
Sbjct: 2395 FVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRML 2454

Query: 528  MNSKGIKKMPGAS-VEMNDQVQII 550
            M ++ + K PG S VE+  +V + 
Sbjct: 2455 MKNRQLVKPPGFSLVELKGRVHVF 2478



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 136/426 (31%), Positives = 227/426 (53%), Gaps = 38/426 (8%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +L    + K L+++HA+II    L ++  +  KL+  Y   G++     +F +I N    
Sbjct: 33  LLQNCKNFKHLRQIHAKII-RSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTF 91

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +N++IR+   N L   AL +YKNM   G   D +T+P V+KAC+   S+ +G  +H S+
Sbjct: 92  TWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSL 151

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           +K G   ++F  N L+  Y KCG  + A +V   M  ++VV+W ++++G    G   EA 
Sbjct: 152 IKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA- 210

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                               + +F ++ +KN+VSW  MI  Y  
Sbjct: 211 ------------------------------------RRIFDEIPSKNVVSWTAMINGYIR 234

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N  P EA++L+ +M+   I PN  ++ S++ AC ++  L LGR IH Y  +  ++  + L
Sbjct: 235 NQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYL 294

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
             AL+DMY+KCGS+ +A  VF+ M  + + +W SMI++ G+ G G +A+ LFS+M    +
Sbjct: 295 GTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNV 354

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PD+I F+ VL AC H   ++EG  YF  MT+ Y + P  EH+ C+ +L  R+  ++EA+
Sbjct: 355 KPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAF 414

Query: 457 DLIKQM 462
              K++
Sbjct: 415 KSTKEV 420



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 164/349 (46%), Gaps = 44/349 (12%)

Query: 70   LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-------- 121
            L+  Y  CGQ+ D R +FDEI  +NVV +  +I  YV N    +AL ++K+         
Sbjct: 2056 LIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVE 2115

Query: 122  SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              +    D      VL ACS  +   +   +H  VVK G D ++  GN L+  Y KCG  
Sbjct: 2116 DGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQP 2175

Query: 182  KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPDADTMASLLPS 240
              +++V + M  KD ++WNSM+A YAQ+G   EAL+V   M   + ++ +A T++++L +
Sbjct: 2176 LVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLA 2235

Query: 241  VTNTSP---------------------------------ENVLSVKEMFLKLDNKNLVSW 267
              +                                      V   K+ F ++  KN+ SW
Sbjct: 2236 CAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSW 2295

Query: 268  NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
              M+A Y  +    EA+D++ +M   G++PN I+  SVL AC     +  G      ++ 
Sbjct: 2296 TAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKH 2355

Query: 328  K-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
            K  ++P +     +VD++ + G L EA  +  +M+ + D V W S++ A
Sbjct: 2356 KYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGA 2404



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 133/260 (51%), Gaps = 7/260 (2%)

Query: 54   IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
             ++ +    +  +G  LM  Y  CGQ + ++ VFD +  K+ + +N +I  Y  + L  +
Sbjct: 2149 FVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGE 2208

Query: 114  ALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV 172
            AL V+  M  H G   +  T   VL AC+ + +L  G  IH  V+K+ L+YN+  G  ++
Sbjct: 2209 ALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSII 2268

Query: 173  AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
             MY KCG ++ A++  + M  K+V +W +MVAGY  +GR  EALD+  +M    +KP+  
Sbjct: 2269 DMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYI 2328

Query: 233  TMASLLPSVTNTS--PENVLSVKEMFLKLD-NKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
            T  S+L + ++     E       M  K D    +  +  M+ ++       EA +L  +
Sbjct: 2329 TFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKR 2388

Query: 290  MEVHGIEPNAISVASVLPAC 309
            M+   ++P+ +   S+L AC
Sbjct: 2389 MK---MKPDFVVWGSLLGAC 2405



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 120/258 (46%), Gaps = 41/258 (15%)

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F ++ N    +WN++I     N +  +A+ LY  M   GI  +  +   V+ AC +  +
Sbjct: 81  LFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLS 140

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG-------------------------- 348
           + LG+ +H  + +     ++ ++N L+D Y KCG                          
Sbjct: 141 IDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISG 200

Query: 349 -----SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
                 L EAR +FD++  ++VVSWT+MI+ Y  + Q  +A+ LF +M    + P+    
Sbjct: 201 LISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTM 260

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE----HFACLVDLLGRAGKVEEAYDLI 459
           VS++ AC+  G+L  GR         Y +   IE        L+D+  + G +++A ++ 
Sbjct: 261 VSLIKACTEMGILTLGR-----GIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVF 315

Query: 460 KQMPMEPNERIWGSLVAA 477
           + MP + +   W S++ +
Sbjct: 316 ETMPRK-SLPTWNSMITS 332



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 97/190 (51%), Gaps = 8/190 (4%)

Query: 230  DADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
            D  T  S+L  V +   ++       +  +D  N+ SWN +IA  A      EA+  +  
Sbjct: 1946 DGITYNSILFGVPSGREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSS 2005

Query: 290  MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
            +   G+ P   S    + +C  L  L+ GR  H+       + +L + +AL+DMY+KCG 
Sbjct: 2006 LRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQ 2065

Query: 350  LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM--------SGLCPDSI 401
            L +AR +FD++  ++VVSWTSMI+ Y  + Q  +A+ LF   L         + +  DS+
Sbjct: 2066 LKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSV 2125

Query: 402  AFVSVLSACS 411
              VSVLSACS
Sbjct: 2126 VMVSVLSACS 2135



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 3/164 (1%)

Query: 44   IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
            ++  K +H Q+I    L  N  +G  ++  Y  CG++   +  FD +  KNV  +  ++ 
Sbjct: 2242 LRAGKCIHDQVI-KMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVA 2300

Query: 104  SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV-KVGLD 162
             Y  +    +AL ++  M   G  P+  T+  VL ACS +  +  G     ++  K  ++
Sbjct: 2301 GYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIE 2360

Query: 163  YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAG 205
              + +   +V ++G+ GCL EA  ++  M  K D V W S++  
Sbjct: 2361 PGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGA 2404



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 81/225 (36%), Gaps = 71/225 (31%)

Query: 76  ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC 135
           +CG + + R +FDEI +KNVV +  +I  Y+ N    +AL ++K M      P+ YT   
Sbjct: 203 SCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVS 262

Query: 136 VLKACSGSNSLLVGLQIH------------------------CSVVKVGLDY-------N 164
           ++KAC+    L +G  IH                        C  +K  ++        +
Sbjct: 263 LIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKS 322

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMP----SKDVVT---------------------- 198
           L   N ++   G  G  +EA  + ++M       D +T                      
Sbjct: 323 LPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFT 382

Query: 199 --------------WNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
                         +  M   YA++   DEA    +E+ SL   P
Sbjct: 383 RMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEVGSLANSP 427


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 211/603 (34%), Positives = 320/603 (53%), Gaps = 73/603 (12%)

Query: 22  LSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMV 81
           L + +TL S       L     +  LK++HAQI+ ++ L  + S+ +KL+ +  A    +
Sbjct: 20  LHSHHTLFSA------LSSATSLTHLKQVHAQILRSK-LDRSTSLLVKLVISSCALSSSL 72

Query: 82  D-TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC 140
           D    VF+ I        N  +R    +      L VY+ M   G   D +++P +LKA 
Sbjct: 73  DYALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKAL 132

Query: 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWN 200
           S   SL+ GL+IH    K+G D + F   GLV MY  CG + EAR + + M  +DVVTW+
Sbjct: 133 SRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWS 192

Query: 201 SMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS------------VTNTSPEN 248
            M+ GY Q+G F++AL +  EM++  ++PD   ++++L +            + +   EN
Sbjct: 193 IMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMEN 252

Query: 249 VLSVK---------------------EMFLKLDNKNLVS--------------------- 266
            + V                       +F K+  KNLV+                     
Sbjct: 253 NIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVF 312

Query: 267 ----------WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
                     W+ MI+ YA +  P EA++L+ +M+  GI+P+ +++ SV+ AC  L AL 
Sbjct: 313 NQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALD 372

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
             + IH +V++      L + NAL++MYAKCGSL  AR +FD+M  ++V+SWT MISA+ 
Sbjct: 373 QAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFA 432

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
           M G    A+  F +M    + P+ I FV VL ACSHAGL+EEGR  F  M  ++ + P+ 
Sbjct: 433 MHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKH 492

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
            H+ C+VDL GRA  + EA +L++ MP+ PN  IWGSL+AAC ++  +++G  AA  +  
Sbjct: 493 VHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLE 552

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLR 555
           L P+  G +V LSNIYAKA RW DV +VRK M  KGI K  G S  E+N+++    +  R
Sbjct: 553 LDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADR 612

Query: 556 SSK 558
           S K
Sbjct: 613 SHK 615


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 181/510 (35%), Positives = 289/510 (56%), Gaps = 35/510 (6%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y  C    D   +FDE+  ++V  +N +I  Y  +     AL +++ M V GF PD  T 
Sbjct: 343 YAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTL 402

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             V+ +C+    L  G +IH  +V+ G   + F  + LV MYGKCGCL+ A+ V   +  
Sbjct: 403 TTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQR 462

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT--------- 244
           K+VV+WNSM+AGY+  G     +++ R M+   I+P   T++S+L + + +         
Sbjct: 463 KNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFI 522

Query: 245 ------------------------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                                      N+ S + +F  +   N+VSWNVMI+ Y      
Sbjct: 523 HGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSY 582

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            EA+ ++  M   G++P+AI+  SVLPAC  L+ L  G++IH ++   KL+ N  +  AL
Sbjct: 583 LEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGAL 642

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +DMYAKCG++ EA  +F+Q+  +D VSWTSMI+AYG  GQ ++A+ LF KM  S   PD 
Sbjct: 643 LDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDK 702

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           + F+++LSACSHAGL++EG YYF  M  +Y   P +EH++CL+DLLGR G++ EAY++++
Sbjct: 703 VTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQ 762

Query: 461 QMP-MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519
           + P +  +  +  +L +AC L+  +D+G      +    P+    Y++LSN+YA   +W 
Sbjct: 763 RTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWD 822

Query: 520 DVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           +V++VR  +   G+KK PG S +E+  ++ 
Sbjct: 823 EVRKVRLKIKELGLKKNPGCSWIEVGKRIH 852



 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 144/466 (30%), Positives = 244/466 (52%), Gaps = 37/466 (7%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFFNVLIRSY 105
           L KL  Q I++  L +N ++   L+  Y +C      + VF  I N  ++  +N L+ + 
Sbjct: 213 LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAAC 272

Query: 106 VNNYLYYDALHVYKNMSVHGF-DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
             N+++ + L V+  +    +  PD +TYP VLKACSG   +  G  +H  V+K G   +
Sbjct: 273 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMD 332

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
           +   +  V MY KC   ++A ++ ++MP +DV +WN++++ Y Q+G+ ++AL++  EM+ 
Sbjct: 333 VVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKV 392

Query: 225 LRIKPDADTMASLLPSVT---------NTSPENVLS------------------------ 251
              KPD+ T+ +++ S               E V S                        
Sbjct: 393 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM 452

Query: 252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
            KE+F ++  KN+VSWN MIA Y+        ++L+ +M+  GI P   +++S+L AC  
Sbjct: 453 AKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSR 512

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
              L LG+ IH Y+ R +++ ++ + ++L+D+Y KCG++  A  VF  M   +VVSW  M
Sbjct: 513 SVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVM 572

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           IS Y   G   +A+ +F+ M  +G+ PD+I F SVL ACS   +LE+G+     + E  K
Sbjct: 573 ISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIES-K 631

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           L         L+D+  + G V+EA  +  Q+P E +   W S++AA
Sbjct: 632 LEINEVVMGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMIAA 676



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 193/400 (48%), Gaps = 56/400 (14%)

Query: 135 CVLKACSGSN-SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
           C+ +  +GS    L+G  IH  +V +GL  N+     L+ +Y  C   + A+ V   + +
Sbjct: 199 CLARVTAGSALEELLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIEN 258

Query: 194 K-DVVTWNSMVAGYAQNGRFDEALDVC-REMESLRIKPDADTMASLLPSVTNT------- 244
             D+  WN ++A   +N  F E L+V  R +    +KPDA T  S+L + +         
Sbjct: 259 PLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGK 318

Query: 245 -------------------------SPENVLS-VKEMFLKLDNKNLVSWNVMIAVYANNS 278
                                    +  NV     ++F ++  +++ SWN +I+ Y  + 
Sbjct: 319 MVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDG 378

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
            P +A++L+ +M+V G +P+++++ +V+ +C  L  L  G++IH  + R     +  + +
Sbjct: 379 QPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSS 438

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           ALVDMY KCG L  A+ VF+Q++ ++VVSW SMI+ Y + G     + LF +M   G+ P
Sbjct: 439 ALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRP 498

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH----FACLVDLLGRAGKVEE 454
                 S+L ACS +  L+ G++        Y +  R+E      + L+DL  + G +  
Sbjct: 499 TLTTLSSILMACSRSVNLQLGKF-----IHGYIIRNRVEADIFVNSSLIDLYFKCGNIGS 553

Query: 455 AYDLIKQMPMEPNERIW----------GSLVAACCLYSNM 484
           A ++ + MP + N   W          GS + A  ++++M
Sbjct: 554 AENVFQNMP-KTNVVSWNVMISGYVKVGSYLEALVIFTDM 592



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 149/313 (47%), Gaps = 9/313 (2%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +H  II N+ + ++  +   L+  Y  CG +    +VF  +   NVV +NV+I  YV 
Sbjct: 520 KFIHGYIIRNR-VEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVK 578

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
              Y +AL ++ +M   G  PD  T+  VL ACS    L  G +IH  +++  L+ N   
Sbjct: 579 VGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVV 638

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L+ MY KCG + EA  + N +P +D V+W SM+A Y  +G+  EAL +  +M+    
Sbjct: 639 MGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDA 698

Query: 228 KPDADTMASLLPSVTNTS--PENVLSVKEMFLKLDNKNLVS-WNVMIAVYANNSMPAEAV 284
           KPD  T  ++L + ++     E      +M  +   K  V  ++ +I +        EA 
Sbjct: 699 KPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAY 758

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR-YVERKKLQPNLRLENALVDM 343
           ++ LQ     I  +   ++++  AC     L LG +I R  +E+    P+  +   L +M
Sbjct: 759 EI-LQ-RTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYI--ILSNM 814

Query: 344 YAKCGSLTEARTV 356
           YA      E R V
Sbjct: 815 YASVKKWDEVRKV 827


>gi|356541211|ref|XP_003539074.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Glycine max]
          Length = 548

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 192/545 (35%), Positives = 311/545 (57%), Gaps = 28/545 (5%)

Query: 6   LLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTL---KKLHAQIIINQHLHS 62
           ++ RHF  ++P               ++  +++D Y   + L   KKLHA ++ N     
Sbjct: 17  IISRHFFRSEP---------------ESYAELIDMYARDRALHAGKKLHAHLVTNGFARF 61

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM- 121
           N  +   L+  Y  CGQ+   R +FD+I   NV  +  LI S      Y  AL V+  M 
Sbjct: 62  N-VVASNLVSFYTCCGQLSHARKLFDKIPTTNVRRWIALIGSCARCGFYDHALAVFSEMQ 120

Query: 122 SVHGFDPD-CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           +V G  P+  +  P VLKAC      + G +IH  ++K   + + F  + L+ MY KC  
Sbjct: 121 AVQGLTPNYVFVIPSVLKACGHVGDRITGEKIHGFILKCSFELDSFVSSSLIVMYSKCAK 180

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           +++AR+V + M  KD V  N++VAGY Q G  +EAL +   M+ + +KP+  T  SL+  
Sbjct: 181 VEDARKVFDGMTVKDTVALNAVVAGYVQQGAANEALGLVESMKLMGLKPNVVTWNSLISG 240

Query: 241 VTNTSPENVLS--VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
            +    +  +S   + M       ++VSW  +I+ +  N    EA D + QM  HG  P 
Sbjct: 241 FSQKGDQGRVSEIFRLMIADGVEPDVVSWTSVISGFVQNFRNKEAFDTFKQMLSHGFHPT 300

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
           + +++++LPAC   + + +GR+IH Y     ++ ++ + +ALVDMYAKCG ++EAR +F 
Sbjct: 301 SATISALLPACATAARVSVGREIHGYALVTGVEGDIYVRSALVDMYAKCGFISEARNLFS 360

Query: 359 QMRCQDVVSWTSMISAYGMSGQGY--DAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGL 415
           +M  ++ V+W S+I  +G +  GY  +A+ LF++M   G+   D + F + L+ACSH G 
Sbjct: 361 RMPEKNTVTWNSII--FGFANHGYCEEAIELFNQMEKEGVAKLDHLTFTAALTACSHVGD 418

Query: 416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
            E G+  FKIM E+Y + PR+EH+AC+VDLLGRAGK+ EAY +IK MP+EP+  +WG+L+
Sbjct: 419 FELGQRLFKIMQEKYSIEPRLEHYACMVDLLGRAGKLHEAYCMIKTMPIEPDLFVWGALL 478

Query: 476 AACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK 535
           AAC  + ++++  +AA H+  L P  +   +LLS++YA AG+WG  +RV+K +    ++K
Sbjct: 479 AACRNHRHVELAEVAAMHLMELEPESAANPLLLSSVYADAGKWGKFERVKKRIKKGKLRK 538

Query: 536 MPGAS 540
           + G S
Sbjct: 539 LQGLS 543


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  351 bits (900), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 193/539 (35%), Positives = 311/539 (57%), Gaps = 35/539 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D  T +++H   ++   L S  ++G  L+  YG CG + D+R VFDEI+ +N V +N +I
Sbjct: 124 DGVTGRQIHC-YVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAII 182

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            S        DAL +++ M   G  P+  T+  +L           G +IH   ++ GL+
Sbjct: 183 TSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLE 242

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++F  N L+ MY K G   +A  V N +  K++V+WN+MVA +AQN     A+D+ R+M
Sbjct: 243 SDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQM 302

Query: 223 ESLRIKPDADTMASLLPS---------------------------VTNTSPE-----NVL 250
           ++    P++ T  ++LP+                           V+N   +       L
Sbjct: 303 QADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCL 362

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
           ++     K+  ++ VS+N++I  Y+  +  +E++ L+L+M + G++ + +S   V+ AC 
Sbjct: 363 NLARRVFKISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACA 422

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           +L+AL  G+++H    RK L  +L + NAL+D Y KCG +  A  VF Q+  +D  SW S
Sbjct: 423 NLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNS 482

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           MI  YGM G+   A+ LF  M   G+  DS+++++VLSACSH GL+EEG+ YF+ M  Q 
Sbjct: 483 MILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQ- 541

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            + P   H+AC+VDLLGRAG +EEA  LI+ +P+EP+  +WG+L+ AC ++  +++   A
Sbjct: 542 NIKPTQMHYACMVDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHGYIELAHWA 601

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           A+H+F L P  SGYY +LSN+YA+AG+W +  +VRK M S+G KK PG S V++++QV 
Sbjct: 602 AEHLFKLKPQHSGYYSVLSNMYAEAGKWDEANQVRKLMKSRGAKKNPGCSWVQIDNQVH 660



 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 145/490 (29%), Positives = 252/490 (51%), Gaps = 42/490 (8%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC D L     ++  +++H  ++      S+  +G  L+  YG CG + D + VFDE+  
Sbjct: 16  ACADSLS----VQKGREIHG-VVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRVFDEMLE 70

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQ 151
           ++VV +N +I  +  +  Y +A+H++  M++  GF P+  +   VL  C+G    + G Q
Sbjct: 71  RDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVTGRQ 130

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           IHC VVK GLD  +  GN LV +YGKCG +K++RRV +++  ++ V+WN+++   A   R
Sbjct: 131 IHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYLER 190

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTN---------------------------- 243
             +AL++ R M    +KP++ T +S+LP +                              
Sbjct: 191 NQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANA 250

Query: 244 -----TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                      L    +F ++  KN+VSWN M+A +A N +   AVDL  QM+  G  PN
Sbjct: 251 LIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPN 310

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
           +++  +VLPAC  +  L  G++IH    R     +L + NAL DMYAKCG L  AR VF 
Sbjct: 311 SVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVF- 369

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
           ++  +D VS+  +I  Y  +    +++ LF +M + G+  D ++++ V+SAC++   L++
Sbjct: 370 KISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQ 429

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           G+    +   ++ L   +     L+D   + G+++ A  + +Q+P       W S++   
Sbjct: 430 GKEVHGLAVRKH-LHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTAS-WNSMILGY 487

Query: 479 CLYSNMDIGI 488
            +   + I I
Sbjct: 488 GMLGELTIAI 497



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 182/331 (54%), Gaps = 36/331 (10%)

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G   D +T+P VLKAC+ S S+  G +IH  V K+G D ++F GN L+  YG CG LK+ 
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR--IKPDADTMASLLPS-- 240
           +RV ++M  +DVV+WNS++  ++ +G + EA+ +  EM +LR   +P+  ++ S+LP   
Sbjct: 62  KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEM-NLRSGFRPNMVSIVSVLPVCA 120

Query: 241 --------------VTNTSPENVLSV-----------------KEMFLKLDNKNLVSWNV 269
                         V  T  ++ ++V                 + +F ++  +N VSWN 
Sbjct: 121 GLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNA 180

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           +I   A      +A++++  M   G++PN+++ +S+LP   +L     G++IH +  R  
Sbjct: 181 IITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFG 240

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           L+ ++ + NAL+DMYAK G   +A  VF+Q+  +++VSW +M++ +  +     AV L  
Sbjct: 241 LESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVR 300

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           +M   G  P+S+ F +VL AC+  G L  G+
Sbjct: 301 QMQADGEIPNSVTFTNVLPACARIGFLRPGK 331



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 160/294 (54%), Gaps = 10/294 (3%)

Query: 252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVASVLPACG 310
           VK +F ++  +++VSWN +I V++ +   AEA+ L+ +M +  G  PN +S+ SVLP C 
Sbjct: 61  VKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCA 120

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
            L   + GR+IH YV +  L   + + NALVD+Y KCG + ++R VFD++  ++ VSW +
Sbjct: 121 GLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNA 180

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           +I++     +  DA+ +F  M+  G+ P+S+ F S+L       L + G+      + ++
Sbjct: 181 IITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHG-FSLRF 239

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            L   I     L+D+  ++G+  +A ++  Q+  E N   W ++VA    ++   + + A
Sbjct: 240 GLESDIFVANALIDMYAKSGRSLQASNVFNQIG-EKNIVSWNAMVAN---FAQNRLELAA 295

Query: 491 ADHIFHL-APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEM 543
            D +  + A  +    V  +N+     R G + R  K ++++ I+   G+SV++
Sbjct: 296 VDLVRQMQADGEIPNSVTFTNVLPACARIGFL-RPGKEIHARAIR--TGSSVDL 346



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 7/176 (3%)

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           VL AC D  ++  GR+IH  V +     ++ + N L+  Y  CG L + + VFD+M  +D
Sbjct: 13  VLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRVFDEMLERD 72

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKM-LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           VVSW S+I  + + G   +A+ LF +M L SG  P+ ++ VSVL  C+    LE+G    
Sbjct: 73  VVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAG---LEDGVTGR 129

Query: 424 KIMTEQYK--LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           +I     K  L  ++     LVD+ G+ G V+++  +  ++  E N   W +++ +
Sbjct: 130 QIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEIS-ERNGVSWNAIITS 184


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  351 bits (900), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 199/583 (34%), Positives = 312/583 (53%), Gaps = 50/583 (8%)

Query: 3   AVVLLCR-HFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLH 61
           A+  LCR  +   KPV   V +  Y L     C D      D+K  K++H Q+I N    
Sbjct: 131 ALAFLCRMRYDDVKPV---VYNFTYLL---KVCGD----NADLKRGKEIHGQLITNS-FA 179

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           +N      ++  Y  C Q+ D   +FD +  +++V +N +I  +  N     AL +   M
Sbjct: 180 ANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRM 239

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              G  PD  T   VL A +    L+VG  IH   ++ G    +     L  MY KCG +
Sbjct: 240 QDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSV 299

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM------------------- 222
           + AR + + M  K VV+WNSM+ GY QNG  ++A+ V  +M                   
Sbjct: 300 ETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHAC 359

Query: 223 ----------------ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS 266
                           + L +  D   M SL+   +     ++ S  ++F  L+ +  VS
Sbjct: 360 ADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIAS--DIFNNLNGRTHVS 417

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           WN MI  YA N   +EA++ + +M+  G++P++ ++ SV+PA  +LS     + IH  + 
Sbjct: 418 WNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLII 477

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           R  L  N+ +  ALVDMY+KCG++  AR +FD +  + V++W +MI  YG  G G  A+ 
Sbjct: 478 RSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALD 537

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           LF KM    + P+ I ++SV+SACSH+GL++EG  +FK M + Y L P ++H+  +VDLL
Sbjct: 538 LFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLL 597

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
           GRAG+++EA+D I+ MP+ P   ++G+++ AC ++ N+++G  AA  +F L P++ GY+V
Sbjct: 598 GRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHV 657

Query: 507 LLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           LL+NIYA   +W  V  VRK M  KG+KK PG S VE+ ++V 
Sbjct: 658 LLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVH 700



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 142/572 (24%), Positives = 262/572 (45%), Gaps = 87/572 (15%)

Query: 46  TLKKLHAQI--IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++K+LH  I  +I   L++      KL+  +   G + +   VF+ I +K    ++ +++
Sbjct: 61  SMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLK 120

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            Y  N     AL     M      P  Y +  +LK C  +  L  G +IH  ++      
Sbjct: 121 GYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAA 180

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           N+F   G+V MY KC  + +A ++ + MP +D+V+WN+++AG++QNG   +AL++   M+
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 224 SLRIKPDADTMASLLPSVTN---------------------------------TSPENVL 250
               +PD+ T+ ++LP+  +                                 +   +V 
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
           + + +F  +D K +VSWN M+  Y  N  P +A+ ++ +M   GI+P  +++   L AC 
Sbjct: 301 TARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACA 360

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           DL  L  G+ +H++V++  L  ++ + N+L+ MY+KC  +  A  +F+ +  +  VSW +
Sbjct: 361 DLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNA 420

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV------LSACSHA----------- 413
           MI  Y  +G+  +A+  FS+M   G+ PDS   VSV      LS   HA           
Sbjct: 421 MILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC 480

Query: 414 ------------------GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
                             G +   R  F ++++++ +      +  ++D  G  G    A
Sbjct: 481 LDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVIT-----WNAMIDGYGTHGLGRAA 535

Query: 456 YDLIKQM---PMEPNERIWGSLVAACCLYSNMDIGIL---AADHIFHLAPNQSGYYVLLS 509
            DL  +M    +EPN+  + S+++AC     +D G+    +    + L P+   Y  ++ 
Sbjct: 536 LDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVD 595

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
            +    GR G +K    F+ +  I   PG +V
Sbjct: 596 LL----GRAGRIKEAWDFIENMPIS--PGITV 621


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 192/552 (34%), Positives = 304/552 (55%), Gaps = 47/552 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVF-DEITNKNVVFFNVLIRSYV 106
           K+LH+ +I      S PSI   L+  Y  CGQM +   VF D    +NV  +N +I  +V
Sbjct: 31  KQLHSLMITYGFSPSPPSI-TSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFV 89

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
           +N L       YK M + G  PD YT+PCV++ C     ++   +IH  ++K+GL+ ++F
Sbjct: 90  SNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCC---EVMEVKKIHGCLLKMGLELDVF 146

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
            G+ LV  Y K G +++A++V  ++  +DVV WN+M+ GYA+ G  DEAL+V R M    
Sbjct: 147 VGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKG 206

Query: 227 IKPDADTMASLLP---------------------------SVTNTSPENVLSVKEM---- 255
           + P   T+  +L                            SV+N   +     K +    
Sbjct: 207 VAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDAL 266

Query: 256 --FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
             F  ++ K++ SWN +I+V+         + L+ +M   GI P+ +++ +VLPAC  L+
Sbjct: 267 IIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLA 326

Query: 314 ALLLGRKIHRYV--------ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           AL+ GR+IH Y+        +      NL + NA++DMYAKCGS+  A  +FD M  +DV
Sbjct: 327 ALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDV 386

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
            SW  MI  YGM G   +A+ +FS+M  +   P+ +  V VLSAC+HAG +  GR +   
Sbjct: 387 ASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQ 446

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M   + ++P IEH+ C++D+LGRAG +E+AY+++++MP++ N  +W +L+ AC L+ N +
Sbjct: 447 MESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAE 506

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMN 544
           +  +AA  +  L P   G YVL+SN+Y   GR+ +V  VRK M  + +KK PG S +E+ 
Sbjct: 507 LAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNVKKTPGCSWIELK 566

Query: 545 DQVQIIALPLRS 556
           D V +     R+
Sbjct: 567 DGVHVFRTGDRT 578



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 149/315 (47%), Gaps = 31/315 (9%)

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND-MPSKD 195
           L++C+   +L  G Q+H  ++  G   +  +   L+ MY KCG + EA  V  D    ++
Sbjct: 18  LQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERN 77

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL----------------- 238
           V  +N++++G+  NG   +     ++M    + PD  T   ++                 
Sbjct: 78  VFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKKIHGCLL 137

Query: 239 -----------PSVTNTSPEN--VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285
                       ++ NT  +N  +   +++F +L  +++V WN MI  YA      EA++
Sbjct: 138 KMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALE 197

Query: 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
           ++ +M V G+ P+  ++  +L        L  G+ +H  V +      + + NAL+DMY 
Sbjct: 198 VFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYG 257

Query: 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
           KC  + +A  +F+ +  +D+ SW S+IS +   G     + LF KML SG+ PD +   +
Sbjct: 258 KCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITT 317

Query: 406 VLSACSHAGLLEEGR 420
           VL ACSH   L  GR
Sbjct: 318 VLPACSHLAALMHGR 332



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 107/240 (44%), Gaps = 13/240 (5%)

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           N     + L +C D   L  G+++H  +      P+     +L++MY+KCG + EA  VF
Sbjct: 10  NVTKCVAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVF 69

Query: 358 -DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL 416
            D    ++V ++ ++IS +  +G        + KM + G+ PD   F  V+  C     +
Sbjct: 70  YDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEV 129

Query: 417 EEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
           +      KI     K+   ++ F  + LV+   + G +E+A  +  ++ +  +  +W ++
Sbjct: 130 K------KIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIR-DVVLWNAM 182

Query: 475 VAACCLYSNMD--IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532
           +        +D  + +    H+  +AP++     +LS ++A  G   + K V   +   G
Sbjct: 183 INGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILS-VFASRGDLDNGKTVHGIVMKMG 241


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 187/523 (35%), Positives = 297/523 (56%), Gaps = 52/523 (9%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH---VFDEITNK 93
           IL    +I  LK +HA +I     +S       + +    C +  D  +   +F ++   
Sbjct: 20  ILQNCKNIVELKSIHAHVI----KYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEP 75

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNM-------SVHGFDPDCYTYPCVLKACSGSNSL 146
           N   +N +IR++ +N +Y  A+  YK M       S +   PD +T+P V+K+CSG    
Sbjct: 76  NGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCY 135

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY 206
            +G Q+H  + K G   N+   N L+ MY KC  L +A +V + M  +D ++WNS+++G+
Sbjct: 136 NLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGH 195

Query: 207 AQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS 266
              G+  +A                  +  L+P  T                     +VS
Sbjct: 196 VGVGQMRKA----------------GALFDLMPYRT---------------------IVS 218

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           W  MI+ Y      A+A+ ++ QM++ G+EP+ IS+ SVLPAC  L AL +G+ IH Y +
Sbjct: 219 WTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCD 278

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           R  L     + NAL++MY+KCG + +A  +FDQM   DV+SW++MI      G+  +A+ 
Sbjct: 279 RNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIE 338

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           LF +M  + + P+ I F+ +LSAC+HAG   EG  YF  M++ Y + P +EH+ CLVD+L
Sbjct: 339 LFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDIL 398

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
           GRAG++ +A D+I++MPM+P+ +IWGSL+++C  +SN+DI I+A +H+  L P+ +G YV
Sbjct: 399 GRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNLDIAIIAMEHLEELEPDDTGNYV 458

Query: 507 LLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           LLSNIYA   +W  V R+RK + SK +KK PG+S +++N+ VQ
Sbjct: 459 LLSNIYADLAKWDGVSRMRKLIKSKSMKKTPGSSLIDINNVVQ 501



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 2/214 (0%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N ++D Y    +L  L A  + +  +  +      ++  +   GQM     +FD +  + 
Sbjct: 158 NALIDMYTKCASL--LDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRT 215

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
           +V +  +I  Y     Y DAL+V++ M + G +PD  +   VL AC+   +L VG  IH 
Sbjct: 216 IVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHM 275

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
              + GL       N L+ MY KCGC+ +A ++ + M   DV++W++M+ G A +G+  E
Sbjct: 276 YCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKARE 335

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
           A+++ + M+  +I+P+  T   LL +  +    N
Sbjct: 336 AIELFKRMKKAKIEPNGITFLGLLSACAHAGFWN 369


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  350 bits (899), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 173/486 (35%), Positives = 292/486 (60%), Gaps = 38/486 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEI----TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           ++  Y   G + + + +F E+       N+V +N ++  + NN  Y +A+ +++ M V G
Sbjct: 176 MIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQG 235

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           F PD  T  CVL A      ++VG Q+H  V+K GL  + F  + ++ MYGKCGC+KE  
Sbjct: 236 FWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMS 295

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           RV +++   ++ + N+ + G ++NG  D AL+V  + +  +++                 
Sbjct: 296 RVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKME----------------- 338

Query: 246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                            N+V+W  +IA  + N    EA++L+  M+ +G+EPNA+++ S+
Sbjct: 339 ----------------LNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSL 382

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           +PACG++SAL+ G++IH +  R+ +  ++ + +AL+DMYAKCG +  AR  FD+M   ++
Sbjct: 383 IPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNL 442

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           VSW +++  Y M G+  + + +F  ML SG  PD + F  VLSAC+  GL EEG   +  
Sbjct: 443 VSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNS 502

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M+E++ + P++EH+ACLV LL R GK+EEAY +IK+MP EP+  +WG+L+++C +++N+ 
Sbjct: 503 MSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLS 562

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMN 544
           +G +AA+ +F L P   G Y+LLSNIYA  G W +  R+R+ M SKG++K PG S +E+ 
Sbjct: 563 LGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVG 622

Query: 545 DQVQII 550
            +V ++
Sbjct: 623 HKVHML 628



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 185/400 (46%), Gaps = 69/400 (17%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           F+ LI ++  ++ +   L  + ++      PD +  P  +K+C+   +L  G Q+H    
Sbjct: 72  FSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAA 131

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
             G   +    + L  MY KC  + +AR++ + MP +DVV W++M+AGY++ G  +EA +
Sbjct: 132 ASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKE 191

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
           +  EM S  ++P                                 NLVSWN M+A + NN
Sbjct: 192 LFGEMRSGGVEP---------------------------------NLVSWNGMLAGFGNN 218

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
               EAV ++  M V G  P+  +V+ VLPA G L  +++G ++H YV ++ L  +  + 
Sbjct: 219 GFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVV 278

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQD--------------------------------- 364
           +A++DMY KCG + E   VFD++   +                                 
Sbjct: 279 SAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKME 338

Query: 365 --VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
             VV+WTS+I++   +G+  +A+ LF  M   G+ P+++   S++ AC +   L  G+  
Sbjct: 339 LNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGK-E 397

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
               + +  +   +   + L+D+  + G+++ A     +M
Sbjct: 398 IHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKM 437



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 101/209 (48%), Gaps = 7/209 (3%)

Query: 225 LRIKPDADTMASLLPSVTN----TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
           L +  D     SLL    N    ++P+  L++      L +  L S++ +I  +A +   
Sbjct: 29  LNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSS---HLPHPTLFSFSSLIHAFARSHHF 85

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
              +  +  +    + P+A  + S + +C  L AL  G+++H +        +  + ++L
Sbjct: 86  PHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSL 145

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
             MY KC  + +AR +FD+M  +DVV W++MI+ Y   G   +A  LF +M   G+ P+ 
Sbjct: 146 THMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNL 205

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           +++  +L+   + G  +E    F++M  Q
Sbjct: 206 VSWNGMLAGFGNNGFYDEAVGMFRMMLVQ 234


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 181/510 (35%), Positives = 289/510 (56%), Gaps = 35/510 (6%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y  C    D   +FDE+  ++V  +N +I  Y  +     AL +++ M V GF PD  T 
Sbjct: 151 YAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTL 210

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             V+ +C+    L  G +IH  +V+ G   + F  + LV MYGKCGCL+ A+ V   +  
Sbjct: 211 TTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQR 270

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT--------- 244
           K+VV+WNSM+AGY+  G     +++ R M+   I+P   T++S+L + + +         
Sbjct: 271 KNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFI 330

Query: 245 ------------------------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                                      N+ S + +F  +   N+VSWNVMI+ Y      
Sbjct: 331 HGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSY 390

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            EA+ ++  M   G++P+AI+  SVLPAC  L+ L  G++IH ++   KL+ N  +  AL
Sbjct: 391 LEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGAL 450

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +DMYAKCG++ EA  +F+Q+  +D VSWTSMI+AYG  GQ ++A+ LF KM  S   PD 
Sbjct: 451 LDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDK 510

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           + F+++LSACSHAGL++EG YYF  M  +Y   P +EH++CL+DLLGR G++ EAY++++
Sbjct: 511 VTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQ 570

Query: 461 QMP-MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519
           + P +  +  +  +L +AC L+  +D+G      +    P+    Y++LSN+YA   +W 
Sbjct: 571 RTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWD 630

Query: 520 DVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           +V++VR  +   G+KK PG S +E+  ++ 
Sbjct: 631 EVRKVRLKIKELGLKKNPGCSWIEVGKRIH 660



 Score =  241 bits (615), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 147/472 (31%), Positives = 247/472 (52%), Gaps = 39/472 (8%)

Query: 43  DIKTLK--KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFFN 99
           D K LK  KL  Q I++  L +N ++   L+  Y +C      + VF  I N  ++  +N
Sbjct: 15  DSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWN 74

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGF-DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
            L+ +   N+++ + L V+  +    +  PD +TYP VLKACSG   +  G  +H  V+K
Sbjct: 75  GLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIK 134

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
            G   ++   +  V MY KC   ++A ++ ++MP +DV +WN++++ Y Q+G+ ++AL++
Sbjct: 135 SGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALEL 194

Query: 219 CREMESLRIKPDADTMASLLPSVT---------NTSPENVLS------------------ 251
             EM+    KPD+ T+ +++ S               E V S                  
Sbjct: 195 FEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGK 254

Query: 252 ------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                  KE+F ++  KN+VSWN MIA Y+        ++L+ +M+  GI P   +++S+
Sbjct: 255 CGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSI 314

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L AC     L LG+ IH Y+ R +++ ++ + ++L+D+Y KCG++  A  VF  M   +V
Sbjct: 315 LMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNV 374

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           VSW  MIS Y   G   +A+ +F+ M  +G+ PD+I F SVL ACS   +LE+G+     
Sbjct: 375 VSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNF 434

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           + E  KL         L+D+  + G V+EA  +  Q+P E +   W S++AA
Sbjct: 435 IIES-KLEINEVVMGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMIAA 484



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 185/381 (48%), Gaps = 45/381 (11%)

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK- 194
           +LK C  S  L  G  IH  +V +GL  N+     L+ +Y  C   + A+ V   + +  
Sbjct: 9   LLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPL 68

Query: 195 DVVTWNSMVAGYAQNGRFDEALDVC-REMESLRIKPDADTMASLLPSVTNT--------- 244
           D+  WN ++A   +N  F E L+V  R +    +KPDA T  S+L + +           
Sbjct: 69  DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMV 128

Query: 245 -----------------------SPENVLS-VKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                                  +  NV     ++F ++  +++ SWN +I+ Y  +  P
Sbjct: 129 HTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQP 188

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            +A++L+ +M+V G +P+++++ +V+ +C  L  L  G++IH  + R     +  + +AL
Sbjct: 189 EKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSAL 248

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           VDMY KCG L  A+ VF+Q++ ++VVSW SMI+ Y + G     + LF +M   G+ P  
Sbjct: 249 VDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTL 308

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH----FACLVDLLGRAGKVEEAY 456
               S+L ACS +  L+ G++        Y +  R+E      + L+DL  + G +  A 
Sbjct: 309 TTLSSILMACSRSVNLQLGKF-----IHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAE 363

Query: 457 DLIKQMPMEPNERIWGSLVAA 477
           ++ + MP + N   W  +++ 
Sbjct: 364 NVFQNMP-KTNVVSWNVMISG 383



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 149/313 (47%), Gaps = 9/313 (2%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +H  II N+ + ++  +   L+  Y  CG +    +VF  +   NVV +NV+I  YV 
Sbjct: 328 KFIHGYIIRNR-VEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVK 386

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
              Y +AL ++ +M   G  PD  T+  VL ACS    L  G +IH  +++  L+ N   
Sbjct: 387 VGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVV 446

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L+ MY KCG + EA  + N +P +D V+W SM+A Y  +G+  EAL +  +M+    
Sbjct: 447 MGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDA 506

Query: 228 KPDADTMASLLPSVTNTS--PENVLSVKEMFLKLDNKNLVS-WNVMIAVYANNSMPAEAV 284
           KPD  T  ++L + ++     E      +M  +   K  V  ++ +I +        EA 
Sbjct: 507 KPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAY 566

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR-YVERKKLQPNLRLENALVDM 343
           ++ LQ     I  +   ++++  AC     L LG +I R  +E+    P+  +   L +M
Sbjct: 567 EI-LQ-RTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYI--ILSNM 622

Query: 344 YAKCGSLTEARTV 356
           YA      E R V
Sbjct: 623 YASVKKWDEVRKV 635



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 88/189 (46%), Gaps = 8/189 (4%)

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           +   + S+L  C D   L  G+ IH+ +    LQ N+ L  +L+++Y  C     A+ VF
Sbjct: 2   DTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVF 61

Query: 358 DQMRCQ-DVVSWTSMISAYGMSGQGYDAVALFSKML-MSGLCPDSIAFVSVLSACSHAGL 415
             +    D+  W  +++A   +    + + +F ++L    L PD+  + SVL ACS  G 
Sbjct: 62  QTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGR 121

Query: 416 LEEGRY-YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
           +  G+  +  ++   + +   +   +  V +  +    E+A  L  +MP E +   W ++
Sbjct: 122 VGYGKMVHTHVIKSGFAM--DVVVMSSAVGMYAKCNVFEDAIKLFDEMP-ERDVASWNNV 178

Query: 475 VAACCLYSN 483
           ++  C Y +
Sbjct: 179 IS--CYYQD 185


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 190/522 (36%), Positives = 282/522 (54%), Gaps = 37/522 (7%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S+  +G  L+  Y  CG + D R VFD + +++V+ +N +I     N   ++A  ++  M
Sbjct: 267 SDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKM 326

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              GF PD  TY  +L     + +     ++H   V+VGL  +L  G+  V MY +CG +
Sbjct: 327 QQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSI 386

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
            +A+ + + +  ++V TWN+M+ G AQ     EAL +  +M      PDA T  ++L + 
Sbjct: 387 DDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA- 445

Query: 242 TNTSPE----------------------------------NVLSVKEMFLKLDNKNLVSW 267
            N   E                                  N +  K++F  +  +N+ +W
Sbjct: 446 -NVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTW 504

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
            VMI+  A +    EA  L+LQM   GI P+A +  S+L AC    AL   +++H +   
Sbjct: 505 TVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVN 564

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
             L  +LR+ NALV MYAKCGS+ +AR VFD M  +DV SWT MI      G+G DA+ L
Sbjct: 565 AGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDL 624

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           F KM + G  P+  +FV+VLSACSHAGL++EGR  F  +T+ Y + P +EH+ C+VDLLG
Sbjct: 625 FVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLG 684

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507
           RAG++EEA   I  MP+EP +  WG+L+ AC  Y N+++   AA     L P  +  YVL
Sbjct: 685 RAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVL 744

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           LSNIYA  G W     VR  M  +GI+K PG S +E+++Q+ 
Sbjct: 745 LSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIH 786



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 197/401 (49%), Gaps = 36/401 (8%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +K  KK+HA II      S+  +   L+  Y  CG + D + +FD++  +NV+ + V+I 
Sbjct: 46  LKWGKKIHAHII-QSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIG 104

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
              +     +A H +  M   GF P+ YTY  +L A + + +L    ++H   V  GL  
Sbjct: 105 GLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLAL 164

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           +L  GN LV MY K G + +AR V + M  +D+ +W  M+ G AQ+GR  EA  +  +ME
Sbjct: 165 DLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQME 224

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKE----------------------------- 254
                P+  T  S+L +   TS   +  VKE                             
Sbjct: 225 RGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGS 284

Query: 255 ------MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
                 +F  + +++++SWN MI   A N    EA  ++L+M+  G  P++ +  S+L  
Sbjct: 285 IDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNT 344

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
                A    +++H++     L  +LR+ +A V MY +CGS+ +A+ +FD++  ++V +W
Sbjct: 345 HVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTW 404

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
            +MI        G +A++LF +M   G  PD+  FV++LSA
Sbjct: 405 NAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA 445



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/414 (29%), Positives = 194/414 (46%), Gaps = 41/414 (9%)

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           +I  Y       DA+ VY  M   G  P+  TY  +LKAC    SL  G +IH  +++ G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
              ++     LV MY KCG + +A+ + + M  ++V++W  M+ G A  GR  EA     
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 221 EMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMF-------LKLD------------- 260
           +M+     P++ T  S+L +  N S   +  VKE+        L LD             
Sbjct: 121 QMQREGFIPNSYTYVSILNA--NASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAK 178

Query: 261 ---------------NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                           +++ SW VMI   A +    EA  L+LQME  G  PN  +  S+
Sbjct: 179 SGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSI 238

Query: 306 LPACGDLS--ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           L A    S  AL   +++H++  +     +LR+ NAL+ MYAKCGS+ +AR VFD M  +
Sbjct: 239 LNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDR 298

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           DV+SW +MI     +G G++A  +F KM   G  PDS  ++S+L+     G  E  +   
Sbjct: 299 DVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVH 358

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           K   E   LV  +   +  V +  R G +++A  +  ++ +  N   W +++  
Sbjct: 359 KHAVE-VGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGG 410



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 157/342 (45%), Gaps = 36/342 (10%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           +K++H   +    L S+  +G   +  Y  CG + D + +FD++  +NV  +N +I    
Sbjct: 354 VKEVHKHAV-EVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVA 412

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
                 +AL ++  M   GF PD  T+  +L A  G  +L    ++H   +  GL  +L 
Sbjct: 413 QQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL-VDLR 471

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
            GN LV MY KCG    A++V +DM  ++V TW  M++G AQ+G   EA  +  +M    
Sbjct: 472 VGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREG 531

Query: 227 IKPDADTMASLLPSVTNTSP---------------------------------ENVLSVK 253
           I PDA T  S+L +  +T                                    +V   +
Sbjct: 532 IVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDAR 591

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
            +F  +  +++ SW VMI   A +    +A+DL+++M++ G +PN  S  +VL AC    
Sbjct: 592 RVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAG 651

Query: 314 ALLLGRK-IHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
            +  GR+      +   ++P +     +VD+  + G L EA+
Sbjct: 652 LVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAK 693



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 160/363 (44%), Gaps = 42/363 (11%)

Query: 202 MVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV-------------------- 241
           M+ GYA+ G  ++A+ V  +M     +P+  T  S+L +                     
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 242 --TNTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
             ++   E  L             + +F K+  +N++SW VMI   A+     EA   +L
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           QM+  G  PN+ +  S+L A     AL   +++H +     L  +LR+ NALV MYAK G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL- 407
           S+ +AR VFD M  +D+ SWT MI      G+G +A +LF +M   G  P+   ++S+L 
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 408 -SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA---YDLIKQMP 463
            SA +  G LE  +   K    +   +  +     L+ +  + G +++A   +D +    
Sbjct: 241 ASAITSTGALEWVKEVHK-HAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRD 299

Query: 464 MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKR 523
           +     + G L    C +    I +      F   P+ + Y  LL N +   G W  VK 
Sbjct: 300 VISWNAMIGGLAQNGCGHEAFTIFLKMQQEGF--VPDSTTYLSLL-NTHVSTGAWEWVKE 356

Query: 524 VRK 526
           V K
Sbjct: 357 VHK 359



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 109/219 (49%), Gaps = 7/219 (3%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++ +K++H+  + N  L S+  +G  L+  Y  CG + D R VFD++  ++V  + V+I 
Sbjct: 552 LEWVKEVHSHAV-NAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIG 610

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLD 162
               +    DAL ++  M + GF P+ Y++  VL ACS +  +  G +   S+ +  G++
Sbjct: 611 GLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIE 670

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             + +   +V + G+ G L+EA+  + +MP       W +++      G  + A    + 
Sbjct: 671 PTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAK- 729

Query: 222 MESLRIKPDADTMASLLPSV--TNTSPENVLSVKEMFLK 258
            E L++KP + +   LL ++     + E  L V+ M  +
Sbjct: 730 -ERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQR 767



 Score = 42.7 bits (99), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 19/172 (11%)

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-RYYFKIMTEQ 429
           MI  Y   G   DA+ ++S+M   G  P+ I ++S+L AC     L+ G + +  I+   
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           ++   R+E    LV++  + G +++A  +  +M +E N   W  ++     Y        
Sbjct: 61  FQSDVRVE--TALVNMYVKCGSIDDAQLIFDKM-VERNVISWTVMIGGLAHYGR------ 111

Query: 490 AADHIFH--LAPNQSGY------YVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
                FH  L   + G+      YV + N  A AG    VK V     + G+
Sbjct: 112 -GQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGL 162


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 182/512 (35%), Positives = 294/512 (57%), Gaps = 43/512 (8%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +K   ++HA +++ + L     +G K++  Y + G +  +  VF+ I   + + FN +IR
Sbjct: 86  LKLGHQVHAHMLL-RGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIR 144

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           +Y         +  Y +M   GF  D +T+P VLK+     S+ +G  +H  ++++GL +
Sbjct: 145 AYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQF 204

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           +L+    L+ +YGKCG + +A +V ++M  +DV +WN+++AGY ++G  D AL +     
Sbjct: 205 DLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAI----- 259

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
                                           F ++  +N+VSW  MI+ Y+ + +  +A
Sbjct: 260 --------------------------------FERMPWRNIVSWTTMISGYSQSGLAQQA 287

Query: 284 VDLYLQM--EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
           + L+ +M  E  G+ PN +++ SVLPAC  LS L  GR+IH    R  L  N  +  AL 
Sbjct: 288 LSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALT 347

Query: 342 DMYAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
            MYAKCGSL +AR  FD++    +++++W +MI+AY   G G  AV+ F +M+ +G+ PD
Sbjct: 348 AMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPD 407

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
            I F  +LS CSH+GL++ G  YF  M+  Y + PR+EH+AC+ DLLGRAG++ EA  L+
Sbjct: 408 DITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLV 467

Query: 460 KQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519
            +MPM     IWGSL+AAC  + N+++   AA  +F L P  +G YVLLSN+YA+AGRW 
Sbjct: 468 GEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQ 527

Query: 520 DVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           +V ++R  + S+G KK PG S +E+N +  + 
Sbjct: 528 EVDKLRAIVKSQGTKKSPGCSWIEINGKAHMF 559



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 24/192 (12%)

Query: 297 PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTV 356
           P  +S A V      L+ L LG ++H ++  + LQP   + + +V  YA  G +  + +V
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 357 FDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA------- 409
           F+ +     + + SMI AY   G     VA +  M   G   D   F  VL +       
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSV 187

Query: 410 ----CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME 465
               C H  +L  G         Q+ L         L+ L G+ G++ +A  +   M + 
Sbjct: 188 WMGKCVHGLILRIGL--------QFDLYVATS----LIILYGKCGEINDAGKVFDNMTIR 235

Query: 466 PNERIWGSLVAA 477
            +   W +L+A 
Sbjct: 236 -DVSSWNALLAG 246


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 204/570 (35%), Positives = 324/570 (56%), Gaps = 38/570 (6%)

Query: 29  LSGDAC-NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG--ACGQMVD-TR 84
           ++ D+C N+ L     +  LK+LH QI  N  L   PS   KL+      A  + +D  R
Sbjct: 22  MTKDSCLNESLRCCKTLNQLKQLHCQITKNG-LDQIPSTLTKLVNAGAEIASPESLDYAR 80

Query: 85  HVFD----EITNKNVVF-FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA 139
             F+    ++ + + +F  N LIR Y +  L  +A+ +Y  M V G  P+ YT+P VL  
Sbjct: 81  KAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSG 140

Query: 140 CSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTW 199
           C+   +   G+Q+H SVVK+GL+ ++F  N L+  Y +CG +    +V   M  ++VV+W
Sbjct: 141 CTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSW 200

Query: 200 NSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKL 259
            S++ GYA+  R  EA+ +  EM +         M + L  +       + + K +F + 
Sbjct: 201 TSLICGYARGDRPKEAVSLFFEMLN-------KVMVNALVDMYMKCGA-IDAAKRLFDEC 252

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
            ++NLV +N +++ YA   +  EA+ +  +M   G  P+ +++ S + A   L  L  G+
Sbjct: 253 VDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGK 312

Query: 320 K-----IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
                 +H Y+E+  +  ++RL  ALVDM+A+CG    A  VF++M  +DV +WT+ I  
Sbjct: 313 VCHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGT 372

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
             M G G  A  LF++ML+ G+ PD + FV VL+ACSH G +E+G + F +M E + + P
Sbjct: 373 MAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLM-EDHGISP 431

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
           +IEH+ C+VDLLGRAG + EA+DLIK MPMEPN+ +WGSL+AAC ++ N+++   AA+ I
Sbjct: 432 QIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERI 491

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV------------- 541
             LAP ++G +VLLSNIYA AG+W DV RVR  +  KG++K+PG+S              
Sbjct: 492 NELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSG 551

Query: 542 -EMNDQVQIIALPLRSSKCLTTGPKNVPPI 570
            E + ++  IAL L+   C  +   ++P +
Sbjct: 552 DESHPEMTHIALMLQEMNCRFSDAGHIPDL 581


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 183/532 (34%), Positives = 303/532 (56%), Gaps = 34/532 (6%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           +H  ++ + H  ++  +   L+  Y  CG+M D   VF+ +  ++ V +N L+   V N 
Sbjct: 270 IHGAVLKSNHF-ADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNE 328

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
           LY DAL+ +++M   G  PD  +   ++ A   S +LL G ++H   ++ GLD N+  GN
Sbjct: 329 LYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGN 388

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            LV MY KC C+K        M  KD+++W +++AGYAQN    EA+++ R+++   +  
Sbjct: 389 TLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDV 448

Query: 230 DADTMASLLPSVTNTSPENVLS--------------------------------VKEMFL 257
           D   + S+L + +     N +                                  +  F 
Sbjct: 449 DPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFE 508

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
            + +K++VSW  MI    +N +P EA++L+  ++   I+P++I++ S L A  +LS+L  
Sbjct: 509 SIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKK 568

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           G++IH ++ RK       + ++LVDMYA CG++  +R +F  ++ +D++ WTSMI+A GM
Sbjct: 569 GKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGM 628

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
            G G  A+ALF KM    + PD I F+++L ACSH+GL+ EG+ +F+IM   Y+L P  E
Sbjct: 629 HGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPE 688

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHL 497
           H+AC+VDLL R+  +EEAY  ++ MP++P+  IW +L+ AC ++SN ++G LAA  +   
Sbjct: 689 HYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQS 748

Query: 498 APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
               SG Y L+SNI+A  GRW DV+ VR  M   G+KK PG S +E+++++ 
Sbjct: 749 DTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIH 800



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 136/481 (28%), Positives = 241/481 (50%), Gaps = 50/481 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LHA +++  HL  +  +  KL+  YG CG + D   VFDE++ + +  +N L+ ++V+
Sbjct: 66  QQLHA-LLLKSHL--SAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVS 122

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +  Y +A+ +YK+M V G   D  T+P VLKAC       +G +IH   VK G    +F 
Sbjct: 123 SGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFV 182

Query: 168 GNGLVAMYGKCGCLKEARRVLND--MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
            N L+AMYGKCG L  AR + +   M  +D V+WNS+++ +   G   EAL + R M+ +
Sbjct: 183 CNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEV 242

Query: 226 RIKPDADTMASLLPSVTNTS----------------------PENVL-----------SV 252
            +  +  T  + L  V + S                        N L             
Sbjct: 243 GVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDA 302

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
             +F  +  ++ VSWN +++    N + ++A++ +  M+  G +P+ +SV +++ A G  
Sbjct: 303 GRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRS 362

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
             LL G+++H Y  R  L  N+++ N LVDMYAKC  +      F+ M  +D++SWT++I
Sbjct: 363 GNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTII 422

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           + Y  +    +A+ LF K+ + G+  D +   SVL ACS    L+   +  +I    +K 
Sbjct: 423 AGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSG---LKSRNFIREIHGYVFKR 479

Query: 433 -VPRIEHFACLVDLLGRAGKVE---EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
            +  I     +V++ G  G ++    A++ I+   +      W S++  CC+++ + +  
Sbjct: 480 DLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVS----WTSMI-TCCVHNGLPVEA 534

Query: 489 L 489
           L
Sbjct: 535 L 535



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 242/482 (50%), Gaps = 64/482 (13%)

Query: 70  LMRTYGACGQMVDTRHVFDEI--TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD 127
           L+  YG CG +   R +FD I    ++ V +N +I ++V      +AL +++ M   G  
Sbjct: 186 LIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVA 245

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
            + YT+   L+     + + +G+ IH +V+K     +++  N L+AMY KCG +++A RV
Sbjct: 246 SNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRV 305

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE 247
              M  +D V+WN++++G  QN  + +AL+  R+M++   KPD  ++ +L+ +   +   
Sbjct: 306 FESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSG-- 363

Query: 248 NVLSVKEM-----------------------------------FLKLDNKNLVSWNVMIA 272
           N+L  KE+                                   F  +  K+L+SW  +IA
Sbjct: 364 NLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIA 423

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            YA N    EA++L+ +++V G++ + + + SVL AC  L +    R+IH YV ++ L  
Sbjct: 424 GYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL-A 482

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           ++ L+NA+V++Y + G +  AR  F+ +R +D+VSWTSMI+    +G   +A+ LF  + 
Sbjct: 483 DIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLK 542

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF------ACLVDLL 446
            + + PDSIA +S LSA ++   L++G+       E +  + R   F      + LVD+ 
Sbjct: 543 QTNIQPDSIAIISALSATANLSSLKKGK-------EIHGFLIRKGFFLEGPIASSLVDMY 595

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLV----------AACCLYSNMDIGILAADHIFH 496
              G VE +  +   +  + +  +W S++           A  L+  M    +  DHI  
Sbjct: 596 ACCGTVENSRKMFHSVK-QRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITF 654

Query: 497 LA 498
           LA
Sbjct: 655 LA 656



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 8/176 (4%)

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           +L  C    AL  G+++H  + +  L     L   LV MY KCGSL +A  VFD+M  + 
Sbjct: 52  LLDLCVAAKALPQGQQLHALLLKSHLSA--FLATKLVLMYGKCGSLRDAVKVFDEMSERT 109

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
           + SW +++ A+  SG+  +A+ L+  M + G+  D+  F SVL AC   G L E R   +
Sbjct: 110 IFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKAC---GALGESRLGAE 166

Query: 425 IMTEQYKLVPRIEHFAC--LVDLLGRAGKVEEAYDLIKQMPMEPNERI-WGSLVAA 477
           I     K       F C  L+ + G+ G +  A  L   + ME  + + W S+++A
Sbjct: 167 IHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISA 222


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 185/498 (37%), Positives = 299/498 (60%), Gaps = 16/498 (3%)

Query: 68  LKLMRTYGACGQMVDTR-HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF 126
            K+M   G  G+  ++   +FD++ +++V+ +N +I  YV+N L    L +YK M   G 
Sbjct: 188 FKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGI 247

Query: 127 DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR 186
           D D  T   VL  C+ S +L +G  +H   +K   +  +   N L+ MY KCG L  A R
Sbjct: 248 DVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALR 307

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT-S 245
           V   M  ++VV+W SM+AGY ++GR D A+ + ++ME   +K D   + S+L +   + S
Sbjct: 308 VFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGS 367

Query: 246 PENVLSVKEMFLKLDN--KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI-------- 295
            +N   V + ++K +N   NL   N ++ +YA       A  ++  M V  I        
Sbjct: 368 LDNGKDVHD-YIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG 426

Query: 296 --EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
             +P++ ++A VLPAC  LSAL  G++IH Y+ R     +  + NALVD+Y KCG L  A
Sbjct: 427 ELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLA 486

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
           R +FD +  +D+VSWT MI+ YGM G G +A+A F++M  +G+ PD ++F+S+L ACSH+
Sbjct: 487 RLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHS 546

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           GLLE+G  +F IM   + + P++EH+AC+VDLL R G + +AY+ ++ +P+ P+  IWG+
Sbjct: 547 GLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGA 606

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           L+  C  Y ++++    A+ +F L P  +GYYVLL+NIYA+A +W +VKR+R+ +  +G+
Sbjct: 607 LLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGL 666

Query: 534 KKMPGAS-VEMNDQVQII 550
           +K PG S +E+  +V + 
Sbjct: 667 RKNPGCSWIEIKGKVNLF 684



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 119/377 (31%), Positives = 189/377 (50%), Gaps = 47/377 (12%)

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVK---VGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           TY  VL+ C+G  S   G ++H S++K   VG+D  L  G  LV+ Y  CG LKE RRV 
Sbjct: 101 TYGSVLQLCAGLKSFTDGKKVH-SIIKSNSVGVDGAL--GLKLVSFYATCGDLKEGRRVF 157

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
           + M  K+V  WN MV+ YA+ G F E++ + + M              +   +    PE+
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIM--------------VEKGIEGKRPES 203

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
                E+F KL +++++SWN MI+ Y +N +    + +Y QM   GI+ +  ++ SVL  
Sbjct: 204 AF---ELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVG 260

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C +   L LG+ +H    +   +  +   N L+DMY+KCG L  A  VF++M  ++VVSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR---YYFKI 425
           TSMI+ Y   G+   A+ L  +M   G+  D +A  S+L AC+ +G L+ G+    Y K 
Sbjct: 321 TSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380

Query: 426 MTEQYKLVPRIEHFAC--LVDLLGRAGKVEEAYDLIKQM-------------PMEPNERI 470
              +  L      F C  L+D+  + G +E A  +   M              ++P+ R 
Sbjct: 381 NNMESNL------FVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRT 434

Query: 471 WGSLVAACCLYSNMDIG 487
              ++ AC   S ++ G
Sbjct: 435 MACVLPACASLSALERG 451



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 5/161 (3%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H  I+ N +  S+  +   L+  Y  CG +   R +FD I +K++V + V+I  Y  
Sbjct: 452 KEIHGYILRNGY-SSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGM 510

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK--VGLDYNL 165
           +    +A+  +  M   G +PD  ++  +L ACS S  L  G +    ++K    ++  L
Sbjct: 511 HGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMKNDFNIEPKL 569

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAG 205
            +   +V +  + G L +A   +  +P + D   W +++ G
Sbjct: 570 EHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCG 610


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 191/532 (35%), Positives = 297/532 (55%), Gaps = 71/532 (13%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VF  I   N + +N +IR +  +     AL++Y  M   G  P+ YT+P + K+C+ S +
Sbjct: 34  VFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKA 93

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN---------------- 189
              G QIH  ++K GL  +L     L++MY + G +++A +V +                
Sbjct: 94  AQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITG 153

Query: 190 ---------------DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
                          ++P KDVV+WN+M++GYA+ GR+ EAL++  EM  + +KPD  TM
Sbjct: 154 YASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTM 213

Query: 235 ASLLPSVTNTSPENVLSVKEMFLKLDN--------------------------------- 261
           A++L + T++   NV   +++   +DN                                 
Sbjct: 214 ATVLSTCTHSG--NVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGL 271

Query: 262 --KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
             K+++SWN +I  YA  +   EA+ ++ +M   G  PN +++ S+LPAC  L A+ +GR
Sbjct: 272 QYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGR 331

Query: 320 KIHRYVERK--KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
            IH Y+++K   +  N  L+ +L+DMYAKCG++  A  VFD +  + + S  +MI  + M
Sbjct: 332 WIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAM 391

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
            G+   A  L S+M   G+ PD I FV +LSACSHAGL + GR  FK MT  Y++ P++E
Sbjct: 392 HGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLE 451

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHL 497
           H+ C++DLLGR+G  +EA +LI  M MEP+  IWGSL+ AC ++ N+++G L A  +  +
Sbjct: 452 HYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKI 511

Query: 498 APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
            P   G YVLLSNIYA + RW DV RVR  +N KG+KK+PG +S+E++  V 
Sbjct: 512 EPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVH 563



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 162/342 (47%), Gaps = 37/342 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y + G M   + +FDEI  K+VV +N +I  Y     Y +AL ++  M      PD
Sbjct: 150 MITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPD 209

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   VL  C+ S ++ +G QIH  +   G   NL   N L+ +Y KCG ++ A  +  
Sbjct: 210 ESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFE 269

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
            +  KDV++WN+++ GYA      EAL V +EM  L   P+  TM S+LP+         
Sbjct: 270 GLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDI 329

Query: 241 ---------------VTNTSPE-----------NVLSVKEMFLKLDNKNLVSWNVMIAVY 274
                          +TNTS +           N+ +  ++F  + NK+L S N MI  +
Sbjct: 330 GRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGF 389

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPN 333
           A +     A DL  +M+  GIEP+ I+   +L AC       LGRKI + +    +++P 
Sbjct: 390 AMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPK 449

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
           L     ++D+  + G   EA  + + M  + D V W S++ A
Sbjct: 450 LEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKA 491



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 138/288 (47%), Gaps = 19/288 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++H+ I  N    SN  +   L+  Y  CG+M     +F+ +  K+V+ +N LI  Y  
Sbjct: 230 RQIHSWID-NHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAY 288

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK--VGLDYNL 165
              + +AL V++ M   G  P+  T   +L AC+   ++ +G  IH  + K   G+  N 
Sbjct: 289 INHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNT 348

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
                L+ MY KCG ++ A +V + + +K + + N+M+ G+A +GR D A D+   M+  
Sbjct: 349 SLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKD 408

Query: 226 RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK---NLVSWNVMIAVYANNSMPAE 282
            I+PD  T   LL + ++    ++       + LD +    L  +  MI +   + +  E
Sbjct: 409 GIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKE 468

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
           A +L   M    +EP+ +   S+L AC          KIH+ +E  +L
Sbjct: 469 AEELINSMT---MEPDGVIWGSLLKAC----------KIHKNLELGEL 503



 Score = 45.4 bits (106), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 3/108 (2%)

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           A +VF  ++  + +SW +MI  + +S     A+ L+  M+  GL P+S  F  +  +C+ 
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 413 AGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
           +   +EG+  + +I+  +Y L   +     L+ +  + G VE+A+ + 
Sbjct: 91  SKAAQEGKQIHAQIL--KYGLTVDLHVHTSLISMYAQNGIVEDAHKVF 136


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 186/523 (35%), Positives = 299/523 (57%), Gaps = 46/523 (8%)

Query: 36  DILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNV 95
             L ++  IK  ++ HAQI+++  L  N  +  K++  Y + G +     VFD I N + 
Sbjct: 85  QFLTRHNFIKLGQQAHAQIVLHG-LQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSS 143

Query: 96  VFFNVLIRSYVNN---YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           + +N +IR+Y  +         L  Y  M   G   D +T P VLK+C+  + + +G  +
Sbjct: 144 LLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCV 203

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H   ++VGL+ + + G  L+ MY KCG + +AR++ + M  +D+ +WN+++AGY + G  
Sbjct: 204 HGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEI 263

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIA 272
             A D                                     +F +++++N+VSW  MI+
Sbjct: 264 GVAED-------------------------------------LFERMEHRNIVSWTAMIS 286

Query: 273 VYANNSMPAEAVDLYLQMEVHGIE--PNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
            Y  N    +A+ L+ +M   G E  PN +++ SVLPAC   +AL  GR+IH +     L
Sbjct: 287 GYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGL 346

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQM--RCQDVVSWTSMISAYGMSGQGYDAVALF 388
             N  ++ AL  MYAKC SL EAR  FD +    +++++W +MI+AY   G G +AV++F
Sbjct: 347 HLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIF 406

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
             ML +G+ PD++ F+ +LS CSH+GL++ G  +F  M   + + PR+EH+AC+VDLLGR
Sbjct: 407 ENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGR 466

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508
           AG++ EA +LI QMPM+    +WG+L+AAC  + N++I  LAA  +F L P+ SG YVLL
Sbjct: 467 AGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLL 526

Query: 509 SNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           SN+YA+AG W +VK++R  +  +G+KK PG S +E+N +  + 
Sbjct: 527 SNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLF 569



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 12/206 (5%)

Query: 280 PAEAVDLYLQMEVHGI---EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           P  +++L L++ +  I    P+  S A +       + + LG++ H  +    LQPN  L
Sbjct: 55  PKPSLNLQLRILLQPILQHFPHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFL 114

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY---GMSGQGYDAVALFSKMLM 393
              +V MYA  G L  A  VFD++     + + S+I AY   G        +  +++M  
Sbjct: 115 AAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHF 174

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGK 451
            GL  D+     VL +C+    +  GR    +  +  ++    + +  A L+D+  + G 
Sbjct: 175 LGLLGDNFTLPFVLKSCADLSRVCMGRC---VHGQGLRVGLEGDFYVGASLIDMYVKCGV 231

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAA 477
           + +A  L  +M +  +   W +L+A 
Sbjct: 232 IGDARKLFDKMIVR-DMASWNALIAG 256


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 185/530 (34%), Positives = 299/530 (56%), Gaps = 67/530 (12%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +F+ I   N++ +N + R +  N     AL +Y  M   G  P+ Y++P +LK+C+ S +
Sbjct: 21  IFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKA 80

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA--------------------- 184
           L+ G QIH  V+K+G D +++    L++MY + G L++A                     
Sbjct: 81  LIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITG 140

Query: 185 ----------RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
                     R++ +++  KDVV+WN+M++GY +   F EAL++ ++M    +KPD  TM
Sbjct: 141 YASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTM 200

Query: 235 ASLLPSV----------------------TNTSPENVL-----------SVKEMFLKLDN 261
            +++ +                       +N    NVL           +   +F  L  
Sbjct: 201 VTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAK 260

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           K+++SWN +I  + + ++  EA+ L+ +M   G  PN +++ SVLPAC  L A+ +GR I
Sbjct: 261 KDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWI 320

Query: 322 HRYVER--KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
           H Y+ +  K +     L  +L+DMYAKCG +  A+ VFD M  + + SW +MI  + M G
Sbjct: 321 HVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHG 380

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
           +   A  LFSKM  +G+ PD I FV +LSACSH+G+L+ GR+ F+ M++ YK+ P++EH+
Sbjct: 381 KANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHY 440

Query: 440 ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
            C++DLLG  G  +EA ++I+ MPMEP+  IW SL+ AC +++N+++G   A ++  + P
Sbjct: 441 GCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEP 500

Query: 500 NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
              G YVLLSNIYA AGRW  V ++R  +N KGIKK PG +S+E++  V 
Sbjct: 501 ENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVH 550



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 168/345 (48%), Gaps = 37/345 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y + G + + R +FDEI+ K+VV +N +I  YV    + +AL +YK+M      PD
Sbjct: 137 LITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPD 196

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   V+ AC+ S S+ +G Q+H  +   G   N+   N L+ +Y KCG ++ A  +  
Sbjct: 197 ESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQ 256

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
            +  KDV++WN+++ G+     + EAL + +EM      P+  TM S+LP+         
Sbjct: 257 GLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDI 316

Query: 241 --------------VTNTSP------------ENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
                         VTN S              ++ + K++F  +  ++L SWN MI  +
Sbjct: 317 GRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGF 376

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPN 333
           A +     A DL+ +M  +GI+P+ I+   +L AC     L LGR I R + +  K+ P 
Sbjct: 377 AMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPK 436

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGM 377
           L     ++D+   CG   EA+ +   M  + D V W S++ A  M
Sbjct: 437 LEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKM 481



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 133/272 (48%), Gaps = 11/272 (4%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           I+  ++LH+ I  +    SN  I   L+  Y  CG++     +F  +  K+V+ +N LI 
Sbjct: 213 IELGRQLHSWIE-DHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIG 271

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK--VGL 161
            + +  LY +AL +++ M   G  P+  T   VL AC+   ++ +G  IH  + K   G+
Sbjct: 272 GHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGV 331

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
                    L+ MY KCG ++ A++V + M ++ + +WN+M+ G+A +G+ + A D+  +
Sbjct: 332 TNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSK 391

Query: 222 MESLRIKPDADTMASLLPSVTNTS----PENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
           M    I PD  T   LL + +++       ++        K+  K L  +  MI +  + 
Sbjct: 392 MRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPK-LEHYGCMIDLLGHC 450

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            +  EA ++   M    +EP+ +   S+L AC
Sbjct: 451 GLFKEAKEMIRTMP---MEPDGVIWCSLLKAC 479



 Score = 42.0 bits (97), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 25/114 (21%), Positives = 61/114 (53%), Gaps = 5/114 (4%)

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           L+ A ++F+ ++  +++ W +M   + ++     A+ L+  M+  GL P+S +F  +L +
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQ 461
           C+ +  L EG+   +I     KL   ++ +    L+ +  + G++E+A+ +  +
Sbjct: 75  CAKSKALIEGQ---QIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDR 125


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 196/584 (33%), Positives = 304/584 (52%), Gaps = 81/584 (13%)

Query: 37  ILDKYPDIKTLK---KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
           IL K   +  L+   ++HAQ+++N  +     +G +L+  Y   G + D R +FD+++ +
Sbjct: 16  ILQKCRKLYNLRLGFQVHAQLVVNG-VDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 74

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           NV  +  ++  Y     Y + + ++  M   G  PD + +P V KACS   +  VG  ++
Sbjct: 75  NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY 134

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
             ++ +G + N      ++ M+ KCG +  ARR   ++  KDV  WN MV+GY   G F 
Sbjct: 135 DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFK 194

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTS---------------------------- 245
           +AL+V R+M    +KP++ T+AS + + TN S                            
Sbjct: 195 KALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 254

Query: 246 ------PENVLSVKEMFLKLDNKNLVSWNVMIAVY------------------------- 274
                   +V   +  F  +   +LVSWN M+AV                          
Sbjct: 255 VDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVF 314

Query: 275 ------------------ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
                             A +     A+DL  +M +  +E N +++ S LPAC  L+AL 
Sbjct: 315 SELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALR 374

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
            G++IH+++ R  L     + N+L+DMY +CGS+ ++R +FD M  +D+VSW  MIS YG
Sbjct: 375 QGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYG 434

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
           M G G DAV LF +    GL P+ I F ++LSACSH+GL+EEG  YFK+M  +Y + P +
Sbjct: 435 MHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAV 494

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           E +AC+VDLL RAG+  E  + I++MP EPN  +WGSL+ AC ++ N D+   AA ++F 
Sbjct: 495 EQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFE 554

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           L P  SG YVL++NIY+ AGRW D  ++R  M  +G+ K PG S
Sbjct: 555 LEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCS 598



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 113/462 (24%), Positives = 217/462 (46%), Gaps = 93/462 (20%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           Y  +L+ C    +L +G Q+H  +V  G+D   F G+ L+ +Y + GC+++ARR+ + M 
Sbjct: 13  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 72

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDV----------------------CREMESLRIKPD 230
            ++V +W +++  Y   G ++E + +                      C E+++ R+  D
Sbjct: 73  ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 132

Query: 231 A-DTMASLLPSVTNTSPENVLSV----------KEMFLKLDNKNLVSWNVMIAVYANNSM 279
             D M S+     +    ++L +          +  F +++ K++  WN+M++ Y +   
Sbjct: 133 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 192

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY-VERKKLQPNLRLEN 338
             +A++++ +M + G++PN+I++AS + AC +LS L  GR+IH Y ++ ++L  +L + N
Sbjct: 193 FKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGN 252

Query: 339 ALVDMYAKCGSLTEAR-------------------------------------------T 355
           +LVD YAKC S+  AR                                           +
Sbjct: 253 SLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACS 312

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           VF ++  +DVV W S+ISA   SG+  +A+ L  +M +S +  +++  VS L ACS    
Sbjct: 313 VFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAA 372

Query: 416 LEEGRYYFKIMTEQYKLVPRIEHFAC------LVDLLGRAGKVEEAYDLIKQMPMEPNER 469
           L +G+       E ++ + R     C      L+D+ GR G ++++  +   MP + +  
Sbjct: 373 LRQGK-------EIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP-QRDLV 424

Query: 470 IWGSLVAACCLYS-NMD-IGILAADHIFHLAPNQSGYYVLLS 509
            W  +++   ++   MD + +        L PN   +  LLS
Sbjct: 425 SWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLS 466


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 194/522 (37%), Positives = 296/522 (56%), Gaps = 47/522 (9%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+    ++HA ++      ++  +G  L+  Y  CG +     VF  +  +N+V +N LI
Sbjct: 162 DLNMGTQVHA-LVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLI 220

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-L 161
             Y  N    +AL V+  M   G +PD  T   V+ AC+   +L  GLQIH  VVK    
Sbjct: 221 TCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKF 280

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             +L  GN LV MY KC  + EARRV + M  ++VV+  SMV+GYA+             
Sbjct: 281 RDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYAR------------- 327

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
                                     +V + + MF K+  +N+VSWN +IA Y  N    
Sbjct: 328 ------------------------AASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENE 363

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ------PNLR 335
           EA+ L+  ++   I P   +  ++L AC +L+ LLLGR+ H +V ++  +       ++ 
Sbjct: 364 EALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIF 423

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           + N+L+DMY KCGS+ +   VF++M+ +D VSW ++I  Y  +G G +A+ +F KML+ G
Sbjct: 424 VGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCG 483

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
             PD +  + VL ACSHAGL+EEGR+YF  M E++ L+P  +H+ C+VDLLGRAG + EA
Sbjct: 484 EKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEA 542

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
            +LI+ MP+ P+  +WGSL+AAC ++ N+++G  AA+ +  + P  SG YVLLSN+YA+ 
Sbjct: 543 KNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAEL 602

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           GRWGDV RVRK M  +G+ K PG S +E+  +V +  +  +S
Sbjct: 603 GRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKS 644



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/488 (26%), Positives = 213/488 (43%), Gaps = 114/488 (23%)

Query: 121 MSVHGFDPDCYT-----YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMY 175
           M+ HG   D Y      +  +L +C  S S      +H  ++       +F  N L+ +Y
Sbjct: 1   MAKHGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVY 60

Query: 176 GKCGCLKEARRVLNDMPSKDVVT-------------------------------WNSMVA 204
           GKC CL +AR++ + MP ++  T                               WNSMV+
Sbjct: 61  GKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVS 120

Query: 205 GYAQNGRFDE----------------------ALDVCREMESLRIKPDADTMASLLPSVT 242
           G+AQ+ RF+E                      AL  C  +  L +      + S     T
Sbjct: 121 GFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYST 180

Query: 243 N-----------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
           +           +   +V   +E+F  +  +NLV+WN +I  Y  N   +EA++++++M 
Sbjct: 181 DVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMM 240

Query: 292 VHGIEPNAISVASVLPACGDLSALLLGRKIH-RYVERKKLQPNLRLENALVDMYAKCGSL 350
             G+EP+ +++ASV+ AC  L AL  G +IH R V+  K + +L L NALVDMYAKC  +
Sbjct: 241 DSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKV 300

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
            EAR VFD+M  ++VVS TSM+S Y  +     A  +FSKM    +    +++ ++++  
Sbjct: 301 NEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNV----VSWNALIAGY 356

Query: 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI 470
           +  G  EE    F+                                 L+K+  + P    
Sbjct: 357 TQNGENEEALRLFR---------------------------------LLKRESIWPTHYT 383

Query: 471 WGSLVAACCLYSNMDIGILAADHI----FHLAPN-QSGYYV--LLSNIYAKAGRWGDVKR 523
           +G+L++AC   +++ +G  A  H+    F      +S  +V   L ++Y K G   D  R
Sbjct: 384 FGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSR 443

Query: 524 VRKFMNSK 531
           V + M  +
Sbjct: 444 VFEKMKER 451


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 185/504 (36%), Positives = 275/504 (54%), Gaps = 42/504 (8%)

Query: 52  AQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLY 111
           A+ + ++    N  I   L+  Y   G +   R + D +T +  + +N +I  Y+++ L+
Sbjct: 211 ARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLF 270

Query: 112 YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL----DYNLFN 167
            DAL +++ M + G   D  TY  V+ AC+     L+G Q+H  ++K  L    D+ L  
Sbjct: 271 EDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSV 330

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           GN L+ +Y K G +  AR++  +MP KD++TWN++++GY   GR +EA            
Sbjct: 331 GNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEA------------ 378

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
                                    K  F ++  KNL++W VMI+  A N    +A+ L+
Sbjct: 379 -------------------------KSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLF 413

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
            QM++ G EPN  + A  + AC  L AL  GR++H  +        L + NA++ MYA+C
Sbjct: 414 NQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARC 473

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           G +  ART+F  M   D VSW SMI+A G  G G  A+ L+ +ML  G+ PD   F++VL
Sbjct: 474 GIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVL 533

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
           SACSHAGL+EEG  YF  M E Y + P  +H+A ++DL  RAGK  +A ++I  MP E  
Sbjct: 534 SACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEAR 593

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527
             IW +L+A C  + NMD+GI AA+ +F L P   G YVLLSN+YA  GRW DV R RK 
Sbjct: 594 APIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKL 653

Query: 528 MNSKGIKKMPGAS-VEMNDQVQII 550
           M  +G+KK P  S  E+ ++V + 
Sbjct: 654 MRDRGVKKEPACSWTEVENKVHVF 677



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 117/239 (48%), Gaps = 11/239 (4%)

Query: 11  FSTTKPVQALVLSTQ------YTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNP 64
           F   K V A +L  +      + L  G+    +  KY  +   +K+  ++ +   +  N 
Sbjct: 305 FLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNT 364

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
                L+  Y   G+M + +  F ++  KN++ + V+I     N     AL ++  M + 
Sbjct: 365 -----LLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLD 419

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G++P+ Y +   + ACS   +L  G Q+H  +V +G D  L  GN ++ MY +CG ++ A
Sbjct: 420 GYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAA 479

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           R +   MP  D V+WNSM+A   Q+G   +A+++  +M    I PD  T  ++L + ++
Sbjct: 480 RTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSH 538



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 148/371 (39%), Gaps = 82/371 (22%)

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H  V+  G        N L+ +Y K      AR++ +++P  DV+   +++  Y+  G 
Sbjct: 35  VHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSALGN 94

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
               L + RE                   + N +P            LD ++ V +N MI
Sbjct: 95  ----LKMARE-------------------IFNETP------------LDMRDTVFYNAMI 119

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA----------CGDLSALLLGRKI 321
             Y++ +    A++L+  M     +P+  + ASVL A          CG +   ++   I
Sbjct: 120 TGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGI 179

Query: 322 HRY--------------------------VERKKL-----QPNLRLENALVDMYAKCGSL 350
             +                             +KL     + N  +   L+  Y + G L
Sbjct: 180 EIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDL 239

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
           T AR + D M  Q  ++W +MIS Y   G   DA+ LF KM + G+  D   + SV+SAC
Sbjct: 240 TGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISAC 299

Query: 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFA----CLVDLLGRAGKVEEAYDLIKQMPMEP 466
           +  G    G+     + +  +L P  +        L+ L  + GKV+ A  +  +MP++ 
Sbjct: 300 ADGGFFLLGKQVHAYILKN-ELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVK- 357

Query: 467 NERIWGSLVAA 477
           +   W +L++ 
Sbjct: 358 DIITWNTLLSG 368



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 33/134 (24%)

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           +LS+  L R +H +V     +    + N L+D+Y K      AR +FD++   DV++ T+
Sbjct: 25  NLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTT 84

Query: 371 MISAYGMSGQ---------------------------------GYDAVALFSKMLMSGLC 397
           +I+AY   G                                  G+ A+ LF  M  +   
Sbjct: 85  LITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQ 144

Query: 398 PDSIAFVSVLSACS 411
           PD   F SVLSA +
Sbjct: 145 PDDFTFASVLSAST 158


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/554 (34%), Positives = 299/554 (53%), Gaps = 42/554 (7%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
           L K  ++  +K+LHAQI+   +LH +  +  KL+  +  C QM+   + F+++   NV  
Sbjct: 27  LHKCTNLNQVKQLHAQIL-KSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHL 85

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +N +IR++ +N     A   +  M   G   D +T+P +LK C+G+  L V   +H  + 
Sbjct: 86  YNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIE 145

Query: 158 KVGLDYNLFNGNGLVAMYGKCGC----------------------------------LKE 183
           K G   ++F  N L+  Y KCG                                    +E
Sbjct: 146 KFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEE 205

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           AR+V ++MP KD ++WN+M+ GY + G+ D+A  +  EM      P+ + ++     +  
Sbjct: 206 ARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEM------PERNVVSWSTMVLGY 259

Query: 244 TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
               ++   + +F K+  KNLVSW ++++ +A   +  EA+ L+ QME   ++ +  +V 
Sbjct: 260 CKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVM 319

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           S+L AC +   L LG KIH  ++    +    + NALVDMYAKCG L  A  VF+ ++ +
Sbjct: 320 SILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNK 379

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           DVVSW +M+    M G G  A+ LF +M   G  P+ +  + VL AC+HAGL+++G  YF
Sbjct: 380 DVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYF 439

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
             M   Y LVP +EH+ C+VDLLGR G++EEA  LI+ MPM PN  IWG+L+ AC +++ 
Sbjct: 440 STMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHNA 499

Query: 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA-SVE 542
           +++     DH+  L P  SG + +LSNIYA AG W  V   R  M S G KK  GA S+E
Sbjct: 500 VELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVANTRLRMRSIGTKKPSGASSIE 559

Query: 543 MNDQVQIIALPLRS 556
           +N++V    +  RS
Sbjct: 560 VNNEVHEFTVFDRS 573


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/572 (33%), Positives = 312/572 (54%), Gaps = 74/572 (12%)

Query: 48  KKLHAQIIINQHL-HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           K+LHAQ I  Q L H++ SI   ++  Y     + +   +F  + +  V+ +  +IR + 
Sbjct: 25  KQLHAQFIRTQSLSHTSASI---VISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFT 81

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
           +  L+  AL  +  M   G  PD   +P VLK+C+    L  G  +H  +V++G+D +L+
Sbjct: 82  DQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLY 141

Query: 167 NGNGLVAMYGKC-------------------------------GCL-----KEARRVLND 190
            GN L+ MY K                                 C+        RRV   
Sbjct: 142 TGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEV 201

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN------- 243
           MP KDVV++N+++AGYAQ+G +++AL + REM +  +KPD+ T++S+LP  +        
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKG 261

Query: 244 --------------------------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
                                          +   + +F +L  ++ +SWN ++A Y  N
Sbjct: 262 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQN 321

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
               EA+ L+ QM    ++P A++ +SV+PAC  L+ L LG+++H YV R     N+ + 
Sbjct: 322 GRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIA 381

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
           +ALVDMY+KCG++  AR +FD+M   D VSWT++I  + + G G++AV+LF +M   G+ 
Sbjct: 382 SALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVK 441

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
           P+ +AFV+VL+ACSH GL++E   YF  MT+ Y L   +EH+A + DLLGRAGK+EEAY+
Sbjct: 442 PNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYN 501

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
            I +M +EP   +W +L+++C ++ N+++    A+ IF +     G YVL+ N+YA  GR
Sbjct: 502 FISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGR 561

Query: 518 WGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           W ++ ++R  M  KG++K P  S +EM ++  
Sbjct: 562 WKEMAKLRLRMRKKGLRKKPACSWIEMKNKTH 593



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 111/207 (53%), Gaps = 1/207 (0%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           I  +Y D+   K++H   +I + + S+  IG  L+  Y    ++ D+  VF  +  ++ +
Sbjct: 251 IFSEYVDVIKGKEIHG-YVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGI 309

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +N L+  YV N  Y +AL +++ M      P    +  V+ AC+   +L +G Q+H  V
Sbjct: 310 SWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYV 369

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           ++ G   N+F  + LV MY KCG +K AR++ + M   D V+W +++ G+A +G   EA+
Sbjct: 370 LRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAV 429

Query: 217 DVCREMESLRIKPDADTMASLLPSVTN 243
            +  EM+   +KP+     ++L + ++
Sbjct: 430 SLFEEMKRQGVKPNQVAFVAVLTACSH 456


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 199/583 (34%), Positives = 310/583 (53%), Gaps = 50/583 (8%)

Query: 3   AVVLLCR-HFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLH 61
           A+  LCR  +   KPV   V +  Y L     C D      D+K  K++H Q+I N    
Sbjct: 131 ALAFLCRMRYDDVKPV---VYNFTYLL---KVCGD----NADLKRGKEIHGQLITNS-FA 179

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           +N      ++  Y  C Q+ D   +FD +  +++V +N +I  +  N     AL +   M
Sbjct: 180 ANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRM 239

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              G  PD  T   VL A +    L+VG  IH   ++ G    +     L  MY KCG +
Sbjct: 240 QDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSV 299

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM------------------- 222
           + AR + + M  K VV+WNSM+ GY QNG  ++A+ V  +M                   
Sbjct: 300 ETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHAC 359

Query: 223 ----------------ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS 266
                           + L +  D   M SL+   +     ++ S  ++F  L+ +  VS
Sbjct: 360 ADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIAS--DIFNNLNGRTHVS 417

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           WN MI  YA N   +EA++ + +M+  G++P++ ++ SV+PA  +LS     + IH  + 
Sbjct: 418 WNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLII 477

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           R  L  N+ +  ALVDMY+KCG++  AR +FD +  + V++W +MI  YG  G G  A+ 
Sbjct: 478 RSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALD 537

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           LF KM    + P+ I ++SV+SACSH+GL++EG  +FK M + Y L P ++H+  +VDLL
Sbjct: 538 LFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLL 597

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
           GRAG+++EA+D I+ MP+ P   ++G+   AC ++ N+++G  AA  +F L P++ GY+V
Sbjct: 598 GRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHV 657

Query: 507 LLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           LL+NIYA   +W  V  VRK M  KG+KK PG S VE+ ++V 
Sbjct: 658 LLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVH 700



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 142/572 (24%), Positives = 262/572 (45%), Gaps = 87/572 (15%)

Query: 46  TLKKLHAQI--IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++K+LH  I  +I   L++      KL+  +   G + +   VF+ I +K    ++ +++
Sbjct: 61  SMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLK 120

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            Y  N     AL     M      P  Y +  +LK C  +  L  G +IH  ++      
Sbjct: 121 GYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAA 180

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           N+F   G+V MY KC  + +A ++ + MP +D+V+WN+++AG++QNG   +AL++   M+
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 224 SLRIKPDADTMASLLPSVTN---------------------------------TSPENVL 250
               +PD+ T+ ++LP+  +                                 +   +V 
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
           + + +F  +D K +VSWN M+  Y  N  P +A+ ++ +M   GI+P  +++   L AC 
Sbjct: 301 TARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACA 360

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           DL  L  G+ +H++V++  L  ++ + N+L+ MY+KC  +  A  +F+ +  +  VSW +
Sbjct: 361 DLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNA 420

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV------LSACSHA----------- 413
           MI  Y  +G+  +A+  FS+M   G+ PDS   VSV      LS   HA           
Sbjct: 421 MILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC 480

Query: 414 ------------------GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
                             G +   R  F ++++++ +      +  ++D  G  G    A
Sbjct: 481 LDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVIT-----WNAMIDGYGTHGLGRAA 535

Query: 456 YDLIKQM---PMEPNERIWGSLVAACCLYSNMDIGIL---AADHIFHLAPNQSGYYVLLS 509
            DL  +M    +EPN+  + S+++AC     +D G+    +    + L P+   Y  ++ 
Sbjct: 536 LDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVD 595

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
            +    GR G +K    F+ +  I   PG +V
Sbjct: 596 LL----GRAGRIKEAWDFIENMPIS--PGITV 621


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 189/514 (36%), Positives = 296/514 (57%), Gaps = 46/514 (8%)

Query: 45  KTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           +T +++HA +  + H  S+  IG  L+  Y  C +  + + VFD +  +N+V +N LI  
Sbjct: 164 RTGEQVHALVTKSSH-GSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITC 222

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDY 163
           Y  N    +AL ++  M   GF PD  T   V+ AC+G  +   G Q+H  +VK      
Sbjct: 223 YEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFRE 282

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           ++   N LV MY KCG   EA+ V + M  + VV+  SM+ GYA++              
Sbjct: 283 DMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSA------------- 329

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
                                   NV   + +FL++  KN+V+WNV+IA YA+NS   EA
Sbjct: 330 ------------------------NVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEA 365

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL------QPNLRLE 337
           + L+++++   + P   +  +VL AC +L+ L LG++ H +V ++        + ++ + 
Sbjct: 366 LRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVG 425

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
           N+LVDMY K GS+++   VF++M  +D VSW +MI  Y  +G+  DA+ LF +ML S   
Sbjct: 426 NSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNER 485

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
           PDS+  + VLSAC H+GL++EGR YF+ MTE + ++P  +H+ C++DLLGRAG ++E  +
Sbjct: 486 PDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEE 545

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
           LI+ MPMEP+  +W SL+ AC L+ N+D+G  AA  +F L P+ SG YVLLSN+YA+ G+
Sbjct: 546 LIENMPMEPDAVLWASLLGACRLHKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAELGK 605

Query: 518 WGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           W DV RVR+ M  +G+ K PG S +E+  +V + 
Sbjct: 606 WADVFRVRRSMKHRGVSKQPGCSWIEIGRKVNVF 639



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 137/296 (46%), Gaps = 37/296 (12%)

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           N L++ Y + G L +ARRV + MP ++  ++N++++  A+ GR D+AL            
Sbjct: 54  NTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDAL------------ 101

Query: 229 PDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
                                     +F  + + +  S+N ++A  A +    +A+    
Sbjct: 102 -------------------------ALFGAIPDPDQCSYNAVVAALAQHGRGGDALRFLA 136

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
            M       NA S AS L AC    A   G ++H  V +     ++ +  ALVDMYAKC 
Sbjct: 137 AMHADDFVLNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCE 196

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
              EA+ VFD M  +++VSW S+I+ Y  +G   +A+ALF +M+  G  PD +   SV+S
Sbjct: 197 RPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMS 256

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM 464
           AC+      EGR     M +  +    +     LVD+  + G+  EA  +  +M +
Sbjct: 257 ACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAI 312



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 31/170 (18%)

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF------- 388
           L N L+  YA+ GSL +AR VFD M  ++  S+ +++SA    G+  DA+ALF       
Sbjct: 52  LLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDPD 111

Query: 389 --------SKMLMSGLCPDSIAFVS-------VLSACSHAGLLE--EGRYYFKIMTEQYK 431
                   + +   G   D++ F++       VL+A S A  L         +   + + 
Sbjct: 112 QCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHA 171

Query: 432 LVPRIEHFA------CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
           LV +  H +       LVD+  +  + EEA  +   MP E N   W SL+
Sbjct: 172 LVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMP-ERNIVSWNSLI 220


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 199/565 (35%), Positives = 309/565 (54%), Gaps = 80/565 (14%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF---FNVLIRS 104
           K+LH  +II+     +P I  KL+  Y     + D  H   E  N N++    +N+LI S
Sbjct: 113 KQLHT-LIISLGFEQHPIIVPKLVTFYTNFDLLADA-HTITE--NSNILHPLPWNLLISS 168

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
           YV N L+ +AL  YK M+  G  PD +TYP VLKAC     +  G ++H S+    L +N
Sbjct: 169 YVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWN 228

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA----------------- 207
           LF  N LV+MY K G L  AR +  +M  +D V+WN+M++GYA                 
Sbjct: 229 LFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRV 288

Query: 208 ------------------QNGRFDEALDVCREMESLRIKPDADTMASLLP---------- 239
                             Q+G F+EAL++   M S  I  D D++A+++           
Sbjct: 289 EGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGI--DMDSVATIIGLGACSHIGAI 346

Query: 240 --------SVTNTSPENVLSVKE-----------------MFLKLDNKNLVSWNVMIAVY 274
                   S   +  + V +VK                  +F     KN+++WN M++ Y
Sbjct: 347 KLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGY 406

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK-LQPN 333
            +     EA  L+ +M + GIEPN +++AS+LP C  ++ L  G++ H Y+ R+   +  
Sbjct: 407 THMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDY 466

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
           L L N+LVDMYA+ G + EA+ +FD +  +D V++TS+I+ YG+ G+G +A+ LF +M  
Sbjct: 467 LLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKK 526

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
             + PD +  V+VLSACSH+GL+ EG   F++M   Y ++PR+EHFAC+VDL GRAG + 
Sbjct: 527 RHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLH 586

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           +A ++I +MP  P+  +W +L+ AC ++ N +IG  AA+ +  + P  SGYYVL++N+YA
Sbjct: 587 KAKEMITRMPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYA 646

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPG 538
            AG W  + +VR +M   G++K PG
Sbjct: 647 AAGCWSKLAKVRTYMRDLGVRKAPG 671



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 173/401 (43%), Gaps = 69/401 (17%)

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
           SL  G Q+H  ++ +G + +      LV  Y     L +A  +  +      + WN +++
Sbjct: 108 SLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLIS 167

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS------------------------ 240
            Y +NG   EAL   ++M    I+PD  T  S+L +                        
Sbjct: 168 SYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGW 227

Query: 241 --------VTNTSPENVLSVKE-MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
                   V+  +    LS    +F  +  ++ VSWN MI+ YA+  M  EA +L+ +M 
Sbjct: 228 NLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMR 287

Query: 292 VHGIEPNAI---------------------------------SVASV--LPACGDLSALL 316
           V GIE N I                                 SVA++  L AC  + A+ 
Sbjct: 288 VEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIK 347

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
           LGR+IH    R        ++NAL+ MY++C  L  A  +F   R +++++W SM+S Y 
Sbjct: 348 LGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYT 407

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
              +  +A  LF +ML+SG+ P+ +   S+L  C+    L+ G+ +   +  +      +
Sbjct: 408 HMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYL 467

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             +  LVD+  R+GKV EA  L   +    +E  + SL+A 
Sbjct: 468 LLWNSLVDMYARSGKVLEAKRLFDSISRR-DEVTYTSLIAG 507



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 48/100 (48%)

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           +L +L  G+++H  +     + +  +   LV  Y     L +A T+ +       + W  
Sbjct: 105 NLKSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNL 164

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
           +IS+Y  +G   +A++ + +M   G+ PD   + SVL AC
Sbjct: 165 LISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKAC 204


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 182/499 (36%), Positives = 272/499 (54%), Gaps = 39/499 (7%)

Query: 80  MVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA 139
           M +   VFD+I   N   +N + R Y  N  + D + +++ M      P+C+T+P +LK+
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 140 CSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM-------- 191
           C   N+L  G ++HC V+K G   N F    L+ MY   G +  A RV  +M        
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 192 -----------------------PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
                                  P +D+V WN+M++GY       EA DV R  E     
Sbjct: 121 TAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYI------EAKDVIRARELFDKM 174

Query: 229 PDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
           P+ D M+         S  +V++ + +F ++  +N+ SWN +I  Y  N   +E +  + 
Sbjct: 175 PNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFK 234

Query: 289 QMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
           +M V G + PN  ++ +VL AC  L AL LG+ +H Y E    + N+ + NAL+DMYAKC
Sbjct: 235 RMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKC 294

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           G +  A  VF  M  +D++SW ++I    + G G DA+ LFS M ++G  PD I F+ +L
Sbjct: 295 GVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGIL 354

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
            AC+H GL+E+G  YFK MT+ Y +VPRIEH+ C+VDLLGRAG +  A D I++MP+E +
Sbjct: 355 CACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEAD 414

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527
             IW +L+ AC +Y N+++  LA + +    P     YV+LSNIY   GRW DV R++  
Sbjct: 415 AVIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVA 474

Query: 528 MNSKGIKKMPGAS-VEMND 545
           M   G KK+PG S +E+ND
Sbjct: 475 MRDTGFKKLPGCSLIEVND 493


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 203/623 (32%), Positives = 316/623 (50%), Gaps = 75/623 (12%)

Query: 7   LCRHFSTTKPVQALVLSTQYTLLSG-----DACNDILDKYPDIKTLKKLHAQIIINQHLH 61
           L  H    KP Q   ++   + L            +L+    +  L+++H Q I  + L+
Sbjct: 10  LLHHRHVKKPKQMTTIAATSSALKSFSPPTHPLISLLETCESMDQLQQVHCQAI-KKGLN 68

Query: 62  SNPSIGLKLMRTYGACGQMVD---TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVY 118
           +NP +  ++M T+    +  D    R +FDEI   N+  +N +IR Y         + +Y
Sbjct: 69  ANPVLQNRVM-TFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLY 127

Query: 119 KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC 178
             M   G  PD YT+P + K  +   +L  G Q+H  V+K GL YN+F    LV MY  C
Sbjct: 128 LEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLC 187

Query: 179 GCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA----------------------L 216
           G L  AR V +  P  DV+TWN +++ Y + G+F+E+                      L
Sbjct: 188 GQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVL 247

Query: 217 DVCREMESLR--------------------------IKPDADTMASLLPSVTNTSPENVL 250
             C +++ LR                          +  D   M S L    + +  +++
Sbjct: 248 SACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDII 307

Query: 251 S----------------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
           S                 +  F K+  K+ VSW  MI  Y  ++   EA++L+  M+   
Sbjct: 308 SWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATN 367

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
           ++P+  ++ SVL AC  L AL LG  I  Y++R K++ +L + NAL+DMY KCG + +A 
Sbjct: 368 VKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAE 427

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
           ++F +M  +D  +WT+MI    ++G G  A+ +FS ML + + PD I ++ VLSAC+H G
Sbjct: 428 SIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTG 487

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
           L+++GR YF  MT Q+ + P I H+ CLVDLL RAG+++EAY++I+ MP++ N  +WG+L
Sbjct: 488 LVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGAL 547

Query: 475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534
           +A C +Y   D+  +    I  L P+    YVLL NIYA   RW D++ +R+ M  KGIK
Sbjct: 548 LAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIK 607

Query: 535 KMPGAS-VEMNDQVQIIALPLRS 556
           K PG S +EMN +V       RS
Sbjct: 608 KXPGCSLIEMNGRVHEFVAGDRS 630


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 185/498 (37%), Positives = 298/498 (59%), Gaps = 16/498 (3%)

Query: 68  LKLMRTYGACGQMVDT-RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF 126
            K+M   G  G+  ++   +FD++ +++V+ +N +I  YV+N L    L +YK M   G 
Sbjct: 50  FKIMVEKGIEGKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGI 109

Query: 127 DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR 186
           D D  T   VL  C+ S +L +G  +H   +K   +  +   N L+ MY KCG L  A R
Sbjct: 110 DVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALR 169

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT-S 245
           V   M  ++VV+W SM+AGY ++G  D A+ + ++ME   +K D   + S+L +   + S
Sbjct: 170 VFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGS 229

Query: 246 PENVLSVKEMFLKLDN--KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI-------- 295
            +N   V + ++K +N   NL   N ++ +YA       A  ++  M V  I        
Sbjct: 230 LDNGKDVHD-YIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG 288

Query: 296 --EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
             +P++ ++A +LPAC  LSAL  G++IH Y+ R     +  + NALVD+Y KCG L  A
Sbjct: 289 ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLA 348

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
           R +FD +  +D+VSWT MI+ YGM G G +A+A F++M  +G+ PD ++F+S+L ACSH+
Sbjct: 349 RLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHS 408

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           GLLE+G  +F IM   + + P++EH+AC+VDLL R G + +AY  I+ +P+ P+  IWG+
Sbjct: 409 GLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGA 468

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           L+  C +Y ++++    A+ +F L P  +GYYVLL+NIYA+A +W +VKR+R+ +  KG+
Sbjct: 469 LLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGL 528

Query: 534 KKMPGAS-VEMNDQVQII 550
           +K PG S +E+  +V + 
Sbjct: 529 RKNPGCSWIEIKGRVNLF 546



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 162/335 (48%), Gaps = 41/335 (12%)

Query: 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
           LV+ Y  CG LKE RRV + M  K+V  WN MV+ YA+ G F E++ + + M    I+  
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 231 ADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
               AS                 E+F KL +++++SWN MI+ Y +N +    + +Y QM
Sbjct: 62  RSESAS-----------------ELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQM 104

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
              GI+ +  ++ SVL  C     L LG+ +H    +   +  +   N L+DMY+KCG L
Sbjct: 105 MYLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDL 164

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
             A  VF++M  ++VVSWTSMI+ Y   G    A+ L  +M   G+  D +A  S+L AC
Sbjct: 165 DGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHAC 224

Query: 411 SHAGLLEEGR---YYFKIMTEQYKLVPRIEHFAC--LVDLLGRAGKVEEAYDLIKQM--- 462
           + +G L+ G+    Y K       L      F C  L+D+  + G +E A  +   M   
Sbjct: 225 ARSGSLDNGKDVHDYIKANNMASNL------FVCNALMDMYAKCGSMEGANSVFSTMVVK 278

Query: 463 ----------PMEPNERIWGSLVAACCLYSNMDIG 487
                      ++P+ R    ++ AC   S ++ G
Sbjct: 279 DIISWNTMVGELKPDSRTMACILPACASLSALERG 313



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 105/243 (43%), Gaps = 16/243 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H  I+ N +  S+  +   L+  Y  CG +   R +FD I +K++V + V+I  Y  
Sbjct: 314 KEIHGYILRNGY-SSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGM 372

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ-IHCSVVKVGLDYNLF 166
           +    +A+  +  M   G +PD  ++  +L ACS S  L  G +  +       ++  L 
Sbjct: 373 HGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLE 432

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           +   +V +  + G L +A + +  +P + D   W +++ G       + A  V   +   
Sbjct: 433 HYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERV--F 490

Query: 226 RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL-----VSW-----NVMIAVYA 275
            ++P+      LL ++     E    VK M  K+  K L      SW      V + V  
Sbjct: 491 ELEPENTGYYVLLANIY-AEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSG 549

Query: 276 NNS 278
           NNS
Sbjct: 550 NNS 552


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 189/516 (36%), Positives = 289/516 (56%), Gaps = 46/516 (8%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D +T +++H  +  + H   +  I   L+  Y  C +  D R VFD +  +NVV +N LI
Sbjct: 166 DSRTGEQVHGLVARSPHA-DDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLI 224

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-L 161
             Y  N    +AL ++  M   GF PD  T   V+ AC+G  +   G Q+H  +VK   L
Sbjct: 225 TCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRL 284

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             ++   N LV MY KCG   EAR + + MPS+ +V+  S++ GYA++            
Sbjct: 285 RDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSA----------- 333

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
                                     NV   + +F ++  KN+++WNV+IA YA N    
Sbjct: 334 --------------------------NVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEE 367

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE---- 337
           EA+ L++Q++   I P   +  +VL ACG+++ L LG++ H +V ++  + +   E    
Sbjct: 368 EAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVF 427

Query: 338 --NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
             N+LVDMY K GS+ +   VF++M  +D VSW +MI  Y  +G+  DA+ LF +ML S 
Sbjct: 428 VGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSN 487

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
             PDS+  + VLSAC H+GL++EGR YF  MTE + + P  +H+ C+VDLLGRAG ++EA
Sbjct: 488 ENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEA 547

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
            +LI  MPMEP+  +W SL+ AC L+ N+++G   A  +F L P  SG YVLLSN+YA+ 
Sbjct: 548 EELINDMPMEPDSVLWASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEM 607

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           G+W +V RVR+ M  +G+ K PG S +E+  ++ + 
Sbjct: 608 GKWAEVFRVRRSMKDRGVSKQPGCSWIEIGRKMNVF 643



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 147/313 (46%), Gaps = 39/313 (12%)

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  ++K  +    F  N LV+ Y + G L++ARRV +++P ++  ++N++++ YA+ GR 
Sbjct: 40  HARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRP 99

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIA 272
           DEA                                     + +F  + + +  S+N ++A
Sbjct: 100 DEA-------------------------------------RALFEAIPDPDQCSYNAVVA 122

Query: 273 VYANNSM--PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
             A +     A+A+     M       NA S AS L AC        G ++H  V R   
Sbjct: 123 ALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPH 182

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
             ++ + +ALVDMYAKC    +AR VFD M  ++VVSW S+I+ Y  +G   +A+ LF +
Sbjct: 183 ADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVE 242

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450
           M+ +G  PD +   SV+SAC+      EGR     M +  +L   +     LVD+  + G
Sbjct: 243 MMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCG 302

Query: 451 KVEEAYDLIKQMP 463
           +  EA  +   MP
Sbjct: 303 RTWEARCIFDSMP 315



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 38/218 (17%)

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           +A +L +  +LS     R  H  + +  +     L N LV  YA+ G L +AR VFD++ 
Sbjct: 23  LADLLRSAPNLSG---ARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIP 79

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC-----------------PDSIAFV 404
            ++  S+ +++SAY   G+  +A ALF  +     C                  D++ F+
Sbjct: 80  LRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFL 139

Query: 405 S-------VLSACSHAGLLE--EGRYYFKIMTEQYKLVPRIEHF------ACLVDLLGRA 449
           +       VL+A S A  L         +   + + LV R  H       + LVD+  + 
Sbjct: 140 AAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKC 199

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
            + E+A  +   MP E N   W SL+   C   N  +G
Sbjct: 200 ERPEDARRVFDAMP-ERNVVSWNSLIT--CYEQNGPVG 234


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 190/534 (35%), Positives = 304/534 (56%), Gaps = 71/534 (13%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VFD I   N++ +N + R +  +     AL +Y  M   G  PD YT+P +LK+C+ S  
Sbjct: 45  VFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKI 104

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN---------------- 189
              G QIH  V+K+G D +++    L++MY + G L++AR+V +                
Sbjct: 105 RKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAG 164

Query: 190 ---------------DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL-RIKPDADT 233
                          ++P KDVV+WN+M++GY + G + EAL++ +EM  +  ++PD  T
Sbjct: 165 YVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDEST 224

Query: 234 MASLLPS----------------------VTNTSPENVL-----------SVKEMFLKLD 260
           M +++ +                       +N    N L           +  E+F  L 
Sbjct: 225 MVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLW 284

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
           NK+++SWN +I  Y + ++  EA+ L+ +M   G  PN +++ S+LPAC  L A+ +GR 
Sbjct: 285 NKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 344

Query: 321 IHRYVERK--KLQPNLR-LENALVDMYAKCGSLTEARTVFDQ-MRCQDVVSWTSMISAYG 376
           IH Y+ +K   +  N+  L+ +L+DMYAKCG +  A+ VFD  M  + + +W +MIS + 
Sbjct: 345 IHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFA 404

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
           M G+   A  +FS+M M+G+ PD I FV +LSACSH+G+L+ GR  F+ MT  Y++ P++
Sbjct: 405 MHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKL 464

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           EH+ C++DLLG +G  +EA ++I  MPMEP+  IW SL+ AC ++ N+++G   A  +  
Sbjct: 465 EHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIK 524

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI-KKMPG-ASVEMNDQVQ 548
           + P  SG YVLLSNIYA AGRW +V ++R  +N KG+ KK+PG +S+E++  V 
Sbjct: 525 IEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVH 578



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 169/351 (48%), Gaps = 42/351 (11%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV-HGFDP 128
           L+  Y + G +   + +FDEI  K+VV +N +I  YV    Y +AL ++K M +     P
Sbjct: 161 LIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRP 220

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D  T   V+ AC+ S+S+ +G  +H  +   G   NL   N L+ +Y K G ++ A  + 
Sbjct: 221 DESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELF 280

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS-------- 240
           + + +KDV++WN+++ GY     + EAL + +EM      P+  TM S+LP+        
Sbjct: 281 DGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 340

Query: 241 ----------------VTNTSPENVLSVKEMFLK--------------LDNKNLVSWNVM 270
                           VTN S     S+ +M+ K              + N++L +WN M
Sbjct: 341 IGRWIHVYINKKLKGVVTNVSSLQT-SLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAM 399

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-K 329
           I+ +A +     A D++ +M ++GIEP+ I+   +L AC     L LGR I R + R  +
Sbjct: 400 ISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYE 459

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSG 379
           + P L     ++D+    G   EA  + + M  + D V W S++ A  + G
Sbjct: 460 ITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHG 510



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 151/316 (47%), Gaps = 16/316 (5%)

Query: 51  HAQIIINQH-LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           H    IN H   SN  I   L+  Y   G++     +FD + NK+V+ +N LI  Y +  
Sbjct: 243 HVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMN 302

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK--VGLDYNLFN 167
           LY +AL +++ M   G  P+  T   +L AC+   ++ +G  IH  + K   G+  N+ +
Sbjct: 303 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSS 362

Query: 168 -GNGLVAMYGKCGCLKEARRVLN-DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
               L+ MY KCG +  A++V +  M ++ + TWN+M++G+A +GR + A D+   M   
Sbjct: 363 LQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMN 422

Query: 226 RIKPDADTMASLLPSVTNTS----PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
            I+PD  T   LL + +++       N+        ++  K L  +  MI +  ++ +  
Sbjct: 423 GIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPK-LEHYGCMIDLLGHSGLFK 481

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
           EA ++   M    +EP+ +   S+L AC     L LG    + +   K++P       L+
Sbjct: 482 EAEEMINTMP---MEPDGVIWCSLLKACKIHGNLELGESFAKKL--IKIEPGNSGSYVLL 536

Query: 342 -DMYAKCGSLTEARTV 356
            ++YA  G   E   +
Sbjct: 537 SNIYAAAGRWNEVAKI 552



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 56/105 (53%), Gaps = 5/105 (4%)

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           A +VFD ++  +++ W +M   + +S     A+ L+  M+  GL PDS  F  +L +C+ 
Sbjct: 42  AISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAK 101

Query: 413 AGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEA 455
           + + +EG+   +I     KL   ++ +    L+ +  + G++E+A
Sbjct: 102 SKIRKEGQ---QIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDA 143


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 193/576 (33%), Positives = 316/576 (54%), Gaps = 73/576 (12%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD----TRHVFDEITNKNVVFFN 99
           +++L+ +HAQ+I    LH N +  L  +  +       D       VF+ I   N++ +N
Sbjct: 15  LQSLRMIHAQMI-KTGLH-NTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWN 72

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            + R +  +     AL++Y  M   G  P+CYT+P +LK+C+ S +   G QIH  V+K+
Sbjct: 73  TMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKL 132

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLN------------------------------ 189
           G D +L+    L++MY + G L++AR+V +                              
Sbjct: 133 GYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMF 192

Query: 190 -DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP-- 246
            ++P KDVV+WN+M++GYA+ G   EAL++ +EM    ++PD  TM S++ +   ++   
Sbjct: 193 DEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIE 252

Query: 247 -------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
                                            V +   +F  L  K+++SWN +I  Y 
Sbjct: 253 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYT 312

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER--KKLQPN 333
           + ++  EA+ L+ +M   G  PN +++ S+LPAC  L A+ +GR IH Y+ +  K +   
Sbjct: 313 HMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANA 372

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
                +L+DMYAKCG +  A+ VFD +  + + SW +MI  + M G+   A  +FS+M  
Sbjct: 373 SSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRK 432

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           + + PD I FV +LSACSH+G+L+ GR+ F+ M E YK+ P++EH+ C++DLLG +G  +
Sbjct: 433 NEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFK 492

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA ++I  M MEP+  IW SL+ AC +Y+N+++G   A ++  + P   G YVLLSNIYA
Sbjct: 493 EAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYA 552

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
            AGRW +V ++R  +N KG+KK+PG +S+E++  V 
Sbjct: 553 TAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVH 588


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 185/510 (36%), Positives = 294/510 (57%), Gaps = 13/510 (2%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK--------NV 95
           + TLK +H+ +     L   P    +L+  Y   G +   R +FD   +         N 
Sbjct: 38  LTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNS 97

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
              N ++R+Y N    Y+A+ +Y  M   G   + +TYP VLK C+     + G  +H  
Sbjct: 98  FLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQ 157

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           VV+ G   +LF    LV MY KCG + +A  V + M  +DVV W +M+  Y Q  R  +A
Sbjct: 158 VVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKA 217

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPEN--VLSVKEMFLKLDNKNLVSWNVMIAV 273
           L + R+M+      D  T  S+  +V         +   + +F +++ +N +SWN M++ 
Sbjct: 218 LMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGISWNSMLSG 277

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           Y  N  P +A+ L+ QM+    +PN ++   ++ AC  L +  LGRK+H +V   K+  +
Sbjct: 278 YTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDID 337

Query: 334 LRLENALVDMYAKCGSLTEARTVFD--QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
             L NA++DMY KCG L  A  +F+  ++  +DV SW  +IS YG+ G G +A+ LFS+M
Sbjct: 338 TTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRM 397

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
            + G+ P+ I F S+LSACSHAGL++EGR  F  MT +  + P ++H+AC+VD+LGRAG 
Sbjct: 398 QVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMT-KLSVRPEMKHYACMVDMLGRAGF 456

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
           + EA+ LIK++P  P++ +WG+L+ AC ++ N ++G +AA+++F L P  +GYYVL+SNI
Sbjct: 457 LNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNI 516

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           YA + +W +V+ VR+ M S+G+KK    SV
Sbjct: 517 YAASNKWKEVEMVRQNMKSRGLKKPAAFSV 546


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 196/555 (35%), Positives = 308/555 (55%), Gaps = 40/555 (7%)

Query: 34  CNDILDKYPDIKTLKK---LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI 90
           C  +L    + K+L +   LHA +     L  N  +  KL   Y  CG M   +H+FD+I
Sbjct: 25  CGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQI 84

Query: 91  TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGL 150
             KN   +N +IR Y  N     AL +Y  M   G  PD +TYP VLKAC       +G 
Sbjct: 85  VLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGR 144

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
           ++H  VV  GL+ +++ GN +++MY K G ++ AR V + M  +D+ +WN+M++G+ +NG
Sbjct: 145 KVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNG 204

Query: 211 RFDEALDVCREMESLRIKPDADTMASLLPSVTNT-------------------------- 244
               A +V  +M       D  T+ +LL +  +                           
Sbjct: 205 EARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGF 264

Query: 245 ----------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
                     + E+V   +++F  L  K++VSWN +I+ Y       +A++L+ +M V G
Sbjct: 265 LMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVG 324

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
             P+ ++V SVL AC  +SAL LG  +  YV ++    N+ +  AL+ MYA CGSL  A 
Sbjct: 325 AVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCAC 384

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            VFD+M  +++ + T M++ +G+ G+G +A+++F +ML  G+ PD   F +VLSACSH+G
Sbjct: 385 RVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSG 444

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
           L++EG+  F  MT  Y + PR  H++CLVDLLGRAG ++EAY +I+ M ++PNE +W +L
Sbjct: 445 LVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTAL 504

Query: 475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534
           ++AC L+ N+ + +++A  +F L P+    YV LSNIYA   RW DV+ VR  +  + ++
Sbjct: 505 LSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLR 564

Query: 535 KMPGAS-VEMNDQVQ 548
           K P  S VE+N  V 
Sbjct: 565 KPPSYSFVELNKMVH 579


>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 600

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 193/537 (35%), Positives = 304/537 (56%), Gaps = 43/537 (8%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFF--N 99
           P +  L++LHAQ++    LH +P    KL+ +Y    ++  +R VF    N +   F  N
Sbjct: 35  PRLHHLQELHAQLL-KHGLHLDPVAASKLLSSYALHRRLPASRGVFASFPNPHATTFLPN 93

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            L+R+Y  N L  +A+ V+  M       D +TY  ++KA S S  +     +H  VVK+
Sbjct: 94  TLLRAYALNALPREAVAVFSAMP----HRDSFTYSFLIKALS-SAGVAPLRAVHSHVVKL 148

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G   + + GN L+  Y K G   +A +V  +MP +DVV+WNS +A   + G  + A  + 
Sbjct: 149 GSIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMF 208

Query: 220 REMESLRIKPDADTMASLLPSVTNTS------------PE-NVLS--------------- 251
            EM    ++ D  +  +LL   T               PE NV+S               
Sbjct: 209 DEM----LEKDTVSWNTLLDGYTKAGDVEEAFKLFQCMPERNVVSWSTVVSGYCKKGDME 264

Query: 252 -VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
             + +F K+  KNLV+W +M++  A N +  EA  L+ QM+   +E +  +V S+L AC 
Sbjct: 265 MARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVAAVVSILAACA 324

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD-QMRCQDVVSWT 369
           +  +L LG++IHRYV  ++L  +  + NAL+DM+ KCG +  A  VFD ++  +D VSW 
Sbjct: 325 ESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWN 384

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           ++I  + M G G  A+  F++M + G CPD++  ++VLSAC+H G +EEGR YF  M   
Sbjct: 385 TIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGRRYFANMERD 444

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y +VP+IEH+ C++DLLGR G ++EA DLIK MP +PNE IWGSL++AC L+ N++   +
Sbjct: 445 YGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEI 504

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMND 545
           A + +  L P+ +G Y +LS+IYA+AG+W D+ + R  M   G +K  G+S +E+++
Sbjct: 505 AVNELSKLQPSNAGNYAVLSSIYAEAGKWSDMAKARMQMKGTGSQKSSGSSWIELDE 561


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 197/588 (33%), Positives = 307/588 (52%), Gaps = 70/588 (11%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD---TRHVFDEITNK 93
           +L+    +  L+++H Q I  + L++NP +  ++M T+    +  D    R +FDEI   
Sbjct: 24  LLETCESMDQLQQVHCQAI-KKGLNANPVLQNRVM-TFCCTHEYGDFQYARRLFDEIPEP 81

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           N+  +N +IR Y         + +Y  M   G  PD YT+P + K  +   +L  G Q+H
Sbjct: 82  NLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLH 141

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
             V+K GL YN+F    LV MY  CG L  AR V +  P  DV+TWN +++ Y + G+F+
Sbjct: 142 GHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFE 201

Query: 214 EA----------------------LDVCREMESLR------------------------- 226
           E+                      L  C +++ LR                         
Sbjct: 202 ESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMI 261

Query: 227 -IKPDADTMASLLPSVTNTSPENVLS----------------VKEMFLKLDNKNLVSWNV 269
            +  D   M S L    + +  +++S                 +  F K+  K+ VSW  
Sbjct: 262 DMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTA 321

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           MI  Y  ++   EA++L+  M+   ++P+  ++ SVL AC  L AL LG  I  Y++R K
Sbjct: 322 MIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNK 381

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           ++ +L + NAL+DMY KCG + +A ++F +M  +D  +WT+MI    ++G G  A+ +FS
Sbjct: 382 IKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFS 441

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
            ML + + PD I ++ VLSAC+H GL+++GR YF  MT Q+ + P I H+ CLVDLL RA
Sbjct: 442 NMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARA 501

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G+++EAY++I+ MP++ N  +WG+L+A C +Y   D+  +    I  L P+    YVLL 
Sbjct: 502 GRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLC 561

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           NIYA   RW D++ +R+ M  KGIKK PG S +EMN +V       RS
Sbjct: 562 NIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRS 609


>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
          Length = 914

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 191/522 (36%), Positives = 296/522 (56%), Gaps = 32/522 (6%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFF--N 99
           P    +++LHAQ++  Q LH NP    +L+  Y     +  +R VFD I + +   F  N
Sbjct: 363 PRAAHVRELHAQVL-KQGLHLNPRAAARLVSAYALLRLLPSSRRVFDAIRDPHADAFLAN 421

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            ++R+Y       DAL  +  M       D +TY  ++KA S +    V   +H  VVK+
Sbjct: 422 TMLRAYALGGAPRDALAAFSAMPRR----DSFTYSFLIKALSAAGVAPV-RAVHSHVVKL 476

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G   + F GN L+  Y K G   +AR+V ++MP +DVV+WN+ +A   + G    A  + 
Sbjct: 477 GSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLF 536

Query: 220 REMESLRIKPDADTMA--SLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN- 276
            EM      P+ DT++  ++L   T      V +  E+F ++  +N+VSW+ M++ Y   
Sbjct: 537 DEM------PEKDTVSWNTILDGYTKAG--EVEAAFELFQRMPERNVVSWSTMVSGYCKK 588

Query: 277 ----------NSMPAEA-VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
                     + MP +  V   + M+   +E +  +V S+L AC +  +L LG++IHRYV
Sbjct: 589 GDLEMARVIFDKMPGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYV 648

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYDA 384
            ++ L  +  + NAL+DM+ KCG +  A  VFD    Q D VSW S+I  + M G G  A
Sbjct: 649 RKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKA 708

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           + LF++M   G  PD++  ++VLSAC+H G ++EGR YF  M   Y ++P+IEH+ C++D
Sbjct: 709 LELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMID 768

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY 504
           LLGR G ++EA DLIK MP EPNE IWGSL++AC L+ N++   +A + +  L P+ +G 
Sbjct: 769 LLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGN 828

Query: 505 YVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMND 545
           Y +LSNIYA+AG+W D+ + R  M   G +K  G+S VE+N+
Sbjct: 829 YAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNE 870


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 198/577 (34%), Positives = 321/577 (55%), Gaps = 73/577 (12%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT-NKNVVFFNVLIRSY 105
           L KLH+ +II   LH +     KL+  Y        +  VF   + + NV  +N +IR+ 
Sbjct: 32  LHKLHS-LIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRAL 90

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
            +N L+ +AL +Y         PD YT+P V+ AC+G     +   IH  V+ +G   +L
Sbjct: 91  THNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDL 150

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE---- 221
           + GN L+ MY +   L +AR+V  +MP +DVV+WNS+++GY  NG ++EAL++  +    
Sbjct: 151 YIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKL 210

Query: 222 -MESL-RIKPDADTMASLLPSV----------------------TNTSPENVL------- 250
            ME + + KPD  T+ S+L +                        +T+  N+L       
Sbjct: 211 FMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKC 270

Query: 251 ----SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME--------------V 292
               + +E+F  +  K+ VSWN MI VY  N    +++ ++  M+              V
Sbjct: 271 GNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCV 330

Query: 293 H-----------------GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
           H                 G+ P+  ++ S+LP C  L+A   G++IH  + +  L+ ++ 
Sbjct: 331 HSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVP 390

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           + N L++MY+KCGSL  +  VF  M+ +DVV+WT++ISA GM G+G  AV  F +M  +G
Sbjct: 391 VGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAG 450

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + PD +AFV+++ ACSH+GL+EEG  YF  M + YK+ PRIEH+AC+VDLL R+  +++A
Sbjct: 451 IVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKA 510

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
            D I  MP++P+  IWG+L++AC +  + +I    ++ I  L P+ +GYYVL+SNIYA  
Sbjct: 511 EDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAAL 570

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIA 551
           G+W  V+ +RK + ++G+KK PG S +E+ ++V +  
Sbjct: 571 GKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFG 607



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 164/346 (47%), Gaps = 29/346 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y   G+M D+  VF+ +  ++++ +N +I S V++      L +   M   G  PD
Sbjct: 294 MINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPD 353

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   +L  CS   +   G +IH  + K+GL+ ++  GN L+ MY KCG L+ + +V  
Sbjct: 354 MATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFK 413

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS--PE 247
            M +KDVVTW ++++     G   +A+    EME+  I PD     +++ + +++    E
Sbjct: 414 LMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEE 473

Query: 248 NVLSVKEMFLKLDNK---NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
            +     M  K D K    +  +  ++ + + +++  +A D  L M    ++P++    +
Sbjct: 474 GLNYFHRM--KKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMP---LKPDSSIWGA 528

Query: 305 VLPAC---GDLSALLLGRKIHRYVERKKLQPNLRLENALV-DMYAKCGSLTEARTVFDQM 360
           +L AC   GD    +  R   R +E   L P+      LV ++YA  G   + R++   +
Sbjct: 529 LLSACRMSGDTE--IAERVSERIIE---LNPDDTGYYVLVSNIYAALGKWDQVRSIRKSI 583

Query: 361 RCQDV-----VSWTSM---ISAYGMSGQGYDAVALFSKML--MSGL 396
           + + +      SW  +   +  +G   + ++     +K+L  ++GL
Sbjct: 584 KARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGL 629


>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 191/552 (34%), Positives = 301/552 (54%), Gaps = 45/552 (8%)

Query: 41  YPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           +  +K  ++ H++I+ +  L  N  +  KL+  Y  C     +R VFD + +KNV  +N 
Sbjct: 36  HKSLKLTRQSHSRIL-SLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNS 94

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           LI   V N LY +A  ++  M      PD +T   + K  S   +L  G  IH   ++ G
Sbjct: 95  LINGCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTG 154

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF---DEALD 217
              +    N +++MY KCG   E+R+V ++M  ++  +WN ++AGYA +G     +E  +
Sbjct: 155 FVSDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWE 214

Query: 218 VCREMESLRIKPDADTMASLLP------------------SVTN---------------- 243
             ++M+   ++PDA T++SLLP                   V N                
Sbjct: 215 FVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCL 274

Query: 244 ----TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV-HGIEPN 298
               +    V+  + +F ++  +N+ SW  MI  Y  N    EA+ L+  M+V  G+EPN
Sbjct: 275 IDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPN 334

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF- 357
            +S+ SVLPAC   S LL GR+IH +  RK+L   + L NAL+DMY+KCGSL  AR VF 
Sbjct: 335 RVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFE 394

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           D   C+D +SW+SMIS YG+ G+G +A+ L+ KML +G+ PD I  V +LSAC  +GL+ 
Sbjct: 395 DDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACGRSGLVN 454

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           EG   +  +   Y + P +E  AC+VD+LGRAG+++ A D IK +P+EP   +WG+LV+ 
Sbjct: 455 EGLNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDFIKAIPVEPGPSVWGALVSC 514

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
             ++ ++++  LA   +  L P     YV +SN+YA + RW  V  VR+ M  K ++K+P
Sbjct: 515 SIIHGDLEMQELAYRFLIQLEPKNPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVP 574

Query: 538 GAS-VEMNDQVQ 548
           G S + +N++  
Sbjct: 575 GCSWISINNKTH 586


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 198/554 (35%), Positives = 296/554 (53%), Gaps = 42/554 (7%)

Query: 32  DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
           D  N +L +   IK LK++HAQ++ N  +H   S   K+          V     F  I 
Sbjct: 33  DKFNSLLQQCLSIKQLKQIHAQLLTNS-IHKPNSFLYKIADLKDFAYASV----FFSNIL 87

Query: 92  NKNVVFFNVLIRSYVNNYLYYD-ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGL 150
           +     FNV+IR     +     AL  Y  M   G  P+  TYP +  ACS   ++  G 
Sbjct: 88  DPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGR 147

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
             HCSV++ GLD +    + L+ MY +CG + +AR+V +++  KD+V+WNSM++GY++  
Sbjct: 148 MGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMR 207

Query: 211 RFDEALDVCREMESLRIKPDADTMASLLPS-----------------VTNTSPEN----- 248
              EA+ + REM     +P+  ++ S+L +                 V N    N     
Sbjct: 208 HAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGS 267

Query: 249 -----------VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297
                      ++S + +F  +  K+ V+WN MI  YA N M  EA+ L+  M +    P
Sbjct: 268 ALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAP 327

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           + I++  +L AC  + AL LG+++  Y   +  Q ++ +  ALVDMYAKCGSL  A  VF
Sbjct: 328 DQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVF 387

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG--LCPDSIAFVSVLSACSHAGL 415
             M  ++ VSW +MISA    GQ  +A+ALF  M+  G  + P+ I FV VLSAC HAGL
Sbjct: 388 YGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGL 447

Query: 416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
           ++EGR  F +M+  + LVP+IEH++C+VDL  RAG +EEA+D +  MP +P+E I G+L+
Sbjct: 448 VDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALL 507

Query: 476 AACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK 535
            AC    N+DI       +  L P+ SG YV+ S +YA   RW D  R+R  M  KG+ K
Sbjct: 508 GACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSK 567

Query: 536 MPGAS-VEMNDQVQ 548
            PG S +++N Q+ 
Sbjct: 568 TPGCSWIDINSQLH 581


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 198/554 (35%), Positives = 296/554 (53%), Gaps = 42/554 (7%)

Query: 32  DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
           D  N +L +   IK LK++HAQ++ N  +H   S   K+          V     F  I 
Sbjct: 33  DKFNSLLQQCLSIKQLKQIHAQLLTNS-IHKPNSFLYKIADLKDFAYASV----FFSNIL 87

Query: 92  NKNVVFFNVLIRSYVNNYLYYD-ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGL 150
           +     FNV+IR     +     AL  Y  M   G  P+  TYP +  ACS   ++  G 
Sbjct: 88  DPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGR 147

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
             HCSV++ GLD +    + L+ MY +CG + +AR+V +++  KD+V+WNSM++GY++  
Sbjct: 148 MGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMR 207

Query: 211 RFDEALDVCREMESLRIKPDADTMASLLPS-----------------VTNTSPEN----- 248
              EA+ + REM     +P+  ++ S+L +                 V N    N     
Sbjct: 208 HAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGS 267

Query: 249 -----------VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297
                      ++S + +F  +  K+ V+WN MI  YA N M  EA+ L+  M +    P
Sbjct: 268 ALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAP 327

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           + I++  +L AC  + AL LG+++  Y   +  Q ++ +  ALVDMYAKCGSL  A  VF
Sbjct: 328 DQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVF 387

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG--LCPDSIAFVSVLSACSHAGL 415
             M  ++ VSW +MISA    GQ  +A+ALF  M+  G  + P+ I FV VLSAC HAGL
Sbjct: 388 YGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGL 447

Query: 416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
           ++EGR  F +M+  + LVP+IEH++C+VDL  RAG +EEA+D +  MP +P+E I G+L+
Sbjct: 448 VDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALL 507

Query: 476 AACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK 535
            AC    N+DI       +  L P+ SG YV+ S +YA   RW D  R+R  M  KG+ K
Sbjct: 508 GACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSK 567

Query: 536 MPGAS-VEMNDQVQ 548
            PG S +++N Q+ 
Sbjct: 568 TPGCSWIDINSQLH 581


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  347 bits (890), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 184/499 (36%), Positives = 275/499 (55%), Gaps = 44/499 (8%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACG---QMVDTRHVFDEITNK 93
           +L  +     LK+LHA ++      ++P   L L R    C         + +F  +   
Sbjct: 21  LLHNFTSPFELKQLHAHLLKT----NSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDAS 76

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
            V  +N  +RS+       DA+ ++  +      PD YT   VLKACS    +  G  +H
Sbjct: 77  EVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVH 136

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
             V K+GL  N+F  N +V +Y  CG +  AR+V + MP +DV+TWN M+A   + G   
Sbjct: 137 GYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMG--- 193

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273
                           DA+                     ++F ++  +N+ SW  MI  
Sbjct: 194 ----------------DAE------------------GAYKLFAEMPERNVRSWTSMIGG 219

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           YA      EA+DL+L+ME  G+ PN ++V +VL AC D+  L+LGR+IH +  R   + N
Sbjct: 220 YAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKN 279

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
           +R+ N L+DMY KCG L +A  +FD M  + VVSW++MI+     G+  DA+ALF+KM+ 
Sbjct: 280 IRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMIN 339

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           +G+ P+++ F+ +L ACSH G++E+GR YF  MT  Y +VPRIEH+ C+VDL  RAG ++
Sbjct: 340 TGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQ 399

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA++ I  MP+ PN  +WG+L+  C ++ N+ +   A  H+  L P   GYYV+LSNIYA
Sbjct: 400 EAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYA 459

Query: 514 KAGRWGDVKRVRKFMNSKG 532
           +AGRW DV RVRK M  +G
Sbjct: 460 EAGRWEDVARVRKLMRDRG 478



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 177/384 (46%), Gaps = 51/384 (13%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC+ +LD    ++  K +H  +     L SN  +   ++  Y  CG++   R VFD++  
Sbjct: 122 ACSRLLD----VRNGKIVHGYVE-KLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQ 176

Query: 93  KNVVFFNVLI------------------------RSYVNNYLYY-------DALHVYKNM 121
           ++V+ +N++I                        RS+ +    Y       +A+ ++  M
Sbjct: 177 RDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEM 236

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              G  P+  T   VL AC+   +L++G +IH    + G + N+   N L+ MY KCGCL
Sbjct: 237 EDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCL 296

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
           ++A R+ ++M  + VV+W++M+AG A +GR ++AL +  +M +  +KP+A T   +L + 
Sbjct: 297 EDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHAC 356

Query: 242 TNTSPENVLSVKEMFLKLDNK-----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE 296
           ++     V   ++ F  +         +  +  M+ +++   +  EA +  + M    I 
Sbjct: 357 SHMGM--VEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMP---IA 411

Query: 297 PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP-NLRLENALVDMYAKCGSLTEART 355
           PN +   ++L  C     + L  +  R++   KL P N      L ++YA+ G   +   
Sbjct: 412 PNGVVWGALLGGCKVHKNVKLAEEATRHLS--KLDPLNDGYYVVLSNIYAEAGRWEDVAR 469

Query: 356 VFDQMRCQDVVSWTSMISAYGMSG 379
           V   MR  D  +W  ++    + G
Sbjct: 470 VRKLMR--DRGTWEKLLQRMKLKG 491


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  347 bits (890), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 186/534 (34%), Positives = 294/534 (55%), Gaps = 71/534 (13%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VF+ I   N++ +N ++R + ++     AL +Y  M   G  P+ Y++P +LK+C+ S +
Sbjct: 20  VFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKA 79

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN---------------- 189
              G QIH  V+K+G   + +    L++MY + G L++AR+V +                
Sbjct: 80  FEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITG 139

Query: 190 ---------------DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
                          ++  +DVV+WN+M+ GY +NGR++EAL++ +EM    ++PD  T+
Sbjct: 140 YASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTL 199

Query: 235 ASLLPSVTNTSP-------------------------------------ENVLSVKEMFL 257
            S++ +   +                                        +V +   +F 
Sbjct: 200 VSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFE 259

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
            L  K++VSWN +I  Y + ++  EA+ L+ +M   G  PN +++ SVLPAC  L A+ +
Sbjct: 260 GLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDI 319

Query: 318 GRKIHRYVERK--KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
           GR IH Y+++K   +     L  +L+DMYAKCG +  A  VF+ M  + + SW +MI  +
Sbjct: 320 GRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGF 379

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
            M G+   A  LFS+M  + + PD I FV +LSACSH+GLL+ GR  FK MT+ Y L P+
Sbjct: 380 AMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPK 439

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
           +EH+ C++DLLG +G  +EA ++I  MPMEP+  IW SL+ AC  + N+++    A  + 
Sbjct: 440 LEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLI 499

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
            + P  SG YVLLSNIYA AGRW DV RVR  +N KG+KK+PG +S+E++  V 
Sbjct: 500 KIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVH 553



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 161/346 (46%), Gaps = 41/346 (11%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y + G     R VFDEIT ++VV +N +I  YV N  Y +AL ++K M      PD
Sbjct: 136 LITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPD 195

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKV----GLDYNLFNGNGLVAMYGKCGCLKEAR 185
             T   V+ AC+ S S+ +G Q+H  V       G   +L   N L+ +Y KCG ++ A 
Sbjct: 196 EGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAF 255

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS----- 240
            +   +  KDVV+WN+++ GY     + EAL + +EM      P+  T+ S+LP+     
Sbjct: 256 GLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLG 315

Query: 241 ------------------VTNTSP------------ENVLSVKEMFLKLDNKNLVSWNVM 270
                             VTN +              ++ +  ++F  +  ++L SWN M
Sbjct: 316 AIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAM 375

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-K 329
           I  +A +     A DL+ +M  + +EP+ I+   +L AC     L LGR+I + + +   
Sbjct: 376 IFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYN 435

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
           L P L     ++D+    G   EA  +   M  + D V W S++ A
Sbjct: 436 LTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKA 481



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 119/259 (45%), Gaps = 21/259 (8%)

Query: 11  FSTTKPVQALVLSTQYTLLSGDACNDI--LDKYPDIKTLKKLHA----QIIINQHLH--- 61
           ++ T   +  +L  Q  L SG+  ND+  L   P    L  +       + I++ L    
Sbjct: 276 YTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVT 335

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           +  S+   L+  Y  CG +     VF+ +  +++  +N +I  +  +     A  ++  M
Sbjct: 336 NETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRM 395

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF----NGNGLVAMYGK 177
             +  +PD  T+  +L ACS S  L +G QI  S+ +   DYNL     +   ++ + G 
Sbjct: 396 RGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQ---DYNLTPKLEHYGCMIDLLGH 452

Query: 178 CGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS 236
            G  KEA  +++ MP + D V W S++    ++G  + A    +++  ++I+P+      
Sbjct: 453 SGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKL--IKIEPENSGSYV 510

Query: 237 LLPSVTNTSP--ENVLSVK 253
           LL ++  T+   E+V  V+
Sbjct: 511 LLSNIYATAGRWEDVARVR 529



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 56/105 (53%), Gaps = 5/105 (4%)

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           A +VF+ ++  +++ W +M+  +  S     A+ ++ +M+  G  P+S +F  +L +C+ 
Sbjct: 17  AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAK 76

Query: 413 AGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEA 455
           +   EEGR   +I  +  KL   ++ +    L+ +  R G +E+A
Sbjct: 77  SKAFEEGR---QIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDA 118


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 199/574 (34%), Positives = 323/574 (56%), Gaps = 40/574 (6%)

Query: 12  STTKPVQAL-VLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKL 70
           S  K +Q L V+   YT      C   L K   +K  K++H   ++     SN ++   L
Sbjct: 181 SLFKKMQKLGVVGNCYTFTCVLKCFAALGK---VKECKRVHG-YVLKLGFGSNTAVVNSL 236

Query: 71  MRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDC 130
           +  Y   G +    ++FDE++  +VV +N +I   V N    + L ++  M + G + D 
Sbjct: 237 IAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDL 296

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
            T   VL AC+   +L +G  +H   VK      +   N L+ MY KCG L  A  V   
Sbjct: 297 TTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVK 356

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV--------- 241
           M    +V+W S++A Y + G + +A+ +  EM+S  ++PD  T+ S++ +          
Sbjct: 357 MGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKG 416

Query: 242 -------------TNTSPENVL--------SVKE---MFLKLDNKNLVSWNVMIAVYANN 277
                        +N    N L        SV+E   +F K+  K++VSWN MI  Y+ N
Sbjct: 417 RDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQN 476

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
            +P EA++L+L M+    +P+ I++A VLPAC  L+AL  GR+IH ++ R+    +L + 
Sbjct: 477 LLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVA 535

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
            ALVDMYAKCG L  A+ +FD +  +D++SWT MI+ YGM G G +A++ F++M ++G+ 
Sbjct: 536 CALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIE 595

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
           PD  +F ++L+ACSH+GLL EG  +F  M  +  + P++EH+AC+VDLL R G + +AY 
Sbjct: 596 PDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYK 655

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
            I+ MP++P+  IWG L++ C ++ ++ +    A+HIF L P+ + YYV+L+N+YA+A +
Sbjct: 656 FIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEK 715

Query: 518 WGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           W +VK++RK M  +G K+ PG S +E+  +  I 
Sbjct: 716 WEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIF 749



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 156/543 (28%), Positives = 264/543 (48%), Gaps = 47/543 (8%)

Query: 7   LCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTL---KKLHAQIIINQHLHSN 63
            C        ++ L  S  Y L     C+ +L    + K+L   K++H+ +II+  +  +
Sbjct: 71  FCEMGDLRNAIELLTKSKSYELGLNSYCS-VLQLCAEKKSLEDGKRVHS-VIISNGISVD 128

Query: 64  PSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV 123
            ++G KL+  Y  CG +V  R +FD+I N  V  +N+L+  Y     + +++ ++K M  
Sbjct: 129 EALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQK 188

Query: 124 HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183
            G   +CYT+ CVLK  +    +    ++H  V+K+G   N    N L+A Y K G ++ 
Sbjct: 189 LGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVES 248

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           A  + +++   DVV+WNSM+ G   NG     L++  +M  L ++ D  T+ S+L +  N
Sbjct: 249 AHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACAN 308

Query: 244 T------------------SPENVLS---------------VKEMFLKLDNKNLVSWNVM 270
                              S E V S                 E+F+K+ +  +VSW  +
Sbjct: 309 IGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSI 368

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
           IA Y    + ++A+ L+ +M+  G+ P+  +V S++ AC   S+L  GR +H YV +  +
Sbjct: 369 IAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGM 428

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
             NL + NAL++MYAKCGS+ EAR VF ++  +D+VSW +MI  Y  +    +A+ LF  
Sbjct: 429 GSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLD 488

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFAC-LVDLLGR 448
           M      PD I    VL AC+    L++GR  +  I+   Y       H AC LVD+  +
Sbjct: 489 M-QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGY---FSDLHVACALVDMYAK 544

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCL--YSNMDIGILAADHIFHLAPNQSGYYV 506
            G +  A  L   +P + +   W  ++A   +  + N  I       I  + P++S +  
Sbjct: 545 CGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSA 603

Query: 507 LLS 509
           +L+
Sbjct: 604 ILN 606


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 194/550 (35%), Positives = 306/550 (55%), Gaps = 45/550 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFFNVLIRSYV 106
           K++H+ ++IN  L+S  SI   L+  Y  C QM     +F + T++ NV  FN +I  ++
Sbjct: 57  KEIHSYMLINGFLNSPLSI-TSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFI 115

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
            N    +    Y+ M   G  PD +T+PC +KAC     +L   +IH  + K GL+ ++F
Sbjct: 116 TNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACL---DVLEIKKIHGLLFKFGLELDVF 172

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
            G+ LV  Y K G ++ A+    ++P +DVV WN+MV GYAQ G+F+  L+  R M    
Sbjct: 173 IGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDES 232

Query: 227 IKPDADTMASLLP---------------------------SVTNTSPENVLSVK------ 253
           + P   T+  +L                            +V+N+  +     K      
Sbjct: 233 VVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDAL 292

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           E+F  +  K++ SWN +++V+         + L  +M   GI+P+ ++V +VLPAC  L+
Sbjct: 293 EIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLA 352

Query: 314 ALLLGRKIHRYV------ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           AL+ GR+IH Y+      +  K   ++ L+NA++DMYAKCGS+ +A  VF++M  +DV S
Sbjct: 353 ALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVAS 412

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W  MI  YGM G G +A+ +FS+M    L PD + FV VLSACSHAG + +GR +   M 
Sbjct: 413 WNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMK 472

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
            +Y + P IEH+ C++D+LGRAG+++EAY+L   MP+E N  +W +L+AAC L+ +  + 
Sbjct: 473 SKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLA 532

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
            +AA  +F L P   G YVL+SN+Y   GR+ +V  VR  M  + ++K PG S +E+ + 
Sbjct: 533 EVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNG 592

Query: 547 VQIIALPLRS 556
           V +     R+
Sbjct: 593 VHVFVSADRA 602



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 174/383 (45%), Gaps = 49/383 (12%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC D+L+       +KK+H  ++    L  +  IG  L+  Y   G M   +  F+E+  
Sbjct: 148 ACLDVLE-------IKKIHG-LLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPI 199

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           ++VV +N ++  Y     +   L  ++ M+     P  +T   VL   +    L  G  I
Sbjct: 200 RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRII 259

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H   +K+G D  +   N L+ MYGKC C+++A  +   M  KD+ +WNS+V+ + Q G  
Sbjct: 260 HGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDH 319

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSP-----------------------ENV 249
           D  L +   M    I+PD  T+ ++LP+ ++ +                        ++V
Sbjct: 320 DGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDV 379

Query: 250 L---SVKEM-------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
           L   +V +M             F ++ NK++ SWN+MI  Y  +    EA++++ +M   
Sbjct: 380 LLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEV 439

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTE 352
            ++P+ ++   VL AC     +  GR     ++ K  + P +     ++DM  + G L E
Sbjct: 440 QLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDE 499

Query: 353 ARTVFDQMRCQ-DVVSWTSMISA 374
           A  +   M  + + V W ++++A
Sbjct: 500 AYELALTMPIEANPVVWRALLAA 522



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 93/415 (22%), Positives = 183/415 (44%), Gaps = 55/415 (13%)

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCV--LKACSGSNSLLVG 149
           NK   FF +LI+    + L+++   +  + ++  F        C+  L+A +   +L  G
Sbjct: 2   NKRTCFFGILIK---KSPLFFNFSSI--STAIQSFQQPYNLTTCIASLQASAHHKNLSKG 56

Query: 150 LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD--VVTWNSMVAGYA 207
            +IH  ++  G   +  +   L+ MY KC  +  A  + +D P+ +  V  +N++++G+ 
Sbjct: 57  KEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSD-PTHEINVFAFNAIISGFI 115

Query: 208 QNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM------------ 255
            NG  +E  +  ++M +  + PD  T    + +       +VL +K++            
Sbjct: 116 TNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACL-----DVLEIKKIHGLLFKFGLELD 170

Query: 256 -----------------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
                                  F +L  +++V WN M+  YA        ++ + +M  
Sbjct: 171 VFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMND 230

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
             + P+  +V  VL     +  L  GR IH +  +      + + N+L+DMY KC  + +
Sbjct: 231 ESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIED 290

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           A  +F+ MR +D+ SW S++S +   G     + L  +ML +G+ PD +   +VL ACSH
Sbjct: 291 ALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSH 350

Query: 413 AGLLEEGRYYFKIMT-----EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
              L  GR     M      +  K +  +     ++D+  + G + +A+ + ++M
Sbjct: 351 LAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERM 405


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 183/515 (35%), Positives = 298/515 (57%), Gaps = 44/515 (8%)

Query: 86  VFDEITNKNVVF-FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
           +F++  +K  VF +N +I     +    +AL  + +M      P+  T+PC +K+CS   
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
            L  G Q H   +  G + +LF  + LV MY KCG L++AR + +++  +++V+W SM+ 
Sbjct: 167 DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 226

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDAD--------TMASLLPSVTNTSPENVLS----- 251
           GY QN     AL + +E        + D         M S+L + +  S +++       
Sbjct: 227 GYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGF 286

Query: 252 ----------------------------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
                                        + +F  +  ++++SWN +IAVYA N M  E+
Sbjct: 287 LIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTES 346

Query: 284 VDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           ++++ +M   G I  NA+++++VL AC    +  LG+ IH  V +  L+ N+ +  +++D
Sbjct: 347 MEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIID 406

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MY KCG +  AR  FD+MR ++V SW++M++ YGM G   +A+ +F +M M+G+ P+ I 
Sbjct: 407 MYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYIT 466

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           FVSVL+ACSHAGLLEEG ++FK M+ ++ + P +EH+ C+VDLLGRAG ++EA+DLIK M
Sbjct: 467 FVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGM 526

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
            + P+  +WG+L+ AC ++ N+D+G ++A  +F L P   GYYVLLSNIYA AGRW DV+
Sbjct: 527 KLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVE 586

Query: 523 RVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           R+R  M + G+ K PG S V++  +V +  +  R 
Sbjct: 587 RMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDRE 621



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 180/379 (47%), Gaps = 45/379 (11%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+ + ++ H Q +I      +  +   L+  Y  CG++ D R +FDEI+++N+V +  +I
Sbjct: 167 DLHSGRQAHQQALIFG-FEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 225

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC--------VLKACSGSNSLLVGLQIHC 154
             YV N   + AL ++K   V     +     C        VL ACS  +   +   +H 
Sbjct: 226 TGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHG 285

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            ++K G + +L   N L+  Y KCG L  +RRV + M  +DV++WNS++A YAQNG   E
Sbjct: 286 FLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTE 345

Query: 215 ALDVCREM-ESLRIKPDADTMASLLPSVTNTSPE-------------------------- 247
           ++++   M +   I  +A T++++L +  ++  +                          
Sbjct: 346 SMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSII 405

Query: 248 -------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                   V   ++ F ++  KN+ SW+ M+A Y  +    EA++++ +M + G++PN I
Sbjct: 406 DMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYI 465

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           +  SVL AC     L  G    + +  +  ++P +     +VD+  + G L EA  +   
Sbjct: 466 TFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKG 525

Query: 360 MRCQ-DVVSWTSMISAYGM 377
           M+ + D V W +++ A  M
Sbjct: 526 MKLRPDFVVWGALLGACRM 544


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 187/509 (36%), Positives = 281/509 (55%), Gaps = 46/509 (9%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGAC-----GQMVDTRHVFDEITN 92
           LD    +  LK+ H+QII       N ++G    R    C     G +     VFD+I +
Sbjct: 27  LDSCSTMAELKQYHSQIIRLGLSADNDAMG----RVIKFCAISKSGDLNYALEVFDKIPH 82

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
            +   +N + R Y+   L  + + +Y  M      P+ +TYP +++AC    ++  G QI
Sbjct: 83  PDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQI 142

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  V+K G   + F+ N L+ MY     L++ARRV ++MP +DVV+W S++ GY+Q G  
Sbjct: 143 HAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFV 202

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIA 272
           D+A                                     +E+F  +  +N VSWN MIA
Sbjct: 203 DKA-------------------------------------REVFELMPERNSVSWNAMIA 225

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y  ++   EA  L+ +M +  +  +    AS+L AC  L AL  G+ IH Y+E+  ++ 
Sbjct: 226 AYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIEL 285

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           + +L   ++DMY KCG L +A  VF+++  + + SW  MI    M G+G  A+ LF +M 
Sbjct: 286 DSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEME 345

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
              + PD I FV+VLSAC+H+GL+EEG++YF+ MTE   L P +EHF C+VDLLGRAG +
Sbjct: 346 REMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLL 405

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
           EEA  LI +MP+ P+  + G+LV AC ++ N ++G      +  L P+ SG YVLL+N+Y
Sbjct: 406 EEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLY 465

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           A AGRW DV +VRK MN +G+KK PG S+
Sbjct: 466 ASAGRWEDVAKVRKLMNDRGVKKAPGFSM 494



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 165/346 (47%), Gaps = 12/346 (3%)

Query: 15  KPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTY 74
           K + A VL   +    G + N+++  Y + ++L++  A+ + +     +      L+  Y
Sbjct: 140 KQIHAHVLKFGFGA-DGFSLNNLIHMYVNFQSLEQ--ARRVFDNMPQRDVVSWTSLITGY 196

Query: 75  GACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYP 134
              G +   R VF+ +  +N V +N +I +YV +   ++A  ++  M +     D +   
Sbjct: 197 SQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAA 256

Query: 135 CVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK 194
            +L AC+G  +L  G  IH  + K G++ +      ++ MY KCGCL++A  V N++P K
Sbjct: 257 SMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQK 316

Query: 195 DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS--PENVLSV 252
            + +WN M+ G A +G+ + A+++ +EME   + PD  T  ++L +  ++    E     
Sbjct: 317 GISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYF 376

Query: 253 KEMFLKLDNK-NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
           + M   L  K  +  +  M+ +     +  EA  L  +M V+   P+A  + +++ AC  
Sbjct: 377 QYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVN---PDAGVLGALVGACRI 433

Query: 312 LSALLLGRKIHRYVERKKLQP-NLRLENALVDMYAKCGSLTEARTV 356
                LG +I + V   +L+P N      L ++YA  G   +   V
Sbjct: 434 HGNTELGEQIGKKV--IELEPHNSGRYVLLANLYASAGRWEDVAKV 477


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 197/566 (34%), Positives = 307/566 (54%), Gaps = 71/566 (12%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH---VFDEITNK 93
           ++D+   +K LK +HAQII    LH   +  L L +   +  Q+ D R+   +FD+I   
Sbjct: 42  LIDQCISLKQLKHVHAQII----LHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQIPQP 97

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           N   FN LI+ Y N+     +L +Y+ M   G  P+ +T P VLKAC+  +   +G+ +H
Sbjct: 98  NKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVH 157

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
               K+G+  +    N ++ +Y  CG +  ARRV +D+  + +V+WNSM+ GY++ GR +
Sbjct: 158 AQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSE 217

Query: 214 EALDVCREMESLRIKPDADTMASLLPS---------------------------VTNTSP 246
           EA+ + REM+ + ++PD  T+  LL                             VTN   
Sbjct: 218 EAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALM 277

Query: 247 E------NVLSVKEMFLKLDNKNLVSWNVMIAVYAN-----------NSMP--------- 280
           +      N+   K +F ++ +K++VSW  MI  YAN           N MP         
Sbjct: 278 DMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNS 337

Query: 281 -----------AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
                      AEAVDL+ +M   G+  N  ++ ++L +C  +  L LG++ H Y+    
Sbjct: 338 IIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNN 397

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           +  +  L NA++DMYAKCG+L  A  VF  M  ++ VSW  +I A  + G G +A+ +F 
Sbjct: 398 ITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFE 457

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           KM  SG+CPD I F  +LSACSH+GL++ G++YF+IM   + + P +EH+AC+VDLLGR 
Sbjct: 458 KMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRR 517

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G + EA  LIK+MP++P+  +W +L+ AC  Y N+ IG      +  L    SG YVLLS
Sbjct: 518 GLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLS 577

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKK 535
           N+Y+++ RW D+K + K ++  GIKK
Sbjct: 578 NMYSESQRWDDMKNIWKILDQNGIKK 603


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 184/513 (35%), Positives = 286/513 (55%), Gaps = 43/513 (8%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           ++DK   I  L ++HA ++    L  +P +  KL R+Y + G++  +  +F    N +V 
Sbjct: 36  LIDKSKTISHLLQIHA-VLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVF 94

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
           F+  +I  +    L+  AL+ Y  M   G +P+ +T+  +LK C     +  G  +H   
Sbjct: 95  FWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQA 150

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           VK+G D +L+   GL+ +Y + G +  A+++ + MP K +V+  +M+  YA++G  D A 
Sbjct: 151 VKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAA- 209

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                               + +F  ++ ++ V WNVMI  Y  
Sbjct: 210 ------------------------------------RVLFDGMEERDGVCWNVMIDGYTQ 233

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N MP EA+ L+ +M     +PN ++V SVL ACG L AL  GR +H Y+E   +Q N+ +
Sbjct: 234 NGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHV 293

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
             ALVDMY+KCGSL +AR VFD++  +DVV+W SMI  Y M G   +A+ LF  M   GL
Sbjct: 294 GTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGL 353

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P +I F+ +LSAC H+G + EG   F  M ++Y + P+IEH+ C+V+LLGRAG VE+AY
Sbjct: 354 HPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAY 413

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           +L+K M +EP+  +WG+L+ AC L+  + +G    + +       SG Y+LLSNIYA  G
Sbjct: 414 ELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVG 473

Query: 517 RWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
            W  V R+R  M   G+KK PG +S+E+N++V 
Sbjct: 474 NWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVH 506


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/551 (34%), Positives = 295/551 (53%), Gaps = 45/551 (8%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +  L+K+ AQII       N  +   ++ ++    QM   RH+FD   +  V  +N + R
Sbjct: 80  VALLQKVQAQII-THGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISR 138

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            Y +N  Y + + ++  M      P+C+T+P VLK+C+   + + G +IHC V+K GL+ 
Sbjct: 139 GYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEG 198

Query: 164 NLFNGNGLVAMYGK-------------------------------CGCLKEARRVLNDMP 192
           N F    L+ +Y                                 C  +  ARR+ +  P
Sbjct: 199 NQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAP 258

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA--SLLPSVTNTSPENVL 250
            +DVV WN MV+GY + G    A  +   M      P  DTM+  ++L    N    +V 
Sbjct: 259 ERDVVLWNIMVSGYIEIGDMKAARKLFDTM------PYRDTMSWNTMLNGYANNG--DVE 310

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPAC 309
           + +++F ++  +N+ SWN +I  YA+N    E +  + +M + G + PN  ++ +VL AC
Sbjct: 311 ACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSAC 370

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L AL LG+ +H Y      + ++ + NAL+DMY+KCG +  A  VF+ M  +D+++W 
Sbjct: 371 ARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWN 430

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           SMI      G G DA+ LF +M ++G  PD I F+ VL +C+H GL+EEG  YF  M  +
Sbjct: 431 SMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNE 490

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y + P+IEH+ C+VDL GRAG ++ A + +K+MPME +  IW +L+ AC +Y N+D+  L
Sbjct: 491 YSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAEL 550

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ-V 547
           A   +  L P     YVLLSNIY   GRW DV R++  M   G KK+PG S +E+ND  V
Sbjct: 551 ALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVV 610

Query: 548 QIIALPLRSSK 558
           +  +L  R S+
Sbjct: 611 EFYSLDERHSQ 621


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 197/536 (36%), Positives = 303/536 (56%), Gaps = 35/536 (6%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           L K+    +I   L  +  +G  L+  YG C        +F+E+  K+V  +N +I  Y 
Sbjct: 124 LGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYY 183

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
            +  + DAL  +  M   GF+P+  T    + +C+    L  G++IH  ++  G   + F
Sbjct: 184 QSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSF 243

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
             + LV MYGKCG L+ A  +   MP K VV WNSM++GY   G     + + + M +  
Sbjct: 244 ISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEG 303

Query: 227 IKPDADTMASLL-------------------------PSV-TNTSPENV------LSVKE 254
           +KP   T++SL+                         P V  N+S  ++      + + E
Sbjct: 304 VKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAE 363

Query: 255 MFLKLDNKN-LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
              KL  K+ +VSWNVMI+ Y       EA+ L+ +M    +E +AI+  SVL AC  L+
Sbjct: 364 KIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLA 423

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           AL  G++IH  +  KKL  N  +  AL+DMYAKCG++ EA +VF  +  +D+VSWTSMI+
Sbjct: 424 ALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMIT 483

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
           AYG  G  Y A+ LF++ML S + PD +AF+++LSAC HAGL++EG YYF  M   Y ++
Sbjct: 484 AYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGII 543

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMP-MEPNERIWGSLVAACCLYSNMDIGILAAD 492
           PR+EH++CL+DLLGRAG++ EAY++++Q P +  +  +  +L +AC L+ N+D+G   A 
Sbjct: 544 PRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIAR 603

Query: 493 HIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
            +    P+ S  Y+LLSN+YA A +W +V+ VR  M   G+KK PG S +E+N ++
Sbjct: 604 TLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKI 659



 Score =  228 bits (580), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 140/470 (29%), Positives = 245/470 (52%), Gaps = 39/470 (8%)

Query: 45  KTLK--KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFFNVL 101
           K+LK  KL  Q ++   L ++  +   L+  Y +C      + VFD + N   +  +N L
Sbjct: 17  KSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPCEISLWNGL 76

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGF-DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           +  Y  NY+Y +AL +++ +  + +  PD YTYP V KAC G +  ++G  IH  ++K G
Sbjct: 77  MAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTG 136

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
           L  ++  G+ LV MYGKC   ++A  + N+MP KDV  WN++++ Y Q+G F +AL+   
Sbjct: 137 LMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFG 196

Query: 221 EMESLRIKPDADTMAS--------------------------LLPSVTNTSPENVLS--- 251
            M     +P++ T+ +                          LL S  +++  ++     
Sbjct: 197 LMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCG 256

Query: 252 ----VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                 E+F ++  K +V+WN MI+ Y         + L+ +M   G++P   +++S++ 
Sbjct: 257 HLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIM 316

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
            C   + LL G+ +H Y  R ++QP++ + ++L+D+Y KCG +  A  +F  +    VVS
Sbjct: 317 VCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVS 376

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W  MIS Y   G+ ++A+ LFS+M  S +  D+I F SVL+ACS    LE+G+    ++ 
Sbjct: 377 WNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLII 436

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           E+ KL         L+D+  + G V+EA+ + K +P + +   W S++ A
Sbjct: 437 EK-KLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KRDLVSWTSMITA 484



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 184/403 (45%), Gaps = 45/403 (11%)

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK- 194
           +L+AC  S SL  G  IH  VV +GL  ++F    L+  Y  C     A+ V ++M +  
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPC 68

Query: 195 DVVTWNSMVAGYAQNGRFDEALDVCREMESL-RIKPDADTMASLLPS------------- 240
           ++  WN ++AGY +N  + EAL++  ++     +KPD+ T  S+  +             
Sbjct: 69  EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMI 128

Query: 241 -------------VTNTSPENVLSVKEMFLK-------LDNKNLVSWNVMIAVYANNSMP 280
                        V  +S   +      F K       +  K++  WN +I+ Y  +   
Sbjct: 129 HTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNF 188

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            +A++ +  M   G EPN++++ + + +C  L  L  G +IH  +       +  + +AL
Sbjct: 189 KDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSAL 248

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           VDMY KCG L  A  +F+QM  + VV+W SMIS YG+ G     + LF +M   G+ P  
Sbjct: 249 VDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTL 308

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
               S++  CS +  L EG++     T + ++ P +   + L+DL  + GKVE A  + K
Sbjct: 309 TTLSSLIMVCSRSARLLEGKFVHG-YTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFK 367

Query: 461 QMP---------MEPNERIWGSLVAACCLYSNMDIGILAADHI 494
            +P         M       G L  A  L+S M    + +D I
Sbjct: 368 LIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAI 410


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 193/544 (35%), Positives = 304/544 (55%), Gaps = 45/544 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFFNVLIRSYV 106
           K++H+ ++IN  L+S  SI   L+  Y  C QM     +F + T++ NV  FN +I  ++
Sbjct: 57  KEIHSYMLINGFLNSPLSI-TSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFI 115

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
            N    +    Y+ M   G  PD +T+PC +KAC     +L   +IH  + K GL+ ++F
Sbjct: 116 TNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACL---DVLEIKKIHGLLFKFGLELDVF 172

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
            G+ LV  Y K G ++ A+    ++P +DVV WN+MV GYAQ G+F+  L+  R M    
Sbjct: 173 IGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDES 232

Query: 227 IKPDADTMASLLP---------------------------SVTNTSPENVLSVK------ 253
           + P   T+  +L                            +V+N+  +     K      
Sbjct: 233 VVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDAL 292

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           E+F  +  K++ SWN +++V+         + L  +M   GI+P+ ++V +VLPAC  L+
Sbjct: 293 EIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLA 352

Query: 314 ALLLGRKIHRYV------ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           AL+ GR+IH Y+      +  K   ++ L+NA++DMYAKCGS+ +A  VF++M  +DV S
Sbjct: 353 ALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVAS 412

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W  MI  YGM G G +A+ +FS+M    L PD + FV VLSACSHAG + +GR +   M 
Sbjct: 413 WNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMK 472

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
            +Y + P IEH+ C++D+LGRAG+++EAY+L   MP+E N  +W +L+AAC L+ +  + 
Sbjct: 473 SKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLA 532

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
            +AA  +F L P   G YVL+SN+Y   GR+ +V  VR  M  + ++K PG S +E+ + 
Sbjct: 533 EVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNG 592

Query: 547 VQII 550
           V + 
Sbjct: 593 VHVF 596



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 174/383 (45%), Gaps = 49/383 (12%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC D+L+       +KK+H  ++    L  +  IG  L+  Y   G M   +  F+E+  
Sbjct: 148 ACLDVLE-------IKKIHG-LLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPI 199

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           ++VV +N ++  Y     +   L  ++ M+     P  +T   VL   +    L  G  I
Sbjct: 200 RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRII 259

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H   +K+G D  +   N L+ MYGKC C+++A  +   M  KD+ +WNS+V+ + Q G  
Sbjct: 260 HGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDH 319

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSP-----------------------ENV 249
           D  L +   M    I+PD  T+ ++LP+ ++ +                        ++V
Sbjct: 320 DGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDV 379

Query: 250 L---SVKEM-------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
           L   +V +M             F ++ NK++ SWN+MI  Y  +    EA++++ +M   
Sbjct: 380 LLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEV 439

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTE 352
            ++P+ ++   VL AC     +  GR     ++ K  + P +     ++DM  + G L E
Sbjct: 440 QLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDE 499

Query: 353 ARTVFDQMRCQ-DVVSWTSMISA 374
           A  +   M  + + V W ++++A
Sbjct: 500 AYELALTMPIEANPVVWRALLAA 522



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 164/368 (44%), Gaps = 50/368 (13%)

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCV--LKACSGSNSLLVG 149
           NK   FF +LI+    + L+++   +  + ++  F        C+  L+A +   +L  G
Sbjct: 2   NKRTCFFGILIK---KSPLFFNFSSI--STAIQSFQQPYNLTTCIASLQASAHHKNLSKG 56

Query: 150 LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD--VVTWNSMVAGYA 207
            +IH  ++  G   +  +   L+ MY KC  +  A  + +D P+ +  V  +N++++G+ 
Sbjct: 57  KEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSD-PTHEINVFAFNAIISGFI 115

Query: 208 QNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM------------ 255
            NG  +E  +  ++M +  + PD  T    + +       +VL +K++            
Sbjct: 116 TNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACL-----DVLEIKKIHGLLFKFGLELD 170

Query: 256 -----------------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
                                  F +L  +++V WN M+  YA        ++ + +M  
Sbjct: 171 VFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMND 230

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
             + P+  +V  VL     +  L  GR IH +  +      + + N+L+DMY KC  + +
Sbjct: 231 ESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIED 290

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           A  +F+ MR +D+ SW S++S +   G     + L  +ML +G+ PD +   +VL ACSH
Sbjct: 291 ALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSH 350

Query: 413 AGLLEEGR 420
              L  GR
Sbjct: 351 LAALMHGR 358



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 162/375 (43%), Gaps = 37/375 (9%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S  ++   L+  YG C  + D   +F+ +  K++  +N ++  +     +   L +   M
Sbjct: 270 SGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRM 329

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN------LFNGNGLVAMY 175
              G  PD  T   VL ACS   +L+ G +IH  ++  GL  +      +   N ++ MY
Sbjct: 330 LGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMY 389

Query: 176 GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA 235
            KCG +++A  V   M +KDV +WN M+ GY  +G  +EAL++   M  +++KPD  T  
Sbjct: 390 AKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFV 449

Query: 236 SLLPSVTNTSPENVLSVKEMFLKLDNKNLVS-----WNVMIAVYANNSMPAEAVDLYLQM 290
            +L + ++     V   +   +++ +K  V+     +  +I +        EA +L L M
Sbjct: 450 GVLSACSHAG--FVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTM 507

Query: 291 EVHGIEPNAISVASVLPACG-DLSALLLGRKIHRYVERKKLQPNLRLENALV-DMYAKCG 348
               IE N +   ++L AC     A+L      R  E   L+P       L+ ++Y   G
Sbjct: 508 P---IEANPVVWRALLAACRLHKHAVLAEVAAQRVFE---LEPEHCGSYVLMSNVYGAVG 561

Query: 349 SLTEARTVFDQMRCQDV-----VSWTSM-------ISAYGMSGQGYDAVA----LFSKML 392
              E   V   MR Q+V      SW  +       +SA     + +   A    L +++ 
Sbjct: 562 RYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAHSIYAGLNSLTARLR 621

Query: 393 MSGLCPDSIAFVSVL 407
             G  PD   F S L
Sbjct: 622 EHGYVPDVFCFFSPL 636


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 200/595 (33%), Positives = 318/595 (53%), Gaps = 73/595 (12%)

Query: 26  YTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMR--TYGACGQMVDT 83
           Y +L      ++L+K  +I T K++H+ +II   L++   +  KL+        G +   
Sbjct: 23  YKILEQHPYLNLLEKCKNINTFKQIHS-LIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYA 81

Query: 84  RHVFDEITNK---NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC 140
             +F+E       NV  +N LIR Y  +     +LH++  M  +G  P+ +T+P + K+C
Sbjct: 82  LSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSC 141

Query: 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG--------------------- 179
           + + +   G Q+H   +K+ L +N      ++ MY   G                     
Sbjct: 142 TKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFT 201

Query: 180 ----------CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
                     CL +ARR+ +++P KDVV+WN+M++GY Q+GRF+EA+    EM+   + P
Sbjct: 202 ALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLP 261

Query: 230 DADTMASLLPSVTNTSP----------------------ENVLS-----------VKEMF 256
           +  TM  +L +  +T                         N L             +E+F
Sbjct: 262 NKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELF 321

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
             ++ K+++SWN MI  Y+  S+  EA+ L+  M    ++PN ++   +L AC  L AL 
Sbjct: 322 DGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALD 381

Query: 317 LGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
           LG+ +H Y+++  +   N  L  +L+DMYAKCG +  A  VF  M  +++ SW +M+S +
Sbjct: 382 LGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGF 441

Query: 376 GMSGQGYDAVALFSKMLMSGLC-PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
            M G    A+ALFS+M+  GL  PD I FV VLSAC+ AGL++ G  YF+ M + Y + P
Sbjct: 442 AMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISP 501

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
           +++H+ C++DLL RA K EEA  L+K M MEP+  IWGSL++AC  +  ++ G   A+ +
Sbjct: 502 KLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERL 561

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           F L P  +G +VLLSNIYA AGRW DV R+R  +N KG+KK+PG  S+E++  V 
Sbjct: 562 FQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVH 616


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 180/500 (36%), Positives = 281/500 (56%), Gaps = 38/500 (7%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
            H++P I   L+  Y ACG+++D R +FD++++++VV +N++I  Y  N  Y   L +Y+
Sbjct: 147 FHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYE 206

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M   G +PD      VL AC+ + +L  G  IH  +   G          LV MY  CG
Sbjct: 207 EMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCG 266

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
            +  AR V + +PSK +V   +M++GYA+ G   +A                        
Sbjct: 267 AMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDA------------------------ 302

Query: 240 SVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                        + +F ++  K+LV W+ MI+ YA +  P EA+ L+ +M+   I P+ 
Sbjct: 303 -------------RFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQ 349

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           I++ SV+ AC ++ AL+  + IH Y ++      L + NAL+DMYAKCG+L +AR VF+ 
Sbjct: 350 ITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFEN 409

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
           M  ++V+SW+SMI+A+ M G    A+ALF +M    + P+ + F+ VL ACSHAGL+EEG
Sbjct: 410 MPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEG 469

Query: 420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
           + +F  M  ++++ P+ EH+ C+VDL  RA  + +A +LI+ MP  PN  IWGSL++AC 
Sbjct: 470 QKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQ 529

Query: 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA 539
            +  +++G  AA  +  L P+  G  V+LSNIYAK  RW DV  VRK M  KG+ K    
Sbjct: 530 NHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKAC 589

Query: 540 S-VEMNDQVQIIALPLRSSK 558
           S +E+N++V +  +  R  K
Sbjct: 590 SRIEVNNEVHVFMMADRYHK 609



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 4/221 (1%)

Query: 245 SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
           SP  +     +F  + N      N ++  ++    P   + LYL +  +G   +  S   
Sbjct: 61  SPSALDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPP 120

Query: 305 VLPACGDLSALLLGRKIHRYVERKKL-QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           +L A   LSAL LG +IH    +      +  +++AL+ MYA CG + +AR +FD+M  +
Sbjct: 121 LLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHR 180

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           DVV+W  MI  Y  +      + L+ +M  SG  PD+I   +VLSAC+HAG L  G+   
Sbjct: 181 DVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIH 240

Query: 424 KIMTEQ-YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           + + +  +++   I+    LV++    G +  A ++  Q+P
Sbjct: 241 QFIKDNGFRVGSHIQ--TSLVNMYANCGAMHLAREVYDQLP 279


>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 709

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 185/498 (37%), Positives = 285/498 (57%), Gaps = 8/498 (1%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           +H + +++    SN  +   L+  Y  CG++   R VF+ +  ++VV +N +I  +  N 
Sbjct: 206 IHGRALVSG-FSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNG 264

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
              +AL V+ +M     +PD  T    L +C     L +G+++H  V K  L   +   N
Sbjct: 265 RPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQEKIEVRN 324

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            LV MY +CG + EA  V  +   KDV+TW SM+ GY  NG    AL +C  M+   + P
Sbjct: 325 ALVDMYSRCGGIDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVP 384

Query: 230 DADTMASLLPSVTNT----SPENVLSVK-EMFLKLDNKNLVSWNVMIAVYANNSMPAEAV 284
           +A T+ASLL +  +     +  N +S   ++F K   K  V WN +++   +N +  EAV
Sbjct: 385 NAVTLASLLSACASLCYMYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGLIHNELAREAV 444

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMY 344
            L+  M +  +E N  +  SV+PA   L+ L     +H Y+ R      + +   L+DMY
Sbjct: 445 GLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMY 504

Query: 345 AKCGSLTEARTVFDQM--RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           +KCGSL  A  +FD++  + +D++ W+ +I+ YGM G G  AV LF++M+ SG+ P+ I 
Sbjct: 505 SKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEIT 564

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           F SVL ACSH GL+++G   FK M E Y   P   H+ C+VDLLGRAG+++EAYDLIK M
Sbjct: 565 FTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSM 624

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
           P + N  IWG+L+ AC ++ N+++G +AA+ +F L P  +G Y+LL+NIYA  GRW D +
Sbjct: 625 PFQQNHSIWGALLGACLIHQNVELGEVAAERLFELEPESTGNYILLANIYAAVGRWKDAE 684

Query: 523 RVRKFMNSKGIKKMPGAS 540
            VR  M+  G++K P  S
Sbjct: 685 NVRHIMSKIGLRKTPAQS 702



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 142/517 (27%), Positives = 246/517 (47%), Gaps = 71/517 (13%)

Query: 34  CNDILDKYPDIKTLKK---LHAQIIINQHLHSNPSIGL--KLMRTYGACGQMVDTRHVFD 88
           C+ +L  Y   ++L K   LH   I +  LHS   I L   L  +Y  CG +   R +FD
Sbjct: 82  CDSLLRHYAATRSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFD 141

Query: 89  EITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDPDCYTYPCVLKACSGSNSLL 147
           ++++ ++  +N +I+ YV+   ++DAL V+ +M   G F PD YT+P V+KACS  + L 
Sbjct: 142 DLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSMLN 201

Query: 148 VGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA 207
           VG+ IH   +  G   N+F  N L+AMY  CG +  AR+V N M  + VV+WN+M++G+ 
Sbjct: 202 VGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWF 261

Query: 208 QNGRFDEALDVCREMESLRIKPDADTMASLLPS----------------VTNTSPENVLS 251
           QNGR +EAL V   M   R++PD+ T+ S LPS                V     +  + 
Sbjct: 262 QNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQEKIE 321

Query: 252 VKE-----------------MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
           V+                  +F +   K++++W  MI  Y  N     A+ L   M++ G
Sbjct: 322 VRNALVDMYSRCGGIDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDG 381

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
           + PNA+++AS+L AC                             +L  MYAKC +++ + 
Sbjct: 382 VVPNAVTLASLLSACA----------------------------SLCYMYAKCNAVSYSF 413

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            VF +   +  V W +++S    +    +AV LF  ML+  +  +   F SV+ A +   
Sbjct: 414 QVFAKTSKKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILA 473

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP-MEPNERIWGS 473
            L++       +      + +I     L+D+  + G ++ A+ +  ++P  E +  +W  
Sbjct: 474 DLKQVMNLHSYLVRS-GFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSV 532

Query: 474 LVAACCLYSNMDIGILAADHIFH--LAPNQSGYYVLL 508
           L+A   ++ + +  +L  + + H  + PN+  +  +L
Sbjct: 533 LIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVL 569


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 189/515 (36%), Positives = 300/515 (58%), Gaps = 49/515 (9%)

Query: 84  RHVFDEITNKNVVF-FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
           R +F +  +K  V+ +N +I  +  +     AL+ + +M      P+  T+PC +K+CS 
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
              L  G QIH      G   ++F  + L+ MY KCG L +AR++ +++P ++VV+W SM
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSM 158

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASL--------------------LPSVT 242
           ++GY QN R  EA+ + +E   L  + D D +  +                    + SVT
Sbjct: 159 ISGYVQNERAREAVFLFKEF-LLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVT 217

Query: 243 N--------TSPENVLSV-----------------KEMFLKLDNKNLVSWNVMIAVYANN 277
                       E  L+V                 +++F  ++  ++ SWN +IAVYA N
Sbjct: 218 ECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQN 277

Query: 278 SMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
            +  EA  L+  M   G +  NA+++++VL AC    AL +G+ IH  V + +L+ NL +
Sbjct: 278 GLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVV 337

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
             ++VDMY KCG +  AR  FD+++ ++V SWT M++ YGM G G +A+ +F +M+  G+
Sbjct: 338 GTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGI 397

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P+ I FVSVL+ACSHAGLL+EG ++F  M  ++ + P IEH++C+VDLLGRAG ++EAY
Sbjct: 398 KPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAY 457

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
            LI++M ++P+  +WGSL+ AC ++ N+++G ++A  +F L P+  GYYVLLSNIYA AG
Sbjct: 458 GLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAG 517

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           RW DV+R+R  M + G+ K PG S VE   +V + 
Sbjct: 518 RWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVF 552



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 179/381 (46%), Gaps = 52/381 (13%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   K++H Q  +  +  S+  +   L+  Y  CG + D R +FDEI  +NVV +  +I
Sbjct: 101 DLCAGKQIHQQAFVFGY-GSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMI 159

Query: 103 RSYVNN-------YLYYDALHV----YKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
             YV N       +L+ + L V    Y  +   G   D     CV+ AC+      V   
Sbjct: 160 SGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTEC 219

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H   VK G +  L  GN L+  Y KCG +  +R+V + M   DV +WNS++A YAQNG 
Sbjct: 220 VHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGL 279

Query: 212 FDEALDVCREM-ESLRIKPDADTMASLLPSVTNTSP----------------ENVLSV-- 252
             EA  +  +M +   ++ +A T++++L +  ++                  E+ L V  
Sbjct: 280 SVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGT 339

Query: 253 ---------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297
                          ++ F +L  KN+ SW VM+A Y  +    EA+ ++ +M   GI+P
Sbjct: 340 SIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKP 399

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERK---KLQPNLRLENALVDMYAKCGSLTEAR 354
           N I+  SVL AC    A LL    H + + K    ++P +   + +VD+  + G L EA 
Sbjct: 400 NYITFVSVLAACS--HAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAY 457

Query: 355 TVFDQMRCQ-DVVSWTSMISA 374
            +  +M+ + D + W S++ A
Sbjct: 458 GLIQEMKVKPDFIVWGSLLGA 478



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 139/287 (48%), Gaps = 17/287 (5%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +K++ +    + + +      ++G  LM  Y  CG++  +R VFD +   +V  +N LI 
Sbjct: 213 VKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIA 272

Query: 104 SYVNNYLYYDALHVYKNMSVHG-FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            Y  N L  +A  ++ +M   G    +  T   VL AC+ S +L +G  IH  VVK+ L+
Sbjct: 273 VYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELE 332

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            NL  G  +V MY KCG ++ AR+  + +  K+V +W  MVAGY  +G   EA+ V  EM
Sbjct: 333 DNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEM 392

Query: 223 ESLRIKPDADTMASLLPSVTNTS--PENVLSVKEMFLKLD-NKNLVSWNVMIAVYANNSM 279
               IKP+  T  S+L + ++     E      +M  + D    +  ++ M+ +      
Sbjct: 393 IRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGY 452

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
             EA  L  +M+V   +P+ I   S+L AC          +IH+ VE
Sbjct: 453 LKEAYGLIQEMKV---KPDFIVWGSLLGAC----------RIHKNVE 486



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 95/173 (54%), Gaps = 12/173 (6%)

Query: 251 SVKEMFLK-LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
           +++ MF K +D  ++ SWN +IA +A +    +A+  +  M    + PN  +    + +C
Sbjct: 37  NLRSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSC 96

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L  L  G++IH+         ++ + +AL+DMY+KCG L +AR +FD++  ++VVSWT
Sbjct: 97  SSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWT 156

Query: 370 SMISAYGMSGQGYDAVALFSKMLM-----------SGLCPDSIAFVSVLSACS 411
           SMIS Y  + +  +AV LF + L+            G+  DS+    V+SAC+
Sbjct: 157 SMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACA 209


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 184/542 (33%), Positives = 299/542 (55%), Gaps = 39/542 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++  +++H  +I N    SN      ++  Y  C Q+ D   +F+ +  +++V +N ++
Sbjct: 157 DLRRGREIHGMVITNG-FQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVV 215

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             Y  N     A+ V   M   G  PD  T   VL A +   +L +G  IH    + G +
Sbjct: 216 AGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFE 275

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA------- 215
           Y +     ++  Y KCG ++ AR V   M S++VV+WN+M+ GYAQNG  +EA       
Sbjct: 276 YMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKM 335

Query: 216 ---------------LDVC-------------REMESLRIKPDADTMASLLPSVTNTSPE 247
                          L  C             R ++  +I  D   M SL+   +     
Sbjct: 336 LDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRV 395

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
           ++ +   +F  L +K +V+WN MI  YA N    EA++L+ +M+ H I+P++ ++ SV+ 
Sbjct: 396 DIAA--SVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVIT 453

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           A  DLS     + IH    R  +  N+ +  AL+D +AKCG++  AR +FD M+ + V++
Sbjct: 454 ALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVIT 513

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W +MI  YG +G G +A+ LF++M    + P+ I F+SV++ACSH+GL+EEG YYF+ M 
Sbjct: 514 WNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMK 573

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
           E Y L P ++H+  +VDLLGRAG++++A+  I+ MP++P   + G+++ AC ++ N+++G
Sbjct: 574 ENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELG 633

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
              AD +F L P+  GY+VLL+N+YA A  W  V RVR  M  KGI+K PG S VE+ ++
Sbjct: 634 EKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNE 693

Query: 547 VQ 548
           V 
Sbjct: 694 VH 695



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 155/572 (27%), Positives = 267/572 (46%), Gaps = 87/572 (15%)

Query: 46  TLKKLHA--QIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +LK+LH    +II    ++      KL+  +     + +   VF+ + +K  V ++ +++
Sbjct: 56  SLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLK 115

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            Y  N    DA+  Y+ M      P  Y +  +L+    +  L  G +IH  V+  G   
Sbjct: 116 GYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQS 175

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           NLF    +V +Y KC  +++A ++   MP +D+V+WN++VAGYAQNG    A+ V  +M+
Sbjct: 176 NLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQ 235

Query: 224 SLRIKPDADTMASLLPSVTNTSP---------------------------------ENVL 250
               KPD+ T+ S+LP+V +                                     +V 
Sbjct: 236 EAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVR 295

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
           S + +F  + ++N+VSWN MI  YA N    EA   +L+M   G+EP  +S+   L AC 
Sbjct: 296 SARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACA 355

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           +L  L  GR +HR ++ KK+  ++ + N+L+ MY+KC  +  A +VF  ++ + VV+W +
Sbjct: 356 NLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNA 415

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC-------------------- 410
           MI  Y  +G   +A+ LF +M    + PDS   VSV++A                     
Sbjct: 416 MILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTL 475

Query: 411 -------------SHA--GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
                        +HA  G ++  R  F +M E++ +      +  ++D  G  G   EA
Sbjct: 476 MDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVIT-----WNAMIDGYGTNGHGREA 530

Query: 456 YDLIKQM---PMEPNERIWGSLVAACCLYSNMDIGILAADHI---FHLAPNQSGYYVLLS 509
            DL  +M    ++PNE  + S++AAC     ++ G+   + +   + L P    Y  ++ 
Sbjct: 531 LDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMV- 589

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           ++  +AGR  D     KF+    +K  PG +V
Sbjct: 590 DLLGRAGRLDD---AWKFIQDMPVK--PGITV 616



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 164/334 (49%), Gaps = 38/334 (11%)

Query: 131 YTYPC--VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           Y +P   +L+ C+    L    QI   ++K G          L++++ K   + EA RV 
Sbjct: 43  YRHPSAILLELCTSLKELH---QILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVF 99

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP--------- 239
             +  K  V +++M+ GYA+N    +A+     M    + P       LL          
Sbjct: 100 EPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLR 159

Query: 240 --------SVTNTSPENVLSVK----------------EMFLKLDNKNLVSWNVMIAVYA 275
                    +TN    N+ ++                 +MF ++  ++LVSWN ++A YA
Sbjct: 160 RGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYA 219

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            N     AV + LQM+  G +P++I++ SVLPA  DL AL +GR IH Y  R   +  + 
Sbjct: 220 QNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVN 279

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           +  A++D Y KCGS+  AR VF  M  ++VVSW +MI  Y  +G+  +A A F KML  G
Sbjct: 280 VATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEG 339

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           + P +++ +  L AC++ G LE GRY  +++ E+
Sbjct: 340 VEPTNVSMMGALHACANLGDLERGRYVHRLLDEK 373


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 174/486 (35%), Positives = 287/486 (59%), Gaps = 40/486 (8%)

Query: 70  LMRTYGACGQMVDTRHVF----DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           L+  +   G++ +T+ +F    D     N+V +N +I  +  +  Y DA+ +++NM + G
Sbjct: 146 LISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEG 205

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             PD  +   VL A    +  L+G+QIHC V+K GL  + F  + L+ MYGKC C  E  
Sbjct: 206 LKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMS 265

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            V N+M   DV   N++V G ++NG  D AL+V ++ + + +                  
Sbjct: 266 GVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDL------------------ 307

Query: 246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                            N+VSW  MIA  + N    EA++L+ +M++ G++PN++++  +
Sbjct: 308 -----------------NVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCL 350

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           LPACG+++ALL G+  H +  R  +  ++ + +AL+DMYAKCG +  +R  FD M  +++
Sbjct: 351 LPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNL 410

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           VSW S+++ Y M G+ ++A+ +F  M   G  PD ++F  VLSAC+  GL EEG +YF  
Sbjct: 411 VSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDS 470

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M+  + +  R+EH++C+V LLGR+G++EEAY +IKQMP EP+  +WG+L+++C +++ +D
Sbjct: 471 MSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVD 530

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMN 544
           +G +AA  +F L P   G Y+LLSNIYA    W +V  VR  M S+G+KK PG S +E+ 
Sbjct: 531 LGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIK 590

Query: 545 DQVQII 550
           ++V ++
Sbjct: 591 NKVHML 596



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 118/283 (41%), Gaps = 66/283 (23%)

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           K  +S    I +++  +     + ++  M   GI P++  + +V+  C  LSAL  G+++
Sbjct: 37  KTGISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQM 96

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM-------------------RC 362
           H +     L  +  + ++L+ MY +   L +AR VFD++                   R 
Sbjct: 97  HCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRV 156

Query: 363 QD----------------VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
           ++                +VSW  MIS +  SG   DAV +F  M + GL PD  +  SV
Sbjct: 157 KETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSV 216

Query: 407 LSACS-----------HAGLLEEG----RYYFKIMTEQY-------------KLVPRIEH 438
           L A             H  ++++G    ++    + + Y               +  ++ 
Sbjct: 217 LPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDV 276

Query: 439 FAC--LVDLLGRAGKVEEAYDLIKQMP-MEPNERIWGSLVAAC 478
            AC  LV  L R G V+ A ++ KQ   M+ N   W S++A+C
Sbjct: 277 GACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASC 319


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/551 (34%), Positives = 295/551 (53%), Gaps = 45/551 (8%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +  L+K+ AQII       N  +   ++ ++    QM   RH+FD   +  V  +N + R
Sbjct: 38  VALLQKVQAQII-THGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISR 96

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            Y +N  Y + + ++  M      P+C+T+P VLK+C+   + + G +IHC V+K GL+ 
Sbjct: 97  GYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEG 156

Query: 164 NLFNGNGLVAMYGK-------------------------------CGCLKEARRVLNDMP 192
           N F    L+ +Y                                 C  +  ARR+ +  P
Sbjct: 157 NQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAP 216

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA--SLLPSVTNTSPENVL 250
            +DVV WN MV+GY + G    A  +   M      P  DTM+  ++L    N    +V 
Sbjct: 217 ERDVVLWNIMVSGYIEIGDMKAARKLFDTM------PYRDTMSWNTMLNGYANNG--DVE 268

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPAC 309
           + +++F ++  +N+ SWN +I  YA+N    E +  + +M + G + PN  ++ +VL AC
Sbjct: 269 ACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSAC 328

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L AL LG+ +H Y      + ++ + NAL+DMY+KCG +  A  VF+ M  +D+++W 
Sbjct: 329 ARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWN 388

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           SMI      G G DA+ LF +M ++G  PD I F+ VL +C+H GL+EEG  YF  M  +
Sbjct: 389 SMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNE 448

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y + P+IEH+ C+VDL GRAG ++ A + +K+MPME +  IW +L+ AC +Y N+D+  L
Sbjct: 449 YSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAEL 508

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ-V 547
           A   +  L P     YVLLSNIY   GRW DV R++  M   G KK+PG S +E+ND  V
Sbjct: 509 ALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVV 568

Query: 548 QIIALPLRSSK 558
           +  +L  R S+
Sbjct: 569 EFYSLDERHSQ 579


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 196/524 (37%), Positives = 294/524 (56%), Gaps = 50/524 (9%)

Query: 25  QYTLLSG-DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT 83
           +YT  SG  AC+ + D    ++    +H+ I  +  L S+  IG  L+  Y  CG + D 
Sbjct: 152 EYTFASGLSACSGLNDMNRGVQ----IHSLIAKSPCL-SDVYIGSALVDMYSKCGNVNDA 206

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
           + VFDE+ ++NVV +N LI  Y  N    +AL V++ M     +PD  T   V+ AC+  
Sbjct: 207 QQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASL 266

Query: 144 NSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
           +++ VG ++H  VVK+  L  ++   N  V MY KC  +KEAR + + MP ++V+   SM
Sbjct: 267 SAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSM 326

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK 262
           V+GYA                       A T A+ L                MF K+  +
Sbjct: 327 VSGYAMA---------------------ASTKAARL----------------MFTKMAER 349

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH 322
           N+VSWN +IA Y  N    EA+ L+  ++   + P   + A++L AC DL+ L LG + H
Sbjct: 350 NVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAH 409

Query: 323 RYVERKKL------QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
            +V +         + ++ + N+L+DMY KCG + E   VF +M  +D VSW +MI  + 
Sbjct: 410 VHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFA 469

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
            +G G +A+ LF +ML SG  PD I  + VLSAC HAG +EEGR+YF  MT  + + P  
Sbjct: 470 QNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLR 529

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           +H+ C+VDLLGRAG +EEA  +I++MP++P+  IWGSL+AAC ++ N+ +G   A+ +F 
Sbjct: 530 DHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFE 589

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           +  + SG YVLLSN+YA+ G+WGD   VRK M  +G+ K PG S
Sbjct: 590 VETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCS 633



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 156/313 (49%), Gaps = 37/313 (11%)

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H SV+K G    +F  N L+  Y KCG L++ R++ + MP ++V TWNS+V G  + G 
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
            DEA  + R M                       PE              ++  +WN M+
Sbjct: 102 LDEADSLFRSM-----------------------PE--------------RDQCTWNSMV 124

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           + +A +    EA+  +  M   G   N  + AS L AC  L+ +  G +IH  + +    
Sbjct: 125 SGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCL 184

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            ++ + +ALVDMY+KCG++ +A+ VFD+M  ++VVSW S+I+ Y  +G   +A+ +F  M
Sbjct: 185 SDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVM 244

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
           L S + PD +   SV+SAC+    ++ G+     + +  KL   I      VD+  +  +
Sbjct: 245 LESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSR 304

Query: 452 VEEAYDLIKQMPM 464
           ++EA  +   MP+
Sbjct: 305 IKEARFIFDSMPI 317



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 8/113 (7%)

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           R +H  V +      + ++N L+D YAKCGSL + R +FD+M  ++V +W S+++  G++
Sbjct: 40  RCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVT--GLT 97

Query: 379 GQGY--DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
             G+  +A +LF  M     C     + S++S  +     EE  YYF +M ++
Sbjct: 98  KLGFLDEADSLFRSMPERDQC----TWNSMVSGFAQHDRCEEALYYFAMMHKE 146


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 172/464 (37%), Positives = 266/464 (57%), Gaps = 38/464 (8%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +F   T  ++  +N +I++  N  L  +A+ +Y  +       D Y+ P VLKA     +
Sbjct: 95  IFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLA 154

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           + VG QIHC  +  GL  ++     L+ MY  CGC+ EAR++ + +  +DV  WN+MVAG
Sbjct: 155 IHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAG 214

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           YA+ G  D A                                     + +F ++  +N++
Sbjct: 215 YAKVGDVDNA-------------------------------------RHLFERMPERNVI 237

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           SW  +IA YA    P EA+ ++ +M++  +EP+ I++ + L AC  L AL LG  IH Y+
Sbjct: 238 SWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYI 297

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
           ++  L   + L NAL+DMYAKCG + +A  VF  M  + V++WTSMI    + G G +A+
Sbjct: 298 DKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREAL 357

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
            +FS M  + + P+ I FV++LSAC H GL+E GR+YFK M  +Y + P+I+H+ C++DL
Sbjct: 358 EMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDL 417

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           LGRAG ++EA +L++ MP E N  IWGSL+AA  ++ + ++G  A  H+  + P+ SG Y
Sbjct: 418 LGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNY 477

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            LLSNIYA   +W +   VRK M   G+KKMPG S +E+N++V 
Sbjct: 478 TLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNRVH 521



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 88/167 (52%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y   G + + RH+F+ +  +NV+ +  +I  Y       +A+ +++ M +   +PD    
Sbjct: 215 YAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAM 274

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
              L AC+   +L +G  IH  + K GL   +   N L+ MY KCG +++A  V  +M  
Sbjct: 275 LAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEH 334

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           K V+TW SM+ G A +G   EAL++   ME  RIKP+  T  ++L +
Sbjct: 335 KSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSA 381


>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 183/511 (35%), Positives = 284/511 (55%), Gaps = 41/511 (8%)

Query: 41  YPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           +  +K  ++ H++I+ +  L  N  +  KL+  Y  C     +R VFD + +KNV  +N 
Sbjct: 36  HKSLKLTRQSHSRIL-SLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNS 94

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           LI  Y  N LY +A  ++  M      PD +T   + K  S   +L  G  IH   +++G
Sbjct: 95  LINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIG 154

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
              +    N +++MY KCG  +E+R+V ++M  ++  +WN ++AGYA +G          
Sbjct: 155 FVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSG---------- 204

Query: 221 EMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                                      N++  + +F ++  +N+ SW  MI  Y  N   
Sbjct: 205 ---------------------------NLVVGRRVFDRMKCRNVFSWTAMINGYVENGDS 237

Query: 281 AEAVDLYLQMEV-HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
            EA+ L+  M+V  GIEPN +S+ SVLPAC   S LL GR+IH +  RK+L   + L NA
Sbjct: 238 DEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNA 297

Query: 340 LVDMYAKCGSLTEARTVF-DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           L+DMY+KCGSL  AR VF D   C+D +SW+SMIS YG+ G+G +A+ L+ KML +G+ P
Sbjct: 298 LIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRP 357

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           D I  V +LSACS +GL+ EG   +  +   Y + P +E FAC+VD+LGRAG+++ A D 
Sbjct: 358 DMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDF 417

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
           IK MP+EP   +WG+LV+   ++ ++++  LA   +  L P     YV +SN+YA + RW
Sbjct: 418 IKAMPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRW 477

Query: 519 GDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
             V  VR+ M  K ++K+PG S + +N++  
Sbjct: 478 DAVAEVRRMMKDKRLRKVPGCSWISINNKTH 508


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 172/464 (37%), Positives = 266/464 (57%), Gaps = 38/464 (8%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +F   T  ++  +N +I++  N  L  +A+ +Y  +       D Y+ P VLKA     +
Sbjct: 95  IFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLA 154

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           + VG QIHC  +  GL  ++     L+ MY  CGC+ EAR++ + +  +DV  WN+MVAG
Sbjct: 155 IHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAG 214

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           YA+ G  D A                                     + +F ++  +N++
Sbjct: 215 YAKVGDVDNA-------------------------------------RHLFERMPERNVI 237

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           SW  +IA YA    P EA+ ++ +M++  +EP+ I++ + L AC  L AL LG  IH Y+
Sbjct: 238 SWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYI 297

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
           ++  L   + L NAL+DMYAKCG + +A  VF  M  + V++WTSMI    + G G +A+
Sbjct: 298 DKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREAL 357

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
            +FS M  + + P+ I FV++LSAC H GL+E GR+YFK M  +Y + P+I+H+ C++DL
Sbjct: 358 EMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDL 417

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           LGRAG ++EA +L++ MP E N  IWGSL+AA  ++ + ++G  A  H+  + P+ SG Y
Sbjct: 418 LGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNY 477

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            LLSNIYA   +W +   VRK M   G+KKMPG S +E+N++V 
Sbjct: 478 TLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNRVH 521



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 88/167 (52%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y   G + + RH+F+ +  +NV+ +  +I  Y       +A+ +++ M +   +PD    
Sbjct: 215 YAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAM 274

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
              L AC+   +L +G  IH  + K GL   +   N L+ MY KCG +++A  V  +M  
Sbjct: 275 LAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEH 334

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           K V+TW SM+ G A +G   EAL++   ME  RIKP+  T  ++L +
Sbjct: 335 KSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSA 381


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 180/532 (33%), Positives = 301/532 (56%), Gaps = 34/532 (6%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           +H   + + H  ++  +   L+  Y  CG+M D   VF  +  ++ V +N L+   V N 
Sbjct: 270 IHGAALKSNHF-ADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNE 328

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
           LY DAL+ +++M      PD  +   ++ A   S +LL G ++H   ++ GLD N+  GN
Sbjct: 329 LYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGN 388

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            L+ MY KC C+K        M  KD+++W +++AGYAQN    EA+++ R+++   +  
Sbjct: 389 TLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDV 448

Query: 230 DADTMASLLPSVTNTSPENVLS--------------------------------VKEMFL 257
           D   + S+L + +     N +                                  +  F 
Sbjct: 449 DPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFE 508

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
            + +K++VSW  MI    +N +P EA++L+  ++   I+P++I++ S L A  +LS+L  
Sbjct: 509 SIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKK 568

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           G++IH ++ RK       + ++LVDMYA CG++  +R +F  ++ +D++ WTSMI+A GM
Sbjct: 569 GKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGM 628

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
            G G +A+ALF KM    + PD I F+++L ACSH+GL+ EG+ +F+IM   Y+L P  E
Sbjct: 629 HGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPE 688

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHL 497
           H+AC+VDLL R+  +EEAY  ++ MP++P+  +W +L+ AC ++SN ++G LAA  +   
Sbjct: 689 HYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQS 748

Query: 498 APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
               SG Y L+SNI+A  GRW DV+ VR  M   G+KK PG S +E+++++ 
Sbjct: 749 DTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIH 800



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 210/413 (50%), Gaps = 41/413 (9%)

Query: 37  ILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
           +LD    +K L   ++LHA+++ +   H +  +  KL+  Y  CG + D   VFDE+T +
Sbjct: 52  LLDLCVAVKALPQGQQLHARLLKS---HLSAFLATKLLHMYEKCGSLKDAVKVFDEMTER 108

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
            +  +N ++ ++V++  Y +A+ +YK M V G   D  T+P VLKAC       +G +IH
Sbjct: 109 TIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIH 168

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND--MPSKDVVTWNSMVAGYAQNGR 211
              VK G    +F  N L+AMYGKCG L  AR + +   M  +D V+WNS+++ +   G+
Sbjct: 169 GVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGK 228

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTS----------------------PENV 249
             EAL + R M+ + +  +  T  + L  V + S                        N 
Sbjct: 229 CLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANA 288

Query: 250 L-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
           L             + +F  +  ++ VSWN +++    N +  +A++ +  M+    +P+
Sbjct: 289 LIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPD 348

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
            +SV +++ A G    LL G+++H Y  R  L  N+++ N L+DMYAKC  +      F+
Sbjct: 349 QVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFE 408

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
            M  +D++SWT++I+ Y  +    +A+ LF K+ + G+  D +   SVL ACS
Sbjct: 409 CMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACS 461



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 134/482 (27%), Positives = 241/482 (50%), Gaps = 64/482 (13%)

Query: 70  LMRTYGACGQMVDTRHVFDEI--TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD 127
           L+  YG CG +   R +FD I    ++ V +N +I ++V      +AL +++ M   G  
Sbjct: 186 LIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVA 245

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
            + YT+   L+     + + +G+ IH + +K     +++  N L+AMY KCG +++A RV
Sbjct: 246 SNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERV 305

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE 247
              M  +D V+WN++++G  QN  + +AL+  R+M++   KPD  ++ +L+ +   +   
Sbjct: 306 FASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSG-- 363

Query: 248 NVLSVKEM-----------------------------------FLKLDNKNLVSWNVMIA 272
           N+L+ KE+                                   F  +  K+L+SW  +IA
Sbjct: 364 NLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIA 423

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            YA N    EA++L+ +++V G++ + + + SVL AC  L +    R+IH YV ++ L  
Sbjct: 424 GYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL-A 482

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           ++ L+NA+V++Y + G    AR  F+ +R +D+VSWTSMI+    +G   +A+ LF  + 
Sbjct: 483 DIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLK 542

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF------ACLVDLL 446
            + + PDSIA +S LSA ++   L++G+       E +  + R   F      + LVD+ 
Sbjct: 543 QTNIQPDSIAIISALSATANLSSLKKGK-------EIHGFLIRKGFFLEGPIASSLVDMY 595

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLV----------AACCLYSNMDIGILAADHIFH 496
              G VE +  +   +  + +  +W S++           A  L+  M    +  DHI  
Sbjct: 596 ACCGTVENSRKMFHSVK-QRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITF 654

Query: 497 LA 498
           LA
Sbjct: 655 LA 656



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 110/217 (50%), Gaps = 15/217 (6%)

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           ++F ++  + + +WN M+  + ++    EA++LY +M V G+  +A +  SVL ACG L 
Sbjct: 100 KVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALG 159

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD--QMRCQDVVSWTSM 371
              LG +IH    +      + + NAL+ MY KCG L  AR +FD   M  +D VSW S+
Sbjct: 160 ESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSI 219

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           ISA+   G+  +A++LF +M   G+  ++  FV+ L          E   + K+    + 
Sbjct: 220 ISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGV-------EDPSFVKLGMGIHG 272

Query: 432 LVPRIEHFA------CLVDLLGRAGKVEEAYDLIKQM 462
              +  HFA       L+ +  + G++E+A  +   M
Sbjct: 273 AALKSNHFADVYVANALIAMYAKCGRMEDAERVFASM 309



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 120/259 (46%), Gaps = 44/259 (16%)

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           +L  C  + AL  G+++H  + +  L     L   L+ MY KCGSL +A  VFD+M  + 
Sbjct: 52  LLDLCVAVKALPQGQQLHARLLKSHLSA--FLATKLLHMYEKCGSLKDAVKVFDEMTERT 109

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
           + +W +M+ A+  SG+  +A+ L+ +M + G+  D+  F SVL AC   G L E R   +
Sbjct: 110 IFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKAC---GALGESRLGAE 166

Query: 425 IMTEQYKLVPRIEHFAC--LVDLLGRAGKVEEAYDLIKQMPMEPNERI-WGSLVA----- 476
           I     K       F C  L+ + G+ G +  A  L   + ME  + + W S+++     
Sbjct: 167 IHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTE 226

Query: 477 -----ACCLYSNM-DIGILAADHIF-------------------HLAPNQSGYY--VLLS 509
                A  L+  M ++G+ +  + F                   H A  +S ++  V ++
Sbjct: 227 GKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVA 286

Query: 510 N----IYAKAGRWGDVKRV 524
           N    +YAK GR  D +RV
Sbjct: 287 NALIAMYAKCGRMEDAERV 305


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 187/479 (39%), Positives = 271/479 (56%), Gaps = 38/479 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  CG +   R +FDE  +KN+V +N ++ +YV   L  + L V   M  HG  PD
Sbjct: 281 LVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPD 340

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T    + ACS  + +  G   H  V++ GL+      N ++ MY KCG  + A RV +
Sbjct: 341 RITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFD 400

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            M +K  V+WNS++AG+ +NG  + A  +   M      PD+D                 
Sbjct: 401 RMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAM------PDSD----------------- 437

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                         LVSWN MI      SM  EA++L+  M+  GI  + +++  V  AC
Sbjct: 438 --------------LVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASAC 483

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
           G L AL L + IH Y+++K +  ++ L  ALVDM+A+CG    A  VF++M  +DV +WT
Sbjct: 484 GYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWT 543

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           + I A  M G G  A+ LF +ML  G+ PD + FV++L+A SH GL+E+G + F+ M + 
Sbjct: 544 AAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDI 603

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y + P+  H+ C+VDLLGRAG + EA  LI  M MEPN+ IWGSL+AAC ++ N+DI   
Sbjct: 604 YGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAY 663

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
           AA+ I  L P ++G +VLLSNIYA AGRW DV +VR  +  KG  KMPG +S+E+N ++
Sbjct: 664 AAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKI 722



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 143/553 (25%), Positives = 244/553 (44%), Gaps = 91/553 (16%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD------TRHVFDEIT 91
             K   +  LK+LH+QI  N  L+ +P   L L     +C +M         +   +   
Sbjct: 40  FKKCKTMTELKQLHSQITKNG-LNHHP---LSLTNLISSCTEMGTFESLEYAQKALELFI 95

Query: 92  NKNVVF-----FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL 146
             N +      F+ LIR +    L Y A+ V++ +   G  PD +T+P VL AC+ S +L
Sbjct: 96  EDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAAL 155

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY 206
             G Q+H ++VK+G + ++F  N L+  YG+CG +   RRV + M  ++VV+W S++ GY
Sbjct: 156 TEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGY 215

Query: 207 AQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT----------------------NT 244
           A+ G + EA+ +  EM  + I+P++ TM  ++ +                        N 
Sbjct: 216 AKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNA 275

Query: 245 SPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
              N L             +++F +  +KNLV +N +++ Y    +  E + +  +M  H
Sbjct: 276 LMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKH 335

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
           G  P+ I++ S + AC +L  +  G+  H YV R  L+    + NA+++MY KCG    A
Sbjct: 336 GPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMA 395

Query: 354 RTVFDQMRCQ-------------------------------DVVSWTSMISAYGMSGQGY 382
             VFD+M  +                               D+VSW +MI A        
Sbjct: 396 CRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFK 455

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY---YFKIMTEQYKLVPRIEHF 439
           +A+ LF  M   G+  D +  V V SAC + G L+  ++   Y K     + +     H 
Sbjct: 456 EAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDM-----HL 510

Query: 440 A-CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH-- 496
              LVD+  R G  + A  +  +M ++ +   W + + A  +  N    I   D +    
Sbjct: 511 GTALVDMFARCGDPQSAMQVFNKM-VKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQG 569

Query: 497 LAPNQSGYYVLLS 509
           + P+   +  LL+
Sbjct: 570 IKPDGVVFVALLT 582



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 2/152 (1%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           I  + +H +  +G  L+  +  CG       VF+++  ++V  +   I +         A
Sbjct: 499 IKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGA 558

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV-GLDYNLFNGNGLVA 173
           + ++  M   G  PD   +  +L A S    +  G  I  S+  + G+     +   +V 
Sbjct: 559 IELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVD 618

Query: 174 MYGKCGCLKEARRVLNDMPSK-DVVTWNSMVA 204
           + G+ G L EA  ++N M  + + V W S++A
Sbjct: 619 LLGRAGLLSEALSLINSMQMEPNDVIWGSLLA 650


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 189/542 (34%), Positives = 299/542 (55%), Gaps = 39/542 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+K  K++H  +I +     N      ++  Y  C Q+ D  ++FD +  +++V +N +I
Sbjct: 45  DLKRGKEIHGSVITSG-FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMI 103

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             Y  N     AL +   MS  G  PD  T   +L A + +  L +G+ +H  V++ G +
Sbjct: 104 SGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFE 163

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR----------- 211
             +     LV MY KCG +  AR + + M  + VV+WNSM+ GY Q+G            
Sbjct: 164 SLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKM 223

Query: 212 FDE-----------ALDVCREM-------------ESLRIKPDADTMASLLPSVTNTSPE 247
            DE           AL  C ++             + L++  D   M SL+   +     
Sbjct: 224 LDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRV 283

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
           ++ +  ++F  L NK LVSWN MI  YA N    EA++ + +M+   I+P++ ++ SV+P
Sbjct: 284 DIAA--DIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIP 341

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           A  +LS     + IH  V R+ L  N+ +  ALVDMYAKCG++  AR +FD M  + V++
Sbjct: 342 ALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVIT 401

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W +MI  YG  G G  +V LF +M    + P+ I F+  LSACSH+GL+EEG  +F+ M 
Sbjct: 402 WNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMK 461

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
           + Y + P ++H+  +VDLLGRAG++ +A+D I++MP++P   ++G+++ AC ++ N+D+G
Sbjct: 462 KDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLG 521

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
             AA  IF L P+  GY+VLL+NIYA A  WG V +VR  M   G++K PG S VE+ ++
Sbjct: 522 EKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNE 581

Query: 547 VQ 548
           V 
Sbjct: 582 VH 583



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 195/395 (49%), Gaps = 34/395 (8%)

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           +++ Y  +     AL  +  M      P  Y +  +LK C  ++ L  G +IH SV+  G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
             +NLF   G+V MY KC  + +A  + + MP +D+V WN+M++GYAQNG    AL +  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 221 EMESLRIKPDADTMASLLPSVTNT----------------SPENVLSV------------ 252
            M     +PD+ T+ S+LP+V +T                  E++++V            
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 253 -----KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                + +F  +D++ +VSWN MI  Y  +     A+ ++ +M   G++P  ++V   L 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           AC DL  L  G+ +H+ V++ KL  ++ + N+L+ MY+KC  +  A  +F  +R + +VS
Sbjct: 241 ACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVS 300

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W +MI  Y  +G   +A+  F +M    + PDS   VSV+ A +   +  + ++   ++ 
Sbjct: 301 WNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVI 360

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
            ++ L   +     LVD+  + G +  A  L   M
Sbjct: 361 RRF-LDKNVFVMTALVDMYAKCGAIHTARKLFDMM 394


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 182/504 (36%), Positives = 277/504 (54%), Gaps = 31/504 (6%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +   +  +K LK +HA ++    L  +  +  K++R     G    +  +F +    N+ 
Sbjct: 16  LFQGFNSLKHLKHVHAALL-RLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIF 74

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            FN +I   V N  + +++ +Y +M   G  PD +T+P +LKAC+      +G+++H  V
Sbjct: 75  LFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLV 134

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           VK G + + F    LV++YGKCG +  A +V +D+P K+V  W ++++GY   G+  EA+
Sbjct: 135 VKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAI 194

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
           D+ R   S+                              F  +  K++VSW+ MI  YA+
Sbjct: 195 DMFRRACSV------------------------------FDGMLEKDIVSWSSMIQGYAS 224

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N +P EA+DL+ +M   G  P+  ++  VL AC  L AL LG      ++R +   N  L
Sbjct: 225 NGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVL 284

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
             AL+DMYAKCG +  A  VF  MR +D+V W + IS   MSG    A  LF +M  SG+
Sbjct: 285 GTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGI 344

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PD   FV +L AC+HAGL++EGR YF  M   + L P IEH+ C+VDLLGRAG ++EA+
Sbjct: 345 EPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAH 404

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
            L+K MPME N  +WG+L+  C L+ +  +       +  L P+ SG YVLLSNIY+ + 
Sbjct: 405 QLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASH 464

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS 540
           +W D  ++R  M+ +GIKK+PG S
Sbjct: 465 KWEDAAKIRSIMSERGIKKVPGYS 488


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 181/509 (35%), Positives = 289/509 (56%), Gaps = 43/509 (8%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT--RHVFDEITNKN 94
           +L     I  +K++HA I   + L     +  KL+RT       +D   R VF ++   N
Sbjct: 45  VLHGCTHINQVKQVHAHIF-RKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPN 103

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
              +  LIR Y     + +++ +Y +M   G  P  +T+  +LKACS +  + +G Q+H 
Sbjct: 104 PFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHT 163

Query: 155 SVVKVG-LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
             + +G    +L+ GN L+ MY KCGCL    RV ++M  +DV++W S++  YA+ G   
Sbjct: 164 QTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVG--- 220

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273
                                             N+ +  E+F  L  K++V+W  M+  
Sbjct: 221 ----------------------------------NMEAASELFDGLPMKDMVAWTAMVTG 246

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP- 332
           YA N+ P EA++++ +M+  G++ + +++  V+ AC  L A      +    E+    P 
Sbjct: 247 YAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPT 306

Query: 333 -NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            N+ + +AL+DMYAKCGS+ +A  VF++M  ++V S++SMI  + M G    A+ LF +M
Sbjct: 307 SNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEM 366

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
           L + + P+ + F+ VL+ACSHAG++E+G+  F +M E + + P  +H+AC+VDLLGRAG+
Sbjct: 367 LKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGR 426

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
           +EEA +L+K MPM P+  +WG+L+ AC ++ N D+  +AA H+F L PN  G Y+LLSNI
Sbjct: 427 LEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNI 486

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           YA AGRW DV +VRK M +KG+KK PG S
Sbjct: 487 YASAGRWDDVSKVRKLMRAKGLKKNPGCS 515


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 183/542 (33%), Positives = 310/542 (57%), Gaps = 51/542 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLK---LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           ++LHA +     L S   + ++   L+  Y  CG++     VF EI  K+ + +N ++  
Sbjct: 286 RELHAAL-----LKSGSEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSC 340

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL---LVGLQIHCSVVKVGL 161
           YV N LY +A+     M   GF PD   + C++   S    L   L G ++H   +K  L
Sbjct: 341 YVQNGLYAEAIEFISEMLRGGFQPD---HACIVSLSSAVGHLGWLLNGKEVHAYAIKQRL 397

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           D +   GN L+ MY KC  ++ +  V + M  KD ++W +++  YAQ+ R  EAL++ RE
Sbjct: 398 DSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFRE 457

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKE--------------------------- 254
            +   IK D   + S+L + +    E +L  K+                           
Sbjct: 458 AQKEGIKVDPMMIGSILEACSGL--ETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECG 515

Query: 255 -------MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                  MF  ++ K++V+W  MI  YAN+ +  EA+ L+ +M+   ++P+++++ S+L 
Sbjct: 516 EVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILG 575

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           A G LS+L  G+++H ++ R+       + ++LVDMY+ CGSL+ A  VF+ ++C+D+V 
Sbjct: 576 AIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVL 635

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           WT+MI+A GM G G  A+ LF +ML +G+ PD ++F+++L ACSH+ L+ EG+ Y  +M 
Sbjct: 636 WTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMM 695

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
             Y+L P  EH+AC+VDLLGR+G+ EEAY+ IK MP++P   +W SL+ AC ++ N ++ 
Sbjct: 696 STYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELA 755

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
           ++AA+ +  L P+  G YVL+SN++A+ G+W + K VR  ++ +G++K P  S +E+ + 
Sbjct: 756 VVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNN 815

Query: 547 VQ 548
           V 
Sbjct: 816 VH 817



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 138/466 (29%), Positives = 232/466 (49%), Gaps = 44/466 (9%)

Query: 49  KLHAQIIINQHLHSNPS-IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++HA  +    L  +   +  KL+  YG CG++ D R +FD ++++ V  +N LI +Y++
Sbjct: 79  QVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLS 138

Query: 108 NYLYYDALHVYKNM---SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
           +    +AL VY+ M   +  G  PD  T   VLKA         G ++H   VK GLD +
Sbjct: 139 SGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRS 198

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDM-PSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
            F  N L+AMY KCG L  A RV   M   +DV +WNSM++G  QNG F +ALD+ R M+
Sbjct: 199 TFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQ 258

Query: 224 SLRIKPDADTMASLLPSVTNTSPEN--------------------------------VLS 251
              +  ++ T   +L   T  +  N                                V S
Sbjct: 259 RAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLVMYTKCGRVDS 318

Query: 252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
              +F ++D K+ +SWN M++ Y  N + AEA++   +M   G +P+   + S+  A G 
Sbjct: 319 ALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGH 378

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           L  LL G+++H Y  +++L  + ++ N L+DMY KC  +  +  VFD+MR +D +SWT++
Sbjct: 379 LGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTI 438

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS--HAGLLEEGRYYFKIMTEQ 429
           I+ Y  S +  +A+ +F +    G+  D +   S+L ACS     LL +  + + I    
Sbjct: 439 ITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL 498

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
             LV +      ++D+ G  G+V  +  + + +  + +   W S++
Sbjct: 499 LDLVVKNR----IIDIYGECGEVYHSLKMFETVE-QKDIVTWTSMI 539



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 201/385 (52%), Gaps = 36/385 (9%)

Query: 70  LMRTYGACGQMVDTRHVFDEITN-KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
           L+  Y  CG +     VF+ + + ++V  +N +I   + N ++  AL +++ M       
Sbjct: 205 LIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSM 264

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           + YT   VL+ C+    L +G ++H +++K G + N+   N L+ MY KCG +  A RV 
Sbjct: 265 NSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNI-QCNALLVMYTKCGRVDSALRVF 323

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT------ 242
            ++  KD ++WNSM++ Y QNG + EA++   EM     +PD   + SL  +V       
Sbjct: 324 REIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLL 383

Query: 243 NTSPENVLSVKE---------------------------MFLKLDNKNLVSWNVMIAVYA 275
           N    +  ++K+                           +F ++  K+ +SW  +I  YA
Sbjct: 384 NGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYA 443

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            +S   EA++++ + +  GI+ + + + S+L AC  L  +LL +++H Y  R  L  +L 
Sbjct: 444 QSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLL-DLV 502

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           ++N ++D+Y +CG +  +  +F+ +  +D+V+WTSMI+ Y  SG   +A+ LF++M  + 
Sbjct: 503 VKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTD 562

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGR 420
           + PDS+A VS+L A      L +G+
Sbjct: 563 VQPDSVALVSILGAIGGLSSLAKGK 587



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 161/338 (47%), Gaps = 46/338 (13%)

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA-----MYGKCG 179
           G  P    Y  VL   +   ++  G+Q+H   V  G   +L   +G +A     MYGKCG
Sbjct: 53  GRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATG---SLEGDDGFLATKLLFMYGKCG 109

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME---SLRIKPDADTMAS 236
            + +AR + + M S+ V +WN+++  Y  +G   EAL V R M    +  + PD  T+AS
Sbjct: 110 RVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLAS 169

Query: 237 LLPSV----------------------TNTSPENVL-----------SVKEMF-LKLDNK 262
           +L +                        +T   N L           S   +F L  D +
Sbjct: 170 VLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGR 229

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH 322
           ++ SWN MI+    N M  +A+DL+  M+   +  N+ +   VL  C +L+ L LGR++H
Sbjct: 230 DVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELH 289

Query: 323 RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY 382
             + +   + N++  NAL+ MY KCG +  A  VF ++  +D +SW SM+S Y  +G   
Sbjct: 290 AALLKSGSEVNIQC-NALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYA 348

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           +A+   S+ML  G  PD    VS+ SA  H G L  G+
Sbjct: 349 EAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGK 386



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 105/215 (48%), Gaps = 5/215 (2%)

Query: 37  ILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
           IL+    ++T+   K+LH   I N  L  +  +  +++  YG CG++  +  +F+ +  K
Sbjct: 473 ILEACSGLETILLAKQLHCYAIRNGLL--DLVVKNRIIDIYGECGEVYHSLKMFETVEQK 530

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           ++V +  +I  Y N+ L  +AL ++  M      PD      +L A  G +SL  G ++H
Sbjct: 531 DIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVH 590

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
             +++          + LV MY  CG L  A +V N +  KD+V W +M+     +G   
Sbjct: 591 GFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGK 650

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
           +A+D+ + M    + PD  +  +LL + +++   N
Sbjct: 651 QAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVN 685


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 178/474 (37%), Positives = 282/474 (59%), Gaps = 40/474 (8%)

Query: 86  VFDEITNKNVVF-FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
           +F++  +K  VF +N +I     +    +AL  + +M      P+  T+PC +K+CS   
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
            L  G Q H   +  G + +LF  + LV MY KCG L++AR + +++  +++V+W SM+ 
Sbjct: 91  DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 150

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL 264
           GY QN     AL V                                     F  +  +++
Sbjct: 151 GYVQNDDAHRALRV-------------------------------------FDGMAERDV 173

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHR 323
           +SWN +IAVYA N M  E+++++ +M   G I  NA+++++VL AC    +  LG+ IH 
Sbjct: 174 ISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHD 233

Query: 324 YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383
            V +  L+ N+ +  +++DMY KCG +  AR  FD+MR ++V SW++M++ YGM G   +
Sbjct: 234 QVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKE 293

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV 443
           A+ +F +M M+G+ P+ I FVSVL+ACSHAGLLEEG ++FK M+ ++ + P +EH+ C+V
Sbjct: 294 ALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMV 353

Query: 444 DLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503
           DLLGRAG ++EA+DLIK M + P+  +WG+L+ AC ++ N+D+G ++A  +F L P   G
Sbjct: 354 DLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCG 413

Query: 504 YYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           YYVLLSNIYA AGRW DV+R+R  M + G+ K PG S V++  +V +  +  R 
Sbjct: 414 YYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDRE 467



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 140/302 (46%), Gaps = 39/302 (12%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+ + ++ H Q +I      +  +   L+  Y  CG++ D R +FDEI+++N+V +  +I
Sbjct: 91  DLHSGRQAHQQALIFG-FEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 149

Query: 103 RSYVNNYLYYDALHVYKNMS--------------------------VHGFDPD------C 130
             YV N   + AL V+  M+                           H    D       
Sbjct: 150 TGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNA 209

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
            T   VL AC+ S S  +G  IH  V+K+GL+ N+F G  ++ MY KCG ++ AR+  + 
Sbjct: 210 VTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDR 269

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS--PEN 248
           M  K+V +W++MVAGY  +G   EAL+V  EM    +KP+  T  S+L + ++     E 
Sbjct: 270 MREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 329

Query: 249 VLSVKEMFLKLD-NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
               K M  + D    +  +  M+ +        EA DL   M+   + P+ +   ++L 
Sbjct: 330 WHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMK---LRPDFVVWGALLG 386

Query: 308 AC 309
           AC
Sbjct: 387 AC 388


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 192/574 (33%), Positives = 313/574 (54%), Gaps = 73/574 (12%)

Query: 46  TLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD----TRHVFDEITNKNVVFFNVL 101
           +L+ +HAQ+I    LH N +  L  +  +       D       VF+ I   N++ +N +
Sbjct: 2   SLRMIHAQMI-KTGLH-NTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTM 59

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
            R +  +     AL++Y  M   G  P+CYT+P +LK+C+ S +   G QIH  V+K+G 
Sbjct: 60  FRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGY 119

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLN-------------------------------D 190
           D +L+    L++MY + G L++AR+V +                               +
Sbjct: 120 DLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDE 179

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP---- 246
           +P KDVV+WN+M++GYA+ G   EAL++ +EM    ++PD  TM S++ +   ++     
Sbjct: 180 IPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELG 239

Query: 247 -----------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
                                          V +   +F  L  K+++SWN +I  Y + 
Sbjct: 240 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHM 299

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER--KKLQPNLR 335
           ++  EA+ L+ +M   G  PN +++ S+LPAC  L A+ +GR IH Y+ +  K +     
Sbjct: 300 NLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASS 359

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
              +L+DMYAKCG +  A+ VFD +  + + SW +MI  + M G+   A  +FS+M  + 
Sbjct: 360 HRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNE 419

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + PD I FV +LSACSH+G+L+ GR+ F+ M E YK+ P++EH+ C++DLLG +G  +EA
Sbjct: 420 IEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEA 479

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
            ++I  M MEP+  IW SL+ AC ++ N+++G   A ++  + P   G YVLLSNIYA A
Sbjct: 480 EEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATA 539

Query: 516 GRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           GRW +V ++R  +N KG+KK+PG +S+E++  V 
Sbjct: 540 GRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVH 573


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 188/533 (35%), Positives = 296/533 (55%), Gaps = 73/533 (13%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VF  I   N + +N ++R Y  +     AL +Y  M   G  P+ YT+P +LK+C+ S +
Sbjct: 22  VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKA 81

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN---------------- 189
              G QIH  V+K+G + +L+    L++MY + G L++A +V +                
Sbjct: 82  FEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITG 141

Query: 190 ---------------DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
                          ++P KDVV+WN+M++GYA+ G + EAL++ +EM    ++PD  TM
Sbjct: 142 YASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTM 201

Query: 235 ASLLPSVTNTSP---------------------------------ENVLSVKEMFLKLDN 261
            ++L +   +                                     V +   +F  L  
Sbjct: 202 VTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSC 261

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           K++VSWN +I  Y + ++  EA+ L+ +M   G  PN +++ S+LPAC  L A+ +GR I
Sbjct: 262 KDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWI 321

Query: 322 HRYVERKKLQ-----PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
           H Y++ KKL+     P+LR   +L+DMYAKCG +  A  VF+ M  + + SW +MI  + 
Sbjct: 322 HVYID-KKLKDVTNAPSLR--TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFA 378

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
           M G+      LFS+M  +G+ PD I FV +LSACSH+G L+ GR+ FK MT+ Y + P++
Sbjct: 379 MHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKL 438

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           EH+ C++DLLG +G  +EA ++IK MPMEP+  IW SL+ AC  + N+++    A ++  
Sbjct: 439 EHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMK 498

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           + P   G YVLLSNIYA AG W +V +VR  +N KG+KK+PG +S+E++ +V 
Sbjct: 499 VEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVH 551



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 165/360 (45%), Gaps = 37/360 (10%)

Query: 52  AQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLY 111
           A  + ++  H +      L+  Y + G +   + +FDEI  K+VV +N +I  Y     Y
Sbjct: 120 AHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSY 179

Query: 112 YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGL 171
            +AL ++K M      PD  T   VL AC+ S S+ +G Q+H  +   G   NL   N L
Sbjct: 180 KEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNAL 239

Query: 172 VAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA 231
           + +Y KCG ++ A  +   +  KDVV+WN+++ GY     + EAL + +EM      P+ 
Sbjct: 240 IDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPND 299

Query: 232 DTMASLLPS-----------------------VTNTSP------------ENVLSVKEMF 256
            T+ S+LP+                       VTN                ++ +  ++F
Sbjct: 300 VTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVF 359

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
             + +K+L SWN MI  +A +       DL+ +M  +GIEP+ I+   +L AC     L 
Sbjct: 360 NSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLD 419

Query: 317 LGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
           LGR I + + +   + P L     ++D+    G   EA+ +   M  + D V W S++ A
Sbjct: 420 LGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKA 479



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 148/319 (46%), Gaps = 20/319 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++H+ I  +    SN  I   L+  Y  CGQ+     +F+ ++ K+VV +N LI  Y +
Sbjct: 218 RQVHSWID-DHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTH 276

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
             LY +AL +++ M   G  P+  T   +L AC+   ++ +G  IH  + K   D     
Sbjct: 277 MNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAP 336

Query: 168 G--NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
                L+ MY KCG ++ A +V N M  K + +WN+M+ G+A +GR +   D+   M   
Sbjct: 337 SLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKN 396

Query: 226 RIKPDADTMASLLPSVTNTSPENVLS--VKEMFLKLD-NKNLVSWNVMIAVYANNSMPAE 282
            I+PD  T   LL + +++   ++     K M    D    L  +  MI +  ++ +  E
Sbjct: 397 GIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKE 456

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA--- 339
           A ++   M    +EP+ +   S+L AC     L L     R +   K++P    EN    
Sbjct: 457 AKEMIKTMP---MEPDGVIWCSLLKACRRHGNLELAESFARNL--MKVEP----ENPGSY 507

Query: 340 --LVDMYAKCGSLTEARTV 356
             L ++YA  G   E   V
Sbjct: 508 VLLSNIYATAGEWDEVAKV 526



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           A +VF  ++  + + W +M+  Y +S     A+ L+  M+  GL P+S  F  +L +C+ 
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 413 AGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
           +   EEG+  +  ++   Y+  P +     L+ +  + G++E+A+ +  +
Sbjct: 79  SKAFEEGQQIHGHVLKLGYE--PDLYVHTSLISMYAQNGRLEDAHKVFDR 126


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 189/570 (33%), Positives = 310/570 (54%), Gaps = 76/570 (13%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LHAQ++  Q         L  +  Y     + D+  +F+ I     + +  +IR Y +
Sbjct: 26  QQLHAQVLKFQASSLCNLSLLLSI--YSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTS 83

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           + L + +L  +  M   G  PD   +P VLK+C+    L +G  +H  +++VGLD++L+ 
Sbjct: 84  HGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYT 143

Query: 168 GNGLVAMYGKCGCLKEA--------------------------------RRVLNDMPSKD 195
           GN L+ MY K   L+E+                                R++   MP KD
Sbjct: 144 GNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKD 203

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV------ 249
           +V+WN+++AG A+NG ++E L + REM    +KPD+ T++S+LP +     ENV      
Sbjct: 204 LVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIA----ENVDISRGK 259

Query: 250 ----LSVKE---------------------------MFLKLDNKNLVSWNVMIAVYANNS 278
                S+++                           +F  L  ++ +SWN +IA    N 
Sbjct: 260 EIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNG 319

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
           +  E +  + QM +  I+P + S +S++PAC  L+ L LG+++H Y+ R     N+ + +
Sbjct: 320 LFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIAS 379

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           +LVDMYAKCG++  A+ +FD+MR +D+VSWT+MI    + GQ  DA+ LF +M   G+ P
Sbjct: 380 SLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKP 439

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           + +AF++VL+ACSH GL++E   YF  MT  + + P +EH+A + DLLGRAG++EEAYD 
Sbjct: 440 NHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDF 499

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
           I  M + P   IW +L++AC ++ N+D+    A+ I  + PN +G Y+LL+NIY+ A RW
Sbjct: 500 ICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRW 559

Query: 519 GDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
            +  + R  M   GI+K P  S +E+ ++V
Sbjct: 560 KEAAKWRASMRRIGIRKTPACSWIEVKNKV 589



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 113/201 (56%), Gaps = 1/201 (0%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           DI   K++H    I Q L ++  +   L+  Y  C ++ D+  VF  +T ++ + +N +I
Sbjct: 254 DISRGKEIHG-CSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSII 312

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
              V N L+ + L  ++ M +    P  Y++  ++ AC+   +L +G Q+H  + + G D
Sbjct: 313 AGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 372

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            N+F  + LV MY KCG ++ A+++ + M  +D+V+W +M+ G A +G+  +A+++  +M
Sbjct: 373 ENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQM 432

Query: 223 ESLRIKPDADTMASLLPSVTN 243
           E+  IKP+     ++L + ++
Sbjct: 433 ETEGIKPNHVAFMAVLTACSH 453


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 182/531 (34%), Positives = 291/531 (54%), Gaps = 68/531 (12%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VF+     N++ +N ++R   ++      L +Y  M   G  P+ YT+P +LK+C+ S +
Sbjct: 39  VFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKT 98

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND--------------- 190
              G QIH  V+K+G + + +    L++MY + G L++AR+V +                
Sbjct: 99  FEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITG 158

Query: 191 ----------------MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
                           +  +DVV+WN+M+ GY +N  ++EAL++ +EM    ++PD  T+
Sbjct: 159 YASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTL 218

Query: 235 ASLLPSVTNTSP----------------------------------ENVLSVKEMFLKLD 260
            S+L +   +                                     +V     +F  L 
Sbjct: 219 VSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLS 278

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
            K++VSWN +I  Y + ++  EA+ L+ +M   G  PN +++ SVLPAC  L A+ +GR 
Sbjct: 279 CKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRW 338

Query: 321 IHRYVER--KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           IH Y+++  K +     L  +L+DMYAKCG +  A  VF+ M  + + SW +MI  + M 
Sbjct: 339 IHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMH 398

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           G+   A  LFS+M  +G+ PD I  V +LSACSH+GLL+ GR+ FK +T+ Y + P++EH
Sbjct: 399 GRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEH 458

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
           + C++DLLG AG  +EA ++I  MPMEP+  IW SL+ AC ++ N+++    A  +  + 
Sbjct: 459 YGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIE 518

Query: 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           P  SG YVLLSNIYA AGRW DV R+R+ +N KG+KK+PG +S+E++  V 
Sbjct: 519 PENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVH 569



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 182/387 (47%), Gaps = 39/387 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y + G +   R VFD IT ++VV +N +I  YV N  Y +AL ++K M      PD
Sbjct: 155 LITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPD 214

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSV-VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
             T   VL AC+ S S+ +G +IH  V    G   +L   N  + +Y KCG ++ A  + 
Sbjct: 215 EGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLF 274

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS-------- 240
             +  KDVV+WN+++ GY     + EAL + +EM      P+  TM S+LP+        
Sbjct: 275 EGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAID 334

Query: 241 ---------------VTNTSP------------ENVLSVKEMFLKLDNKNLVSWNVMIAV 273
                          VTN S              ++ +  ++F  + +K+L SWN MI  
Sbjct: 335 IGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFG 394

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQP 332
           +A +     A DL+ +M  +GIEP+ I++  +L AC     L LGR I + V +   + P
Sbjct: 395 FAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITP 454

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYDAVALFSKM 391
            L     ++D+    G   EA  +   M  + D V W S++ A  M G   +    F++ 
Sbjct: 455 KLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGN-LELAESFAQK 513

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEE 418
           LM     +S ++V + +  + AG  E+
Sbjct: 514 LMEIEPENSGSYVLLSNIYATAGRWED 540



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 172/386 (44%), Gaps = 41/386 (10%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           N  IGL     Y  CG +     +F+ ++ K+VV +N LI  Y +  LY +AL +++ M 
Sbjct: 255 NAFIGL-----YSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEML 309

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK--VGLDYNLFNGNGLVAMYGKCGC 180
             G  P+  T   VL AC+   ++ +G  IH  + K   G+         L+ MY KCG 
Sbjct: 310 RSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGD 369

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           ++ A +V N M  K + +WN+M+ G+A +GR + A D+   M    I+PD  T+  LL +
Sbjct: 370 IEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSA 429

Query: 241 VTNTSPENVLSVKEMFLKLDNKN------LVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
            +++    +L +     K   ++      L  +  MI +  +  +  EA ++   M    
Sbjct: 430 CSHS---GLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMP--- 483

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA-----LVDMYAKCGS 349
           +EP+ +   S+L AC     L L     + +   +++P    EN+     L ++YA  G 
Sbjct: 484 MEPDGVIWCSLLKACKMHGNLELAESFAQKL--MEIEP----ENSGSYVLLSNIYATAGR 537

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
                   D  R ++V++   M    G S    D+V +   ++   L P S     +L  
Sbjct: 538 WE------DVARIREVLNGKGMKKVPGCSSIEIDSV-VHEFIIGDKLHPQSREIYRMLEE 590

Query: 410 ----CSHAGLLEEGRYYFKIMTEQYK 431
                  AG + +     + M E++K
Sbjct: 591 MDVLLEEAGFVPDTSEVLQEMEEEWK 616



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           A +VF+  +  +++ W +M+     S      + ++ +M+  G  P++  F  +L +C+ 
Sbjct: 36  AVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAK 95

Query: 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFA--CLVDLLGRAGKVEEA 455
           +   EEGR   +I  +  KL   ++ +A   L+ +  R G++E+A
Sbjct: 96  SKTFEEGR---QIHAQVMKLGCELDRYAHTSLISMYARNGRLEDA 137


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 185/541 (34%), Positives = 307/541 (56%), Gaps = 35/541 (6%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFD--EITNKNVVFFNVL 101
           I+T + +H  ++ N     N  +   L+  Y  C  + +   +F   E   KN V +  +
Sbjct: 178 IQTGEMIHGFVVKNG-FEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAM 236

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           +  Y  N   Y A+  ++ M   G + + YT+P +L ACS   +   G Q+H  +VK G 
Sbjct: 237 VTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGF 296

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             N++  + LV MY KCG LK A+ +L  M   DVV+WNS++ G+ ++G  +EAL + + 
Sbjct: 297 GSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKN 356

Query: 222 MESLRIKPDADTMASLLPS--VTNTSPENV--LSVKE----------------------- 254
           M    +K D  T  S+L    V + +P++V  L +K                        
Sbjct: 357 MHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMD 416

Query: 255 ----MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
               +F K+  K+++SW  ++  YA N+   E++ ++  M V G+ P+   VAS+L AC 
Sbjct: 417 CAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACA 476

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           +L+ L  G+++H    +  L+ +  + N+LV MYAKCG L +A  +F  M+ +DV++WT+
Sbjct: 477 ELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTA 536

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           +I  Y  +G+G +++  +  M+ SG  PD I F+ +L ACSHAGL++EGR YF+ M + Y
Sbjct: 537 IIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVY 596

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            + P  EH+AC++DL GR+GK++EA  L+ QM ++P+  +W SL++AC ++ N+++   A
Sbjct: 597 GIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERA 656

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQI 549
           A ++F L P  +  YV+LSN+Y+ + +W DV ++RK M SKGI K PG S +E+N +V  
Sbjct: 657 ATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNT 716

Query: 550 I 550
            
Sbjct: 717 F 717



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 195/418 (46%), Gaps = 68/418 (16%)

Query: 69  KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN--------------------- 107
           +L+      GQ+ D R +FD++  K+   +N +I SYVN                     
Sbjct: 70  QLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSIT 129

Query: 108 ------NYLYY----DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
                  Y  +    +A  ++++M + G+    +T   VL+ CS    +  G  IH  VV
Sbjct: 130 WSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVV 189

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN--DMPSKDVVTWNSMVAGYAQNGRFDEA 215
           K G + N+F   GLV MY KC C+ EA  +    +   K+ V W +MV GYAQNG   +A
Sbjct: 190 KNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKA 249

Query: 216 LDVCREMESLRIKPDADTMASLLPSV----------------------TNTSPENVL--- 250
           ++  R M +  ++ +  T  ++L +                       +N   ++ L   
Sbjct: 250 VEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDM 309

Query: 251 --------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
                   + K M   +++ ++VSWN ++  +  + +  EA+ L+  M    ++ +  + 
Sbjct: 310 YAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTF 369

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            SVL  C  +   +  + +H  + +   +    + NALVDMYAK G +  A TVF++M  
Sbjct: 370 PSVLNCC--VVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLE 427

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           +DV+SWTS+++ Y  +    +++ +F  M ++G+ PD     S+LSAC+   LLE G+
Sbjct: 428 KDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGK 485



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 147/319 (46%), Gaps = 47/319 (14%)

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           +++  N L+    K G + +AR++ + MP KD  +WN+M++ Y   GR  EA        
Sbjct: 64  SIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEA-------- 115

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
                                        +E+F     K+ ++W+ +I+ Y       EA
Sbjct: 116 -----------------------------RELFDGCSCKSSITWSSIISGYCKFGCKVEA 146

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
            DL+  M + G + +  ++ SVL  C  L  +  G  IH +V +   + N+ +   LVDM
Sbjct: 147 FDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDM 206

Query: 344 YAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           YAKC  ++EA  +F  +    ++ V WT+M++ Y  +G GY AV  F  M   G+  +  
Sbjct: 207 YAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQY 266

Query: 402 AFVSVLSACSH--AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
            F ++L+ACS   A    E  + F + +        +   + LVD+  + G ++ A +++
Sbjct: 267 TFPTILTACSSVLARCFGEQVHGFIVKS---GFGSNVYVQSALVDMYAKCGDLKNAKNML 323

Query: 460 KQMPMEPNERI-WGSLVAA 477
           +   ME ++ + W SL+  
Sbjct: 324 E--TMEDDDVVSWNSLMVG 340


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 191/512 (37%), Positives = 296/512 (57%), Gaps = 38/512 (7%)

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
           +R +F +I   NV  +N + R+Y  +    + + +Y  M  +G  PD Y++P VLKAC+ 
Sbjct: 80  SRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACAR 139

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS--KDVVTWN 200
            + L  G +IH S +K+G+  ++F  N L++ +  CG ++ AR V + +P+  +DVV+WN
Sbjct: 140 LSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWN 199

Query: 201 SMVAGYAQNGRFDEALDVCREM-ESLRIKPDADTMASLLPSVTN--------------TS 245
           SM++GY Q+ R++ AL V  E+     + PD  T+ S L                   T 
Sbjct: 200 SMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTG 259

Query: 246 PENVLSV-------------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
              VL V                   +++F ++ ++N V W  MIA YA + +  EA++L
Sbjct: 260 SGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIEL 319

Query: 287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
           + +M++ G   +A ++A VL ACG   AL  GR IH Y ER  ++ +L   NAL+ MY+K
Sbjct: 320 FREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSK 379

Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM-LMSGLCPDSIAFVS 405
           CG + +A  +F  +   D+ SW+++IS   M+G+   A+ LFS+M ++S + P+ I F+ 
Sbjct: 380 CGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLG 439

Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME 465
           VL AC+H G +++G YYF  MT+ Y L P IEH+ C+VDLLGRA  + EA   I+ +P++
Sbjct: 440 VLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQ 499

Query: 466 PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVR 525
           P+  IW SL+ AC  + N+++   AA  I  L P + G  VLLSN+YA A RWGDVKRVR
Sbjct: 500 PDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVR 559

Query: 526 KFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           K M ++ IKK PG S VE++  V  + +  RS
Sbjct: 560 KDMATQRIKKQPGCSFVEIDGLVHELFVADRS 591



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 159/344 (46%), Gaps = 39/344 (11%)

Query: 70  LMRTYGACGQMVDTRHVFDEITN--KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG-F 126
           L+  + +CG +   R VFD +    ++VV +N +I  Y+ ++ Y  AL V+  +   G  
Sbjct: 168 LISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSL 227

Query: 127 DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR 186
            PD  T    L  C     L +G +IH      G   ++F G+ L+ MY KCG +++AR+
Sbjct: 228 SPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARK 287

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN--- 243
           V + +P ++ V W SM+AGYAQ+  F EA+++ REM+      DA T+A +L +  +   
Sbjct: 288 VFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGA 347

Query: 244 -------------TSPENVLSVK-----------------EMFLKLDNKNLVSWNVMIAV 273
                         S E  L+ +                 E+F  L   ++ SW+ +I+ 
Sbjct: 348 LAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISG 407

Query: 274 YANNSMPAEAVDLYLQME-VHGIEPNAISVASVLPACGDLSALLLG-RKIHRYVERKKLQ 331
            A N    +A+ L+ QME +  I PN I+   VL AC     +  G    +   +   L 
Sbjct: 408 LAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLT 467

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
           P +     +VD+  +   L EA      +  Q DVV W S++ A
Sbjct: 468 PGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFA 511



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 97/174 (55%), Gaps = 1/174 (0%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y  CGQ+ D R VFD I ++N V +  +I  Y  + L+ +A+ +++ M + G
Sbjct: 268 VGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGG 327

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           F  D  T  CVL AC    +L  G  IH    +  ++ +L   N L+ MY KCG +++A 
Sbjct: 328 FAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKAL 387

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR-IKPDADTMASLL 238
            + + +   D+ +W+++++G A NG  D+AL +  +ME +  I+P+  T   +L
Sbjct: 388 EIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVL 441



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 9/162 (5%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS-VHGFDP 128
           L+  Y  CG +     +F  +T  ++  ++ +I     N     ALH++  M  +    P
Sbjct: 373 LIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRP 432

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG----NGLVAMYGKCGCLKEA 184
           +  T+  VL AC+    +  GL    ++ ++   YNL  G      +V + G+   L EA
Sbjct: 433 NEITFLGVLCACNHGGFVDKGLYYFNAMTQI---YNLTPGIEHYGCMVDLLGRANLLVEA 489

Query: 185 RRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
            + +  +P + DVV W S++     +G  + A    +++E L
Sbjct: 490 EKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEEL 531


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 192/536 (35%), Positives = 300/536 (55%), Gaps = 35/536 (6%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           L K+    ++   L  +  +G  L+  Y  C        +F+E+  K+V  +N +I  Y 
Sbjct: 124 LGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYY 183

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
            +  + +AL  +  M   GF+P+  T    + +C+    L  G++IH  ++  G   + F
Sbjct: 184 QSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSF 243

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
             + LV MYGKCG L+ A  V   MP K VV WNSM++GY   G     + + + M +  
Sbjct: 244 ISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEG 303

Query: 227 IKPDADTMASLLP-----------------SVTNTSPENVL---SVKEMFLK-------- 258
           +KP   T++SL+                  ++ N    +V    S+ +++ K        
Sbjct: 304 VKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAE 363

Query: 259 -----LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
                +    +VSWNVMI+ Y       EA+ L+ +M    +EP+AI+  SVL AC  L+
Sbjct: 364 NIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLA 423

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           AL  G +IH  +  KKL  N  +  AL+DMYAKCG++ EA +VF  +  +D+VSWTSMI+
Sbjct: 424 ALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMIT 483

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
           AYG  GQ Y A+ LF++ML S + PD + F+++LSAC HAGL++EG YYF  M   Y ++
Sbjct: 484 AYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGII 543

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMP-MEPNERIWGSLVAACCLYSNMDIGILAAD 492
           PR+EH++CL+DLLGRAG++ EAY++++Q P +  +  +  +L +AC L+ N+D+G   A 
Sbjct: 544 PRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIAR 603

Query: 493 HIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
            +    P+ S  Y+LLSN+YA A +W +V+ VR  M   G+KK PG S +E+N ++
Sbjct: 604 TLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKI 659



 Score =  228 bits (581), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 142/470 (30%), Positives = 243/470 (51%), Gaps = 39/470 (8%)

Query: 45  KTLK--KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFFNVL 101
           K+LK  KL  Q ++   L ++  +   L+  Y +C      + VFD + N   +  +N L
Sbjct: 17  KSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPCEISLWNGL 76

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGF-DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           +  Y  NY+Y +AL +++ +  + +  PD YTYP VLKAC G    ++G  IH  +VK G
Sbjct: 77  MAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTG 136

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
           L  ++  G+ LV MY KC   ++A  + N+MP KDV  WN++++ Y Q+G F EAL+   
Sbjct: 137 LMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFG 196

Query: 221 EMESLRIKPDADTMAS--------------------------LLPSVTNTSPENVLS--- 251
            M     +P++ T+ +                          LL S  +++  ++     
Sbjct: 197 LMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCG 256

Query: 252 ----VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                 E+F ++  K +V+WN MI+ Y         + L+ +M   G++P   +++S++ 
Sbjct: 257 HLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIM 316

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
            C   + LL G+ +H Y  R ++Q ++ + ++L+D+Y KCG +  A  +F  +    VVS
Sbjct: 317 VCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVS 376

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W  MIS Y   G+ ++A+ LFS+M  S + PD+I F SVL+ACS    LE+G     ++ 
Sbjct: 377 WNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLII 436

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           E+ KL         L+D+  + G V+EA+ + K +P + +   W S++ A
Sbjct: 437 EK-KLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KRDLVSWTSMITA 484



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 175/367 (47%), Gaps = 44/367 (11%)

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK- 194
           +L+AC  S SL  G  IH  VV +GL  ++F    L+ +Y  C     A+ V ++M +  
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPC 68

Query: 195 DVVTWNSMVAGYAQNGRFDEALDVCREMESL-RIKPDADTMASLLPS------------- 240
           ++  WN ++AGY +N  + EAL++  ++     +KPD+ T  S+L +             
Sbjct: 69  EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMI 128

Query: 241 -------------VTNTSPENVLSVKEMFLK-------LDNKNLVSWNVMIAVYANNSMP 280
                        V  +S   + +    F K       +  K++  WN +I+ Y  +   
Sbjct: 129 HTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNF 188

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            EA++ +  M   G EPN++++ + + +C  L  L  G +IH  +       +  + +AL
Sbjct: 189 KEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSAL 248

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           VDMY KCG L  A  VF+QM  + VV+W SMIS YG+ G     + LF +M   G+ P  
Sbjct: 249 VDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTL 308

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH----FACLVDLLGRAGKVEEAY 456
               S++  CS +  L EG++        Y +  RI+      + L+DL  + GKVE A 
Sbjct: 309 TTLSSLIMVCSRSARLLEGKF-----VHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAE 363

Query: 457 DLIKQMP 463
           ++ K +P
Sbjct: 364 NIFKLIP 370



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 8/182 (4%)

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR--C 362
           +L AC +  +L  G+ IH+ V    LQ ++ L   L+++Y  C     A+ VFD M   C
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPC 68

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKML-MSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
           + +  W  +++ Y  +    +A+ LF K+L    L PDS  + SVL AC        G+ 
Sbjct: 69  E-ISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKM 127

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
               + +   L+  I   + LV +  +    E+A  L  +MP E +   W ++++  C Y
Sbjct: 128 IHTCLVKT-GLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMP-EKDVACWNTVIS--CYY 183

Query: 482 SN 483
            +
Sbjct: 184 QS 185


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 208/589 (35%), Positives = 308/589 (52%), Gaps = 86/589 (14%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC +I      ++  +  HA  ++   + SN  +G  L+  Y  C  + D R VFDE++ 
Sbjct: 136 ACGEI----SSVRCGESAHALSLVTGFI-SNVFVGNALVAMYSRCRSLSDARKVFDEMSV 190

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQ 151
            +VV +N +I SY        AL ++  M+   G  PD  T   VL  C+   +  +G Q
Sbjct: 191 WDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQ 250

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +HC  V   +  N+F GN LV MY KCG + EA  V ++M  KDVV+WN+MVAGY+Q GR
Sbjct: 251 LHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGR 310

Query: 212 FD-----------------------------------EALDVCREMESLRIKPDADTMAS 236
           F+                                   EAL VCR+M S  IKP+  T+ S
Sbjct: 311 FEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLIS 370

Query: 237 LLPSVTNTSP-------------------------ENVL---------------SVKEMF 256
           +L    +                            EN++               + + MF
Sbjct: 371 VLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMF 430

Query: 257 --LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM--EVHGIEPNAISVASVLPACGDL 312
             L    +++V+W VMI  Y+ +    +A++L  +M  E     PNA +++  L AC  L
Sbjct: 431 DSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASL 490

Query: 313 SALLLGRKIHRYVERKKLQP-NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           +AL +G++IH Y  R +     L + N L+DMYAKCGS+++AR VFD M  ++ V+WTS+
Sbjct: 491 AALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSL 550

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           ++ YGM G G +A+ +F +M   G   D +  + VL ACSH+G++++G  YF  M   + 
Sbjct: 551 MTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFG 610

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
           + P  EH+ACLVDLLGRAG++  A  LI++MPMEP   +W + ++ C ++  +++G  AA
Sbjct: 611 VSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAA 670

Query: 492 DHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           + I  LA N  G Y LLSN+YA AGRW DV R+R  M  KG+KK PG S
Sbjct: 671 EKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCS 719



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 147/526 (27%), Positives = 231/526 (43%), Gaps = 95/526 (18%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKL----MRTYGACGQMVDTRHVFDEI--TNKNV 95
           P I   K +    +I+Q L S   + L L    + TY + G +     +      ++  V
Sbjct: 33  PFIHKCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGV 92

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
             +N LIRSY +N      L+++  M    + PD YT+P V KAC   +S+  G   H  
Sbjct: 93  YHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHAL 152

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
            +  G   N+F GN LVAMY +C  L +AR+V ++M   DVV+WNS++  YA+ G+   A
Sbjct: 153 SLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVA 212

Query: 216 LDVCREMES-LRIKPDADTMASLLP-----------------SVTNTSPENVL------- 250
           L++   M +    +PD  T+ ++LP                 +VT+   +N+        
Sbjct: 213 LEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVD 272

Query: 251 ---------SVKEMFLKLDNKNLVSWNVMIA----------------------------- 272
                        +F  +  K++VSWN M+A                             
Sbjct: 273 MYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVT 332

Query: 273 ------VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
                  YA   +  EA+ +  QM   GI+PN +++ SVL  C  + AL+ G++IH Y  
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAI 392

Query: 327 RKKLQPNLR---------LENALVDMYAKCGSLTEARTVFDQM--RCQDVVSWTSMISAY 375
           +  +  +LR         + N L+DMYAKC  +  AR +FD +  + +DVV+WT MI  Y
Sbjct: 393 KYPI--DLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGY 450

Query: 376 GMSGQGYDAVALFSKMLMSGLC---PDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYK 431
              G    A+ L S+M     C   P++      L AC+    L  G+  +   +  Q  
Sbjct: 451 SQHGDANKALELLSEMFEED-CQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQN 509

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            VP      CL+D+  + G + +A  +   M M  NE  W SL+  
Sbjct: 510 AVPLFVS-NCLIDMYAKCGSISDARLVFDNM-MAKNEVTWTSLMTG 553


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 205/592 (34%), Positives = 311/592 (52%), Gaps = 89/592 (15%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC +I    P  +    +HA ++       N  +G  L+  YG CG   + R VFDE+  
Sbjct: 135 ACGEI----PSFRCGASVHA-VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRE 189

Query: 93  KNV---VFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLV 148
           + V   V +N ++ +Y+       A+ +++ M+   G  PD  +   VL AC+   +   
Sbjct: 190 RGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSR 249

Query: 149 GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
           G Q+H   ++ GL  ++F GN +V MY KCG ++EA +V   M  KDVV+WN+MV GY+Q
Sbjct: 250 GKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQ 309

Query: 209 NGRFD-----------------------------------EALDVCREMESLRIKPDADT 233
            GRFD                                   EALDV R+M     +P+  T
Sbjct: 310 IGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVT 369

Query: 234 MASLLP-----------------------SVTNTSPENVLSV-----------------K 253
           + SLL                        ++    P + L V                 +
Sbjct: 370 LVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAAR 429

Query: 254 EMF--LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM--EVHGIEPNAISVASVLPAC 309
            MF  +   ++++V+W V+I   A +    EA++L+ QM    + + PNA +++  L AC
Sbjct: 430 AMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMAC 489

Query: 310 GDLSALLLGRKIHRYVERKKLQPN-LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
             L AL  GR+IH YV R + +   L + N L+DMY+K G +  AR VFD M  ++ VSW
Sbjct: 490 ARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSW 549

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
           TS+++ YGM G+G +A+ +F +M   GL PD + FV VL ACSH+G++++G  YF  M +
Sbjct: 550 TSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNK 609

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
            + +VP  EH+AC+VDLL RAG+++EA +LI+ MPM+P   +W +L++AC +Y+N+++G 
Sbjct: 610 DFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGE 669

Query: 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            AA+ +  L     G Y LLSNIYA A  W DV R+R  M + GIKK PG S
Sbjct: 670 YAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCS 721



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 153/555 (27%), Positives = 251/555 (45%), Gaps = 100/555 (18%)

Query: 15  KPVQALVLSTQYTLLSGDACNDI----LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKL 70
           KP   L+  T +   +  +  D+      +   + + + +H Q+++ Q L  +P+  + +
Sbjct: 9   KPKPPLLFLTTFFFSTASSTTDLTSTLFHQCKSLASAELIHQQLLV-QGLPHDPTHIISM 67

Query: 71  MRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDC 130
             T+ +  + +         ++  V ++N LIR  V+     D L +Y+ M   G+ PD 
Sbjct: 68  YLTFNSPAKALSVLRRLHP-SSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDH 126

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
           YT+P VLKAC    S   G  +H  V   G ++N+F GNGLV+MYG+CG  + AR+V ++
Sbjct: 127 YTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDE 186

Query: 191 MPSK---DVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPDADTMASLLPSVTNTSP 246
           M  +   D+V+WNS+VA Y Q G    A+ +   M E L I+PDA ++ ++LP+  +   
Sbjct: 187 MRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGA 246

Query: 247 -----------------ENVL----------------SVKEMFLKLDNKNLVSWNVM--- 270
                            E+V                    ++F ++  K++VSWN M   
Sbjct: 247 WSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTG 306

Query: 271 --------------------------------IAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                                           IA YA   +  EA+D++ QM + G EPN
Sbjct: 307 YSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPN 366

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQ-------PNLRLENALVDMYAKCGSLT 351
            +++ S+L  C     LL G++ H +  +  L         +L + NAL+DMY+KC S  
Sbjct: 367 VVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPK 426

Query: 352 EARTVFDQMRCQD--VVSWTSMISAYGMSGQGYDAVALFSKMLMSG--LCPDSIAFVSVL 407
            AR +FD +  +D  VV+WT +I      G+  +A+ LFS+ML     + P++      L
Sbjct: 427 AARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCAL 486

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA-----CLVDLLGRAGKVEEAYDLIKQM 462
            AC+  G L  GR         Y L  R E        CL+D+  ++G V+ A  +   M
Sbjct: 487 MACARLGALRFGR-----QIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM 541

Query: 463 PMEPNERIWGSLVAA 477
             + N   W SL+  
Sbjct: 542 -HQRNGVSWTSLMTG 555


>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
 gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
          Length = 616

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 188/534 (35%), Positives = 299/534 (55%), Gaps = 41/534 (7%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           A  ++L    ++   KK+H  ++ N + + N  +G  L++ Y  CG + D + VFD +  
Sbjct: 72  AYGNLLRDCGELAAGKKIHEHVVKNGY-YENVYVGNHLVQMYSKCGSLEDAKKVFDGMRR 130

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACS--GSNSLLVGL 150
           ++ + ++ +I  YV + L  +A+ +YK M++   DPD +T+  VL ACS  G  +L VG 
Sbjct: 131 RDSISWSKMIAGYVRHGLAREAIKLYKAMAI---DPDGFTFSAVLNACSSLGPRALEVGK 187

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
           +IH  + ++ L  ++F  + LV M+ KCG LKE+R V +D   KDV+ WNSM+  Y+Q+G
Sbjct: 188 EIHAHMKRIWLKPDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSG 247

Query: 211 RFDEALDVCREMESLR--IKPDADTMASLLPSVT----------------------NTSP 246
              EA+++ + M S    ++P+A T  ++L + +                      + + 
Sbjct: 248 HPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDAAA 307

Query: 247 ENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
           EN L             +E+F  +  + +VSW  +I+ Y     P EA+DLY +M   G+
Sbjct: 308 ENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGV 367

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
           EPN I+ ASVL AC  L AL  G+ +H  ++    +P+L + NALV +Y KCGS+  AR 
Sbjct: 368 EPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARK 427

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           VFD+M+ ++VVSWT+MISAY       +A+ L+  M + G+   S  + +VL+ACS AGL
Sbjct: 428 VFDRMKIRNVVSWTAMISAYAHHRHSEEAIQLYKAMDLEGVQASSFIYGTVLTACSQAGL 487

Query: 416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
           LE  R+YF  +T       ++E + C+  +LGRAG++ EA +L+  MP E     W  L+
Sbjct: 488 LESARHYFGCLTRDCGAPAKLEDYVCMATVLGRAGRLAEAEELLAVMPFEAEFVAWMGLL 547

Query: 476 AACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529
           AAC  +++++ G   A+ +F L P     YVLLSNIY  AGR  +  RVR+ M 
Sbjct: 548 AACKAHNDVERGARVAEVLFRLEPLNEAPYVLLSNIYVAAGRQEEAARVRRKMG 601



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 171/366 (46%), Gaps = 23/366 (6%)

Query: 2   KAVVLLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLH 61
           +A+ L     S++ PV+   + T  T+L+  AC+ +     D++  K++H Q++ +    
Sbjct: 251 EAIELFKSMGSSSPPVEPNAI-TYTTVLA--ACSAV----EDLEQGKEVHRQMV-DAGFQ 302

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
            + +    L+  Y  CG + + R VFD +  + VV +  +I +YV      +AL +Y+ M
Sbjct: 303 FDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKM 362

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              G +P+  T+  VL ACS   +L  G  +H  +   G   +L   N LV++YGKCG +
Sbjct: 363 GSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSV 422

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
             AR+V + M  ++VV+W +M++ YA +   +EA+ + + M+   ++  +    ++L   
Sbjct: 423 DSARKVFDRMKIRNVVSWTAMISAYAHHRHSEEAIQLYKAMDLEGVQASSFIYGTVL--- 479

Query: 242 TNTSPENVLSVKEMFLKLDNKN------LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
           T  S   +L     +     ++      L  +  M  V       AEA +L   + V   
Sbjct: 480 TACSQAGLLESARHYFGCLTRDCGAPAKLEDYVCMATVLGRAGRLAEAEEL---LAVMPF 536

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP-NLRLENALVDMYAKCGSLTEAR 354
           E   ++   +L AC   + +  G ++   + R  L+P N      L ++Y   G   EA 
Sbjct: 537 EAEFVAWMGLLAACKAHNDVERGARVAEVLFR--LEPLNEAPYVLLSNIYVAAGRQEEAA 594

Query: 355 TVFDQM 360
            V  +M
Sbjct: 595 RVRRKM 600



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 139/308 (45%), Gaps = 56/308 (18%)

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
             +++P    +  + ++ H  E  A +  ++L  CG+L+A   G+KIH +V +     N+
Sbjct: 46  GKSALPGGLDNALVWIDSHQQEDCAPAYGNLLRDCGELAA---GKKIHEHVVKNGYYENV 102

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + N LV MY+KCGSL +A+ VFD MR +D +SW+ MI+ Y   G   +A+ L+  M + 
Sbjct: 103 YVGNHLVQMYSKCGSLEDAKKVFDGMRRRDSISWSKMIAGYVRHGLAREAIKLYKAMAID 162

Query: 395 GLCPDSIAFVSVLSACSHAG--LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
              PD   F +VL+ACS  G   LE G+     M   + L P +   + LV +  + G +
Sbjct: 163 ---PDGFTFSAVLNACSSLGPRALEVGKEIHAHMKRIW-LKPDVFVDSALVTMFAKCGSL 218

Query: 453 E-------------------------------EAYDLIKQM-----PMEPNERIWGSLVA 476
           +                               EA +L K M     P+EPN   + +++A
Sbjct: 219 KESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLA 278

Query: 477 ACCLYSNMDIG------ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530
           AC    +++ G      ++ A   F  A   S     L N+YAK G   + + V   M  
Sbjct: 279 ACSAVEDLEQGKEVHRQMVDAGFQFDAAAENS-----LVNMYAKCGSITEAREVFDGMKQ 333

Query: 531 KGIKKMPG 538
           + +    G
Sbjct: 334 RTVVSWTG 341


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 196/534 (36%), Positives = 292/534 (54%), Gaps = 51/534 (9%)

Query: 26  YTLLSG-DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR 84
           Y+  SG  AC+    +  D+K   ++H  +I       +  +G  L+  Y  CG +   R
Sbjct: 157 YSFGSGLSACS----RLKDLKLGAQIHG-LISKSKYSLDVFMGSGLIDFYSKCGLVGCAR 211

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
            VFD +  KNVV +N LI  Y  N    +AL  +  M+  GF PD  T   V+ AC+   
Sbjct: 212 RVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLA 271

Query: 145 SLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
           +   G+QIH  VVK      +L  GN LV MY KCG + EAR V + MP ++ V+  +MV
Sbjct: 272 AFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMV 331

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKN 263
           +GYA++                                      +V + + MF  +  K+
Sbjct: 332 SGYAKSA-------------------------------------SVKAARSMFATIKQKD 354

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR 323
           +VSWN +IA Y  N    EA+ L+  ++   + P   +  ++L A  +L+ L LGR+ H 
Sbjct: 355 IVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHS 414

Query: 324 YVERKKL------QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           +V +         +P++ + N+L+DMY KCGS+ E   VF+ M  +D VSW +MI  Y  
Sbjct: 415 HVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQ 474

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
           +G G +A+ LF KML SG  PD +  +  L ACSHAGL+EEGR YF  MT+++ L+P  +
Sbjct: 475 NGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKD 534

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHL 497
           H+ C+VDLLGRAG +EEA DLI+ MP +P+  +W SL++AC ++ N+ +G   A+ IF +
Sbjct: 535 HYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEI 594

Query: 498 APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            P  SG YVLL+N+Y++ GRWGD   VRK M  +G+ K PG S +++   V + 
Sbjct: 595 DPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSNVHVF 648



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 155/339 (45%), Gaps = 37/339 (10%)

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           F  D   +  +L  C    S      +H  +++      +F  N L+ +YGKCG L  AR
Sbjct: 20  FFTDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYAR 79

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           +V + M  ++V ++NS+++   + G  DE+                  + SL+P      
Sbjct: 80  KVFDRMSERNVFSFNSIISTLMRWGFVDESA----------------WLFSLMP------ 117

Query: 246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                           K+  SWN MIA +A +    EA+D +++M       N  S  S 
Sbjct: 118 ---------------EKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSG 162

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L AC  L  L LG +IH  + + K   ++ + + L+D Y+KCG +  AR VFD M  ++V
Sbjct: 163 LSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNV 222

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           VSW  +I+ Y  +G   +A+  F +M   G  PD +   SV+SAC+     +EG      
Sbjct: 223 VSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHAR 282

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM 464
           + +  K    +     LVD+  + G+V EA  +  +MP+
Sbjct: 283 VVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPV 321


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 183/518 (35%), Positives = 284/518 (54%), Gaps = 67/518 (12%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +N +I SY       +AL+VY  +    F+ D +  P VLKAC   +   +G +IH  V+
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           K GLD ++F GN L+ MYG+C C++ AR V + M  +DVV+W++M+   ++N  FD AL+
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTS-----------------------PENVLSV-- 252
           + REM  ++++P    M S++    +T+                       P     +  
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDM 271

Query: 253 ----------KEMFLKLDNKNLVSWNVMIA------------------------------ 272
                     +++F  L  K +VSW  MIA                              
Sbjct: 272 YAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAML 331

Query: 273 -VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
             YA  +   +A +L+ QM   G+ P  +++ S+L  C    AL LG+ +H Y+++++++
Sbjct: 332 SAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVE 391

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            +  L  ALVDMYAKCG +  A  +F +   +D+  W ++I+ + M G G +A+ +F++M
Sbjct: 392 VDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEM 451

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
              G+ P+ I F+ +L ACSHAGL+ EG+  F+ M   + LVP+IEH+ C+VDLLGRAG 
Sbjct: 452 ERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGL 511

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
           ++EA+++IK MP++PN  +WG+LVAAC L+ N  +G LAA  +  + P   GY VL+SNI
Sbjct: 512 LDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNI 571

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPGASV-EMNDQVQ 548
           YA A RW D   VRK M + G+KK PG SV E+N  V 
Sbjct: 572 YAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVH 609



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 154/351 (43%), Gaps = 43/351 (12%)

Query: 79  QMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLK 138
           ++ + R +FD   N++V+ +  ++ +Y        A +++  M   G  P   T   +L 
Sbjct: 308 RLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLS 367

Query: 139 ACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVT 198
            C+ + +L +G  +H  + K  ++ +      LV MY KCG +  A R+  +  S+D+  
Sbjct: 368 LCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICM 427

Query: 199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLK 258
           WN+++ G+A +G  +EALD+  EME   +KP+  T   LL + ++     V   K++F K
Sbjct: 428 WNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGL--VTEGKKLFEK 485

Query: 259 LDNK-----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC---- 309
           + +       +  +  M+ +     +  EA ++   M    I+PN I   +++ AC    
Sbjct: 486 MVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMP---IKPNTIVWGALVAACRLHK 542

Query: 310 ----GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--- 362
               G+L+A  L       +E +    N+ + N    +YA     ++A  V   M+    
Sbjct: 543 NPQLGELAATQLLE-----IEPENCGYNVLMSN----IYAAANRWSDAAGVRKTMKTVGM 593

Query: 363 -----QDVVSWTSMISAYGMSGQGYDAVALFSKMLM--------SGLCPDS 400
                  V+     +  + M  Q +  +   ++ML         +G  PD+
Sbjct: 594 KKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDT 644


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 195/528 (36%), Positives = 295/528 (55%), Gaps = 19/528 (3%)

Query: 23  STQYTLLSGDACNDILDKY--PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACG-- 78
           ST+ + LS  A   +L+      +  LK+ HA I+   HL  +  I   L+++Y      
Sbjct: 24  STETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQ-DSYIAGSLVKSYANVSTN 82

Query: 79  ---QMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC 135
                  +  VFD +   NV  +N +I+  + N   + A+ +Y  M V  F P+ YTYP 
Sbjct: 83  RYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPA 142

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK- 194
           VLKACS +  +  G+Q+H  +VK GL  +    +  + MY   G L EARR+L+D   + 
Sbjct: 143 VLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEV 202

Query: 195 DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSV-K 253
           D V WN+M+ GY + G  + A ++   M      PD   +++    ++  S   ++ V +
Sbjct: 203 DAVCWNAMIDGYLRFGEVEAARELFEGM------PDRSMISTWNAMISGFSRCGMVEVAR 256

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           E F ++  ++ +SW+ MI  Y       EA++++ QM+   I P    + SVL AC +L 
Sbjct: 257 EFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLG 316

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           AL  GR IH Y +R  +Q +  L  +LVDMYAKCG +  A  VF++M  ++V SW +MI 
Sbjct: 317 ALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIG 376

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
              M G+  DA+ LFSKM ++   P+ I FV VL+AC+H GL+++G   F  M ++Y + 
Sbjct: 377 GLAMHGRAEDAIDLFSKMDIN---PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVE 433

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P+IEH+ C+VDLLGRAG + EA  ++  +P EP   +WG+L+ AC  + N+++G      
Sbjct: 434 PQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKI 493

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           +  L P  SG Y LLSNIYAKAGRW +V  VRK M  +GIK  PG S+
Sbjct: 494 LLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSI 541


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 203/599 (33%), Positives = 321/599 (53%), Gaps = 70/599 (11%)

Query: 20  LVLSTQYTLLSGDACNDILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLKLMRTYGA 76
           LV   Q + L       +L     +K+L   KK+H+ II +  +  + ++GLKL+  Y  
Sbjct: 88  LVCMCQKSELETKTYGSVLQLCAGLKSLTDGKKVHS-IIKSNSVGVDEALGLKLVSFYAT 146

Query: 77  CGQMVDTRHVFDEITNKNV----------------------------------------- 95
           CG + + R VFD +  KNV                                         
Sbjct: 147 CGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASE 206

Query: 96  ----------VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
                     + +N +I  YV+N L    L +YK M   G D D  T   VL  C+ S +
Sbjct: 207 LFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGT 266

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           L +G  +H   +K   +  +   N L+ MY KCG L  A RV   M  ++VV+W SM+AG
Sbjct: 267 LSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 326

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT-SPENVLSVKEMFLKLDN--K 262
           Y ++G  D A+ + ++ME   +K D   + S+L +   + S +N   V + ++K +N   
Sbjct: 327 YTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD-YIKANNMAS 385

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI----------EPNAISVASVLPACGDL 312
           NL   N ++ +YA       A  ++  M V  I          +P++ ++A +LPAC  L
Sbjct: 386 NLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASL 445

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
           SAL  G++IH Y+ R     +  + NALVD+Y KCG L  AR +FD +  +D+VSWT MI
Sbjct: 446 SALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMI 505

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           + YGM G G +A+A F++M  +G+ PD ++F+S+L ACSH+GLLE+G  +F IM   + +
Sbjct: 506 AGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNI 565

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAAD 492
            P++EH+AC+VDLL R G + +AY  I+ +P+ P+  IWG+L+  C +Y ++++    A+
Sbjct: 566 EPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAE 625

Query: 493 HIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            +F L P  +GYYVLL+NIYA+A +  +VKR+R+ +  KG++K PG S +E+  +V + 
Sbjct: 626 RVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLF 684



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 107/244 (43%), Gaps = 18/244 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H  I+ N +  S+  +   L+  Y  CG +   R +FD I +K++V + V+I  Y  
Sbjct: 452 KEIHGYILRNGY-SSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGM 510

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK--VGLDYNL 165
           +    +A+  +  M   G +PD  ++  +L ACS S  L  G +    ++K    ++  L
Sbjct: 511 HGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMKNDFNIEPKL 569

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
            +   +V +  + G L +A + +  +P + D   W +++ G       + A  V   +  
Sbjct: 570 EHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERV-- 627

Query: 225 LRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL-----VSW-----NVMIAVY 274
             ++P+      LL ++     E    VK M  K+  K L      SW      V + V 
Sbjct: 628 FELEPENTGYYVLLANIY-AEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVS 686

Query: 275 ANNS 278
            NNS
Sbjct: 687 GNNS 690


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 190/561 (33%), Positives = 309/561 (55%), Gaps = 45/561 (8%)

Query: 24  TQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT 83
           ++  LL    C+  L K  ++ ++ ++HAQ++   +LH +  +  KL+  +  C  +   
Sbjct: 16  SRQRLLEEKLCD--LHKCSNLDSVNQIHAQVL-KANLHQDLFVAPKLIAAFSLCRHLASA 72

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYD-ALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
            +VF+ + + NV  +N +IR++ +N  +     + +  M  +G  PD +TYP +LKAC+G
Sbjct: 73  VNVFNHVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTG 132

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC---------------------- 180
            +SL +   IH  V K G   ++F  N L+  Y +CG                       
Sbjct: 133 PSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWN 192

Query: 181 -----------LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
                      L+ A ++ ++MP +D+V+WN+M+ GYA+ G  D A ++   M    I  
Sbjct: 193 SMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIV- 251

Query: 230 DADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
              + ++++   +     ++  V  +F +   KN+V W  +IA YA      EA +LY +
Sbjct: 252 ---SWSTMVCGYSKGGDMDMARV--LFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGK 306

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           ME  G+ P+   + S+L AC +   L LG++IH  + R + +   ++ NA +DMYAKCG 
Sbjct: 307 MEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGC 366

Query: 350 LTEARTVFDQMRC-QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
           L  A  VF  M   +DVVSW SMI  + M G G  A+ LFS+M+  G  PD+  FV +L 
Sbjct: 367 LDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLC 426

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
           AC+HAGL+ EGR YF  M + Y +VP++EH+ C++DLLGR G ++EA+ L++ MPMEPN 
Sbjct: 427 ACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNA 486

Query: 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVR-KF 527
            I G+L+ AC +++++D      + +F + P   G Y LLSNIYA+AG W +V  VR + 
Sbjct: 487 IILGTLLNACRMHNDVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQAGDWMNVANVRLQM 546

Query: 528 MNSKGIKKMPGASVEMNDQVQ 548
           MN+ G K    +S+E+ ++V 
Sbjct: 547 MNTGGQKPSGASSIEVEEEVH 567


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 180/508 (35%), Positives = 291/508 (57%), Gaps = 30/508 (5%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLM-----RTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           LK++H++ I    +  NP I  K++     R +G    M   R +FD I   +V  +N++
Sbjct: 30  LKQIHSRTI-KTGIICNPIIQNKILSFCCSREFG---DMCYARQLFDTIPEPSVFSWNIM 85

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
            + Y         + +Y  M      PDCYTYP + K  + S +L +G ++HC VVK GL
Sbjct: 86  FKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGL 145

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           D N+F  N L+ MY  CG +  AR + +     DVVTWN+M++GY               
Sbjct: 146 DSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYN-------------- 191

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
               RIK D  +  +++    NT    V + ++ F K+  ++ VSW  MI  Y   +   
Sbjct: 192 ----RIKKDVISWTAIVTGFVNTG--QVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYK 245

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
           EA+ L+ +M+   I+P+  ++ SVL AC  L AL LG  I  Y+++ K++ +  + NAL+
Sbjct: 246 EALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALI 305

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           DMY KCG++  A ++F+ +  +D  +WT+M+    ++G G +A+ +FS+ML + + PD +
Sbjct: 306 DMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEV 365

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
            +V VLSAC+H G+++EG+ +F  MT ++ + P I H+ C+VDLLG+AG ++EA+++IK 
Sbjct: 366 TYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKN 425

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
           MPM+PN  +WG+L+ AC ++ + ++   A + I  L PN    YVL  NIYA   +W  +
Sbjct: 426 MPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKL 485

Query: 522 KRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           + +R+ M  +GIKK PG S +EMN  V 
Sbjct: 486 RELRQVMMDRGIKKTPGCSLIEMNGIVH 513


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 175/473 (36%), Positives = 278/473 (58%), Gaps = 38/473 (8%)

Query: 76  ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC 135
           +CG +   R +FD+   +++V +N +I  YV     Y+AL+ Y+ M V G  PD  T   
Sbjct: 154 SCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIG 213

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
           V+ +C+    L +G + HC + + GL   +   N L+ MY KCG L+ AR++ + M +K 
Sbjct: 214 VVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKT 273

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM 255
           +V+W +MV GYAQ+G  D A  +  EM      PD                         
Sbjct: 274 MVSWTTMVVGYAQSGLLDMAWKLFDEM------PD------------------------- 302

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
                 K++V WN MI  Y + +   EA+ L+ +M+   I P+ +++ S L AC  L AL
Sbjct: 303 ------KDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGAL 356

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
            +G  IH Y+E+ +L  N+ L  AL+DMYAKCG +T+A  VF ++  ++ ++WT++IS  
Sbjct: 357 DVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGL 416

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
            + G  + A+A FS+M+ + + PD + F+ +LSAC H GL+EEGR YF  M+ ++ L P+
Sbjct: 417 ALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPK 476

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
           ++H++C+VDLLGRAG +EEA +LIK MP+E +  +WG+L  AC ++ N+ +G  AA  + 
Sbjct: 477 LKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLL 536

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
            + P+ SG YVLL+N+Y +A  W +  + RK M  +G++K PG +S+E+N  V
Sbjct: 537 QMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIV 589



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 121/252 (48%), Gaps = 10/252 (3%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y   G +     +FDE+ +K+VV +N +I  YV+     +AL ++  M     +PD  T 
Sbjct: 284 YAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTM 343

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
              L ACS   +L VG+ IH  + K  L  N+  G  L+ MY KCG + +A +V  ++P 
Sbjct: 344 VSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPG 403

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK 253
           ++ +TW ++++G A +G    A+    EM    + PD  T   LL +  +     V   +
Sbjct: 404 RNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGL--VEEGR 461

Query: 254 EMFLKLDNK-----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           + F ++ +K      L  ++ M+ +     +  EA +L   M    IE +A+   ++  A
Sbjct: 462 KYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMP---IEADAVVWGALFFA 518

Query: 309 CGDLSALLLGRK 320
           C     +L+G +
Sbjct: 519 CRIHGNVLMGER 530


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 201/598 (33%), Positives = 316/598 (52%), Gaps = 78/598 (13%)

Query: 26  YTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH 85
           Y LL      ++L K PDI +LK++H+ +II   LH+      KL+  + A     D  +
Sbjct: 20  YKLLENHPHLNLLAKCPDIPSLKQIHS-LIIKSGLHNTLFAQSKLIE-FCALSPSRDLSY 77

Query: 86  ---VFDEITNK--NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC 140
              +F  I ++  N+  +N LIR++        +LH++  M   G  P+ +T+P + K+C
Sbjct: 78  ALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSC 137

Query: 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK------------------ 182
           + S +     Q+H   +K+ L  +      L+ MY + G L+                  
Sbjct: 138 AKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFT 197

Query: 183 -------------EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
                        +ARR+ +++P+KDVV+WN+M+AGY Q+GRF+EAL     M+   + P
Sbjct: 198 ALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSP 257

Query: 230 DADTMASLLPSV----------------------TNTSPENVL-----------SVKEMF 256
           +  TM S+L +                        N    N L           + +++F
Sbjct: 258 NQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLF 317

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
             +++K+++ WN MI  Y + S+  EA+ L+  M    + PN ++  +VLPAC  L AL 
Sbjct: 318 DGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALD 377

Query: 317 LGRKIHRYVERKKLQP-----NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           LG+ +H Y++ K L+      N+ L  +++ MYAKCG +  A  VF  M  + + SW +M
Sbjct: 378 LGKWVHAYID-KNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAM 436

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           IS   M+G    A+ LF +M+  G  PD I FV VLSAC+ AG +E G  YF  M + Y 
Sbjct: 437 ISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYG 496

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
           + P+++H+ C++DLL R+GK +EA  L+  M MEP+  IWGSL+ AC ++  ++ G   A
Sbjct: 497 ISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVA 556

Query: 492 DHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           + +F L P  SG YVLLSNIYA AGRW DV ++R  +N KG+KK+PG  S+E++  V 
Sbjct: 557 ERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVH 614


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 179/536 (33%), Positives = 305/536 (56%), Gaps = 35/536 (6%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +LH  I ++  L  +  +   L+  Y  C  +   R +FD     ++V +N +I  YV N
Sbjct: 180 QLHG-IAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQN 238

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
            L  +A H+++ M   G  PD  T+   L   +   SL    +IH  +++  +  ++F  
Sbjct: 239 GLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLK 298

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           + L+ +Y KC  ++ A+++L    S D V   +M++GY  NG+  EAL+  R +   R+K
Sbjct: 299 SALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMK 358

Query: 229 PDADTMASLLPSVTNTSPEN--------VLSVK-------------------------EM 255
           P + T +S+ P+    +  N        ++  K                          +
Sbjct: 359 PTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRV 418

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F ++  K+ + WN MI   + N  P EA++L+ QM + G   + +S++  L AC +L AL
Sbjct: 419 FNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPAL 478

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             G++IH  + +  L+ +L  E++L+DMYAKCG+L  +R VFD+M+ ++ VSW S+ISAY
Sbjct: 479 HYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAY 538

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
           G  G   + +ALF +ML +G+ PD + F+ ++SAC HAG ++EG  Y+ +MTE+Y +  R
Sbjct: 539 GNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPAR 598

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
           +EH+AC+ D+ GRAG+++EA++ I  MP  P+  +WG+L+ AC ++ N+++  +A+ H+F
Sbjct: 599 MEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLF 658

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            L P  SGYYVLL+N+ A AG+W  V +VR  M  +G++K+PG S +E+N+   + 
Sbjct: 659 DLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATHMF 714



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/450 (29%), Positives = 227/450 (50%), Gaps = 45/450 (10%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L++ Y   G + D +++FD I  K+ V +NV++  YV N    +A+ ++  M    
Sbjct: 95  VGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSE 154

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             P+  T+ CVL  C+    L +G Q+H   V  GL+ +    N L+AMY KC CL+ AR
Sbjct: 155 IKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAAR 214

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           ++ +  P  D+V+WN +++GY QNG   EA  + R M S  IKPD+ T AS LP V    
Sbjct: 215 KLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVN--- 271

Query: 246 PENVLSVK----------------EMFLK----------------------LDNKNLVSW 267
              +LS+K                ++FLK                        + + V  
Sbjct: 272 --ELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVC 329

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
             MI+ Y  N    EA++ +  +    ++P +++ +S+ PA   L+AL LG+++H  + +
Sbjct: 330 TTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIK 389

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
            KL     + +A++DMYAKCG L  A  VF+++  +D + W SMI++   +G+  +A+ L
Sbjct: 390 TKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINL 449

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           F +M M G   D ++    LSAC++   L  G+    +M +   L   +   + L+D+  
Sbjct: 450 FRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKG-PLRSDLYAESSLIDMYA 508

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           + G +  +  +  +M  E NE  W S+++A
Sbjct: 509 KCGNLNFSRRVFDRM-QERNEVSWNSIISA 537



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 216/438 (49%), Gaps = 35/438 (7%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y   G + D +++F  +       +N +IR +     +  AL  Y  M   G  PD YT+
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
           P V+KAC G  S+ +G  +H +V  +GL  ++F G+ L+ +Y + G L +A+ + +++P 
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL--------------- 238
           KD V WN M+ GY +NG    A+ +  EM    IKP++ T A +L               
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL 181

Query: 239 ------------PSVTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                         V NT        + + + +++F      +LVSWN +I+ Y  N + 
Sbjct: 182 HGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLM 241

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            EA  L+  M   GI+P++I+ AS LP   +L +L   ++IH Y+ R  +  ++ L++AL
Sbjct: 242 GEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSAL 301

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +D+Y KC  +  A+ +  Q    D V  T+MIS Y ++G+  +A+  F  ++   + P S
Sbjct: 302 IDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTS 361

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           + F S+  A +    L  G+     + +  KL  +    + ++D+  + G+++ A  +  
Sbjct: 362 VTFSSIFPAFAGLAALNLGKELHGSIIKT-KLDEKCHVGSAILDMYAKCGRLDLACRVFN 420

Query: 461 QMPMEPNERIWGSLVAAC 478
           ++  E +   W S++ +C
Sbjct: 421 RIT-EKDAICWNSMITSC 437



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 8/132 (6%)

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MY + GSL +A+ +F  ++     +W  MI  + M GQ   A+  + KML +G+ PD   
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF---ACLVDLLGRAGKVEEAYDLI 459
           F  V+ AC     ++ G    KI+ E   L+   E     + L+ L    G + +A  L 
Sbjct: 61  FPYVVKACCGLKSVKMG----KIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLF 116

Query: 460 KQMPMEPNERIW 471
             +P + +  +W
Sbjct: 117 DNIP-QKDSVLW 127


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 199/574 (34%), Positives = 321/574 (55%), Gaps = 40/574 (6%)

Query: 12   STTKPVQAL-VLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKL 70
            S  K +Q L V+   YT      C   L K   +K  K++H   ++     SN ++   L
Sbjct: 456  SLFKKMQKLGVVGNCYTFTCVLKCFAALGK---VKECKRVHG-YVLKLGFGSNTAVVNSL 511

Query: 71   MRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDC 130
            +  Y   G +    ++FDE++  +VV +N +I   V N    + L ++  M + G + D 
Sbjct: 512  IAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDL 571

Query: 131  YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
             T   VL A +   +L +G  +H   VK      +   N L+ MY KCG L  A  V   
Sbjct: 572  TTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVK 631

Query: 191  MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV--------- 241
            M    +V+W S +A Y + G + +A+ +  EM+S  ++PD  T+ S++ +          
Sbjct: 632  MGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKG 691

Query: 242  -------------TNTSPENVL--------SVKE---MFLKLDNKNLVSWNVMIAVYANN 277
                         +N    N L        SV+E   +F K+  K++VSWN MI  Y+ N
Sbjct: 692  RDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQN 751

Query: 278  SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
            S+P EA++L+L M+    +P+ I++A VLPAC  L+AL  GR+IH ++ R+    +L + 
Sbjct: 752  SLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVA 810

Query: 338  NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
             ALVDMYAKCG L  A+ +FD +  +D++SWT MI+ YGM G G +A++ F++M ++G+ 
Sbjct: 811  CALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIE 870

Query: 398  PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
            PD  +F  +L+ACSH+GLL EG  +F  M  +  + P++EH+AC+VDLL R G + +AY 
Sbjct: 871  PDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYK 930

Query: 458  LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
             I+ MP++P+  IWG L++ C ++ ++ +    A+HIF L P+ + YYV+L+N+YA+A +
Sbjct: 931  FIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEK 990

Query: 518  WGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            W +VK++RK M  +G K+ PG S +E+  +  I 
Sbjct: 991  WEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIF 1024



 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 157/543 (28%), Positives = 264/543 (48%), Gaps = 47/543 (8%)

Query: 7   LCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTL---KKLHAQIIINQHLHSN 63
            C        ++ L  S  Y L     C+ +L    + K+L   K++H+ +II+  +  +
Sbjct: 346 FCEMGDLRNAIELLTKSKSYELGLNSYCS-VLQLCAEKKSLEDGKRVHS-VIISNGISID 403

Query: 64  PSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV 123
            ++G KL+  Y  CG +V  R +FD+I N  V  +N+L+  Y     + +++ ++K M  
Sbjct: 404 EALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQK 463

Query: 124 HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183
            G   +CYT+ CVLK  +    +    ++H  V+K+G   N    N L+A Y K G ++ 
Sbjct: 464 LGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVES 523

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           A  + +++   DVV+WNSM+ G   NG     L++  +M  L ++ D  T+ S+L +  N
Sbjct: 524 AHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWAN 583

Query: 244 T------------------SPENVLS---------------VKEMFLKLDNKNLVSWNVM 270
                              S E V S                 E+F+K+ +  +VSW   
Sbjct: 584 IGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTST 643

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
           IA Y    + ++A+ L+ +M+  G+ P+  +V S++ AC   S+L  GR +H YV +  +
Sbjct: 644 IAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGM 703

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
             NL + NAL++MYAKCGS+ EAR VF ++  +D+VSW +MI  Y  +    +A+ LF  
Sbjct: 704 GSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLD 763

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFAC-LVDLLGR 448
           M      PD I    VL AC+    L++GR  +  I+   Y       H AC LVD+  +
Sbjct: 764 M-QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYF---SDLHVACALVDMYAK 819

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCL--YSNMDIGILAADHIFHLAPNQSGYYV 506
            G +  A  L   +P + +   W  ++A   +  + N  I       I  + P++S + V
Sbjct: 820 CGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSV 878

Query: 507 LLS 509
           +L+
Sbjct: 879 ILN 881


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 182/547 (33%), Positives = 309/547 (56%), Gaps = 36/547 (6%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +K L +++ Q+I++  LH    + +K +      G +      F E++  +++ +N +I+
Sbjct: 15  LKHLDQVYVQLIVSG-LHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIK 73

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            Y    +    + +Y +M +    P+C+T+  VLKAC G++   +G QIH    K G   
Sbjct: 74  GYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGS 133

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           N+F  N LV+MY K G +  AR V + +  + VV+W S+++GY QNG   EAL+V +EM 
Sbjct: 134 NVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMR 193

Query: 224 SLRIKPDADTMASLLPSVTNTS--------------------PENVLSVKEMFLK----- 258
              +KPD   + S++ + TN                      P+ V+S+  M+ K     
Sbjct: 194 QCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVE 253

Query: 259 --------LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
                   ++  NL+ WN MI+ YANN    EA+ L+ +M    I  ++I++ S + A  
Sbjct: 254 VARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASA 313

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
            + +L L R +  Y+ + + + +  +   L+DMYAKCGS+  AR VFD++  +DVV W+ 
Sbjct: 314 QVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSV 373

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           MI  YG+ G G +A+ L+++M  +G+CP+   F+ +L+AC ++GL++EG   F +M + +
Sbjct: 374 MIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPD-H 432

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            + P  +H++C+VDLLGRAG + +AYD I  MP++P   +WG+L++AC ++  + +G +A
Sbjct: 433 GIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIA 492

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQI 549
           A+ +F L P  +G+YV LSN+YA A  W  V  VR  M  KG+ K  G +S+E+N  ++ 
Sbjct: 493 AEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLET 552

Query: 550 IALPLRS 556
             +  RS
Sbjct: 553 FQVGDRS 559


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 184/510 (36%), Positives = 304/510 (59%), Gaps = 12/510 (2%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSI-GLKLMRTYGACGQMVDTRHVFDE-ITNKNVVFFNVL 101
           ++ L ++ AQII +     +P+I  +K +    + G +  +  +F+  ++  N+  +N L
Sbjct: 37  MRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNAL 96

Query: 102 IRSYVNNYLYYDALHVYKNMSV--HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
           ++++  +  ++  +  + N  V  +  +PD YT+  VLKAC+G   +L G ++HC V K 
Sbjct: 97  LKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKY 156

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G + NLF  N LV +Y K GC   A+++ ++M  +DVV+WN++++GY  +G  D+A  V 
Sbjct: 157 GCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVF 216

Query: 220 REMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSM 279
             M    ++ +  + ++++         N+   +++F  +  +N+VSWN MIA YA N  
Sbjct: 217 DGM----MEKNLVSWSTMISGYARVG--NLEEARQLFENMPMRNVVSWNAMIAGYAQNEK 270

Query: 280 PAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
            A+A++L+ QM+  G + PN +++ SVL AC  L AL LG+ IHR++ R K++  L L N
Sbjct: 271 YADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGN 330

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           AL DMYAKCG + EA+ VF +M  +DV+SW+ +I    M G   +A   F++M+  GL P
Sbjct: 331 ALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEP 390

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           + I+F+ +L+AC+HAGL+++G  YF +M + Y + P+IEH+ C+VDLL RAG++++A  L
Sbjct: 391 NDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESL 450

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
           I  MPM+PN  +WG+L+  C +Y + + G      I  L  N SG  V L+N+YA  GR 
Sbjct: 451 INSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRL 510

Query: 519 GDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
            D    R  M      K PG S +E+N+ V
Sbjct: 511 DDAASCRLRMRDNKSMKTPGCSWIEINNSV 540


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 195/522 (37%), Positives = 294/522 (56%), Gaps = 39/522 (7%)

Query: 63  NPSI-GLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
            PS+    L+++Y   G + + R +FDE+  ++VV + V+I  Y +   +  A  V+  M
Sbjct: 41  GPSVLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEM 100

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC- 180
                DP+ +T   VLKAC G   L  G  +H   +K GLD  ++  N L+ MY  C C 
Sbjct: 101 MNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATC-CV 159

Query: 181 -LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM--ESLRIKPDADTMA-- 235
            + +A  V   +  K+ V+W +++AGY         L V R+M  E + + P + ++A  
Sbjct: 160 SMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVR 219

Query: 236 ------------SLLPSVTNTSPENVLSV-----------------KEMFLKLDNKNLVS 266
                        L  +VT    E+ L V                    F +++ ++L++
Sbjct: 220 ACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLIT 279

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           WN +IA Y   S P E++ ++  ME  G  PN  +  S++ AC  L+ L  G++IH  + 
Sbjct: 280 WNTLIAGY-ERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRII 338

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           R+ L  NL L NAL+DMY+KCG++ ++  VF  M  +D+VSWT+M+  YG  G G +AV 
Sbjct: 339 RRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVE 398

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           LF KM+ SG+ PD + F+++LSACSHAGL++EG  YFK+M   Y + P  E + C+VDLL
Sbjct: 399 LFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLL 458

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
           GRAGKVEEAY+LI+ MP +P+E +WG  + AC  ++  ++G LAA  I  L P+ +G YV
Sbjct: 459 GRAGKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYV 518

Query: 507 LLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           +LSNIYA  G+WG+  R+RK M   G KK  G S VE+ + V
Sbjct: 519 MLSNIYAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGNHV 560



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 105/198 (53%), Gaps = 2/198 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LHA +       SN  +   ++  Y  C    +    F E+  ++++ +N LI  Y  
Sbjct: 231 EQLHAAVT-KHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYER 289

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +    ++L+V+  M   GF P+C+T+  ++ AC+    L  G QIH  +++ GLD NL  
Sbjct: 290 SNPT-ESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLAL 348

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY KCG + ++ +V   M  +D+V+W +M+ GY  +G  +EA+++  +M    I
Sbjct: 349 SNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGI 408

Query: 228 KPDADTMASLLPSVTNTS 245
           +PD     ++L + ++  
Sbjct: 409 RPDRVVFMAILSACSHAG 426



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 9/162 (5%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++H +II  + L  N ++   L+  Y  CG + D+  VF  ++ +++V +  ++  Y  
Sbjct: 331 QQIHGRII-RRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGT 389

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +    +A+ ++  M   G  PD   +  +L ACS +  +  GL+    +V    DYN+  
Sbjct: 390 HGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVG---DYNISP 446

Query: 168 GNGL----VAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVA 204
              +    V + G+ G ++EA  ++  MP K D   W   + 
Sbjct: 447 DQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLG 488


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 187/510 (36%), Positives = 272/510 (53%), Gaps = 46/510 (9%)

Query: 36  DILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACG---QMVDTRHVFD--EI 90
           D+L  +     L+++HAQII      + P   L L R    C         + +F+  E 
Sbjct: 33  DLLRNFNSPFELRQVHAQIIKT----NAPLSILPLTRVGLVCAFTPSFHYAQQIFECVEK 88

Query: 91  TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGL 150
                  +N  +++        DA+ ++  +  +   PD +T   VL+AC     L  G 
Sbjct: 89  QKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGR 148

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
            +H  V KVG   NL+  N +V +Y  CG + EAR +   MP +DVVTWN M+A   + G
Sbjct: 149 ILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQG 208

Query: 211 RFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVM 270
             + A D                                     +F ++  +N+ SW  M
Sbjct: 209 DHEGAYD-------------------------------------LFSRMPERNVRSWTSM 231

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
           IA Y       EA+ L+ +ME  G++ N ++V +VL AC DL AL LG +IH Y  R   
Sbjct: 232 IAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGF 291

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
           + N+R+ N L+DMY KCG L EA  VF++M  + VVSW++MI    M G+  +A+ LFS 
Sbjct: 292 KRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSD 351

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450
           M   G+ P+ + F+ +L ACSH GL+ EGR +F  MT  Y ++P+IEH+ C+VDLL RAG
Sbjct: 352 MSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAG 411

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSN 510
            + EA++ I  MPM+PN  +WG+L+ AC ++ N+++   A  H+  L P   GYYV+LSN
Sbjct: 412 LLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSN 471

Query: 511 IYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           IYA+AGRW D  RVRKFM  + +KK PG S
Sbjct: 472 IYAEAGRWEDTARVRKFMKDRQVKKTPGWS 501


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 182/537 (33%), Positives = 305/537 (56%), Gaps = 35/537 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H   I       +P +   L+  YG C  +     VF+E+ +K +  +N LI +YV 
Sbjct: 261 KQVHCDAI-KVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVG 319

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N   YDAL +YK M +     D +T   VL + S +    +G  IH  +VK  L  ++  
Sbjct: 320 NGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITI 379

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            + L+ MY K G    A  + + M  +DVV W S+++G+ QN ++ EALD  R ME+  +
Sbjct: 380 QSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLV 439

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMF-----LKLDN--------------------- 261
           KPD+D MAS++ + T     ++      F     L+LD                      
Sbjct: 440 KPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGN 499

Query: 262 -------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
                  KNLV+WN +I+ Y  N++P  +++L+ Q+  + + P+++S  SVL A   ++A
Sbjct: 500 IFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAA 559

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           LL G+ +H Y+ R  +  +L++EN L+DMY KCG L  A+ +F+++  +++V+W SMI  
Sbjct: 560 LLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGG 619

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
           YG  G+   A+ LF +M  SG+ PD + F+S+LS+C+H+GL+EEG + F++M  ++ + P
Sbjct: 620 YGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMKFGIEP 679

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
           R+EH+  +VDL GRAG + +AY  +K MP+EP+  IW SL+ +C ++ N+++G + A+ +
Sbjct: 680 RMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSLLCSCKIHLNLELGEMVANKL 739

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            ++ P++   YV L N+Y +A  W     +R  M  KG+KK PG S +E+ ++V + 
Sbjct: 740 LNMEPSKGSNYVQLLNLYGEAELWDRTANLRASMKEKGLKKTPGCSWIEVRNKVDVF 796



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 138/557 (24%), Positives = 271/557 (48%), Gaps = 78/557 (14%)

Query: 45  KTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFFNVLIR 103
           K  K++H+ I+ N  L+ +P +   L+ TY  CG+  + R++F ++ ++ N+V +NV+I 
Sbjct: 156 KEGKQIHSYIVRNM-LNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIG 214

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            +  N L+ ++L  Y             ++ C L AC     +  G Q+HC  +KVG + 
Sbjct: 215 GFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFED 274

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           + +    L+ MYGKC  ++ A +V N++P K++  WN++++ Y  NG   +AL + ++M+
Sbjct: 275 DPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMK 334

Query: 224 SLRIKPDADTMASLLPS----------------VTNTSPENVLSVK-------------- 253
              +  D+ T+ ++L S                +     ++ ++++              
Sbjct: 335 LCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSN 394

Query: 254 ---EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
               +F  +  +++V+W  +I+ +  N    EA+D +  ME   ++P++  +AS++ AC 
Sbjct: 395 YANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACT 454

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
            L  + LG  IH +V +  LQ ++ + ++L+DMY+K G    A  +F  M  +++V+W S
Sbjct: 455 GLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNS 514

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR---------- 420
           +IS Y  +     ++ LFS++L + L PDS++F SVL+A S    L +G+          
Sbjct: 515 IISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLW 574

Query: 421 -------------YYFKIMTEQY--KLVPRIEH-----FACLVDLLGRAGKVEEAYDLIK 460
                         Y K    +Y   +  RI       +  ++   G  G+  +A +L  
Sbjct: 575 IPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFD 634

Query: 461 QM---PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG------YYVLLSNI 511
           +M    ++P++  + SL+++C     ++ G+    H+F +   + G      +YV + ++
Sbjct: 635 EMRSSGIKPDDVTFLSLLSSCNHSGLIEEGL----HLFEMMKMKFGIEPRMEHYVNIVDL 690

Query: 512 YAKAGRWGDVKRVRKFM 528
           Y +AG  GD     K M
Sbjct: 691 YGRAGCLGDAYSFVKNM 707



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 195/399 (48%), Gaps = 28/399 (7%)

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           I+S V    Y +AL +Y    V+      +TYP +LKAC+  ++L  G  IH S++  GL
Sbjct: 28  IKSLVQQRQYIEALKLYTKSPVY---TTRFTYPSLLKACASLSNLQYGKTIHSSIITTGL 84

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-----DVVTWNSMVAGYAQNGRFDEAL 216
             + +  + L+ +Y KCG   +A +V + +P       DV  WNS++ GY + G+ +E +
Sbjct: 85  HSDQYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGM 144

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSP--ENVL-----------SVKEMFLKL-DNK 262
                M+S   K      + ++ ++ N  P  E  L             + +F KL D  
Sbjct: 145 VQFGRMQSSGYKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRS 204

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH 322
           N+V+WNVMI  +  N +   +++ YL  +   ++  + S    L ACG    +  G+++H
Sbjct: 205 NIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVH 264

Query: 323 RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY 382
               +   + +  +  +L+ MY KC  +  A  VF+++  +++  W ++ISAY  +G  Y
Sbjct: 265 CDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAY 324

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK--LVPRIEHFA 440
           DA+ ++ +M +  +  DS   ++VL++ S AGL + GR    I TE  K  L   I   +
Sbjct: 325 DALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRL---IHTEIVKRPLQSSITIQS 381

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
            L+ +  + G    A  +   M  E +   WGS+++  C
Sbjct: 382 ALLTMYSKFGDSNYANSIFSTMK-ERDVVAWGSVISGFC 419



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 121/512 (23%), Positives = 228/512 (44%), Gaps = 68/512 (13%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI-RSYV 106
           K +H+ II    LHS+  I   L+  Y  CG   D   VFD++    V   +V I  S +
Sbjct: 73  KTIHSSIITTG-LHSDQYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSII 131

Query: 107 NNYLYYDALH----VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
           + Y  +  L      +  M   G+                      G QIH  +V+  L+
Sbjct: 132 DGYFRFGQLEEGMVQFGRMQSSGYKE--------------------GKQIHSYIVRNMLN 171

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCRE 221
           ++ F    L+  Y KCG   EAR +   +  + ++V WN M+ G+ +NG ++ +L+    
Sbjct: 172 FDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLL 231

Query: 222 MESLRIKPDADTMASLL---------------------------PSVTNT------SPEN 248
            ++  +K  + +    L                           P V  +        + 
Sbjct: 232 AKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQM 291

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           + S +++F ++ +K +  WN +I+ Y  N    +A+ +Y QM++  +  ++ ++ +VL +
Sbjct: 292 IESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTS 351

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
                   LGR IH  + ++ LQ ++ +++AL+ MY+K G    A ++F  M+ +DVV+W
Sbjct: 352 SSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAW 411

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            S+IS +  + +  +A+  F  M    + PDS    S++SAC+    LE+      I   
Sbjct: 412 GSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTG---LEKVDLGCTIHGF 468

Query: 429 QYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
             K   +++ F  + L+D+  + G  E A ++   MP++ N   W S+++  C  +  D+
Sbjct: 469 VIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLK-NLVAWNSIISCYCRNNLPDL 527

Query: 487 GILAADHIFH--LAPNQSGYYVLLSNIYAKAG 516
            I     +    L P+   +  +L+ I + A 
Sbjct: 528 SINLFSQVLRNDLYPDSVSFTSVLAAISSVAA 559



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 185/387 (47%), Gaps = 39/387 (10%)

Query: 21  VLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQM 80
           VLS  +T+L+    + +   Y D+  L  +H +I+  + L S+ +I   L+  Y   G  
Sbjct: 338 VLSDSFTILNVLTSSSMAGLY-DLGRL--IHTEIV-KRPLQSSITIQSALLTMYSKFGDS 393

Query: 81  VDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC 140
                +F  +  ++VV +  +I  +  N  Y +AL  ++ M      PD      ++ AC
Sbjct: 394 NYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISAC 453

Query: 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWN 200
           +G   + +G  IH  V+K GL  ++F  + L+ MY K G  + A  + +DMP K++V WN
Sbjct: 454 TGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWN 513

Query: 201 SMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP-------------- 246
           S+++ Y +N   D ++++  ++    + PD+ +  S+L ++++ +               
Sbjct: 514 SIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRL 573

Query: 247 --------ENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
                   EN L             + +F ++  KNLV+WN MI  Y ++   ++A++L+
Sbjct: 574 WIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELF 633

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAK 346
            +M   GI+P+ ++  S+L +C     +  G  +   ++ K  ++P +     +VD+Y +
Sbjct: 634 DEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGR 693

Query: 347 CGSLTEARTVFDQMRCQ-DVVSWTSMI 372
            G L +A +    M  + D   W S++
Sbjct: 694 AGCLGDAYSFVKNMPVEPDRSIWLSLL 720


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 181/522 (34%), Positives = 300/522 (57%), Gaps = 34/522 (6%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
           L  +  +G  L+  YG CG    ++ VFDEI  +NV+ +N +I S+     Y DAL V++
Sbjct: 272 LGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFR 331

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M   G  P+  T   +L          +G+++H   +K+ ++ ++F  N L+ MY K G
Sbjct: 332 LMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSG 391

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
             + A  + N M  +++V+WN+M+A +A+N    EA+++ R+M++    P+  T  ++LP
Sbjct: 392 SSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLP 451

Query: 240 SVTNTSPENV--------------------------------LSVKEMFLKLDNKNLVSW 267
           +       NV                                L++ +    +  ++ VS+
Sbjct: 452 ACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFNISVRDEVSY 511

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
           N++I  Y+  +   E++ L+ +M + G+ P+ +S   V+ AC +L+ +  G++IH  + R
Sbjct: 512 NILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVR 571

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
           K    +L + N+L+D+Y +CG +  A  VF  ++ +DV SW +MI  YGM G+   A+ L
Sbjct: 572 KLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINL 631

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           F  M   G+  DS++FV+VLSACSH GL+E+GR YFK+M +   + P   H+AC+VDLLG
Sbjct: 632 FEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCD-LNIEPTHTHYACMVDLLG 690

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507
           RAG +EEA DLI+ + + P+  IWG+L+ AC ++ N+++G+ AA+H+F L P   GYY+L
Sbjct: 691 RAGLMEEAADLIRGLSIIPDTNIWGALLGACRIHGNIELGLWAAEHLFELKPQHCGYYIL 750

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           LSN+YA+A RW +  +VR+ M S+G KK PG S V++ D V 
Sbjct: 751 LSNMYAEAERWDEANKVRELMKSRGAKKNPGCSWVQVGDLVH 792



 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 121/413 (29%), Positives = 218/413 (52%), Gaps = 43/413 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT--NKNVVFFNVLIRSY 105
           K++HA  +++  L  + S+   L+  Y + G   ++  +F      +++   +N LIR+ 
Sbjct: 54  KQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTLIRA- 112

Query: 106 VNNYL--YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
             N +   +D    Y  M   G  PD  TYP VLK CS    +  G ++H    K+G D 
Sbjct: 113 --NSIAGVFDGFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDG 170

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           ++F GN L+A YG CG   +A +V ++MP +D V+WN+++   + +G ++EAL   R M 
Sbjct: 171 DVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMV 230

Query: 224 SLR--IKPDADTMASLLPSVTNTSPE-----------------------NVL-------- 250
           + +  I+PD  T+ S+LP    T  +                       N L        
Sbjct: 231 AAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCG 290

Query: 251 ---SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
              + K++F ++D +N++SWN +I  ++      +A+D++  M   G+ PN+++++S+LP
Sbjct: 291 SEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLP 350

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
             G+L    LG ++H +  +  ++ ++ + N+L+DMYAK GS   A T+F++M  +++VS
Sbjct: 351 VLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVS 410

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           W +MI+ +  +   Y+AV L  +M   G  P+++ F +VL AC+  G L  G+
Sbjct: 411 WNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGK 463



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 23/194 (11%)

Query: 267 WNVMIAVYANNSMPA--EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           WN +I     NS+    +    Y  M   G++P+  +   VL  C D   +  GR++H  
Sbjct: 106 WNTLIRA---NSIAGVFDGFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGV 162

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
             +     ++ + N L+  Y  CG   +A  VFD+M  +D VSW ++I    + G   +A
Sbjct: 163 AFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEA 222

Query: 385 VALFSKMLMS--GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH-FAC 441
           +  F  M+ +  G+ PD +  VSVL  C+               TE  K++ RI H +A 
Sbjct: 223 LGFFRVMVAAKPGIQPDLVTVVSVLPVCAE--------------TED-KVMARIVHCYAL 267

Query: 442 LVDLLGRAGKVEEA 455
            V LLG   KV  A
Sbjct: 268 KVGLLGGHVKVGNA 281



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 86/186 (46%), Gaps = 6/186 (3%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           I+  K++H  +++ +  H++  +   L+  Y  CG++     VF  I NK+V  +N +I 
Sbjct: 559 IRQGKEIHG-LLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMIL 617

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            Y        A+++++ M   G + D  ++  VL ACS    +  G +    +  + ++ 
Sbjct: 618 GYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCDLNIEP 677

Query: 164 NLFNGNGLVAMYGKCGCLKEAR---RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
              +   +V + G+ G ++EA    R L+ +P  ++  W +++     +G  +  L    
Sbjct: 678 THTHYACMVDLLGRAGLMEEAADLIRGLSIIPDTNI--WGALLGACRIHGNIELGLWAAE 735

Query: 221 EMESLR 226
            +  L+
Sbjct: 736 HLFELK 741


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 197/562 (35%), Positives = 309/562 (54%), Gaps = 47/562 (8%)

Query: 24  TQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT 83
           ++  LL    C+  L K  ++ ++ ++HAQ++   +LH +  +  KL+  +  C  +   
Sbjct: 16  SRRRLLEEKLCD--LHKCTNLDSVNQIHAQVL-KANLHQDLFVAPKLIAAFSLCRHLASA 72

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYD-ALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
            +VF+ + + NV  +N +IR++ +N  +     + +  M  +G  PD +TYP +LKACSG
Sbjct: 73  VNVFNHVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSG 132

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG----------------------- 179
            +SL +   IH  V K+G   ++F  N L+  Y +CG                       
Sbjct: 133 PSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWN 192

Query: 180 --------C--LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
                   C  L+ A ++ ++MP +D+V+WN+M+ GYA+ G  D A ++   M    I  
Sbjct: 193 SMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNI-- 250

Query: 230 DADTMASLLPSVTNTSPENVLSVKEM-FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
                 S    V   S    + +  M F +   KN+V W  +IA YA   +  EA +LY 
Sbjct: 251 -----VSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYG 305

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           +ME  G+ P+   + S+L AC +   L LG++IH  + R + +   ++ NA +DMYAKCG
Sbjct: 306 KMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCG 365

Query: 349 SLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
            L  A  VF  M  + DVVSW SMI  + M G G  A+ LFS M+  G  PD+  FV +L
Sbjct: 366 CLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLL 425

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
            AC+HAGL+ EGR YF  M + Y +VP++EH+ C++DLLGR G ++EA+ L++ MPMEPN
Sbjct: 426 CACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPMEPN 485

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527
             I G+L+ AC +++++D+     + +F L P+  G Y LLSNIYA+AG W +V  VR  
Sbjct: 486 AIILGTLLNACRMHNDVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQAGDWMNVANVRLQ 545

Query: 528 MNSKGIKKMPGA-SVEMNDQVQ 548
           M + G +K  GA S+E+ ++V 
Sbjct: 546 MKNTGGEKPSGASSIEVEEEVH 567


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 186/511 (36%), Positives = 301/511 (58%), Gaps = 18/511 (3%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLM---RTYGACGQM--VDTRHVFD---EITNKNV 95
           IK LK++HA II      + PS   +L    R    C Q   +D R+      ++   N+
Sbjct: 50  IKGLKQIHASII-----KTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPNL 104

Query: 96  VFFNVLIRSY-VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
             +N +IR    +N    + L VYK M   G  PD YT P VLKAC+ S ++  G ++H 
Sbjct: 105 PLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHG 164

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
             +K+GL  +++  N L+ MY  C  ++ AR+V +  P +D+V+W +M+ GY + G   E
Sbjct: 165 QAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFARE 224

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
            + +   + +  +  D     +L+         N    +++F ++  KN+VSWN MI+  
Sbjct: 225 GVGLYI-IRNSNVNLDVFVGNALVDMYLKCGDANF--ARKVFQEMPVKNVVSWNSMISGL 281

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           A      E++ ++ +M+  G++P+ +++ +VL +C +L  L LG+ +H Y++R +++ + 
Sbjct: 282 AQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADG 341

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + NALVDMYAKCGS+ +A  VF  M  +DV S+T+MI    M GQG  A+ LFS+M   
Sbjct: 342 FIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKM 401

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           G+ PD + FV VL+ACSH GL+EEGR YF+ M+  Y L P++EH+ C+VDLLGRAG + E
Sbjct: 402 GIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINE 461

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A + I+ MP+EP+  + G+L+ AC ++  +++G      I  + P + G YVL+SNIY+ 
Sbjct: 462 AEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSS 521

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPG-ASVEMN 544
           A RW D  ++RK M  + ++K PG +S+E++
Sbjct: 522 ANRWRDALKLRKTMKERNLEKTPGCSSIELD 552


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 187/525 (35%), Positives = 311/525 (59%), Gaps = 16/525 (3%)

Query: 31  GDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD---TRHVF 87
           G     +L     +  + ++HA +II   L  N  +  KL+R   AC    D    R VF
Sbjct: 3   GKKVMSLLQNATKLNQIIQIHA-LIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVF 61

Query: 88  DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP-DCYTYPCVLKACSGSNSL 146
           DEI + +   +N +IR+Y+N+    +++ ++  M      P D Y+   V++AC      
Sbjct: 62  DEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDP 121

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY 206
             G ++H  V+K+GL  +LF    L+ MY K G ++ AR +L++M   D+V +N ++A Y
Sbjct: 122 GNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEY 181

Query: 207 AQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS 266
            + G  + A D+   M      P+ D ++       + S  +V + K++F +   ++L+S
Sbjct: 182 VRVGEINLAHDLFDRM------PERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLIS 235

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           W+ MIA YA      EA+ L+ +M++  + P+ +++ SVL ACGD+ AL +G+ IH  +E
Sbjct: 236 WSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIE 295

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           R +++ +L+L  +LVDMYAKCG +  +  VF+ M  +DV +W++MI   G++  G+  +A
Sbjct: 296 RNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMI--MGLANHGFGELA 353

Query: 387 L--FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           L  FSKM+   + P+ + F+ VLSACSH GL++EG  YF  M++ Y + P+IEH+ C+VD
Sbjct: 354 LDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVD 413

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY 504
           +LGRAG+++EA +LIK MP  P+  +W +L+ AC +Y N++I   A  ++  L P+  G 
Sbjct: 414 ILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGN 473

Query: 505 YVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           YVLLSNIY++A  W  V  VR+ M +  I+K+PG +S+E+++ V 
Sbjct: 474 YVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVH 518


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 182/546 (33%), Positives = 308/546 (56%), Gaps = 36/546 (6%)

Query: 45  KTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           K L +++ Q+I++  LH    + +K +      G +      F E++  +++ +N +I+ 
Sbjct: 1   KHLDQVYVQLIVSG-LHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKG 59

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
           Y    +    + +Y +M +    P+C+T+  VLKAC G++   +G QIH    K G   N
Sbjct: 60  YTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSN 119

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
           +F  N LV+MY K G +  AR V + +  + VV+W S+++GY QNG   EAL+V +EM  
Sbjct: 120 VFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQ 179

Query: 225 LRIKPDADTMASLLPSVTNTS--------------------PENVLSVKEMFLK------ 258
             +KPD   + S++ + TN                      P+ V+S+  M+ K      
Sbjct: 180 CNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEV 239

Query: 259 -------LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
                  ++  NL+ WN MI+ YANN    EA+ L+ +M    I  ++I++ S + A   
Sbjct: 240 ARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQ 299

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           + +L L R +  Y+ + + + +  +   L+DMYAKCGS+  AR VFD++  +DVV W+ M
Sbjct: 300 VGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVM 359

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           I  YG+ G G +A+ L+++M  +G+CP+   F+ +L+AC ++GL++EG   F +M + + 
Sbjct: 360 IMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPD-HG 418

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
           + P  +H++C+VDLLGRAG + +AYD I  MP++P   +WG+L++AC ++  + +G +AA
Sbjct: 419 IEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAA 478

Query: 492 DHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQII 550
           + +F L P  +G+YV LSN+YA A  W  V  VR  M  KG+ K  G +S+E+N  ++  
Sbjct: 479 EQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETF 538

Query: 551 ALPLRS 556
            +  RS
Sbjct: 539 QVGDRS 544


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 185/552 (33%), Positives = 302/552 (54%), Gaps = 44/552 (7%)

Query: 33  ACNDILDKYPD-IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
           ACN     +P+ ++  KK+HA++       +   +G  ++  Y  CG M D   VFD + 
Sbjct: 321 ACN-----HPEALEQGKKVHARMK-EVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVK 374

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
            +NVV +  +I  +  +    +A   +  M   G +P+  T+  +L ACS  ++L  G Q
Sbjct: 375 GRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQ 434

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           I   +++ G   +      L++MY KCG LK+A RV   +  ++VV WN+M+  Y Q+ +
Sbjct: 435 IQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQ 494

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE------------------------ 247
           +D AL   + +    IKP++ T  S+L +V  +S                          
Sbjct: 495 YDNALATFQALLKEGIKPNSSTFTSIL-NVCKSSDSLELGKWVHFLIMKAGLESDLHVSN 553

Query: 248 ----------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297
                     +++S K +F  +  ++LVSWN +IA +  +     A D +  M+  GI+P
Sbjct: 554 ALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKP 613

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           + I+   +L AC    AL  GR++H  +       ++ +   L+ MY KCGS+ +A  VF
Sbjct: 614 DKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVF 673

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
            ++  ++V SWTSMI+ Y   G+G +A+ LF +M   G+ PD I FV  LSAC+HAGL+E
Sbjct: 674 HKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIE 733

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           EG ++F+ M E + + PR+EH+ C+VDL GRAG + EA + I +M +EP+ R+WG+L+ A
Sbjct: 734 EGLHHFQSMKE-FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGA 792

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
           C ++ N+++   AA     L PN +G +V+LSNIYA AG W +V ++RK M  +G+ K P
Sbjct: 793 CQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKP 852

Query: 538 GAS-VEMNDQVQ 548
           G S +E++ +V 
Sbjct: 853 GQSWIEVDGKVH 864



 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 136/444 (30%), Positives = 233/444 (52%), Gaps = 41/444 (9%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  CG  +  + +FD++  K+V  +N+L+  YV + LY +A  +++ M      PD
Sbjct: 151 LINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPD 210

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T+  +L AC+ + ++  G +++  ++K G D +LF G  L+ M+ KCG + +A +V +
Sbjct: 211 KRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFD 270

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
           ++P++D+VTW SM+ G A++GRF +A ++ + ME   ++PD     SLL +  +  PE +
Sbjct: 271 NLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNH--PEAL 328

Query: 250 LSVK-----------------------------------EMFLKLDNKNLVSWNVMIAVY 274
              K                                   E+F  +  +N+VSW  MIA +
Sbjct: 329 EQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGF 388

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           A +    EA   + +M   GIEPN ++  S+L AC   SAL  G++I  ++       + 
Sbjct: 389 AQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDD 448

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
           R+  AL+ MYAKCGSL +A  VF+++  Q+VV+W +MI+AY    Q  +A+A F  +L  
Sbjct: 449 RVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKE 508

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           G+ P+S  F S+L+ C  +  LE G++ +F IM  +  L   +     LV +    G + 
Sbjct: 509 GIKPNSSTFTSILNVCKSSDSLELGKWVHFLIM--KAGLESDLHVSNALVSMFVNCGDLM 566

Query: 454 EAYDLIKQMPMEPNERIWGSLVAA 477
            A +L   MP + +   W +++A 
Sbjct: 567 SAKNLFNDMP-KRDLVSWNTIIAG 589



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 211/429 (49%), Gaps = 47/429 (10%)

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
           TY  +L+ C    +L  G +I+  + K G+  ++F  N L+ MY KCG    A+++ +DM
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDM 171

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS 251
             KDV +WN ++ GY Q+G ++EA  +  +M    +KPD  T  S+L +  +    NV  
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADA--RNVDK 229

Query: 252 VKEM-----------------------------------FLKLDNKNLVSWNVMIAVYAN 276
            +E+                                   F  L  ++LV+W  MI   A 
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLAR 289

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           +    +A +L+ +ME  G++P+ ++  S+L AC    AL  G+K+H  ++       + +
Sbjct: 290 HGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYV 349

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
             A++ MY KCGS+ +A  VFD ++ ++VVSWT+MI+ +   G+  +A   F+KM+ SG+
Sbjct: 350 GTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGI 409

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYF-KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
            P+ + F+S+L ACS    L+ G+     I+   Y    R+     L+ +  + G +++A
Sbjct: 410 EPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDA 467

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH--LAPNQSGYYVLL----S 509
           + + +++  + N   W +++ A   +   D  +     +    + PN S +  +L    S
Sbjct: 468 HRVFEKISKQ-NVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKS 526

Query: 510 NIYAKAGRW 518
           +   + G+W
Sbjct: 527 SDSLELGKW 535



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 179/403 (44%), Gaps = 77/403 (19%)

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP-------------- 239
           KD    N+++   ++ G+F+EA+ V   ++S  I+    T ++LL               
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 240 ----SVTNTSPE---------------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                 +   P+               N +S K++F  +  K++ SWN+++  Y  + + 
Sbjct: 133 YNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            EA  L+ QM    ++P+  +  S+L AC D   +  GR+++  + +     +L +  AL
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           ++M+ KCG + +A  VFD +  +D+V+WTSMI+     G+   A  LF +M   G+ PD 
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTE---------------QYKLVPRIEHFACLVDL 445
           +AFVS+L AC+H   LE+G+     M E                Y     +E    + DL
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDL 372

Query: 446 ---------------LGRAGKVEEAYDLIKQM---PMEPNERIWGSLVAACCLYSNMDIG 487
                            + G+++EA+    +M    +EPN   + S++ AC   S +  G
Sbjct: 373 VKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRG 432

Query: 488 ILAADHIFHLAPNQSGY------YVLLSNIYAKAGRWGDVKRV 524
               DHI      ++GY         L ++YAK G   D  RV
Sbjct: 433 QQIQDHII-----EAGYGSDDRVRTALLSMYAKCGSLKDAHRV 470


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 205/594 (34%), Positives = 310/594 (52%), Gaps = 91/594 (15%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC +I    P ++    +HA I+    L SN  I   ++  YG CG + D   +FDE+  
Sbjct: 136 ACGEI----PSLRHGASVHA-IVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLE 190

Query: 93  K---NVVFFNVLIRSYVNNYLYYDALHVYKNMSVH---GFDPDCYTYPCVLKACSGSNSL 146
           +   ++V +N ++ +YV       AL +   M  H      PD  T   +L AC+   +L
Sbjct: 191 RKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFAL 250

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY 206
             G Q+H   V+ GL  ++F GN LV+MY KC  + EA +V   +  KDVV+WN+MV GY
Sbjct: 251 QHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGY 310

Query: 207 AQNGRFD-----------------------------------EALDVCREMESLRIKPDA 231
           +Q G FD                                   EALDV R+M+   ++P+ 
Sbjct: 311 SQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNV 370

Query: 232 DTMASLLPSVTNTSP------------ENVLSVK---------------EMFLKLD---- 260
            T+ASLL    +               +N+L++                +M+ K      
Sbjct: 371 VTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRV 430

Query: 261 -----------NKNLVSWNVMIAVYANNSMPAEAVDLYLQM--EVHGIEPNAISVASVLP 307
                      +KN+V+W VMI  YA +    +A+ L+ Q+  +   ++PNA +++  L 
Sbjct: 431 ARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALM 490

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPN-LRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
           AC  L  L LGR++H Y  R + +   L + N L+DMY+K G +  AR VFD M+ ++VV
Sbjct: 491 ACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVV 550

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           SWTS+++ YGM G+G +A+ LF +M   G   D I F+ VL ACSH+G++++G  YF  M
Sbjct: 551 SWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDM 610

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
            + + + P  EH+AC+VDLLGRAG++ EA +LIK M MEP   +W +L++A  +++N+++
Sbjct: 611 VKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIEL 670

Query: 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           G  AA  +  L     G Y LLSN+YA A RW DV R+R  M   GI+K PG S
Sbjct: 671 GEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCS 724



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 154/519 (29%), Positives = 241/519 (46%), Gaps = 96/519 (18%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI--TNKNVVFFNVLIRSY 105
           K  H QI +    H    +    +  Y  CG   +   +   +  ++  V ++N LIR  
Sbjct: 47  KLAHQQIFV----HGFTEMFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRS 102

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
           V   L  D L  Y  M   G+ PD YT+P VLKAC    SL  G  +H  V   GL  N+
Sbjct: 103 VKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNV 162

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSK---DVVTWNSMVAGYAQNGRFDEALDVCREM 222
           F  N +VAMYG+CG L +A ++ +++  +   D+V+WNS++A Y Q G+   AL +   M
Sbjct: 163 FICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRM 222

Query: 223 E---SLRIKPDADTMASLLP-----------------SVTNTSPENVL------------ 250
               SL+++PDA T+ ++LP                 SV N   ++V             
Sbjct: 223 GNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKC 282

Query: 251 ----SVKEMFLKLDNKNLVSWNVM-----------------------------------I 271
                  ++F  +  K++VSWN M                                   I
Sbjct: 283 SKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVI 342

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           A YA      EA+D++ QM+++G+EPN +++AS+L  C  + ALL G++ H YV +  L 
Sbjct: 343 AGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILN 402

Query: 332 PN-------LRLENALVDMYAKCGSLTEARTVFDQMRCQD--VVSWTSMISAYGMSGQGY 382
            N       L + N L+DMYAKC S   AR++FD +  +D  VV+WT MI  Y   G+  
Sbjct: 403 LNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEAN 462

Query: 383 DAVALFSKML--MSGLCPDSIAFVSVLSACSHAGLLEEGR--YYFKIMTEQYKLVPRIEH 438
           DA+ LF+++    + L P++      L AC+  G L  GR  + + +  E    V  + +
Sbjct: 463 DALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGN 522

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             CL+D+  ++G ++ A  +   M +  N   W SL+  
Sbjct: 523 --CLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLMTG 558


>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 605

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 196/542 (36%), Positives = 306/542 (56%), Gaps = 32/542 (5%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
           L K  +   +K++HAQ+I   HLH +P I  KL+ +Y     +    +VF+++ + NV  
Sbjct: 29  LHKCTNPNHIKQIHAQLI-KCHLHQDPYIAPKLIASYSLTNNLSSAVNVFNQVPDPNVHL 87

Query: 98  FNVLIRSYV---NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ-IH 153
           +N LIR+Y    N      A  V   M V G   D +TYP +LK C+GS+S L  ++ +H
Sbjct: 88  YNYLIRAYSLSGNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSWLSLVKMVH 147

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
             V K+G  +++F  N L+  Y +CG ++ A +V + M  +DVV+WNSMV G  +NG  D
Sbjct: 148 AHVEKLGFYWDIFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLD 207

Query: 214 EALDVCREM-ESLRIKPD--------ADTMASLLPSVTNTSPENVLSVKEM--------- 255
            AL V  EM E  R+  +        A  M          +  +++S   M         
Sbjct: 208 GALKVFDEMPERDRVSWNTMLDGFTKAGEMDKAFKLFERMAERDIVSWSTMVCGYSKNGD 267

Query: 256 -------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
                  F +   KNLV W  +I+ YA      EA++L  +ME  G+  +     S+L A
Sbjct: 268 MDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAA 327

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVS 367
           C +   L LG+K+H    R + + + ++ N+ +DMYAKCG + +A  VF+ M+ + D+VS
Sbjct: 328 CAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVS 387

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W SMI  +G+ G G  ++ LF+ M+  G  PD   F+ +L AC+HAGL+ EGR YF  M 
Sbjct: 388 WNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACTHAGLVNEGRGYFYSMQ 447

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
             Y +VP+IEH+ C+VDLLGR G ++EA+ L++ MP EPN  I G+L+ AC +++++ + 
Sbjct: 448 RVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLVRSMPFEPNAIILGTLLGACRMHNDVKLA 507

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQ 546
              + ++F L P+  G + LLSNIYA++G W +V +VRK MN +G +K  G +S+E+ ++
Sbjct: 508 TSVSKYLFKLVPSDPGNFSLLSNIYAQSGDWINVAKVRKQMNDEGGQKPSGVSSIEVEEE 567

Query: 547 VQ 548
           V 
Sbjct: 568 VH 569


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 198/516 (38%), Positives = 290/516 (56%), Gaps = 46/516 (8%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+    ++HA I  +++L  +  +G  L+  Y  CG +   +  FD +  +N+V +N LI
Sbjct: 166 DLNMGIQIHALISKSRYL-LDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLI 224

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             Y  N     AL V+  M  +G +PD  T   V+ AC+  +++  GLQIH  VVK    
Sbjct: 225 TCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKY 284

Query: 163 YN-LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
            N L  GN LV MY KC  + EAR V + MP ++VV+  SMV GYA+             
Sbjct: 285 RNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYAR------------- 331

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
                                     +V + + MF  +  KN+VSWN +IA Y  N    
Sbjct: 332 ------------------------AASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENE 367

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL------QPNLR 335
           EAV L+L ++   I P   +  ++L AC +L+ L LGR+ H  + +         + ++ 
Sbjct: 368 EAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIF 427

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           + N+L+DMY KCG + +   VF++M  +DVVSW +MI  Y  +G G +A+ +F KML+SG
Sbjct: 428 VGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSG 487

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
             PD +  + VLSACSHAGL+EEGR YF  M  +  L P  +HF C+VDLLGRAG ++EA
Sbjct: 488 QKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEA 547

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
            DLI+ MPM+P+  +WGSL+AAC ++ N+++G   A+ +  + P  SG YVLLSN+YA+ 
Sbjct: 548 NDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAEL 607

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           GRW DV RVRK M  +G+ K PG S +E+  +V + 
Sbjct: 608 GRWKDVVRVRKQMRQRGVIKQPGCSWIEIQSRVHVF 643



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 162/336 (48%), Gaps = 37/336 (11%)

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D   +  +L +C  S S +   +IH  ++K      +F  N LV  YGKCG  ++AR+V 
Sbjct: 18  DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVF 77

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
           + MP ++  ++N++++   + G+ DEA +V + M      P+ D                
Sbjct: 78  DRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSM------PEPDQ--------------- 116

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
                            SWN M++ +A +    EA+  ++ M       N  S  S L A
Sbjct: 117 ----------------CSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSA 160

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  L+ L +G +IH  + + +   ++ + +ALVDMY+KCG +  A+  FD M  +++VSW
Sbjct: 161 CAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSW 220

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            S+I+ Y  +G    A+ +F  M+ +G+ PD I   SV+SAC+    + EG      + +
Sbjct: 221 NSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVK 280

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM 464
           + K    +     LVD+  +  +V EA  +  +MP+
Sbjct: 281 RDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL 316



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 138/560 (24%), Positives = 242/560 (43%), Gaps = 110/560 (19%)

Query: 29  LSGDACNDILDKYPDIKTL------------KKLHAQIIINQHLHSNPSIGLKLMRTYGA 76
           L G+ C   LD  P  K L            +++HA+II  Q   S   I  +L+  YG 
Sbjct: 10  LVGELC--FLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQ-FSSEIFIQNRLVDAYGK 66

Query: 77  CGQMVDTRHVFDEITNKNV---------------------VF----------FNVLIRSY 105
           CG   D R VFD +  +N                      VF          +N ++  +
Sbjct: 67  CGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGF 126

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
             +  + +AL  + +M    F  + Y++   L AC+G   L +G+QIH  + K     ++
Sbjct: 127 AQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDV 186

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           + G+ LV MY KCG +  A+R  + M  +++V+WNS++  Y QNG   +AL+V   M   
Sbjct: 187 YMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDN 246

Query: 226 RIKPDADTMASLLPSVTNTSP-ENVLSVKEMFLKLDN--KNLVSWNVMIAVYANNSMPAE 282
            ++PD  T+AS++ +  + S     L +    +K D    +LV  N ++ +YA      E
Sbjct: 247 GVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNE 306

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A  ++ +M +     N +S  S++  CG                                
Sbjct: 307 ARLVFDRMPLR----NVVSETSMV--CG-------------------------------- 328

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
            YA+  S+  AR +F  M  ++VVSW ++I+ Y  +G+  +AV LF  +    + P    
Sbjct: 329 -YARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYT 387

Query: 403 FVSVLSACSHAGLLEEGR----------YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
           F ++L+AC++   L+ GR          ++F+   E    V        L+D+  + G V
Sbjct: 388 FGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGN-----SLIDMYMKCGMV 442

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH--LAPNQSGYYVLLSN 510
           E+   + ++M +E +   W +++     Y+    G  A + IF   L   Q   +V +  
Sbjct: 443 EDGCLVFERM-VERDVVSWNAMIVG---YAQNGYGTNALE-IFRKMLVSGQKPDHVTMIG 497

Query: 511 IYAKAGRWGDVKRVRKFMNS 530
           + +     G V+  R++ +S
Sbjct: 498 VLSACSHAGLVEEGRRYFHS 517


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 183/489 (37%), Positives = 276/489 (56%), Gaps = 36/489 (7%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +N  +R       + +AL++Y  M   G  P+ +T+P   K+C+  +  L G Q+H  V+
Sbjct: 24  WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVI 83

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVL--NDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           K G +   F    L++MY KC  +  AR+V   N       V +N+++AGY+ N RF +A
Sbjct: 84  KTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDA 143

Query: 216 LDVCREMESLRIKPDADTMASLLP---------------------------SVTN----- 243
           + + R+M    +  +A TM  L+P                           SV N     
Sbjct: 144 VLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTM 203

Query: 244 -TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
                +V   +++F  +  K L++WN MI+ YA N +    +DLY +ME  GI P+ +++
Sbjct: 204 YVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTL 263

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
             VL +C  L A   GR++ + +E      N  L+NAL++MYA+CG+L +AR +FD M  
Sbjct: 264 VGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTE 323

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           ++V+SWT++I+ YGM GQG  AV LF +M+ S   PD  AFVSVLSACSHAGL E+G YY
Sbjct: 324 KNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYY 383

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           F  M   Y L P  EH++C+VDLLGRAG++EEA  LI  M +EP+  +WG+L+ AC ++ 
Sbjct: 384 FTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHR 443

Query: 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-V 541
           N+++  LA + +    P   GYYVLLSNI+++AG    + RVR  M  + +KK PG S V
Sbjct: 444 NVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYV 503

Query: 542 EMNDQVQII 550
           E   ++ + 
Sbjct: 504 EYQGRIHLF 512



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 185/422 (43%), Gaps = 42/422 (9%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN--VVFFNVLIRSYV 106
           +LH  +I        P +   L+  Y  C  +   R VFDE  +     V +N LI  Y 
Sbjct: 77  QLHGHVI-KTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYS 135

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
            N  + DA+ +++ M   G   +  T   ++  C+G   L  G  +H   V+ GLD +L 
Sbjct: 136 LNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLS 195

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
            GN L+ MY +CG +  AR++ + MP K ++TWN+M++GYAQNG     LD+ R+ME   
Sbjct: 196 VGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTG 255

Query: 227 IKPDADTMASLLPSVTNTSPE---------------------------------NVLSVK 253
           I PD  T+  +L S  +                                     N++  +
Sbjct: 256 IVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKAR 315

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
            +F  +  KN++SW  +IA Y  +     AV L+ +M      P+  +  SVL AC    
Sbjct: 316 AIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAG 375

Query: 314 ALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSM 371
               G      +ER   LQP     + +VD+  + G L EAR +   M  + D   W ++
Sbjct: 376 LTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGAL 435

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC-SHAGLLEEGRYYFKIMTEQY 430
           + A  +      A   F K++     P +I +  +LS   S AG + EG    ++M  + 
Sbjct: 436 LGACKIHRNVELAELAFEKVIE--FEPTNIGYYVLLSNIFSEAGNM-EGILRVRVMMRER 492

Query: 431 KL 432
           KL
Sbjct: 493 KL 494



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 5/236 (2%)

Query: 244 TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
           T P  +      +L L N    SWN  +   A      EA++LY QM   G  PNA +  
Sbjct: 2   TRPHPLFPYANKWLDLQNTT-ASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFP 60

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
               +C  LS  L G ++H +V +   +P   ++ +L+ MY KC ++  AR VFD+    
Sbjct: 61  FAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHS 120

Query: 364 D--VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
               V + ++I+ Y ++ +  DAV LF +M   G+  +++  + ++  C+    L  G  
Sbjct: 121 RNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGT- 179

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
                + ++ L   +    CL+ +  R G V+ A  L   MP E     W ++++ 
Sbjct: 180 SLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMP-EKGLITWNAMISG 234


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 185/552 (33%), Positives = 302/552 (54%), Gaps = 44/552 (7%)

Query: 33  ACNDILDKYPD-IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
           ACN     +P+ ++  KK+HA++       +   +G  ++  Y  CG M D   VFD + 
Sbjct: 321 ACN-----HPEALEQGKKVHARMK-EVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVK 374

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
            +NVV +  +I  +  +    +A   +  M   G +P+  T+  +L ACS  ++L  G Q
Sbjct: 375 GRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQ 434

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           I   +++ G   +      L++MY KCG LK+A RV   +  ++VV WN+M+  Y Q+ +
Sbjct: 435 IQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQ 494

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE------------------------ 247
           +D AL   + +    IKP++ T  S+L +V  +S                          
Sbjct: 495 YDNALATFQALLKEGIKPNSSTFTSIL-NVCKSSDSLELGKWVHFLIMKAGLESDLHVSN 553

Query: 248 ----------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297
                     +++S K +F  +  ++LVSWN +IA +  +     A D +  M+  GI+P
Sbjct: 554 ALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKP 613

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           + I+   +L AC    AL  GR++H  +       ++ +   L+ MY KCGS+ +A  VF
Sbjct: 614 DKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVF 673

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
            ++  ++V SWTSMI+ Y   G+G +A+ LF +M   G+ PD I FV  LSAC+HAGL+E
Sbjct: 674 HKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIE 733

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           EG ++F+ M E + + PR+EH+ C+VDL GRAG + EA + I +M +EP+ R+WG+L+ A
Sbjct: 734 EGLHHFQSMKE-FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGA 792

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
           C ++ N+++   AA     L PN +G +V+LSNIYA AG W +V ++RK M  +G+ K P
Sbjct: 793 CQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKP 852

Query: 538 GAS-VEMNDQVQ 548
           G S +E++ +V 
Sbjct: 853 GQSWIEVDGKVH 864



 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 237/453 (52%), Gaps = 43/453 (9%)

Query: 63  NPSIGLK--LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKN 120
            P I ++  L+  Y  CG  +  + +FD++  K+V  +N+L+  YV + LY +A  +++ 
Sbjct: 142 QPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQ 201

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M      PD  T+  +L AC+ + ++  G +++  ++K G D +LF G  L+ M+ KCG 
Sbjct: 202 MVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGD 261

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           + +A +V +++P++D+VTW SM+ G A++GRF +A ++ + ME   ++PD     SLL +
Sbjct: 262 IGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRA 321

Query: 241 VTNTSPENVLSVK-----------------------------------EMFLKLDNKNLV 265
             +  PE +   K                                   E+F  +  +N+V
Sbjct: 322 CNH--PEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVV 379

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           SW  MIA +A +    EA   + +M   GIEPN ++  S+L AC   SAL  G++I  ++
Sbjct: 380 SWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHI 439

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
                  + R+  AL+ MYAKCGSL +A  VF+++  Q+VV+W +MI+AY    Q  +A+
Sbjct: 440 IEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNAL 499

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVD 444
           A F  +L  G+ P+S  F S+L+ C  +  LE G++ +F IM  +  L   +     LV 
Sbjct: 500 ATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIM--KAGLESDLHVSNALVS 557

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           +    G +  A +L   MP + +   W +++A 
Sbjct: 558 MFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAG 589



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 211/429 (49%), Gaps = 47/429 (10%)

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
           TY  +L+ C    +L  G +I+  + K G+  ++F  N L+ MY KCG    A+++ +DM
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDM 171

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS 251
             KDV +WN ++ GY Q+G ++EA  +  +M    +KPD  T  S+L +  +    NV  
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADA--RNVDK 229

Query: 252 VKEM-----------------------------------FLKLDNKNLVSWNVMIAVYAN 276
            +E+                                   F  L  ++LV+W  MI   A 
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLAR 289

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           +    +A +L+ +ME  G++P+ ++  S+L AC    AL  G+K+H  ++       + +
Sbjct: 290 HGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYV 349

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
             A++ MY KCGS+ +A  VFD ++ ++VVSWT+MI+ +   G+  +A   F+KM+ SG+
Sbjct: 350 GTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGI 409

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYF-KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
            P+ + F+S+L ACS    L+ G+     I+   Y    R+     L+ +  + G +++A
Sbjct: 410 EPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDA 467

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH--LAPNQSGYYVLL----S 509
           + + +++  + N   W +++ A   +   D  +     +    + PN S +  +L    S
Sbjct: 468 HRVFEKISKQ-NVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKS 526

Query: 510 NIYAKAGRW 518
           +   + G+W
Sbjct: 527 SDSLELGKW 535



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 179/403 (44%), Gaps = 77/403 (19%)

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP-------------- 239
           KD    N+++   ++ G+F+EA+ V   ++S  I+    T ++LL               
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 240 ----SVTNTSPE---------------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                 +   P+               N +S K++F  +  K++ SWN+++  Y  + + 
Sbjct: 133 YNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            EA  L+ QM    ++P+  +  S+L AC D   +  GR+++  + +     +L +  AL
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           ++M+ KCG + +A  VFD +  +D+V+WTSMI+     G+   A  LF +M   G+ PD 
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTE---------------QYKLVPRIEHFACLVDL 445
           +AFVS+L AC+H   LE+G+     M E                Y     +E    + DL
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDL 372

Query: 446 ---------------LGRAGKVEEAYDLIKQM---PMEPNERIWGSLVAACCLYSNMDIG 487
                            + G+++EA+    +M    +EPN   + S++ AC   S +  G
Sbjct: 373 VKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRG 432

Query: 488 ILAADHIFHLAPNQSGY------YVLLSNIYAKAGRWGDVKRV 524
               DHI      ++GY         L ++YAK G   D  RV
Sbjct: 433 QQIQDHII-----EAGYGSDDRVRTALLSMYAKCGSLKDAHRV 470


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 180/546 (32%), Positives = 302/546 (55%), Gaps = 35/546 (6%)

Query: 45  KTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           K L  LHA  II+ +  SN  +G  L+  Y    ++V  R VFD +  ++ V +N +I  
Sbjct: 125 KHLMLLHAHSIIDGY-GSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMING 183

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
            V N  + D++ +++ M   G   D  T   VL A +    L VG+ I C  +K+G  + 
Sbjct: 184 LVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFC 243

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
            +   GL+++Y KCG +  AR +   +   D++ +N+M++G+  NG  + ++ + RE+  
Sbjct: 244 DYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLF 303

Query: 225 LRIKPDADTMASLLP-----------------------------SVTNTSPENVLS---- 251
              +  + T+  L+P                             S   T+  N L+    
Sbjct: 304 SGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDL 363

Query: 252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
            + +F +   K +V+WN MI+ Y  N     A+ L+ +M      PNA+++ ++L AC  
Sbjct: 364 ARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQ 423

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           L +L  G+ +H  ++ + L+PN+ +  ALVDMYAKCG+++EA  +FD M  ++ V+W +M
Sbjct: 424 LGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTM 483

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           I  YG+ G G++A+ L+++ML  G  P ++ F+SVL ACSHAGL+ EG   F  M  +Y+
Sbjct: 484 IFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYR 543

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
           + P IEH+AC+VD+LGR+G++E+A + IK+MP+EP   +WG+L+ AC ++ + DI  LA+
Sbjct: 544 IEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLAS 603

Query: 492 DHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           + +F L P   GYYVLLSNIY+    +     +R+ +  + + K PG + +E+N    + 
Sbjct: 604 ERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVF 663

Query: 551 ALPLRS 556
               RS
Sbjct: 664 VSGDRS 669



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 130/548 (23%), Positives = 250/548 (45%), Gaps = 43/548 (7%)

Query: 20  LVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQ 79
           ++L      LS +    +++K      L + HAQ I+N +     ++  KL +       
Sbjct: 1   MILGNSSGKLSRNTLFSLINKASTFPHLAQTHAQFILNGYRFDLATL-TKLTQKLFDFSA 59

Query: 80  MVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLK 138
               R +F  +   ++  FNVL+R +  N     ++ +Y ++  +    PD +TY   + 
Sbjct: 60  TRHARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVA 119

Query: 139 ACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVT 198
           ACS    L++   +H   +  G   N+F G+ LV +Y K   +  AR+V + MP +D V 
Sbjct: 120 ACSNDKHLML---LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVL 176

Query: 199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN--------------- 243
           WN+M+ G  +N  FD+++ + REM +  ++ D+ T+ ++LP+                  
Sbjct: 177 WNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLAL 236

Query: 244 ------------------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285
                             +   +V + + +F +++  +L+++N MI+ +  N     +V 
Sbjct: 237 KIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVK 296

Query: 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
           L+ ++   G   ++ ++  ++P       L L   IH +  +  +  N  +  A   +Y 
Sbjct: 297 LFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYN 356

Query: 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
           K   +  AR +FD+   + VV+W +MIS Y  +G    A++LF +M+ +   P+++   +
Sbjct: 357 KLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITT 416

Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME 465
           +LSAC+  G L  G++   ++  +  L P I     LVD+  + G + EA+ L   M  E
Sbjct: 417 ILSACAQLGSLSFGKWVHHLIKSE-NLEPNIYVSTALVDMYAKCGNISEAWQLFDSMS-E 474

Query: 466 PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA--KAGRWGDVKR 523
            N   W +++    L+      +   + + HL  N S     LS +YA   AG  G+ + 
Sbjct: 475 KNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSA-VTFLSVLYACSHAGLVGEGEE 533

Query: 524 VRKFMNSK 531
           +   M +K
Sbjct: 534 IFHNMVNK 541


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 192/550 (34%), Positives = 295/550 (53%), Gaps = 62/550 (11%)

Query: 8   CRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIG 67
           C+   T K +QAL+  T             L+ YP +     LH  + +   LH      
Sbjct: 15  CKSLRTVKQIQALIFKT------------CLNSYPLVSGKLLLHCAVTLPDSLHY----- 57

Query: 68  LKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD 127
                           R +F +I N +V  +N LIR   ++    +AL ++  M      
Sbjct: 58  ---------------ARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVA 102

Query: 128 -PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR 186
            PD +++  +LKA +   +L  GLQ+HC  V  GLD +LF G  L++MY +C CL  AR+
Sbjct: 103 LPDSFSFAFLLKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARK 162

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP 246
           V ++M   ++V WN++VA              C   E ++   DA+ +   +P + N + 
Sbjct: 163 VFDEMIEPNIVAWNAIVAA-------------CFRCEGVK---DAEQVFRCMP-IRNLTS 205

Query: 247 ENVLSV-----------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
            N++             +E+F+K+  K+ VSW+ MI  +A+N    +A   + ++   G+
Sbjct: 206 WNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGM 265

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
            PN +S+  VL AC    A   GR +H +VE+      + + NAL+D Y+KCG+L  AR 
Sbjct: 266 RPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARL 325

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           VFD M  +  VSWT+MI+   M G G +A+ LF++M  S + PDSI F+S+L ACSHAGL
Sbjct: 326 VFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGL 385

Query: 416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
           ++ G  YF  M   Y + P IEH+ C+VDL GRAGK+++AYD + QMP+ PN+ +W +L+
Sbjct: 386 VDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLL 445

Query: 476 AACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK 535
            AC ++ N+ +       +  L P  SG +VLLSNIYA AG+W DV  +R+ M  + +KK
Sbjct: 446 GACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKK 505

Query: 536 MPGAS-VEMN 544
            PG S +E+N
Sbjct: 506 TPGWSMIEVN 515


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 192/545 (35%), Positives = 307/545 (56%), Gaps = 49/545 (8%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLM---RTYGACGQM--VDTRHVFD---EITNKNV 95
           IK LK++HA II      + PS   +L    R    C Q   +D R+      ++   N+
Sbjct: 35  IKGLKQIHASII-----KTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPNL 89

Query: 96  VFFNVLIRSY-VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
             +N +IR    +N    + L VYK M   G  PD YT P VLKAC+ S ++  G ++H 
Sbjct: 90  PLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHG 149

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
             +K+GL  +++  N L+ MY  C  ++ AR+V +  P +D+V+W +M+ GY + G   E
Sbjct: 150 QAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFARE 209

Query: 215 ALDVCREMESLRIKPDADTMASLLPS----------------------------VTNTSP 246
            + +  EM    ++ D  T+  +L S                            V N   
Sbjct: 210 GVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALV 269

Query: 247 ENVLS------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
           +  L        +++F ++  KN+VSWN MI+  A      E++ ++ +M+  G++P+ +
Sbjct: 270 DMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDV 329

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           ++ +VL +C +L  L LG+ +H Y++R +++ +  + NALVDMYAKCGS+ +A  VF  M
Sbjct: 330 TLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAM 389

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             +DV S+T+MI    M GQG  A+ LFS+M   G+ PD + FV VL+ACSH GL+EEGR
Sbjct: 390 NRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGR 449

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
            YF+ M+  Y L P++EH+ C+VDLLGRAG + EA + I+ MP+EP+  + G+L+ AC +
Sbjct: 450 KYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKI 509

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-A 539
           +  +++G      I  + P + G YVL+SNIY+ A RW D  ++RK M  + ++K PG +
Sbjct: 510 HGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCS 569

Query: 540 SVEMN 544
           S+E++
Sbjct: 570 SIELD 574



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 8/293 (2%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++  +KLH  II N +++ +  +G  L+  Y  CG     R VF E+  KNVV +N +I
Sbjct: 241 DLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMI 300

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
                   + ++L++++ M   G  PD  T   VL +C+    L +G  +H  + +  + 
Sbjct: 301 SGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIR 360

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            + F GN LV MY KCG + +A  V   M  KDV ++ +M+ G A +G+  +ALD+  EM
Sbjct: 361 ADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEM 420

Query: 223 ESLRIKPDADTMASLLPSVTNTS--PENVLSVKEMFLKLDNK-NLVSWNVMIAVYANNSM 279
             + I+PD  T   +L + ++     E     ++M    + +  L  +  M+ +     +
Sbjct: 421 PKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGL 480

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
             EA +    M    IEP+A  + ++L AC     + LG  + + +E  K++P
Sbjct: 481 INEAEEFIRNMP---IEPDAFVLGALLGACKIHGKVELGESVMKKIE--KIEP 528


>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
 gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
          Length = 705

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 185/563 (32%), Positives = 311/563 (55%), Gaps = 76/563 (13%)

Query: 48  KKLHAQII---INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           K LH  ++      HLH    +G +L+  Y    +M D R VFD++  K+VV +N ++  
Sbjct: 159 KNLHCHVVQFGFQNHLH----VGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSG 214

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTY------------------------------- 133
           Y  NY    A  ++  M + G +P+  T+                               
Sbjct: 215 YAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLFCKMRMKGVGPT 274

Query: 134 ----PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
                 VL  C+   +L  G  IH  +VK G +  LF  N L+ +YGK G + +A ++ +
Sbjct: 275 AEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFH 334

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
           +M  K++V+WN++++ +A++G +D+AL++  ++E +   P+                   
Sbjct: 335 EMKVKNLVSWNALISSFAESGVYDKALELLSQLEKMEAYPEM------------------ 376

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                        N+++W+ +I  +A+  +  E+++++ +M++  ++ N++++ASVL  C
Sbjct: 377 -----------KPNVITWSAIICGFASKGLGEESLEVFRKMQLANVKANSVTIASVLSIC 425

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L+AL LGR++H +V R ++  N+ + N L++MY KCGS      VF+++  +D +SW 
Sbjct: 426 AMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLENRDSISWN 485

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           SMI+ YG  G G DA+A F+ M+ SG  PD + F++ LSACSHAGL+ EG + F  M + 
Sbjct: 486 SMIAGYGTHGLGKDALATFNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLFSQMRQN 545

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           +K+ P IEH+AC+VDLLGRAG VEEA ++IK MPMEPN  IW SL+ +C ++ + D+   
Sbjct: 546 FKIEPEIEHYACMVDLLGRAGLVEEASNIIKGMPMEPNAYIWSSLLNSCRMHKDTDLAEE 605

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           AA  I +L    +G ++LLSNI+A + RW D  RVR    +KG+KK+PG S +E+  +V 
Sbjct: 606 AAAKISNLNSKITGSHMLLSNIFAASCRWEDSARVRISARAKGLKKVPGWSWIEVKKKVY 665

Query: 549 IIALPLRSSKCLTTGPKNVPPIV 571
           +     ++   ++ G + V  I+
Sbjct: 666 M----FKAGYTISEGLEKVDEIL 684



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 195/402 (48%), Gaps = 41/402 (10%)

Query: 32  DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
           D  + +L +   I+  K++H+  ++    + +  +  +L+  Y   G + D R VF    
Sbjct: 39  DFFDHLLRQCNGIQHSKQVHSATVVTG-AYCSAFVSARLVSIYSRYGLVSDARKVFGSAP 97

Query: 92  NK---NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLV 148
            +   N + +N +IR+ V +    +AL +Y  M  +G   D +T+P +L+A S   +  +
Sbjct: 98  FECYSNFLLWNSIIRANVYHGYCIEALQLYGKMRNYGVLGDGFTFPLLLRASSNLGAFNM 157

Query: 149 GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
              +HC VV+ G   +L  GN L+ MY K   + +AR+V + M  K VV+WN+MV+GYA 
Sbjct: 158 CKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAY 217

Query: 209 NGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWN 268
           N   + A  +  +ME   ++P                                 N V+W 
Sbjct: 218 NYDVNGASRMFHQMELEGVEP---------------------------------NPVTWT 244

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
            +++ +A      E + L+ +M + G+ P A  +A VL  C DL+ L  G+ IH Y+ + 
Sbjct: 245 SLLSSHARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKG 304

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
                L  +NAL+ +Y K G + +A  +F +M+ +++VSW ++IS++  SG    A+ L 
Sbjct: 305 GFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDKALELL 364

Query: 389 SKM----LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           S++        + P+ I + +++   +  GL EE    F+ M
Sbjct: 365 SQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKM 406


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 184/511 (36%), Positives = 271/511 (53%), Gaps = 48/511 (9%)

Query: 36  DILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI----- 90
           D+L  +     L+++HAQII      +N  + +  +   G       + H   +I     
Sbjct: 33  DLLRNFNSPFELRQVHAQII-----KTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVE 87

Query: 91  -TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG 149
                   +N  +++        DA+ ++  +  +   PD +T   VL+AC     L  G
Sbjct: 88  KQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNG 147

Query: 150 LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQN 209
             +H  V KVG   NL+  N +V +Y  CG + EAR +   MP +DVVTWN M+A   + 
Sbjct: 148 RILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQ 207

Query: 210 GRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNV 269
           G  + A D                                     +F ++  +N+ SW  
Sbjct: 208 GDHEGAYD-------------------------------------LFSRMPERNVRSWTS 230

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           MIA Y       EA+ L+ +ME  G++ N ++V +VL AC DL AL LG +IH Y  R  
Sbjct: 231 MIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHG 290

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
            + N+R+ N L+DMY KCG L EA  VF++M  + VVSW++MI    M G+  +A+ LFS
Sbjct: 291 FKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFS 350

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
            M   G+ P+ + F+ +L ACSH GL+ EGR +F  MT  Y ++P+IEH+ C+VDLL RA
Sbjct: 351 DMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRA 410

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G + EA++ I  MPM+PN  +WG+L+ AC ++ N+++   A  H+  L P   GYYV+LS
Sbjct: 411 GLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLS 470

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           NIYA+AGRW D  RVRKFM  + +KK PG S
Sbjct: 471 NIYAEAGRWEDTARVRKFMKDRQVKKTPGWS 501


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 179/536 (33%), Positives = 303/536 (56%), Gaps = 35/536 (6%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +LH  I +   L  +  +   L+  Y  C  +   R +FD +   ++V +N +I  YV N
Sbjct: 180 QLHG-IAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQN 238

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
            L  +A H+++ M   G  PD  T+   L   +   SL    +IH  +++  +  ++F  
Sbjct: 239 GLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLK 298

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           + L+ +Y KC  ++ A++ L    S D V   +M++GY  NG+  EAL+  R +   R+K
Sbjct: 299 SALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMK 358

Query: 229 PDADTMASLLPSVTNTSPEN--------VLSVK-------------------------EM 255
           P + T +S+ P+    +  N        ++  K                          +
Sbjct: 359 PTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRV 418

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F ++  K+ + WN MI   + N  P EA++L+ QM + G   + +S++  L AC +L AL
Sbjct: 419 FNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPAL 478

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             G++IH  + +  L+ +L  E++L+DMYAKCG+L  +R VFD+M+ ++ VSW S+ISAY
Sbjct: 479 HYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAY 538

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
           G  G   + +ALF +ML +G+ PD + F+ ++SAC HAG ++EG  Y+ +MTE+Y +  R
Sbjct: 539 GNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPAR 598

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
           +EH+AC+ D+ GRAG++ EA++ I  MP  P+  +WG+L+ AC ++ N+++  +A+ H+F
Sbjct: 599 MEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLF 658

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            L P  SGYYVLL+N+ A AG+W  V +VR  M  +G++K+PG S +E+N+   + 
Sbjct: 659 DLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATHMF 714



 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 137/450 (30%), Positives = 230/450 (51%), Gaps = 45/450 (10%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L++ Y   G + D +++FD I  K+ V +NV++  YV N    +A+ ++  M    
Sbjct: 95  VGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSE 154

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             P+  T+ CVL  C+    L +G Q+H   V  GL+ +    N L+AMY KC CL+ AR
Sbjct: 155 IKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAAR 214

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           ++ + +P  D+V+WN +++GY QNG   EA  + R M S  IKPD+ T AS LP V    
Sbjct: 215 KLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVN--- 271

Query: 246 PENVLSVK----------------EMFLK--------------LDNKNL--------VSW 267
              +LS+K                ++FLK              +  KNL        V  
Sbjct: 272 --ELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVC 329

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
             MI+ Y  N    EA++ +  +    ++P +++ +S+ PA   L+AL LG+++H  + +
Sbjct: 330 TTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIK 389

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
            KL     + +A++DMYAKCG L  A  VF+++  +D + W SMI++   +G+  +A+ L
Sbjct: 390 TKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINL 449

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           F +M M G   D ++    LSAC++   L  G+    +M +   L   +   + L+D+  
Sbjct: 450 FRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKG-PLRSDLYAESSLIDMYA 508

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           + G +  +  +  +M  E NE  W S+++A
Sbjct: 509 KCGNLNFSRRVFDRM-QEKNEVSWNSIISA 537



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/438 (27%), Positives = 216/438 (49%), Gaps = 35/438 (7%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y   G + D +++F  +       +N +IR +     +  AL  Y  M   G  PD YT+
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
           P V+KAC G  S+ +G  +H +V  +GL  ++F G+ L+ +Y + G L +A+ + +++P 
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL--------------- 238
           KD V WN M+ GY +NG    A+ +  EM    IKP++ T A +L               
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL 181

Query: 239 ------------PSVTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                         V NT        + + + +++F  L   +LVSWN +I+ Y  N + 
Sbjct: 182 HGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLM 241

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            EA  L+  M   GI+P++I+ AS LP   +L +L   ++IH Y+ R  +  ++ L++AL
Sbjct: 242 GEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSAL 301

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +D+Y KC  +  A+    Q    D V  T+MIS Y ++G+  +A+  F  ++   + P S
Sbjct: 302 IDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTS 361

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           + F S+  A +    L  G+     + +  KL  +    + ++D+  + G+++ A  +  
Sbjct: 362 VTFSSIFPAFAGLAALNLGKELHGSIIKT-KLDEKCHVGSAILDMYAKCGRLDLACRVFN 420

Query: 461 QMPMEPNERIWGSLVAAC 478
           ++  E +   W S++ +C
Sbjct: 421 RIT-EKDAICWNSMITSC 437



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 8/132 (6%)

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MY + GSL +A+ +F  ++     +W  MI  + M GQ   A+  + KML +G+ PD   
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF---ACLVDLLGRAGKVEEAYDLI 459
           F  V+ AC     ++ G    KI+ E   L+   E     + L+ L    G + +A  L 
Sbjct: 61  FPYVVKACCGLKSVKMG----KIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLF 116

Query: 460 KQMPMEPNERIW 471
             +P + +  +W
Sbjct: 117 DNIP-QKDSVLW 127


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 185/515 (35%), Positives = 288/515 (55%), Gaps = 52/515 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  CG +   + +FDE  ++N+V +N ++ +Y    L  +AL +   M   G  PD
Sbjct: 273 LVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPD 332

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T    + A +    L  G   H  V++ GL+     GN ++ MY KCG  + A RV +
Sbjct: 333 RVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFD 392

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            M +K VV+WNS+ AG+ +NG                                     +V
Sbjct: 393 LMSNKTVVSWNSLTAGFIRNG-------------------------------------DV 415

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            S  E+F ++  +N V WN MI+     S+  +A++L+ +M+  GI+ + +++  +  AC
Sbjct: 416 ESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASAC 475

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
           G L A  L + +H Y+E+  +  ++RL  ALVDM+A+CG    A  VF++M  +DV +WT
Sbjct: 476 GYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWT 535

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           + I    M G G  A  LF++ML+ G+ PD + FV VL+ACSH G +E+G + F +M E 
Sbjct: 536 AAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLM-ED 594

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           + + P+IEH+ C+VDLLGRAG + EA+DLIK MPMEPN+ +WGSL+AAC ++ N+++   
Sbjct: 595 HGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATY 654

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV-------- 541
           AA+ I  LAP ++G +VLLSNIYA AG+W DV RVR  +  KG++K+PG+S         
Sbjct: 655 AAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIH 714

Query: 542 ------EMNDQVQIIALPLRSSKCLTTGPKNVPPI 570
                 E + ++  IAL L+   C  +   ++P +
Sbjct: 715 EFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDL 749



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 135/524 (25%), Positives = 233/524 (44%), Gaps = 101/524 (19%)

Query: 29  LSGDAC-NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG--ACGQMVD-TR 84
           ++ D+C N+ L     +  LK+LH QI  N  L   PS   KL+      A  + +D  R
Sbjct: 22  MTKDSCLNESLRCCKTLNQLKQLHCQITKNG-LDQIPSTLTKLVNAGAEIASPESLDYAR 80

Query: 85  HVFD----EITNKNVVF-FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA 139
             F+    ++ + + +F  N LIR Y +  L  +A+ +Y  M V G  P+ YT+P VL  
Sbjct: 81  KAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSG 140

Query: 140 CSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTW 199
           C+   +   G+Q+H SVVK+GL+                               +DV   
Sbjct: 141 CTKIAAFCEGIQVHGSVVKMGLE-------------------------------EDVFIQ 169

Query: 200 NSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKL 259
           N ++  YA+ G  D                                        ++F  +
Sbjct: 170 NCLIHFYAECGHMDHG-------------------------------------HKVFEGM 192

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
             +N+VSW  +I  YA    P EAV L+ +M   GI P+++++  V+ AC  L  L +G 
Sbjct: 193 SERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGE 252

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
           ++  Y+    L+ N  + NALVDMY KCG++  A+ +FD+   +++V + +++S Y   G
Sbjct: 253 RVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQG 312

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YYFKIMTEQYKLVPR 435
              +A+A+  +ML  G  PD +  +S +SA +    L  G+    Y  +   E +  +  
Sbjct: 313 LAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGN 372

Query: 436 IEHFACLVDLLGRAGKVEEA---YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAAD 492
           +     ++D+  + GK E A   +DL+    +      W SL A      N D+   +A 
Sbjct: 373 V-----IIDMYMKCGKPEMACRVFDLMSNKTVVS----WNSLTAG--FIRNGDVE--SAW 419

Query: 493 HIFHLAPNQSGYY--VLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534
            +F+  P ++  +   ++S +  K+  + D   + + M  +GIK
Sbjct: 420 EVFNQIPERNAVFWNTMISGLVQKS-LFEDAIELFREMQGEGIK 462


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 186/486 (38%), Positives = 275/486 (56%), Gaps = 44/486 (9%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S+  IG  L+  Y  CG + D + VFDE+ ++NVV +N LI  +  N    +AL V++ M
Sbjct: 185 SDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMM 244

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGC 180
                +PD  T   V+ AC+  +++ VG ++H  VVK   L  ++   N  V MY KC  
Sbjct: 245 LESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSR 304

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           +KEAR + + MP ++V+   SM++GYA                       A T A+ L  
Sbjct: 305 IKEARFIFDSMPIRNVIAETSMISGYAMA---------------------ASTKAARL-- 341

Query: 241 VTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                         MF K+  +N+VSWN +IA Y  N    EA+ L+  ++   + P   
Sbjct: 342 --------------MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHY 387

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKL------QPNLRLENALVDMYAKCGSLTEAR 354
           S A++L AC DL+ L LG + H +V +         + ++ + N+L+DMY KCG + E  
Sbjct: 388 SFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGY 447

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            VF +M  +D VSW +MI  +  +G G +A+ LF +ML SG  PD I  + VLSAC HAG
Sbjct: 448 LVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAG 507

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
            +EEGR+YF  MT  + + P  +H+ C+VDLLGRAG +EEA  +I++MPM+P+  IWGSL
Sbjct: 508 FVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSL 567

Query: 475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534
           +AAC ++ N+ +G   A+ +  + P+ SG YVLLSN+YA+ G+W DV  VRK M  +G+ 
Sbjct: 568 LAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVT 627

Query: 535 KMPGAS 540
           K PG S
Sbjct: 628 KQPGCS 633



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 157/313 (50%), Gaps = 37/313 (11%)

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H SV+K G    +F  N L+  Y KCG L++ R+V + MP +++ TWNS+V G  + G 
Sbjct: 42  VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
            DEA  + R M                       PE              ++  +WN M+
Sbjct: 102 LDEADSLFRSM-----------------------PE--------------RDQCTWNSMV 124

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           + +A +    EA+  +  M   G   N  S ASVL AC  L+ +  G ++H  + +    
Sbjct: 125 SGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFL 184

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            ++ + +ALVDMY+KCG++ +A+ VFD+M  ++VVSW S+I+ +  +G   +A+ +F  M
Sbjct: 185 SDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMM 244

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
           L S + PD +   SV+SAC+    ++ G+     + +  KL   I      VD+  +  +
Sbjct: 245 LESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSR 304

Query: 452 VEEAYDLIKQMPM 464
           ++EA  +   MP+
Sbjct: 305 IKEARFIFDSMPI 317


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 182/463 (39%), Positives = 266/463 (57%), Gaps = 39/463 (8%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G +   R VF++I N      N +IR Y N  L   A+  Y+ M + G DPD +T+P + 
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 85

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
           K+C     L  G Q+HC   K+G   + +  N L+ MY  CGCL  AR+V + M +K VV
Sbjct: 86  KSCG---VLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVV 142

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
           +W +M+  YAQ     EA+ + R ME          +AS                     
Sbjct: 143 SWATMIGAYAQWDLPHEAIKLFRRME----------IAS--------------------- 171

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
                NL  WN+MI  +  +S   EA+ L+ +M++ G++ + +++AS+L AC  L AL L
Sbjct: 172 -----NLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALEL 226

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           G+ +H Y+E++K++ ++ L  ALVDMYAKCGS+  A  VF +M  +DV++WT++I    M
Sbjct: 227 GKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAM 286

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
            GQG  A+ LF +M MS + PD+I FV VL+ACSHAGL+ EG  YF  M  +Y + P IE
Sbjct: 287 CGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIE 346

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHL 497
           H+ C+VD+LGRAG++ EA DLI+ MPM P+  +   L++AC ++ N+ +   AA  +  L
Sbjct: 347 HYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIEL 406

Query: 498 APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            P   G YVLLSNIY+    W   K++R+ M  + IKK PG S
Sbjct: 407 DPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCS 449



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 130/285 (45%), Gaps = 42/285 (14%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF------------------------ 97
           S+  I   LM  Y  CG +V  R VFD++ NK+VV                         
Sbjct: 108 SDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRM 167

Query: 98  --------FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG 149
                   +N++I  +V +  Y +AL ++  M + G   D  T   +L AC+   +L +G
Sbjct: 168 EIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG 227

Query: 150 LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQN 209
             +H  + K  ++ ++  G  LV MY KCG ++ A RV  +MP KDV+TW +++ G A  
Sbjct: 228 KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMC 287

Query: 210 GRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK-----NL 264
           G+  +AL++  EM+   +KPDA T   +L + ++    N       F  + NK     ++
Sbjct: 288 GQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVN--EGIAYFNSMPNKYGIQPSI 345

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
             +  M+ +       AEA DL   M    + P+   +  +L AC
Sbjct: 346 EHYGCMVDMLGRAGRIAEAEDLIQNMP---MAPDYFVLVGLLSAC 387



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 2/146 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K LH   I  + +  + ++G  L+  Y  CG +     VF E+  K+V+ +  LI     
Sbjct: 228 KWLHV-YIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAM 286

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV-KVGLDYNLF 166
                 AL ++  M +    PD  T+  VL ACS +  +  G+    S+  K G+  ++ 
Sbjct: 287 CGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIE 346

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMP 192
           +   +V M G+ G + EA  ++ +MP
Sbjct: 347 HYGCMVDMLGRAGRIAEAEDLIQNMP 372


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 187/543 (34%), Positives = 307/543 (56%), Gaps = 30/543 (5%)

Query: 27  TLLSGDACNDI---LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT 83
           TL S D  + I   L       TL+++HA+II  + LH +  I  + +    +      T
Sbjct: 18  TLRSFDTTSSISTLLKACTTTSTLEQVHARII-RKGLHQDHFIISQFLTLCNSLSNFSYT 76

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
             VF+ +++ + V +N  I+ Y  NY     + ++  M      PD +TYP ++KACS  
Sbjct: 77  TSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKV 136

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
             +  G+  H S V+ G+  ++F    L+ +YGKCG +  AR+V ++M  ++VV+W +M+
Sbjct: 137 CGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMI 196

Query: 204 AGYAQNGRFDEALDV---------------------CREMESLRIKPDADTMASLLPSVT 242
           AGYA      EA  +                     C ++ S R   D     +++   T
Sbjct: 197 AGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTT 256

Query: 243 ----NTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                    ++ S + +F +   +++V+W+ +I+ Y  N  P EAV ++L+M    ++P+
Sbjct: 257 MIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPD 316

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPN-LRLENALVDMYAKCGSLTEARTVF 357
              + S++ AC  + +L L + +  YV +  +  +   +  AL+DM AKCGS+  A  +F
Sbjct: 317 EFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLF 376

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           ++M  +D++S+ SM+    + G G  AV+LFS+ML  GL PD +AF  +L+ACS AGL++
Sbjct: 377 EEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVD 436

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           EG YYF+ M   Y +VP  +H+AC+VDLLGRAG+++EAY+L+K MP+EP+   WG+L+ A
Sbjct: 437 EGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGA 496

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
           C L+ ++++G + AD +F L P  +G YVLLSNIYA A +W DV  +R  M  +GI+K+P
Sbjct: 497 CKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIP 556

Query: 538 GAS 540
           G S
Sbjct: 557 GCS 559


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 195/528 (36%), Positives = 293/528 (55%), Gaps = 19/528 (3%)

Query: 23  STQYTLLSGDACNDILDKY--PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACG-- 78
           ST+ + LS  A   +L+      +  LK+ HA I+   HL  +  I   L+++Y      
Sbjct: 25  STETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQ-DSYIAGSLVKSYANVSTN 83

Query: 79  ---QMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC 135
                  +  VFD +   NV  +N +I+  + N   + A+ +Y  M V    P+ YTYP 
Sbjct: 84  RYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPA 143

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK- 194
           VLKACS S  +  G+Q+H  +VK GL  +    +  + MY   G L EARR+L+D   + 
Sbjct: 144 VLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEV 203

Query: 195 DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSV-K 253
           D V WN+M+ GY + G  + A ++   M      PD   +++    ++  S   ++ V +
Sbjct: 204 DAVCWNAMIDGYLRFGEVEAARELFEGM------PDRSMISTWNAMISGFSRCGMVEVAR 257

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           E F ++  ++ +SW+ MI  Y       EA++++ QM+   I P    + SVL AC +L 
Sbjct: 258 EFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLG 317

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           AL  GR IH Y +R  +Q +  L  +LVDMYAKCG +  A  VF++M  ++V SW +MI 
Sbjct: 318 ALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIG 377

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
              M G+  DA+ LFSKM    + P+ I FV VL+AC+H GL+++G   F  M ++Y + 
Sbjct: 378 GLAMHGRAEDAIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVE 434

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P+IEH+ C+VDLLGRAG + EA  ++  +P EP   +WG+L+ AC  + N+++G      
Sbjct: 435 PQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKI 494

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           +  L P  SG Y LLSNIYAKAGRW +V  VRK M  +GIK  PG S+
Sbjct: 495 LLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSI 542


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 192/534 (35%), Positives = 292/534 (54%), Gaps = 37/534 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+ T + +HAQ+   + L         L   Y  C +  D R VFD +  ++ V +N L+
Sbjct: 240 DLATGRAVHAQLAA-RGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALV 298

Query: 103 RSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
             Y  N L   A+ +   M    G  PD  T   VL AC+ + +L    ++H   V+ G 
Sbjct: 299 AGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGF 358

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           D  +     ++ +Y KCG +  AR+V + M  ++ V+WN+M+ GYA+NG   EAL + + 
Sbjct: 359 DEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKR 418

Query: 222 M--ESLRIKPDADTMASL------------------LPSVTNTSPENVLSV--------- 252
           M  E + +  D   +A+L                  L  +   S  NV++          
Sbjct: 419 MVGEGVDVT-DVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCK 477

Query: 253 -----KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                 ++F +L  K  VSWN MI     N    +AV L+ +M++  ++P++ ++ S++P
Sbjct: 478 RTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIP 537

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           A  D+S  L  R IH Y  R  L  ++ +  AL+DMYAKCG ++ AR++F+  R + V++
Sbjct: 538 ALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVIT 597

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W +MI  YG  G G  AV LF +M  SG  P+   F+SVLSACSHAGL++EG+ YF  M 
Sbjct: 598 WNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMK 657

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
           E Y L P +EH+  +VDLLGRAGK+ EA+  I++MPMEP   ++G+++ AC L+ N+++ 
Sbjct: 658 EDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELA 717

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
             +A  IF L P +  Y+VLL+NIYA A  W DV RVR  M  KG++K PG S+
Sbjct: 718 EESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSI 771



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 141/495 (28%), Positives = 217/495 (43%), Gaps = 80/495 (16%)

Query: 114 ALHVYKNMS-VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV 172
           AL  +  MS   G  P   T+  +LK C+    L  G  +H  +   GL         L 
Sbjct: 208 ALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALA 267

Query: 173 AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD-VCREMESLRIKPDA 231
            MY KC    +ARRV + MP++D V WN++VAGYA+NG  + A+  V R  E    +PDA
Sbjct: 268 NMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDA 327

Query: 232 DTMASLLPSVTNTSPEN---------------------------------VLSVKEMFLK 258
            T+ S+LP+  +                                      V S +++F  
Sbjct: 328 VTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDG 387

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           + ++N VSWN MI  YA N    EA+ L+ +M   G++   +SV + L ACG+L  L  G
Sbjct: 388 MQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEG 447

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           R++H  + R  L+ N+ + NAL+ MY KC     A  VFD++  +  VSW +MI     +
Sbjct: 448 RRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQN 507

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YYFKIMTEQ--YKL 432
           G   DAV LFS+M +  + PDS   VS++ A +      + R    Y  ++  +Q  Y L
Sbjct: 508 GSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVL 567

Query: 433 VPRIEHFA------------------------CLVDLLGRAGKVEEAYDLIKQMPME--- 465
              I+ +A                         ++   G  G  + A +L ++M      
Sbjct: 568 TALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKV 627

Query: 466 PNERIWGSLVAACCLYSNMDIG---ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
           PNE  + S+++AC     +D G     +    + L P    Y  ++  +    GR G + 
Sbjct: 628 PNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLL----GRAGKLH 683

Query: 523 RVRKFMNSKGIKKMP 537
               F     I+KMP
Sbjct: 684 EAWSF-----IQKMP 693


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 185/509 (36%), Positives = 283/509 (55%), Gaps = 37/509 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G++   R+VFD + N++V+ +N +I  Y  N    DAL ++  M   G DPD
Sbjct: 158 LLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPD 217

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   +L  C     L +G  +H  V +  L   +   N LV MY KCG + EAR V  
Sbjct: 218 HATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFG 277

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN- 248
            M  +DV+TW  M+ GY ++G  + AL++CR M+   ++P+A T+ASL+ +  +    N 
Sbjct: 278 RMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALKLND 337

Query: 249 -------------------VLSVKEMFLKLDNKNLV-------------SWNVMIAVYAN 276
                                S+  M+ K  + +L               W+ +IA    
Sbjct: 338 GKCLHGWAIRQKVCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQ 397

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N +  +A+DL+ +M    +EPN  ++ S+LPA   L+ L     IH Y+ +     +L  
Sbjct: 398 NELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSSLDA 457

Query: 337 ENALVDMYAKCGSLTEARTVF----DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
              LV +Y+KCG+L  A  +F    ++ + +DVV W ++IS YGM G G++A+ +F +M+
Sbjct: 458 ATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMV 517

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
            SG+ P+ I F S L+ACSH+GL+EEG   F  M E YK + R  H+ C+VDLLGRAG++
Sbjct: 518 RSGVTPNEITFTSALNACSHSGLVEEGLTLFSFMLEHYKTLARSNHYTCIVDLLGRAGRL 577

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
           +EAY+LI  +P EP   IWG+L+AAC  + N+ +G +AA+ +F L P  +G YVLL+NIY
Sbjct: 578 DEAYNLITTIPFEPTSTIWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIY 637

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           A  GRW D+++VR  M + G++K PG S 
Sbjct: 638 AALGRWKDMEKVRNMMENVGLRKKPGHST 666



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/482 (26%), Positives = 237/482 (49%), Gaps = 49/482 (10%)

Query: 44  IKTLKKLHAQII----INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           I   K LH  +I    ++ H+ S  S+      TY  CG +   R +FDE+   +++ +N
Sbjct: 31  ISKTKALHCHVITGGRVSGHILSTLSV------TYALCGHIAYARKLFDEMPQSSLLSYN 84

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFD--PDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           ++IR YV + LY+DA++V+  M   G    PD YTYP V KA     S+ +GL IH  ++
Sbjct: 85  IVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAGELKSISLGLVIHGRIL 144

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           +     + +  N L+AMY   G ++ AR V + M ++DV++WN+M++GY +NG  ++AL 
Sbjct: 145 RSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALM 204

Query: 218 VCREMESLRIKPDADTMASLLP------------SVTNTSPENVLSVK--------EMFL 257
           +   M +  + PD  T+ S+LP            +V     E  L  K         M+L
Sbjct: 205 MFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYL 264

Query: 258 K-------------LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
           K             ++ +++++W  MI  Y  +     A++L   M+  G+ PNA+++AS
Sbjct: 265 KCGRMDEARFVFGRMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIAS 324

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           ++ ACGD   L  G+ +H +  R+K+  ++ +E +L+ MYAKC  +     VF       
Sbjct: 325 LVSACGDALKLNDGKCLHGWAIRQKVCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNH 384

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
              W+++I+    +    DA+ LF +M    + P+     S+L A +    L +      
Sbjct: 385 TGPWSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHC 444

Query: 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL---IKQMPMEPNERIWGSLVAACCLY 481
            +T+    +  ++    LV +  + G +E A+ +   I++     +  +WG+L++   ++
Sbjct: 445 YLTKT-GFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMH 503

Query: 482 SN 483
            +
Sbjct: 504 GD 505



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 110/244 (45%), Gaps = 17/244 (6%)

Query: 7   LCR--HFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNP 64
           LCR   F   +P    + S    L+S  AC D L K  D K L        I Q + S+ 
Sbjct: 306 LCRLMQFEGVRPNAVTIAS----LVS--ACGDAL-KLNDGKCLHGW----AIRQKVCSDI 354

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
            I   L+  Y  C  +     VF   +  +   ++ +I   V N L  DAL ++K M   
Sbjct: 355 IIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRRE 414

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
             +P+  T   +L A +    L   + IHC + K G   +L    GLV +Y KCG L+ A
Sbjct: 415 DVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESA 474

Query: 185 RRVLNDM----PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
            ++ N +     SKDVV W ++++GY  +G    AL V  EM    + P+  T  S L +
Sbjct: 475 HKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNA 534

Query: 241 VTNT 244
            +++
Sbjct: 535 CSHS 538


>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 597

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 181/534 (33%), Positives = 296/534 (55%), Gaps = 35/534 (6%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
            D+K    +H+ II N    SN  +  KL+  Y   G+ ++ R VFD +  +NVV +   
Sbjct: 51  EDLKQGCLIHSHIIRNG-FDSNLHLSTKLIIFYVKFGETINARKVFDRMPERNVVSWTAQ 109

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           I  Y  N  Y DAL V+  M   G   + +TY  VL+AC+G   L  G+QIH  + K   
Sbjct: 110 ISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQIHGCIQKNRF 169

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             NLF  + LV ++ KCG +++AR +   M  +DVV+WN+++ GYA     D++  +   
Sbjct: 170 IGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYAAQDFNDDSFRMFYS 229

Query: 222 MESLRIKPDADTMASLLPSVTNTS---------------------------------PEN 248
           M    + PD  T+ S+L + +  +                                  E 
Sbjct: 230 MMGEGVTPDCFTLGSVLKASSRANNLIKVCQIHGIIIQLGFGSHIDLNGSLIDAYAKSEG 289

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANN-SMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
           + S   ++  +  K+++S+  ++  YA   S   EA+DL+  M+   +E + ++  ++L 
Sbjct: 290 MKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKDMQHIFMEIDDVTFCTMLN 349

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
            C D+++L +GR+IH    + K   ++   NALVDMYAK G + +A   F +M+ ++V+S
Sbjct: 350 VCADIASLSIGRQIHALAIKYKPSYDVATGNALVDMYAKSGEIEDATRAFYEMKEKNVIS 409

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           WTS+I+ YG  G G++A+AL+ KM   GL P+ I F+S+L ACSH+GL  EG   F  M 
Sbjct: 410 WTSLITGYGKHGYGHEAIALYKKMEYEGLKPNDITFLSLLFACSHSGLTGEGWECFNNMI 469

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
            +Y ++PR EH++C++DL  R G++EEAY++I +M ++PN  +WG+++ AC +Y +M +G
Sbjct: 470 TKYNILPRAEHYSCMIDLFARGGQLEEAYNMICKMNIKPNSSLWGAILGACSIYGHMSLG 529

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
            +AA H+  + P  S  YV+L+ IYA +G W    R+R  M  + +KK+PG S+
Sbjct: 530 EVAATHLLRMDPENSANYVVLAGIYAASGSWDKACRMRNLMEYRSLKKIPGYSI 583



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 173/379 (45%), Gaps = 36/379 (9%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           Y  +L+ C  +  L  G  IH  +++ G D NL     L+  Y K G    AR+V + MP
Sbjct: 40  YMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMP 99

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT---------- 242
            ++VV+W + ++GYA+NG + +AL V  +M    ++ +  T  S+L + T          
Sbjct: 100 ERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQ 159

Query: 243 -----------------------NTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSM 279
                                  ++   N+   + +F  +  +++VSWN +I  YA    
Sbjct: 160 IHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYAAQDF 219

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
             ++  ++  M   G+ P+  ++ SVL A    + L+   +IH  + +     ++ L  +
Sbjct: 220 NDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQIHGIIIQLGFGSHIDLNGS 279

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS-GQGYDAVALFSKMLMSGLCP 398
           L+D YAK   +  A  ++  M  +DV+S+T++++ Y        +A+ LF  M    +  
Sbjct: 280 LIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKDMQHIFMEI 339

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           D + F ++L+ C+    L  GR     +  +YK    +     LVD+  ++G++E+A   
Sbjct: 340 DDVTFCTMLNVCADIASLSIGR-QIHALAIKYKPSYDVATGNALVDMYAKSGEIEDATRA 398

Query: 459 IKQMPMEPNERIWGSLVAA 477
             +M  E N   W SL+  
Sbjct: 399 FYEMK-EKNVISWTSLITG 416



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 7/187 (3%)

Query: 296 EPNAISVAS-----VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
           EP    ++S     +L  C +   L  G  IH ++ R     NL L   L+  Y K G  
Sbjct: 29  EPELTHLSSSLYMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGET 88

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
             AR VFD+M  ++VVSWT+ IS Y  +G   DA+ +FS+M  +G+  +   + SVL AC
Sbjct: 89  INARKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRAC 148

Query: 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI 470
           +    LE G      + ++ + +  +   + LVDL  + G +E+A  L + M  E +   
Sbjct: 149 TGLRCLERGMQIHGCI-QKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMS-ERDVVS 206

Query: 471 WGSLVAA 477
           W +++  
Sbjct: 207 WNAVIGG 213


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 181/534 (33%), Positives = 305/534 (57%), Gaps = 40/534 (7%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNV--VFFNVL 101
           I++LK++HA +I +  LH    +  K+   +G     VD    F   T+ +V  + +N L
Sbjct: 18  IRSLKQIHAHLIASGLLHDEFVLS-KVSEFFGKHIGFVDYAFDFLNQTDLHVGTLPYNTL 76

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           I +Y ++     A  VY  +  +GF PD YT+P VLKAC+    +  G Q+H   VK+G 
Sbjct: 77  IAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGF 136

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             +L+  N L+  Y  CG    A RV ++M  +DVV+W  +++GY + G FDEA+++  +
Sbjct: 137 LCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLK 196

Query: 222 MESLRIKPDADTMASLLPS---------------------------VTNT------SPEN 248
           M+   + P+  T  S+L +                           V N         E 
Sbjct: 197 MD---VVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCEC 253

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           +   +++F +L ++++VSW  +I+       P ++++L+  M++ G+EP+ I + SVL A
Sbjct: 254 LCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSA 313

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  L AL  GR +  Y+ER+ ++ ++ +  ALVDMYAKCG +  A  +F+ +  +++ +W
Sbjct: 314 CASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTW 373

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMT 427
            +++    M G G++A+  F  M+ +G+ P+ + F+++L+AC H+GL+ EGR Y++++++
Sbjct: 374 NALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMIS 433

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
           + +   PR+EH+ C++DLL RAG ++EAY  I+ MP+ P+  IWG+L++AC    N+++ 
Sbjct: 434 QPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELS 493

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
                H+  L    SG YVLLSNIYA   RW DV RVR+ M  KGI+K PG+SV
Sbjct: 494 QEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSV 547


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 214/597 (35%), Positives = 320/597 (53%), Gaps = 64/597 (10%)

Query: 8   CRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIG 67
           CR FST        L T    L   A N  L K       K+LH  ++ N    S  +I 
Sbjct: 21  CRGFSTYD------LGTCIATLQSCAHNANLSKG------KELHTHLLKNAFFGSPLAI- 67

Query: 68  LKLMRTYGACGQMVDTRHVFDEIT--NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
             L+  Y  C  +  +  VF+  T  NKNV  +N LI  ++ N L   AL +Y  M   G
Sbjct: 68  TSLINMYSKCSLIDHSLRVFNFPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLG 127

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             PD +T+PCV++AC   +   V  +IH  + KVGL+ ++F G+ LV  Y K   + EA 
Sbjct: 128 IAPDKFTFPCVIRACGDDDDGFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAY 187

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP---------------- 229
           RV  ++P +DVV WN+MV G+AQ GRF+EAL V R M    + P                
Sbjct: 188 RVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMG 247

Query: 230 DADTMASLLPSVTNTSPE--------------------NVLSVKEMFLKLDNKNLVSWNV 269
           D D   ++   VT    E                    + LSV EM   +D  ++ SWN 
Sbjct: 248 DFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEM---MDEIDIFSWNS 304

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRYV--- 325
           +++V+         + L+ +M     ++P+ ++V +VLPAC  L+AL+ GR+IH Y+   
Sbjct: 305 IMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGYMVVN 364

Query: 326 -----ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
                E   +  ++ L NAL+DMYAKCG++ +AR VF  MR +DV SW  MI+ YGM G 
Sbjct: 365 GLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMREKDVASWNIMITGYGMHGY 424

Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA 440
           G +A+ +FS+M  + + P+ I+FV +LSACSHAG+++EG  +   M  +Y + P IEH+ 
Sbjct: 425 GGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSIEHYT 484

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500
           C++D+L RAG++ EAYDL+  MP + +   W SL+AAC L+++ D+  +AA  +  L P+
Sbjct: 485 CVIDMLCRAGQLMEAYDLVLTMPFKADPVGWRSLLAACRLHNDTDLAEVAASKVIELEPD 544

Query: 501 QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
             G YVL+SN+Y   GR+ +V   R  M  + +KK PG S +E+ + V +     R+
Sbjct: 545 HCGNYVLMSNVYGVVGRYEEVLEWRYTMKQQNVKKRPGCSWIELVNGVHVFITGDRT 601


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 170/486 (34%), Positives = 295/486 (60%), Gaps = 38/486 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNK----NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           L+  Y   G + + + +F E+ +     N++ +N +I  + ++ LY +A+ ++ +M + G
Sbjct: 186 LVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRG 245

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           F+PD  T   VL A      L++G+ IH  V+K GL  +    + L+ MYGKC C  E  
Sbjct: 246 FEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMS 305

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           +V + M   DV + N+ + G ++NG+ + +L + R++                       
Sbjct: 306 QVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQL----------------------- 342

Query: 246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                  K+  ++L   N+VSW  MIA  + N    EA++L+ +M++ G++PN++++  +
Sbjct: 343 -------KDQGMEL---NVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCL 392

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           LPACG+++AL+ G+  H +  R+ +  ++ + +AL+DMYAKCG +  +R  FD +  +++
Sbjct: 393 LPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNL 452

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           V W ++I+ Y M G+  +A+ +F  M  SG  PD I+F  VLSACS +GL EEG YYF  
Sbjct: 453 VCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNS 512

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M+ +Y +  R+EH+AC+V LL RAGK+E+AY +I++MP+ P+  +WG+L+++C +++N+ 
Sbjct: 513 MSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVS 572

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMN 544
           +G +AA+ +F L P+  G Y+LLSNIYA  G W +V RVR  M +KG++K PG S +E+ 
Sbjct: 573 LGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVK 632

Query: 545 DQVQII 550
           ++V ++
Sbjct: 633 NKVHML 638



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 137/498 (27%), Positives = 231/498 (46%), Gaps = 76/498 (15%)

Query: 19  ALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACG 78
           AL+ S Q+T+L     N +      +   ++ HA I+    L ++  +  KL+  Y    
Sbjct: 9   ALLDSVQHTIL-----NCLNSTTASLSQTRQAHAHIL-KTGLFNDTHLATKLLSHYANNM 62

Query: 79  QMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLK 138
              D   V D +   NV  F+ LI ++   + ++ AL  +  M   G  PD    P  +K
Sbjct: 63  CFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVK 122

Query: 139 ACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVT 198
           AC+G ++L    Q+H      G D + F  + LV MY KC  +++A RV + M   DVV+
Sbjct: 123 ACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVS 182

Query: 199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLK 258
           W+++VA YA+ G  DEA  +  EM    ++P                             
Sbjct: 183 WSALVAAYARQGCVDEAKRLFSEMGDSGVQP----------------------------- 213

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
               NL+SWN MIA + ++ + +EAV ++L M + G EP+  +++SVLPA GDL  L++G
Sbjct: 214 ----NLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMG 269

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD-------------- 364
             IH YV ++ L  +  + +AL+DMY KC   +E   VFDQM   D              
Sbjct: 270 ILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRN 329

Query: 365 ---------------------VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
                                VVSWTSMI+    +G+  +A+ LF +M ++G+ P+S+  
Sbjct: 330 GQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTI 389

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
             +L AC +   L  G+      + +  +   +   + L+D+  + G+++ +      +P
Sbjct: 390 PCLLPACGNIAALMHGKAA-HCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIP 448

Query: 464 MEPNERIWGSLVAACCLY 481
            + N   W +++A   ++
Sbjct: 449 TK-NLVCWNAVIAGYAMH 465



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 122/310 (39%), Gaps = 61/310 (19%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y  CG++  +R  FD I  KN+V +N +I  Y  +    +A+ ++  M   G
Sbjct: 423 VGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSG 482

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             PD  ++ CVL ACS S                                   G  +E  
Sbjct: 483 QKPDIISFTCVLSACSQS-----------------------------------GLTEEGS 507

Query: 186 RVLNDMPSK-----DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
              N M SK      V  +  MV   ++ G+ ++A  + R M    + PDA    +LL S
Sbjct: 508 YYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMP---VNPDACVWGALLSS 564

Query: 241 --VTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
             V N      ++ +++F +L+  N  ++ ++  +YA+  M  E   +   M+  G+  N
Sbjct: 565 CRVHNNVSLGEVAAEKLF-ELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKN 623

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR--LEN--ALVDMYAKCGSLTEAR 354
                   P C   S + +  K+H  +   K  P +   +EN   L     K G   E  
Sbjct: 624 --------PGC---SWIEVKNKVHMLLAGDKSHPQMTQIIENLDKLSMEMKKLGYFPEIN 672

Query: 355 TVFDQMRCQD 364
            V   +  QD
Sbjct: 673 FVLQDVEEQD 682


>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 629

 Score =  340 bits (873), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 197/547 (36%), Positives = 306/547 (55%), Gaps = 43/547 (7%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
           L K  ++  +K+LHAQII  ++LH +  I  KL+     C Q      VF+++   NV  
Sbjct: 26  LPKCANLNQVKQLHAQII-RRNLHQDLHIAPKLISALSLCRQTNLALRVFNQVQEPNVHL 84

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
            N LIR++  N   Y A  V+  M   G   D +TYP +LKACSG + L V   +H  + 
Sbjct: 85  CNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNHIE 144

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCL---------------------------------KEA 184
           K+GL  +++  N L+  Y +CG L                                 ++A
Sbjct: 145 KLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDA 204

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           R++ ++MP +D+++WN+M+ GYA+      A ++  +M      P+ +T++     +  +
Sbjct: 205 RKLFDEMPQRDLISWNTMLDGYARCREMSRAFELFEKM------PERNTVSWSTMVMGYS 258

Query: 245 SPENVLSVKEMFLKLD--NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
              ++   + MF K+    KN+V+W ++IA YA   +  EA  L  QM   G+  +A + 
Sbjct: 259 KAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAA 318

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            S+L AC +   L LG + H  +++  L  N  + NAL+DMYAKCGSL +A  VF+ M  
Sbjct: 319 ISILAACAESGLLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPK 378

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           +D+VSW +M+   G+ G G +A+ LFS+M   G+ PD + F++VL +C+HAGL++EG  Y
Sbjct: 379 KDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGIDY 438

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           F  M + Y LVP++EH+ CLVDLLGR G+++EA  +++ MPMEPN  IWG+L+ AC +++
Sbjct: 439 FYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHN 498

Query: 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA-SV 541
            +DI     D++  L P+  G Y LLSNIYA A  W  V  +R  M S G++K  GA SV
Sbjct: 499 EVDIAKEVLDNLVKLDPSDPGNYTLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSV 558

Query: 542 EMNDQVQ 548
           E+ D + 
Sbjct: 559 ELEDGIH 565


>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
 gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  340 bits (873), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 193/511 (37%), Positives = 285/511 (55%), Gaps = 45/511 (8%)

Query: 74  YGACGQMVDTRHVFDEITN--KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCY 131
           Y  C QM     V +   +  +NV  +N LI  +V N L  D L  Y+ M   G  PD Y
Sbjct: 2   YAKCNQMNQALLVLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDKY 61

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
           T+PC++K       +    +IH  V K+GLD +++ G+ LV+ Y K   +KEAR + +++
Sbjct: 62  TFPCLIKGLCEVMEVFQVKKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDEI 121

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREM----------------------------- 222
           P +DVV WNSMV GYAQ GRFDEAL VCREM                             
Sbjct: 122 PDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNGR 181

Query: 223 --ESLRIKPDADTMASLLPSVTNTSPEN--VLSVKEMFLKLDNKNLVSWNVMIAVYANNS 278
                 IK   D+  S+  ++ +   +   V+   E+F  ++ K++ SWN +++     S
Sbjct: 182 LVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELCS 241

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV---------ERKK 329
                + L+ +M   G++ + +++ ++LPAC  L+AL+ GR+IH Y+         E + 
Sbjct: 242 DHDGTLRLFDRMLGDGVQLDLVTITTILPACSHLAALVHGREIHGYMIVNGFVKDGESEN 301

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           +  NL+  NAL+DMYAKCGS+ +A  VF  M  +D  SW  MI  YGM G G +A+ +FS
Sbjct: 302 MY-NLQTINALMDMYAKCGSMRDAGMVFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFS 360

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
            M  SGL P+ I FV VL ACSHAG + +G  +   M  ++ +VP I+H+ C++D+LGRA
Sbjct: 361 DMCKSGLKPNEITFVGVLLACSHAGFISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRA 420

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G++EEAY L   MP++ N  +W +L+AAC LY N+D+  +AA  +F L P   G YVL+S
Sbjct: 421 GQLEEAYKLAVTMPIQTNPVVWRALLAACQLYGNVDLAEVAAQKVFELNPAHCGNYVLMS 480

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           N Y  AGR+ +V  +R  M  + +KK PG S
Sbjct: 481 NAYVAAGRYQEVLDIRHTMRQQDVKKTPGCS 511



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 181/408 (44%), Gaps = 53/408 (12%)

Query: 18  QALVLSTQYT---LLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTY 74
           QA VL  +YT   L+ G      L +  ++  +KK+H  ++    L  +  +G  L+ +Y
Sbjct: 53  QAGVLPDKYTFPCLIKG------LCEVMEVFQVKKIHG-LVRKLGLDLDMYVGSSLVSSY 105

Query: 75  GACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYP 134
                M + R +FDEI +++VV +N ++  Y     + +AL V + MS  G     +T  
Sbjct: 106 LKSELMKEARELFDEIPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVS 165

Query: 135 CVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK 194
            VL   +G      G  +H  ++K+G D  +   N L+ MYGKC C+ +A  +   M  K
Sbjct: 166 GVLSVFAGRGDFDNGRLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEK 225

Query: 195 DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS-------------- 240
           D+ +WNS+++        D  L +   M    ++ D  T+ ++LP+              
Sbjct: 226 DIFSWNSILSANELCSDHDGTLRLFDRMLGDGVQLDLVTITTILPACSHLAALVHGREIH 285

Query: 241 --------VTNTSPENVLSVKEM-------------------FLKLDNKNLVSWNVMIAV 273
                   V +   EN+ +++ +                   F  + N++  SWN+MI  
Sbjct: 286 GYMIVNGFVKDGESENMYNLQTINALMDMYAKCGSMRDAGMVFYNMSNRDTASWNIMIMG 345

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK-LQP 332
           Y  +    EA+ ++  M   G++PN I+   VL AC     +  G K    +E K  + P
Sbjct: 346 YGMHGYGNEALYMFSDMCKSGLKPNEITFVGVLLACSHAGFISQGIKFLGEMELKHGVVP 405

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSG 379
            ++    ++DM  + G L EA  +   M  Q + V W ++++A  + G
Sbjct: 406 TIQHYTCVIDMLGRAGQLEEAYKLAVTMPIQTNPVVWRALLAACQLYG 453



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 124/282 (43%), Gaps = 35/282 (12%)

Query: 174 MYGKCGCLKEARRVLNDMP--SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA 231
           MY KC  + +A  VLN     +++V  +N++++G+  NG   + L    EM    + PD 
Sbjct: 1   MYAKCNQMNQALLVLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDK 60

Query: 232 DTMASLLPSVTNT---------------------------------SPENVLSVKEMFLK 258
            T   L+  +                                      E +   +E+F +
Sbjct: 61  YTFPCLIKGLCEVMEVFQVKKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDE 120

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           + ++++V WN M+  YA      EA+ +  +M   G+  +  +V+ VL           G
Sbjct: 121 IPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNG 180

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           R +H ++ +      + + NAL+DMY KC  + +A  +F+ M  +D+ SW S++SA  + 
Sbjct: 181 RLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELC 240

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
                 + LF +ML  G+  D +   ++L ACSH   L  GR
Sbjct: 241 SDHDGTLRLFDRMLGDGVQLDLVTITTILPACSHLAALVHGR 282


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 188/549 (34%), Positives = 311/549 (56%), Gaps = 39/549 (7%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +++   +I+ LK++HA+ II+  L     I  K++ ++ +   +     VF++    +  
Sbjct: 12  LIETCTNIQQLKQIHAKSIISS-LSYTQFIITKIINSFLSHACLDYATQVFNQTQEPDGF 70

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
            +N +IR+Y ++     A+ +Y  M +      D YTYP V KAC+   ++  G ++H  
Sbjct: 71  IYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHGV 130

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           +V++G + + F  + L+  Y  CG +  A++V ++  +KDVV WN+++ GYA+ G   ++
Sbjct: 131 IVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDS 190

Query: 216 LDVCREM-ESLRIKPDADTMASLLPSVTNTS-------------PENVL----------- 250
             V +EM E   ++P+  TM  L+ +   +               + VL           
Sbjct: 191 FGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALI 250

Query: 251 ----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                       +++F ++  KN V WN +I  Y       E ++L  +M +  ++P+  
Sbjct: 251 NLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRF 310

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           +V+ VL AC  + A  LG  +HR+ E+K +  ++ +  AL+DMYAKCG +  AR VFDQM
Sbjct: 311 TVSGVLSACAQMGAFNLGNWVHRFAEKKGIW-DVFIGTALIDMYAKCGFIGAARKVFDQM 369

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             ++V +W +++S Y   GQ   A+ LFS+M  SG  PDSI F++VL AC+H+GL+E G+
Sbjct: 370 NERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGK 429

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
            YF +M + YK+ PR+EH+ C+VDLLGRAG ++EA +LIK M +EPN  +WG+L++AC +
Sbjct: 430 QYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSI 489

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           + N++IG  AA H+  L     G YV+L+N+YA A R+  VK VR+ M  KGI K  G S
Sbjct: 490 HGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKSHGCS 549

Query: 541 -VEMNDQVQ 548
            +E+ D V 
Sbjct: 550 MIEIGDVVH 558


>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 192/567 (33%), Positives = 305/567 (53%), Gaps = 71/567 (12%)

Query: 41  YPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           +  +   K+LHAQ+I +  L  NP +  +L+  Y     +VD + V +     + + +N+
Sbjct: 94  FKSLSQGKQLHAQVI-SLGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNTLDPLHWNL 152

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           LI +YV N  + +AL VYKNM     +PD YTYP VLKAC  S     GL++H S+    
Sbjct: 153 LISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIEASS 212

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD------------------------- 195
           ++++LF  N LV+MYG+ G L+ AR + ++MP +D                         
Sbjct: 213 MEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWKEAFQLFG 272

Query: 196 ----------VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN-- 243
                     V+ WN++  G   +G F  AL +  +M +  I  DA  M   L + ++  
Sbjct: 273 SMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRT-SIHLDAIAMVVGLNACSHIG 331

Query: 244 --------------TSPENVLSVKE-----------------MFLKLDNKNLVSWNVMIA 272
                         T  +   +VK                  +F + + K L++WN M++
Sbjct: 332 AIKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEKGLITWNAMLS 391

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV-ERKKLQ 331
            YA+     E   L+ +M   G+EPN +++ASVLP C  ++ L  G++ H Y+ + K+ +
Sbjct: 392 GYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFE 451

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
             L L NALVDMY++ G + EAR VFD +  +D V++TSMI  YGM G+G   + LF +M
Sbjct: 452 EYLLLWNALVDMYSRSGRVLEARKVFDSLTKRDEVTYTSMILGYGMKGEGETTLKLFEEM 511

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
               + PD +  V+VL+ACSH+GL+ +G+  FK M + + +VPR+EH+AC+ DL GRAG 
Sbjct: 512 CKLEIKPDHVTMVAVLTACSHSGLVAQGQVLFKRMIDVHGIVPRLEHYACMADLFGRAGL 571

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
           + +A + I  MP +P   +W +L+ AC ++ N ++G  AA  +  + P+ SGYYVL++N+
Sbjct: 572 LNKAKEFITGMPYKPTSAMWATLLGACRIHGNTEMGEWAAGKLLEMKPDHSGYYVLIANM 631

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPG 538
           YA AG W  +  VR +M + G++K PG
Sbjct: 632 YAAAGSWRKLAEVRTYMRNLGVRKAPG 658



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 184/423 (43%), Gaps = 69/423 (16%)

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYP--CVLKACSGSNSLLVGLQIHCSVVKV 159
           ++ +V +    +A   +  +  H        +P   +L AC+   SL  G Q+H  V+ +
Sbjct: 51  LKDFVTHGHLTNAFKTFFQIQHHAASSHLLLHPIGSLLLACTHFKSLSQGKQLHAQVISL 110

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           GLD N    + LV  Y     L +A+ V     + D + WN +++ Y +NG F EAL V 
Sbjct: 111 GLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNTLDPLHWNLLISAYVRNGFFVEALCVY 170

Query: 220 REMESLRIKPDADTMASLLP----------------SVTNTSPENVLSV----------- 252
           + M + +I+PD  T  S+L                 S+  +S E  L V           
Sbjct: 171 KNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIEASSMEWSLFVHNALVSMYGRF 230

Query: 253 ------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN-------- 298
                 + +F  +  ++ VSWN +I+ YA+  +  EA  L+  M+  G+E N        
Sbjct: 231 GKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIA 290

Query: 299 --------------------------AISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
                                     AI++   L AC  + A+ LG++IH +  R     
Sbjct: 291 GGCLHSGNFRGALQLISQMRTSIHLDAIAMVVGLNACSHIGAIKLGKEIHGHAVRTCFDV 350

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
              ++NAL+ MY++C  L  A  +F +   + +++W +M+S Y    +  +   LF +ML
Sbjct: 351 FDNVKNALITMYSRCRDLGHAFILFHRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREML 410

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
             G+ P+ +   SVL  C+    L+ G+ +   + +  +    +  +  LVD+  R+G+V
Sbjct: 411 QEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRV 470

Query: 453 EEA 455
            EA
Sbjct: 471 LEA 473



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 3/183 (1%)

Query: 283 AVDLYLQMEVHGIEPNAI--SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
           A   + Q++ H    + +   + S+L AC    +L  G+++H  V    L  N  L + L
Sbjct: 63  AFKTFFQIQHHAASSHLLLHPIGSLLLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRL 122

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           V+ Y     L +A+ V +     D + W  +ISAY  +G   +A+ ++  ML   + PD 
Sbjct: 123 VNFYTNVNLLVDAQFVTESSNTLDPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDE 182

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
             + SVL AC  +     G    + +           H A LV + GR GK+E A  L  
Sbjct: 183 YTYPSVLKACGESLDFNSGLEVHRSIEASSMEWSLFVHNA-LVSMYGRFGKLEIARHLFD 241

Query: 461 QMP 463
            MP
Sbjct: 242 NMP 244


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 177/512 (34%), Positives = 286/512 (55%), Gaps = 48/512 (9%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           LKK HA ++I   L  +  +  K++        M     +F E+ + N   +N +IR+  
Sbjct: 4   LKKNHA-LVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACT 62

Query: 107 NNYLYYDALHVYKNM---------SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +N +Y   +  YK M         S     PD +T+P V+KAC+      +G Q+H    
Sbjct: 63  HNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFF 122

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           K G   +L   N L+ MY KC  L +A  + ++M  +  ++WN +++G+ + G+   A  
Sbjct: 123 KFGKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRA-- 180

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
                                              + +F ++ N+ +VSW  +I+ Y   
Sbjct: 181 -----------------------------------RALFDEMPNRTIVSWTAIISGYTRI 205

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
               +A+D++ +M++ GIEP+  S+ SVLPAC  L AL  G+ IH +  R  L     + 
Sbjct: 206 GSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCIC 265

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
           NAL++MY KCG + +A  +FDQMR +DV+SW++MI      G+  +A+A+F +M  + + 
Sbjct: 266 NALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIK 325

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
           P+ I FV +LSAC+HAG  EEG  YF  M + + + P IEH+  LVDLLGRAG++ +A D
Sbjct: 326 PNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALD 385

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
           ++++MPM+P+ +IWGSL+++C  + N+++ ++A +H+  L P+ +G YVLLSNIYA  G+
Sbjct: 386 IVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIAMEHLEELEPDDTGNYVLLSNIYADLGK 445

Query: 518 WGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           W DV R+RK + SK +KK PG S +E+N+  Q
Sbjct: 446 WDDVSRMRKLVRSKRMKKTPGCSLIEVNNVAQ 477


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 180/540 (33%), Positives = 305/540 (56%), Gaps = 36/540 (6%)

Query: 43  DIKTLK--KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           D+K L+  +L   I+    L  +  +   L+  Y  C ++ D R +FD++  +++V + V
Sbjct: 42  DLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTV 101

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           +I  Y       ++L +++ M   G  PD      V+ AC+   ++     I   + +  
Sbjct: 102 MIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKK 161

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
              ++  G  ++ MY KCGC++ AR + + M  K+V++W++M+A Y  +G+  +ALD+ R
Sbjct: 162 FQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFR 221

Query: 221 EMESLRIKPDADTMASLLPSVTNTSP---------------------------------E 247
            M S  + PD  T+ASLL + ++                                     
Sbjct: 222 MMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCR 281

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
            +   + +F K+  ++LV+W VMI  YA      E++ L+ +M   G+ P+ +++ +V+ 
Sbjct: 282 EIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVF 341

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           AC  L A+   R I  Y++RKK Q ++ L  A++DM+AKCG +  AR +FD+M  ++V+S
Sbjct: 342 ACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVIS 401

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W++MI+AYG  GQG  A+ LF  ML SG+ P+ I  VS+L ACSHAGL+EEG  +F +M 
Sbjct: 402 WSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMW 461

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
           E Y +   ++H+ C+VDLLGRAG+++EA  LI+ M +E +E +WG+ + AC  + ++ + 
Sbjct: 462 EDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLA 521

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
             AA  +  L P   G+Y+LLSNIYA AGRW DV + R  M+ + +KK+PG + +E++++
Sbjct: 522 EKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNK 581



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 204/400 (51%), Gaps = 35/400 (8%)

Query: 111 YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG 170
           Y +    ++ +   G  PD YT P V++AC    +L +G  IH  V K GLD + F    
Sbjct: 11  YINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAA 70

Query: 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
           LV MY KC  +++AR + + M  +D+VTW  M+ GYA+ G+ +E+L +  +M    + PD
Sbjct: 71  LVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPD 130

Query: 231 ADTMASLLPSVTNTSPEN---------------------------------VLSVKEMFL 257
              M +++ +       +                                 V S +E+F 
Sbjct: 131 KVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFD 190

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
           +++ KN++SW+ MIA Y  +    +A+DL+  M   G+ P+ I++AS+L AC DL  L +
Sbjct: 191 RMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQM 250

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           GR IH  V +  L  +  +  ALVDMY KC  + +AR +FD+M  +D+V+WT MI  Y  
Sbjct: 251 GRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAE 310

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
            G   +++ LF KM   G+ PD +A V+V+ AC+  G + + R       ++ K    + 
Sbjct: 311 CGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKAR-TIDDYIQRKKFQLDVI 369

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
               ++D+  + G VE A ++  +M  E N   W +++AA
Sbjct: 370 LGTAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAA 408


>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
          Length = 545

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 188/508 (37%), Positives = 276/508 (54%), Gaps = 39/508 (7%)

Query: 34  CNDILDKYPDIKTLKKLHAQIIINQHLHSNP-SIGLKLMRTYGACGQMVDTRHVFDEITN 92
           C+ +L +   I+ L+++HAQ + +  LH N  SI  K+ R+Y   G+  D   +FDEI +
Sbjct: 23  CHHLLTQCKTIRELQRIHAQALTHG-LHPNQQSISCKIFRSYAEFGRPADAGRLFDEIPH 81

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
            +++ F  L+  ++    ++ A+ V+ +    G  PD +     L A  G     +G  +
Sbjct: 82  PDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVV 141

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  + + GLD  L   N LV MY +CG  + AR V + M  KD VTW SM+ GY +    
Sbjct: 142 HGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGV 201

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIA 272
           D AL                                       F ++  K+ VSW  +I 
Sbjct: 202 DSAL-------------------------------------SFFYQMPMKSTVSWTALIT 224

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            +  +  P +A++L+ +M + G  PN I++  VL AC D+ AL LGR IH Y  +     
Sbjct: 225 GHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATT 284

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           N+ + NAL+DMYAK GS+  A +VF++++ +D  +WT+MIS++ + G G  AV LF  ML
Sbjct: 285 NIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDML 344

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
            SG+ P+S+ FVSVLSACSHAGL++EGR  F  M E Y + PR+EH+ C+VDLLGR G +
Sbjct: 345 RSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLL 404

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
           EEA  LI  M +EP+  IW SL++AC  + N  +  +A   I    P   G YVLL N+Y
Sbjct: 405 EEAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAEIAGKEIIKREPGDDGVYVLLWNMY 464

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           A + RW +   +RK M S+ I K PG S
Sbjct: 465 ALSNRWKEALDMRKQMLSRKIYKKPGCS 492


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 206/594 (34%), Positives = 308/594 (51%), Gaps = 93/594 (15%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC +I    P  +    +HA ++       N  +G  L+  YG CG   + R VFDE+  
Sbjct: 154 ACGEI----PSFRCGASVHA-VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRE 208

Query: 93  KNV---VFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLV 148
           + V   V +N ++ +Y+       A+ +++ M+   G  PD  +   VL AC+   +   
Sbjct: 209 RGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSR 268

Query: 149 GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
           G Q+H   ++ GL  ++F GN +V MY KCG ++EA +V   M  KDVV+WN+MV GY+Q
Sbjct: 269 GKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQ 328

Query: 209 NGRFD-----------------------------------EALDVCREMESLRIKPDADT 233
            GRFD                                   EALDV R+M     +P+  T
Sbjct: 329 IGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVT 388

Query: 234 MASLLPSVTNTSPENVLSVKE-------MFLKLD-------------------------- 260
           + SLL      S   +L  KE         L LD                          
Sbjct: 389 LVSLLSGCA--SAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKA 446

Query: 261 -----------NKNLVSWNVMIAVYANNSMPAEAVDLYLQM--EVHGIEPNAISVASVLP 307
                      ++++V+W V+I   A +    EA++L+ QM    + + PNA +++  L 
Sbjct: 447 ARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALM 506

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPN-LRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
           AC  L AL  GR+IH YV R + +   L + N L+DMY+K G +  AR VFD M  ++ V
Sbjct: 507 ACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGV 566

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           SWTS+++ YGM G+G +A+ +F +M    L PD + FV VL ACSH+G++++G  YF  M
Sbjct: 567 SWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGM 626

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
            + + +VP  EH+AC+VDLL RAG+++EA +LI+ MPM+P   +W +L++AC +Y+N+++
Sbjct: 627 NKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVEL 686

Query: 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           G  AA+ +  L     G Y LLSNIYA A  W DV R+R  M + GIKK PG S
Sbjct: 687 GEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCS 740



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 155/554 (27%), Positives = 250/554 (45%), Gaps = 98/554 (17%)

Query: 15  KPVQALVLSTQYTLLSGDACNDILDK-YPDIKTLK--KLHAQIIINQHLHSNPSIGLKLM 71
           KP   L+  T +   +  +  D+    +   K+L   +L  Q ++ Q L  +P+  + + 
Sbjct: 28  KPKPPLLFLTTFFFSTASSTTDLTSTLFHQCKSLASAELTHQQLLVQGLPHDPTHIISMY 87

Query: 72  RTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCY 131
            T+ +  + +         ++  V ++N LIR  V+     D L +Y+ M   G+ PD Y
Sbjct: 88  LTFNSPAKALSVLRRLHP-SSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHY 146

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
           T+P VLKAC    S   G  +H  V   G ++N+F GNGLV+MYG+CG  + AR+V ++M
Sbjct: 147 TFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEM 206

Query: 192 PSK---DVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPDADTMASLLPSVTNTSP- 246
             +   D+V+WNS+VA Y Q G    A+ +   M E L I+PDA ++ ++LP+  +    
Sbjct: 207 RERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAW 266

Query: 247 ----------------ENVL----------------SVKEMFLKLDNKNLVSWNVM---- 270
                           E+V                    ++F ++  K++VSWN M    
Sbjct: 267 SRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGY 326

Query: 271 -------------------------------IAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                                          IA YA   +  EA+D++ QM + G EPN 
Sbjct: 327 SQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNV 386

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQ-------PNLRLENALVDMYAKCGSLTE 352
           +++ S+L  C     LL G++ H +  +  L         +L + NAL+DMY+KC S   
Sbjct: 387 VTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKA 446

Query: 353 ARTVFDQMRCQD--VVSWTSMISAYGMSGQGYDAVALFSKMLMSG--LCPDSIAFVSVLS 408
           AR +FD +  +D  VV+WT +I      G+  +A+ LFS+ML     + P++      L 
Sbjct: 447 ARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALM 506

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA-----CLVDLLGRAGKVEEAYDLIKQMP 463
           AC+  G L  GR         Y L  R E        CL+D+  ++G V+ A  +   M 
Sbjct: 507 ACARLGALRFGR-----QIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM- 560

Query: 464 MEPNERIWGSLVAA 477
            + N   W SL+  
Sbjct: 561 HQRNGVSWTSLMTG 574


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 185/546 (33%), Positives = 304/546 (55%), Gaps = 36/546 (6%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           IL K  D+K L+++HAQII +   H N  +   LM  Y  CG + D + +F     KNVV
Sbjct: 30  ILRKLKDLKPLQQIHAQIITSGLTH-NTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVV 88

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            + +LI     N  + +A+ V++ M +  F P+  T   VL A +    + +   +HC  
Sbjct: 89  SWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFW 148

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           V+ G + N+F    LV MY K GC+  AR++   M  ++VVTWN++V+GY+ +G  +EA+
Sbjct: 149 VRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAI 208

Query: 217 DVCREMESLRIKPDADTMASLLPS----------------VTNTSPENVLSVK------- 253
           D+   M    +  D  T+ SL+P+                +  T  EN   +K       
Sbjct: 209 DLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIY 268

Query: 254 ----------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISV 302
                      +F ++  K++ +W +M+  +++      A+  + +M  +  ++ ++I++
Sbjct: 269 VSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIAL 328

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
             +L +C    AL  GR++H    +     N+ + +A++DMYA CG+L +A+  F  M  
Sbjct: 329 MGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGE 388

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           +DVV W +MI+  GM+G G DA+ LF +M  SGL PD   FVSVL ACSHAG++ EG   
Sbjct: 389 KDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQI 448

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           F  M +   ++P ++H+AC++D+LGRAG+++ AY  I  MP +P+  ++ +L+ AC ++ 
Sbjct: 449 FYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHG 508

Query: 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASV 541
           N+ +G   +  IF + PN +GYYVLLSN+YA AG W  VK  R  + SK +KK PG +S+
Sbjct: 509 NIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSI 568

Query: 542 EMNDQV 547
           E+N ++
Sbjct: 569 EINQEI 574


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 183/527 (34%), Positives = 290/527 (55%), Gaps = 35/527 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H ++ + + L+S+  +G  L+     CG +   +  F  I +++VV +N LI +   
Sbjct: 249 KRIH-KLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQ 307

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +    +A   Y  M   G   +  TY  +L ACS S +L  G  IH  + + G   ++  
Sbjct: 308 HGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQI 367

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           GN L++MY +CG L +AR +   MP +D+++WN+++AGYA+     EA+ + ++M+S  +
Sbjct: 368 GNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGV 427

Query: 228 KPDADTMASLLPSVTNTSP--------ENVL-------------------------SVKE 254
           KP   T   LL +  N+S         E++L                           + 
Sbjct: 428 KPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQN 487

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F     ++++SWN MIA +A +     A  L+ +M+   +EP+ I+ ASVL  C +  A
Sbjct: 488 VFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEA 547

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           L LG++IH  +    LQ ++ L NAL++MY +CGSL +AR VF  ++ +DV+SWT+MI  
Sbjct: 548 LELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGG 607

Query: 375 YGMSGQGYDAVALFSKMLMSGL-CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
               G+   A+ LF +M   G   PD   F S+LSAC+HAGL+ EG   F  M  +Y ++
Sbjct: 608 CADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVL 667

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P IEH+ CLV LLGRA + +EA  LI QMP  P+  +W +L+ AC ++ N+ +   AA++
Sbjct: 668 PTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANN 727

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
              L       Y+LLSN+YA AGRW DV ++R+ M  +GI+K PG S
Sbjct: 728 ALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRS 774



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/469 (28%), Positives = 229/469 (48%), Gaps = 36/469 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           +++  KK+H+QII       +P +   L+  YG CG +   R VF  I+ ++VV +N ++
Sbjct: 143 ELENGKKIHSQII-KAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTML 201

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             Y       + L ++  MS  G  PD  TY  +L A +  + L  G +IH   V+ GL+
Sbjct: 202 GLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLN 261

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++  G  LV M  +CG +  A++    +  +DVV +N+++A  AQ+G   EA +    M
Sbjct: 262 SDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRM 321

Query: 223 ESLRIKPDADTMASLLPSVTNTSP---------------------------------ENV 249
            S  +  +  T  S+L + + +                                    ++
Sbjct: 322 RSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDL 381

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
              +E+F  +  ++L+SWN +IA YA      EA+ LY QM+  G++P  ++   +L AC
Sbjct: 382 PKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSAC 441

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
            + SA   G+ IH  + R  ++ N  L NAL++MY +CGSL EA+ VF+  + +DV+SW 
Sbjct: 442 ANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWN 501

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           SMI+ +   G    A  LF +M    L PD+I F SVLS C +   LE G+     +TE 
Sbjct: 502 SMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITES 561

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
             L   +     L+++  R G +++A ++   +    +   W +++  C
Sbjct: 562 -GLQLDVNLGNALINMYIRCGSLQDARNVFHSL-QHRDVMSWTAMIGGC 608



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/408 (29%), Positives = 199/408 (48%), Gaps = 38/408 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLK--LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           K++HAQ++        P I L   L+  Y  C  ++D   VF E+  ++V+ +N LI  Y
Sbjct: 47  KRIHAQMV---EAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCY 103

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
                   A  +++ M   GF P+  TY  +L AC     L  G +IH  ++K G   + 
Sbjct: 104 AQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDP 163

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
              N L++MYGKCG L  AR+V   +  +DVV++N+M+  YAQ     E L +  +M S 
Sbjct: 164 RVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSE 223

Query: 226 RIKPDADTMASLLPSVTNTSP---------------------------------ENVLSV 252
            I PD  T  +LL + T  S                                   +V S 
Sbjct: 224 GISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSA 283

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           K+ F  + ++++V +N +IA  A +    EA + Y +M   G+  N  +  S+L AC   
Sbjct: 284 KQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTS 343

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
            AL  G+ IH ++       ++++ NAL+ MYA+CG L +AR +F  M  +D++SW ++I
Sbjct: 344 KALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAII 403

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           + Y       +A+ L+ +M   G+ P  + F+ +LSAC+++    +G+
Sbjct: 404 AGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGK 451



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 180/370 (48%), Gaps = 34/370 (9%)

Query: 127 DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR 186
           + D  TY  +L+ C+    L    +IH  +V+ G+  ++F  N L+ MY KC  + +A +
Sbjct: 24  ETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQ 83

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL-------- 238
           V  +MP +DV++WNS+++ YAQ G   +A  +  EM++    P+  T  S+L        
Sbjct: 84  VFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAE 143

Query: 239 -------------------PSVTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIAV 273
                              P V N+         ++   +++F  +  +++VS+N M+ +
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           YA  +   E + L+ QM   GI P+ ++  ++L A    S L  G++IH+    + L  +
Sbjct: 204 YAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSD 263

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
           +R+  ALV M  +CG +  A+  F  +  +DVV + ++I+A    G   +A   + +M  
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRS 323

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
            G+  +   ++S+L+ACS +  LE G+     ++E       ++    L+ +  R G + 
Sbjct: 324 DGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGH-SSDVQIGNALISMYARCGDLP 382

Query: 454 EAYDLIKQMP 463
           +A +L   MP
Sbjct: 383 KARELFYTMP 392



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 125/230 (54%), Gaps = 2/230 (0%)

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
           +VL   ++F ++  ++++SWN +I+ YA      +A  L+ +M+  G  PN I+  S+L 
Sbjct: 77  SVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILT 136

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           AC   + L  G+KIH  + +   Q + R++N+L+ MY KCG L  AR VF  +  +DVVS
Sbjct: 137 ACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVS 196

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           + +M+  Y       + + LF +M   G+ PD + ++++L A +   +L+EG+   K+  
Sbjct: 197 YNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTV 256

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           E+  L   I     LV +  R G V+ A    K +  + +  ++ +L+AA
Sbjct: 257 EE-GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIA-DRDVVVYNALIAA 304


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 205/560 (36%), Positives = 292/560 (52%), Gaps = 81/560 (14%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           SN  +G  L+  Y  CG + D R VFDE+   +VV +N +I SY        AL ++  M
Sbjct: 160 SNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKM 219

Query: 122 SVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           +   GF PD  T   VL  C+   +  +G Q H   V   +  N+F GN LV MY K G 
Sbjct: 220 TNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGM 279

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD--------------------------- 213
           + EA  V ++MP KDVV+WN+MVAGY+Q GRF+                           
Sbjct: 280 MDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISG 339

Query: 214 --------EALDVCREMESLRIKPDADTMASLLPSVTNTSP------------------- 246
                   EAL VCR+M S  IKP+  T+ S+L    +                      
Sbjct: 340 YAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLR 399

Query: 247 ------ENVLS---------------VKEMF--LKLDNKNLVSWNVMIAVYANNSMPAEA 283
                 EN++                 + MF  L    +++V+W VMI  Y+ +    +A
Sbjct: 400 KNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKA 459

Query: 284 VDLYLQM--EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP-NLRLENAL 340
           ++L  +M  E     PNA +++  L AC  L+AL +G++IH Y  R +     L + N L
Sbjct: 460 LELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCL 519

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +DMYAKCG + +AR VFD M  ++ V+WTS+++ YGM G G +A+ +F +M   G   D 
Sbjct: 520 IDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDG 579

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           +  + VL ACSH+G++++G  YF  M   + + P  EH+ACLVDLLGRAG++  A  LI+
Sbjct: 580 VTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIE 639

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD 520
           +MPMEP   +W +L++ C ++  +++G  AA  I  LA N  G Y LLSN+YA AGRW D
Sbjct: 640 EMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKD 699

Query: 521 VKRVRKFMNSKGIKKMPGAS 540
           V R+R  M  KGIKK PG S
Sbjct: 700 VTRIRSLMRHKGIKKRPGCS 719



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 139/471 (29%), Positives = 213/471 (45%), Gaps = 89/471 (18%)

Query: 91  TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGL 150
           ++  V  +N LIRSY NN      L  +  M    + PD YT+P V KAC   +S+  G 
Sbjct: 88  SDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGD 147

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
             H      G   N+F GN LVAMY +CG L +AR+V ++MP  DVV+WNS++  YA+ G
Sbjct: 148 SSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLG 207

Query: 211 RFDEALDVCREMES-LRIKPDADTMASLLP-----------------SVTNTSPENVL-- 250
           +   AL++  +M +    +PD  T+ ++LP                 +VT+   +N+   
Sbjct: 208 KPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVG 267

Query: 251 --------------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH--- 293
                             +F  +  K++VSWN M+A Y+      +AV L+ QM+     
Sbjct: 268 NCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIK 327

Query: 294 --------------------------------GIEPNAISVASVLPACGDLSALLLGRKI 321
                                           GI+PN +++ SVL  C  + AL+ G++I
Sbjct: 328 MDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEI 387

Query: 322 HRYVERKKLQPNLR---------LENALVDMYAKCGSLTEARTVFDQM--RCQDVVSWTS 370
           H Y  +  +  +LR         + N L+DMYAKC  +  AR +FD +  + +DVV+WT 
Sbjct: 388 HCYAIKYPM--DLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTV 445

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLC---PDSIAFVSVLSACSHAGLLEEGRY-YFKIM 426
           MI  Y   G    A+ L S+M     C   P++      L AC+    L  G+  +   +
Sbjct: 446 MIGGYSQHGDANKALELLSEMFEED-CQTRPNAFTISCALVACASLAALSIGKQIHAYAL 504

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             Q   VP      CL+D+  + G + +A  +   M ME NE  W SL+  
Sbjct: 505 RNQQNAVPLFVS-NCLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLMTG 553



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 118/480 (24%), Positives = 191/480 (39%), Gaps = 121/480 (25%)

Query: 171 LVAMYGKCGCLKEARRVLNDMPSKD--VVTWNSMVAGYAQNGRFDEALD----------- 217
           L++ Y   GCL  A  +L   P  D  V  WNS++  Y  NGR ++ L            
Sbjct: 65  LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWT 124

Query: 218 -----------VCREMESLRIKPDADTMASLLPSVTNTSPENVL-----------SVKEM 255
                       C E+ S+R    +  ++ +   ++N    N L             +++
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKV 184

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDLSA 314
           F ++   ++VSWN +I  YA    P  A++++ +M    G  P+ I++ +VLP C  +  
Sbjct: 185 FDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGT 244

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM--- 371
             LG++ H +    ++  N+ + N LVDMYAK G + EA TVF  M  +DVVSW +M   
Sbjct: 245 RSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAG 304

Query: 372 --------------------------------ISAYGMSGQGYDAVALFSKMLMSGLCPD 399
                                           IS Y   G GY+A+ +  +ML SG+ P+
Sbjct: 305 YSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364

Query: 400 SIAFVSVLSACSHAGLLEEGR----YYFKI------------------MTEQYKLVPRIE 437
            +  +SVLS C+  G L  G+    Y  K                   + + Y    +++
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVD 424

Query: 438 HFACLVDLL-----------------GRAGKVEEAYDLIKQMPME-----PNERIWGSLV 475
               + D L                  + G   +A +L+ +M  E     PN       +
Sbjct: 425 IARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL 484

Query: 476 AACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSN----IYAKAGRWGDVKRVRKFMNSK 531
            AC   + + IG     H + L   Q+   + +SN    +YAK G  GD + V   M  K
Sbjct: 485 VACASLAALSIG--KQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEK 542



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 7/149 (4%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++HA  + NQ       +   L+  Y  CG + D R VFD +  KN V +  L+  Y  
Sbjct: 497 KQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGM 556

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +    +AL +++ M   GF  D  T   VL ACS S  +  G++      ++  D+ +  
Sbjct: 557 HGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEY---FNRMKTDFGVSP 613

Query: 168 GNG----LVAMYGKCGCLKEARRVLNDMP 192
           G      LV + G+ G L  A R++ +MP
Sbjct: 614 GPEHYACLVDLLGRAGRLNAALRLIEEMP 642


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 181/530 (34%), Positives = 295/530 (55%), Gaps = 67/530 (12%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VF+ I   N++ +N + R +  +     AL +Y  M   G  P+ YT+P +LK+C+   +
Sbjct: 19  VFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKA 78

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMY------------------------------ 175
              GLQIH  V+K+G + +L+    L++MY                              
Sbjct: 79  SKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTG 138

Query: 176 -GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
               G ++ AR + +++P KDVV+WN+M++GY + G + EAL++ +EM    ++PD  TM
Sbjct: 139 YASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTM 198

Query: 235 ASLLPS---------------------------VTNTSPENVLSVKEM------FLKLDN 261
            +++ +                           + N   +      EM      FL L  
Sbjct: 199 VTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSY 258

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           K+++SWN++I  Y + ++  EA+ L+ +M   G  PN +++ S+L AC  L A+ +GR I
Sbjct: 259 KDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWI 318

Query: 322 HRYVER--KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
           H Y+++  K +     L  +L+DMY+KCG +  A  VF+ M  + + +W +MI  + M G
Sbjct: 319 HVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHG 378

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
           +   A  +FS+M  + + PD I FV +LSACSHAG+L+ GR+ F+ MT  YK+ P++EH+
Sbjct: 379 RANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHY 438

Query: 440 ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
            C++DLLG +G  +EA ++I  M MEP+  IW SL+ AC ++ N+++G   A ++F + P
Sbjct: 439 GCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEP 498

Query: 500 NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           N  G YVLLSNIYA AGRW +V R+R  +N KG+KK+PG +S+E++  V 
Sbjct: 499 NNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVH 548



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 159/348 (45%), Gaps = 37/348 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y + G +   R++FDEI  K+VV +N +I  YV    Y +AL ++K M      PD
Sbjct: 135 LVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPD 194

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   V+ A + S S+ +G Q+H  +   G   NL   N L+  Y KCG ++ A  +  
Sbjct: 195 ESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFL 254

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
            +  KDV++WN ++ GY     + EAL + +EM      P+  TM S+L +         
Sbjct: 255 GLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDI 314

Query: 241 --------------VTNTSP------------ENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
                         VTN S              ++ +  ++F  + +K+L +WN MI  +
Sbjct: 315 GRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGF 374

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPN 333
           A +     A D++ +M  + I+P+ I+   +L AC     L LGR I R +    K+ P 
Sbjct: 375 AMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPK 434

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQ 380
           L     ++D+    G   EA  +   M  + D V W S++ A  M G 
Sbjct: 435 LEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGN 482



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 162/342 (47%), Gaps = 22/342 (6%)

Query: 23  STQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD 82
           ST  T++S  A      +   I+  +++H+ I  +    SN  I   L+  Y  CG+M  
Sbjct: 196 STMVTVISASA------RSGSIELGRQVHSWIA-DHGFGSNLKIVNALIDFYSKCGEMET 248

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
              +F  ++ K+V+ +N+LI  Y +  LY +AL +++ M   G  P+  T   +L AC+ 
Sbjct: 249 ACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAH 308

Query: 143 SNSLLVGLQIHCSVVK--VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWN 200
             ++ +G  IH  + K   G+         L+ MY KCG ++ A +V N M  K +  WN
Sbjct: 309 LGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWN 368

Query: 201 SMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD 260
           +M+ G+A +GR + A D+   M    IKPD  T   LL + ++    ++   + +F  + 
Sbjct: 369 AMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDL--GRHIFRSMT 426

Query: 261 NK-----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           +       L  +  MI +  ++ +  EA ++   M    +EP+ +   S+L AC     +
Sbjct: 427 HNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMT---MEPDGVIWCSLLKACKMHGNV 483

Query: 316 LLGRKIHRYVERKKLQPNLRLENALV-DMYAKCGSLTEARTV 356
            LG K  + +   K++PN      L+ ++YA  G   E   +
Sbjct: 484 ELGEKFAQNL--FKIEPNNPGSYVLLSNIYATAGRWNEVARI 523


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 170/486 (34%), Positives = 295/486 (60%), Gaps = 38/486 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNK----NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           L+  Y   G + + + +F E+ +     N++ +N +I  + ++ LY +A+ ++ +M + G
Sbjct: 186 LVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRG 245

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           F+PD  T   VL A      L++G+ IH  V+K GL  +    + L+ MYGKC C  E  
Sbjct: 246 FEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMS 305

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           +V + M   DV + N+ + G ++NG+ + +L + R++                       
Sbjct: 306 QVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQL----------------------- 342

Query: 246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                  K+  ++L   N+VSW  MIA  + N    EA++L+ +M++ G++PN++++  +
Sbjct: 343 -------KDQGMEL---NVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCL 392

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           LPACG+++AL+ G+  H +  R+ +  ++ + +AL+DMYAKCG +  +R  FD +  +++
Sbjct: 393 LPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNL 452

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           V W ++I+ Y M G+  +A+ +F  M  SG  PD I+F  VLSACS +GL EEG YYF  
Sbjct: 453 VCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNS 512

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M+ +Y +  R+EH+AC+V LL RAGK+E+AY +I++MP+ P+  +WG+L+++C +++N+ 
Sbjct: 513 MSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVS 572

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMN 544
           +G +AA+ +F L P+  G Y+LLSNIYA  G W +V RVR  M +KG++K PG S +E+ 
Sbjct: 573 LGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVK 632

Query: 545 DQVQII 550
           ++V ++
Sbjct: 633 NKVHML 638



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 136/494 (27%), Positives = 228/494 (46%), Gaps = 76/494 (15%)

Query: 19  ALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACG 78
           AL+ S Q+T+      N +      +   ++ HA I+    L ++  +  KL+  Y    
Sbjct: 9   ALLDSVQHTIF-----NCLNSTTASLSQTRQAHAHIL-KTGLFNDTHLATKLLSHYANNM 62

Query: 79  QMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLK 138
              D   V D +   NV  F+ LI ++   + ++ AL  +  M   G  PD    P  +K
Sbjct: 63  CFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVK 122

Query: 139 ACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVT 198
           AC+G ++L    Q+H      G D + F  + LV MY KC  +++A RV + M   DVV+
Sbjct: 123 ACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVS 182

Query: 199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLK 258
           W+++VA YA+ G  DEA  +  EM    ++P                             
Sbjct: 183 WSALVAAYARQGCVDEAKRLFSEMGDSGVQP----------------------------- 213

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
               NL+SWN MIA + ++ + +EAV ++L M + G EP+  +++SVLPA GDL  L++G
Sbjct: 214 ----NLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMG 269

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD-------------- 364
             IH YV ++ L  +  + +AL+DMY KC   +E   VFDQM   D              
Sbjct: 270 ILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRN 329

Query: 365 ---------------------VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
                                VVSWTSMI+    +G+  +A+ LF +M ++G+ P+S+  
Sbjct: 330 GQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTI 389

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
             +L AC +   L  G+      + +  +   +   + L+D+  + G+++ +      +P
Sbjct: 390 PCLLPACGNIAALMHGKAA-HCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIP 448

Query: 464 MEPNERIWGSLVAA 477
            + N   W +++A 
Sbjct: 449 TK-NLVCWNAVIAG 461



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 124/311 (39%), Gaps = 63/311 (20%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y  CG++  +R  FD I  KN+V +N +I  Y  +    +A+ ++  M   G
Sbjct: 423 VGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSG 482

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             PD  ++ CVL ACS S                                   G  +E  
Sbjct: 483 QKPDIISFTCVLSACSQS-----------------------------------GLTEEGS 507

Query: 186 RVLNDMPSK-----DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
              N M SK      V  +  MV   ++ G+ ++A  + R M    + PDA    +LL S
Sbjct: 508 YYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMP---VNPDACVWGALLSS 564

Query: 241 --VTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
             V N      ++ +++F +L+  N  ++ ++  +YA+  M  E   +   M+  G+  N
Sbjct: 565 CRVHNNVSLGEVAAEKLF-ELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKN 623

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL-----RLENALVDMYAKCGSLTEA 353
                   P C   S + +  K+H  +   K  P +     +L+   ++M  K G   E 
Sbjct: 624 --------PGC---SWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEM-KKLGYFPEI 671

Query: 354 RTVFDQMRCQD 364
             V   +  QD
Sbjct: 672 NFVLQDVEEQD 682


>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Glycine max]
          Length = 566

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 189/556 (33%), Positives = 309/556 (55%), Gaps = 30/556 (5%)

Query: 13  TTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMR 72
           T+  ++++  S+ + L S  +   +L      + L+++HA II       +  + L + R
Sbjct: 11  TSTSMRSISHSSPFRLHSAASITTLLKACKKREHLEQVHACIIHRGLEQDHFLVFLFISR 70

Query: 73  TYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYT 132
            +     +     VF  +   + V +N LI+S+    L+   L  +  M  HG  PD +T
Sbjct: 71  AHTLLSTLSYASSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFT 130

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           YP V+KACSG+     G  +H S  + G+D +L+ G  L+ MYGKCG + +AR+V + M 
Sbjct: 131 YPSVIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMS 190

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP--------SVTNT 244
            ++VV+W +M+ GY   G   EA  +  EM    +      +   +          V + 
Sbjct: 191 DRNVVSWTAMLVGYVAVGDVVEARKLFDEMPHRNVASWNSMLQGFVKMGDLSGARGVFDA 250

Query: 245 SPE-NVLSVKEMF-------------LKLD---NKNLVSWNVMIAVYANNSMPAEAVDLY 287
            PE NV+S   M                 D    K++V+W+ +I+ Y  N +P +A+ ++
Sbjct: 251 MPEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVF 310

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN---ALVDMY 344
           L+ME+  ++P+   + S++ A   L  L L + +  YV   K+  +L+ ++   AL+DM 
Sbjct: 311 LEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVS--KICIDLQQDHVIAALLDMN 368

Query: 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404
           AKCG++  A  +FD+   +DVV + SMI    + G+G +AV LF++MLM GL PD +AF 
Sbjct: 369 AKCGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFT 428

Query: 405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM 464
            +L+ACS AGL++EGR YF+ M ++Y + P  +H+AC+VDLL R+G + +AY+LIK +P 
Sbjct: 429 VILTACSRAGLVDEGRNYFQSMKQKYCISPLPDHYACMVDLLSRSGHIRDAYELIKLIPW 488

Query: 465 EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV 524
           EP+   WG+L+ AC LY + ++G + A+ +F L P  +  YVLLS+IYA A RW DV  V
Sbjct: 489 EPHAGAWGALLGACKLYGDSELGEIVANRLFELEPLNAANYVLLSDIYAAAERWIDVSLV 548

Query: 525 RKFMNSKGIKKMPGAS 540
           R  M  + ++K+PG+S
Sbjct: 549 RSKMRERRVRKIPGSS 564


>gi|297738569|emb|CBI27814.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 196/561 (34%), Positives = 302/561 (53%), Gaps = 78/561 (13%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD-TRHVFDEITNK 93
           N +L+    +  L ++HA ++ N     N  +  KL+ T       +D  R +FD++  +
Sbjct: 33  NYLLNCCSSLPDLSRIHALVVTNG-CGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKR 91

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           +V  +N LIR Y +     +AL +Y NM   G  PD YT+P V+++C+  ++L  G ++H
Sbjct: 92  DVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVH 151

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
           C++VK G D ++F  + LVAMY + G       V  +M  +++V+W +++AGY QN  F 
Sbjct: 152 CNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFK 211

Query: 214 EALDVCREMESLRIKPDADTMASLLP---------------------------SVTNT-- 244
           E L V REM     +P+A T+ S+LP                           S+TN   
Sbjct: 212 EGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALI 271

Query: 245 ----SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                  NV + + +F  +  +NLVSWN MIA Y  N+  A AV L+ +M+   ++ + I
Sbjct: 272 ALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYI 331

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           ++ SV+ A               Y+                           AR VF+++
Sbjct: 332 TMVSVISA---------------YL---------------------------AREVFERL 349

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
            C+ VVSWTSMI A    G G DA+ LFS+M   G+ P+S  F +V +AC H+GL+EEGR
Sbjct: 350 PCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGR 409

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
            +F+ M   Y ++P +EH AC+VDLLGRAG + EAY+ I +MP+EP+  +WG+L+ +C +
Sbjct: 410 KHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRI 469

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           +SN+++  L A+ +F L P    +YVL+SNIYA+AGRW D  R+RK M  + +KK+PG S
Sbjct: 470 HSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHS 529

Query: 541 -VEMNDQVQIIALPLRSSKCL 560
            VE+N +        RS   L
Sbjct: 530 LVEVNRRFHTFLSGSRSQSSL 550


>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
          Length = 1017

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 202/559 (36%), Positives = 314/559 (56%), Gaps = 42/559 (7%)

Query: 26  YTLLSG-DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR 84
           YT++S   AC    D +   K  K++HA ++ +    S   +   L+  Y  CG+M    
Sbjct: 248 YTIVSALTAC----DGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAE 303

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
            +  ++ N +VV +N LI+ YV N +Y +AL  + +M   G   D  +   ++ A    +
Sbjct: 304 RILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLS 363

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
           +LL G+++H  V+K G D NL  GN L+ MY KC       R    M  KD+++W +++A
Sbjct: 364 NLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIA 423

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM--------- 255
           GYAQN    EAL++ R++   R++ D   + S+L +  ++  +++L VKE+         
Sbjct: 424 GYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRA--SSVLKSMLIVKEIHCHILRKGL 481

Query: 256 -------------------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
                                    F  +  K++VSW  MI+  A N   +EAV+L+ +M
Sbjct: 482 LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM 541

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
              G+  +++++  +L A   LSAL  GR+IH Y+ RK       +  A+VDMYA CG L
Sbjct: 542 VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL 601

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
             A+ VFD++  + ++ +TSMI+AYGM G G  AV LF KM    + PD I+F+++L AC
Sbjct: 602 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYAC 661

Query: 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI 470
           SHAGLL+EGR + KIM  +Y+L P  EH+ CLVD+LGRA  V EA++ +K M  EP   +
Sbjct: 662 SHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEV 721

Query: 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530
           W +L+AAC  +S  +IG +AA  +  L P   G  VL+SN++A+ GRW DV++VR  M +
Sbjct: 722 WCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKA 781

Query: 531 KGIKKMPGAS-VEMNDQVQ 548
            G++K PG S +EM+ +V 
Sbjct: 782 SGMEKHPGCSWIEMDGKVH 800



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 186/372 (50%), Gaps = 37/372 (9%)

Query: 77  CGQ--MVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYP 134
           CG+   V    VFDE+ ++    +N +I +YV+N     AL +Y NM V G      ++P
Sbjct: 90  CGKRRAVSQEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFP 149

Query: 135 CVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK 194
            +LKAC+    +  G ++H  +VK+G     F  N LV+MY K   L  ARR+ +    K
Sbjct: 150 ALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEK 209

Query: 195 -DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM------------------- 234
            D V WNS+++ Y+ +G+  E L++ REM      P++ T+                   
Sbjct: 210 GDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEI 269

Query: 235 -ASLLPSVTNTSPENVLS--------------VKEMFLKLDNKNLVSWNVMIAVYANNSM 279
            AS+L S T++S   V +               + +  +++N ++V+WN +I  Y  N M
Sbjct: 270 HASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLM 329

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
             EA++ +  M   G + + +S+ S++ A G LS LL G ++H YV +     NL++ N 
Sbjct: 330 YKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNT 389

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           L+DMY+KC         F +M  +D++SWT++I+ Y  +    +A+ LF  +    +  D
Sbjct: 390 LIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEID 449

Query: 400 SIAFVSVLSACS 411
            +   S+L A S
Sbjct: 450 EMILGSILRASS 461



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 16/235 (6%)

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
            +S +++F ++ ++   +WN MI  Y +N  PA A+ LY  M V G+     S  ++L A
Sbjct: 95  AVSQEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKA 154

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVS 367
           C  L  +  G ++H  + +        + NALV MYAK   L+ AR +FD  + + D V 
Sbjct: 155 CAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVL 214

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W S++S+Y  SG+  + + LF +M M+G  P+S   VS L+AC       +G  Y K+  
Sbjct: 215 WNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTAC-------DGFSYAKLGK 267

Query: 428 EQYKLVPR-----IEHFAC--LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
           E +  V +      E + C  L+ +  R GK+ +A  +++QM    +   W SL+
Sbjct: 268 EIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMN-NADVVTWNSLI 321


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 167/503 (33%), Positives = 286/503 (56%), Gaps = 37/503 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +K+HA+I+ N    ++  +   L+  YG CG   + R VFD++  +++V +NV+I  YV 
Sbjct: 227 RKIHAEIVANG-FDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVL 285

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N  +++AL +Y+ + + GF     T+  +L ACS   +L  G  +H  +++ GLD  +  
Sbjct: 286 NGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAV 345

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              LV MY KCG L+EAR+V N M ++D V W++++  YA NG   +A            
Sbjct: 346 ATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDAR----------- 394

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
                                    +++F +L +++ +SWN MI  Y  N     A+ ++
Sbjct: 395 -----------------------KARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIF 431

Query: 288 LQME-VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
            +M    G++P+A++  +VL AC  L  L   + +H  +   +L+ N+ + N L++MYA+
Sbjct: 432 REMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYAR 491

Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
           CGSL EA  +F   + + VVSWT+M++A+   G+  +A+ LF +M + G+ PD + + S+
Sbjct: 492 CGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSI 551

Query: 407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP 466
           L  C+H G LE+G  YF  M E + L P  +HFA +VDLLGR+G++ +A +L++ MP EP
Sbjct: 552 LFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEP 611

Query: 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526
           +   W + + AC ++  +++G  AA+ ++ L P+ +  Y+ +SNIYA  G W  V  VRK
Sbjct: 612 DPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRK 671

Query: 527 FMNSKGIKKMPGAS-VEMNDQVQ 548
            M  +G+KK+PG S +E++ ++ 
Sbjct: 672 KMEERGLKKLPGLSFIEVDGKLH 694



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 152/524 (29%), Positives = 251/524 (47%), Gaps = 84/524 (16%)

Query: 28  LLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVF 87
           L S  +C D+++        + LH +I  ++    +  +G  L+  YG C  +VD R VF
Sbjct: 14  LCSCSSCGDVVEG-------RALHERIRCSR-FERDTMVGNALISMYGKCDSLVDARSVF 65

Query: 88  DEI--TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           + +    +NVV +N +I +Y  N    +AL +Y  M++ G   D  T+  VL ACS   S
Sbjct: 66  ESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS---S 122

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           L  G +IH  V   GLD      N LV MY + G + +A+R+   + ++D  +WN+++  
Sbjct: 123 LAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILA 182

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADT---------MASLLPSVTNTSPENVLS----- 251
           ++Q+G +  AL + +EM+   +KP++ T            +LP       E V +     
Sbjct: 183 HSQSGDWSGALRIFKEMK-CDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTD 241

Query: 252 -------------------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
                               +E+F K+  +++VSWNVMI  Y  N    EA++LY ++++
Sbjct: 242 LVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDM 301

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
            G +    +  S+L AC  + AL  GR +H ++  + L   + +  ALV+MYAKCGSL E
Sbjct: 302 EGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEE 361

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYD----------------------------- 383
           AR VF+ M+ +D V+W+++I AY  +G G D                             
Sbjct: 362 ARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQN 421

Query: 384 -----AVALFSKML-MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
                A+ +F +M   +GL PD++ F++VL AC+  G L E +     ++E  +L   + 
Sbjct: 422 GCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISES-ELESNVV 480

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
               L+++  R G +EEA  L      E     W ++VAA   Y
Sbjct: 481 VTNTLINMYARCGSLEEAERLFAAAK-EKTVVSWTAMVAAFSQY 523



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 183/382 (47%), Gaps = 35/382 (9%)

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           PD  T+  VL +CS    ++ G  +H  +     + +   GN L++MYGKC  L +AR V
Sbjct: 5   PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 188 LNDMP--SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN-- 243
              M    ++VV+WN+M+A YAQNG   EAL +   M    +  D  T  S+L + ++  
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA 124

Query: 244 -----------------TSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYA 275
                             S  N L             K MF  L  ++  SWN +I  ++
Sbjct: 125 QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHS 184

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            +   + A+ ++ +M+   ++PN+ +  +V+        L  GRKIH  +       +L 
Sbjct: 185 QSGDWSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLV 243

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           +  AL++MY KCGS  EAR VFD+M+ +D+VSW  MI  Y ++G  ++A+ L+ K+ M G
Sbjct: 244 VATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEG 303

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
                  FVS+L ACS    L +GR     + E+  L   +     LV++  + G +EEA
Sbjct: 304 FKRTKATFVSILGACSSVKALAQGRLVHSHILER-GLDSEVAVATALVNMYAKCGSLEEA 362

Query: 456 YDLIKQMPMEPNERIWGSLVAA 477
             +   M    +   W +L+ A
Sbjct: 363 RKVFNAMK-NRDAVAWSTLIGA 383



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 101/185 (54%), Gaps = 9/185 (4%)

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
           +P+ ++  +VL +C     ++ GR +H  +   + + +  + NAL+ MY KC SL +AR+
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 356 VFDQM--RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
           VF+ M  R ++VVSW +MI+AY  +G   +A+ L+ +M + GL  D + FVSVL ACS  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS- 122

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFA-CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG 472
             L +GR     +   Y  +   +  A  LV +  R G V +A  + + +    +E  W 
Sbjct: 123 --LAQGREIHNRVF--YSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR-DETSWN 177

Query: 473 SLVAA 477
           +++ A
Sbjct: 178 AVILA 182


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 166/494 (33%), Positives = 279/494 (56%), Gaps = 36/494 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +K+HA+I+ N    S+  +   L+  YG CG   + R VFD++  +++V +NV+I  YV 
Sbjct: 227 RKIHAEIVANG-FDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQ 285

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N  +++AL +Y+ + + GF     T+  +L ACS   +L  G  +H  +++ GLD  +  
Sbjct: 286 NGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAV 345

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              LV MY KCG L+EAR+V N M ++D V W++++  YA NG   +A            
Sbjct: 346 ATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDAR----------- 394

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
                                    +++F +L +++ + WN MI  Y  N     A+ ++
Sbjct: 395 -----------------------KARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIF 431

Query: 288 LQME-VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
            +M    G++P+A++  +VL AC  L  L   + +H  +   +L+ N+ + N L++MYA+
Sbjct: 432 REMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYAR 491

Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
           CGSL EA  +F   + + VVSWT+M++A+   G+  +A+ LF +M + G+ PD + + S+
Sbjct: 492 CGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSI 551

Query: 407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP 466
           L  C+H G LE+G  YF  M E + L P  +HFA +VDLLGR+G++ +A +L++ MP EP
Sbjct: 552 LFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEP 611

Query: 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526
           +   W + + AC ++  +++G  AA+ ++ L P+ +  Y+ +SNIYA  G W  V  VRK
Sbjct: 612 DPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRK 671

Query: 527 FMNSKGIKKMPGAS 540
            M  +G+KK+PG S
Sbjct: 672 KMEERGLKKLPGLS 685



 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 149/509 (29%), Positives = 245/509 (48%), Gaps = 77/509 (15%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI--TNKNVVFFNV 100
           D+   + LH +I  ++    +  +G  L+  YG C  +VD R VF+ +    +NVV +N 
Sbjct: 22  DVAEGRALHERIRCSR-FERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNA 80

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           +I +Y  N    +AL +Y  M++ G   D  T+  VL ACS   SL  G +IH  V   G
Sbjct: 81  MIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS---SLAQGREIHNRVFYSG 137

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
           LD      N LV MY + G + +A+R+   + ++D  +WN+++  ++Q+G +  AL + +
Sbjct: 138 LDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFK 197

Query: 221 EMESLRIKPDADT---------MASLLPSVTNTSPENVLS-------------------- 251
           EM+   +KP++ T            +LP       E V +                    
Sbjct: 198 EMK-CDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCG 256

Query: 252 ----VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                +E+F K+  +++VSWNVMI  Y  N    EA++LY ++++ G +    +  S+L 
Sbjct: 257 SSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILG 316

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           AC  + AL  GR +H ++  + L   + +  ALV+MYAKCGSL EAR VF+ M+ +D V+
Sbjct: 317 ACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVA 376

Query: 368 WTSMISAYGMSGQGYD----------------------------------AVALFSKML- 392
           W+++I AY  +G G D                                  A+ +F +M  
Sbjct: 377 WSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTG 436

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
            +GL PD++ F++VL AC+  G L E +     ++E  +L   +     L+++  R G +
Sbjct: 437 AAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISES-ELESNVVVTNTLINMYARCGSL 495

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLY 481
           EEA  L      E     W ++VAA   Y
Sbjct: 496 EEAERLFAAAK-EKTVVSWTAMVAAFSQY 523



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 181/382 (47%), Gaps = 35/382 (9%)

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           PD  T+  VL +CS    +  G  +H  +     + +   GN L++MYGKC  L +AR V
Sbjct: 5   PDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 188 LNDMP--SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN-- 243
              M    ++VV+WN+M+A YAQNG   EAL +   M    +  D  T  S+L + ++  
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA 124

Query: 244 -----------------TSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYA 275
                             S  N L             K MF  L  ++  SWN +I  ++
Sbjct: 125 QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHS 184

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            +   + A+ ++ +M+   ++PN+ +  +V+        L  GRKIH  +       +L 
Sbjct: 185 QSGDWSGALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLV 243

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           +  AL++MY KCGS  EAR VFD+M+ +D+VSW  MI  Y  +G  ++A+ L+ K+ M G
Sbjct: 244 VATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEG 303

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
                  FVS+L ACS    L +GR     + E+  L   +     LV++  + G +EEA
Sbjct: 304 FKRTKATFVSILGACSSVKALAQGRLVHSHILER-GLDSEVAVATALVNMYAKCGSLEEA 362

Query: 456 YDLIKQMPMEPNERIWGSLVAA 477
             +   M    +   W +L+ A
Sbjct: 363 RKVFNAMK-NRDAVAWSTLIGA 383



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 9/185 (4%)

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
           +P+ ++  +VL +C     +  GR +H  +   + + +  + NAL+ MY KC SL +AR+
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 356 VFDQM--RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
           VF+ M  R ++VVSW +MI+AY  +G   +A+ L+ +M + GL  D + FVSVL ACS  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS- 122

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFA-CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG 472
             L +GR     +   Y  +   +  A  LV +  R G V +A  + + +    +E  W 
Sbjct: 123 --LAQGREIHNRVF--YSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR-DETSWN 177

Query: 473 SLVAA 477
           +++ A
Sbjct: 178 AVILA 182


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 198/608 (32%), Positives = 330/608 (54%), Gaps = 71/608 (11%)

Query: 12  STTKPVQALVLSTQ--YTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIG-- 67
           S++ P   L  S+   Y  L       +L     +++L+ +HAQ+I     ++N ++   
Sbjct: 12  SSSYPFHFLPSSSDPPYDSLRNHPSLSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKL 71

Query: 68  LKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD 127
           L+L         +     VF+ I   N++ +N + R +  +     AL +Y  M   G  
Sbjct: 72  LELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLL 131

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           P+ YT+P +LK+C+ S +   G QIH  V+K+G D +LF    L+++Y + G L++AR+V
Sbjct: 132 PNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKV 191

Query: 188 LN-------------------------------DMPSKDVVTWNSMVAGYAQNGRFDEAL 216
            +                               ++P KDVV+WN+M++GYA+ G + EAL
Sbjct: 192 FDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 251

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSP--------------------ENVLSVKEMF 256
           ++ +EM    I+PD  TM +++ +   +                      + V S+ +++
Sbjct: 252 ELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLY 311

Query: 257 LK-------------LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
            K             L  K+++SWN +I  Y + ++  EA+ L+ +M   G  PN +++ 
Sbjct: 312 SKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTML 371

Query: 304 SVLPACGDLSALLLGRKIHRYVERK-KLQPNLR-LENALVDMYAKCGSLTEARTVFDQMR 361
           S+LPAC  L A+ +GR IH Y++++ K   N   L  +L+DMYAKCG +  A  VF+ + 
Sbjct: 372 SILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSIL 431

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            + + SW +MI  + M G+   A  +FS+M   G+ PD I FV +LSACS +G+L+ GR+
Sbjct: 432 HKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRH 491

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
            F+ MT+ YK+ P++EH+ C++DLLG +G  +EA ++I  M MEP+  IW SL+ AC + 
Sbjct: 492 IFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIR 551

Query: 482 SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-AS 540
            N+++G   A ++  + P   G YVLLSNIYA AGRW +V ++R  +N KG+KK+PG +S
Sbjct: 552 GNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSS 611

Query: 541 VEMNDQVQ 548
           +E++  V 
Sbjct: 612 IEIDSVVH 619


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 183/507 (36%), Positives = 287/507 (56%), Gaps = 36/507 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  CG++ + R VFD +  K+VV +N +I  Y  N     AL V+  M   G + D
Sbjct: 163 LLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEID 222

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             +   VL AC     L VG ++H  V +  L   + + N LV MY KCG + EAR V +
Sbjct: 223 GASVVSVLPACGYLKELEVGRRVHGLVEEKVLGKKIVS-NALVDMYAKCGSMDEARLVFD 281

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL---PSVTNTSP 246
           +M  +DVV+W SM+ GY  NG    AL + + M+   ++P++ T+A +L    S+ N   
Sbjct: 282 NMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKD 341

Query: 247 ENVL-----------------SVKEM-------------FLKLDNKNLVSWNVMIAVYAN 276
              L                 S+ +M             F +   K  V WN +++   +
Sbjct: 342 GRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSGCVH 401

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N +  EA+ L+ +M + G+E NA +  S+LPA G L+ L     I+ Y+ R     N+++
Sbjct: 402 NKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILADLQPVNNINSYLMRSGFVSNIQV 461

Query: 337 ENALVDMYAKCGSLTEARTVFDQM--RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
             +L+D+Y+KCGSL  A  +F+ +    QD+  W+ +I+ YGM G G  AV+LF +M+ S
Sbjct: 462 ATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGETAVSLFKQMVQS 521

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           G+ P+ + F SVL +CSHAG++++G Y FK M + ++ +P  +H+ C+VDLLGRAG+++E
Sbjct: 522 GVKPNDVTFTSVLQSCSHAGMVDDGLYLFKFMLKDHQTIPNDDHYTCMVDLLGRAGRMDE 581

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           AYDLIK MP  P   +WG+L+ AC ++ N+++G +AA  +F L P  +G YVLL+ +YA 
Sbjct: 582 AYDLIKTMPFMPGHAVWGALLGACVMHENVELGEVAARWLFELEPGNTGNYVLLAKLYAA 641

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGASV 541
            GRW D + VR+ M+  G++K P  S+
Sbjct: 642 LGRWEDAENVRQRMDDIGLRKAPAHSL 668



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 149/525 (28%), Positives = 262/525 (49%), Gaps = 48/525 (9%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLK--LMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           + + K+LHA +I +  L    SI ++  L+ TY  CG + + R +FDE+  +  + +N +
Sbjct: 37  LTSTKQLHAHLITSGLL----SIDIRSVLVATYAHCGYVHNARKLFDELRQRGTLLYNFM 92

Query: 102 IRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           I+ Y+    Y++A+ V+  M       PD YTYP V+KACS    +  G  +H   +   
Sbjct: 93  IKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLLVEYGRVLHGLTLVSK 152

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
              +LF  N L+AMY  CG ++EAR+V + M  K VV+WN+M+ GY +NG  + AL V  
Sbjct: 153 FGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFN 212

Query: 221 EMESLRIKPDADTMASLLPS------------VTNTSPENVL-----------------S 251
           +M    ++ D  ++ S+LP+            V     E VL                 S
Sbjct: 213 QMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLGKKIVSNALVDMYAKCGS 272

Query: 252 VKEMFLKLDN---KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           + E  L  DN   +++VSW  MI  Y  N     A+ L+  M++ G+ PN++++A +L A
Sbjct: 273 MDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLA 332

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  L+ L  GR +H +V +++L   + +E +L+DMYAKC  L  + +VF +   +  V W
Sbjct: 333 CASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPW 392

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            +++S    +    +A+ LF KMLM G+  ++    S+L A    G+L + +    I + 
Sbjct: 393 NALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPA---YGILADLQPVNNINSY 449

Query: 429 QYK--LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE-RIWGSLVAACCLYSNMD 485
             +   V  I+    L+D+  + G +E A+ +   +P++  +  +W  ++A   ++ + +
Sbjct: 450 LMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGE 509

Query: 486 IGILAADHIFH--LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
             +     +    + PN   +  +L +  + AG   D   + KFM
Sbjct: 510 TAVSLFKQMVQSGVKPNDVTFTSVLQSC-SHAGMVDDGLYLFKFM 553


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 186/542 (34%), Positives = 301/542 (55%), Gaps = 40/542 (7%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT----RHVFDEITN 92
           IL +    K L+++HA ++  + L  +P I   ++ +  A   + DT      +F+ I  
Sbjct: 27  ILQQCKTPKDLQQVHAHLLKTRRL-LDPIITEAVLES--AALLLPDTIDYALSIFNHIDK 83

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
                +NV+IR         +AL ++K M       D +T+  VLKACS   +L  G Q+
Sbjct: 84  PESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQV 143

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  ++K G   N F  N L+ MY  CG +  AR V + MP + +V WNSM++GY +NG +
Sbjct: 144 HALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLW 203

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSV-----------------------TNTSPENV 249
           DE + + R++  LRI+ D  TM S+L +                         NT   ++
Sbjct: 204 DEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSL 263

Query: 250 L----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
           +          + +++F ++D +++V+W+ MI+ YA      EA++L+ +M+   + PN 
Sbjct: 264 IDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNE 323

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           +++ SVL +C  L A   G+ +H Y+++KK++  + L   L+D YAKCG +  +  VF +
Sbjct: 324 VTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKE 383

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
           M  ++V +WT++I     +G+G  A+  FS ML + + P+ + F+ VLSACSHA L+++G
Sbjct: 384 MSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQG 443

Query: 420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
           R+ F  M   + + PRIEH+ C+VD+LGRAG +EEAY  I  MP  PN  +W +L+A+C 
Sbjct: 444 RHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCR 503

Query: 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA 539
            + N+++   + +HI  L P  SG Y+LLSN YA  GR  D  RVR  +  K IKK+PG 
Sbjct: 504 AHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGC 563

Query: 540 SV 541
           S+
Sbjct: 564 SL 565


>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
 gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 173/463 (37%), Positives = 266/463 (57%), Gaps = 38/463 (8%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +F   T+ ++  +N  I++        +A+ +Y  + + G  PD Y+ P VLKA    ++
Sbjct: 78  IFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSA 137

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           + VG QIH   V   LD ++     L+ MY  CG + +AR++ + +  KDV  WN+MVAG
Sbjct: 138 VEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAG 197

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           Y + G    A  V  EM                       P+              +N++
Sbjct: 198 YVKVGELKSARKVFNEM-----------------------PQ--------------RNVI 220

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           SW  +IA YA  + P EA++L+ +M++  +EP+ I++ +VL AC DL AL LG  IH Y+
Sbjct: 221 SWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYI 280

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
           E+  L   + L NAL+DMYAK G++  A  VF+ M+ + V++W+++I+A  + G G +A+
Sbjct: 281 EKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAI 340

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
            +F +M  + + P+ + FV++LSACSH G+++ GRYYF  M   YK+ P+IEH+ C++DL
Sbjct: 341 DMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDL 400

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           L RAG ++EA  L+  MP E N  IWGSL+AA   + + ++  LA  H+  L P  SG Y
Sbjct: 401 LARAGYLQEAQKLLHDMPFEANAMIWGSLLAASNTHRDAELAQLALKHLAKLEPGNSGNY 460

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV-EMNDQV 547
           VLLSN YA  G+W +   VRK M + G+KK PG SV E+N+ V
Sbjct: 461 VLLSNTYAALGKWNESGTVRKLMRNAGVKKAPGGSVIEINNIV 503



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 137/293 (46%), Gaps = 11/293 (3%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y   G++   R VF+E+  +NV+ +  LI  Y      ++A+ +++ M +   +PD    
Sbjct: 198 YVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAM 257

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             VL AC+   +L +G  IH  + K GL   +   N L+ MY K G ++ A  V  +M  
Sbjct: 258 LAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQ 317

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV---- 249
           K V+TW++++A  A +G   EA+D+   ME  +++P+  T  ++L + ++    +V    
Sbjct: 318 KSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYY 377

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
               +   K++ K +  +  MI + A      EA  L   M     E NA+   S+L A 
Sbjct: 378 FDQMQSMYKIEPK-IEHYGCMIDLLARAGYLQEAQKLLHDMP---FEANAMIWGSLLAAS 433

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALV-DMYAKCGSLTEARTVFDQMR 361
                  L +   +++   KL+P       L+ + YA  G   E+ TV   MR
Sbjct: 434 NTHRDAELAQLALKHL--AKLEPGNSGNYVLLSNTYAALGKWNESGTVRKLMR 484


>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 884

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 202/559 (36%), Positives = 314/559 (56%), Gaps = 42/559 (7%)

Query: 26  YTLLSG-DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR 84
           YT++S   AC    D +   K  K++HA ++ +    S   +   L+  Y  CG+M    
Sbjct: 285 YTIVSALTAC----DGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAE 340

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
            +  ++ N +VV +N LI+ YV N +Y +AL  + +M   G   D  +   ++ A    +
Sbjct: 341 RILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLS 400

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
           +LL G+++H  V+K G D NL  GN L+ MY KC       R    M  KD+++W +++A
Sbjct: 401 NLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIA 460

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM--------- 255
           GYAQN    EAL++ R++   R++ D   + S+L +  ++  +++L VKE+         
Sbjct: 461 GYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRA--SSVLKSMLIVKEIHCHILRKGL 518

Query: 256 -------------------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
                                    F  +  K++VSW  MI+  A N   +EAV+L+ +M
Sbjct: 519 LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM 578

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
              G+  +++++  +L A   LSAL  GR+IH Y+ RK       +  A+VDMYA CG L
Sbjct: 579 VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL 638

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
             A+ VFD++  + ++ +TSMI+AYGM G G  AV LF KM    + PD I+F+++L AC
Sbjct: 639 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYAC 698

Query: 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI 470
           SHAGLL+EGR + KIM  +Y+L P  EH+ CLVD+LGRA  V EA++ +K M  EP   +
Sbjct: 699 SHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEV 758

Query: 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530
           W +L+AAC  +S  +IG +AA  +  L P   G  VL+SN++A+ GRW DV++VR  M +
Sbjct: 759 WCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKA 818

Query: 531 KGIKKMPGAS-VEMNDQVQ 548
            G++K PG S +EM+ +V 
Sbjct: 819 SGMEKHPGCSWIEMDGKVH 837



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 121/404 (29%), Positives = 202/404 (50%), Gaps = 45/404 (11%)

Query: 48  KKLHAQIIINQHLHSNPSIGL-----KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++LH++I       + PS  L     KL+  YG CG + D   VFDE+ ++    +N +I
Sbjct: 100 RQLHSRI-----FKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMI 154

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            +YV+N     AL +Y NM V G      ++P +LKAC+    +  G ++H  +VK+G  
Sbjct: 155 GAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYH 214

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCRE 221
              F  N LV+MY K   L  ARR+ +    K D V WNS+++ Y+ +G+  E L++ RE
Sbjct: 215 STGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFRE 274

Query: 222 MESLRIKPDADTM--------------------ASLLPSVTNTSPENVLS---------- 251
           M      P++ T+                    AS+L S T++S   V +          
Sbjct: 275 MHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCG 334

Query: 252 ----VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                + +  +++N ++V+WN +I  Y  N M  EA++ +  M   G + + +S+ S++ 
Sbjct: 335 KMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIA 394

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           A G LS LL G ++H YV +     NL++ N L+DMY+KC         F +M  +D++S
Sbjct: 395 ASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLIS 454

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
           WT++I+ Y  +    +A+ LF  +    +  D +   S+L A S
Sbjct: 455 WTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASS 498



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 16/231 (6%)

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           +++F ++ ++   +WN MI  Y +N  PA A+ LY  M V G+     S  ++L AC  L
Sbjct: 136 EKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKL 195

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSM 371
             +  G ++H  + +        + NALV MYAK   L+ AR +FD  + + D V W S+
Sbjct: 196 RDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSI 255

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           +S+Y  SG+  + + LF +M M+G  P+S   VS L+AC       +G  Y K+  E + 
Sbjct: 256 LSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTAC-------DGFSYAKLGKEIHA 308

Query: 432 LVPR-----IEHFAC--LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
            V +      E + C  L+ +  R GK+ +A  +++QM    +   W SL+
Sbjct: 309 SVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMN-NADVVTWNSLI 358



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 117/276 (42%), Gaps = 49/276 (17%)

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE---NALVDMYAKCGSLTEARTVF 357
           + A VL  CG   A+  GR++H  +   K  P+  L+     LV MY KCGSL +A  VF
Sbjct: 82  AFAYVLELCGKRRAVSQGRQLHSRI--FKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVF 139

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS------ 411
           D+M  +   +W +MI AY  +G+   A+AL+  M + G+     +F ++L AC+      
Sbjct: 140 DEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIR 199

Query: 412 -----HAGLLEEG------------------------RYYFKIMTEQYKLVPRIEHFACL 442
                H+ L++ G                        R  F    E+   V     +  +
Sbjct: 200 SGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVL----WNSI 255

Query: 443 VDLLGRAGKVEEAYDLIKQMPME---PNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
           +     +GK  E  +L ++M M    PN     S + AC  +S   +G      +   + 
Sbjct: 256 LSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSST 315

Query: 500 NQSGYYV--LLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           + S  YV   L  +Y + G+    +R+ + MN+  +
Sbjct: 316 HSSELYVCNALIAMYTRCGKMPQAERILRQMNNADV 351


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 186/516 (36%), Positives = 290/516 (56%), Gaps = 46/516 (8%)

Query: 43   DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
            D +T  ++HA +  + H   +  IG  L+  Y  C    + R VF+ +  +N+V +N LI
Sbjct: 907  DSRTGVQVHALVSKSPHA-KDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLI 965

Query: 103  RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-L 161
              Y  N    +AL ++ +M   GF PD  T   V+ AC+G  +   G Q+H  VVK    
Sbjct: 966  TCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRF 1025

Query: 162  DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
              ++   N LV MY KCG  + AR V + M S+ VV+  S++ GYA++            
Sbjct: 1026 REDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSA----------- 1074

Query: 222  MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
                                      NV   + +F ++  KN+++WNV+IA YA N    
Sbjct: 1075 --------------------------NVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEE 1108

Query: 282  EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE---- 337
            EA+ L+++++   + P   +  +VL ACG+++ L LG++ H +V ++  + +   E    
Sbjct: 1109 EALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVF 1168

Query: 338  --NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
              N+LVDMY K GS+ +   VF++M  +D VSW +MI  +  +G+  DA+ LF +ML S 
Sbjct: 1169 VGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSK 1228

Query: 396  LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
              PDS+  + VLSAC H+GL+EEGR YF+ MTE + ++P  +H+ C++DLLGRAG ++E 
Sbjct: 1229 ESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEV 1288

Query: 456  YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
             +LIK+M MEP+  +W SL+ +C L+ N+++G  AA  +F L P  SG YVLLSN+YA+ 
Sbjct: 1289 EELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAEL 1348

Query: 516  GRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            G+W DV RVR  M  +G+ K PG S +E+  +V + 
Sbjct: 1349 GKWADVFRVRSSMKHRGVSKQPGCSWIEIGRKVSVF 1384



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 143/518 (27%), Positives = 240/518 (46%), Gaps = 69/518 (13%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   ++LH  I   +   SN  +G  L+  YG C  + D R  FD+I   N + +NV++
Sbjct: 166 DLCGARQLHGHIA-KRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIV 224

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
           R Y    +   A+ ++  M   G  P  YT    + AC  +N+L  G  IH  V++ G +
Sbjct: 225 RRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYE 284

Query: 163 YNLFNGNGLVAMYGKCGCLK-------------------------------EARRVLNDM 191
           +++   + +V MY KCG +                                +A+RV   M
Sbjct: 285 HHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGM 344

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN-------- 243
             +++V+WN+M+ GY ++     AL + ++M     + DA T+ S+L + T         
Sbjct: 345 KERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGE 404

Query: 244 ------------TSPENVLSVKEMFLKL---------------DNKNLVSWNVMIAVYAN 276
                       +SP    ++  M+ K                  ++  SWN +I+ Y  
Sbjct: 405 EVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYER 464

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           +SM   A+    +M+   + PN  + +S L AC ++  L  G +IH Y+ RK  + +  L
Sbjct: 465 HSMSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDIL 523

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            + L+DMY KC     +  +F+    +DV+ W SMI     SG+G   + LF +M   G+
Sbjct: 524 RSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGI 583

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
             DS+ F+  L +C   G +  GR YF +M ++  ++PRIEH+ C+++LLG+ G + E  
Sbjct: 584 KADSVTFLGALVSCISEGHVRLGRSYFTLMMDE-SIIPRIEHYECMIELLGKHGCMVELE 642

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
           D ++ MP EP   +W  +   C  Y N  +G  AA  I
Sbjct: 643 DFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAKCI 680



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 136/294 (46%), Gaps = 37/294 (12%)

Query: 169  NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
            N LV+ Y + G L +ARRV +++P  +  ++N++++ +A+ GR  +A             
Sbjct: 799  NTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADA------------- 845

Query: 229  PDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
                                    + +F  + + +  S+N +IA  A +S  A+A+    
Sbjct: 846  ------------------------RALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLA 881

Query: 289  QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
             M       NA S AS L AC        G ++H  V +     ++ + +AL+DMYAKC 
Sbjct: 882  AMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCE 941

Query: 349  SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
               EAR VF+ M  +++VSW S+I+ Y  +G   +A+ LF  M+ +G  PD +   SV+S
Sbjct: 942  WPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMS 1001

Query: 409  ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
            AC+      EGR     + +  +    +     LVD+  + G+   A  +  +M
Sbjct: 1002 ACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRM 1055



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 185/420 (44%), Gaps = 78/420 (18%)

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           F  N  +     CG + +AR + + MP +D  +WN+++   ++ G   EAL +   M SL
Sbjct: 86  FLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSL 145

Query: 226 RIKPDADTMASLLPS-----------------VTNTSPENVL----------------SV 252
            I+P   TMAS+L                          NV+                  
Sbjct: 146 GIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADA 205

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           +  F  +   N +SWNV++  Y    M   AVD++ +M   G+ P   +V+  + AC D 
Sbjct: 206 RRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDN 265

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL---------------------- 350
           +AL  GR IH +V R   + ++ + +++VDMYAKCG++                      
Sbjct: 266 NALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIV 325

Query: 351 ---------TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
                     +A+ VF+ M+ +++VSW +M++ Y  S     A+ LF +M       D+I
Sbjct: 326 SGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAI 385

Query: 402 AFVSVLSACSHAGLLEEGR----YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
              SVLSAC+  G+L+ G+    + F I    +   P +++   LV +  + G +  A  
Sbjct: 386 TLGSVLSACT--GILDIGKGEEVHAFAIKCGFFS-SPILKN--ALVRMYSKCGCLRSAER 440

Query: 458 LIK-QMPMEPNERIWGSLVAACCLYSNMDIGILAADHI-FHLAPNQSGYYVLL---SNIY 512
           L+  +M  E +   W SL++    +S  +  + A   +   + PNQS +   L   +NI+
Sbjct: 441 LLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSEVTPNQSTFSSALAACANIF 500



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 13/240 (5%)

Query: 3   AVVLLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHS 62
           A++L  +    T+   A+ L +  +     AC  ILD    I   +++HA   I     S
Sbjct: 368 ALLLFQQMRQETREFDAITLGSVLS-----ACTGILD----IGKGEEVHA-FAIKCGFFS 417

Query: 63  NPSIGLKLMRTYGACGQMVDTRHV--FDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKN 120
           +P +   L+R Y  CG +     +  F+  + ++   +N LI  Y  + +   AL+    
Sbjct: 418 SPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTK 477

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M      P+  T+   L AC+    L  G+QIH  +++ G + +    + L+ MY KC  
Sbjct: 478 MQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQ 536

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
              + R+    PS+DV+ WNSM+ G A +G+ +  LD+  EM+   IK D+ T    L S
Sbjct: 537 FDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVS 596



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 93/472 (19%), Positives = 165/472 (34%), Gaps = 77/472 (16%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  C Q   +  +F+   +++V+ +N +I     +      L ++  M   G   D
Sbjct: 527 LIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKAD 586

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T+   L +C     + +G      ++   +   + +   ++ + GK GC+ E    + 
Sbjct: 587 SVTFLGALVSCISEGHVRLGRSYFTLMMDESIIPRIEHYECMIELLGKHGCMVELEDFVE 646

Query: 190 DMPSKDVVT-WNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD---------TMASLLP 239
            MP +     W  +              D CRE  + ++   A          T    + 
Sbjct: 647 HMPFEPTTAMWLRI-------------FDCCREYGNRKLGERAAKCINDSNPLTPVQFVA 693

Query: 240 SVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
           +V   S +     +      + +        +   A+ S+PA      L +       + 
Sbjct: 694 TVDYESNDGGREAESTSFSSEGEGCEELPFSLEGEASGSLPAPLTTRPLAIWYGMARHHH 753

Query: 300 ISVASVLPACGDLSALLLG-------RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
               S L A   L+ LL         R  H    +        L N LV  YA+ G L +
Sbjct: 754 HHFVSHLRASAPLADLLRSAPNLPAARAAHARALKSPFVAETFLLNTLVSAYARLGRLPD 813

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF------------------------ 388
           AR VFD++   +  S+ +++SA+   G+  DA ALF                        
Sbjct: 814 ARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDPDQCSYNAVIAALAQHSRG 873

Query: 389 -------SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF-- 439
                  + M       ++ +F S LSAC+       G        + + LV +  H   
Sbjct: 874 ADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTG-------VQVHALVSKSPHAKD 926

Query: 440 ----ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
               + L+D+  +    EEA  + + MP E N   W SL+   C   N  +G
Sbjct: 927 VYIGSALLDMYAKCEWPEEARRVFEAMP-ERNIVSWNSLIT--CYEQNGPVG 975


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 191/515 (37%), Positives = 287/515 (55%), Gaps = 48/515 (9%)

Query: 37  ILDKYPDIKTLKKLHAQIIIN--QHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           +L     +  L ++HAQII++  +H HS   + + L   +  C      R VFD   N +
Sbjct: 58  LLSSCKHLNPLLQIHAQIIVSGFKHHHSITHL-INLYSLFHKCDL---ARSVFDSTPNPS 113

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
            + +N +IR+Y  +  Y +AL +Y                                  +C
Sbjct: 114 RILWNSMIRAYTRSKQYNEALEMY----------------------------------YC 139

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            V K GL+ ++F G GLV MY K G LK AR V + MP +DVV WN+M+AG +Q+    E
Sbjct: 140 MVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQS----E 195

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
              V R +    +  D  +  +++    +      + V E+F K+   N V+WNV+IA Y
Sbjct: 196 DPYVARRVFDQMVDQDDVSWGTMMAGYAHNGC--FVEVLELFDKMKLGN-VTWNVIIAAY 252

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
             N    EA+  + QM +    PN+++  SVLPA   L+A   G   H  + +     N 
Sbjct: 253 MQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNT 312

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + N+L+DMYAKCG L  +  +F++M  +D VSW +M+S Y + G G  A+ALFS M  S
Sbjct: 313 LVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQES 372

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
            +  DS++FVSVLSAC HAGL+EEGR  F  M+++Y + P +EH+AC+VDLLGRAG  +E
Sbjct: 373 QVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDE 432

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
               IK MP+EP+  +WG+L+ +C ++SN+ +G +A DH+  L P    ++V+LS+IYA+
Sbjct: 433 TLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQ 492

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           +GRW D  + R  MN  G+KK PG S VE+ ++V 
Sbjct: 493 SGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVH 527


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 202/559 (36%), Positives = 314/559 (56%), Gaps = 42/559 (7%)

Query: 26  YTLLSG-DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR 84
           YT++S   AC    D +   K  K++HA ++ +    S   +   L+  Y  CG+M    
Sbjct: 285 YTIVSALTAC----DGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAE 340

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
            +  ++ N +VV +N LI+ YV N +Y +AL  + +M   G   D  +   ++ A    +
Sbjct: 341 RILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLS 400

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
           +LL G+++H  V+K G D NL  GN L+ MY KC       R    M  KD+++W +++A
Sbjct: 401 NLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIA 460

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM--------- 255
           GYAQN    EAL++ R++   R++ D   + S+L +  ++  +++L VKE+         
Sbjct: 461 GYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRA--SSVLKSMLIVKEIHCHILRKGL 518

Query: 256 -------------------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
                                    F  +  K++VSW  MI+  A N   +EAV+L+ +M
Sbjct: 519 LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM 578

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
              G+  +++++  +L A   LSAL  GR+IH Y+ RK       +  A+VDMYA CG L
Sbjct: 579 VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL 638

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
             A+ VFD++  + ++ +TSMI+AYGM G G  AV LF KM    + PD I+F+++L AC
Sbjct: 639 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYAC 698

Query: 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI 470
           SHAGLL+EGR + KIM  +Y+L P  EH+ CLVD+LGRA  V EA++ +K M  EP   +
Sbjct: 699 SHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEV 758

Query: 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530
           W +L+AAC  +S  +IG +AA  +  L P   G  VL+SN++A+ GRW DV++VR  M +
Sbjct: 759 WCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKA 818

Query: 531 KGIKKMPGAS-VEMNDQVQ 548
            G++K PG S +EM+ +V 
Sbjct: 819 SGMEKHPGCSWIEMDGKVH 837



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/404 (29%), Positives = 202/404 (50%), Gaps = 45/404 (11%)

Query: 48  KKLHAQIIINQHLHSNPSIGL-----KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++LH++I       + PS  L     KL+  YG CG + D   VFDE+ ++    +N +I
Sbjct: 100 RQLHSRI-----FKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMI 154

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            +YV+N     AL +Y NM V G      ++P +LKAC+    +  G ++H  +VK+G  
Sbjct: 155 GAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYH 214

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCRE 221
              F  N LV+MY K   L  ARR+ +    K D V WNS+++ Y+ +G+  E L++ RE
Sbjct: 215 STGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFRE 274

Query: 222 MESLRIKPDADTM--------------------ASLLPSVTNTSPENVLS---------- 251
           M      P++ T+                    AS+L S T++S   V +          
Sbjct: 275 MHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCG 334

Query: 252 ----VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                + +  +++N ++V+WN +I  Y  N M  EA++ +  M   G + + +S+ S++ 
Sbjct: 335 KMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIA 394

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           A G LS LL G ++H YV +     NL++ N L+DMY+KC         F +M  +D++S
Sbjct: 395 ASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLIS 454

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
           WT++I+ Y  +    +A+ LF  +    +  D +   S+L A S
Sbjct: 455 WTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASS 498



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 16/231 (6%)

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           +++F ++ ++   +WN MI  Y +N  PA A+ LY  M V G+     S  ++L AC  L
Sbjct: 136 EKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKL 195

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSM 371
             +  G ++H  + +        + NALV MYAK   L+ AR +FD  + + D V W S+
Sbjct: 196 RDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSI 255

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           +S+Y  SG+  + + LF +M M+G  P+S   VS L+AC       +G  Y K+  E + 
Sbjct: 256 LSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTAC-------DGFSYAKLGKEIHA 308

Query: 432 LVPR-----IEHFAC--LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
            V +      E + C  L+ +  R GK+ +A  +++QM    +   W SL+
Sbjct: 309 SVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMN-NADVVTWNSLI 358



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 117/276 (42%), Gaps = 49/276 (17%)

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE---NALVDMYAKCGSLTEARTVF 357
           + A VL  CG   A+  GR++H  +   K  P+  L+     LV MY KCGSL +A  VF
Sbjct: 82  AFAYVLELCGKRRAVSQGRQLHSRI--FKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVF 139

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS------ 411
           D+M  +   +W +MI AY  +G+   A+AL+  M + G+     +F ++L AC+      
Sbjct: 140 DEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIR 199

Query: 412 -----HAGLLEEG------------------------RYYFKIMTEQYKLVPRIEHFACL 442
                H+ L++ G                        R  F    E+   V     +  +
Sbjct: 200 SGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVL----WNSI 255

Query: 443 VDLLGRAGKVEEAYDLIKQMPME---PNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
           +     +GK  E  +L ++M M    PN     S + AC  +S   +G      +   + 
Sbjct: 256 LSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSST 315

Query: 500 NQSGYYV--LLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           + S  YV   L  +Y + G+    +R+ + MN+  +
Sbjct: 316 HSSELYVCNALIAMYTRCGKMPQAERILRQMNNADV 351


>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
          Length = 545

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 188/508 (37%), Positives = 276/508 (54%), Gaps = 39/508 (7%)

Query: 34  CNDILDKYPDIKTLKKLHAQIIINQHLHSNP-SIGLKLMRTYGACGQMVDTRHVFDEITN 92
           C+ +L +   I+ L+++HAQ + +  LH N  SI  K+ R+Y   G+  D   +FDEI +
Sbjct: 23  CHHLLTQCKTIRELQRIHAQALTHG-LHPNQQSISCKIFRSYAEFGRPADAGRLFDEIPH 81

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
            +++ F  L+  ++    ++ A+ V+ +    G  PD +     L A  G     +G  +
Sbjct: 82  PDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVV 141

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  + + GLD  L   N LV MY +CG  + AR V + M  KD VTW SM+ GY +    
Sbjct: 142 HGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGV 201

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIA 272
           D AL                                       F ++  K+ VSW  +I 
Sbjct: 202 DSAL-------------------------------------SFFYQMPMKSTVSWTALIT 224

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            +  +  P +A++L+ +M + G  PN I++  VL AC D+ AL LGR IH Y  +     
Sbjct: 225 GHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATT 284

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           N+ + NAL+DMYAK GS+  A +VF++++ +D  +WT+MIS++ + G G  AV LF  ML
Sbjct: 285 NIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDML 344

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
            SG+ P+S+ FVSVLSACSHAGL++EGR  F  M E Y + PR+EH+ C+VDLLGR G +
Sbjct: 345 RSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLL 404

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
           EEA  LI  M +EP+  IW SL++AC  + N  +  +A   I    P   G YVLL N+Y
Sbjct: 405 EEAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAEIAGMEIIKREPGDDGVYVLLWNMY 464

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           A + RW +   +RK M S+ I K PG S
Sbjct: 465 ALSNRWKEALDMRKQMLSRKIYKKPGCS 492


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 189/534 (35%), Positives = 300/534 (56%), Gaps = 47/534 (8%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFF--NVLIRS 104
           +++LHAQ++    LH +P    KL+ +Y    ++  +R +F    N     F  N L+R+
Sbjct: 74  VQELHAQLL-KHGLHLDPLAASKLISSYALQRRLPASRRIFASFPNPQATTFLPNTLLRA 132

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
           Y  N L + A+ ++  M       D +TY  ++KA S S+ L     +H  VVK+G   +
Sbjct: 133 YALNALPHAAVSLFSAMPQR----DSFTYSFLIKALS-SSGLTPLRAVHSHVVKLGSIED 187

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
            + GN L+  Y K G   +A +V  +MP +D V+WNS +A   + G    A  +  EM  
Sbjct: 188 TYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEM-- 245

Query: 225 LRIKPDADTMA--SLLPSVTNTS------------PE-NVLS----------------VK 253
               PD DT++  ++L   T               PE NV+S                 +
Sbjct: 246 ----PDKDTVSWNTVLDGYTKAGKMEDAFELFQCMPERNVVSWSTVVSGYCKKGDIEMAR 301

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
            +F K+  KNLV+W +M++  A N +  EA  L+ QM+   +E +  +V S+L AC +  
Sbjct: 302 VIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESG 361

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD-QMRCQDVVSWTSMI 372
           +L LG++IHRYV  ++L  +  + NA++DM+ KCG +  A  VFD ++  +D VSW ++I
Sbjct: 362 SLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTII 421

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
             + M G G  A+  F++M + G  PD++  ++VLSAC+H G +EEGR +F  M   Y +
Sbjct: 422 GGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGI 481

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAAD 492
           VP+IEH+ C++DLLGR G +EEA  LIK MP +PNE IWGSL++AC L+ N++   +A +
Sbjct: 482 VPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVN 541

Query: 493 HIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMND 545
            +  L P+ +G Y +LSNIYA+AG+W D+ + R  M   G +K  G+S +E+++
Sbjct: 542 ELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKSAGSSWIELDE 595


>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
 gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
          Length = 547

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 176/482 (36%), Positives = 275/482 (57%), Gaps = 48/482 (9%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM--------SVHGFD-P 128
           G+      VF  +   N+   N +I++Y  N+L+ DA+ VY  M        S  GF   
Sbjct: 56  GRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVG 115

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D +TYP +LKAC G  +  +G Q+H  V + G + +    N L+ MY +CG L  AR+V 
Sbjct: 116 DRFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVF 175

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
           + M  KD V+WN++++ +A+ G+  +A                                 
Sbjct: 176 DGMREKDAVSWNTLISAHARMGQMRKA--------------------------------- 202

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
               +E+F  + +K +VSW  +++ Y      A AV+++ QM++ G EP+ +S+ +VLPA
Sbjct: 203 ----RELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPA 258

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  L AL LGR I+ Y  +  +   + + NAL++MYAKCG + EA  +F  M  +DV+SW
Sbjct: 259 CAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISW 318

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSG-LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           ++ I      G+  +AV LF  M   G + P+ I FV +LSACSHAGLL+EG  YF  M 
Sbjct: 319 STAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMK 378

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
           E+Y + P +EH+ C+VDLLGR+G+++ A D I  MP+ P+ +IWGSL++AC  +S++D  
Sbjct: 379 EEYGVEPSVEHYGCVVDLLGRSGRIQRALDTIGGMPIPPDGKIWGSLLSACRSHSDVDTA 438

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
           ++AA+ +  L P   G  V+L+N+YA AGRWG+V   RK + S+  +K PG S +E+++ 
Sbjct: 439 VVAAERLVELEPEDVGNLVMLANVYAAAGRWGNVASTRKEIRSRSTRKTPGCSMIEVDNV 498

Query: 547 VQ 548
           V+
Sbjct: 499 VR 500


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 182/535 (34%), Positives = 295/535 (55%), Gaps = 35/535 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LH+  +I   + S+  I   L+  Y  C  +      F     +NVV +NV++ +Y  
Sbjct: 334 KQLHS-YVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQ 392

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                ++  ++  M + G  P+ YTYP +L+ C+   +L +G QIH  V+K G  +N++ 
Sbjct: 393 LGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYV 452

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            + L+ MY K G L  AR +L  +  +DVV+W +M+AGY Q+  F EAL + +EME+  I
Sbjct: 453 CSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGI 512

Query: 228 KPDADTMASLLPSVTNTSPENV----------------LSVKEM---------------- 255
           + D    +S + +       N                 LS+                   
Sbjct: 513 RSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYL 572

Query: 256 -FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
            F K+D K+ +SWN +I+ +A +    EA+ ++ QM   G+E N  +  S + A  + + 
Sbjct: 573 AFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTAN 632

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           +  G++IH  + +          N L+ +Y+KCGS+ +A+  F +M  ++VVSW +MI+ 
Sbjct: 633 IKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITG 692

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
           Y   G G +AV+LF +M   GL P+ + FV VLSACSH GL+ EG  YF+ M++++ LVP
Sbjct: 693 YSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVP 752

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
           + EH+ C+VDLLGRA  +  A + I++MP+EP+  IW +L++AC ++ N++IG  AA H+
Sbjct: 753 KPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHL 812

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
             L P  S  YVLLSN+YA +G+W    R R+ M  +G+KK PG S +E+ + + 
Sbjct: 813 LELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIH 867



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 239/490 (48%), Gaps = 45/490 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           KKLHA+I           +G +L+  Y A G++ +   +FD+I + NV F+N +I   + 
Sbjct: 30  KKLHARIF-KSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLA 88

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS-LLVGLQIHCSVVKVGLDYNLF 166
             L    L ++  M      PD  T+  VL+ACSG  +   V  QIH  ++  G   +  
Sbjct: 89  KKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPL 148

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
             N L+ +Y K G +  A+ V   +  KD V+W +M++G +QNGR DEA+ +  +M    
Sbjct: 149 VCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSA 208

Query: 227 IKPDADTMASLLPSVTNT------------------SPE---------------NVLSVK 253
           + P     +S+L + T                    S E               N+++ +
Sbjct: 209 VIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAE 268

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           ++F K+  ++ +S+N +I+  A       A+ L+ +M++  ++P+ ++VAS+L AC  + 
Sbjct: 269 QIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVG 328

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           A   G+++H YV +  +  +L +E +L+D+Y KC  +  A   F     ++VV W  M+ 
Sbjct: 329 AGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLV 388

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
           AYG  G   ++  +F +M + GL P+   + S+L  C+  G L+ G    +I T+  K  
Sbjct: 389 AYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGE---QIHTQVIKSG 445

Query: 434 PRIEHFAC--LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
            +   + C  L+D+  + G+++ A  +++++  E +   W +++A    Y+  D+    A
Sbjct: 446 FQFNVYVCSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMIAG---YTQHDL-FAEA 500

Query: 492 DHIFHLAPNQ 501
             +F    NQ
Sbjct: 501 LKLFQEMENQ 510



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 128/510 (25%), Positives = 232/510 (45%), Gaps = 47/510 (9%)

Query: 2   KAVVLLCRHFSTTKPVQALVLSTQYTLLSG-DACNDILDKYPDIKTLKKLHAQIIINQHL 60
           +A++L C+   +       V+ T Y   S   AC  I       K  ++LH   I+   L
Sbjct: 196 EAILLFCQMHKSA------VIPTPYVFSSVLSACTKI----ELFKLGEQLHG-FIVKWGL 244

Query: 61  HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKN 120
            S   +   L+  Y   G ++    +F ++  ++ + +N LI           AL +++ 
Sbjct: 245 SSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEK 304

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M +    PDC T   +L AC+   +   G Q+H  V+K+G+  +L     L+ +Y KC  
Sbjct: 305 MQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFD 364

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           ++ A        +++VV WN M+  Y Q G   E+  +  +M+   + P+  T  S+L +
Sbjct: 365 IETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRT 424

Query: 241 VT----------------------NTSPENVL-----------SVKEMFLKLDNKNLVSW 267
            T                      N    +VL           + + +  +L  +++VSW
Sbjct: 425 CTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSW 484

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
             MIA Y  + + AEA+ L+ +ME  GI  + I  +S + AC  + AL  G++IH     
Sbjct: 485 TAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYI 544

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
                +L + NALV +YA+CG   +A   F+++  +D +SW ++IS +  SG   +A+ +
Sbjct: 545 SGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQV 604

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           FS+M  +G+  +   F S +SA ++   +++G+    +M +        E    L+ L  
Sbjct: 605 FSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKT-GYDSETEASNVLITLYS 663

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           + G +E+A     +MP E N   W +++  
Sbjct: 664 KCGSIEDAKREFFEMP-EKNVVSWNAMITG 692



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 126/483 (26%), Positives = 209/483 (43%), Gaps = 82/483 (16%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M   G   +  TY  + + C  S SLL   ++H  + K G D     G+ L+ +Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           +  A ++ +D+PS +V  WN +++G        + L +   M +  + PD  T AS+L +
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 241 VTN---------------------TSP-------------ENVLSVKEMFLKLDNKNLVS 266
            +                      +SP              +V   K +F +L  K+ VS
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS 180

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           W  MI+  + N    EA+ L+ QM    + P     +SVL AC  +    LG ++H ++ 
Sbjct: 181 WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIV 240

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           +  L     + NALV +Y++ G+L  A  +F +M  +D +S+ S+IS     G    A+ 
Sbjct: 241 KWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQ 300

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAG--------------------LLEEGRYY---- 422
           LF KM +  + PD +   S+LSAC+  G                    L+ EG       
Sbjct: 301 LFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYV 360

Query: 423 --FKIMT-EQYKLVPRIEHFACLVDLL---GRAGKVEEAYDLIKQMPME---PNERIWGS 473
             F I T  +Y L    E+      +L   G+ G + E+Y +  QM +E   PN+  + S
Sbjct: 361 KCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPS 420

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGY----YV--LLSNIYAKAGRW----GDVKR 523
           ++  C     +D+G        H    +SG+    YV  +L ++YAK G      G ++R
Sbjct: 421 ILRTCTSLGALDLG-----EQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQR 475

Query: 524 VRK 526
           +R+
Sbjct: 476 LRE 478


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 192/535 (35%), Positives = 292/535 (54%), Gaps = 37/535 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+ T + +HAQ+   + L S       L   Y  C +  D R VFD + +++ V +N ++
Sbjct: 31  DLATGRAVHAQLEA-RGLASESIASTALANMYFKCRRPADARRVFDRMPSRDRVAWNAVV 89

Query: 103 RSYVNNYLYYDALHVYKNMSVH--GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
             Y  N L   A+     M     G  PD  T   VL AC+ + +L    ++H   ++ G
Sbjct: 90  AGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACREVHAFALRAG 149

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
           LD  +     ++  Y KCG ++ AR V + MP ++ V+WN+M+ GYA NG   EA+ +  
Sbjct: 150 LDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFW 209

Query: 221 EMESLRIK-PDADTMASL--------LPSV-------------TNTSPENVLSVK----- 253
            M    +   DA  +A+L        L  V             +N S  N L        
Sbjct: 210 RMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCK 269

Query: 254 ------EMFLKLDNKNL-VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
                 ++F +L NK   +SWN MI  +  N  P +A  L+ +M++  + P++ ++ SV+
Sbjct: 270 RADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVI 329

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
           PA  D+S  L  R IH Y  R +L  ++ +  AL+DMY+KCG ++ AR +FD  R + V+
Sbjct: 330 PAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVI 389

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           +W +MI  YG  G G  AV LF +M  +G  P+   F+SVL+ACSHAGL++EG+ YF  M
Sbjct: 390 TWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASM 449

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
            + Y L P +EH+  +VDLLGRAGK++EA+  IK MP+EP   ++G+++ AC L+ N+++
Sbjct: 450 KKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVEL 509

Query: 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
              +A  IF L P +  Y+VLL+NIYA A  W DV RVR  M  KG++K PG S+
Sbjct: 510 AEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSI 564



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 209/487 (42%), Gaps = 80/487 (16%)

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           P   T+  +LK C+    L  G  +H  +   GL         L  MY KC    +ARRV
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM--ESLRIKPDADTMASLLPSVTNTS 245
            + MPS+D V WN++VAGYA+NG    A++    M  E    +PD+ T+ S+LP+  +  
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADAR 133

Query: 246 PEN---------------------------------VLSVKEMFLKLDNKNLVSWNVMIA 272
             +                                 V + + +F  +  +N VSWN MI 
Sbjct: 134 ALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMID 193

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            YA+N    EA+ L+ +M   G++    SV + L ACG+L  L   R++H  + R  L  
Sbjct: 194 GYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSS 253

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDV-VSWTSMISAYGMSGQGYDAVALFSKM 391
           N+ + NAL+  YAKC     A  VF+++  +   +SW +MI  +  +    DA  LF++M
Sbjct: 254 NVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARM 313

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
            +  + PDS   VSV+ A +      + R+     + +++L   +     L+D+  + G+
Sbjct: 314 QLENVRPDSFTLVSVIPAVADISDPLQARWIHG-YSIRHQLDQDVYVLTALIDMYSKCGR 372

Query: 452 V-------------------------------EEAYDLIKQMPME---PNERIWGSLVAA 477
           V                               + A +L ++M      PNE  + S++AA
Sbjct: 373 VSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAA 432

Query: 478 CCLYSNMDIG---ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534
           C     +D G     +    + L P    Y  ++  +    GR G +     F+ +  I+
Sbjct: 433 CSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLL----GRAGKLDEAWSFIKNMPIE 488

Query: 535 KMPGASV 541
             PG SV
Sbjct: 489 --PGISV 493


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 190/576 (32%), Positives = 315/576 (54%), Gaps = 73/576 (12%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD----TRHVFDEITNKNVVFFN 99
           +++L+ +HAQ+I    LH N +  L  +  +       D       VF+ I   N++ +N
Sbjct: 3   LQSLRMIHAQMI-KTGLH-NTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWN 60

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            + R +  +     AL +Y  M   G  P+ YT+P +LK+C+ S +   G QIH  V+K+
Sbjct: 61  TMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKL 120

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLND----------------------------- 190
           G D +L+    L++MY + G L++A +V ++                             
Sbjct: 121 GCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMF 180

Query: 191 --MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV------- 241
             +P KDVV+WN+M++GYA+ G + EAL++ ++M    ++PD  TM +++ +        
Sbjct: 181 DEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE 240

Query: 242 ---------------TNTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYA 275
                          +N    N L           +   +F  L  K+++SWN +I  Y 
Sbjct: 241 LGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYT 300

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER--KKLQPN 333
           + ++  EA+ L+ +M   G  PN +++ S+LPAC  L A+ +GR IH Y+++  K +   
Sbjct: 301 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANA 360

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             L  +L+DMYAKCG +  A  VF+ +  + + SW +MI  + M G+   +  +FS+M  
Sbjct: 361 SSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRK 420

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           +G+ PD I FV +LSACSH+G+L+ GR+ F+ MT+ YK+ P++EH+ C++DLLG +G  +
Sbjct: 421 NGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFK 480

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA ++I  M MEP+  IW SL+ AC ++ N+++G   A ++  + P   G YVLLSNIYA
Sbjct: 481 EAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYA 540

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
            AGRW +V   R  +N KG+KK+PG +S+E++  V 
Sbjct: 541 TAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVH 576


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 183/473 (38%), Positives = 272/473 (57%), Gaps = 38/473 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G + + R VFDE ++K+VV +  +I  Y  +    +A+ V++ M +   +P+
Sbjct: 298 LIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPN 357

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   V+ ACS   +L +G ++H  V +  +  +L   N L+ MY KC CL +AR + +
Sbjct: 358 EVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFD 417

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            M +KDV +W SMV GYA+          C ++ES R                       
Sbjct: 418 RMATKDVYSWTSMVNGYAK----------CGDLESAR----------------------- 444

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                 F +   KN V W+ MIA Y+ N+ P E++ L+ +M   G+ P   ++ SVL AC
Sbjct: 445 ----RFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSAC 500

Query: 310 GDLSALLLGRKIHRYVERKKLQP-NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           G L+ L LG  IH+Y    K+ P ++ LENA+VDMYAKCGS+  A  VF  M  ++++SW
Sbjct: 501 GQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISW 560

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            +MI+ Y  +G+   A+ +F +M   G  P++I FVS+L+ACSH GL+ EGR YF  M  
Sbjct: 561 NTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMER 620

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
           +Y + P   H+AC+VDLLGR G +EEAY LI  MPM+P E  WG+L+ AC ++ N+++  
Sbjct: 621 KYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELAR 680

Query: 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           L+A ++  L P  SG YVLL+N  A   +W DV+RVR  M  KG+KK+PG S+
Sbjct: 681 LSAHNLLRLDPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSL 733



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 2/221 (0%)

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F +++  N   WN MI  Y N   P  A   ++ M    +E ++ S    L AC     
Sbjct: 213 IFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFET 272

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           +  G  ++  V +      L + N L+  YA+ G L  AR VFD+   +DVV+WT+MI  
Sbjct: 273 VFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDG 332

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
           Y       +A+ +F  ML+S + P+ +  ++V+SACS  G LE G+   + + E+     
Sbjct: 333 YAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCS 392

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
              H A L+D+  +   + +A +L  +M  + +   W S+V
Sbjct: 393 LSLHNA-LLDMYVKCDCLVDARELFDRMATK-DVYSWTSMV 431



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 90/194 (46%), Gaps = 4/194 (2%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           +H   ++ + +  + ++   ++  Y  CG +     VF  +  +N++ +N +I  Y  N 
Sbjct: 512 IHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANG 571

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV-KVGLDYNLFNG 168
               A++V+  M   GF+P+  T+  +L ACS    +  G +   ++  K G+     + 
Sbjct: 572 RAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHY 631

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDV-VTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
             +V + G+ G L+EA +++ +MP +     W +++     +G  + A      +  LR+
Sbjct: 632 ACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNL--LRL 689

Query: 228 KPDADTMASLLPSV 241
            P+   +  LL + 
Sbjct: 690 DPEDSGIYVLLANT 703


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 181/531 (34%), Positives = 300/531 (56%), Gaps = 36/531 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +K+H QI+   +  S    GL  M  Y  CG++  +R VFDE  ++NV  ++ +I  YV 
Sbjct: 123 RKVHCQIVKFGNPDSFVFTGLVDM--YAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQ 180

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N L  D L ++  M     + +  T   ++ AC    +L  G  +H  ++K G++   + 
Sbjct: 181 NNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYL 240

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L+ +Y KCG +++AR V +++   D+V+W +M+ GY QNG  +EAL +  + E + +
Sbjct: 241 VTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAV 300

Query: 228 KPDADTMASLLPSVTNTSPENV------LSVK--------------------------EM 255
            P+  T+AS+  S +     N+      LS+K                           +
Sbjct: 301 LPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLGSRDPIVTNSLVDFYAKCQMNRDARYV 360

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F  + ++++V+WN +I+ ++ N    EA++L+ QM +  + P+A+++ SVL AC  L+AL
Sbjct: 361 FETISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNAL 420

Query: 316 LLGRKIHRY-VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
            +G   H Y V+R  L  N+ +  AL+  YAKCG    AR +FD M  +  V+W++MIS 
Sbjct: 421 QVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQKSTVTWSAMISG 480

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
           YG+ G G  ++++F  ML + L P+   F S+LSACSH G++ EG   F ++ + Y LVP
Sbjct: 481 YGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSACSHTGMIGEGWRLFTMICQDYNLVP 540

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
             +H+ C+VDLL RAG+++EA D I++MP++P+  ++G+ +  C L+S  D+G LA   +
Sbjct: 541 STKHYTCMVDLLARAGRLKEALDFIQKMPVQPDVSLFGAFLHGCGLHSRFDLGELAIKRM 600

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV-EMN 544
             L P  + YYVL+ N+YA   RW  VK+VR+ M  +G+ K PG S+ EM+
Sbjct: 601 LELHPGDACYYVLMCNLYASDARWSKVKQVRELMKQRGLMKTPGCSLMEMD 651



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 164/565 (29%), Positives = 266/565 (47%), Gaps = 82/565 (14%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           +I TL ++HA +++ Q L  + S   KL+  YG+ G++   R VFD I + + + + V+I
Sbjct: 17  NINTLMEMHAYLVV-QGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVII 75

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
           R Y  N  + D +  Y  M V   + D   +  VLKACS S +   G ++HC +VK G +
Sbjct: 76  RWYFLNSEFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFG-N 134

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            + F   GLV MY KCG ++ +R V ++   ++V +W+SM+AGY QN    + L +   M
Sbjct: 135 PDSFVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRM 194

Query: 223 ESLRIKPDADTMASLLPSVTNTSPEN---------------------------------V 249
               I+ +  T+  L+ +       +                                 V
Sbjct: 195 REELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVV 254

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
              + +F +L   ++VSW  MI  Y  N  P EA+ L+LQ E   + PN +++ASV  +C
Sbjct: 255 RDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSC 314

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L  L LGR IH  +  K    +  + N+LVD YAKC    +AR VF+ +  +DVV+W 
Sbjct: 315 SQLLNLNLGRSIHG-LSIKLGSRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWN 373

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           S+ISA+  +G  Y+A+ LF +M M  + PD++  VSVLSAC+    L+ G  +     ++
Sbjct: 374 SIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKR 433

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEA---YDLIKQ------------------------- 461
             L   +     L+    + G  E A   +D + Q                         
Sbjct: 434 GLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLSI 493

Query: 462 ------MPMEPNERIWGSLVAACCLYSNMDIGILAADHI---FHLAPNQSGYYVLLSNIY 512
                   ++PNE I+ S+++AC     +  G      I   ++L P+ + +Y  + ++ 
Sbjct: 494 FGDMLKAELKPNEEIFTSILSACSHTGMIGEGWRLFTMICQDYNLVPS-TKHYTCMVDLL 552

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMP 537
           A+AGR   +K    F     I+KMP
Sbjct: 553 ARAGR---LKEALDF-----IQKMP 569


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 187/541 (34%), Positives = 295/541 (54%), Gaps = 44/541 (8%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK--------NV 95
           + TLK +H+ +     L   P    +L+  Y   G +   R +FD   +         N 
Sbjct: 38  LTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNS 97

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
              N ++R+Y N    Y+A+ +Y  M   G   + +TYP VLK C+     + G  +H  
Sbjct: 98  FLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQ 157

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           VV+ G   +LF    LV MY KCG + +A  V + M  +DVV W +M+  Y Q  R  +A
Sbjct: 158 VVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKA 217

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPE---------------------------- 247
           L + R+M+      D  T  S+  +V                                  
Sbjct: 218 LMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGM 277

Query: 248 -----NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
                NV   + +F +++ +N +SWN M++ Y  N  P +A+ L+ QM+    +PN ++ 
Sbjct: 278 YAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTA 337

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD--QM 360
             ++ AC  L +  LGRK+H +V   K+  +  L NA++DMY KCG L  A  +F+  ++
Sbjct: 338 LIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCEL 397

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             +DV SW  +IS YG+ G G +A+ LFS+M + G+ P+ I F S+LSACSHAGL++EGR
Sbjct: 398 GERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGR 457

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
             F  MT +  + P ++H+AC+VD+LGRAG + EA+ LIK++P  P++ +WG+L+ AC +
Sbjct: 458 KCFADMT-KLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRI 516

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           + N ++G +AA+++F L P  +GYYVL+SNIYA + +W +V+ VR+ M S+G+KK    S
Sbjct: 517 HGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFS 576

Query: 541 V 541
           V
Sbjct: 577 V 577


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 176/480 (36%), Positives = 284/480 (59%), Gaps = 3/480 (0%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y   G + D R VFD+++  + V +N +I  +  N     AL  +  M   GF+  
Sbjct: 95  MLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFEST 154

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            YT+  VL ACS    +  G QIH  +V   L  ++F  N L  MY KCG L +AR + +
Sbjct: 155 DYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFD 214

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            M +K+VV+WNSM++GY QNG+ +    +  EM+S  + PD  T++++L +        +
Sbjct: 215 RMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGY--I 272

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
               + F ++  K+ V W  M+   A N    +A+ L+ +M +  + P+  +++SV+ +C
Sbjct: 273 DEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSC 332

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L++L  G+ +H       +  +L + +ALVDMY+KCG   +A  VF +M  ++V+SW 
Sbjct: 333 ARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWN 392

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           SMI  Y  +G+  +A+AL+ +ML   L PD+I FV VLSAC HAGL+E G+ YF  +++ 
Sbjct: 393 SMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKI 452

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           + + P  +H++C+++LLGRAG +++A DLIK M  EPN  IW +L++ C +  +++ G +
Sbjct: 453 HGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEM 512

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           AA H+F L P+ +G Y++LSNIYA  GRW DV  VR  M +  IKK    S +E+++QV 
Sbjct: 513 AARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVH 572



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 198/415 (47%), Gaps = 63/415 (15%)

Query: 132 TYPCVLKACSGSNSLLVG--LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
           +Y  +L  C  SN ++    LQ H  +  +    + F  N L+ +Y K G L +AR + +
Sbjct: 24  SYTRLLLQCVRSNDVVQAKRLQTHMDL-HLYQPTDTFLQNRLLHLYAKSGNLSDARDLFD 82

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            M  +DV +WN+M++ Y+++G                                     NV
Sbjct: 83  KMSRRDVFSWNAMLSAYSKSG-------------------------------------NV 105

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
             ++ +F ++   + VS+N +IA ++ N   ++A++ +++M+  G E    +  SVL AC
Sbjct: 106 EDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHAC 165

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L  +  G++IH  +    L  ++ + NAL +MYAKCG+L +AR +FD+M  ++VVSW 
Sbjct: 166 SQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWN 225

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           SMIS Y  +GQ      LF +M  SGL PD +   ++LSA    G ++E    F+ + E+
Sbjct: 226 SMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEK 285

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME---PNERIWGSLVAACCLYSNMDI 486
            K+        C      + GK E+A  L ++M +E   P+     S+V++C   +++  
Sbjct: 286 DKVCWTTMMVGC-----AQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQ 340

Query: 487 G--------ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           G        I   DH   ++         L ++Y+K G   D   V K M ++ +
Sbjct: 341 GQAVHGKAVIFGVDHDLLVSS-------ALVDMYSKCGETADAWIVFKRMLTRNV 388



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 76/133 (57%), Gaps = 5/133 (3%)

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQP-NLRLENALVDMYAKCGSLTEARTV 356
           N+ S   +L  C   + ++  +++  +++    QP +  L+N L+ +YAK G+L++AR +
Sbjct: 21  NSESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDL 80

Query: 357 FDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL 416
           FD+M  +DV SW +M+SAY  SG   D  A+F +M +     D++++ +V++  S  G  
Sbjct: 81  FDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVH----DAVSYNTVIAGFSGNGCS 136

Query: 417 EEGRYYFKIMTEQ 429
            +   +F  M E+
Sbjct: 137 SQALEFFVRMQEE 149



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 24/224 (10%)

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL------SALLLGRKIHRYV 325
           A+Y+  +  +E+   Y ++ +  +  N +  A  L    DL         L  R +H Y 
Sbjct: 13  ALYSRGTANSES---YTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYA 69

Query: 326 ERKKLQPNLRL-----------ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           +   L     L            NA++  Y+K G++ + R VFDQM   D VS+ ++I+ 
Sbjct: 70  KSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAG 129

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY-YFKIMTEQYKLV 433
           +  +G    A+  F +M   G        VSVL ACS    ++ G+  + +I+     L 
Sbjct: 130 FSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATS--LG 187

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             +  +  L ++  + G +++A  L  +M +  N   W S+++ 
Sbjct: 188 ESVFVWNALTNMYAKCGALDQARWLFDRM-VNKNVVSWNSMISG 230


>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
 gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
          Length = 508

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 172/471 (36%), Positives = 277/471 (58%), Gaps = 45/471 (9%)

Query: 86  VFDEITNK-NVVFFNVLIRSYVNNYLYYDA-LHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
           +F  IT+  ++  +N +I++  ++  +  A + +Y N+ + G  PD Y++P  LKA +  
Sbjct: 32  LFTSITHAPDIYLYNNIIKALSSSPTHPKASIFLYNNIQLAGLRPDSYSFPFALKAVTRF 91

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK--CGCLKEARRVLN--DMPSKDVVTW 199
           +S+  G Q+H   ++ GL  +L      V MY     GC+ +AR++ +   M + DV  W
Sbjct: 92  SSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGSGCICDARKMFDGMSMSTGDVALW 151

Query: 200 NSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKL 259
           N+M+ GYA++G      D+C                               + +++F ++
Sbjct: 152 NAMLNGYAKHG------DLC-------------------------------NARDLFERM 174

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
             +N++SW  +I  YA  + P +A+ L+ +M++  +EP+ I++   L AC  L AL LG 
Sbjct: 175 PQRNVISWTALITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELGE 234

Query: 320 KIHRYVERKKL-QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
            I  Y++R  L   N+ L NAL+DMYAK G +  A  VF+ M  + +++WT+MI+   + 
Sbjct: 235 WIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALH 294

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           G G +A+ +FS+M  + + P+ I F+++LSACSH GL++ GR+YF  M  +Y + P+IEH
Sbjct: 295 GLGTEALEMFSRMERARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEH 354

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
           + C++DLLGRAG ++EA  L+ QMP EPN  IWGSL+AAC  + + ++G LA  H+  L 
Sbjct: 355 YGCMIDLLGRAGHLKEAQTLLAQMPFEPNAVIWGSLLAACNTHGDPELGELALQHLLELE 414

Query: 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           P+ SG Y LLSNIYA  GRW + + VRK M   G+KKMPG S +E+N++V 
Sbjct: 415 PDNSGNYALLSNIYASRGRWNESRVVRKVMWDAGVKKMPGGSLIEVNNRVH 465



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 143/294 (48%), Gaps = 14/294 (4%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y   G + + R +F+ +  +NV+ +  LI  Y      +DA+ +++ M +   +PD
Sbjct: 154 MLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQLENVEPD 213

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL-DYNLFNGNGLVAMYGKCGCLKEARRVL 188
                  L AC+   +L +G  I   + ++GL   N+   N L+ MY K G +K A +V 
Sbjct: 214 EIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVF 273

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
            +M  K ++TW +M+AG A +G   EAL++   ME  R+KP+  T  ++L + ++     
Sbjct: 274 ENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAILSACSHVGL-- 331

Query: 249 VLSVKEMFLKLDNK-----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
           V + +  F ++ ++      +  +  MI +        EA  L  QM     EPNA+   
Sbjct: 332 VQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMP---FEPNAVIWG 388

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV-DMYAKCGSLTEARTV 356
           S+L AC       LG    +++   +L+P+     AL+ ++YA  G   E+R V
Sbjct: 389 SLLAACNTHGDPELGELALQHL--LELEPDNSGNYALLSNIYASRGRWNESRVV 440


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 192/568 (33%), Positives = 309/568 (54%), Gaps = 71/568 (12%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH---VFDEIT 91
           + +LD+   +K LK +HAQII    LH   +  + L +    C Q  D R+   +FD+I 
Sbjct: 43  HHLLDQCSSMKRLKLVHAQII----LHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQIP 98

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
             N   +N LIR Y N+     +L +++ M   G  P+ +T+P VLKAC+        + 
Sbjct: 99  QPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVI 158

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H   +K+G+  +    N ++  Y  C  +  AR+V +D+  + +V+WNSM+AGY++ G 
Sbjct: 159 VHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGF 218

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPS------------------VTNTSPENVLS-- 251
            DEA+ + +EM  L ++ D  T+ SLL +                  +T    +++++  
Sbjct: 219 CDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNA 278

Query: 252 -------------VKEMFLKLDNKNLVSWNVMIAVYAN-----------NSMP------- 280
                         K +F ++ +K++VSW  M+  YAN           N MP       
Sbjct: 279 LIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSW 338

Query: 281 -------------AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
                         EAV+L+ +M + G+ P+  ++ S+L  C +   L LG++ H Y+  
Sbjct: 339 NSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICD 398

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
             +  ++ L N+L+DMYAKCG+L  A  +F  M  ++VVSW  +I A  + G G +A+ +
Sbjct: 399 NIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEM 458

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           F  M  SGL PD I F  +LSACSH+GL++ GRYYF IM   +++ P +EH+AC+VDLLG
Sbjct: 459 FKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLG 518

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507
           R G + EA  LI++MP++P+  +WG+L+ AC +Y N++I       +  L    SG YVL
Sbjct: 519 RGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVL 578

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKK 535
           LSN+Y+++ RW D+K++RK M+  GIKK
Sbjct: 579 LSNMYSESQRWDDMKKIRKIMDDSGIKK 606


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 185/541 (34%), Positives = 307/541 (56%), Gaps = 36/541 (6%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++  K++H   ++     S  ++   L+  Y  CG++   R +FDE+++++VV +N +I 
Sbjct: 174 VRECKRVHG-YVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMIS 232

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
               N    + L  +  M   G D D  T   VL AC+   +L +G  +H   VK G   
Sbjct: 233 GCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSG 292

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
            +   N L+ MY KCG L  A  V   M    +V+W S++A + + G   EA+ +  EM+
Sbjct: 293 GVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQ 352

Query: 224 SLRIKPDADTMASLLPSV----------------------TNTSPENVL--------SVK 253
           S  ++PD   + S++ +                       +N    N L        S++
Sbjct: 353 SKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSME 412

Query: 254 E---MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
           E   +F +L  KN+VSWN MI  Y+ NS+P EA+ L+L M+   ++P+ +++A VLPAC 
Sbjct: 413 EANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACA 471

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
            L+AL  GR+IH ++ RK    +L +  ALVDMY KCG L  A+ +FD +  +D++ WT 
Sbjct: 472 GLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTV 531

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           MI+ YGM G G +A++ F KM ++G+ P+  +F S+L AC+H+GLL+EG   F  M  + 
Sbjct: 532 MIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSEC 591

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            + P++EH+AC+VDLL R+G +  AY  I+ MP++P+  IWG+L++ C ++ ++++    
Sbjct: 592 NIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKV 651

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQI 549
           A+HIF L P  + YYVLL+N+YA+A +W +VK++++ ++  G+K   G S +E+  +  I
Sbjct: 652 AEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQGKFNI 711

Query: 550 I 550
            
Sbjct: 712 F 712



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 146/531 (27%), Positives = 264/531 (49%), Gaps = 50/531 (9%)

Query: 20  LVLSTQYTLLSGDACNDILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLKLMRTYGA 76
           L+  +Q + L  +    +L    ++K+L   K++H+ II +  +  +  +G KL+  Y  
Sbjct: 46  LLSRSQRSELELNTYCSVLQLCAELKSLEDGKRVHS-IISSNGMAIDEVLGAKLVFMYVN 104

Query: 77  CGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCV 136
           CG +V  R +FD I N  +  +N+L+  Y     Y +++ +++ M   G   D YT+ CV
Sbjct: 105 CGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCV 164

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG--NGLVAMYGKCGCLKEARRVLNDMPSK 194
           LK  + S  +    ++H  V+K+G  +  +N   N L+A Y KCG ++ AR + +++  +
Sbjct: 165 LKGFAASAKVRECKRVHGYVLKLG--FGSYNAVVNSLIAAYFKCGEVESARILFDELSDR 222

Query: 195 DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN----------- 243
           DVV+WNSM++G   NG     L+   +M +L +  D+ T+ ++L +  N           
Sbjct: 223 DVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALH 282

Query: 244 ----------------------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
                                 +   N+    E+F+K+    +VSW  +IA +    +  
Sbjct: 283 AYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHY 342

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
           EA+ L+ +M+  G+ P+  +V SV+ AC   ++L  GR++H ++++  +  NL + NAL+
Sbjct: 343 EAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALM 402

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           +MYAKCGS+ EA  +F Q+  +++VSW +MI  Y  +    +A+ LF  M    L PD +
Sbjct: 403 NMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDM-QKQLKPDDV 461

Query: 402 AFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFAC-LVDLLGRAGKVEEAYDLI 459
               VL AC+    LE+GR  +  I+ + Y       H AC LVD+  + G +  A  L 
Sbjct: 462 TMACVLPACAGLAALEKGREIHGHILRKGY---FSDLHVACALVDMYVKCGLLVLAQQLF 518

Query: 460 KQMPMEPNERIWGSLVAACCL--YSNMDIGILAADHIFHLAPNQSGYYVLL 508
             +P + +  +W  ++A   +  +    I       +  + P +S +  +L
Sbjct: 519 DMIP-KKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSIL 568



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 160/333 (48%), Gaps = 27/333 (8%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC++ LDK       +++H  I  N ++ SN  +   LM  Y  CG M +   +F ++  
Sbjct: 371 ACSNSLDKG------REVHNHIKKN-NMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPV 423

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           KN+V +N +I  Y  N L  +AL ++ +M      PD  T  CVL AC+G  +L  G +I
Sbjct: 424 KNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAALEKGREI 482

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  +++ G   +L     LV MY KCG L  A+++ + +P KD++ W  M+AGY  +G  
Sbjct: 483 HGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFG 542

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN--------KNL 264
            EA+    +M    I+P+  +  S+L + T++       +KE +   D+          L
Sbjct: 543 KEAISTFEKMRVAGIEPEESSFTSILYACTHSGL-----LKEGWKLFDSMKSECNIEPKL 597

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
             +  M+ +   +   + A   Y  +E   I+P+A    ++L  C     + L  K+  +
Sbjct: 598 EHYACMVDLLIRSGNLSRA---YKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEH 654

Query: 325 VERKKLQP-NLRLENALVDMYAKCGSLTEARTV 356
           +   +L+P N R    L ++YA+     E + +
Sbjct: 655 I--FELEPENTRYYVLLANVYAEAEKWEEVKKI 685


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 188/528 (35%), Positives = 299/528 (56%), Gaps = 35/528 (6%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           ++ + L  +  +G  L+  Y  C +      +FDE+ +K+V  +N +I  Y  +  + +A
Sbjct: 132 LVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEA 191

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
           L  +  M   GF+PD  T    + +C+    L  G +IH  +V  G   + F    LV M
Sbjct: 192 LRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDM 251

Query: 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
           YGKCG L+ A  V   MP+K VV WNSM+ GY   G     + + + M S  +KP   T+
Sbjct: 252 YGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTL 311

Query: 235 ASLLPSVTNTS------------------PE---------------NVLSVKEMFLKLDN 261
            S L + + ++                  P+                V S + +F  +  
Sbjct: 312 TSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPK 371

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
              VSWNVMI+ Y       +A+ L+ +M    +EP+AI+  SVL AC  L+AL  GR+I
Sbjct: 372 TTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREI 431

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
           H  +  + L  N  +  AL+DMYAKCG++ EA  VF  +  +D+VSWTSMI+AYG  G+ 
Sbjct: 432 HNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRV 491

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
           Y+A+ LF++ML S + PD + F+++LSACSHAGL+++G Y+F  M   Y ++PRIEH++C
Sbjct: 492 YEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSC 551

Query: 442 LVDLLGRAGKVEEAYDLIKQMP-MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500
           L+ LLGRAG++ EAY++++  P +  + ++  +L +AC L+ N+D+G+  A+++    P+
Sbjct: 552 LITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLIDKDPD 611

Query: 501 QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
            S  Y++LSN+YA  G+W +V+ VR  M   G+KK PG S +E+N+++
Sbjct: 612 DSSTYIILSNMYASFGKWDEVRMVRSKMKDLGLKKNPGCSWIEINEKI 659



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 150/469 (31%), Positives = 240/469 (51%), Gaps = 38/469 (8%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFFNVLI 102
           +K  K LH Q ++   L ++  +   L+  Y +C      ++VFD I N   +   N L+
Sbjct: 19  LKQGKVLH-QKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPFEISLCNGLM 77

Query: 103 RSYVNNYLYYDALHVY-KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
             Y  N +Y +AL ++ K M      PD YTYP VLKAC G   +++G  IH  +VK GL
Sbjct: 78  AGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGL 137

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             ++  G+ LV MY KC   + A ++ ++MP KDV  WN++++ Y Q+G+F+EAL     
Sbjct: 138 MVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGM 197

Query: 222 MESLRIKPDADTMASLLPSV------------------TNTSPENVLSVK---------- 253
           M     +PD+ T+ + + S                   +    ++ +S            
Sbjct: 198 MRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQ 257

Query: 254 -----EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
                E+F ++ NK +V+WN MI  Y         + L+ +M   G++P   ++ S L A
Sbjct: 258 LEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMA 317

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C   + LL G+ +H Y+ R ++QP++ L ++L+D+Y KCG +  A T+F  M     VSW
Sbjct: 318 CSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSW 377

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
             MIS Y   G+ +DA+ LF +M  S + PD+I F SVL+ACS    LE+GR    ++ E
Sbjct: 378 NVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVE 437

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           +  L         L+D+  + G VEEA+ + K +P E +   W S++ A
Sbjct: 438 R-NLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLP-ERDLVSWTSMITA 484



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 141/332 (42%), Gaps = 37/332 (11%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +H  II N+ +  +  +   LM  Y  CG++     +F  +     V +NV+I  YV 
Sbjct: 328 KFVHGYIIRNR-IQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVT 386

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
               +DAL ++  MS    +PD  T+  VL ACS   +L  G +IH  +V+  L  N   
Sbjct: 387 EGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVV 446

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L+ MY KCG ++EA  V   +P +D+V+W SM+  Y  +GR  EAL++  EM    +
Sbjct: 447 MGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNV 506

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
           KPD  T  ++L + ++               L +  L  +N MI VY           L 
Sbjct: 507 KPDRVTFLAILSACSHAG-------------LVDDGLYHFNQMINVYGIIPRIEHYSCLI 553

Query: 288 LQMEVHGIEPNAISVASVLPACGD----LSALLLGRKIHRYVERKKLQPNLRLENALVD- 342
             +   G    A  +    P   D    LS L    ++H     K L   + +   L+D 
Sbjct: 554 TLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLH-----KNLDLGVEIAENLIDK 608

Query: 343 -------------MYAKCGSLTEARTVFDQMR 361
                        MYA  G   E R V  +M+
Sbjct: 609 DPDDSSTYIILSNMYASFGKWDEVRMVRSKMK 640



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 35/225 (15%)

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           +A  +  +L A  +  +L  G+ +H+ V    LQ ++ +   L+ +Y  C     A+ VF
Sbjct: 2   DARKLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVF 61

Query: 358 DQMRCQDVVSW-TSMISAYGMSGQGYDAVALFSK-MLMSGLCPDSIAFVSVLSACS---- 411
           D +     +S    +++ Y  +    +A+ LF K M    L PDS  + SVL AC     
Sbjct: 62  DVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRR 121

Query: 412 -------HAGLLEEGRYY-FKIMTEQYKLVPRIEHFACLVDLLG---------------- 447
                  H  L++EG      + +    +  +   F C V L                  
Sbjct: 122 VVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISC 181

Query: 448 --RAGKVEEA---YDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
             ++GK EEA   + ++++   EP+     + +++C    ++D G
Sbjct: 182 YYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRG 226


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 189/482 (39%), Positives = 273/482 (56%), Gaps = 44/482 (9%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y  C  +   +  FD++  +N+V +N LI  Y  N     AL V+  M   G
Sbjct: 188 MGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCG 247

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN-LFNGNGLVAMYGKCGCLKEA 184
            +PD  T   V  AC+  +++  GLQIH  V+K     N L  GN LV MY KC  + EA
Sbjct: 248 IEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEA 307

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           R V + MP +DVV+  SMV+GYA+                                    
Sbjct: 308 RLVFDRMPLRDVVSETSMVSGYAK------------------------------------ 331

Query: 245 SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
              +V + + MF  +  +N+VSWN +IA Y  N    EAV L+L ++   I P   +  +
Sbjct: 332 -ASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGN 390

Query: 305 VLPACGDLSALLLGRKIHRYVERKKL------QPNLRLENALVDMYAKCGSLTEARTVFD 358
           +L AC +L+ L LGR+ H ++ +           ++ + N+L+DMY KCG + + R VF+
Sbjct: 391 LLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFE 450

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
           +M  +D VSW +MI  Y  +G G +A+ +F +ML+SG  PD +  + VLSACSHAGL+EE
Sbjct: 451 RMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEE 510

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           GR YF+ MT ++ LVP  +H+ C+VDLLGRAG ++EA +LI+ MPMEP+  +WGSL+AAC
Sbjct: 511 GRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAAC 570

Query: 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
            ++ N+ +G   A+ +  + P  SG YVLLSN+YA+ GRW DV RVRK M   G+ K PG
Sbjct: 571 KVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPG 630

Query: 539 AS 540
            S
Sbjct: 631 CS 632



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 155/336 (46%), Gaps = 37/336 (11%)

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D   +  +L  C  S S+     +H  ++K      +F  N LV +YGKCG L++AR+V 
Sbjct: 18  DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
           + M  ++  +WN+++    + G  DEAL++ + M                       PE 
Sbjct: 78  DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCM-----------------------PE- 113

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
                        ++  SWN M++ +A      EA+   + M       N  S  S L A
Sbjct: 114 -------------RDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSA 160

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  L  L +G +IH  + + +   ++ + +ALVDMY+KC  +  A+  FD M  +++VSW
Sbjct: 161 CAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSW 220

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            S+I+ Y  +G    A+ +F +M+  G+ PD I   SV SAC+    + EG      + +
Sbjct: 221 NSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMK 280

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM 464
             K    +     LVD+  +  +V EA  +  +MP+
Sbjct: 281 HDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL 316



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 207/470 (44%), Gaps = 90/470 (19%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           +HA+II  Q   S   I  +L+  YG CG + D R VFD +  +N   +N ++ +     
Sbjct: 41  VHARIIKTQ-FSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFG 99

Query: 110 LYYDALHVYK----------NMSVHGFDP---------------------DCYTYPCVLK 138
              +AL+++K          N  V GF                       + Y++   L 
Sbjct: 100 ALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALS 159

Query: 139 ACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVT 198
           AC+G   L +G+QIH  + K     +++ G+ LV MY KC  +  A+R  +DM  +++V+
Sbjct: 160 ACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVS 219

Query: 199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP-ENVLSVKEMFL 257
           WNS++  Y QNG   +AL+V   M +  I+PD  T+AS+  +  + S     L +    +
Sbjct: 220 WNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVM 279

Query: 258 KLDN--KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           K D    +LV  N ++ +YA      EA  ++ +M +  +                    
Sbjct: 280 KHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVS------------------ 321

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
                                E ++V  YAK  S+  AR +F  M  ++VVSW ++I+ Y
Sbjct: 322 ---------------------ETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGY 360

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----------YYFKI 425
             +G+  +AV LF  +    + P    F ++L+AC++   L+ GR          ++FK 
Sbjct: 361 TQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKS 420

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
             +    V        L+D+  + G VE+   + ++M +E +   W +++
Sbjct: 421 GEDSDIFVGN-----SLIDMYMKCGLVEDGRLVFERM-LERDNVSWNAMI 464



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 43/189 (22%)

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
           A +L  C    ++   R +H  + + +    + ++N LVD+Y KCG L +AR VFD M+ 
Sbjct: 23  AKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQ 82

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           ++  SW +                                   VL A +  G L+E    
Sbjct: 83  RNTFSWNA-----------------------------------VLGALTKFGALDEALNL 107

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP---NERIWGSLVAACC 479
           FK M E+ +       +  +V    +  + EEA   +  M  E    NE  +GS ++AC 
Sbjct: 108 FKCMPERDQC-----SWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACA 162

Query: 480 LYSNMDIGI 488
              ++ IG+
Sbjct: 163 GLMDLSIGV 171


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 197/580 (33%), Positives = 311/580 (53%), Gaps = 46/580 (7%)

Query: 6   LLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPS 65
           L+ RHF  TK +       Q TL   D    +L +    K+L+++H Q+IIN  +H  P+
Sbjct: 10  LISRHF--TKALAKSQRHAQQTLT--DKLLSLLKQCTSTKSLQQIHTQMIINA-IH-KPN 63

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD-ALHVYKNMSVH 124
               L+  +       +   +F +I   N   FN++IR     +  ++  +  Y  M   
Sbjct: 64  F---LLHRFIDLKDFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDF 120

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G  P+ +TYP V  AC+    L  G   H  V+K GL  +    + L+ MY +CG L  A
Sbjct: 121 GIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCA 180

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           RRV +++  KD+V+WNSM++GY++ G   +A+ +  EM     +PD  T+ S+L +  + 
Sbjct: 181 RRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDL 240

Query: 245 SP------------ENVL---------------------SVKEMFLKLDNKNLVSWNVMI 271
                         EN +                     S + +F ++  K++V+WN MI
Sbjct: 241 GDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMI 300

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
             YA N +  EA+ L+  M   G+ P+ I++  VL AC  + AL  G+ +  Y   + LQ
Sbjct: 301 TGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQ 360

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            ++ +  AL+DMYAKCGSL +A  VF+ M  ++ VSW +MISA    G+  ++++LF +M
Sbjct: 361 NDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRM 420

Query: 392 LMSG--LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
              G  + P+ I+F+ VLSAC HAGL++EGR  F +M+  + LVP+IEH +C+VDLL RA
Sbjct: 421 SKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARA 480

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G V EA+D I++MP +P+E + G+L+ AC    N+D+       +  + P  SG Y++ S
Sbjct: 481 GHVHEAWDFIEKMPEKPDEVVLGALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISS 540

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            I+A   RW D  R+R  M  +G+ K PG S +E+ +QV 
Sbjct: 541 KIFANMKRWDDSARMRVLMRQRGVTKTPGCSWIEIENQVH 580


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 177/531 (33%), Positives = 295/531 (55%), Gaps = 65/531 (12%)

Query: 45   KTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
            K  + +H  ++       N  +G +LM  YG  G+M D R VF+ +  ++ V +N ++  
Sbjct: 990  KLCRSVHGHVV-EMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSG 1048

Query: 105  YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA----------------------CSG 142
            Y  NY  + A  +++ M   G +P+  T+  +L +                       + 
Sbjct: 1049 YALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGAT 1108

Query: 143  SNSLLV-------------GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            + +L V             G  IH  VVK G +  LF  N L+ +YGK G +  AR +  
Sbjct: 1109 AEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFL 1168

Query: 190  DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            ++ +K++V+WN++++ YA  G  DEA  +  ++E                  T+  P   
Sbjct: 1169 EIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEK-----------------TDEYP--- 1208

Query: 250  LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                     +   N+VSW+ +I  +A+     EA++L+ +M++  ++ N++++ASVL  C
Sbjct: 1209 ---------MVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVC 1259

Query: 310  GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             +L+AL LGR+IH +V R  +  N+ + N L++MY K GS  E   VF+++  +D++SW 
Sbjct: 1260 AELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWN 1319

Query: 370  SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
            +M++ YG+ G G +A+  F +M+  G  PD + FV+VLSACSHAGL+ EGR  F  M ++
Sbjct: 1320 TMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKE 1379

Query: 430  YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
            +++ P++EH+AC+VDLLGRAG ++EA  ++K MP+EPN  +WG+L+ +C ++ N ++   
Sbjct: 1380 FRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEE 1439

Query: 490  AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
             A  IF+L    +G Y+LLSNIYA +GRW D  +VR    +KG+KK PG S
Sbjct: 1440 TASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQS 1490



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 212/449 (47%), Gaps = 85/449 (18%)

Query: 22   LSTQYTLLSGDACNDILDKYPDI-------KTLKKLHAQIIINQHLHSNPSIGLKLMRTY 74
            LS   +++     ND+LD + D+          +++H+QII+    H +  +  +++  Y
Sbjct: 856  LSRSISIIHHQPNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGS-HRSAFLAARVVSVY 914

Query: 75   GACGQMVDTRHVFDEITN----KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDC 130
               G + D + VF E++      N++ +N ++R+ V +    +AL +Y  M   G   D 
Sbjct: 915  AGFGLVSDAQRVF-EVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADG 973

Query: 131  YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
            +T+P V++AC+   S  +   +H  VV++G  +NL  GN L+ MYGK G + +AR+V   
Sbjct: 974  FTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFER 1033

Query: 191  MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL 250
            M  +  V+WN+MV+GYA N     A ++ R M S  ++P                     
Sbjct: 1034 MAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEP--------------------- 1072

Query: 251  SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
                        NLV+W  +++ +A      E ++L+ +M + GI   A ++A VL    
Sbjct: 1073 ------------NLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSV 1120

Query: 311  DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
            DL+A   G+ IH YV +   +  L ++N+L+ +Y K G++  AR +F +++ +++VSW +
Sbjct: 1121 DLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNA 1180

Query: 371  MISAY---------------------------------------GMSGQGYDAVALFSKM 391
            +IS+Y                                          GQG +A+ LF +M
Sbjct: 1181 LISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 1240

Query: 392  LMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             ++ +  +S+   SVLS C+    L  GR
Sbjct: 1241 QLAKVKANSVTIASVLSVCAELAALHLGR 1269



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 124/271 (45%), Gaps = 26/271 (9%)

Query: 48   KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
            +++H  ++    +  N  +G  L+  Y   G   +   VF++I NK+++ +N ++  Y  
Sbjct: 1269 REIHGHVV-RSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGI 1327

Query: 108  NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYNLF 166
            + L  +A+  +  M   GF+PD  T+  VL ACS +  +  G ++   ++K   ++  + 
Sbjct: 1328 HGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQME 1387

Query: 167  NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG-RFDEALDVCREMESL 225
            +   +V + G+ G L+EA +V+  MP    V  N+ V G   N  R  +  +V  E  S 
Sbjct: 1388 HYACMVDLLGRAGLLQEASKVVKSMP----VEPNACVWGALLNSCRMHKNTEVAEETASQ 1443

Query: 226  RIKPDADTMAS--LLPSVTNTSPENVLSVKEMFLKLDNKNL-----VSW-NVMIAVY--- 274
                +++   S  LL ++   S     S K + +    K L      SW  V   VY   
Sbjct: 1444 IFNLNSEIAGSYMLLSNIYAASGRWEDSAK-VRISAKTKGLKKTPGQSWIQVKKKVYMFS 1502

Query: 275  ANNSMPAEAVDLY-------LQMEVHGIEPN 298
            A N+  AE  ++Y       LQMEV G  P+
Sbjct: 1503 AGNTQHAELEEVYRILKDLGLQMEVEGYIPD 1533


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/520 (35%), Positives = 279/520 (53%), Gaps = 33/520 (6%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S+  IG  L+  Y  CG + D R VFD + +++V+ +N ++     N   ++A  V+  M
Sbjct: 456 SDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQM 515

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              G  PD  TY  +L     +++L    ++H   V+ GL  +   G+  + MY +CG +
Sbjct: 516 QQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSI 575

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS- 240
            +AR + + +  + V TWN+M+ G AQ     EAL +  +M+     PDA T  ++L + 
Sbjct: 576 DDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSAN 635

Query: 241 -------------------------------VTNTSPENVLSVKEMFLKLDNKNLVSWNV 269
                                           T +   NV   K++F  +  +N+ +W +
Sbjct: 636 VDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTM 695

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           MI   A +    +A   +LQM   GI P+A +  S+L AC    AL   +++H +     
Sbjct: 696 MIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAG 755

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           L  +LR+ NALV MYAKCGS+ +AR+VFD M  +DV SWT MI      G+G +A+  F 
Sbjct: 756 LVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFV 815

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           KM   G  P+  ++V+VL+ACSHAGL++EGR  F  MT+ Y + P +EH+ C+VDLLGRA
Sbjct: 816 KMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRA 875

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G +EEA   I  MP+EP++  WG+L+ AC  Y N+++   AA     L P  +  YVLLS
Sbjct: 876 GLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLS 935

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           NIYA  G+W     VR  M  KGI+K PG S +E+++++ 
Sbjct: 936 NIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIH 975



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/475 (28%), Positives = 224/475 (47%), Gaps = 42/475 (8%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           K  DI   K++H   II   +  N  +  KL+R Y  CG++   R VFD++  KN+  + 
Sbjct: 130 KQEDILLAKQVHV-CIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWT 188

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            +I  Y       DA+ VY  M      P+  TY  +LKAC    +L  G +IH  +++ 
Sbjct: 189 TMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQS 248

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G   ++     LV MY KCG +++A+ + + M  ++V++W  M+ G A  GR  EA  + 
Sbjct: 249 GFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLF 308

Query: 220 REMESLRIKPDADTMASLLPSVTNTSPENVLSVKE------------------------- 254
            +M+     P++ T  S+L +  N S   +  VKE                         
Sbjct: 309 LQMQREGFIPNSYTYVSILNA--NASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYA 366

Query: 255 ----------MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
                     +F  +  +++ SW VMI   A +    EA  L+LQM+ +G  PN  +  S
Sbjct: 367 KSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLS 426

Query: 305 VL--PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
           +L   A    SAL   + +H++ E      +LR+ NAL+ MYAKCGS+ +AR VFD M  
Sbjct: 427 ILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCD 486

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           +DV+SW +M+     +G G++A  +F +M   GL PDS  ++S+L+       LE     
Sbjct: 487 RDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEV 546

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            K   E   L+      +  + +  R G +++A  L  ++ +  +   W +++  
Sbjct: 547 HKHAVET-GLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVR-HVTTWNAMIGG 599



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 144/531 (27%), Positives = 245/531 (46%), Gaps = 48/531 (9%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++K  KK+HA II      S+  +   L+  Y  CG + D + +FD++  +NV+ + V+I
Sbjct: 234 NLKWGKKIHAHII-QSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMI 292

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
               +     +A H++  M   GF P+ YTY  +L A + + +L    ++H   V  GL 
Sbjct: 293 GGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLA 352

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            +L  GN LV MY K G + +AR V + M  +D+ +W  M+ G AQ+GR  EA  +  +M
Sbjct: 353 LDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQM 412

Query: 223 ESLRIKPDADTMASLL--PSVTNTSP----------------------ENVL-------- 250
           +     P+  T  S+L   ++ +TS                        N L        
Sbjct: 413 QRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCG 472

Query: 251 SVKEMFLKLD---NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
           S+ +  L  D   +++++SWN M+   A N    EA  ++LQM+  G+ P++ +  S+L 
Sbjct: 473 SIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN 532

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
             G   AL    ++H++     L  + R+ +A + MY +CGS+ +AR +FD++  + V +
Sbjct: 533 THGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTT 592

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W +MI        G +A++LF +M   G  PD+  F+++LSA      LE  +      T
Sbjct: 593 WNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHAT 652

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
           +   +  R+ +   LV    + G V+ A  +   M +E N   W  ++     +     G
Sbjct: 653 DAGLVDLRVGN--ALVHTYSKCGNVKYAKQVFDDM-VERNVTTWTMMIGGLAQHG---CG 706

Query: 488 ILAADHIFHL-----APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
             A  H   +      P+ + Y  +LS   A  G    VK V     S G+
Sbjct: 707 HDAFSHFLQMLREGIVPDATTYVSILSAC-ASTGALEWVKEVHNHAVSAGL 756



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 189/378 (50%), Gaps = 36/378 (9%)

Query: 113 DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV 172
           DA+ + K     G   D ++Y  +L+ C     +L+  Q+H  ++K G++ NL+  N L+
Sbjct: 101 DAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLL 160

Query: 173 AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
            +Y +CG L+ AR+V + +  K++  W +M+ GYA+ G  ++A+ V  +M     +P+  
Sbjct: 161 RVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEI 220

Query: 233 TMASLLPSV----------------------TNTSPENVL--------SVKE---MFLKL 259
           T  S+L +                       ++   E  L        S+++   +F K+
Sbjct: 221 TYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKM 280

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
             +N++SW VMI   A+     EA  L+LQM+  G  PN+ +  S+L A     AL   +
Sbjct: 281 VERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVK 340

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
           ++H +     L  +LR+ NALV MYAK GS+ +AR VFD M  +D+ SWT MI      G
Sbjct: 341 EVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHG 400

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVL--SACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
           +G +A +LF +M  +G  P+   ++S+L  SA +    LE  +   K   E+   +  + 
Sbjct: 401 RGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHK-HAEEAGFISDLR 459

Query: 438 HFACLVDLLGRAGKVEEA 455
               L+ +  + G +++A
Sbjct: 460 IGNALIHMYAKCGSIDDA 477



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 168/387 (43%), Gaps = 43/387 (11%)

Query: 23  STQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD 82
           +T  +LL+     D L+   ++      HA   +   L S+  +G   +  Y  CG + D
Sbjct: 525 TTYLSLLNTHGSTDALEWVNEVHK----HA---VETGLISDFRVGSAFIHMYIRCGSIDD 577

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
            R +FD+++ ++V  +N +I          +AL ++  M   GF PD  T+  +L A   
Sbjct: 578 ARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVD 637

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
             +L    ++H      GL  +L  GN LV  Y KCG +K A++V +DM  ++V TW  M
Sbjct: 638 EEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMM 696

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP---------------- 246
           + G AQ+G   +A     +M    I PDA T  S+L +  +T                  
Sbjct: 697 IGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGL 756

Query: 247 -----------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
                             ++   + +F  +  +++ SW VMI   A +    EA+D +++
Sbjct: 757 VSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVK 816

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRK-IHRYVERKKLQPNLRLENALVDMYAKCG 348
           M+  G +PN  S  +VL AC     +  GR+      +   ++P +     +VD+  + G
Sbjct: 817 MKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAG 876

Query: 349 SLTEARTVFDQMRCQ-DVVSWTSMISA 374
            L EA      M  + D   W +++ A
Sbjct: 877 LLEEAELFILNMPIEPDDAPWGALLGA 903



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 147/316 (46%), Gaps = 52/316 (16%)

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           +++F KL  KN+  W  MI  YA      +A+ +Y +M     +PN I+  S+L AC   
Sbjct: 173 RQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCP 232

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
             L  G+KIH ++ +   Q ++R+E ALV+MY KCGS+ +A+ +FD+M  ++V+SWT MI
Sbjct: 233 VNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMI 292

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE--------------- 417
                 G+G +A  LF +M   G  P+S  +VS+L+A + AG LE               
Sbjct: 293 GGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLA 352

Query: 418 --------------------EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
                               + R  F  MTE+      I  +  ++  L + G+ +EA+ 
Sbjct: 353 LDLRVGNALVHMYAKSGSIDDARVVFDGMTER-----DIFSWTVMIGGLAQHGRGQEAFS 407

Query: 458 LIKQMPME---PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV------LL 508
           L  QM      PN   + S++ A  + S      L    + H    ++G+         L
Sbjct: 408 LFLQMQRNGCLPNLTTYLSILNASAIAST---SALEWVKVVHKHAEEAGFISDLRIGNAL 464

Query: 509 SNIYAKAGRWGDVKRV 524
            ++YAK G   D + V
Sbjct: 465 IHMYAKCGSIDDARLV 480



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 129/270 (47%), Gaps = 16/270 (5%)

Query: 272 AVYANNSMPAEAVDLYLQMEVH-GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
           A   +N + A+     L++ V  GI  ++ S  ++L  C     +LL +++H  + +  +
Sbjct: 90  AEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGM 149

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
           + NL + N L+ +Y +CG L  AR VFD++  +++  WT+MI  Y   G   DA+ ++ K
Sbjct: 150 EQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDK 209

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEG-RYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           M      P+ I ++S+L AC     L+ G + +  I+   ++   R+E    LV++  + 
Sbjct: 210 MRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVE--TALVNMYVKC 267

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY----- 504
           G +E+A  +  +M +E N   W  ++     Y         A H+F L   + G+     
Sbjct: 268 GSIEDAQLIFDKM-VERNVISWTVMIGGLAHYGRGQ----EAFHLF-LQMQREGFIPNSY 321

Query: 505 -YVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
            YV + N  A AG    VK V     + G+
Sbjct: 322 TYVSILNANASAGALEWVKEVHSHAVNAGL 351



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 107/219 (48%), Gaps = 7/219 (3%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++ +K++H   + +  L S+  +G  L+  Y  CG + D R VFD++  ++V  + V+I 
Sbjct: 741 LEWVKEVHNHAV-SAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIG 799

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLD 162
               +    +AL  +  M   GF P+ Y+Y  VL ACS +  +  G +   S+ +  G++
Sbjct: 800 GLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIE 859

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCRE 221
             + +   +V + G+ G L+EA   + +MP + D   W +++      G  + A    + 
Sbjct: 860 PTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAK- 918

Query: 222 MESLRIKPDADTMASLLPSVTNTSP--ENVLSVKEMFLK 258
            E L++KP + +   LL ++   +   E  L V+ M  +
Sbjct: 919 -ERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQR 956


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 171/505 (33%), Positives = 288/505 (57%), Gaps = 40/505 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++HA +I   ++  N  +  +L+  Y  CG++   + +F+ +  +N   +N +I  Y  
Sbjct: 499 RQIHAHLI-RANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQ 557

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    +AL ++K M ++G  PDC++   +L +C   +    G ++H  +V+  ++     
Sbjct: 558 NGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGIL 617

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              LV MY KCG +  A +V +    KDV+  N MV+ +  +GR ++A            
Sbjct: 618 QVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDA------------ 665

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
                                    K +F +++ +N   WN ++A YAN  +  E+ + +
Sbjct: 666 -------------------------KNLFDQMEQRNTALWNSILAGYANKGLKKESFNHF 700

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL-QPNLRLENALVDMYAK 346
           L+M    IE + +++ +++  C  L AL  G ++H  + +K     ++ LE ALVDMY+K
Sbjct: 701 LEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSK 760

Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
           CG++T+ARTVFD M  +++VSW +MIS Y   G   +A+ L+ +M   G+ P+ + F+++
Sbjct: 761 CGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAI 820

Query: 407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP 466
           LSACSH GL+EEG   F  M E Y +  + EH+ C+VDLLGRAG++E+A + +++MP+EP
Sbjct: 821 LSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEP 880

Query: 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526
               WG+L+ AC ++ +MD+G LAA  +F L P   G YV++SNIYA AGRW +V+ +R+
Sbjct: 881 EVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQ 940

Query: 527 FMNSKGIKKMPGAS-VEMNDQVQII 550
            M  KG+KK PG S +E+N ++QI 
Sbjct: 941 MMKMKGVKKDPGVSWIEINSEIQIF 965



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 215/453 (47%), Gaps = 36/453 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+  +++L + ++    L+ N  +G  L+  Y   G M D     DEI   +VV +N +I
Sbjct: 190 DMGGVRQLQSSVV-KAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVI 248

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             YV    + +A  ++  M   G  PD +T+   L+ C    S   G Q+H  ++  G  
Sbjct: 249 AGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFK 308

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            + F GN L+ MY KC   +   +V ++M  ++ VTWNS+++  AQ G F++AL +   M
Sbjct: 309 GDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRM 368

Query: 223 ESLRIKPDADTMASLLPS-----------------VTNTSPENVL--------------- 250
           +    K +   + S+L +                 V N    +++               
Sbjct: 369 QESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMV 428

Query: 251 -SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVASVLPA 308
               ++F  L  +N VS+N ++A Y       EA++LY  M+   GI+P+  +  ++L  
Sbjct: 429 EEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTL 488

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C +      GR+IH ++ R  +  N+ +E  LV MY++CG L  A+ +F++M  ++  SW
Sbjct: 489 CANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSW 548

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            SMI  Y  +G+  +A+ LF +M ++G+ PD  +  S+LS+C      ++GR     +  
Sbjct: 549 NSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVR 608

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
                  I     LVD+  + G ++ A+ +  Q
Sbjct: 609 NTMEEEGILQ-VVLVDMYAKCGSMDYAWKVYDQ 640



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 130/469 (27%), Positives = 226/469 (48%), Gaps = 44/469 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGL--KLMRTYGACGQMVD---TRHVFDEITNKNVVFFNVLI 102
           K +H Q+I N +   NP   L  K++  Y   G + D    R +F+E+  +N+  +N +I
Sbjct: 91  KSIHTQMISNGY---NPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMI 147

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            +Y     Y + L +Y  M   G   D +T+P V+KAC     +    Q+  SVVK GL+
Sbjct: 148 LAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLN 207

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            NLF G  LV  Y + G + +A   L+++    VVTWN+++AGY +   ++EA  +   M
Sbjct: 208 CNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRM 267

Query: 223 ESLRIKPDADTMASLLPSV----------------------TNTSPENVL---------- 250
             + + PD  T AS L                          +T   N L          
Sbjct: 268 LKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDE 327

Query: 251 -SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            S  ++F ++  +N V+WN +I+  A      +A+ L+L+M+  G + N  ++ S+L A 
Sbjct: 328 ESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMAS 387

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L+ +  GR++H ++ R  L  ++ L +ALVDMY+KCG + EA  VF  +  ++ VS+ 
Sbjct: 388 AGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYN 447

Query: 370 SMISAYGMSGQGYDAVALFSKMLMS-GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
           ++++ Y   G+  +A+ L+  M    G+ PD   F ++L+ C++     +GR     +  
Sbjct: 448 ALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLI- 506

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           +  +   I     LV +    G++  A ++  +M  E N   W S++  
Sbjct: 507 RANITKNIIVETELVHMYSECGRLNYAKEIFNRMA-ERNAYSWNSMIEG 554



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 177/385 (45%), Gaps = 46/385 (11%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE---ARRVLN 189
           Y  +++ C  SNS   G  IH  ++  G + + +    ++ +Y + GCL +   AR++  
Sbjct: 74  YSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFE 133

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT--SPE 247
           +MP +++  WN+M+  YA   R D+ ++V R    +R   +     +  PSV     + E
Sbjct: 134 EMPERNLTAWNTMILAYA---RVDDYMEVLRLYGRMRGSGNFSDKFT-FPSVIKACIAME 189

Query: 248 NVLSVKEM-----------------------------------FLKLDNKNLVSWNVMIA 272
           ++  V+++                                     +++  ++V+WN +IA
Sbjct: 190 DMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIA 249

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y       EA  ++ +M   G+ P+  + AS L  CG L +   G+++H  +     + 
Sbjct: 250 GYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKG 309

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           +  + NAL+DMYAKC        VFD+M  ++ V+W S+ISA    G   DA+ LF +M 
Sbjct: 310 DTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQ 369

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
            SG   +     S+L A +    + +GR     +     L   I   + LVD+  + G V
Sbjct: 370 ESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNL-LNSDIILGSALVDMYSKCGMV 428

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAA 477
           EEA+ + + + +E NE  + +L+A 
Sbjct: 429 EEAHQVFRSL-LERNEVSYNALLAG 452



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 159/344 (46%), Gaps = 17/344 (4%)

Query: 192 PSKDV--VTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS-PEN 248
           P+ DV  + ++S++     +  F     +  +M S    PDA  M  +L     +   ++
Sbjct: 65  PASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDD 124

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           +   +++F ++  +NL +WN MI  YA      E + LY +M   G   +  +  SV+ A
Sbjct: 125 LCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKA 184

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  +  +   R++   V +  L  NL +  ALVD YA+ G + +A T  D++    VV+W
Sbjct: 185 CIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTW 244

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY-YFKIMT 427
            ++I+ Y       +A  +F +ML  G+CPD+  F S L  C      + G+  + K++ 
Sbjct: 245 NAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIA 304

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
             +K    + +   L+D+  +    E    +  +M  E N+  W S+++A   + + +  
Sbjct: 305 CGFKGDTFVGN--ALIDMYAKCDDEESCLKVFDEMG-ERNQVTWNSIISAEAQFGHFNDA 361

Query: 488 ILAADHIFHLAPNQSGY----YVLLSNIYAKAGRWGDVKRVRKF 527
           +     +  L   +SGY    + L S + A AG   D+ + R+ 
Sbjct: 362 L-----VLFLRMQESGYKSNRFNLGSILMASAG-LADIGKGREL 399



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 140/324 (43%), Gaps = 46/324 (14%)

Query: 17  VQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGA 76
           ++ L    +Y +L+     ++    P ++   +LH+ II    ++ +  +   L+  Y  
Sbjct: 701 LEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSK 760

Query: 77  CGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCV 136
           CG +   R VFD +  KN+V +N +I  Y  +    +AL +Y+ M   G  P+  T+  +
Sbjct: 761 CGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAI 820

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNL----FNGNGLVAMYGKCGCLKEARRVLNDMP 192
           L ACS +  +  GL+I  S+ +   DYN+     +   +V + G+ G L++A+  +  MP
Sbjct: 821 LSACSHTGLVEEGLRIFTSMQE---DYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMP 877

Query: 193 -SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS 251
              +V TW ++             L  C      R+  D D                 L+
Sbjct: 878 IEPEVSTWGAL-------------LGAC------RVHKDMDM--------------GRLA 904

Query: 252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
            + +F +LD +N   + +M  +YA      E  D+   M++ G++ +     S +    +
Sbjct: 905 AQRLF-ELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDP--GVSWIEINSE 961

Query: 312 LSALLLGRKIHRYVERKKLQPNLR 335
           +     G K H   E  ++  NLR
Sbjct: 962 IQIFHAGSKTHPKTE--EIYNNLR 983


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 196/597 (32%), Positives = 316/597 (52%), Gaps = 77/597 (12%)

Query: 23  STQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD 82
           +  + L+  +    +L+    +  +K++HAQ+I    +    S G  L R    C  + +
Sbjct: 46  NASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLI----SDGFALSRLVAFCA-ISE 100

Query: 83  TRH------VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD-PDCYTYPC 135
            R+      + +   N NV  +N+ IR YV +    +A+ +Y+NM   G   PD YTYP 
Sbjct: 101 WRNLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPL 160

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
           + K C+G +      +I   V+++G D +LF  N ++ +   CG L  AR++ ++   +D
Sbjct: 161 LFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRD 220

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN------------ 243
           +V+WNS++ GY + G  DEA D+  +M  L + PD  TM  ++ +               
Sbjct: 221 LVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQ 280

Query: 244 ---------TSP------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYAN------ 276
                    T P            +N+ + K +F  +  K +VSW  M+  YA       
Sbjct: 281 SIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLES 340

Query: 277 -----NSMPA--------------------EAVDLYLQMEVHGIEPNAISVASVLPACGD 311
                N MP                     EA+ L+ +M+   + P+ I+V + L AC  
Sbjct: 341 AVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQ 400

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           L AL +G  +H YV++  L  N+ L  ALVDMYAKCG++ +A  VF++M  ++ ++WT++
Sbjct: 401 LGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAI 460

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           I    + GQ + A++ FS+M+  GL PD I F+ VLSAC H GL+++GR YF  MT +Y 
Sbjct: 461 ICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYG 520

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
           + P+++H++CLVDLLGRAG +EEA +LI+ MP EP+  +WG+L     ++ N+ +G  AA
Sbjct: 521 ISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAA 580

Query: 492 DHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
             +  L P+  G YVLL+N+Y  A  W   ++VRK M  +G++K PG +S+EMN  V
Sbjct: 581 SKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLV 637



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 157/365 (43%), Gaps = 32/365 (8%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N ++D Y   K ++   A+I+              ++  Y   G +     +F+E+  K+
Sbjct: 295 NALMDMYIKCKNIEA--AKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKD 352

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
           VV +N LI  +V      +AL ++  M      PD  T    L ACS   +L VG+ +H 
Sbjct: 353 VVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHH 412

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            V K  L  N+  G  LV MY KCG +K+A +V  +MP ++ +TW +++ G A +G+   
Sbjct: 413 YVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHA 472

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS-----WNV 269
           A+    EM S+ + PD  T   +L +  +     V   ++ F ++ +K  +S     ++ 
Sbjct: 473 AISYFSEMISIGLVPDEITFIGVLSACCHGGL--VDQGRDYFYQMTSKYGISPKLKHYSC 530

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           ++ +        EA +L   M     EP+A+             AL  G +IH  V   +
Sbjct: 531 LVDLLGRAGFLEEAEELIRSMP---FEPDAVV----------WGALFFGSRIHGNVHMGE 577

Query: 330 LQPNLRLE---------NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
              +  LE           L +MY       +AR V   M  + V   T   S+  M+G 
Sbjct: 578 RAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEK-TPGCSSIEMNGL 636

Query: 381 GYDAV 385
            YD +
Sbjct: 637 VYDFI 641


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 193/553 (34%), Positives = 303/553 (54%), Gaps = 44/553 (7%)

Query: 24  TQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT 83
           T  ++LS  AC + L+        ++LH+  II  +   N  +   L+  Y  CG + + 
Sbjct: 452 TYTSILSACACLECLE------MGRQLHS-FIIKHNFEYNLFVENTLVDMYAKCGALEEA 504

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
           R  F+ I N++ V +N +I  YV      +A ++++ M + G  PD  +   +L  C+  
Sbjct: 505 RQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANL 564

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
            +L  G Q+HC +VK GL   L+ G+ L+ MY KCG ++ AR V + MPS+ VV+ N+++
Sbjct: 565 QALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAII 624

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV-------------- 249
           AGYAQN    EA+D+ +EM++  + P   T ASLL + T     N+              
Sbjct: 625 AGYAQND-LVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLL 683

Query: 250 -----LSVKEMFLKLDN----------------KNLVSWNVMIAVYANNSMPAEAVDLYL 288
                L V  + + +++                K+ + W  +I+ +  N    EA+ LY 
Sbjct: 684 YDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQ 743

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           +M  +   P+  + ASVL AC  L++L  GR IH  +    L  +    +A+VDMYAKCG
Sbjct: 744 EMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCG 803

Query: 349 SLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
            +  +  VF++M  + DV+SW SMI  +  +G   +A+ +F +M  + + PD + F+ VL
Sbjct: 804 DMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVL 863

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
           +ACSHAG + EGR  F IM   YK+VPR++H AC++DLLGR G ++EA + I ++  EPN
Sbjct: 864 TACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPN 923

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527
             IW +L+ AC ++ +   G  AA+ +  L P  S  YVLLSNIYA +G W +V  VR+ 
Sbjct: 924 AMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDEVNSVRRA 983

Query: 528 MNSKGIKKMPGAS 540
           M  KG++K+PG S
Sbjct: 984 MREKGLRKLPGCS 996



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/412 (29%), Positives = 216/412 (52%), Gaps = 6/412 (1%)

Query: 45  KTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           +T K +HAQ +      S   +G  ++  Y  CG +      F+++  ++++ +N ++  
Sbjct: 98  RTSKTIHAQTL-KFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSM 156

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
           Y         +  + ++   G  P+ +TY  VL +C+    + +G Q+HC V+K+G ++N
Sbjct: 157 YSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFN 216

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
            F    L+ MY KCG L +AR++ + +   D V+W +M+AGY Q G  +EAL V  +M+ 
Sbjct: 217 SFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQK 276

Query: 225 LRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAV 284
           L + PD     +++ +        +    ++F+++ N N+V+WNVMI+ +       EA+
Sbjct: 277 LGLVPDQVAFVTVITACVGLG--RLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAI 334

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMY 344
           D +  M   G++    ++ SVL A   L AL  G  +H    ++ L  N+ + ++L++MY
Sbjct: 335 DFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMY 394

Query: 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404
           AKC  +  A+ VFD +  +++V W +M+  Y  +G     + LFS+M   G  PD   + 
Sbjct: 395 AKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYT 454

Query: 405 SVLSACSHAGLLEEGRYYFK-IMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           S+LSAC+    LE GR     I+   ++    +E+   LVD+  + G +EEA
Sbjct: 455 SILSACACLECLEMGRQLHSFIIKHNFEYNLFVEN--TLVDMYAKCGALEEA 504



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/454 (27%), Positives = 208/454 (45%), Gaps = 70/454 (15%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           DI   K++H  +I       N      L+  Y  CG +VD R +FD + + + V +  +I
Sbjct: 197 DIDLGKQVHCGVI-KMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMI 255

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             YV   L  +AL V+++M   G  PD   +  V+ AC                  VGL 
Sbjct: 256 AGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITAC------------------VGL- 296

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
                           G L +A  +   MP+ +VV WN M++G+ + G   EA+D  + M
Sbjct: 297 ----------------GRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNM 340

Query: 223 ESLRIKPDADTMASLLPSVTNTSP---------------------------------ENV 249
               +K    T+ S+L ++ +                                    E +
Sbjct: 341 WKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKM 400

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            + K++F  LD +NLV WN M+  YA N   ++ + L+ +M   G  P+  +  S+L AC
Sbjct: 401 EAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSAC 460

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L  L +GR++H ++ +   + NL +EN LVDMYAKCG+L EAR  F+ +R +D VSW 
Sbjct: 461 ACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWN 520

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           ++I  Y       +A  +F +M++ G+ PD ++  S+LS C++   LE+G      + + 
Sbjct: 521 AIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKS 580

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
             L   +   + L+D+  + G +E A  +   MP
Sbjct: 581 -GLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMP 613



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 146/292 (50%), Gaps = 13/292 (4%)

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
           NV    + F +L+ +++++WN ++++Y+      + +  +  ++  G+ PN  + A VL 
Sbjct: 131 NVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLS 190

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           +C  L  + LG+++H  V +   + N   E +L+DMY+KCGSL +AR +FD +   D VS
Sbjct: 191 SCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVS 250

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           WT+MI+ Y   G   +A+ +F  M   GL PD +AFV+V++AC   G L++    F  M 
Sbjct: 251 WTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQM- 309

Query: 428 EQYKLVPRIEHFACLVDLLG--RAGKVEEAYDLIKQM---PMEPNERIWGSLVAACCLYS 482
                 P     A  V + G  + G   EA D  K M    ++      GS+++A     
Sbjct: 310 ------PNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLE 363

Query: 483 NMDIGILAADHIFHLAPNQSGYY-VLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
            ++ G+L          N + Y    L N+YAK  +    K+V   ++ + +
Sbjct: 364 ALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNL 415



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/449 (20%), Positives = 178/449 (39%), Gaps = 106/449 (23%)

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           IH   +K G       G+ +V +Y KCG ++ A +  N +  +D++ WNS+++ Y++ G 
Sbjct: 103 IHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGS 162

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVT----------------------NTSPENV 249
            ++ +     +++  + P+  T A +L S                        N+  E  
Sbjct: 163 LEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGS 222

Query: 250 L-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
           L             +++F  + + + VSW  MIA Y    +P EA+ ++  M+  G+ P+
Sbjct: 223 LIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPD 282

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
            ++  +V+ AC  L                                   G L +A  +F 
Sbjct: 283 QVAFVTVITACVGL-----------------------------------GRLDDACDLFV 307

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS------- 411
           QM   +VV+W  MIS +   G   +A+  F  M  +G+        SVLSA +       
Sbjct: 308 QMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNY 367

Query: 412 ----HAGLLEEGR----YYFKIMTEQYKLVPRIEHFACLVDLL----------------- 446
               HA  +++G     Y    +   Y    ++E    + D L                 
Sbjct: 368 GLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQ 427

Query: 447 -GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN-QSGY 504
            G A KV + +  ++     P+E  + S+++AC     +++G     H F +  N +   
Sbjct: 428 NGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMG--RQLHSFIIKHNFEYNL 485

Query: 505 YV--LLSNIYAKAGRWGDVKRVRKFMNSK 531
           +V   L ++YAK G   + ++  +F+ ++
Sbjct: 486 FVENTLVDMYAKCGALEEARQQFEFIRNR 514


>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 871

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 187/542 (34%), Positives = 298/542 (54%), Gaps = 42/542 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           DI    KLH  I+ +    ++  +   L+  Y  CG++ D R VFDEI +++VV +  +I
Sbjct: 150 DIVLTTKLHCNILKSNA--ADSFVLTSLVDAYSKCGKLRDARKVFDEIPDRSVVSWTSMI 207

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            +YV N    + L ++  M     D + +T   ++ AC+    L  G  +H  V+K G++
Sbjct: 208 VAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGCLHQGKWVHGYVIKNGIE 267

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMP------SKDVVTWNSMVAGYAQNGRFDEAL 216
            N +    L+ MY KCG + +AR V ++          D+V W +M+ GY Q G    AL
Sbjct: 268 INSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAAL 327

Query: 217 DVCREMESLRIKPDADTMASLLPS---------------------VTNTSPENVL----- 250
           ++  + +  RI P++ T+ASLL +                     + +TS  N L     
Sbjct: 328 ELFTDKKWYRILPNSVTLASLLSACAQLENIVMGKLLHVLVVKYGLDDTSLRNSLVDMYA 387

Query: 251 ------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
                     +F    +K++VSWN +I+ YA +    EA+DL+ +M +    P+A++V  
Sbjct: 388 KCGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTVVG 447

Query: 305 VLPACGDLSALLLGRKIHRYVERKKL-QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           VL AC  + A  +G  +H +  +  L   ++ +  AL++ YAKCG  T AR VFD M  +
Sbjct: 448 VLSACASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGMGEK 507

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           + V+W +MI   GM G G  ++ALF  ML   L P+ + F ++L+ACSH+G++EEG   F
Sbjct: 508 NAVTWAAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAACSHSGMVEEGLMIF 567

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
             M ++   VP ++H+AC+VDLL RAG ++EA D I +MP++P   ++G+ +  C L+SN
Sbjct: 568 DFMCKELNFVPSMKHYACMVDLLARAGNLQEALDFIDKMPVQPGVGVFGAFLHGCGLHSN 627

Query: 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VE 542
            D G +A   +  L P+Q+ YYVL+SN+YA  GRWG VK VR+ +  +G+ K+PG S VE
Sbjct: 628 FDFGEVAIRRMLELHPDQACYYVLISNLYASDGRWGMVKEVREMIKQRGLNKVPGVSLVE 687

Query: 543 MN 544
           M+
Sbjct: 688 MD 689



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 140/517 (27%), Positives = 237/517 (45%), Gaps = 62/517 (11%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           K+P   T+K LHA +II+ H      I L     Y + G +   R +F  + +     F 
Sbjct: 51  KHP--TTVKTLHASLIISGHPPDTTLISL-----YASFGFLRHARTLFHRLPSPTHHSFK 103

Query: 100 VLIRSYVNNYLYYDALHVYK--NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           ++IR +  N ++   +  Y     ++  F+ D   +  +LK  S    +++  ++HC+++
Sbjct: 104 LIIRWHFLNDVHSHVVSFYNLARTTLGSFN-DLVVFSILLKTASQLRDIVLTTKLHCNIL 162

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           K     + F    LV  Y KCG L++AR+V +++P + VV+W SM+  Y QN   +E L 
Sbjct: 163 KSNAA-DSFVLTSLVDAYSKCGKLRDARKVFDEIPDRSVVSWTSMIVAYVQNECAEEGLM 221

Query: 218 VCREMESLRIKPDADTMASLLPSVT--------------------NTSPENVLSVKEMFL 257
           +   M    +  +  T+ SL+ + T                      +     S+  M++
Sbjct: 222 LFNRMREGFLDGNVFTVGSLVTACTKLGCLHQGKWVHGYVIKNGIEINSYLATSLLNMYV 281

Query: 258 KLDN-------------------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
           K  +                    +LV W  MI  Y     P  A++L+   + + I PN
Sbjct: 282 KCGDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTDKKWYRILPN 341

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
           ++++AS+L AC  L  +++G+ +H  V +  L  +  L N+LVDMYAKCG + +A  VF 
Sbjct: 342 SVTLASLLSACAQLENIVMGKLLHVLVVKYGLD-DTSLRNSLVDMYAKCGLIPDAHYVFA 400

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
               +DVVSW S+IS Y  SG  Y+A+ LF++M M    PD++  V VLSAC+  G  + 
Sbjct: 401 TTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTVVGVLSACASVGAHQI 460

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           G        +   +   I     L++   + G    A  +   M  E N   W +++  C
Sbjct: 461 GLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGMG-EKNAVTWAAMIGGC 519

Query: 479 CLYSNMDIGILAADHIF------HLAPNQSGYYVLLS 509
            +  +  +G LA   +F       L PN+  +  LL+
Sbjct: 520 GMQGD-GVGSLA---LFRDMLKEELVPNEVVFTTLLA 552


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 179/516 (34%), Positives = 296/516 (57%), Gaps = 36/516 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y     ++D R +FD++  ++ V +N +I  Y    LY +++ ++  M V+ F PD
Sbjct: 257 LLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPD 315

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   +L+AC     L  G  +H  ++  G + +    N L+ MY KCG L  ++ V +
Sbjct: 316 LLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFS 375

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
            M  KD V+WNSM+  Y QNG FDEA+ + + M++  +KPD+ T   LL           
Sbjct: 376 GMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKT-DVKPDSVTYVMLLSMSTQLGDLHL 434

Query: 241 ------------------VTNTSPENVLSVKEM------FLKLDNKNLVSWNVMIAVYAN 276
                             V+NT  +      EM      F  +  +++++WN +IA   +
Sbjct: 435 GKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVH 494

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           +      + +  +M   G+ P+  ++ S+LP C  L+A   G++IH  + +  L+ ++ +
Sbjct: 495 SEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPV 554

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            N L++MY+KCGSL  +  VF  M+ +DVV+WT++ISA GM G+G  AV  F +M  +G+
Sbjct: 555 GNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGI 614

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PD +AFV+++ ACSH+GL+EEG  YF  M + YK+ PRIEH+AC+VDLL R+  +++A 
Sbjct: 615 VPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAE 674

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           D I  MP++P+  IWG+L++AC +  + +I    ++ I  L P+ +GYYVL+SNIYA  G
Sbjct: 675 DFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALG 734

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIA 551
           +W  V+ +RK + ++G+KK PG S +E+ ++V +  
Sbjct: 735 KWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFG 770



 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 138/476 (28%), Positives = 244/476 (51%), Gaps = 39/476 (8%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT-NKNVVFFNVLIRSY 105
           L KLH+ +II   LH +     KL+  Y        +  VF   + + NV  +N +IR+ 
Sbjct: 32  LHKLHS-LIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRAL 90

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
            +N L+ +AL +Y         PD YT+P V+ AC+G     +   IH  V+ +G   +L
Sbjct: 91  THNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDL 150

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           + GN L+ MY +   L +AR+V  +MP +DVV+WNS+++GY  NG ++EAL++     +L
Sbjct: 151 YIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNL 210

Query: 226 RIKPDADTMASLLPSVTNTSP---------------------------------ENVLSV 252
            + PD+ TM+S+L +                                         ++  
Sbjct: 211 GVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDG 270

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           + +F K+  ++ VSWN MI  Y+   +  E++ L+++M V+  +P+ +++ S+L ACG L
Sbjct: 271 RRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHL 329

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
             L  G+ +H Y+     + +    N L++MYAKCG+L  ++ VF  M+C+D VSW SMI
Sbjct: 330 GDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMI 389

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           + Y  +G   +A+ LF KM+ + + PDS+ +V +LS  +  G L  G+     + +    
Sbjct: 390 NVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKM-GF 447

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
              I     LVD+  + G++ ++  + + M    +   W +++A+C    + ++G+
Sbjct: 448 NSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASCVHSEDCNLGL 502



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/487 (27%), Positives = 244/487 (50%), Gaps = 50/487 (10%)

Query: 32  DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
           +AC  +LD     +  K +H +++ +    S+  IG  L+  Y     +   R VF+E+ 
Sbjct: 123 NACAGLLD----FEMAKSIHDRVL-DMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMP 177

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
            ++VV +N LI  Y  N  + +AL +Y      G  PD YT   VL+AC G  S+  G  
Sbjct: 178 LRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDI 237

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           IH  + K+G+  ++   NGL++MY K   L + RR+ + M  +D V+WN+M+ GY+Q G 
Sbjct: 238 IHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGL 297

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSV----------------------TNTSPENV 249
           ++E++ +  EM + + KPD  T+ S+L +                        +T+  N+
Sbjct: 298 YEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNI 356

Query: 250 L-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
           L           + +E+F  +  K+ VSWN MI VY  N    EA+ L+  M+   ++P+
Sbjct: 357 LINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPD 415

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
           +++   +L     L  L LG+++H  + +     N+ + N LVDMYAKCG + ++  VF+
Sbjct: 416 SVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFE 475

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
            M+ +D+++W ++I++   S      + + S+M   G+ PD    +S+L  CS      +
Sbjct: 476 NMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQ 535

Query: 419 GRY----YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
           G+      FK+  E    V  +     L+++  + G +  ++ + K M  + +   W +L
Sbjct: 536 GKEIHGCIFKLGLESDVPVGNV-----LIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTAL 589

Query: 475 VAACCLY 481
           ++AC +Y
Sbjct: 590 ISACGMY 596



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 169/363 (46%), Gaps = 25/363 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   K+LH  +      +SN  +   L+  Y  CG+M D+  VF+ +  ++++ +N +I
Sbjct: 431 DLHLGKELHCDLA-KMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTII 489

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            S V++      L +   M   G  PD  T   +L  CS   +   G +IH  + K+GL+
Sbjct: 490 ASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLE 549

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++  GN L+ MY KCG L+ + +V   M +KDVVTW ++++     G   +A+    EM
Sbjct: 550 SDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEM 609

Query: 223 ESLRIKPDADTMASLLPSVTNTS--PENVLSVKEMFLKLDNK---NLVSWNVMIAVYANN 277
           E+  I PD     +++ + +++    E +     M  K D K    +  +  ++ + + +
Sbjct: 610 EAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRM--KKDYKIEPRIEHYACVVDLLSRS 667

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPAC---GDLSALLLGRKIHRYVERKKLQPNL 334
           ++  +A D  L M    ++P++    ++L AC   GD    +  R   R +E   L P+ 
Sbjct: 668 ALLDKAEDFILSMP---LKPDSSIWGALLSACRMSGDTE--IAERVSERIIE---LNPDD 719

Query: 335 RLENALV-DMYAKCGSLTEARTVFDQMRCQDV-----VSWTSMISAYGMSGQGYDAVALF 388
                LV ++YA  G   + R++   ++ + +      SW  + +   + G G      F
Sbjct: 720 TGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQF 779

Query: 389 SKM 391
            ++
Sbjct: 780 EEV 782


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 187/562 (33%), Positives = 305/562 (54%), Gaps = 54/562 (9%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---- 92
           +L     ++ +K++HA II      S  ++ +  + T        D  H+ D I N    
Sbjct: 32  LLSSCKSVREIKQIHASIIKANTTRSTTTLPIISLCTKITSLLQQDV-HLADSIQNLWYA 90

Query: 93  --------KNVVF-FNVLIRSY-VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
                   +N V+ FN +I+S   +N  +     +Y+ M + G  PD YT P +LKACS 
Sbjct: 91  SSLANFCHQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQ 150

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
           S++ +  LQIH   +K GL  NLF  N L+  Y   G ++   +V +  P  D+++W ++
Sbjct: 151 SHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTL 210

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN----TSPENVLS------- 251
           +  Y++ G   EA+     M       D  T+  +L + +     T  + +L+       
Sbjct: 211 IQAYSKMGYPSEAIAAFFRMNC---TADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLF 267

Query: 252 ------------------------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
                                    +++F  +  KNLVSWN MI+  A+  +  EA+ ++
Sbjct: 268 DVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMF 327

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
            +M+  G++P+++++  VL +C +L  L LG+ +H Y+++  ++ +  + NALVDMYAKC
Sbjct: 328 RRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKC 387

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           GS+ +A  VF  M+C+DV S+T+MI  + M G+   A+A+FS+M   G+ PD +  V VL
Sbjct: 388 GSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVL 447

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
           SACSHAGLLEEGR +F+ M+  Y L P+ EH+ C+VDLLGRAG + EA     +MP+ P+
Sbjct: 448 SACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPD 507

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527
             +WGSL+ AC +++ +++G      +  + P + G Y+L+SNIY+ A RW D  + RK 
Sbjct: 508 ASVWGSLLGACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSANRWRDALKWRKA 567

Query: 528 MNSKGIKKMPG-ASVEMNDQVQ 548
           M    IKK PG +S+E++  V 
Sbjct: 568 MKQNNIKKTPGCSSIEVDGMVH 589


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 184/528 (34%), Positives = 295/528 (55%), Gaps = 34/528 (6%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           +P     L+  Y   G + D   VF++I   ++V +N +I   V +  +  AL +   M 
Sbjct: 292 DPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK 351

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
             G  P+ +T    LKAC+G     +G Q+H S++K+ ++ +LF   GLV MY KC  L+
Sbjct: 352 RSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLE 411

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
           +AR   N +P KD++ WN++++GY+Q     EAL +  EM    I  +  T++++L S  
Sbjct: 412 DARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTA 471

Query: 243 NTSPENV------LSVK---------------------------EMFLKLDNKNLVSWNV 269
                +V      LSVK                            +F +    +LVS+  
Sbjct: 472 GLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTS 531

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           MI  YA      EA+ L+L+M+   ++P+    +S+L AC +LSA   G+++H ++ +  
Sbjct: 532 MITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYG 591

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
              ++   N+LV+MYAKCGS+ +A   F ++  + +VSW++MI      G G  A+ LF+
Sbjct: 592 FVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFN 651

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           +ML  G+ P+ I  VSVL AC+HAGL+ E + YF+ M E +   P  EH+AC++DLLGRA
Sbjct: 652 QMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRA 711

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           GK+ EA +L+ +MP E N  +WG+L+ A  ++ ++++G  AA+ +F L P +SG +VLL+
Sbjct: 712 GKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLA 771

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           NIYA AG+W +V  VR+ M    +KK PG S +E+ D+V    +  RS
Sbjct: 772 NIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRS 819



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 227/446 (50%), Gaps = 35/446 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++  K++H  ++++     +  +   L+  Y  C + +D++ +FDEI  +NVV +N L 
Sbjct: 172 DLRIGKQVHGVVVVSG-FEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALF 230

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             YV      +A+ ++  M + G  P+ ++   ++ AC+G      G  IH  ++K+G D
Sbjct: 231 SCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYD 290

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
           ++ F+ N LV MY K G L +A  V   +   D+V+WN+++AG   +   ++AL++  +M
Sbjct: 291 WDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM 350

Query: 223 ESLRIKPDADTMASLL----------------PSVTNTSPENVLSVK----EMFLKLD-- 260
           +   I P+  T++S L                 S+     E+ L V     +M+ K D  
Sbjct: 351 KRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLL 410

Query: 261 -----------NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                       K+L++WN +I+ Y+      EA+ L+++M   GI  N  +++++L + 
Sbjct: 411 EDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKST 470

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L  + + R++H    +     ++ + N+L+D Y KC  + +A  +F++    D+VS+T
Sbjct: 471 AGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFT 530

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           SMI+AY   GQG +A+ LF +M    L PD     S+L+AC++    E+G+    +   +
Sbjct: 531 SMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGK-QLHVHILK 589

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEA 455
           Y  V  I     LV++  + G +++A
Sbjct: 590 YGFVLDIFAGNSLVNMYAKCGSIDDA 615



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 146/560 (26%), Positives = 252/560 (45%), Gaps = 84/560 (15%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           ++HA I     L  +PSI   L+  Y  C      R + DE +  ++V ++ LI  Y  N
Sbjct: 77  QIHAHIT-KSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQN 135

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
            L   AL  +  M + G   + +T+  VLKACS    L +G Q+H  VV  G + ++F  
Sbjct: 136 GLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVA 195

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           N LV MY KC    +++R+ +++P ++VV+WN++ + Y Q     EA+ +  EM    IK
Sbjct: 196 NTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIK 255

Query: 229 PDADTMASLLPSVT--------------------NTSPENVLSVKEM------------- 255
           P+  +++S++ + T                    +  P +  ++ +M             
Sbjct: 256 PNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISV 315

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F K+   ++VSWN +IA    +    +A++L  QM+  GI PN  +++S L AC  +   
Sbjct: 316 FEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLK 375

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
            LGR++H  + +  ++ +L +   LVDMY+KC  L +AR  F+ +  +D+++W ++IS Y
Sbjct: 376 ELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGY 435

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL-----------------LEE 418
               +  +A++LF +M   G+  +     ++L   S AGL                    
Sbjct: 436 SQYWEDMEALSLFVEMHKEGIGFNQTTLSTILK--STAGLQVVHVCRQVHGLSVKSGFHS 493

Query: 419 GRYYFKIMTEQYKLVPRIE---------------HFACLVDLLGRAGKVEEAYDL---IK 460
             Y    + + Y     +E                F  ++    + G+ EEA  L   ++
Sbjct: 494 DIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQ 553

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL-------LSNIYA 513
            M ++P+  +  SL+ AC   S  + G     HI          +VL       L N+YA
Sbjct: 554 DMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYG------FVLDIFAGNSLVNMYA 607

Query: 514 KAGRWGDVKRVRKFMNSKGI 533
           K G   D  R    +  +GI
Sbjct: 608 KCGSIDDAGRAFSELTERGI 627



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 191/391 (48%), Gaps = 39/391 (9%)

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           F P   +Y  +L  C  + SL  GLQIH  + K GL  +    N L+ +Y KC     AR
Sbjct: 52  FTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYAR 111

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS----- 240
           +++++    D+V+W+++++GYAQNG    AL    EM  L +K +  T +S+L +     
Sbjct: 112 KLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVK 171

Query: 241 ----------------------VTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIA 272
                                 V NT        +  L  K +F ++  +N+VSWN + +
Sbjct: 172 DLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFS 231

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y       EAV L+ +M + GI+PN  S++S++ AC  L     G+ IH Y+ +     
Sbjct: 232 CYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDW 291

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           +    NALVDMYAK G L +A +VF++++  D+VSW ++I+   +      A+ L  +M 
Sbjct: 292 DPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK 351

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC--LVDLLGRAG 450
            SG+CP+     S L AC+  GL E GR   ++ +   K+    + F    LVD+  +  
Sbjct: 352 RSGICPNIFTLSSALKACAGMGLKELGR---QLHSSLMKMDMESDLFVSVGLVDMYSKCD 408

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
            +E+A      +P E +   W ++++    Y
Sbjct: 409 LLEDARMAFNLLP-EKDLIAWNAIISGYSQY 438



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 165/362 (45%), Gaps = 36/362 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LH+ ++    + S+  + + L+  Y  C  + D R  F+ +  K+++ +N +I  Y  
Sbjct: 379 RQLHSSLM-KMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQ 437

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
            +   +AL ++  M   G   +  T   +LK+ +G   + V  Q+H   VK G   +++ 
Sbjct: 438 YWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYV 497

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+  YGKC  +++A R+  +    D+V++ SM+  YAQ G+ +EAL +  EM+ + +
Sbjct: 498 VNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMEL 557

Query: 228 KPDADTMASLLPSVTNTSP---------------------------------ENVLSVKE 254
           KPD    +SLL +  N S                                   ++     
Sbjct: 558 KPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGR 617

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
            F +L  + +VSW+ MI   A +    +A+ L+ QM   G+ PN I++ SVL AC     
Sbjct: 618 AFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGL 677

Query: 315 LLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTSMI 372
           +   +     +E     +P       ++D+  + G + EA  + ++M  +   S W +++
Sbjct: 678 VTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALL 737

Query: 373 SA 374
            A
Sbjct: 738 GA 739



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 149/324 (45%), Gaps = 14/324 (4%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +   +++H  + +    HS+  +   L+ +YG C  + D   +F+E T  ++V F  +I 
Sbjct: 476 VHVCRQVHG-LSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMIT 534

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           +Y       +AL ++  M      PD +    +L AC+  ++   G Q+H  ++K G   
Sbjct: 535 AYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVL 594

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           ++F GN LV MY KCG + +A R  +++  + +V+W++M+ G AQ+G   +AL +  +M 
Sbjct: 595 DIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQML 654

Query: 224 SLRIKPDADTMASLLPSVTNTS--PENVLSVKEMFLKLDNKNLVS-WNVMIAVYANNSMP 280
              + P+  T+ S+L +  +     E  L  + M      K +   +  MI +       
Sbjct: 655 KEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKI 714

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY---VERKKLQPNLRLE 337
            EAV+L  +M     E NA    ++L A      + LGR+       +E +K   ++ L 
Sbjct: 715 NEAVELVNKMP---FEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLA 771

Query: 338 NALVDMYAKCGSLTEARTVFDQMR 361
           N    +YA  G       V   MR
Sbjct: 772 N----IYASAGKWENVAEVRRLMR 791


>gi|357472867|ref|XP_003606718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507773|gb|AES88915.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 182/535 (34%), Positives = 308/535 (57%), Gaps = 13/535 (2%)

Query: 16  PVQALVLSTQYTLLSGDACNDILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLKLMR 72
           P +  + +  +     ++   +++ Y   ++L   KKLHA +  N ++  N  I   L+ 
Sbjct: 14  PTKNAIFNHHFLRSEPESYAKLIETYTHSRSLQQGKKLHALLTTNGYVRFNL-IASNLIT 72

Query: 73  TYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD--C 130
            Y  CGQ+   R +FD+I   N+  +  LI +      +  AL V+  M           
Sbjct: 73  LYTTCGQLSIARKLFDKIPQTNIHRWIALIATCARCGFHDHALEVFSEMQTLNDQKSNSV 132

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
           +  P VLKAC      + G Q+HC V+K   + + F  + L+ MY KCG +++AR+V + 
Sbjct: 133 FVIPSVLKACGHVGDRIYGEQVHCLVLKCSFEIDAFVSSALIVMYSKCGEVRDARKVFDG 192

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL 250
           M  KD+V  N++V+GYAQ G  +EAL +   M+ + + P+  T  +L+          ++
Sbjct: 193 MVVKDLVAMNAVVSGYAQQGLPNEALSLVENMKLMGVNPNVVTWNALISGFAQKCDREMV 252

Query: 251 SVKEMFLKLDNK----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
           S  E+F  ++      ++VSW  +++ +  N    EA D + +M + G  P + +++++L
Sbjct: 253 S--EIFRLMNEDRVEPDVVSWTSVLSGFVQNFRNEEAFDAFKKMLLLGFCPTSATISALL 310

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
           PAC   + +  G++IH Y     ++ +L + +ALVDMYAKCG ++EART+F +M  ++ V
Sbjct: 311 PACATEARVRFGKEIHGYALVIGVEDDLYVRSALVDMYAKCGFISEARTLFYKMPEKNTV 370

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKI 425
           +  SMI  Y   G   +A+ LF++M M G+   D + F + L+ACSH G +E G+  FKI
Sbjct: 371 TMNSMIFGYANHGCCEEAIELFNQMEMEGVPKLDHLTFTAALTACSHVGDIELGQRLFKI 430

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M E+Y + PR+EH+AC+VDL GRAGK+EEAY +IK MP++P+  +WG+L+AAC  + +++
Sbjct: 431 MQEKYCIEPRLEHYACMVDLFGRAGKLEEAYGIIKSMPVKPDLFVWGALLAACRNHGHVE 490

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           +  +AA H+  L P  +G  +LLS++YA AG WG V+R+++ +    ++K+ G S
Sbjct: 491 LAEVAAKHLSELEPESAGNRLLLSSLYADAGTWGKVERIKRRIKKGKLRKLQGLS 545


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 179/523 (34%), Positives = 299/523 (57%), Gaps = 36/523 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y     ++D R +FD++  ++ V +N +I  Y    LY +++ ++  M V+ F PD
Sbjct: 316 LLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPD 374

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   +L+AC     L  G  +H  ++  G + +    N L+ MY KCG L  ++ V +
Sbjct: 375 LLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFS 434

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
            M  KD V+WNSM+  Y QNG FDEA+ + + M++  +KPD+ T   LL           
Sbjct: 435 GMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKT-DVKPDSVTYVMLLSMSTQLGDLXL 493

Query: 241 ------------------VTNTSPENVLSVKEM------FLKLDNKNLVSWNVMIAVYAN 276
                             V+NT  +      EM      F  +  +++++WN +IA   +
Sbjct: 494 GKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVH 553

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           +      + +  +M   G+ P+  ++ S+LP C  L+A   G++IH  + +  L+ ++ +
Sbjct: 554 SEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPV 613

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            N L++MY+KCGSL  +  VF  M+ +DVV+WT++ISA GM G+G  AV  F +M  +G+
Sbjct: 614 GNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGI 673

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PD +AFV+++ ACSH+GL+EEG  YF  M + YK+ PRIEH+AC+VDLL R+  +++A 
Sbjct: 674 VPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAE 733

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           D I  MP++P+  IWG+L++AC +  + +I    ++ I  L P+ +GYYVL+SN+YA  G
Sbjct: 734 DFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALG 793

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRSSK 558
           +W  V+ +RK + ++G+KK PG S +E+ ++V +     + S+
Sbjct: 794 KWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSE 836



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 138/476 (28%), Positives = 244/476 (51%), Gaps = 39/476 (8%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT-NKNVVFFNVLIRSY 105
           L KLH+ +II   LH +     KL+  Y        +  VF   + + NV  +N +IR+ 
Sbjct: 91  LHKLHS-LIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRAL 149

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
            +N L+ +AL +Y         PD YT+P V+ AC+G     +   IH  V+ +G   +L
Sbjct: 150 THNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDL 209

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           + GN L+ MY +   L +AR+V  +MP +DVV+WNS+++GY  NG ++EAL++     +L
Sbjct: 210 YIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNL 269

Query: 226 RIKPDADTMASLLPSVTNTSP---------------------------------ENVLSV 252
            + PD+ TM+S+L +                                         ++  
Sbjct: 270 GVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDG 329

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           + +F K+  ++ VSWN MI  Y+   +  E++ L+++M V+  +P+ +++ S+L ACG L
Sbjct: 330 RRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHL 388

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
             L  G+ +H Y+     + +    N L++MYAKCG+L  ++ VF  M+C+D VSW SMI
Sbjct: 389 GDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMI 448

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           + Y  +G   +A+ LF KM+ + + PDS+ +V +LS  +  G L  G+     + +    
Sbjct: 449 NVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKM-GF 506

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
              I     LVD+  + G++ ++  + + M    +   W +++A+C    + ++G+
Sbjct: 507 NSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASCVHSEDCNLGL 561



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/487 (27%), Positives = 243/487 (49%), Gaps = 50/487 (10%)

Query: 32  DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
           +AC  +LD     +  K +H +++      S+  IG  L+  Y     +   R VF+E+ 
Sbjct: 182 NACAGLLD----FEMAKSIHDRVL-XMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMP 236

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
            ++VV +N LI  Y  N  + +AL +Y      G  PD YT   VL+AC G  S+  G  
Sbjct: 237 LRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDI 296

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           IH  + K+G+  ++   NGL++MY K   L + RR+ + M  +D V+WN+M+ GY+Q G 
Sbjct: 297 IHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGL 356

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSV----------------------TNTSPENV 249
           ++E++ +  EM + + KPD  T+ S+L +                        +T+  N+
Sbjct: 357 YEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNI 415

Query: 250 L-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
           L           + +E+F  +  K+ VSWN MI VY  N    EA+ L+  M+   ++P+
Sbjct: 416 LINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPD 474

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
           +++   +L     L  L LG+++H  + +     N+ + N LVDMYAKCG + ++  VF+
Sbjct: 475 SVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFE 534

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
            M+ +D+++W ++I++   S      + + S+M   G+ PD    +S+L  CS      +
Sbjct: 535 NMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQ 594

Query: 419 GRY----YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
           G+      FK+  E    V  +     L+++  + G +  ++ + K M  + +   W +L
Sbjct: 595 GKEIHGCIFKLGLESDVPVGNV-----LIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTAL 648

Query: 475 VAACCLY 481
           ++AC +Y
Sbjct: 649 ISACGMY 655



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 166/353 (47%), Gaps = 25/353 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   K+LH  +      +SN  +   L+  Y  CG+M D+  VF+ +  ++++ +N +I
Sbjct: 490 DLXLGKELHCDLA-KMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTII 548

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            S V++      L +   M   G  PD  T   +L  CS   +   G +IH  + K+GL+
Sbjct: 549 ASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLE 608

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++  GN L+ MY KCG L+ + +V   M +KDVVTW ++++     G   +A+    EM
Sbjct: 609 SDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEM 668

Query: 223 ESLRIKPDADTMASLLPSVTNTS--PENVLSVKEMFLKLDNK---NLVSWNVMIAVYANN 277
           E+  I PD     +++ + +++    E +     M  K D K    +  +  ++ + + +
Sbjct: 669 EAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRM--KKDYKIEPRIEHYACVVDLLSRS 726

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPAC---GDLSALLLGRKIHRYVERKKLQPNL 334
           ++  +A D  L M    ++P++    ++L AC   GD    +  R   R +E   L P+ 
Sbjct: 727 ALLDKAEDFILSMP---LKPDSSIWGALLSACRMSGDTE--IAQRVSERIIE---LNPDD 778

Query: 335 RLENALV-DMYAKCGSLTEARTVFDQMRCQDV-----VSWTSMISAYGMSGQG 381
                LV ++YA  G   + R++   ++ + +      SW  + +   + G G
Sbjct: 779 TGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTG 831


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 180/530 (33%), Positives = 292/530 (55%), Gaps = 67/530 (12%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VFD I    ++ +N + R +  +     AL +Y  M   G  P+ YT+P +LK+C+ S +
Sbjct: 59  VFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXA 118

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV------------------ 187
              G Q+H  V+K G D +L+    L++MY + G L++A++V                  
Sbjct: 119 FKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITG 178

Query: 188 -------------LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
                         +++P KDVV+WN+ ++GYA+ G + EAL++ ++M    ++PD  TM
Sbjct: 179 YASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTM 238

Query: 235 ASLLPSVTNTSP-----------------ENVLSVKEM----------------FLKLDN 261
            ++L +   +                    N+  V  +                F  L N
Sbjct: 239 VTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSN 298

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           K+++SWN +I  Y + ++  EA+ L+  M   G +PN +++ S+L AC  L A+ +GR I
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWI 358

Query: 322 HRYVER--KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
           H Y+++  K +     L  +L+DMYAKCG +  A+ VFD M  + + SW +MI  + M G
Sbjct: 359 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHG 418

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
           +   A  +FS+M  +G+ PD I FV +LSACSH+G+L+ GR+ F+ MT  YKL+P++EH+
Sbjct: 419 RANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHY 478

Query: 440 ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
            C++DL G +G  +EA  +I  M MEP+  IW SL+ AC ++ N+++G   A ++  + P
Sbjct: 479 GCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEP 538

Query: 500 NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
              G YVLLSNIYA A RW +V + R  +N KG+KK+PG +S+E++  V 
Sbjct: 539 ENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVH 588



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 171/365 (46%), Gaps = 37/365 (10%)

Query: 52  AQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLY 111
           AQ + ++  H +      L+  Y + G +     +FDEI  K+VV +N  I  Y     Y
Sbjct: 157 AQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNY 216

Query: 112 YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGL 171
            +AL ++K M      PD  T   VL AC+ S S+ +G Q+H  +   G   NL   N L
Sbjct: 217 KEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNAL 276

Query: 172 VAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA 231
           + +Y KCG L+ A  +   + +KDV++WN+++ GY     + EAL + ++M     KP+ 
Sbjct: 277 IDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPND 336

Query: 232 DTMASLLPS-----------------------VTNTSP------------ENVLSVKEMF 256
            TM S+L +                       VTN S              ++ + +++F
Sbjct: 337 VTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVF 396

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
             + N++L SWN MI  +A +     A D++ +M  +GIEP+ I+   +L AC     L 
Sbjct: 397 DSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLD 456

Query: 317 LGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
           LGR I R + R  KL P L     ++D+    G   EA  + + M  + D V W S++ A
Sbjct: 457 LGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKA 516

Query: 375 YGMSG 379
             M G
Sbjct: 517 CKMHG 521



 Score = 39.7 bits (91), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 38/71 (53%)

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           L  A +VFD ++   ++ W +M   + +S     A+ L+  M+  GL P+S  F  +L +
Sbjct: 53  LPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKS 112

Query: 410 CSHAGLLEEGR 420
           C+ +   +EG+
Sbjct: 113 CAKSXAFKEGQ 123


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 183/542 (33%), Positives = 300/542 (55%), Gaps = 41/542 (7%)

Query: 37  ILDKYPDIKTLK---KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
           +LD   D K L+   ++HAQ++ +  ++ +  +  K+M  +    +  D    + E  N 
Sbjct: 8   LLDSIKDCKNLRIFRQIHAQLVTSGLVYDD-FVTSKVMEFFANFVEYGDYACDYLEQGNT 66

Query: 94  NV--VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
            +    FN LI  YV       A+ VY+ M   GF PD +T+P +LKACS  +    G Q
Sbjct: 67  RLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQ 126

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H  VVK+GL  + +  N L+  YG CG    A +V ++M  +DVV+WNS+++G+ + G 
Sbjct: 127 VHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGH 186

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPS-------VTNTSPENVL-------------- 250
           FDEA+ V   M+   ++P   T+ S+L +        T      V+              
Sbjct: 187 FDEAISVFFRMD---VEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLGNAM 243

Query: 251 -----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                        K +F +L  +++VSW +MI     +  P ++++L+  M   GI P+A
Sbjct: 244 LDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDA 303

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           I + SVL AC  L  L  G  +H Y+ ++ ++ ++ +  A+VDMYAKCG +  A  +F  
Sbjct: 304 IILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYS 363

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
           M  ++  +W +++    M G  ++A+ LF  M++SG+ P+ I F+++L+AC H GL++EG
Sbjct: 364 MSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEG 423

Query: 420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
           R YF  M++ Y L+P++EH+ C++DL  RAG +EEA +L + MPM+P+  IWG L+ AC 
Sbjct: 424 RKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACT 483

Query: 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA 539
              N+++     D+I  L  + SG +VLLSNI A   RW +V R+R+ M  +G++K PG+
Sbjct: 484 TVGNIELSHRIQDYILELDHDDSGVFVLLSNISAINQRWSNVTRLRRLMKDRGVRKAPGS 543

Query: 540 SV 541
           SV
Sbjct: 544 SV 545


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 185/546 (33%), Positives = 301/546 (55%), Gaps = 39/546 (7%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           P ++  K++HA I+   H   + S+   L+ +Y  CG++     +FD + NKN++ +  L
Sbjct: 263 PFLEGGKQIHAHILRYGH-EKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTL 321

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           +  Y  N L+ +A+ ++ +M   G  PD +    +L +C+  ++L  G Q+H   +K  L
Sbjct: 322 LSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANL 381

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG---RFDEALDV 218
             + +  N L+ MY KC CL EAR+V +   + DVV +N+M+ GY++ G      +AL++
Sbjct: 382 GNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNI 441

Query: 219 CREMESLRIKPDADTMASLLPSVTNTSP------------------------------EN 248
             +M    I+P   T  SLL +  + +                                N
Sbjct: 442 FHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSN 501

Query: 249 VLSVKEMFLKLDN---KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
              +K+  L  D    K+LV WN M + Y   S   EA++L+L++++    P+  +   +
Sbjct: 502 CYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDM 561

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           + A G+L++L LG++ H  + ++ L+ N  + NAL+DMYAKCGS  +A   FD    +DV
Sbjct: 562 VTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDV 621

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           V W S+IS+Y   G+G  A+ +  KM+  G+ P+ I FV VLSACSHAGL+E+G   F++
Sbjct: 622 VCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFEL 681

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M  ++ + P  EH+ C+V LLGRAG++ EA +LI++MP +P   +W SL++ C    N++
Sbjct: 682 ML-RFGIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAAIVWRSLLSGCAKAGNVE 740

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMN 544
           +   AA+      P  SG + LLSNIYA  G W D K+VR+ M  +G+ K PG S +E+N
Sbjct: 741 LAEYAAEMAILSDPKDSGSFTLLSNIYASKGMWTDAKKVRERMKFEGVVKEPGRSWIEIN 800

Query: 545 DQVQII 550
            +V I 
Sbjct: 801 KEVHIF 806



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/402 (28%), Positives = 201/402 (50%), Gaps = 42/402 (10%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           +H QII++  L  +  +   LM  Y   G MV  R VF+++  +N+V ++ ++ +  ++ 
Sbjct: 66  VHGQIIVSG-LELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHG 124

Query: 110 LYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSG---SNSLLVGLQIHCSVVKVGLDYNL 165
            Y ++L V+ +        P+ Y     ++ACSG   S   +V  Q+   +VK   D ++
Sbjct: 125 FYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRWMV-FQLQSFLVKSRFDRDV 183

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           + G  L+  Y K G +  AR V + +P K  VTW +M++G  + GR   +L +  ++   
Sbjct: 184 YVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEG 243

Query: 226 RIKPDADTMASLLPSVT----------------------NTSPENVL-----------SV 252
            + PD   ++++L + +                      + S  NVL           + 
Sbjct: 244 NVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAA 303

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
            ++F  + NKN++SW  +++ Y  NS+  EA++L+  M   G++P+  + +S+L +C  L
Sbjct: 304 HKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASL 363

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
            AL  G ++H Y  +  L  +  + N+L+DMYAKC  LTEAR VFD     DVV + +MI
Sbjct: 364 HALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMI 423

Query: 373 SAY---GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
             Y   G   + +DA+ +F  M    + P  + FVS+L A +
Sbjct: 424 EGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASA 465



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 128/557 (22%), Positives = 254/557 (45%), Gaps = 84/557 (15%)

Query: 54  IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
            ++      +  +G  L+  Y   G +   R VFD +  K+ V +  +I   V     Y 
Sbjct: 173 FLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYV 232

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           +L ++  +      PD Y    VL ACS    L  G QIH  +++ G + +    N L+ 
Sbjct: 233 SLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLID 292

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
            Y KCG ++ A ++ + MP+K++++W ++++GY QN    EA+++   M    +KPD   
Sbjct: 293 SYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFA 352

Query: 234 MASLLPS---------------------------VTNT------SPENVLSVKEMFLKLD 260
            +S+L S                           VTN+        + +   +++F    
Sbjct: 353 CSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFA 412

Query: 261 NKNLVSWNVMIAVYANNSMPAE---AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
             ++V +N MI  Y+      E   A++++  M    I P+ ++  S+L A   L++L L
Sbjct: 413 ADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGL 472

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
            ++IH  + +  L  ++   +AL+ +Y+ C  L ++R VFD+M+ +D+V W SM S Y  
Sbjct: 473 SKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQ 532

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRI 436
             +  +A+ LF ++ +S   PD   FV +++A  +   L+ G+ ++ +++    +  P I
Sbjct: 533 QSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYI 592

Query: 437 EHFACLVDLLGRAGKVEEAY-------------------------------DLIKQM--- 462
            +   L+D+  + G  E+A+                                ++++M   
Sbjct: 593 TN--ALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCE 650

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHI--FHLAPNQSGYYVLLSNIYAKAGRWGD 520
            +EPN   +  +++AC     ++ G+   + +  F + P ++ +YV + ++  +AGR  +
Sbjct: 651 GIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEP-ETEHYVCMVSLLGRAGRLNE 709

Query: 521 VKRVRKFMNSKGIKKMP 537
            + +        I+KMP
Sbjct: 710 AREL--------IEKMP 718



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 144/304 (47%), Gaps = 36/304 (11%)

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H  ++  GL+ + +  N L+ +Y + G +  AR+V   MP +++VTW++MV+    +G 
Sbjct: 66  VHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGF 125

Query: 212 FDEAL----DVCR------------------------------EMESLRIKP--DADTMA 235
           ++E+L    D  R                              +++S  +K   D D   
Sbjct: 126 YEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRWMVFQLQSFLVKSRFDRDVYV 185

Query: 236 SLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
             L         N+   + +F  L  K+ V+W  MI+          ++ L+ Q+    +
Sbjct: 186 GTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNV 245

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
            P+   +++VL AC  L  L  G++IH ++ R   + +  L N L+D Y KCG +  A  
Sbjct: 246 VPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHK 305

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           +FD M  ++++SWT+++S Y  +    +A+ LF+ M   GL PD  A  S+L++C+    
Sbjct: 306 LFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHA 365

Query: 416 LEEG 419
           LE G
Sbjct: 366 LEFG 369



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 112/228 (49%), Gaps = 5/228 (2%)

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGD 311
           +++F K+  +NLV+W+ M++   ++    E++ ++L         PN   ++S + AC  
Sbjct: 99  RKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSG 158

Query: 312 L--SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
           L  S   +  ++  ++ + +   ++ +   L+D Y K G++  AR VFD +  +  V+WT
Sbjct: 159 LDGSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWT 218

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           +MIS     G+ Y ++ LF +++   + PD     +VLSACS    LE G+     +  +
Sbjct: 219 TMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHIL-R 277

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           Y           L+D   + G+V  A+ L   MP   N   W +L++ 
Sbjct: 278 YGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMP-NKNIISWTTLLSG 324



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 81/169 (47%), Gaps = 9/169 (5%)

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           LL    +H  +    L+ +  L N L+++Y++ G +  AR VF++M  +++V+W++M+SA
Sbjct: 60  LLYHNVVHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSA 119

Query: 375 YGMSGQGYDAVALFSKMLMSGL-CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
               G   +++ +F     +    P+     S + ACS  GL   GR+      + + + 
Sbjct: 120 CNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACS--GLDGSGRWMV-FQLQSFLVK 176

Query: 434 PRIEH----FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
            R +        L+D   + G ++ A  +   +P E +   W ++++ C
Sbjct: 177 SRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALP-EKSTVTWTTMISGC 224


>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1005

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 207/578 (35%), Positives = 318/578 (55%), Gaps = 48/578 (8%)

Query: 7   LCRHFSTTKPVQALVLSTQYTLLSG-DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPS 65
           L R    T P      S  YT++S   AC    + +   K  K++HA ++ + H      
Sbjct: 251 LFREMQMTGPA-----SNSYTIVSALTAC----EGFSYAKLGKEIHAAVLKSTH-SFEVY 300

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +   L+  Y  CG+M++   +   + N +VV +N LI+ YV N +Y +AL  + +M   G
Sbjct: 301 VCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQFFCDMIAAG 360

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             PD  +   V+ A    ++LL G+++H  V+K G D NL  GN L+ MY KC       
Sbjct: 361 HKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKCNLTCYMG 420

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           R    M  KD+++W +++AGYA N    EAL + R++   R++ D   + S+L + +   
Sbjct: 421 RAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGSILRACSVL- 479

Query: 246 PENVLSVKEM----------------------------------FLKLDNKNLVSWNVMI 271
            +++L VKE+                                  F  +  K++VSW  MI
Sbjct: 480 -KSMLIVKEIHCHILRKGLIDTVIQNELVDVYGKCRNMGYASRVFESIKGKDVVSWTSMI 538

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           +  A N    EAV+L+ +M   G+  +++++  +L A   LSAL  GR+IH Y+ RK   
Sbjct: 539 SSSALNGNENEAVELFRRMAETGLLADSVALLCILSAAASLSALKKGREIHGYLLRKGFC 598

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
               +  A+VDMYA CG L  A+ VFD++  + ++ +TSMI+AYGM G G  +V LF+KM
Sbjct: 599 LEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKASVELFNKM 658

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
               + PD I+F+++L ACSHAGLL+EGR + KIM  +YKL P  EH+ CLVD+LGRA  
Sbjct: 659 RHENVSPDHISFLALLYACSHAGLLDEGRRFLKIMELEYKLEPWPEHYVCLVDMLGRANC 718

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
           V EA++ +K M  EP   +W +L+AAC  +S  +IG +AA  +  L P   G  VL+SN+
Sbjct: 719 VVEAFEFVKMMKTEPTTEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNV 778

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           +A+ GRW DV++VR  M + G++K PG S +EM+ +V 
Sbjct: 779 FAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVH 816



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 147/503 (29%), Positives = 249/503 (49%), Gaps = 48/503 (9%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFF 98
           K  DI++  +LH  +++    +S   I   L+  Y     +   + +FD    K + V +
Sbjct: 174 KLRDIRSGTELHC-MLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLW 232

Query: 99  NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
           N ++ SY  +    + L +++ M + G   + YT    L AC G +   +G +IH +V+K
Sbjct: 233 NSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLK 292

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
               + ++  N L+AMY +CG + EA R+L  M + DVVTWNS++ GY QN  + EAL  
Sbjct: 293 STHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQF 352

Query: 219 CREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM----------------------- 255
             +M +   KPD  ++ S++ +    S  N+L+  E+                       
Sbjct: 353 FCDMIAAGHKPDEVSLTSVIAASGRLS--NLLAGMELHAYVIKHGWDSNLLVGNTLIDMY 410

Query: 256 ------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
                       FL +  K+L+SW  +IA YA N    EA+ L+  +    +E + + + 
Sbjct: 411 SKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLG 470

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           S+L AC  L ++L+ ++IH ++ RK L   + ++N LVD+Y KC ++  A  VF+ ++ +
Sbjct: 471 SILRACSVLKSMLIVKEIHCHILRKGLIDTV-IQNELVDVYGKCRNMGYASRVFESIKGK 529

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR--- 420
           DVVSWTSMIS+  ++G   +AV LF +M  +GL  DS+A + +LSA +    L++GR   
Sbjct: 530 DVVSWTSMISSSALNGNENEAVELFRRMAETGLLADSVALLCILSAAASLSALKKGREIH 589

Query: 421 -YYFK--IMTEQYKLVPRIEHFACLVDLLGRAGKVE--EAYDLIKQMPMEPNERIWGSLV 475
            Y  +     E    V  ++ +AC  DL       +  E   L++   M     + G   
Sbjct: 590 GYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGK 649

Query: 476 AACCLYSNMDIGILAADHIFHLA 498
           A+  L++ M    ++ DHI  LA
Sbjct: 650 ASVELFNKMRHENVSPDHISFLA 672



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 182/371 (49%), Gaps = 36/371 (9%)

Query: 77  CGQ--MVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYP 134
           CG+   +    VFDE+ ++    +N LI +YV+N     AL +Y+NM V G   D Y++P
Sbjct: 107 CGKSRALSQEKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFP 166

Query: 135 CVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK 194
            +LKAC     +  G ++HC +VK+G +   F  N LV+MY K   L  A+R+ +    K
Sbjct: 167 VLLKACGKLRDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEK 226

Query: 195 -DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV---- 249
            D V WNS+++ Y+ +G+  E L + REM+      ++ T+ S L +    S   +    
Sbjct: 227 GDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEI 286

Query: 250 -----------------------------LSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                                        L    +   ++N ++V+WN +I  Y  N M 
Sbjct: 287 HAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMY 346

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            EA+  +  M   G +P+ +S+ SV+ A G LS LL G ++H YV +     NL + N L
Sbjct: 347 KEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTL 406

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +DMY+KC         F  M  +D++SWT++I+ Y ++    +A+ LF  +    +  D 
Sbjct: 407 IDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDE 466

Query: 401 IAFVSVLSACS 411
           +   S+L ACS
Sbjct: 467 MMLGSILRACS 477



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 15/233 (6%)

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
           LS +++F ++ ++   +WN +I  Y +N  PA A+ +Y  M V G+  +  S   +L AC
Sbjct: 113 LSQEKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFPVLLKAC 172

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSW 368
           G L  +  G ++H  + +        + NALV MYAK   L+ A+ +FD  + + D V W
Sbjct: 173 GKLRDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLW 232

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            S++S+Y  SG+  + + LF +M M+G   +S   VS L+AC       EG  Y K+  E
Sbjct: 233 NSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTAC-------EGFSYAKLGKE 285

Query: 429 QYKLVPRIEH----FAC--LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
            +  V +  H    + C  L+ +  R GK+ EA  +++ M    +   W SL+
Sbjct: 286 IHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMN-NADVVTWNSLI 337


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 192/533 (36%), Positives = 289/533 (54%), Gaps = 68/533 (12%)

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
           R V D+  +     +N LIR+Y  +    ++L +Y  M      P  +T+P VLKACS  
Sbjct: 47  RFVLDQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTL 106

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
            S+L G QIH  V+++G   +LF  N L+ MY KC  L  AR   +DM  +D V+WNS++
Sbjct: 107 GSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSII 166

Query: 204 AGYAQNGRFDEALDVCREMESLR----------------------------------IKP 229
           +GY Q G+ ++A D+  EM   R                                  ++P
Sbjct: 167 SGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQP 226

Query: 230 DADTMASLLPSVT-----------------NTSPENVLSVK----------------EMF 256
           +A TM  LL + +                 N  P N + V                  +F
Sbjct: 227 NAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIF 286

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
             +  KNL SWN +I       +  EA+DLY  M+   ++PN I++ +VL AC  L AL 
Sbjct: 287 DGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALE 346

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
           LGR++H Y+ R  L  N+ L  ALVDMYAKCG + +A  +F +   +DV  W +MI    
Sbjct: 347 LGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLA 406

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
             G G D++A+FS+M+ +G+ P+ + F+ VLSAC+H+GL+EEGR  F  M +++ L P++
Sbjct: 407 YHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKL 466

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           EH+AC+VDLLGRAG ++EAY+L++ M + P+  IWG+L++AC ++ N+++    ++ I  
Sbjct: 467 EHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMA 526

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
                 G+ +LLSNIYA +GRW DV RVR+ +  K IKK  G S VE++  V 
Sbjct: 527 SQDPNIGFCILLSNIYASSGRWKDVARVRRQVKEKRIKKPSGCSWVEVDGVVH 579



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 138/297 (46%), Gaps = 11/297 (3%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  CG +     +FD ++ KN+  +N +I   V   L  +A+ +Y++M      P+
Sbjct: 269 LIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPN 328

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   VL AC+G  +L +G ++H  + + GLD N+     LV MY KCG + +A  +  
Sbjct: 329 EITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFV 388

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
               KDV  WN+M+ G A +G   ++L V  +M    ++P+  T   +L +  ++    V
Sbjct: 389 KTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGL--V 446

Query: 250 LSVKEMFLKLDNKNLVS-----WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
              +  F  + +K+ +S     +  M+ +        EA +L   M    I P++I   +
Sbjct: 447 EEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNML---IPPDSIIWGA 503

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           +L AC     L L  KI   +   +  PN+     L ++YA  G   +   V  Q++
Sbjct: 504 LLSACRIHRNLELADKISETIMASQ-DPNIGFCILLSNIYASSGRWKDVARVRRQVK 559



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 94/233 (40%), Gaps = 53/233 (22%)

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
           +IH+ +  + L   L L+  L+       S+  AR V DQ       SW S+I AY + G
Sbjct: 14  QIHQ-IHAQTLIHGLPLQTHLIPKLIDLHSIDYARFVLDQTPSPTDFSWNSLIRAYTVHG 72

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
              +++ L+ KML S   P +  F  VL ACS  G + EG    +I T   +L    + F
Sbjct: 73  SPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGE---QIHTHVLRLGFGSDLF 129

Query: 440 AC--LVDLLGRA-------------------------------GKVEEAYDLIKQMPMEP 466
            C  L+D+  +                                G+VE+A DL ++MPM  
Sbjct: 130 VCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRR 189

Query: 467 NERIW----------GSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           N   W          G  V    L+  M   +++AD +    PN +    LLS
Sbjct: 190 NVVCWTAMINGYGKEGDFVEMLSLFRQM---LVSADEV---QPNAATMVCLLS 236


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 190/542 (35%), Positives = 298/542 (54%), Gaps = 78/542 (14%)

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           K+VV +  L+  Y  N + Y ++ V++NM   G  PD      +L A S        L +
Sbjct: 301 KDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCL 360

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR- 211
           H  VV+ G + N+F G  L+ +Y KCG L +A ++   M  +DVV W+SM+A Y  +GR 
Sbjct: 361 HGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRG 420

Query: 212 ------FDEALDVCREMES---LRIKPDAD--------TMASLLP--------------- 239
                 FD+ + V + + S   + ++P           T+A+ +P               
Sbjct: 421 GEALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCTLATHIPWKVKAFYMRAHFRWL 480

Query: 240 ------------SVTNTSPENVLS---------------VKEMFLKLDNKNLVS------ 266
                          + S  N+ +               +   F ++D  ++V       
Sbjct: 481 GHFWEIFPTYPFQAADMSKSNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNP 540

Query: 267 ----WNVMIAVYANNSMPAEAVDLYLQMEVHGIEP-------NAISVASVLPACGDLSAL 315
               WNVMI  +A +     +++LY +M   G++P       N +S+ SVL ACG+L AL
Sbjct: 541 CSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGAL 600

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             G   H YV +   + ++ +  A++DMY+KCGSL  AR +FD+   +D+V W++MI++Y
Sbjct: 601 RKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASY 660

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
           G+ G G  A+ LF +M+ +G+ P  + F  VLSACSH+GLLEEG+ YF++MTE++ +  +
Sbjct: 661 GIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARK 720

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
           + ++AC+VDLLGRAG++ EA DLI+ MP+EP+  IWGSL+ AC +++N+D+    ADH+F
Sbjct: 721 LSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLF 780

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPL 554
           HL P  +GY+VLLSNIYA   RW +V++VRK M  +G  K+ G S VE ++QV    +  
Sbjct: 781 HLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGD 840

Query: 555 RS 556
           RS
Sbjct: 841 RS 842



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 135/447 (30%), Positives = 210/447 (46%), Gaps = 47/447 (10%)

Query: 36  DILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNV 95
           D+     + +++ +LH+Q+     LH +     KL   Y  C  +   R VFDE  + NV
Sbjct: 9   DLFQACNNGRSVSQLHSQVFKTGILH-DTFFATKLNSLYAKCASLQAARKVFDETPHPNV 67

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
             +N  +RSY     + + L ++  M    G  PD +T P  LKAC+G   L +G  IH 
Sbjct: 68  HLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHG 127

Query: 155 SVVK---VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
              K   +G D  +F G+ LV +Y KCG + EA +V  +    D V W SMV GY QN  
Sbjct: 128 FAKKNDEIGSD--MFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNND 185

Query: 212 FDEALDVCREMESLR-IKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVM 270
            +EAL +  +M  +     D   + SLL     T  E + +   +F K+  K+++SW+ M
Sbjct: 186 PEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAA--NLFSKMPEKDVISWSTM 243

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
           IA YANN    EA++L+ +M     EPN+++V S L AC     L  G+KIH+    K  
Sbjct: 244 IACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWK-- 301

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
                                            DVVSW +++S Y  +G  Y ++ +F  
Sbjct: 302 ---------------------------------DVVSWVALLSGYAQNGMAYKSMGVFRN 328

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450
           ML  G+ PD++A V +L+A S  G+ ++       +         +   A L++L  + G
Sbjct: 329 MLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRS-GFNSNVFVGASLIELYSKCG 387

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAA 477
            + +A  L K M +  +  IW S++AA
Sbjct: 388 SLGDAVKLFKGMIVR-DVVIWSSMIAA 413



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 179/351 (50%), Gaps = 38/351 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +H     N  + S+  +G  L+  Y  CGQM +   VF+E    + V +  ++  Y  
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    +AL ++  M +     DC+                              D +L  
Sbjct: 183 NNDPEEALALFSQMVMM----DCF------------------------------DGDLPL 208

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ +Y K GC K A  + + MP KDV++W++M+A YA N   +EAL++  EM   R 
Sbjct: 209 VNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRF 268

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
           +P++ T+ S L +   +   N+   K++      K++VSW  +++ YA N M  +++ ++
Sbjct: 269 EPNSVTVVSALQACAVS--RNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVF 326

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
             M   GI+P+A++V  +L A  +L        +H YV R     N+ +  +L+++Y+KC
Sbjct: 327 RNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKC 386

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML--MSGL 396
           GSL +A  +F  M  +DVV W+SMI+AYG+ G+G +A+ +F +M+  M G+
Sbjct: 387 GSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGI 437



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 106/468 (22%), Positives = 209/468 (44%), Gaps = 57/468 (12%)

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
           + +AC+   S+    Q+H  V K G+ ++ F    L ++Y KC  L+ AR+V ++ P  +
Sbjct: 10  LFQACNNGRSVS---QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPN 66

Query: 196 VVTWNSMVAGYAQNGRFDEALD-----VCREMESLRIKPDADTMASLLPSVTNTSPENVL 250
           V  WNS +  Y +  +++E L      +C   E+    PD  T+   L +        + 
Sbjct: 67  VHLWNSTLRSYCREKQWEETLRLFHLMICTAGEA----PDNFTIPIALKACAGLRMLELG 122

Query: 251 SVKEMFLKLDNK---NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
            V   F K +++   ++   + ++ +Y+      EA+ ++ + +     P+ +   S++ 
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQ----RPDTVLWTSMVT 178

Query: 308 ACGD----LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
                     AL L  ++   V       +L L N+L+++YAK G    A  +F +M  +
Sbjct: 179 GYQQNNDPEEALALFSQM---VMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEK 235

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           DV+SW++MI+ Y  +    +A+ LF +M+     P+S+  VS L AC+ +  LEEG+   
Sbjct: 236 DVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIH 295

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM---PMEPNERIWGSLVAACCL 480
           KI   +      +  +  L+    + G   ++  + + M    ++P+     ++     L
Sbjct: 296 KIAVWK-----DVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPD-----AVAVVKIL 345

Query: 481 YSNMDIGILAADHIFHLAPNQSGYY------VLLSNIYAKAGRWGDVKRVRKFM------ 528
            ++ ++GI       H    +SG+         L  +Y+K G  GD  ++ K M      
Sbjct: 346 AASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVV 405

Query: 529 ------NSKGIKKMPGASVEMNDQVQIIALPLRSSKCLTTGPKNVPPI 570
                  + GI    G ++E+ DQ+  +   + S   ++  P+  PP+
Sbjct: 406 IWSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSCYQISMQPQVQPPL 453



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 119/249 (47%), Gaps = 19/249 (7%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDC-------YTYPCVLK 138
           VF++I N     +NV+IR +  +  +  +L +Y  M   G  PD         +   VL 
Sbjct: 533 VFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLL 592

Query: 139 ACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVT 198
           AC    +L  G   H  V++ G ++++     ++ MY KCG L  AR + ++   KD+V 
Sbjct: 593 ACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVC 652

Query: 199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLK 258
           W++M+A Y  +G   +A+D+  +M    ++P   T   +L + +++    +L   +M+ +
Sbjct: 653 WSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHS---GLLEEGKMYFQ 709

Query: 259 LDNKNLV------SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           L  +  V      ++  M+ +       +EAVDL   M V   EP+A    S+L AC   
Sbjct: 710 LMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPV---EPDASIWGSLLGACRIH 766

Query: 313 SALLLGRKI 321
           + L L  KI
Sbjct: 767 NNLDLAEKI 775



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +   +M  Y  CG +   R +FDE   K++V ++ +I SY  +     A+ ++  M   G
Sbjct: 621 VATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAG 680

Query: 126 FDPDCYTYPCVLKACSGSNSLLVG-LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
             P   T+ CVL ACS S  L  G +       +  +   L N   +V + G+ G L EA
Sbjct: 681 VRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEA 740

Query: 185 RRVLNDMPSK-DVVTWNSMVAG 205
             ++ +MP + D   W S++  
Sbjct: 741 VDLIENMPVEPDASIWGSLLGA 762


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 191/574 (33%), Positives = 312/574 (54%), Gaps = 44/574 (7%)

Query: 9   RHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGL 68
           RH S+  P Q L    Q       +   IL K  D+K L+++HAQII +   H N  +  
Sbjct: 10  RHLSSN-PTQRLCPLAQ-------SHASILRKLKDLKPLQQIHAQIITSGLTH-NTFLSN 60

Query: 69  KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
            LM  Y  CG + D + +F     KNVV + +LI     N  + +A+ V++ M++  F P
Sbjct: 61  SLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKP 120

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           +  T   VL A +    + +   +HC  V+ G + N+F    LV MY K GC+  AR++ 
Sbjct: 121 NAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLF 180

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS-------- 240
             M  ++VV+WN++V+GY+ +G  +EA+D+   M    +  D  T+ SL+P+        
Sbjct: 181 ESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQ 240

Query: 241 --------VTNTSPENVLSVK-----------------EMFLKLDNKNLVSWNVMIAVYA 275
                   +  T  EN   +K                  +F ++  K++ +W +M+  ++
Sbjct: 241 VGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFS 300

Query: 276 NNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           +      A+  + +M  +  ++ ++I +  +L +C    AL  GR++H    +     N+
Sbjct: 301 SGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNI 360

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + +A++DMYA CG+L +A+  F  M  +DVV W +MI+  GM+G G DA+ LF +M  S
Sbjct: 361 FVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGS 420

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           GL PD   FVSVL ACSHAG++ EG   F  M +    +P ++H+AC++D+LGRAG+++ 
Sbjct: 421 GLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDA 480

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           AY  I  MP +P+  ++ +L+ AC ++ N+ +G   +  IF + PN +GYYVLLSN+YA 
Sbjct: 481 AYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYAL 540

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
           AG W  VK  R  + SK +KK PG +S+E+N ++
Sbjct: 541 AGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEI 574


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 171/460 (37%), Positives = 261/460 (56%), Gaps = 39/460 (8%)

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
           N  +V +N +I  YVN  LY +AL + + M   G + D +TYP V++AC+ +  L +G Q
Sbjct: 248 NMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQ 307

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H  V++   D++    N LV +Y KCG   EAR +   MP+KD+V+WN++++GY  +G 
Sbjct: 308 VHAYVLRRE-DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGH 366

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
             EA                                     K +F ++  KN++SW +MI
Sbjct: 367 IGEA-------------------------------------KLIFKEMKEKNILSWMIMI 389

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           +  A N    E + L+  M+  G EP   + +  + +C  L A   G++ H  + +    
Sbjct: 390 SGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFD 449

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            +L   NAL+ MYAKCG + EA+ VF  M C D VSW ++I+A G  G G +AV ++ +M
Sbjct: 450 SSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEM 509

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
           L  G+ PD I F++VL+ACSHAGL+++GR YF  M   Y++ P  +H+A L+DLL R+GK
Sbjct: 510 LKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGK 569

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
             EA  +I+ +P +P   IW +L++ C ++ NM++GI+AAD +F L P   G Y+LLSN+
Sbjct: 570 FSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNM 629

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           YA  G+W +V RVRK M  +G+KK    S +EM  QV   
Sbjct: 630 YAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTF 669



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 157/365 (43%), Gaps = 90/365 (24%)

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
            SL +   +H +++  G   +    N L+ +Y K   L  AR++ +++   D +   +MV
Sbjct: 28  TSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMV 87

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKN 263
           +GY  +G      D+                 +L  SV   +P ++            ++
Sbjct: 88  SGYCASG------DI-----------------ALARSVFEETPVSM------------RD 112

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK--- 320
            V +N MI  +++N+    A++L+ +M+  G +P+  + ASVL     L+ ++   K   
Sbjct: 113 TVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAG---LALVVDDEKQCV 169

Query: 321 -IHRYVERKKLQPNLRLENALVDMYAKCGS----LTEARTVFDQMRCQDVVSWTSMISAY 375
             H    +        + NALV +Y++C S    L  AR VFD +  +D  SWT+M++ Y
Sbjct: 170 QFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGY 229

Query: 376 GMSG-------------------------QGY-------DAVALFSKMLMSGLCPDSIAF 403
             +G                          GY       +A+ +  +M+ SG+  D   +
Sbjct: 230 VKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTY 289

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA-----CLVDLLGRAGKVEEAYDL 458
            SV+ AC++A LL+ G+       + +  V R E F+      LV L  + GK  EA  +
Sbjct: 290 PSVIRACANARLLQLGK-------QVHAYVLRREDFSFHFDNSLVTLYYKCGKFNEARAI 342

Query: 459 IKQMP 463
            ++MP
Sbjct: 343 FEKMP 347



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 85/220 (38%), Gaps = 54/220 (24%)

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
           ++L L R +H  +     QP+  + N L+D+Y K   L  AR +FD++   D ++ T+M+
Sbjct: 28  TSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMV 87

Query: 373 SAYGMSGQ---------------------------------GYDAVALFSKMLMSGLCPD 399
           S Y  SG                                  GY A+ LF KM   G  PD
Sbjct: 88  SGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPD 147

Query: 400 SIAFVSVLSACS------------HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
              + SVL+  +            HA  L+ G  Y  + +    LV      A    LL 
Sbjct: 148 DFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGY--VTSVSNALVSVYSRCASSPSLLH 205

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
            A KV   +D I     E +ER W +++         D+G
Sbjct: 206 SARKV---FDDIP----EKDERSWTTMMTGYVKNGCFDLG 238



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 112/257 (43%), Gaps = 21/257 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++ HAQ++      S+ S G  L+  Y  CG + + + VF  +   + V +N LI +   
Sbjct: 437 QQFHAQLV-KIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQ 495

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +    +A+ VY+ M   G  PD  T+  VL ACS +  +  G +   S+  V   Y +  
Sbjct: 496 HGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETV---YRIPP 552

Query: 168 GNG----LVAMYGKCGCLKEARRVLNDMPSKDVVT-WNSMVAGYAQNGRFDEALDVCREM 222
           G      L+ +  + G   EA  ++  +P K     W ++++G   +G  +  L +    
Sbjct: 553 GADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNME--LGIIAAD 610

Query: 223 ESLRIKPDADTMASLLPSVTNTSP--ENVLSVKEMFLKLDNKNLV--SW-----NVMIAV 273
           +   + P+ D    LL ++   +   E V  V+++      K  V  SW      V   +
Sbjct: 611 KLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFL 670

Query: 274 YANNSMP-AEAVDLYLQ 289
             + S P AEAV  YLQ
Sbjct: 671 VDDTSHPEAEAVYKYLQ 687


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 187/546 (34%), Positives = 300/546 (54%), Gaps = 39/546 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++   + H+ III + L  N  +G  L+  Y  CG + D R +F+ + +++ V +N +I
Sbjct: 443 DLEMGSQFHS-IIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTII 501

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            SYV +    +A  ++K M++ G   D       LKAC+  + L  G Q+HC  VK GLD
Sbjct: 502 GSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLD 561

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            +L  G+ L+ MY KCG +K+AR+V + +P   VV+ N+++AGY+QN   +EA+ + +EM
Sbjct: 562 RDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQN-NLEEAVVLFQEM 620

Query: 223 ESLRIKPDADTMASLLPSVTN-------------------TSPENVLSVK---------- 253
            +  + P   T A+++ +                      +S    L +           
Sbjct: 621 LTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRG 680

Query: 254 -----EMFLKLDN-KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                 +F +L + K++V W  M++ ++ N    EA+  Y +M   G+ P+  +  +VL 
Sbjct: 681 MTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLR 740

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVV 366
            C  LS+L  GR IH  +       +    N L+DMYAKCG +  +  VFD+MR + +VV
Sbjct: 741 VCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVV 800

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           SW S+I+ Y  +G   DA+ +F  M  S + PD I F+ VL+ACSHAG + +GR  F++M
Sbjct: 801 SWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMM 860

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
             QY +  R++H AC+VDLLGR G ++EA D I+   ++P+ R+W SL+ AC ++ +   
Sbjct: 861 IGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIR 920

Query: 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMND 545
           G ++A+ +  L P  S  YVLLSNIYA  G W     +RK M  +G+KK+PG S +++  
Sbjct: 921 GEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQ 980

Query: 546 QVQIIA 551
           +  I A
Sbjct: 981 RTHIFA 986



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 143/518 (27%), Positives = 250/518 (48%), Gaps = 45/518 (8%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           +HA+ I    L SN  +G  L+  Y  C +M     VF+ +  KN VF+N +IR Y +N 
Sbjct: 349 VHAEAI-KLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNG 407

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
             +  + ++ +M   G++ D +T+  +L  C+ S+ L +G Q H  ++K  L  NLF GN
Sbjct: 408 ESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGN 467

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            LV MY KCG L++AR++   M  +D VTWN+++  Y Q+    EA D+ + M    I  
Sbjct: 468 ALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVS 527

Query: 230 DADTMASLLPSVTNT------SPENVLSVK---------------------------EMF 256
           D   +AS L + T+          + LSVK                           ++F
Sbjct: 528 DGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVF 587

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
             L   ++VS N +IA Y+ N++  EAV L+ +M   G+ P+ I+ A+++ AC    +L 
Sbjct: 588 SSLPEWSVVSMNALIAGYSQNNLE-EAVVLFQEMLTRGVNPSEITFATIVEACHKPESLT 646

Query: 317 LGRKIHRYVERKKLQPNLR-LENALVDMYAKCGSLTEARTVFDQMRC-QDVVSWTSMISA 374
           LG + H  + ++        L  +L+ MY     +TEA  +F ++   + +V WT M+S 
Sbjct: 647 LGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSG 706

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
           +  +G   +A+  + +M   G+ PD   FV+VL  CS    L EGR    ++   + L  
Sbjct: 707 HSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLI---FHLAH 763

Query: 435 RIEHFA--CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL--YSNMDIGILA 490
            ++      L+D+  + G ++ +  +  +M    N   W SL+       Y+   + I  
Sbjct: 764 DLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFD 823

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
           +    H+ P++  +  +L+   + AG+  D +++ + M
Sbjct: 824 SMRQSHIMPDEITFLGVLTAC-SHAGKVSDGRKIFEMM 860



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 218/446 (48%), Gaps = 11/446 (2%)

Query: 37  ILDKYPD-----IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
           + D+ P      ++  K +H++ +I   + S   +G  ++  Y  C Q+      FD   
Sbjct: 64  VFDEMPQRLALALRIGKAVHSKSLI-LGIDSEGRLGNAIVDLYAKCAQVSYAEKQFD-FL 121

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
            K+V  +N ++  Y +       L  + ++  +   P+ +T+  VL  C+   ++  G Q
Sbjct: 122 EKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQ 181

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           IHCS++K+GL+ N + G  LV MY KC  + +ARRV   +   + V W  + +GY + G 
Sbjct: 182 IHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGL 241

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
            +EA+ V   M     +PD     +++ +        +   + +F ++ + ++V+WNVMI
Sbjct: 242 PEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLG--KLKDARLLFGEMSSPDVVAWNVMI 299

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           + +        A++ +  M    ++    ++ SVL A G ++ L LG  +H    +  L 
Sbjct: 300 SGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLA 359

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            N+ + ++LV MY+KC  +  A  VF+ +  ++ V W +MI  Y  +G+ +  + LF  M
Sbjct: 360 SNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDM 419

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
             SG   D   F S+LS C+ +  LE G  +  I+ ++ KL   +     LVD+  + G 
Sbjct: 420 KSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKK-KLAKNLFVGNALVDMYAKCGA 478

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAA 477
           +E+A  + ++M    N   W +++ +
Sbjct: 479 LEDARQIFERMCDRDN-VTWNTIIGS 503



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 161/342 (47%), Gaps = 37/342 (10%)

Query: 176 GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA 235
           G+C   K +R+V ++MP                  R   AL + + + S  +    D+  
Sbjct: 54  GQCKLFK-SRKVFDEMPQ-----------------RLALALRIGKAVHSKSLILGIDSEG 95

Query: 236 SLLPSVTNTSPENV-LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
            L  ++ +   +   +S  E       K++ +WN M+++Y++   P + +  ++ +  + 
Sbjct: 96  RLGNAIVDLYAKCAQVSYAEKQFDFLEKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQ 155

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
           I PN  + + VL  C   + +  GR+IH  + +  L+ N     ALVDMYAKC  +++AR
Sbjct: 156 IFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDAR 215

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            VF+ +   + V WT + S Y  +G   +AV +F +M   G  PD +AFV+V++     G
Sbjct: 216 RVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLG 275

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG----KVEEAYDLIKQMPMEPNERI 470
            L++ R  F  M+      P +  +  ++   G+ G     +E  +++ ++  ++     
Sbjct: 276 KLKDARLLFGEMSS-----PDVVAWNVMISGHGKRGCETVAIEYFFNM-RKSSVKSTRST 329

Query: 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
            GS+++A  + +N+D+G++       L         L SNIY
Sbjct: 330 LGSVLSAIGIVANLDLGLVVHAEAIKLG--------LASNIY 363


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 177/471 (37%), Positives = 266/471 (56%), Gaps = 37/471 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  CG +   R +FDE  NKN+V +N ++ +YV++    D L +   M   G  PD
Sbjct: 272 LVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPD 331

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T    + AC+    L VG   H  V++ GL+      N ++ MY KCG  + A +V  
Sbjct: 332 KVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFE 391

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            MP+K VVTWNS++AG  ++G  + A  +  EM                           
Sbjct: 392 HMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLE------------------------- 426

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                       ++LVSWN MI      SM  EA++L+ +M+  GI  + +++  +  AC
Sbjct: 427 ------------RDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASAC 474

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
           G L AL L + +  Y+E+  +  +L+L  ALVDM+++CG  + A  VF +M  +DV +WT
Sbjct: 475 GYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWT 534

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           + I    M G    A+ LF++ML   + PD + FV++L+ACSH G +++GR  F  M + 
Sbjct: 535 AAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKA 594

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           + + P I H+ C+VDLLGRAG +EEA DLI+ MP+EPN+ +WGSL+AAC  + N+++   
Sbjct: 595 HGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHY 654

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           AA+ +  LAP + G +VLLSNIYA AG+W DV RVR  M  KG++K+PG+S
Sbjct: 655 AAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSS 705



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 128/515 (24%), Positives = 237/515 (46%), Gaps = 72/515 (13%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGL-KLMRTYGACGQMVD---TRHVF--DEITNKNVVF 97
           +K LK+LH  ++    L   P+  L KL+ +    G +      R+ F  D+    ++  
Sbjct: 38  LKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFM 97

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +N LIR Y +  L   A+ +Y  M V G  PD YT+P +L ACS   +L  G+Q+H +V+
Sbjct: 98  YNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVL 157

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           K+GL+ ++F  N L+  Y +CG +   R++ + M  ++VV+W S++ GY+      EA+ 
Sbjct: 158 KMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVS 217

Query: 218 VCREMESLRIKPDADTMASLLPS----------------VTNTSPE-------------- 247
           +  +M    ++P+  TM  ++ +                ++    E              
Sbjct: 218 LFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYM 277

Query: 248 ---NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
              ++ + +++F +  NKNLV +N +++ Y ++   ++ + +  +M   G  P+ +++ S
Sbjct: 278 KCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLS 337

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC----------------- 347
            + AC  L  L +G+  H YV R  L+    + NA++DMY KC                 
Sbjct: 338 TIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKT 397

Query: 348 --------------GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
                         G +  A  +FD+M  +D+VSW +MI A        +A+ LF +M  
Sbjct: 398 VVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQN 457

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
            G+  D +  V + SAC + G L+  ++    + E+  +   ++    LVD+  R G   
Sbjct: 458 QGIPGDRVTMVGIASACGYLGALDLAKWVCTYI-EKNDIHVDLQLGTALVDMFSRCGDPS 516

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
            A  + K+M  + +   W + +    +  N +  I
Sbjct: 517 SAMHVFKRME-KRDVSAWTAAIGVMAMEGNTEGAI 550



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 140/309 (45%), Gaps = 17/309 (5%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G M     +FDE+  +++V +N +I + V   ++ +A+ +++ M   G   D  T   + 
Sbjct: 412 GDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIA 471

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
            AC    +L +   +   + K  +  +L  G  LV M+ +CG    A  V   M  +DV 
Sbjct: 472 SACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVS 531

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
            W + +   A  G  + A+++  EM   ++KPD     +LL + ++    +V   +++F 
Sbjct: 532 AWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGG--SVDQGRQLFW 589

Query: 258 KLDNK-----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
            ++       ++V +  M+ +     +  EAVDL   M    IEPN +   S+L AC   
Sbjct: 590 SMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMP---IEPNDVVWGSLLAACRKH 646

Query: 313 SALLLGRKIHRYVER-KKLQPN-LRLENALVDMYAKCGSLTEARTVFDQMRCQDV--VSW 368
             + L    H   E+  +L P  + +   L ++YA  G  T+   V  QM+ + V  V  
Sbjct: 647 KNVELA---HYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPG 703

Query: 369 TSMISAYGM 377
           +S I   G+
Sbjct: 704 SSSIEVQGL 712



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 2/161 (1%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           L K     I    +H +  +G  L+  +  CG      HVF  +  ++V  +   I    
Sbjct: 482 LAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMA 541

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV-GLDYNL 165
                  A+ ++  M      PD   +  +L ACS   S+  G Q+  S+ K  G+  ++
Sbjct: 542 MEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHI 601

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAG 205
            +   +V + G+ G L+EA  ++  MP   + V W S++A 
Sbjct: 602 VHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAA 642


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 185/524 (35%), Positives = 289/524 (55%), Gaps = 44/524 (8%)

Query: 74  YGACGQMVDTRHVFDEITNK-NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYT 132
           Y  C QM     +F + T++ NV  FN +I  ++ N    +    Y+ M   G  PD +T
Sbjct: 2   YSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFT 61

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           +PC +KAC     +L   +IH  + K GL+ ++F G+ LV  Y K G ++ A+    ++P
Sbjct: 62  FPCAIKACL---DVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELP 118

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP------------- 239
            +DVV WN+MV GYAQ G+F+  L+  R M    + P   T+  +L              
Sbjct: 119 IRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRI 178

Query: 240 --------------SVTNTSPENVLSVK------EMFLKLDNKNLVSWNVMIAVYANNSM 279
                         +V+N+  +     K      E+F  +  K++ SWN + +V+     
Sbjct: 179 IHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGD 238

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV------ERKKLQPN 333
               + L  +M   GI+P+ ++V +VLPAC  L+AL+ GR+IH Y+      +  K   +
Sbjct: 239 HDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDD 298

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
           + L+NA++DMYAKCGS+ +A  VF++M  +DV SW  MI  YGM G G +A+ +FS+M  
Sbjct: 299 VLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCE 358

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
             L PD + FV VLSACSHAG + +GR +   M  +Y + P IEH+ C++D+LGRAG+++
Sbjct: 359 VQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLD 418

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EAY+L   MP+E N  +W +L+AAC L+ +  +  +AA  +F L P   G YVL+SN+Y 
Sbjct: 419 EAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYG 478

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
             GR+ +V  VR  M  + ++K PG S +E+ + V +     R+
Sbjct: 479 AVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRA 522



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 173/383 (45%), Gaps = 49/383 (12%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC D+L+       +KK+H  ++    L  +  IG  L+  Y   G M   +  F+E+  
Sbjct: 68  ACLDVLE-------IKKIHG-LLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPI 119

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           ++VV +N ++  Y     +   L  ++ M+     P  +T   +L   +    L  G  I
Sbjct: 120 RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRII 179

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H   +K+G D  +   N L+ MYGKC C+++A  +   M  KD+ +WNS+ + + Q G  
Sbjct: 180 HGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDH 239

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSP-----------------------ENV 249
           D  L +   M    I+PD  T+ ++LP+ ++ +                        ++V
Sbjct: 240 DGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDV 299

Query: 250 L---SVKEM-------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
           L   +V +M             F ++ NK++ SWN+MI  Y  +    EA++++ +M   
Sbjct: 300 LLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEV 359

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTE 352
            ++P+ ++   VL AC     +  GR     ++ K  + P +     ++DM  + G L E
Sbjct: 360 QLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDE 419

Query: 353 ARTVFDQMRCQ-DVVSWTSMISA 374
           A  +   M  + + V W ++++A
Sbjct: 420 AYELALTMPIEANPVVWRALLAA 442



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 145/328 (44%), Gaps = 26/328 (7%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S  ++   L+  YG C  + D   +F+ +  K++  +N +   +     +   L +   M
Sbjct: 190 SGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRM 249

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN------LFNGNGLVAMY 175
              G  PD  T   VL ACS   +L+ G +IH  ++  GL  +      +   N ++ MY
Sbjct: 250 LGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMY 309

Query: 176 GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA 235
            KCG +++A  V   M +KDV +WN M+ GY  +G  +EAL++   M  +++KPD  T  
Sbjct: 310 AKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFV 369

Query: 236 SLLPSVTN----TSPENVLSVKEMFLKLD-NKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
            +L + ++    +   N L+  +M  K D    +  +  +I +        EA +L L M
Sbjct: 370 GVLSACSHAGFVSQGRNFLA--QMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTM 427

Query: 291 EVHGIEPNAISVASVLPACG-DLSALLLGRKIHRYVERKKLQPNLRLENALV-DMYAKCG 348
               IE N +   ++L AC     A+L      R  E   L+P       L+ ++Y   G
Sbjct: 428 P---IEANPVVWRALLAACRLHKHAVLAEVAAQRVFE---LEPEHCGSYVLMSNVYGAVG 481

Query: 349 SLTEARTVFDQMRCQDV-----VSWTSM 371
              E   V   MR Q+V      SW  +
Sbjct: 482 RYEEVLEVRHTMRQQNVRKTPGCSWIEL 509


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 196/622 (31%), Positives = 316/622 (50%), Gaps = 76/622 (12%)

Query: 4   VVLLCRHFSTTKPVQALV-LSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHS 62
           ++ +  + S+  P+   +  +T ++ +  +    IL++   +  LK++ AQ++    + +
Sbjct: 29  IISIFHNSSSLSPITKTINWNTTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIEN 88

Query: 63  NPSIGLKLMRTYGACG-----QMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHV 117
               G    R    C      ++     +   I   NV  +N  IR YV +        +
Sbjct: 89  ----GFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFML 144

Query: 118 YKNMSVHG-FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYG 176
           YK M + G   PD +TYP +LK C G  S  +GL +   V+K G + ++F  N  + M  
Sbjct: 145 YKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLL 204

Query: 177 KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS 236
            CG L  A  V N    +D+VTWNSM+ G  + G   EA+ + +EME+ +++P+  TM  
Sbjct: 205 SCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIG 264

Query: 237 LLPSVTNTSPEN---------------------------------VLSVKEMFLKLDNKN 263
           ++ S +     N                                 +L+ + +F  +  K 
Sbjct: 265 MISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKT 324

Query: 264 LVSWNVMIAVYA-------------------------------NNSMPAEAVDLYLQMEV 292
           LVSW  M+  YA                                     EA+ L+ +M++
Sbjct: 325 LVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQI 384

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
             IEP+ +++ + L AC  L AL +G  IH Y+ER KL  ++ L  ALVDMYAKCG++  
Sbjct: 385 RTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIAR 444

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           A  VF+++  ++ ++WT++I    + G   DA++ FSKM+  G+ PD I F+ VLSAC H
Sbjct: 445 ALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCH 504

Query: 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG 472
            GL+EEGR YF  M+ ++ + P+++H++C+VDLLGRAG +EEA +L+K MPM  +  + G
Sbjct: 505 GGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLG 564

Query: 473 SLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532
           +L  AC +Y N+ IG   A  +  + P  SG YVLL+++Y++A  W + +  RK MN KG
Sbjct: 565 ALFFACRVYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKG 624

Query: 533 IKKMPGAS-VEMNDQVQIIALP 553
           ++K PG S VE+N  V    LP
Sbjct: 625 VEKTPGCSLVEINGIVHEFVLP 646


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 188/533 (35%), Positives = 295/533 (55%), Gaps = 45/533 (8%)

Query: 23  STQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD 82
           ++ ++L S      +L K P +  +K++HAQ++ +  L  N S+   L+ +Y  C  +  
Sbjct: 47  TSSFSLPSHSTFVQLLKKRPSLTQIKQIHAQVVTHG-LAQNTSLLGPLIHSYIGCRNLSF 105

Query: 83  TRHVFDEITN-KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG--FDPDCYTYPCVLKA 139
            R VFD+  +    + +N++I++Y       ++L+++  M  HG     D YT+  V  A
Sbjct: 106 ARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTA 165

Query: 140 CSGSNSLL-VGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVT 198
           CS   +L   G  +H  VVK G + ++F GN LV MY     + +A+RV ++MP +DV+T
Sbjct: 166 CSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVIT 225

Query: 199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLK 258
           W S+V GYA  G    A                                     +E+F  
Sbjct: 226 WTSVVKGYAMRGELVRA-------------------------------------RELFDM 248

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLL 317
           +  +N VSW VM+A Y  +    EA+  +  M  H  ++PN   + S+L AC  L AL  
Sbjct: 249 MPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQ 308

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           G+ IH Y+++ ++  +  +  AL+DMYAKCG +  AR VFD +  +D+++WTSMIS   M
Sbjct: 309 GKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSM 368

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
            G G + +  FS+ML  G  PD I  + VL+ CSH+GL+EEG   F  M   + +VP++E
Sbjct: 369 HGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLE 428

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHL 497
           H+ CL+DLLGRAG++E A++ IK MPMEP+   W +L++AC ++ ++D+G    +HI  L
Sbjct: 429 HYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAEL 488

Query: 498 AP-NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            P +  G YVLLSN+YA  G+W  V +VRK M+ +G +  PG S +E++  V 
Sbjct: 489 CPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVH 541



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 96/201 (47%), Gaps = 13/201 (6%)

Query: 15  KPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTY 74
           KP +A+++S    +LS  A    LD+       K +H  I  N+ L S+ +I   L+  Y
Sbjct: 287 KPNEAVLVS----ILSACAHLGALDQG------KWIHVYIDKNRILLSS-NISTALIDMY 335

Query: 75  GACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYP 134
             CG++   R VFD +  ++++ +  +I     + L  + L  +  M   GF PD  T  
Sbjct: 336 AKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLL 395

Query: 135 CVLKACSGSNSLLVGLQIHCSVVKV-GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
            VL  CS S  +  GL I   ++ + G+   L +   L+ + G+ G L+ A   +  MP 
Sbjct: 396 GVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPM 455

Query: 194 K-DVVTWNSMVAGYAQNGRFD 213
           + DVV W ++++    +G  D
Sbjct: 456 EPDVVAWRALLSACRIHGDVD 476


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 178/529 (33%), Positives = 291/529 (55%), Gaps = 67/529 (12%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VF+ I   N + +N +IR +  +     +L +Y  M   G  P+ YT+P +LK+C+ S +
Sbjct: 20  VFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKT 79

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMY------------------------------ 175
              G QIH  V+K+G D +L+    L++MY                              
Sbjct: 80  FTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITG 139

Query: 176 -GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
               G ++ A+++ +++P KDVV+WN+M++GYA+ G + EAL++  EM  + ++PD  T 
Sbjct: 140 YASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTY 199

Query: 235 ASLLPSVTNTSP---------------------------------ENVLSVKEMFLKLDN 261
            ++L +  ++                                     V +   +F  L  
Sbjct: 200 VTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSY 259

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           K+++SWN +I  Y + ++  EA+ L+ +M   G  PN +++ SVLPAC  L A+ +GR I
Sbjct: 260 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWI 319

Query: 322 HRYVER--KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
           H Y+++  K +     L  +L+DMYAKCG +  A  VF+ M  + + SW +MI  + M G
Sbjct: 320 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHG 379

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
           +   +  LFS+M   G+ PD I FV +LSACSH+G+L+ GR+ F+ MT+ YK+ P++EH+
Sbjct: 380 RADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHY 439

Query: 440 ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
            C++DLLG +G  +EA ++I  M MEP+  IW SL+ AC ++ N+++    A ++  + P
Sbjct: 440 GCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEP 499

Query: 500 NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
                Y+LLSNIYA AGRW DV R+R  +N K +KK+PG +S+E++  V
Sbjct: 500 ENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVV 548



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 165/347 (47%), Gaps = 37/347 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y + G +   + +FDEI  K+VV +N +I  Y     Y +AL +++ M      PD
Sbjct: 136 LITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPD 195

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             TY  VL AC+ S S+ +G Q+H  V   G D NL   N L+ +Y KCG ++ A  +  
Sbjct: 196 ESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQ 255

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
            +  KDV++WN+++ GY     + EAL + +EM      P+  TM S+LP+         
Sbjct: 256 GLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDI 315

Query: 241 --------------VTNTSP------------ENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
                         VTN S              ++ +  ++F  + +K+L SWN MI  +
Sbjct: 316 GRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGF 375

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPN 333
           A +     + DL+ +M   GIEP+ I+   +L AC     L LGR I R + +  K+ P 
Sbjct: 376 AMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPK 435

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSG 379
           L     ++D+    G   EA  + + M  + D V W S++ A  M G
Sbjct: 436 LEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHG 482



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 135/272 (49%), Gaps = 11/272 (4%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           I+  +++H+ +  +    SN  I   L+  Y  CG++     +F  ++ K+V+ +N LI 
Sbjct: 212 IELGRQVHSWVD-DHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIG 270

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK--VGL 161
            Y +  LY +AL +++ M   G  P+  T   VL AC+   ++ +G  IH  + K   G+
Sbjct: 271 GYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGV 330

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
                    L+ MY KCG ++ A +V N M  K + +WN+M+ G+A +GR D + D+   
Sbjct: 331 TNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSR 390

Query: 222 MESLRIKPDADTMASLLPSVTNTS----PENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
           M  + I+PD  T   LL + +++       ++        K+  K L  +  MI +  ++
Sbjct: 391 MRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPK-LEHYGCMIDLLGHS 449

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            +  EA ++   ME   +EP+ +   S+L AC
Sbjct: 450 GLFKEAEEMINTME---MEPDGVIWCSLLKAC 478



 Score = 38.9 bits (89), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           L  A +VF+ ++  + + W +MI  + +S     ++ L+  M+  GL P+S  F  +L +
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQ 461
           C+ +    EG+   +I  +  KL   ++ +    L+ +  +  ++E+AY +  +
Sbjct: 74  CAKSKTFTEGQ---QIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDR 124


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 177/531 (33%), Positives = 295/531 (55%), Gaps = 65/531 (12%)

Query: 45  KTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           K  + +H  ++       N  +G +LM  YG  G+M D R VF+ +  ++ V +N ++  
Sbjct: 152 KLCRSVHGHVV-EMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSG 210

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA----------------------CSG 142
           Y  NY  + A  +++ M   G +P+  T+  +L +                       + 
Sbjct: 211 YALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGAT 270

Query: 143 SNSLLV-------------GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
           + +L V             G  IH  VVK G +  LF  N L+ +YGK G +  AR +  
Sbjct: 271 AEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFL 330

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
           ++ +K++V+WN++++ YA  G  DEA  +  ++E                  T+  P   
Sbjct: 331 EIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEK-----------------TDEYP--- 370

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                    +   N+VSW+ +I  +A+     EA++L+ +M++  ++ N++++ASVL  C
Sbjct: 371 ---------MVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVC 421

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
            +L+AL LGR+IH +V R  +  N+ + N L++MY K GS  E   VF+++  +D++SW 
Sbjct: 422 AELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWN 481

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           +M++ YG+ G G +A+  F +M+  G  PD + FV+VLSACSHAGL+ EGR  F  M ++
Sbjct: 482 TMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKE 541

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           +++ P++EH+AC+VDLLGRAG ++EA  ++K MP+EPN  +WG+L+ +C ++ N ++   
Sbjct: 542 FRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEE 601

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            A  IF+L    +G Y+LLSNIYA +GRW D  +VR    +KG+KK PG S
Sbjct: 602 TASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQS 652



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 212/449 (47%), Gaps = 85/449 (18%)

Query: 22  LSTQYTLLSGDACNDILDKYPDI-------KTLKKLHAQIIINQHLHSNPSIGLKLMRTY 74
           LS   +++     ND+LD + D+          +++H+QII+    H +  +  +++  Y
Sbjct: 18  LSRSISIIHHQPNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGS-HRSAFLAARVVSVY 76

Query: 75  GACGQMVDTRHVFDEITN----KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDC 130
              G + D + VF E++      N++ +N ++R+ V +    +AL +Y  M   G   D 
Sbjct: 77  AGFGLVSDAQRVF-EVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADG 135

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
           +T+P V++AC+   S  +   +H  VV++G  +NL  GN L+ MYGK G + +AR+V   
Sbjct: 136 FTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFER 195

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL 250
           M  +  V+WN+MV+GYA N     A ++ R M S  ++P                     
Sbjct: 196 MAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEP--------------------- 234

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
                       NLV+W  +++ +A      E ++L+ +M + GI   A ++A VL    
Sbjct: 235 ------------NLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSV 282

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           DL+A   G+ IH YV +   +  L ++N+L+ +Y K G++  AR +F +++ +++VSW +
Sbjct: 283 DLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNA 342

Query: 371 MISAY---------------------------------------GMSGQGYDAVALFSKM 391
           +IS+Y                                          GQG +A+ LF +M
Sbjct: 343 LISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 402

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
            ++ +  +S+   SVLS C+    L  GR
Sbjct: 403 QLAKVKANSVTIASVLSVCAELAALHLGR 431



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 125/271 (46%), Gaps = 26/271 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++H  ++    +  N  +G  L+  Y   G   +   VF++I NK+++ +N ++  Y  
Sbjct: 431 REIHGHVV-RSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGI 489

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYNLF 166
           + L  +A+  +  M   GF+PD  T+  VL ACS +  +  G ++   ++K   ++  + 
Sbjct: 490 HGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQME 549

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           +   +V + G+ G L+EA +V+  MP + +   W +++     + R  +  +V  E  S 
Sbjct: 550 HYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALL----NSCRMHKNTEVAEETASQ 605

Query: 226 RIKPDADTMAS--LLPSVTNTSPENVLSVKEMFLKLDNKNL-----VSW-NVMIAVY--- 274
               +++   S  LL ++   S     S K + +    K L      SW  V   VY   
Sbjct: 606 IFNLNSEIAGSYMLLSNIYAASGRWEDSAK-VRISAKTKGLKKTPGQSWIQVKKKVYMFS 664

Query: 275 ANNSMPAEAVDLY-------LQMEVHGIEPN 298
           A N+  AE  ++Y       LQMEV G  P+
Sbjct: 665 AGNTQHAELEEVYRILKDLGLQMEVEGYIPD 695


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 176/541 (32%), Positives = 294/541 (54%), Gaps = 36/541 (6%)

Query: 46  TLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           T  +LHA  +    L  +      L+  Y   G++ D    FDE+ +++V  +N ++   
Sbjct: 86  TAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGL 145

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
             N    +A+ ++  M + G   D  T   VL  C       + L +H   VK GLD  L
Sbjct: 146 CRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDEL 205

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           F  N ++ +YGK G L+E R+V + M S+D+VTWNS+++G+ Q G+   A+++   M   
Sbjct: 206 FVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDS 265

Query: 226 RIKPDADTMASLLPSVTNTSP----------------------------------ENVLS 251
            + PD  T+ SL  ++                                         + +
Sbjct: 266 GVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEA 325

Query: 252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVASVLPACG 310
            + MF  +  ++ VSWN +I  Y  N + +EA+ +Y  M+ H G++P   +  SVLPA  
Sbjct: 326 AQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYS 385

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
            L AL  G ++H    +  L  ++ +   ++D+YAKCG L EA  +F+Q   +    W +
Sbjct: 386 HLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNA 445

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           +IS  G+ G G  A++LFS+M   G+ PD + FVS+L+ACSHAGL+++GR +F +M   Y
Sbjct: 446 VISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAY 505

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            + P  +H+AC+VD+ GRAG++++A+D I+ MP++P+  IWG+L+ AC ++ N+++G +A
Sbjct: 506 GIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVA 565

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQI 549
           + ++F L P   GYYVL+SN+YAK G+W  V  VR  +  + ++K PG +S+E+   V +
Sbjct: 566 SQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNV 625

Query: 550 I 550
            
Sbjct: 626 F 626



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 202/415 (48%), Gaps = 57/415 (13%)

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGCLKEARRV 187
           D +T+P +L+A  G  +     Q+H   +++G L  + F    LV  Y + G +++A R 
Sbjct: 70  DAFTFPPLLRAAQGPGT---AAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRA 126

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP-------- 239
            ++M  +DV  WN+M++G  +N R  EA+ +   M    +  DA T++S+LP        
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDR 186

Query: 240 ---------SVTNTSPENVL----------------SVKEMFLKLDNKNLVSWNVMIAVY 274
                    +V +   + +                  V+++F  + +++LV+WN +I+ +
Sbjct: 187 ALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGH 246

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNA---ISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
                 A AV+++  M   G+ P+    +S+AS +  CGD+     GR +H Y+ R+   
Sbjct: 247 EQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICG---GRSVHCYMVRRGWD 303

Query: 332 -PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
             ++   NA+VDMYAK   +  A+ +FD M  +D VSW ++I+ Y  +G   +A+ ++  
Sbjct: 304 VGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDH 363

Query: 391 MLM-SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           M    GL P    FVSVL A SH G L++G      ++ +  L   +    C++DL  + 
Sbjct: 364 MQKHEGLKPIQGTFVSVLPAYSHLGALQQGT-RMHALSIKTGLNLDVYVGTCVIDLYAKC 422

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVA----------ACCLYSNMDIGILAADHI 494
           GK++EA  L +Q P       W ++++          A  L+S M    ++ DH+
Sbjct: 423 GKLDEAMLLFEQTPRRSTGP-WNAVISGVGVHGHGAKALSLFSQMQQEGISPDHV 476


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 180/507 (35%), Positives = 290/507 (57%), Gaps = 51/507 (10%)

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKN-MSVHGFDPDCYTYPCVLKACSGSNSLLVGL 150
           N N   +NV IR ++++    +A+ +YK  +   G  PD YTYP + KAC+  + + +G 
Sbjct: 40  NPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGS 99

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
           +I   V+ +G D ++F  N ++ +   CG L  AR++ +    +D+V+WNSM+ GY + G
Sbjct: 100 EILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRG 159

Query: 211 RFDEALDVCREMESLRIKPDADTMASLLPSVTN---------------------TSP--- 246
              EAL+  REM+   IKPD  TM  ++ S                        T P   
Sbjct: 160 WAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLAN 219

Query: 247 ---------ENVLSVKEMFLKLDNKNLVS----------------WNVMIAVYANNSMPA 281
                     N+ S +++F  + NK +VS                WN MI  Y + +   
Sbjct: 220 ALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGK 279

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
           EA+ L+ +M+   I P+ +++ S L AC  L AL +G  IH Y+E+ +L  N+ L  AL+
Sbjct: 280 EALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALI 339

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           DMYAKCG +T+A  VF ++  ++ ++WT++IS   + G  + A+A FS+M+ + + PD +
Sbjct: 340 DMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEV 399

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
            F+ +LSAC H GL+EEGR YF  M+ ++ L P+++H++C+VDLLGRAG +EEA +LIK 
Sbjct: 400 TFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKS 459

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
           MP+E +  +WG+L  AC ++ N+ +G  AA  +  + P+ SG YVLL+N+Y +A  W + 
Sbjct: 460 MPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEA 519

Query: 522 KRVRKFMNSKGIKKMPG-ASVEMNDQV 547
            + RK M  +G++K PG +S+E+N  V
Sbjct: 520 GKXRKLMRQRGVEKTPGCSSIEVNGIV 546



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 162/355 (45%), Gaps = 51/355 (14%)

Query: 76  ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC 135
           +CG +   R +FD+   +++V +N +I  YV     Y+AL+ Y+ M V G  PD  T   
Sbjct: 126 SCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIG 185

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR--------- 186
           V+ +C+    L +G + HC + + GL   +   N L+ MY KCG L+ AR+         
Sbjct: 186 VVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKT 245

Query: 187 -------VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
                  + ++MP KDVV WN+M+ GY    R  EAL +  EM+++ I PD  TM S L 
Sbjct: 246 MVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLS 305

Query: 240 SVTNTSPENV------------LSVK---------------------EMFLKLDNKNLVS 266
           + +     +V            LS+                      ++F +L  +N ++
Sbjct: 306 ACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLT 365

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           W  +I+  A +     A+  + +M  + + P+ ++   +L AC     +  GRK    + 
Sbjct: 366 WTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMS 425

Query: 327 RK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSG 379
            K  L P L+  + +VD+  + G L EA  +   M  + D V W ++  A  + G
Sbjct: 426 SKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHG 480



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 125/272 (45%), Gaps = 26/272 (9%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNK----------------NVVFFNVLIRSYVNNYLYYD 113
           LM  Y  CG +   R +FD +TNK                +VV +N +I  YV+     +
Sbjct: 221 LMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKE 280

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           AL ++  M     +PD  T    L ACS   +L VG+ IH  + K  L  N+  G  L+ 
Sbjct: 281 ALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALID 340

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MY KCG + +A +V  ++P ++ +TW ++++G A +G    A+    EM    + PD  T
Sbjct: 341 MYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVT 400

Query: 234 MASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLVSWNVMIAVYANNSMPAEAVDLYL 288
              LL +  +     V   ++ F ++ +K      L  ++ M+ +     +  EA +L  
Sbjct: 401 FLGLLSACCHGGL--VEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIK 458

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
            M    IE +A+   ++  AC     +L+G +
Sbjct: 459 SMP---IEADAVVWGALFFACRIHGNVLMGER 487



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 2/150 (1%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           I    L  N ++G  L+  Y  CG++     VF E+  +N + +  +I     +   + A
Sbjct: 323 IEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGA 382

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV-VKVGLDYNLFNGNGLVA 173
           +  +  M  +   PD  T+  +L AC     +  G +    +  K  L   L + + +V 
Sbjct: 383 IAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVD 442

Query: 174 MYGKCGCLKEARRVLNDMP-SKDVVTWNSM 202
           + G+ G L+EA  ++  MP   D V W ++
Sbjct: 443 LLGRAGLLEEAEELIKSMPIEADAVVWGAL 472


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 194/551 (35%), Positives = 301/551 (54%), Gaps = 56/551 (10%)

Query: 12  STTKPVQALVLSTQYTLLSGDACNDILDKYPD---IKTLKKLHAQIIINQHLHS---NPS 65
           S++ P Q+ V+         D C D+ +K+     IK   +L A  +    +H      S
Sbjct: 102 SSSDPFQSFVIFLDLL----DKCEDLPNKFTFPFVIKAASELKASRV-GTAVHGMAIKLS 156

Query: 66  IGL------KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
            G+       L+R YGACG +     +F  I+ K+VV +N +I ++       DAL ++ 
Sbjct: 157 FGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFL 216

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M      P+  T   VL AC+    L  G  +   + + G+  +L   N ++ MY KCG
Sbjct: 217 KMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCG 276

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
            + +A+++ ++MP +DV +W  M+ GYA+ G +D A  V                     
Sbjct: 277 SVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVF-------------------- 316

Query: 240 SVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI-EPN 298
                   N + VKE         + +WNV+I+ Y  N  P EA+ ++ ++++  I +P+
Sbjct: 317 --------NAMPVKE---------IAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPD 359

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
            +++ S L AC  L A+ LG  IH Y++R+ +  N  L ++LVDMYAKCGSL +A  VF 
Sbjct: 360 EVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFY 419

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
            +  +DV  W++MI+  GM G+G  A+ LF +M  + + P+S+ F +VL ACSHAGL++E
Sbjct: 420 SVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDE 479

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           GR +F  M   Y +VP ++H+AC+VD+LGRAG +EEA +LI +M   P+  +WG+L+ AC
Sbjct: 480 GRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGAC 539

Query: 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
            L+ N+++G LA+D +  L P   G  VLLSNIYAK GRW  V  +RK M    +KK PG
Sbjct: 540 SLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPG 599

Query: 539 -ASVEMNDQVQ 548
            +S+E N  V 
Sbjct: 600 CSSIEANGNVH 610



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 215/467 (46%), Gaps = 85/467 (18%)

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGL--VAMYGKCGCLKEARRVLNDMPS 193
            +  CS S  L    ++H  +++ GL ++ F+ + L   +       L  AR + + +P 
Sbjct: 31  TIDKCSSSKQLK---EVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQ 87

Query: 194 KDVVTWNSMVAGYAQNGR-------FDEALDVCREMESLRIKPDADTMASLLPSVTNTSP 246
            ++ TWN+++  YA +         F + LD C ++ +    P     AS L +    + 
Sbjct: 88  PNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTA 147

Query: 247 ENVLSVK---------------------------EMFLKLDNKNLVSWNVMIAVYANNSM 279
            + +++K                            +F  +  K++VSWN MI+ +A  + 
Sbjct: 148 VHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNC 207

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
           P +A++L+L+ME   + PN++++  VL AC     L  GR +  Y+ERK ++ +L L NA
Sbjct: 208 PEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNA 267

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM---------------------------- 371
           ++DMY KCGS+ +A+ +FD+M  +DV SWT M                            
Sbjct: 268 MLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAW 327

Query: 372 ---ISAYGMSGQGYDAVALFSKMLMSGLC-PDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
              ISAY  +G+  +A+A+F+++ +S +  PD +  VS LSAC+  G ++ G  +  +  
Sbjct: 328 NVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGG-WIHVYI 386

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
           ++  +V      + LVD+  + G +E+A ++   +  E +  +W +++A   ++     G
Sbjct: 387 KREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVE-ERDVYVWSAMIAGLGMHGR---G 442

Query: 488 ILAADHIFHL-----APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529
             A D  F +      PN     V  +N+       G V   R F +
Sbjct: 443 KAAIDLFFEMQEAKVKPNS----VTFTNVLCACSHAGLVDEGRVFFH 485


>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
 gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 196/548 (35%), Positives = 306/548 (55%), Gaps = 41/548 (7%)

Query: 34  CNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH---VFDEI 90
           C  +L +    KTL ++HA I+ N  + +N +I  K + T   CGQ+  TRH   +FD  
Sbjct: 5   CLFLLQRCRTRKTLLQIHALILRNA-IDANVNILTKFITT---CGQLSSTRHARHLFDNR 60

Query: 91  TNKNVVFF-NVLIRSYVNNYLYYDALHVYKNMSVHG-FDPDCYTYPCVLKACSGSNSLLV 148
           +++   F  N +I+S+V      DA  +YK++     F PD +T+  + K C+   ++  
Sbjct: 61  SHRGDTFLCNSMIKSHVVMRQLADAFTLYKDLRRETCFVPDNFTFTVLAKCCALRMAVWE 120

Query: 149 GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
           GL+ H  VVK+G  ++++    LV MY K G L  AR+V NDMP + +V+W +++ GY +
Sbjct: 121 GLETHGHVVKIGFCFDMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVR 180

Query: 209 NGRFDEALDVCR---------------------EMESLRI----KPDADTMA--SLLPSV 241
            G    A  + +                     +MES R      P+ + ++  S++   
Sbjct: 181 RGDMGNAWFLFKLMPGRDSAAFNLLIDGYVKVGDMESARSLFDEMPERNVISWTSMIYGY 240

Query: 242 TNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI-EPNAI 300
            N    +VLS + +F  +  KNLVSWN MI  Y  N  P EA+ L+ +++   + EPN +
Sbjct: 241 CNNG--DVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEV 298

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           +V S+LPA   L AL LG  +HR+V+RKKL   + +  +LVDMY KCG +++AR VF ++
Sbjct: 299 TVVSILPAIATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEI 358

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             ++  +W ++I+ + M+G   +A+  FS+M   G+ P+ I    VLSACSH GL+EEG+
Sbjct: 359 PKKETATWNALINGFAMNGLASEALEAFSEMQQEGIKPNDITMTGVLSACSHGGLVEEGK 418

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
             FK M E   L P+IEH+ CLVDLLGRAG ++EA +LIK MP E N  I  S   AC  
Sbjct: 419 GQFKAMIES-GLSPKIEHYGCLVDLLGRAGCLDEAENLIKSMPFEANGIILSSFSFACGF 477

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            +++       +   ++ P  +G YV++ N+YA   RW DVK +   M  +G KK  G+S
Sbjct: 478 SNDVTRAQRVLNQAVNMEPGNNGIYVMMRNLYAMEERWKDVKEINGLMRRRGAKKEVGSS 537

Query: 541 -VEMNDQV 547
            +E++ +V
Sbjct: 538 AIEVDSRV 545


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 195/597 (32%), Positives = 315/597 (52%), Gaps = 77/597 (12%)

Query: 23  STQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD 82
           +  + L+  +    +L+    +  +K++HAQ+I    +    S G  L R    C  + +
Sbjct: 46  NASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLI----SDGFALSRLVAFCA-ISE 100

Query: 83  TRH------VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD-PDCYTYPC 135
            R+      + +   N N   +N+ IR YV +    +A+ +Y+NM   G   PD YTYP 
Sbjct: 101 WRNLDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPL 160

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
           + K C+G +      +I   V+++G D +LF  N ++ +   CG L  AR++ ++   +D
Sbjct: 161 LFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRD 220

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN------------ 243
           +V+WNS++ GY + G  DEA D+  +M  L + PD  TM  ++ +               
Sbjct: 221 LVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQ 280

Query: 244 ---------TSP------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYAN------ 276
                    T P            +N+ + K +F  +  K +VSW  M+  YA       
Sbjct: 281 SIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLES 340

Query: 277 -----NSMPA--------------------EAVDLYLQMEVHGIEPNAISVASVLPACGD 311
                N MP                     EA+ L+ +M+   + P+ I+V + L AC  
Sbjct: 341 AVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQ 400

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           L AL +G  +H YV++  L  N+ L  ALVDMYAKCG++ +A  VF++M  ++ ++WT++
Sbjct: 401 LGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAI 460

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           I    + GQ + A++ FS+M+  GL PD I F+ VLSAC H GL+++GR YF  MT +Y 
Sbjct: 461 ICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYG 520

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
           + P+++H++CLVDLLGRAG +EEA +LI+ MP EP+  +WG+L     ++ N+ +G  AA
Sbjct: 521 ISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAA 580

Query: 492 DHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
             +  L P+  G YVLL+N+Y  A  W   ++VRK M  +G++K PG +S+EMN  V
Sbjct: 581 SKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLV 637



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 157/365 (43%), Gaps = 32/365 (8%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N ++D Y   K ++   A+I+              ++  Y   G +     +F+E+  K+
Sbjct: 295 NALMDMYIKCKNIEA--AKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKD 352

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
           VV +N LI  +V      +AL ++  M      PD  T    L ACS   +L VG+ +H 
Sbjct: 353 VVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHH 412

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            V K  L  N+  G  LV MY KCG +K+A +V  +MP ++ +TW +++ G A +G+   
Sbjct: 413 YVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHA 472

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS-----WNV 269
           A+    EM S+ + PD  T   +L +  +     V   ++ F ++ +K  +S     ++ 
Sbjct: 473 AISYFSEMISIGLVPDEITFIGVLSACCHGGL--VDQGRDYFYQMTSKYGISPKLKHYSC 530

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           ++ +        EA +L   M     EP+A+             AL  G +IH  V   +
Sbjct: 531 LVDLLGRAGFLEEAEELIRSMP---FEPDAVV----------WGALFFGSRIHGNVHMGE 577

Query: 330 LQPNLRLE---------NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
              +  LE           L +MY       +AR V   M  + V   T   S+  M+G 
Sbjct: 578 RAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEK-TPGCSSIEMNGL 636

Query: 381 GYDAV 385
            YD +
Sbjct: 637 VYDFI 641


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 174/508 (34%), Positives = 285/508 (56%), Gaps = 40/508 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++ T K  H  ++I   L S+  I   L+  Y  CG++     VF  I  ++VV +N +I
Sbjct: 151 ELFTGKAFHG-MVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMI 209

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            ++V      +AL +++ M      P+  T   VL AC+  +    G  +H  + +  + 
Sbjct: 210 TAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIG 269

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            +L   N ++ MY KCG +++A+R+ + MP KD+V+W +M+ GYA+ G +D A       
Sbjct: 270 ESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAA------- 322

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                                         + +F  + N+++ +WN +I+ Y     P E
Sbjct: 323 ------------------------------QGIFDAMPNQDIAAWNALISAYEQCGKPKE 352

Query: 283 AVDLYLQMEVHGI-EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
           A++L+ ++++    +P+ +++ S L AC  L A+ LG  IH Y++++ ++ N  L  +L+
Sbjct: 353 ALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLI 412

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           DMY KCG L +A  VF  +  +DV  W++MI+   M G G DA+ALFSKM    + P+++
Sbjct: 413 DMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAV 472

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
            F ++L ACSH GL+EEGR +F  M   Y ++P ++H+AC+VD+LGRAG +EEA +LI++
Sbjct: 473 TFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEK 532

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
           MPM P   +WG+L+ AC ++ N+ +   A   +  L P   G YVLLSNIYAKAG+W  V
Sbjct: 533 MPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRV 592

Query: 522 KRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
             +RK M   G+KK PG +S+E++  V 
Sbjct: 593 SGLRKLMRDVGLKKEPGCSSIEVDGIVH 620


>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Cucumis sativus]
          Length = 542

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 180/508 (35%), Positives = 289/508 (56%), Gaps = 10/508 (1%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG--ACGQMVDTRHVFDEITNKN 94
           +  K  + ++LK+LHA +I+N  L+S  S+  +L+        G M     +F +I+  +
Sbjct: 19  LWQKCTNFRSLKQLHAFLIVNG-LNSTTSVLRELIFVSAIVVSGTMDYAHQLFAQISQPD 77

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
           +  +N +IR          A+ +Y  M   G  PD +T+  VLKAC+  + + +G  IH 
Sbjct: 78  IFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHG 137

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            V+K G   N F  N L+  +  CG L  AR + +    ++VV W+++ AGYA+ G+ D 
Sbjct: 138 KVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDV 197

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
           A  +  EM      P  D ++  +          +   +++F ++  K++V+WN MIA Y
Sbjct: 198 ARQLFDEM------PMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGY 251

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV-ERKKLQPN 333
             + +  EA++++  M   G  P+ +++ S+L A  DL  L +G+KIHR + +      +
Sbjct: 252 VLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLS 311

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
           + L NAL+DMYAKCGS+  A  VF  MR +D  SW S+I    + G   +++ LF +ML 
Sbjct: 312 VLLSNALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLR 371

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
             + P+ I FV+VL ACSHAG + EGR YF +M   +K+ P I+H+ C+VD+LGRAG + 
Sbjct: 372 LKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGCMVDILGRAGLLI 431

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA+D I  M +EPN  IW +L+ AC ++ ++++G  A + +  +  ++SG YVLLSNIYA
Sbjct: 432 EAFDFIDTMEIEPNAIIWRTLLGACRVHGDVELGRRANEQLLKMRKDESGDYVLLSNIYA 491

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGASV 541
             G W  V++VRK M+  G+KK  G S+
Sbjct: 492 SQGEWDGVQKVRKLMDDGGVKKKVGHSL 519


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 192/533 (36%), Positives = 293/533 (54%), Gaps = 35/533 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+ T + +HAQ+   + + S       L   Y  C +  D R VFD +  ++ V +N L+
Sbjct: 74  DLATGRAVHAQLAA-RGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALV 132

Query: 103 RSYVNNYLYYDALH-VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
             Y  N L   A+  V +     G  PD  T   VL AC+ + +L    + H   ++ GL
Sbjct: 133 AGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGL 192

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL----- 216
           +  +     ++  Y KCG ++ AR V + MP+K+ V+WN+M+ GYAQNG   EAL     
Sbjct: 193 EELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNR 252

Query: 217 -----------------DVCREM----ESLRI-----KPDADTMASLLPSVTN--TSPEN 248
                              C E+    E +R+     +   D+  S++ ++    +  + 
Sbjct: 253 MVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKR 312

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           V     +F +LD +  VSWN MI   A N    +AV L+ +M++  ++P++ ++ SV+PA
Sbjct: 313 VDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPA 372

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
             D+S  L  R IH Y  R  L  ++ +  AL+DMYAKCG +  AR +F+  R + V++W
Sbjct: 373 LADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITW 432

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            +MI  YG  G G  AV LF +M   G+ P+   F+SVLSACSHAGL++EGR YF  M E
Sbjct: 433 NAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKE 492

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
            Y L P +EH+  +VDLLGRAGK++EA+  I++MPM+P   ++G+++ AC L+ N+++  
Sbjct: 493 DYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAE 552

Query: 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
            +A  IF L P +  Y+VLL+NIYA A  W DV RVR  M   G++K PG S+
Sbjct: 553 ESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSI 605



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 137/499 (27%), Positives = 216/499 (43%), Gaps = 89/499 (17%)

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           AL  +  MS  G  P   T+  +LK C+    L  G  +H  +   G+D        L  
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD-VCREMESLRIKPDAD 232
           MY KC    +ARRV + MP +D V WN++VAGYA+NG    A++ V R  E    +PD+ 
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 233 TMASLLP------------------------SVTNTSPE---------NVLSVKEMFLKL 259
           T+ S+LP                         + N +           ++ + + +F  +
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
             KN VSWN MI  YA N    EA+ L+ +M   G++   +SV + L ACG+L  L  G 
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
           ++H  + R  L  N+ + NAL+ MY+KC  +  A  VFD++  +  VSW +MI     +G
Sbjct: 283 RVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNG 342

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YYFKIMTEQYKLVPR 435
              DAV LF++M +  + PDS   VSV+ A +      + R    Y  ++  +Q   V  
Sbjct: 343 CSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYV-- 400

Query: 436 IEHFACLVDLLGRAGKVE----------------------------------EAYDLIKQ 461
                 L+D+  + G+V                                   E ++ +K 
Sbjct: 401 ---LTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKS 457

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIG---ILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
           + + PNE  + S+++AC     +D G     +    + L P    Y  ++  +    GR 
Sbjct: 458 IGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLL----GRA 513

Query: 519 GDVKRVRKFMNSKGIKKMP 537
           G +     F     I+KMP
Sbjct: 514 GKLDEAWAF-----IQKMP 527



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 2/137 (1%)

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           A  A + +PA A+  ++ M   G  P   +  S+L  C     L  GR +H  +  + + 
Sbjct: 33  ASAARSDLPA-ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGID 91

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
                  AL +MYAKC    +AR VFD+M  +D V+W ++++ Y  +G    A+ +  +M
Sbjct: 92  SEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRM 151

Query: 392 L-MSGLCPDSIAFVSVL 407
               G  PDSI  VSVL
Sbjct: 152 QEEEGERPDSITLVSVL 168


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 178/531 (33%), Positives = 294/531 (55%), Gaps = 65/531 (12%)

Query: 45  KTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           K  + +H  ++       N  +G +LM  YG  G+M D R VF+ +  ++ V +N ++  
Sbjct: 152 KLCRSVHGHVV-EMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSG 210

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA----------------------CSG 142
           Y  NY  + A  +++ M   G +P+  T+  +L +                       + 
Sbjct: 211 YALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGAT 270

Query: 143 SNSLLV-------------GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
           + +L V             G  IH  VVK G +  LF  N L+ +YGK G +  AR +  
Sbjct: 271 AEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFL 330

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
           ++ +K++V+WN++++ YA  G  DEA  +  ++E    K D   M               
Sbjct: 331 EIKTKNIVSWNALISSYADLGWCDEAFAIFLQLE----KTDEYPMV-------------- 372

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                        N+VSW+ +I  +A+     EA++L+ +M++  ++ N++++ASVL  C
Sbjct: 373 -----------RPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVC 421

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
            +L+AL LGR+IH +V R  +  N+ + N L++MY K GS  E   VF+++  +D++SW 
Sbjct: 422 AELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWN 481

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           +M++ YG+ G G +A+  F +M+  G  PD + FV+VLSACSHAGL+ EGR  F  M ++
Sbjct: 482 TMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKE 541

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           +++ P++EH+AC+VDLLGRAG ++EA  ++K MP+EPN  +WG+L+ +C ++ N ++   
Sbjct: 542 FRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEE 601

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            A  IF+L    +G Y+LLSNIYA +GRW D  +VR    +KG+KK PG S
Sbjct: 602 TASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQS 652



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 212/449 (47%), Gaps = 85/449 (18%)

Query: 22  LSTQYTLLSGDACNDILDKYPDI-------KTLKKLHAQIIINQHLHSNPSIGLKLMRTY 74
           LS   +++     ND+LD + D+          +++H+QII+    H +  +  +++  Y
Sbjct: 18  LSRSISIIHHQPNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGS-HRSAFLAARVVSVY 76

Query: 75  GACGQMVDTRHVFDEITN----KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDC 130
              G + D + VF E++      N++ +N ++R+ V +    +AL +Y  M   G   D 
Sbjct: 77  AGFGLVSDAQRVF-EVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADG 135

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
           +T+P V++AC+   S  +   +H  VV++G  +NL  GN L+ MYGK G + +AR+V   
Sbjct: 136 FTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFER 195

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL 250
           M  +  V+WN+MV+GYA N     A ++ R M S  ++P                     
Sbjct: 196 MAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEP--------------------- 234

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
                       NLV+W  +++ +A      E ++L+ +M + GI   A ++A VL    
Sbjct: 235 ------------NLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSV 282

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           DL+A   G+ IH YV +   +  L ++N+L+ +Y K G++  AR +F +++ +++VSW +
Sbjct: 283 DLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNA 342

Query: 371 MISAY---------------------------------------GMSGQGYDAVALFSKM 391
           +IS+Y                                          GQG +A+ LF +M
Sbjct: 343 LISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 402

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
            ++ +  +S+   SVLS C+    L  GR
Sbjct: 403 QLAKVKANSVTIASVLSVCAELAALHLGR 431



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 125/271 (46%), Gaps = 26/271 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++H  ++    +  N  +G  L+  Y   G   +   VF++I NK+++ +N ++  Y  
Sbjct: 431 REIHGHVV-RSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGI 489

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYNLF 166
           + L  +A+  +  M   GF+PD  T+  VL ACS +  +  G ++   ++K   ++  + 
Sbjct: 490 HGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQME 549

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           +   +V + G+ G L+EA +V+  MP + +   W +++     + R  +  +V  E  S 
Sbjct: 550 HYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALL----NSCRMHKNTEVAEETASQ 605

Query: 226 RIKPDADTMAS--LLPSVTNTSPENVLSVKEMFLKLDNKNL-----VSW-NVMIAVY--- 274
               +++   S  LL ++   S     S K + +    K L      SW  V   VY   
Sbjct: 606 IFNLNSEIAGSYMLLSNIYAASGRWEDSAK-VRISAKTKGLKKTPGQSWIQVKKKVYMFS 664

Query: 275 ANNSMPAEAVDLY-------LQMEVHGIEPN 298
           A N+  AE  ++Y       LQMEV G  P+
Sbjct: 665 AGNTQHAELEEVYRILKDLGLQMEVEGYIPD 695


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 176/481 (36%), Positives = 270/481 (56%), Gaps = 42/481 (8%)

Query: 69  KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
           KL R+Y + G++  +  +F    N +V F+  +I  +    L+  AL+ Y  M   G +P
Sbjct: 14  KLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEP 73

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           + +T+  +LK C     +  G  +H   VK+G D +L+   GL+ +Y + G +  A+++ 
Sbjct: 74  NAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLF 129

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
           + MP K +V+  +M+  YA++G  D A                                 
Sbjct: 130 DTMPEKSLVSLTAMLTCYAKHGELDAA--------------------------------- 156

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
               + +F  ++ ++ V WNVMI  Y  N MP EA+ L+ +M     +PN ++V SVL A
Sbjct: 157 ----RVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSA 212

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           CG L AL  GR +H Y+E   +Q N+ +  ALVDMY+KCGSL +AR VFD++  +DVV+W
Sbjct: 213 CGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAW 272

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            SMI  Y M G   +A+ LF  M   GL P +I F+ +LSAC H+G + EG   F  M +
Sbjct: 273 NSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKD 332

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
           +Y + P+IEH+ C+V+LLGRAG VE+AY+L+K M +EP+  +WG+L+ AC L+  + +G 
Sbjct: 333 EYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGE 392

Query: 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
              + +       SG Y+LLSNIYA  G W  V R+R  M   G+KK PG +S+E+N++V
Sbjct: 393 KIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKV 452

Query: 548 Q 548
            
Sbjct: 453 H 453



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 105/214 (49%), Gaps = 14/214 (6%)

Query: 2   KAVVLLCRHF-STTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHL 60
           +A+VL  R   +  KP +  VLS    +LS  AC  +      +++ + +H+  I N  +
Sbjct: 186 EALVLFRRMLKAKAKPNEVTVLS----VLS--ACGQL----GALESGRWVHS-YIENNGI 234

Query: 61  HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKN 120
             N  +G  L+  Y  CG + D R VFD+I +K+VV +N +I  Y       +AL ++K+
Sbjct: 235 QFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKS 294

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV-KVGLDYNLFNGNGLVAMYGKCG 179
           M   G  P   T+  +L AC  S  +  G  I   +  + G++  + +   +V + G+ G
Sbjct: 295 MCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAG 354

Query: 180 CLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRF 212
            +++A  ++ +M    D V W +++     +G+ 
Sbjct: 355 HVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKI 388


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 174/534 (32%), Positives = 293/534 (54%), Gaps = 35/534 (6%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +LHA  +     + N  +G   +  Y  C +MVD R VF+   N      N LI  Y   
Sbjct: 292 QLHAYALKTNFGYDNI-VGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQ 350

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
               +AL +++++     D D  +    L ACS     L G+Q+H   VK GLD+N+   
Sbjct: 351 DQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVA 410

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           N ++ MY KCG L EA  + +DM  KD V+WN+++A + QN   +E L +   M    ++
Sbjct: 411 NTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTME 470

Query: 229 PDADTMASLLPSVTNTSPEN---------------------------------VLSVKEM 255
           PD  T  S++ +       N                                 ++  +++
Sbjct: 471 PDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKI 530

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
             +L+ +  VSWN +I+ +++      A+  + +M   G+ P+  + A+VL  C +L+ +
Sbjct: 531 HERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATV 590

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
            LG++IH  + + +L  ++ + + +VDMY+KCG++ ++R +F++   +D V+W++MI AY
Sbjct: 591 ELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAY 650

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
              G G DA+ LF +M +  + P+   F+SVL AC+H G +++G +YF+ M   Y L P+
Sbjct: 651 AYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQ 710

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
           +EH++C+VDLLGR+G+V EA +LI+ MP E ++ IW +L+  C L  N+++   AA+ + 
Sbjct: 711 MEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLL 770

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            L P  S  YVLLSN+YA AG WG+V ++R FM +  +KK PG S +++ D+V 
Sbjct: 771 QLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVRDEVH 824



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 210/439 (47%), Gaps = 39/439 (8%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y   G M   + +FD +  ++VV +N ++  Y+ N  +  ++ ++  M +     D  T+
Sbjct: 114 YAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATF 173

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             VLKAC+G     +GLQ+HC  +++G D ++  G  LV MY  C  L  A  +  +MP 
Sbjct: 174 AVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPE 233

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV------------ 241
           ++ V W++++AGY +N RF E L + + M    +     T AS   S             
Sbjct: 234 RNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQL 293

Query: 242 ------TNTSPENVLSVK--EMFLKLD-------------NKNLVSWNVMIAVYANNSMP 280
                 TN   +N++     +M+ K D             N    S N +I  YA     
Sbjct: 294 HAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQV 353

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            EA++++  ++   ++ + IS++  L AC  +   L G ++H    +  L  N+ + N +
Sbjct: 354 LEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTI 413

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +DMYAKCG+L EA  +FD M  +D VSW ++I+A+  +    + +ALF  ML S + PD 
Sbjct: 414 LDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDD 473

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDL 458
             F SV+ AC+    L  G    ++     K    ++ F  + ++D+  + G + EA  +
Sbjct: 474 YTFGSVVKACAGKKALNYG---MEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKI 530

Query: 459 IKQMPMEPNERIWGSLVAA 477
            +++  E     W S+++ 
Sbjct: 531 HERLE-ERTTVSWNSIISG 548



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 118/469 (25%), Positives = 228/469 (48%), Gaps = 42/469 (8%)

Query: 54  IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
           + I     S+   G  L+  Y  C ++    ++F E+  +N V ++ +I  YV N  + +
Sbjct: 195 LAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTE 254

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
            L +YK M   G      T+    ++C+G ++  +G Q+H   +K    Y+   G   + 
Sbjct: 255 GLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLD 314

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MY KC  + +AR+V N  P+    + N+++ GYA+  +  EAL++ R ++   +  D  +
Sbjct: 315 MYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEIS 374

Query: 234 MASLLPSVTNTSP--ENV----LSVK--------------EMFLK-------------LD 260
           ++  L + +      E +    L+VK              +M+ K             ++
Sbjct: 375 LSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDME 434

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
            K+ VSWN +IA +  N    E + L++ M    +EP+  +  SV+ AC    AL  G +
Sbjct: 435 IKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGME 494

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
           +H  V +  +  +  + +A++DMY KCG L EA  + +++  +  VSW S+IS +    Q
Sbjct: 495 VHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQ 554

Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF- 439
           G +A++ FS+ML  G+ PD+  + +VL  C++   +E G+   +I  +  KL    + + 
Sbjct: 555 GENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGK---QIHGQILKLQLHSDVYI 611

Query: 440 -ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
            + +VD+  + G ++++  + ++ P    +R + +  A  C Y+   +G
Sbjct: 612 ASTIVDMYSKCGNMQDSRIMFEKAP----KRDYVTWSAMICAYAYHGLG 656



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 149/338 (44%), Gaps = 55/338 (16%)

Query: 116 HVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG------- 168
             +  ++V GF P  +   C+L             Q +C  + +   +N+F+        
Sbjct: 59  QAHAQITVTGFVPTVFVSNCLL-------------QFYCKCLNLNYAFNVFDKMPQRDVI 105

Query: 169 --NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
             N ++  Y   G ++ A+ + + MP +DVV+WNSM++ Y QNG   +++++  +M  L 
Sbjct: 106 SWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLE 165

Query: 227 IKPDADTMASLLPS--------------------------VTNTSPENVLSVKE------ 254
           I+ D  T A +L +                          VT T+  ++ S  +      
Sbjct: 166 IQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAF 225

Query: 255 -MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
            +F ++  +N V W+ +IA Y  N    E + LY  M   G+  +  + AS   +C  LS
Sbjct: 226 NIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLS 285

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           A  LG ++H Y  +     +  +  A +DMYAKC  + +AR VF+        S  ++I 
Sbjct: 286 AFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIV 345

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
            Y    Q  +A+ +F  +  S L  D I+    L+ACS
Sbjct: 346 GYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACS 383



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 134/313 (42%), Gaps = 43/313 (13%)

Query: 36  DILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNV 95
           DI      ++  K++H QI+  Q LHS+  I   ++  Y  CG M D+R +F++   ++ 
Sbjct: 582 DICANLATVELGKQIHGQILKLQ-LHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDY 640

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
           V ++ +I +Y  + L  DA+ +++ M +    P+   +  VL+AC+    +  GL     
Sbjct: 641 VTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFRE 700

Query: 156 V-VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFD 213
           +    GLD  + + + +V + G+ G + EA  ++  MP   D V W ++           
Sbjct: 701 MRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTL----------- 749

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273
             L +CR   ++ +   A                         L+LD ++  ++ ++  V
Sbjct: 750 --LGICRLQGNVEVAEKA---------------------ANSLLQLDPQDSSAYVLLSNV 786

Query: 274 YANNSMPAEAVDLYLQMEVHGI--EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           YA   M  E   +   M+ + +  EP      S +    ++ A L+G K H   E    Q
Sbjct: 787 YAIAGMWGEVAKIRSFMKNYKLKKEPG----CSWIQVRDEVHAFLVGDKAHPRSEEIYQQ 842

Query: 332 PNLRLENALVDMY 344
            +L ++    D Y
Sbjct: 843 THLLVDEMKWDGY 855



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 41/224 (18%)

Query: 292 VHGIEPNA------ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
           +H I  N       ++ + +   C +L A+  G++ H  +      P + + N L+  Y 
Sbjct: 25  IHSISSNQMNPTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYC 84

Query: 346 KC-------------------------------GSLTEARTVFDQMRCQDVVSWTSMISA 374
           KC                               G++  A+ +FD M  +DVVSW SM+S 
Sbjct: 85  KCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSC 144

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-RYYFKIMTEQYKLV 433
           Y  +G    ++ +F+KM +  +  D   F  VL AC+  G+ + G       +  Q    
Sbjct: 145 YLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACT--GIEDYGLGLQVHCLAIQMGFD 202

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             +     LVD+     K++ A+++  +MP E N   W +++A 
Sbjct: 203 SDVVTGTALVDMYSTCKKLDHAFNIFCEMP-ERNSVCWSAVIAG 245


>gi|356533824|ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 630

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 188/541 (34%), Positives = 297/541 (54%), Gaps = 46/541 (8%)

Query: 45  KTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           K  ++ HAQI+ N     N  +  +L+  Y  CG++  +R VF+ +  K+V  +N LI  
Sbjct: 45  KLAQQSHAQILANG-FAQNAFLATRLVSAYATCGELATSRFVFESVEAKSVYLWNSLING 103

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
           YV N+ +  AL +++ M  +G  PD YT   V K       L+ G  IH   +++G   +
Sbjct: 104 YVKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVSGKLIHGKGIRIGFVSD 163

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA--QNGRF---DEALDVC 219
           +  GN L++MY +CG   +A +V ++ P ++V ++N +++G A  +N  F   D+  +  
Sbjct: 164 VVVGNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVVISGCAALENCNFTSHDDLSNFF 223

Query: 220 REMESLRIKPDADTMASLLPS------------------VTN------------------ 243
             M+    K DA T+ASLLP                   V N                  
Sbjct: 224 LRMQCEGFKADAFTVASLLPVCCGDTGKWDYGRELHCYVVKNGLDLKMDSDVHLGSSLID 283

Query: 244 --TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAI 300
             +  + V+  + +F ++ N+N+  W  MI  Y  N  P +A+ L   M++  GI PN +
Sbjct: 284 MYSRSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLRAMQMKDGIRPNKV 343

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           S+ S LPACG L+ L+ G++IH +  + +L  ++ L NAL+DMY+KCGSL  AR  F+  
Sbjct: 344 SLISALPACGLLAGLIGGKQIHGFSIKMELNDDVSLCNALIDMYSKCGSLDYARRAFETS 403

Query: 361 R-CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
              +D ++W+SMISAYG+ G+G +A+  + KML  G  PD I  V VLSACS +GL++EG
Sbjct: 404 SYFKDAITWSSMISAYGLHGRGEEAIIAYYKMLQQGFKPDMITVVGVLSACSKSGLVDEG 463

Query: 420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
              +K +  +Y++ P +E  AC+VD+LGR+G++++A + IK+MP++P   +WGSL+ A  
Sbjct: 464 ISIYKSLMTKYEIKPTVEICACVVDMLGRSGQLDQALEFIKEMPLDPGPSVWGSLLTASV 523

Query: 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA 539
           ++ N     LA  H+  L P     Y+ LSN YA   RW  V  VR  M  +G+KK+PG 
Sbjct: 524 IHGNSRTRDLAYRHLLELEPENPSNYISLSNTYASDRRWDVVTEVRTIMKERGLKKVPGC 583

Query: 540 S 540
           S
Sbjct: 584 S 584



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 190/403 (47%), Gaps = 53/403 (13%)

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
           +L+ C    S  +  Q H  ++  G   N F    LV+ Y  CG L  +R V   + +K 
Sbjct: 34  LLQLCIDLRSQKLAQQSHAQILANGFAQNAFLATRLVSAYATCGELATSRFVFESVEAKS 93

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK-- 253
           V  WNS++ GY +N  F +AL + REM    + PD  T+A++         E+++S K  
Sbjct: 94  VYLWNSLINGYVKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGEL--EDLVSGKLI 151

Query: 254 ---------------------------------EMFLKLDNKNLVSWNVMIAVYA----- 275
                                            ++F +  ++N+ S+NV+I+  A     
Sbjct: 152 HGKGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVVISGCAALENC 211

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA-CGDLSALLLGRKIHRYVERK----KL 330
           N +   +  + +L+M+  G + +A +VAS+LP  CGD      GR++H YV +     K+
Sbjct: 212 NFTSHDDLSNFFLRMQCEGFKADAFTVASLLPVCCGDTGKWDYGRELHCYVVKNGLDLKM 271

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
             ++ L ++L+DMY++   +   R VFDQM+ ++V  WT+MI+ Y  +G   DA+ L   
Sbjct: 272 DSDVHLGSSLIDMYSRSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLRA 331

Query: 391 MLM-SGLCPDSIAFVSVLSACS-HAGLLEEGRYY-FKIMTEQYKLVPRIEHFACLVDLLG 447
           M M  G+ P+ ++ +S L AC   AGL+   + + F I  E   L   +     L+D+  
Sbjct: 332 MQMKDGIRPNKVSLISALPACGLLAGLIGGKQIHGFSIKME---LNDDVSLCNALIDMYS 388

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
           + G ++ A    +      +   W S+++A  L+   +  I+A
Sbjct: 389 KCGSLDYARRAFETSSYFKDAITWSSMISAYGLHGRGEEAIIA 431



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%)

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           S+  +L  C DL +  L ++ H  +       N  L   LV  YA CG L  +R VF+ +
Sbjct: 30  SLLHLLQLCIDLRSQKLAQQSHAQILANGFAQNAFLATRLVSAYATCGELATSRFVFESV 89

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
             + V  W S+I+ Y  +     A+ALF +M  +G+ PD     +V 
Sbjct: 90  EAKSVYLWNSLINGYVKNHDFRQALALFREMGRNGMLPDDYTLATVF 136


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 178/536 (33%), Positives = 309/536 (57%), Gaps = 35/536 (6%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           + ++HA I+      ++ +   +L+ +YG    ++  R+VF+++  +++  +N +I +Y 
Sbjct: 1   MTQIHALILTTGLFFNDANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYS 60

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
                 + L++Y  M   G  PD  T+   LKACS    L +G  I    V  G  +++F
Sbjct: 61  RTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVF 120

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
             + ++ +Y K G + +A+ V + M  +DVV+W +M+ G+AQ+GR  +A+D+ R M+  R
Sbjct: 121 VVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKER 180

Query: 227 IKPDADTMASLLPSVTNTSP------------------ENVL--SVKEMFLK-------- 258
            + D   M  L+ + T+                     +NVL  S+ +M+ K        
Sbjct: 181 TEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELAS 240

Query: 259 -----LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
                +  K+++SW  +I+ +A N    + +   ++M+  G +P+ +S+ S L AC  + 
Sbjct: 241 RVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVG 300

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
            L +G+ +H ++  K+L  +     AL+DMYAKCG+LT AR +FDQ+  +D++ W +MIS
Sbjct: 301 NLKVGKSLHGHI-VKRLYLDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMIS 359

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
           +YG+ G G +A++LF KM  + + PD   F S+LSACSH+GL+EEG+Y+F ++ ++ K+ 
Sbjct: 360 SYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQ 419

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P  +H+AC+VDLL RAG+VEEAY LI+ M ++P   IW +L++ C  + N+ IG + A  
Sbjct: 420 PSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSGCLNHKNLLIGEMVAKK 479

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           I    P+  G YVL+SN ++ A +W D    RK M + G++K+PG ++VE+N  +Q
Sbjct: 480 ILESNPDDLGIYVLVSNFFSMAKKWDDAAVFRKIMKNTGMRKVPGYSAVEVNGDLQ 535


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 182/555 (32%), Positives = 300/555 (54%), Gaps = 46/555 (8%)

Query: 33  ACNDILDKYPD-IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
           ACN     +P+ ++  K++HA++     L +   +G  L+  Y  CG M D   VF+ + 
Sbjct: 315 ACN-----HPEALEQGKRVHARMK-EVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVK 368

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
            +NVV +  +I  +  +    +A   +  M   G +P+  T+  +L ACS  ++L  G Q
Sbjct: 369 GRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQ 428

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           IH  ++K G   +      L++MY KCG L +AR V   +  ++VV WN+M+  Y Q+ +
Sbjct: 429 IHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEK 488

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE------------------------ 247
           +D A+   + +    IKPD+ T  S+L      SP+                        
Sbjct: 489 YDNAVATFQALLKEGIKPDSSTFTSILNVCK--SPDALELGKWVQSLIIRAGFESDLHIR 546

Query: 248 -----------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE 296
                      +++S   +F  +  ++LVSWN +IA +  +     A D +  M+  G++
Sbjct: 547 NALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVK 606

Query: 297 PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTV 356
           P+ I+   +L AC    AL  GR++H  +    L  ++ +   L+ MY KCGS+ +A  V
Sbjct: 607 PDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLV 666

Query: 357 FDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL 416
           F  +  ++V SWTSMI+ Y   G+G +A+ LF +M   G+ PD I FV  LSAC+HAGL+
Sbjct: 667 FHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLI 726

Query: 417 EEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
           +EG ++F+ M + + + PR+EH+ C+VDL GRAG + EA + I +M ++P+ R+WG+L+ 
Sbjct: 727 KEGLHHFESMKD-FNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLG 785

Query: 477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKM 536
           AC ++ ++++    A     L PN  G YV+LSNIYA AG W +V ++RK M  +G+ K 
Sbjct: 786 ACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKK 845

Query: 537 PGAS-VEMNDQVQII 550
           PG S +E++ +V I 
Sbjct: 846 PGQSWIEVDGRVHIF 860



 Score =  231 bits (589), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 136/443 (30%), Positives = 228/443 (51%), Gaps = 39/443 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  CG     + +FDE+ +K+V  +N+L+  YV +  Y +A  +++ M   G  PD
Sbjct: 145 LISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPD 204

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            YT+  +L AC+ + ++  G ++   ++  G D +LF G  L+ M+ KCG + +A +V N
Sbjct: 205 KYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFN 264

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
           ++P +D++TW SM+ G A++ +F +A ++ + ME   ++PD     SLL +  +  PE +
Sbjct: 265 NLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNH--PEAL 322

Query: 250 LSVK-----------------------------------EMFLKLDNKNLVSWNVMIAVY 274
              K                                   E+F  +  +N+VSW  MIA +
Sbjct: 323 EQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGF 382

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           A +    EA   + +M   GIEPN ++  S+L AC   SAL  GR+IH  + +     + 
Sbjct: 383 AQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDD 442

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
           R+  AL+ MYAKCGSL +AR VF+++  Q+VV+W +MI+AY    +  +AVA F  +L  
Sbjct: 443 RVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKE 502

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           G+ PDS  F S+L+ C     LE G++   ++  +      +     LV +    G +  
Sbjct: 503 GIKPDSSTFTSILNVCKSPDALELGKWVQSLII-RAGFESDLHIRNALVSMFVNCGDLMS 561

Query: 455 AYDLIKQMPMEPNERIWGSLVAA 477
           A +L   MP E +   W +++A 
Sbjct: 562 AMNLFNDMP-ERDLVSWNTIIAG 583



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 225/457 (49%), Gaps = 35/457 (7%)

Query: 54  IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
           +I+N    ++  +G  L+  +  CG + D   VF+ +  ++++ +  +I     +  +  
Sbjct: 230 LILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQ 289

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           A ++++ M   G  PD   +  +LKAC+   +L  G ++H  + +VGLD  ++ G  L++
Sbjct: 290 ACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLS 349

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MY KCG +++A  V N +  ++VV+W +M+AG+AQ+GR +EA     +M    I+P+  T
Sbjct: 350 MYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVT 409

Query: 234 MASLLPSVTNTSP---------------------------------ENVLSVKEMFLKLD 260
             S+L + +  S                                   +++  + +F ++ 
Sbjct: 410 FMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERIS 469

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
            +N+V+WN MI  Y  +     AV  +  +   GI+P++ +  S+L  C    AL LG+ 
Sbjct: 470 KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKW 529

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
           +   + R   + +L + NALV M+  CG L  A  +F+ M  +D+VSW ++I+ +   G+
Sbjct: 530 VQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGE 589

Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA 440
              A   F  M  SG+ PD I F  +L+AC+    L EGR    ++TE   L   +    
Sbjct: 590 NQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEA-ALDCDVVVGT 648

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            L+ +  + G +++A+ +   +P + N   W S++  
Sbjct: 649 GLISMYTKCGSIDDAHLVFHNLP-KKNVYSWTSMITG 684



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 206/414 (49%), Gaps = 39/414 (9%)

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
           TY  +L+ C    +L  G +IH  +    +  ++F  N L++MY KCG    A+++ ++M
Sbjct: 106 TYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEM 165

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD----------------ADTMA 235
           P KDV +WN ++ GY Q+ R++EA  +  +M    +KPD                 D   
Sbjct: 166 PDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGG 225

Query: 236 SLLPSVTNTSPENVLSVK-----------------EMFLKLDNKNLVSWNVMIAVYANNS 278
            L   + N   +  L V                  ++F  L  ++L++W  MI   A + 
Sbjct: 226 ELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHR 285

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
              +A +L+  ME  G++P+ ++  S+L AC    AL  G+++H  ++   L   + +  
Sbjct: 286 QFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGT 345

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           AL+ MY KCGS+ +A  VF+ ++ ++VVSWT+MI+ +   G+  +A   F+KM+ SG+ P
Sbjct: 346 ALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEP 405

Query: 399 DSIAFVSVLSACSHAGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
           + + F+S+L ACS    L++GR  + +I+   Y    R+     L+ +  + G + +A +
Sbjct: 406 NRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR--TALLSMYAKCGSLMDARN 463

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH--LAPNQSGYYVLLS 509
           + +++  + N   W +++ A   +   D  +     +    + P+ S +  +L+
Sbjct: 464 VFERISKQ-NVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILN 516



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 186/416 (44%), Gaps = 56/416 (13%)

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV----TWNSMVAGYAQNGRFDEALDVC 219
           N    N  +    K G L EA  VL  + S  +     T++S++    ++    +   + 
Sbjct: 68  NTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIH 127

Query: 220 REMESLRIKPDA---DTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
             ++  +I+PD    + + S+     NT+     S K++F ++ +K++ SWN+++  Y  
Sbjct: 128 NHIKFSKIQPDIFMWNMLISMYAKCGNTN-----SAKQIFDEMPDKDVYSWNLLLGGYVQ 182

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           +    EA  L+ QM   G++P+  +   +L AC D   +  G ++   +       +L +
Sbjct: 183 HRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFV 242

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
             AL++M+ KCG + +A  VF+ +  +D+++WTSMI+      Q   A  LF  M   G+
Sbjct: 243 GTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGV 302

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMT----------------------------E 428
            PD +AFVS+L AC+H   LE+G+     M                             E
Sbjct: 303 QPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALE 362

Query: 429 QYKLVP--RIEHFACLVDLLGRAGKVEEAYDLIKQM---PMEPNERIWGSLVAACCLYSN 483
            + LV    +  +  ++    + G++EEA+    +M    +EPN   + S++ AC   S 
Sbjct: 363 VFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSA 422

Query: 484 MDIGILAADHIFHLAPNQSGYY------VLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           +  G    D I      ++GY         L ++YAK G   D + V + ++ + +
Sbjct: 423 LKQGRQIHDRII-----KAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNV 473



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 91/168 (54%)

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +D KN    N  +   +     +EA+ + L ++   I+ +  + +S+L  C     L  G
Sbjct: 64  VDIKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDG 123

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
            +IH +++  K+QP++ + N L+ MYAKCG+   A+ +FD+M  +DV SW  ++  Y   
Sbjct: 124 ERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQH 183

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
            +  +A  L  +M+  G+ PD   FV +L+AC+ A  +++G   F ++
Sbjct: 184 RRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLI 231


>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Glycine max]
          Length = 563

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 195/564 (34%), Positives = 300/564 (53%), Gaps = 53/564 (9%)

Query: 25  QYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR 84
           Q T+LS      +L K   ++ LKKLH  I+    + S   I L  +  +    +  D  
Sbjct: 4   QNTILS------LLAKCKSMRELKKLHGLIVTTPTIKS--IIPLSKLIDFCVDSEFGDIN 55

Query: 85  H---VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACS 141
           +   V  +I N +V  +N +IR +VN++    ++ +Y+ M  +G+ PD +T+P VLKAC 
Sbjct: 56  YADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACC 115

Query: 142 GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNS 201
                  G  IH  +VK G + + +   GL+ MY  C  +K   +V +++P  +VV W  
Sbjct: 116 VIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTC 175

Query: 202 MVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL----------------------- 238
           ++AGY +N +  EAL V  +M    ++P+  TM + L                       
Sbjct: 176 LIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAG 235

Query: 239 --PSVTNTSPENVLSV---------------KEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
             P ++ ++   +L+                +++F K+  +N+VSWN MI  Y       
Sbjct: 236 YDPFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQ 295

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
           EA+DL+  M   G+ P+  +  SVL  C    AL LG+ +H Y+ +  +  ++ L  AL+
Sbjct: 296 EALDLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALL 355

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM-SGLCPDS 400
           DMYAK G L  A+ +F  ++ +DVV WTSMI+   M G G +A+++F  M   S L PD 
Sbjct: 356 DMYAKTGELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDH 415

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           I ++ VL ACSH GL+EE + +F++MTE Y +VP  EH+ C+VDLL RAG   EA  L++
Sbjct: 416 ITYIGVLFACSHVGLVEEAKKHFRLMTEMYGMVPGREHYGCMVDLLSRAGHFREAERLME 475

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD 520
            M ++PN  IWG+L+  C ++ N+ +       +  L P QSG ++LLSNIYAKAGRW +
Sbjct: 476 TMTVQPNIAIWGALLNGCQIHENVCVANQVKVRLKELEPCQSGVHILLSNIYAKAGRWEE 535

Query: 521 VKRVRKFMNSKGIKKMPG-ASVEM 543
           V   RK M  K I K  G +SVEM
Sbjct: 536 VNVTRKVMKHKRITKTIGHSSVEM 559


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 192/533 (36%), Positives = 293/533 (54%), Gaps = 35/533 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+ T + +HAQ+   + + S       L   Y  C +  D R VFD +  ++ V +N L+
Sbjct: 74  DLATGRAVHAQLAA-RGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALV 132

Query: 103 RSYVNNYLYYDALH-VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
             Y  N L   A+  V +     G  PD  T   VL AC+ + +L    + H   ++ GL
Sbjct: 133 AGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGL 192

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL----- 216
           +  +     ++  Y KCG ++ AR V + MP+K+ V+WN+M+ GYAQNG   EAL     
Sbjct: 193 EELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNR 252

Query: 217 -----------------DVCREM----ESLRI-----KPDADTMASLLPSVTN--TSPEN 248
                              C E+    E +R+     +   D+  S++ ++    +  + 
Sbjct: 253 MVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKR 312

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           V     +F +LD +  VSWN MI   A N    +AV L+ +M++  ++P++ ++ SV+PA
Sbjct: 313 VDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPA 372

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
             D+S  L  R IH Y  R  L  ++ +  AL+DMYAKCG +  AR +F+  R + V++W
Sbjct: 373 LADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITW 432

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            +MI  YG  G G  AV LF +M   G+ P+   F+SVLSACSHAGL++EGR YF  M E
Sbjct: 433 NAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKE 492

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
            Y L P +EH+  +VDLLGRAGK++EA+  I++MPM+P   ++G+++ AC L+ N+++  
Sbjct: 493 DYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAE 552

Query: 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
            +A  IF L P +  Y+VLL+NIYA A  W DV RVR  M   G++K PG S+
Sbjct: 553 ESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSI 605



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 137/499 (27%), Positives = 216/499 (43%), Gaps = 89/499 (17%)

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           AL  +  MS  G  P   T+  +LK C+    L  G  +H  +   G+D        L  
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD-VCREMESLRIKPDAD 232
           MY KC    +ARRV + MP +D V WN++VAGYA+NG    A++ V R  E    +PD+ 
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 233 TMASLLP------------------------SVTNTSPE---------NVLSVKEMFLKL 259
           T+ S+LP                         + N +           ++ + + +F  +
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
             KN VSWN MI  YA N    EA+ L+ +M   G++   +SV + L ACG+L  L  G 
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
           ++H  + R  L  N+ + NAL+ MY+KC  +  A  VFD++  +  VSW +MI     +G
Sbjct: 283 RVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNG 342

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YYFKIMTEQYKLVPR 435
              DAV LF++M +  + PDS   VSV+ A +      + R    Y  ++  +Q   V  
Sbjct: 343 CSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYV-- 400

Query: 436 IEHFACLVDLLGRAGKVE----------------------------------EAYDLIKQ 461
                 L+D+  + G+V                                   E ++ +K 
Sbjct: 401 ---LTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKS 457

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIG---ILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
           + + PNE  + S+++AC     +D G     +    + L P    Y  ++  +    GR 
Sbjct: 458 IGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLL----GRA 513

Query: 519 GDVKRVRKFMNSKGIKKMP 537
           G +     F     I+KMP
Sbjct: 514 GKLDEAWAF-----IQKMP 527



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           + +PA A+  ++ M   G  P   +  S+L  C     L  GR +H  +  + +      
Sbjct: 38  SDLPA-ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALA 96

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML-MSG 395
             AL +MYAKC    +AR VFD+M  +D V+W ++++ Y  +G    A+ +  +M    G
Sbjct: 97  ATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEG 156

Query: 396 LCPDSIAFVSVL 407
             PDSI  VSVL
Sbjct: 157 ERPDSITLVSVL 168


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 184/546 (33%), Positives = 305/546 (55%), Gaps = 39/546 (7%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           P ++  K++HA I+    L  + S+   L+ +Y  CG+++    +F+ + NKN++ +  L
Sbjct: 263 PFLEGGKQIHAHIL-RYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTL 321

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           +  Y  N L+ +A+ ++ +MS  G  PD Y    +L +C+  ++L  G Q+H   +K  L
Sbjct: 322 LSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANL 381

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG---RFDEALDV 218
             + +  N L+ MY KC CL +AR+V +   + DVV +N+M+ GY++ G      EAL++
Sbjct: 382 GNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNI 441

Query: 219 CREMESLRIKPDADTMASLLPSVTNTSP------------------------------EN 248
            R+M    I+P   T  SLL +  + +                                N
Sbjct: 442 FRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSN 501

Query: 249 VLSVKEMFLKLDN---KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
              +K+  L  D    K+LV WN M A Y   S   EA++L+L++++    P+  + A++
Sbjct: 502 CYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANM 561

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           + A G+L+++ LG++ H  + ++ L+ N  + NAL+DMYAKCGS  +A   FD    +DV
Sbjct: 562 VTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDV 621

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           V W S+IS+Y   G+G  A+ +  KM+  G+ P+ I FV VLSACSHAGL+E+G   F++
Sbjct: 622 VCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFEL 681

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M  ++ + P  EH+ C+V LLGRAG++ +A +LI++MP +P   +W SL++ C    N++
Sbjct: 682 ML-RFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVE 740

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMN 544
           +   AA+      P  SG + +LSNIYA  G W + K+VR+ M  +G+ K PG S + +N
Sbjct: 741 LAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGIN 800

Query: 545 DQVQII 550
            +V I 
Sbjct: 801 KEVHIF 806



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 210/423 (49%), Gaps = 46/423 (10%)

Query: 28  LLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVF 87
           LL   A +D+L  Y ++     +H QII+   L  +  +   L+  Y   G MV  R VF
Sbjct: 50  LLQLRASDDLL-HYQNV-----VHGQIIV-WGLELDTYLSNILINLYSRAGGMVYARKVF 102

Query: 88  DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD-PDCYTYPCVLKACSG--SN 144
           +++  +N+V ++ ++ +  ++ +Y ++L V+        D P+ Y     ++ACSG    
Sbjct: 103 EKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGR 162

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
              +  Q+   +VK G D +++ G  L+  Y K G +  AR V + +P K  VTW +M++
Sbjct: 163 GRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMIS 222

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT---------------------- 242
           G  + GR   +L +  ++    + PD   ++++L + +                      
Sbjct: 223 GCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEM 282

Query: 243 NTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
           + S  NVL           +  ++F  + NKN++SW  +++ Y  N++  EA++L+  M 
Sbjct: 283 DASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMS 342

Query: 292 VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351
             G++P+  + +S+L +C  L AL  G ++H Y  +  L  +  + N+L+DMYAKC  LT
Sbjct: 343 KFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLT 402

Query: 352 EARTVFDQMRCQDVVSWTSMISAY---GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
           +AR VFD     DVV + +MI  Y   G   + ++A+ +F  M    + P  + FVS+L 
Sbjct: 403 DARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLR 462

Query: 409 ACS 411
           A +
Sbjct: 463 ASA 465



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 208/428 (48%), Gaps = 39/428 (9%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y   G +   R VFD +  K+ V +  +I   V     Y +L ++  +    
Sbjct: 185 VGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDN 244

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             PD Y    VL ACS    L  G QIH  +++ GL+ +    N L+  Y KCG +  A 
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAH 304

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS----- 240
           ++ N MP+K++++W ++++GY QN    EA+++   M    +KPD    +S+L S     
Sbjct: 305 KLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLH 364

Query: 241 ----------------------VTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIA 272
                                 VTN+        + +   +++F      ++V +N MI 
Sbjct: 365 ALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIE 424

Query: 273 VYANNSMP---AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
            Y+         EA++++  M    I P+ ++  S+L A   L++L L ++IH  + +  
Sbjct: 425 GYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYG 484

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           L  ++   +AL+D+Y+ C  L ++R VFD+M+ +D+V W SM + Y    +  +A+ LF 
Sbjct: 485 LNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFL 544

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGR 448
           ++ +S   PD   F ++++A  +   ++ G+ ++ +++    +  P I +   L+D+  +
Sbjct: 545 ELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITN--ALLDMYAK 602

Query: 449 AGKVEEAY 456
            G  E+A+
Sbjct: 603 CGSPEDAH 610



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 114/230 (49%), Gaps = 9/230 (3%)

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGD 311
           +++F K+  +NLVSW+ M++   ++ +  E++ ++L+        PN   ++S + AC  
Sbjct: 99  RKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSG 158

Query: 312 LSALLLGR----KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           L     GR    ++  ++ +     ++ +   L+D Y K G++  AR VFD +  +  V+
Sbjct: 159 LDGR--GRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVT 216

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           WT+MIS     G+ Y ++ LF +++   + PD     +VLSACS    LE G+     + 
Sbjct: 217 WTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHIL 276

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            +Y L         L+D   + G+V  A+ L   MP   N   W +L++ 
Sbjct: 277 -RYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMP-NKNIISWTTLLSG 324



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 78/155 (50%), Gaps = 11/155 (7%)

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           L+ +  L N L+++Y++ G +  AR VF++M  +++VSW++M+SA    G   +++ +F 
Sbjct: 75  LELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFL 134

Query: 390 KMLMSGL-CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR-----IEHFACLV 443
           +   +    P+     S + ACS  GL  +GR  + +   Q  LV       +     L+
Sbjct: 135 EFWRTRKDSPNEYILSSFIQACS--GL--DGRGRWMVFQLQSFLVKSGFDRDVYVGTLLI 190

Query: 444 DLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           D   + G ++ A  +   +P E +   W ++++ C
Sbjct: 191 DFYLKDGNIDYARLVFDALP-EKSTVTWTTMISGC 224


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 174/555 (31%), Positives = 302/555 (54%), Gaps = 35/555 (6%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           PD      LHA  +++    SN  +   L+  Y    ++   R VFD++ +++ V +N +
Sbjct: 117 PDDNLGMCLHAHAVVDG-FDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTM 175

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           I   V N  Y D++ V+K+M   G   D  T   VL A +    + VG+ I C  +K+G 
Sbjct: 176 ITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGF 235

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
            ++ +   GL++++ KC  +  AR +   +   D+V++N++++G++ NG  + A+   RE
Sbjct: 236 HFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRE 295

Query: 222 MESLRIKPDADTMASLLP----------------------SVTNTSPENVLSV------- 252
           +     +  + TM  L+P                      ++   S    L+        
Sbjct: 296 LLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNE 355

Query: 253 ----KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
               +++F +   K + +WN MI+ YA + +   A+ L+ +M      PN +++ S+L A
Sbjct: 356 IDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSA 415

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  L AL  G+ +H+ ++ K L+ N+ +  AL+DMYAKCG+++EA  +FD    ++ V+W
Sbjct: 416 CAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTW 475

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            +MI  YG+ G G +A+ LF++ML  G  P S+ F+SVL ACSHAGL+ EG   F  M  
Sbjct: 476 NTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVN 535

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
           +Y++ P  EH+AC+VD+LGRAG++E+A + I++MP+EP   +WG+L+ AC ++ + ++  
Sbjct: 536 KYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLAR 595

Query: 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           +A++ +F L P   GYYVLLSNIY+    +     VR+ +  + + K PG + +E+N   
Sbjct: 596 VASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTP 655

Query: 548 QIIALPLRSSKCLTT 562
            +     RS    T+
Sbjct: 656 HVFVCGDRSHSQTTS 670



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 133/518 (25%), Positives = 239/518 (46%), Gaps = 58/518 (11%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY- 105
           L + HAQ+I N + H   ++  KL +     G     R +F  +   ++  FNVLI+ + 
Sbjct: 24  LAETHAQLIRNGYQHDLATV-TKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFS 82

Query: 106 ----VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
                ++  +Y   H+ KN ++    PD +TY   + A    N   +G+ +H   V  G 
Sbjct: 83  FSPDASSISFYT--HLLKNTTL---SPDNFTYAFAISASPDDN---LGMCLHAHAVVDGF 134

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           D NLF  + LV +Y K   +  AR+V + MP +D V WN+M+ G  +N  +D+++ V ++
Sbjct: 135 DSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKD 194

Query: 222 MESLRIKPDADTMASLLPSVTNTSP---------------------------------EN 248
           M +  ++ D+ T+A++LP+V                                      E+
Sbjct: 195 MVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCED 254

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           V + + +F  +   +LVS+N +I+ ++ N     AV  + ++ V G   ++ ++  ++P 
Sbjct: 255 VDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPV 314

Query: 309 CGDLSALLLGRKIHRYVERKK--LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
                 L L   I  +  +    LQP++    AL  +Y++   +  AR +FD+   + V 
Sbjct: 315 SSPFGHLHLACCIQGFCVKSGTILQPSV--STALTTIYSRLNEIDLARQLFDESSEKTVA 372

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           +W +MIS Y  SG    A++LF +M+ +   P+ +   S+LSAC+  G L  G+   +++
Sbjct: 373 AWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLI 432

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
             +  L   I     L+D+  + G + EA  L   +  E N   W +++    L+   D 
Sbjct: 433 KSK-NLEQNIYVSTALIDMYAKCGNISEASQLF-DLTSEKNTVTWNTMIFGYGLHGYGDE 490

Query: 487 GILAADHIFHLAPNQSGYYVLLSNIYA--KAG--RWGD 520
            +   + + HL   Q      LS +YA   AG  R GD
Sbjct: 491 ALKLFNEMLHLG-FQPSSVTFLSVLYACSHAGLVREGD 527


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 183/518 (35%), Positives = 294/518 (56%), Gaps = 11/518 (2%)

Query: 34  CNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG-ACGQMVDTR-HVFDEIT 91
           C  +L+    + T K++HA ++    L S+P I  KL+     +    +D    +F    
Sbjct: 8   CLSLLNICKSLTTFKQIHANVL-KLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTP 66

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP-DCYTYPCVLKACSGSNSLLVGL 150
           N +V   N LIR    +    D+L  +  M  + F P D +++  ++KA +   S+ VG+
Sbjct: 67  NPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGI 126

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
           Q+HC  +  GLD +LF G  L++MYG+CG +  AR+V ++MP  + + WN+MV    + G
Sbjct: 127 QLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGG 186

Query: 211 RFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVM 270
                 D+    E   + P  + M+  +     T    +   +EMFL++  K+ VSW+ M
Sbjct: 187 ------DMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTM 240

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
           I  +A+N    EA   + +++  G+ PN  S+  VL AC    AL  G+ +H ++E+  L
Sbjct: 241 IVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGL 300

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQ-MRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
              + + NAL+D Y+KCG++  A+ VF++ M  +++VSWTSM++A  M G G +A+ +F 
Sbjct: 301 AWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFH 360

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           KM  SG+ PD IAF+S+L ACSHAGL+E+G  YF  M   Y + P IEH+ C+VDL GRA
Sbjct: 361 KMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRA 420

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G++++AY+ + QMP+     IW +L+ AC ++ ++ +     + +  L PN S  +VLLS
Sbjct: 421 GQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLS 480

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQV 547
           N YA AG+W D   VR+ M  + I K PG S+   D++
Sbjct: 481 NAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKI 518



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 176/390 (45%), Gaps = 28/390 (7%)

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV--AMYGKCGCLKEARRVLN 189
           T P  L   +   SL    QIH +V+K+GL+ + F    L+          L  A R+  
Sbjct: 4   TEPLCLSLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFR 63

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK-PDADTMASLLPSVTNTSPEN 248
             P+ DV   N+++ G  ++ R  ++L    EM       PD+ + A ++ +  N     
Sbjct: 64  YTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVR 123

Query: 249 V---LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
           V   L  + +   LD    V    +I++Y        A  ++ +M     EPNAI+  ++
Sbjct: 124 VGIQLHCQALVHGLDTHLFVG-TTLISMYGECGFVGFARKVFDEMP----EPNAIAWNAM 178

Query: 306 LPAC---GDLSALLLGRKIHRYVERKKLQP--NLRLENALVDMYAKCGSLTEARTVFDQM 360
           + AC   GD+     GR++        L P  NL   N ++  Y K G L  AR +F +M
Sbjct: 179 VTACCRGGDMKG---GRELF------DLMPVRNLMSWNVMLAGYTKAGELELAREMFLEM 229

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             +D VSW++MI  +  +G   +A + F ++   G+ P+  +   VLSAC+ AG LE G+
Sbjct: 230 PMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGK 289

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
                + E+  L   +     L+D   + G V  A  + +++  E N   W S++AA  +
Sbjct: 290 ILHGFI-EKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAM 348

Query: 481 YSNMD--IGILAADHIFHLAPNQSGYYVLL 508
           + + +  IGI        + P++  +  LL
Sbjct: 349 HGHGEEAIGIFHKMEESGIRPDEIAFISLL 378


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 181/499 (36%), Positives = 280/499 (56%), Gaps = 43/499 (8%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH--VFDEITNKNVVFFNVLIRS 104
           +K++HA II N  L     +  KL+R        + +    VF ++   N   +  +IR 
Sbjct: 58  IKQVHAHIIRNG-LSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRG 116

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDY 163
           Y    L  ++ + Y  M   G  P  +T+  + KAC  + ++ +G Q+H   + +G    
Sbjct: 117 YALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFAS 176

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           +L+ GN ++ +Y KCG L  AR+V ++M  +DVV+W  ++  YA+ G          +ME
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYG----------DME 226

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
           S                              +F  L +K++V+W  M+  YA N  P EA
Sbjct: 227 S---------------------------ASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEA 259

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP--NLRLENALV 341
           ++ + +M+  G+E + +++A V+ AC  L A+     I    ER    P  N+ + +AL+
Sbjct: 260 LEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALI 319

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           DMY+KCGS  EA  VF+ M+ ++V S++SMI  Y M G+ + A+ LF  ML + + P+ +
Sbjct: 320 DMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKV 379

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
            F+ +LSACSHAGL+E+GR  F  M + + + P  +H+AC+VDLLGRAG +EEA DL+K 
Sbjct: 380 TFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKT 439

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
           MPMEPN  +WG+L+ AC ++ N DI  +AA+ +F L PN  G Y+LLSNIYA AGRW +V
Sbjct: 440 MPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEV 499

Query: 522 KRVRKFMNSKGIKKMPGAS 540
            ++RK +  KG KK PG S
Sbjct: 500 SKLRKVIREKGFKKNPGCS 518


>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 187/540 (34%), Positives = 287/540 (53%), Gaps = 48/540 (8%)

Query: 53  QIIINQHLHSNPSI--------GLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           Q I N  L SNP             L+++Y   G   +  ++F+EI  ++VV +  +I  
Sbjct: 24  QWISNSTLQSNPPFTPEGPSVWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVG 83

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
           + +   Y+ A  ++  M      P+ +T   VLKAC G  +L  G   H    K G+D +
Sbjct: 84  FTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRS 143

Query: 165 LFNGNGLVAMYG-KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           ++  N L+ MY   C  + +A  V ND+P K  V+W +++AG+   G     L   R+M 
Sbjct: 144 VYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQML 203

Query: 224 SLRIKP-----------------------------------DADTMASLLPSVTNTSPEN 248
              + P                                   DA  M S+L      +   
Sbjct: 204 LEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCN--Y 261

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           +   K  F +L  KNL++WN +IA Y   S  +E++ L+ QM   G +PN  +  S+  A
Sbjct: 262 LCDAKRCFGELTEKNLITWNTLIAGY-ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAA 320

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C +L+ L  G+++H  + R+    N+ L N+L+DMYAKCGS++++  +F  M  +D+VSW
Sbjct: 321 CANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSW 380

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
           T+M+  YG  G G +AV LF +M+ SG+ PD I F+ VL  CSHAGL+++G  YF+ M E
Sbjct: 381 TTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLE 440

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
            Y + P  E + C+VDLLGRAG+VEEA+ L++ MP EP+E +WG+L+ AC  Y   ++G 
Sbjct: 441 DYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGALLGACKAYKLSNLGN 500

Query: 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           LAA  +    PN +G Y+LLS IYA  G+WG+  ++RK M     KK  G S +E+ ++V
Sbjct: 501 LAAQRVLDRRPNMAGTYLLLSKIYAAEGKWGEFAKMRKLMKGMNKKKEVGKSWIEIRNEV 560



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 100/183 (54%), Gaps = 2/183 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++HA +     LH +  +   ++  Y  C  + D +  F E+T KN++ +N LI  Y  
Sbjct: 231 KQIHAAVT-KYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYER 289

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +    ++L ++  M   G+ P+C+T+  +  AC+    L  G Q+H  +V+ G D N+  
Sbjct: 290 SD-SSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVAL 348

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY KCG + ++ ++  DMP +D+V+W +M+ GY  +G   EA+ +  EM    I
Sbjct: 349 INSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGI 408

Query: 228 KPD 230
           +PD
Sbjct: 409 QPD 411


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 180/531 (33%), Positives = 291/531 (54%), Gaps = 34/531 (6%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           LHA +    H H++  +G  L+  Y   G +   RHVFD+I  K++V +  ++  Y  N 
Sbjct: 158 LHACVYKLGH-HADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENC 216

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
            Y ++L ++  M + G+ P+ +T    LK+C G  +  VG  +H   +K   D++LF G 
Sbjct: 217 FYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGI 276

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            L+ +Y K G + +A+R+  +MP  D++ W+ M+A YAQ+ R  EALD+   M    + P
Sbjct: 277 ALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVP 336

Query: 230 DADTMASLLPSVTNTSP-----------------ENVL----------------SVKEMF 256
           +  T AS+L +  ++                    NV                 +  ++F
Sbjct: 337 NNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLF 396

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
            +L ++N V+WN +I  Y        A++L+  M  H ++P  ++ +SVL A   L+AL 
Sbjct: 397 EELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALE 456

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
            G +IH    +     +  + N+L+DMYAKCG + +AR  FD+M  +D VSW +MI  Y 
Sbjct: 457 PGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYS 516

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
           M G   +A+ LF  M  +   P+ + FV VLSACS+AGLL +G+ +F+ M++ Y + P I
Sbjct: 517 MHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCI 576

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           EH+ C+V LLGR G+ +EA  LI ++  +P+  +W +L+ AC ++  +D+G + A H+  
Sbjct: 577 EHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLE 636

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQV 547
           + P+    +VLLSN+YA AGRW +V  VRK+M  K ++K PG S   N  V
Sbjct: 637 MEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGV 687



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 212/450 (47%), Gaps = 46/450 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y     + D   +FDE+   N + F  L + Y  ++ ++ ALH    +   G + +
Sbjct: 76  LLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVN 135

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            + +  +LK     +   +   +H  V K+G   + F G  L+  Y   G +  AR V +
Sbjct: 136 PFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFD 195

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
           D+  KD+V+W  MVA YA+N  ++E+L +  +M  +  KP+  T++  L S       NV
Sbjct: 196 DICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNV 255

Query: 250 ---------------------------------LSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                            +  + +F ++   +L+ W++MIA YA 
Sbjct: 256 GKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQ 315

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           +    EA+DL+L+M    + PN  + ASVL AC    +L LG++IH  V +  L  N+ +
Sbjct: 316 SDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFV 375

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            NA++D+YAKCG +  +  +F+++  ++ V+W ++I  Y   G G  A+ LF+ ML   +
Sbjct: 376 SNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDM 435

Query: 397 CPDSIAFVSVLSACSHAGLLEEG----RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
            P  + + SVL A +    LE G        K M  +  +V        L+D+  + G++
Sbjct: 436 QPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVAN-----SLIDMYAKCGRI 490

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
            +A     +M  + +E  W +++   C YS
Sbjct: 491 NDARLTFDKMN-KRDEVSWNAMI---CGYS 516


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 179/489 (36%), Positives = 281/489 (57%), Gaps = 40/489 (8%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +N  +R       +  AL +Y  M  HG  P+ +T+P  LK+C+  +  ++G Q H  + 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVL--NDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           KVG  +  F   GL++MY K   +  AR+V   N    K  V +N++V+GY  N +  EA
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENV------------------LSV----- 252
           + + R+M    +  ++ T+  L+P+    SP N+                  +SV     
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACV--SPINLELGSSLHCSTLKYGFDSDVSVVNCFI 194

Query: 253 ------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                       +++F ++  K L+SWN M++ YA N +    ++LY  M+++G+ P+ +
Sbjct: 195 TMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPV 254

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           ++  VL +C +L A  +G ++   ++      N  L NAL++MYA+CG+LT+A+ VFD M
Sbjct: 255 TLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGM 314

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             + +VSWT++I  YGM G G  AV LF +M+ SG+ PD  AFV VLSACSHAGL ++G 
Sbjct: 315 PERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGL 374

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
            YFK+M   Y+L P  EH++C+VDLLGRAG+++EA  LI+ MP++P+  +WG+L+ AC +
Sbjct: 375 EYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKI 434

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           + N+++  LA + +  L P   GYYVLLSNIY+ A     V R+R  M  K +KK PG S
Sbjct: 435 HKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCS 494

Query: 541 -VEMNDQVQ 548
            VE+  +V 
Sbjct: 495 YVELKGRVH 503



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 184/393 (46%), Gaps = 40/393 (10%)

Query: 78  GQMVD-TRHVFDE--ITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYP 134
           G +VD  R VF+E   + K  V +N L+  YV+N    +A+ +++ M+  G   +  T  
Sbjct: 97  GSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLL 156

Query: 135 CVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK 194
            ++ AC    +L +G  +HCS +K G D ++   N  + MY KCG +  A+++ ++MP K
Sbjct: 157 GLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVK 216

Query: 195 DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE------- 247
            +++WN+MV+GYAQNG     L++ R M+   + PD  T+  +L S  N   +       
Sbjct: 217 GLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVE 276

Query: 248 --------------------------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
                                     N+   + +F  +  + LVSW  +I  Y  +    
Sbjct: 277 FKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGE 336

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENAL 340
            AV L+ +M   GIEP+  +   VL AC        G +  + ++R  +L+P     + +
Sbjct: 337 IAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCM 396

Query: 341 VDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           VD+  + G L EA+T+ + M  + D   W +++ A  +      A   F +++   L P+
Sbjct: 397 VDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE--LEPE 454

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           +I +  +LS         +G    +IM ++ KL
Sbjct: 455 NIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKL 487



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 125/267 (46%), Gaps = 22/267 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
            +  Y  CG +   + +FDE+  K ++ +N ++  Y  N L  + L +Y+NM ++G  PD
Sbjct: 193 FITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPD 252

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   VL +C+   +  VG ++   +   G   N F  N L+ MY +CG L +A+ V +
Sbjct: 253 PVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFD 312

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            MP + +V+W +++ GY  +G  + A+ + +EM    I+PD      +L + ++     +
Sbjct: 313 GMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAG---L 369

Query: 250 LSVKEMFLKLDNKNLV------SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
                 + K+  +N         ++ M+ +        EA  L   +E   I+P+     
Sbjct: 370 TDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTL---IESMPIKPDGAVWG 426

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKL 330
           ++L AC          KIH+ VE  +L
Sbjct: 427 ALLGAC----------KIHKNVELAEL 443



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 8/148 (5%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           SNP +   L+  Y  CG +   + VFD +  + +V +  +I  Y  +     A+ ++K M
Sbjct: 286 SNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEM 345

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG----NGLVAMYGK 177
              G +PD   + CVL ACS +     GL+    + +   +Y L  G    + +V + G+
Sbjct: 346 IRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKR---NYQLEPGPEHYSCMVDLLGR 402

Query: 178 CGCLKEARRVLNDMPSK-DVVTWNSMVA 204
            G LKEA+ ++  MP K D   W +++ 
Sbjct: 403 AGRLKEAQTLIESMPIKPDGAVWGALLG 430


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 174/499 (34%), Positives = 289/499 (57%), Gaps = 3/499 (0%)

Query: 51  HAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYL 110
           HA+ + ++    +      ++  Y   G + D R +FD + +++ V +N +I  +  N  
Sbjct: 76  HARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGR 135

Query: 111 YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG 170
              AL V+  M   G  P  YT+  VL AC+    L  G QIH  ++   L  N+F  N 
Sbjct: 136 GGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNA 195

Query: 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
           L  +Y +CG + +ARR+ + M  ++VVTWN M++GY +N + ++ +D+  EM+   +KPD
Sbjct: 196 LTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPD 255

Query: 231 ADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
             T +S+L +        +   +++F ++  K+ V W +MI   A N    +A+ L+ +M
Sbjct: 256 QVTASSVLGAYIQAG--YIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEM 313

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
            +    P+  +++SV+ +C  L++L  G+ +H       +  +L + +ALVDMY KCG  
Sbjct: 314 LLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVT 373

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
            +A T+F  M+ ++VVSW SMI  Y ++GQ  +A++L+  ML   L PDS+ FV VLSAC
Sbjct: 374 RDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSAC 433

Query: 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI 470
            HAGL+EEG+ YF  M++Q+ L P  +H+AC+V+L GR+G +++A DLI  M  EPN  I
Sbjct: 434 VHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLI 493

Query: 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530
           W ++++ C +  ++  G +AA  +  L P  +  Y++LSN+YA  GRW DV  +R  M S
Sbjct: 494 WTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKS 553

Query: 531 KGIKKMPGAS-VEMNDQVQ 548
           K +KK    S +E++++V 
Sbjct: 554 KHVKKFSAYSWIEIDNEVH 572



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 184/377 (48%), Gaps = 52/377 (13%)

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           + F  N L+ +Y K G +  AR++ ++M  +D  +WN+M++ YA++G           +E
Sbjct: 57  DTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGL----------VE 106

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
            LR+                           +F  + +++ VS+N +I+ +A N     A
Sbjct: 107 DLRV---------------------------IFDNMPSRDSVSYNTVISGFAGNGRGGPA 139

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
           + ++L+M+  G++P   +  SVL AC  L  L  G++IH  +    L  N+ + NAL D+
Sbjct: 140 LGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDL 199

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
           YA+CG + +AR +FD+M  ++VV+W  MIS Y  + Q    + LF +M +S L PD +  
Sbjct: 200 YARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTA 259

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
            SVL A   AG ++E R  F  + E+ ++   I    C      + GK E+A  L  +M 
Sbjct: 260 SSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGC-----AQNGKEEDALLLFSEML 314

Query: 464 ME---PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS----NIYAKAG 516
           +E   P+     S+V++C   +++  G +     F +  N     +L+S    ++Y K G
Sbjct: 315 LENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDD---LLVSSALVDMYCKCG 371

Query: 517 RWGDVKRVRKFMNSKGI 533
              D   +   M ++ +
Sbjct: 372 VTRDAWTIFSTMQTRNV 388



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 185/454 (40%), Gaps = 119/454 (26%)

Query: 24  TQYTLLSG-DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD 82
           T+YT +S  +AC  +LD    ++  K++H +III  +L  N  +   L   Y  CG++  
Sbjct: 154 TEYTHVSVLNACTQLLD----LRRGKQIHGRIIIC-NLGGNVFVCNALTDLYARCGEIDQ 208

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
            R +FD +  +NVV +N++I  Y+ N      + ++  M V    PD  T   VL A   
Sbjct: 209 ARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGA--- 265

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
                                           Y + G + EAR+V  ++  KD V W  M
Sbjct: 266 --------------------------------YIQAGYIDEARKVFGEIREKDEVCWTIM 293

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP---------------- 246
           + G AQNG+ ++AL +  EM     +PD  T++S++ S    +                 
Sbjct: 294 IVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGV 353

Query: 247 -ENVL---SVKEMFLK-------------LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
            +++L   ++ +M+ K             +  +N+VSWN MI  YA N    EA+ LY  
Sbjct: 354 NDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYEN 413

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M    ++P++++   VL AC           +H                         G 
Sbjct: 414 MLEENLKPDSVTFVGVLSAC-----------VH------------------------AGL 438

Query: 350 LTEARTVFDQMRCQDVVS-----WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404
           + E +  F  M  Q  +      +  M++ +G SG    AV L S M      P+S+ + 
Sbjct: 439 VEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQE---PNSLIWT 495

Query: 405 SVLSACSHAGLLEEGRYYFKIMTE--QYKLVPRI 436
           +VLS C   G ++ G    + + E   +  VP I
Sbjct: 496 TVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYI 529



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 52/210 (24%)

Query: 309 CGDLSALLLGRKIHRYVERKKLQPN-LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           C   S +   +++  ++     +PN   + N L+++YAK G ++ AR +FD+M  +D  S
Sbjct: 32  CFRASDVDQAKRLKSHMHLHLFKPNDTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFS 91

Query: 368 WTSMISAYGMS-------------------------------GQGYDAVALFSKMLMSGL 396
           W +M+S Y  S                               G+G  A+ +F +M   GL
Sbjct: 92  WNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGL 151

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI-------EHFAC--LVDLLG 447
            P     VSVL+AC+    L  G+          ++  RI         F C  L DL  
Sbjct: 152 KPTEYTHVSVLNACTQLLDLRRGK----------QIHGRIIICNLGGNVFVCNALTDLYA 201

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           R G++++A  L  +M +  N   W  +++ 
Sbjct: 202 RCGEIDQARRLFDRMVIR-NVVTWNLMISG 230


>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 187/540 (34%), Positives = 287/540 (53%), Gaps = 48/540 (8%)

Query: 53  QIIINQHLHSNPSI--------GLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           Q I N  L SNP             L+++Y   G   +  ++F+EI  ++VV +  +I  
Sbjct: 24  QWISNSTLQSNPPFTPEGPSVWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVG 83

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
           + +   Y+ A  ++  M      P+ +T   VLKAC G  +L  G   H    K G+D +
Sbjct: 84  FTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRS 143

Query: 165 LFNGNGLVAMYG-KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           ++  N L+ MY   C  + +A  V ND+P K  V+W +++AG+   G     L   R+M 
Sbjct: 144 VYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQML 203

Query: 224 SLRIKP-----------------------------------DADTMASLLPSVTNTSPEN 248
              + P                                   DA  M S+L      +   
Sbjct: 204 LEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCN--Y 261

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           +   K  F +L  KNL++WN +IA Y   S  +E++ L+ QM   G +PN  +  S+  A
Sbjct: 262 LCDAKRCFGELTEKNLITWNTLIAGY-ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAA 320

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C +L+ L  G+++H  + R+    N+ L N+L+DMYAKCGS++++  +F  M  +D+VSW
Sbjct: 321 CANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSW 380

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
           T+M+  YG  G G +AV LF +M+ SG+ PD I F+ VL  CSHAGL+++G  YF+ M E
Sbjct: 381 TTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLE 440

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
            Y + P  E + C+VDLLGRAG+VEEA+ L++ MP EP+E +WG+L+ AC  Y   ++G 
Sbjct: 441 DYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGALLGACKAYKLSNLGN 500

Query: 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           LAA  +    PN +G Y+LLS IYA  G+WG+  ++RK M     KK  G S +E+ ++V
Sbjct: 501 LAAQRVLDRRPNMAGTYLLLSKIYAAEGKWGEFAKMRKLMKGMNKKKEVGKSWIEIRNEV 560



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 100/183 (54%), Gaps = 2/183 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++HA +     LH +  +   ++  Y  C  + D +  F E+T KN++ +N LI  Y  
Sbjct: 231 KQIHAAVT-KYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYER 289

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +    ++L ++  M   G+ P+C+T+  +  AC+    L  G Q+H  +V+ G D N+  
Sbjct: 290 SD-SSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVAL 348

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY KCG + ++ ++  DMP +D+V+W +M+ GY  +G   EA+ +  EM    I
Sbjct: 349 INSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGI 408

Query: 228 KPD 230
           +PD
Sbjct: 409 QPD 411


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 193/566 (34%), Positives = 293/566 (51%), Gaps = 77/566 (13%)

Query: 48  KKLHAQII---INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           K+LHA  I      HL   P    KL+  Y +   + D   +       N + +N+LI S
Sbjct: 61  KQLHAHTISLGFENHLVLVP----KLVTFYSSFSLLADAHTITVNSDIVNPLPWNLLISS 116

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV-VKVGLDY 163
           YVNN L+ +AL  Y+ M   G  PD +TYP VLKAC     L  G ++H S+    G  +
Sbjct: 117 YVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRW 176

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD---------------------------- 195
           NL+  N LV+MYGK G L  ARR+ N MP +D                            
Sbjct: 177 NLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMR 236

Query: 196 -------VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM-----------ASL 237
                  ++TWN++  G  Q   F  AL++  +M    I  D   M           A  
Sbjct: 237 LAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIK 296

Query: 238 LPSVTNTSP----------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
           L +V + S                       +++     +F  +  K+L +WN M++ Y 
Sbjct: 297 LGTVIHASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYT 356

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK-LQPNL 334
           +     EA  L+ +M   GIEPN +++AS+LP C  ++ L  G++ H Y+ R++  +  L
Sbjct: 357 HMDRSEEASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYL 416

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            L N+LV+MYA+ G +  A+ VFD +R +D V++TS+I+ YG+ G+G  A+ LF +M+  
Sbjct: 417 LLWNSLVEMYARSGKVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKH 476

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
            + PD +  V+VLSACSH+GL+ EG   F+ M+  Y +VP +EHF+C+VDL GRAG + +
Sbjct: 477 RIKPDQVTMVAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNK 536

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A  +I  MP  P   +W +LV AC ++ N +IG  AA+ +  + P   GYYVL++N++A 
Sbjct: 537 AKKVITSMPYRPTTAMWATLVGACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAA 596

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS 540
           AGRW  +  VR +M   G++K PG +
Sbjct: 597 AGRWSKLAEVRTYMRDLGVRKAPGCT 622



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 165/398 (41%), Gaps = 69/398 (17%)

Query: 127 DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR 186
           D   ++   +L +C+   SL  G Q+H   + +G + +L     LV  Y     L +A  
Sbjct: 38  DAILHSISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHT 97

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT---- 242
           +  +    + + WN +++ Y  NG   EAL   REM    ++PD  T  S+L +      
Sbjct: 98  ITVNSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLD 157

Query: 243 -------------------NTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIA 272
                              N    N L           + + +F ++  ++ VSWN +I+
Sbjct: 158 LDFGREVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIIS 217

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASV--------------------------- 305
            YA+  +  EA +L+ +M + G E N I+  ++                           
Sbjct: 218 NYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDL 277

Query: 306 --------LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
                   L AC  + A+ LG  IH    R        + NAL+ MY++C  L  A  +F
Sbjct: 278 DPVAMIIGLGACSHIGAIKLGTVIHASAIRSCFDGFDNVRNALITMYSRCKDLRHADILF 337

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
             ++ + + +W SM+S Y    +  +A  LF +ML SG+ P+ +   S+L  C+    L+
Sbjct: 338 KSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILPHCARVANLQ 397

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           +G+ +   +  +      +  +  LV++  R+GKV  A
Sbjct: 398 QGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSA 435



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 88/176 (50%), Gaps = 1/176 (0%)

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           S++S+L +C +L +L  G+++H +      + +L L   LV  Y+    L +A T+    
Sbjct: 43  SISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVNS 102

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
              + + W  +IS+Y  +G   +A++ + +M+  G+ PD+  + SVL AC     L+ GR
Sbjct: 103 DIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGR 162

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
              + +   Y     +     LV + G+ G+++ A  L  QMP E +   W  +++
Sbjct: 163 EVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMP-ERDAVSWNGIIS 217


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 174/505 (34%), Positives = 286/505 (56%), Gaps = 35/505 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  YGA   + D R VF+E+  ++VV + ++I ++     + + L     M   G  P+
Sbjct: 163 LINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPN 222

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   +L AC    ++  GL ++  V + G++ ++   N L+ MY KCGC+ +A +   
Sbjct: 223 KITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFK 282

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP--- 246
            MP ++  +WN+++ G+ QNG+  EAL +  EM S  + PD  T+ S+L +         
Sbjct: 283 GMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQ 342

Query: 247 -------------------ENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYAN 276
                              +N L           + + +F  +  +++VSW  M+  Y  
Sbjct: 343 GRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVK 402

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
                 A +L+  M+V  +  + +++ S+L AC  L AL  GR+IH Y++ K ++ ++ L
Sbjct: 403 GLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMWL 462

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML-MSG 395
           E+ALVDMYAKCG +  A  +F +MR +  ++W +MI      GQG +AVALF ++L +  
Sbjct: 463 ESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLKLRD 522

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
             PD+I    VL AC+H G+++EG +YF +M     +VP  EH+ C+VDLLGRAG ++EA
Sbjct: 523 PKPDAITLKVVLCACTHVGMVDEGLHYFNLML-TLGIVPDNEHYGCIVDLLGRAGLLDEA 581

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
           Y+ I++MP++PN  IWGSL+AAC ++  M++G +   HI  LAPN  G +VL+SN++A+ 
Sbjct: 582 YNFIQKMPIQPNPVIWGSLLAACRVHHRMELGKIIGQHIIDLAPNDVGAHVLISNLHAEE 641

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS 540
           G+W DV++VR  M S+ ++K PG S
Sbjct: 642 GQWDDVEQVRGMMGSRRVEKSPGHS 666



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/473 (28%), Positives = 229/473 (48%), Gaps = 45/473 (9%)

Query: 33  ACNDILDKYPDI----KTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD---TRH 85
           AC D L  + D       L +LH +++   HL S+P +  +L+    +     D    R 
Sbjct: 16  ACRDSLLAHLDACASRANLAELHGRLV-RAHLGSDPCVAGRLVTLLASPVSRHDMPYARK 74

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VFD +     + +N +IR Y + +   DAL +++ M   G  PD YT   V ++ +   S
Sbjct: 75  VFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSPDNYTMAAVAQSSAAFAS 134

Query: 146 L---LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
                 G  +H  V ++G   +LF  +GL+  YG    +++AR+V  +M  +DVV+W  M
Sbjct: 135 WKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLM 194

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS----------------VTNTSP 246
           ++ +AQ G++D  L    EM+S   KP+  T+ SLL +                V     
Sbjct: 195 ISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGI 254

Query: 247 ENVLSVK-----------------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
           E  + ++                 + F  +  +N  SWN +I  +  N    EA+ ++ +
Sbjct: 255 EADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEE 314

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M   G+ P+ I++ SVL     L  L  GR +H Y++  ++  ++ L+N+L++MYAKCG 
Sbjct: 315 MLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGD 374

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           +  A  +F+ M  +D+VSWT+M+  Y    Q   A  LF  M +  +    +A VS+LSA
Sbjct: 375 MAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSA 434

Query: 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           CS  G L++GR     + E+  +   +   + LVD+  + G ++ A ++  +M
Sbjct: 435 CSQLGALDKGREIHSYIKEK-SVRTDMWLESALVDMYAKCGCIDAAAEIFSRM 486



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 126/248 (50%), Gaps = 7/248 (2%)

Query: 231 ADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
           A  + +LL S    S  ++   +++F ++     + WN MI  Y +   P +A++L+  M
Sbjct: 53  AGRLVTLLAS--PVSRHDMPYARKVFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAM 110

Query: 291 EVHGIEPNAISVASVLPACGDLSAL---LLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
              G+ P+  ++A+V  +    ++      G  +H  V+R     +L + + L++ Y   
Sbjct: 111 RRSGVSPDNYTMAAVAQSSAAFASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGAS 170

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
            S+ +AR VF++M  +DVVSWT MISA+   GQ  + +    +M   G  P+ I  +S+L
Sbjct: 171 KSVEDARKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLL 230

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
           SAC     +++G + +    ++Y +   ++    L+ +  + G + +A+   K MP+  N
Sbjct: 231 SACGQVRAVDKGLWVYA-RVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIR-N 288

Query: 468 ERIWGSLV 475
            + W +L+
Sbjct: 289 TKSWNTLI 296



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 154/330 (46%), Gaps = 16/330 (4%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++  + LH   I +  +H +  +   L+  Y  CG M     +F+ +  +++V +  ++
Sbjct: 339 DLQQGRYLH-NYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMV 397

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             YV    +  A +++ +M V            +L ACS   +L  G +IH  + +  + 
Sbjct: 398 CGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVR 457

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            +++  + LV MY KCGC+  A  + + M  K  + WN+M+ G A  G+  EA+ +  ++
Sbjct: 458 TDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQL 517

Query: 223 ESLRI-KPDADTMASLLPSVTNTS-PENVLSVKEMFLKL----DNKNLVSWNVMIAVYAN 276
             LR  KPDA T+  +L + T+    +  L    + L L    DN++   +  ++ +   
Sbjct: 518 LKLRDPKPDAITLKVVLCACTHVGMVDEGLHYFNLMLTLGIVPDNEH---YGCIVDLLGR 574

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
             +  EA +   +M    I+PN +   S+L AC     + LG+ I +++    L PN   
Sbjct: 575 AGLLDEAYNFIQKMP---IQPNPVIWGSLLAACRVHHRMELGKIIGQHI--IDLAPNDVG 629

Query: 337 ENALV-DMYAKCGSLTEARTVFDQMRCQDV 365
            + L+ +++A+ G   +   V   M  + V
Sbjct: 630 AHVLISNLHAEEGQWDDVEQVRGMMGSRRV 659


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 175/523 (33%), Positives = 294/523 (56%), Gaps = 35/523 (6%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S  ++G  LM  Y    +  D   VFD + +++V+ +N +I    +N LY  A+ ++  M
Sbjct: 229 SQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRM 288

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
            + G + D  T   VL AC+  + L +G  +H   VK G        N L+ MY  C   
Sbjct: 289 WLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDW 348

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
           +   ++  +M  K+VV+W +M+  Y + G +D+   + +EM     +PD   + S L + 
Sbjct: 349 RSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAF 408

Query: 242 TNT----------------SPENVLSVK----EMFLKLDN-------------KNLVSWN 268
                                E VL+V     EM++K  N             K+++SWN
Sbjct: 409 AGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWN 468

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
            +I  Y+ N++  EA  L+ +M +  + PNA+++  +LPA   LS+L  GR++H Y  R+
Sbjct: 469 TLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRR 527

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
               +  + NAL+DMY KCG+L  AR +FD++  ++++SWT M++ YGM G+G DA+ALF
Sbjct: 528 GYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALF 587

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
            +M +SG+ PD+ +F ++L ACSH+GL +EG  +F  M +++K+ PR++H+ C+VDLL  
Sbjct: 588 EQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLIN 647

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508
            G ++EAY+ I  MP+EP+  IW SL+  C ++ N+ +    A+ +F L P  +GYYVLL
Sbjct: 648 TGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLL 707

Query: 509 SNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           +NIYA+A RW  V++++  +  +G+++  G S +E   +V + 
Sbjct: 708 ANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVF 750



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 194/389 (49%), Gaps = 35/389 (8%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITN-KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
           +G KL+  Y  CG + + R VFDE+    +V  +  L+  Y       + + +++ M   
Sbjct: 131 LGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCC 190

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G  PD YT  CVLK  +G  S+  G  +H  + K+G       GN L+A Y K    K+A
Sbjct: 191 GVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDA 250

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS---- 240
             V + MP +DV++WNSM++G   NG +D+A+++   M     + D+ T+ S+LP+    
Sbjct: 251 ILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAEL 310

Query: 241 ------------------VTNTSPENVL-----------SVKEMFLKLDNKNLVSWNVMI 271
                             ++ TS  NVL           S  ++F  +  KN+VSW  MI
Sbjct: 311 HLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMI 370

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
             Y    +  +   L+ +M + G  P+  ++ S L A      L  G+ +H Y  R  ++
Sbjct: 371 TSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGME 430

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
             L + NAL++MY KCG++ EA+ +FD +  +D++SW ++I  Y  +    +A +LF++M
Sbjct: 431 KVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEM 490

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           L+  L P+++    +L A +    LE GR
Sbjct: 491 LLQ-LRPNAVTMTCILPAAASLSSLERGR 518


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 180/522 (34%), Positives = 294/522 (56%), Gaps = 36/522 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G + D   VFDEI   ++V +N +I   V +  ++ AL + + M+  G  P+
Sbjct: 152 LVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPN 211

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +T    LKAC+G     +G Q+H S++K+ +  + F G GL+ MY KC  + +AR V  
Sbjct: 212 MFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFK 271

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE-- 247
            MP +D++ WN++++G++QN   +EA  +   M +  I  +  T++++L S+        
Sbjct: 272 LMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYM 331

Query: 248 ----NVLSVKEMFLKLDNK----------------------------NLVSWNVMIAVYA 275
               + LS+K  F + DN                             +LV +  ++  YA
Sbjct: 332 CRQIHALSLKSGF-EFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYA 390

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            +    EA+ LYL+M+  GI+P++   +S+L AC  LSA   G+++H ++ +     ++ 
Sbjct: 391 QDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIF 450

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
             N+LV+MYAKCGS+ +A   F ++  + +VSW++MI      G G +A+ LF +ML  G
Sbjct: 451 AGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVG 510

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + P+ I  VSVL AC+HAGL+ E ++YF  M   + + P  EH+AC++DLLGRAGK+E A
Sbjct: 511 VPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAA 570

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
            +L+ +MP + N  +WG+L+ A  ++ N+D+G  AA+ +  L P +SG +VLL+NIYA  
Sbjct: 571 MELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASV 630

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           G W  V RVR+ M    +KK PG S +E+ D+V    +  RS
Sbjct: 631 GMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRS 672



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 232/455 (50%), Gaps = 35/455 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   K++H  +++     S+  +   L+  Y  CG   D R +FD I +++VV +N L 
Sbjct: 25  DLVLGKQVHGIVVVTG-FDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALF 83

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             YV++ ++ +A+ ++ +M + G  P+ ++   ++  C+G    + G +IH  ++K+G D
Sbjct: 84  SCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYD 143

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            + F+ N LV MY K G L++A  V +++   D+V+WN+++AG   +     AL++ REM
Sbjct: 144 SDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREM 203

Query: 223 ESLRIKPDADTMASLLPSVT------------------NTSPENVLSV------------ 252
               + P+  T++S L +                    +   ++ L V            
Sbjct: 204 NKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSM 263

Query: 253 ---KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
              + +F  +  +++++WN +I+ ++ N    EA  L+  M   GI  N  ++++VL + 
Sbjct: 264 DDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSI 323

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L A  + R+IH    +   + +  + N+L+D Y KCG + +A  VF++    D+V +T
Sbjct: 324 AALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFT 383

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           S+++AY   GQG +A+ L+ +M   G+ PDS    S+L+AC+     E+G+    +   +
Sbjct: 384 SLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGK-QVHVHILK 442

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM 464
           +  +  I     LV++  + G +E+A     ++P+
Sbjct: 443 FGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPV 477



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 162/359 (45%), Gaps = 74/359 (20%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M + G   + + +P VLKAC+ +  L++G Q+H  VV  G D + F              
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEF-------------- 46

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
                              NS+V  YA+ G F +A                         
Sbjct: 47  -----------------VANSLVILYAKCGGFGDA------------------------- 64

Query: 241 VTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                       + +F  + ++++VSWN + + Y ++ M  EAV L+  M + GI PN  
Sbjct: 65  ------------RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEF 112

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           S++S++  C  L   + GRKIH Y+ +     +    NALVDMYAK G L +A +VFD++
Sbjct: 113 SLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEI 172

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
              D+VSW ++I+   +    + A+ L  +M  SG+CP+     S L AC+   L E GR
Sbjct: 173 AKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGR 232

Query: 421 YYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
              ++ +   K+    + F    L+D+  +   +++A  + K MP E +   W ++++ 
Sbjct: 233 ---QLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMP-ERDMIAWNAVISG 287



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 172/364 (47%), Gaps = 40/364 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LH+ +I    + S+  +G+ L+  Y  C  M D R VF  +  ++++ +N +I  +  
Sbjct: 232 RQLHSSLI-KMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQ 290

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    +A  ++  M   G   +  T   VLK+ +   +  +  QIH   +K G +++ + 
Sbjct: 291 NEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYV 350

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+  YGKCG +++A RV  + P  D+V + S+V  YAQ+G+ +EAL +  EM+   I
Sbjct: 351 VNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGI 410

Query: 228 KPDADTMASLLPSVTNTSPE--------NVLSVKEM------------------------ 255
           KPD+   +SLL +  + S          ++L    M                        
Sbjct: 411 KPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASC 470

Query: 256 -FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
            F ++  + +VSW+ MI   A +    EA+ L+ QM   G+ PN I++ SVL AC    A
Sbjct: 471 AFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACN--HA 528

Query: 315 LLLGRKIHRYVERKKL---QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTS 370
            L+    H +   K L   +P       ++D+  + G L  A  + ++M  Q + + W +
Sbjct: 529 GLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGA 588

Query: 371 MISA 374
           ++ A
Sbjct: 589 LLGA 592



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 106/194 (54%), Gaps = 6/194 (3%)

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M + GI+ N  +  SVL AC     L+LG+++H  V       +  + N+LV +YAKCG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
             +AR++FD +  + VVSW ++ S Y  S    +AV+LF  M++SG+ P+  +  S+++ 
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA--CLVDLLGRAGKVEEAYDLIKQMPMEPN 467
           C+      +GR   KI     KL    + F+   LVD+  + G +E+A  +  ++  +P+
Sbjct: 121 CTGLEDSVQGR---KIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIA-KPD 176

Query: 468 ERIWGSLVAACCLY 481
              W +++A C L+
Sbjct: 177 IVSWNAIIAGCVLH 190


>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
 gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
          Length = 598

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 178/490 (36%), Positives = 276/490 (56%), Gaps = 43/490 (8%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVH-----GFDPDCYTYPCVLKACSG-SNSLLVGLQ 151
           FN LI S  +      A   +  + V      G  PD YT P  LKAC+     L  G Q
Sbjct: 80  FNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGLREGCQ 139

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
            H    K G    +   N LV  YG CG   +AR+V ++M  +DVV+W ++++ + + G 
Sbjct: 140 AHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTRGGM 199

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSP------------------------- 246
           F EAL V  EM+   + P+  T+AS+L +  N                            
Sbjct: 200 FMEALGVLAEMD---VTPNEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNA 256

Query: 247 --------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                   E +   + +F  L  +++VSW VMI+       P+EA++++  M++ G++P+
Sbjct: 257 LLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPD 316

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
            + +++VL AC  L AL  GR +H Y+ERK ++ ++ +  ++VDMY KCG L  A ++F 
Sbjct: 317 KVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQ 376

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
           +M  ++V SW ++I+ + + G+G +A+  F +M+ SGL P+ + F++VL AC H+GL++E
Sbjct: 377 EMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQE 436

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           GR  F++MT+ YKL P  +H+ C+VDLLGRAG ++EAYD+IK MPM P    W +L++AC
Sbjct: 437 GRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSAC 496

Query: 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
             +  MD       HI  L  + +G YVLLSN+YA + RW DV + R FMN KG++K PG
Sbjct: 497 QAHGRMDFSQQILMHIHELESSGNGIYVLLSNMYAVSDRWADVGKARGFMNEKGMQKEPG 556

Query: 539 ASV-EMNDQV 547
           +SV E+N + 
Sbjct: 557 SSVIEVNGKT 566



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 163/346 (47%), Gaps = 38/346 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  YGACGQ  D R VFDE+  ++VV +  L+ ++    ++ +AL V   M V    P+
Sbjct: 159 LVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEMDV---TPN 215

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   VL AC    +   G  +H    +   + NL  GN L+ MY KC  L  ARRV +
Sbjct: 216 EVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFD 275

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            + ++D+V+W  M++G  Q  R  EAL+V   M+   +KPD   ++++L +  +      
Sbjct: 276 MLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALES 335

Query: 250 --------------------LSVKEMFLK---LDN----------KNLVSWNVMIAVYAN 276
                                SV +M++K   LD           KN+ SWN +I  +A 
Sbjct: 336 GRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFAL 395

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLR 335
           +    EA+D + +M   G+ PN ++  +VL AC     +  GR++   + +  KL P   
Sbjct: 396 HGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWED 455

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQ 380
               +VD+  + G + EA  V   M  +  V +W +++SA    G+
Sbjct: 456 HYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSACQAHGR 501



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 123/252 (48%), Gaps = 10/252 (3%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           N  +G  L+  Y  C ++   R VFD +  +++V + V+I   V      +AL V+  M 
Sbjct: 250 NLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQ 309

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
           + G  PD      VL AC+   +L  G  +H  + + G+++++  G  +V MY KCGCL 
Sbjct: 310 ISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLD 369

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
            A  +  +MP K+V +WN+++ G+A +GR  EALD    M +  + P+  T  ++L +  
Sbjct: 370 TAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACC 429

Query: 243 NTSPENVLSVKEMF-LKLDNKNLVSW----NVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297
           ++    V   +++F L   +  L  W      M+ +     +  EA D+   M    + P
Sbjct: 430 HSGL--VQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMP---MRP 484

Query: 298 NAISVASVLPAC 309
              +  ++L AC
Sbjct: 485 GVFTWVTLLSAC 496


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 181/546 (33%), Positives = 300/546 (54%), Gaps = 49/546 (8%)

Query: 48  KKLHAQII---INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           K+LHA +I     Q L    S+  +++  Y  C +  D + +F+E+  +NVV +N++IR+
Sbjct: 80  KQLHAHLIKFGFCQVL----SLQNQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRA 135

Query: 105 YVNNYLYYDA------LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
            V      ++         ++ M +    PD  T+  ++  C+  N + +G+Q+HC  VK
Sbjct: 136 SVGRNDENESSGMRLCFSYFRRMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVK 195

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
           VG D + F G  LV +Y KCG ++ ARRV  D+  +D+V WN MV+ Y  N   +EA  V
Sbjct: 196 VGFDLDCFVGCALVGLYAKCGFVENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRV 255

Query: 219 CREMESLRIKPDADTMASLLPSVTNTS--------------------------------- 245
              M    +  D  T +SLL  +++ +                                 
Sbjct: 256 FNSMRLDVVNGDEFTFSSLLSVISDDALEYYDFGKQVHSLVLRQSFDSDVLVASALINMY 315

Query: 246 --PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
              EN++  + +F ++  +N+V+WN MI  + N+    E + L  +M   G  P+ ++++
Sbjct: 316 AKSENIIDARRVFDEMSIRNVVAWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELTIS 375

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           S++ +CG  SA+    ++H +  +   Q  L + N+L+  Y+KCGS+T A   F+     
Sbjct: 376 SIISSCGYASAITETLQVHAFAVKLSCQDFLSVANSLISAYSKCGSITSAFKCFELTSQP 435

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           D+V+WTS+I AY   G    +  +F KML  G+ PD IAF+ VLSAC+H GL+ +G +YF
Sbjct: 436 DLVTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSACAHCGLVTKGLHYF 495

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
           K+MT  Y++VP  EH+ CLVDLLGR G + EA+++++ MP+E +    G+ + +C L+SN
Sbjct: 496 KLMTNAYQIVPDSEHYTCLVDLLGRYGLINEAFEILRSMPIEVDSDTLGAFIGSCKLHSN 555

Query: 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VE 542
           M++  LAA+ +F + P +S  Y ++SNI+A    W DV+R+RK M  K   K+PG S +E
Sbjct: 556 MELAKLAAEKLFLIEPEKSVNYAVMSNIFASQKHWYDVERIRKTMEDKRDAKVPGCSWIE 615

Query: 543 MNDQVQ 548
           + +Q+ 
Sbjct: 616 IGNQIH 621



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 184/404 (45%), Gaps = 57/404 (14%)

Query: 123 VHGFDPDCYTYPC--VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
            H  DP+     C   LK  +    L  G Q+H  ++K G    L   N ++++Y KC  
Sbjct: 51  THFNDPNTVHLFCSNALKISAKKGYLPEGKQLHAHLIKFGFCQVLSLQNQILSVYLKCQE 110

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE----ALDVC----REMESLRIKPDAD 232
            ++A+++  ++P ++VV+WN M+   A  GR DE     + +C    R M    + PD  
Sbjct: 111 AEDAKKLFEELPVRNVVSWNIMIR--ASVGRNDENESSGMRLCFSYFRRMLLEMMVPDHI 168

Query: 233 TMASLLPSVTNTSPEN---------------------------------VLSVKEMFLKL 259
           T   L+   T  +                                    V + + +F  +
Sbjct: 169 TFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCGFVENARRVFCDV 228

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD--LSALLL 317
             ++LV WNVM++ Y  NS+P EA  ++  M +  +  +  + +S+L    D  L     
Sbjct: 229 SCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLLSVISDDALEYYDF 288

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           G+++H  V R+    ++ + +AL++MYAK  ++ +AR VFD+M  ++VV+W +MI  +G 
Sbjct: 289 GKQVHSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMSIRNVVAWNTMIVGFGN 348

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG----RYYFKIMTEQYKLV 433
            G G + + L  +ML  G  PD +   S++S+C +A  + E      +  K+  + +  V
Sbjct: 349 HGDGNEVMKLVKEMLREGFLPDELTISSIISSCGYASAITETLQVHAFAVKLSCQDFLSV 408

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
                   L+    + G +  A+    ++  +P+   W SL+ A
Sbjct: 409 AN-----SLISAYSKCGSITSAFKCF-ELTSQPDLVTWTSLIYA 446



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 8/137 (5%)

Query: 291 EVHGIEPNAISV--ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           + H  +PN + +  ++ L        L  G+++H ++ +      L L+N ++ +Y KC 
Sbjct: 50  QTHFNDPNTVHLFCSNALKISAKKGYLPEGKQLHAHLIKFGFCQVLSLQNQILSVYLKCQ 109

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISA-YGMSGQGYDA-----VALFSKMLMSGLCPDSIA 402
              +A+ +F+++  ++VVSW  MI A  G + +   +      + F +ML+  + PD I 
Sbjct: 110 EAEDAKKLFEELPVRNVVSWNIMIRASVGRNDENESSGMRLCFSYFRRMLLEMMVPDHIT 169

Query: 403 FVSVLSACSHAGLLEEG 419
           F  ++  C+    +E G
Sbjct: 170 FNGLICLCTQFNDIEMG 186



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 110/271 (40%), Gaps = 47/271 (17%)

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
           S+   L+  Y  CG +      F+  +  ++V +  LI +Y  + L   +  +++ M  +
Sbjct: 407 SVANSLISAYSKCGSITSAFKCFELTSQPDLVTWTSLIYAYAFHGLAEKSTEMFEKMLSY 466

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G  PD   +  VL AC+           HC +V  GL Y                  K  
Sbjct: 467 GIKPDRIAFLGVLSACA-----------HCGLVTKGLHY-----------------FKLM 498

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
                 +P  D   +  +V    + G  +EA ++ R M    I+ D+DT+ + + S    
Sbjct: 499 TNAYQIVP--DSEHYTCLVDLLGRYGLINEAFEILRSMP---IEVDSDTLGAFIGSCKLH 553

Query: 245 SPENV--LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
           S   +  L+ +++FL ++ +  V++ VM  ++A+     +   +   ME           
Sbjct: 554 SNMELAKLAAEKLFL-IEPEKSVNYAVMSNIFASQKHWYDVERIRKTMEDKR-------- 604

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
            + +P C   S + +G +IH +V   K  PN
Sbjct: 605 DAKVPGC---SWIEIGNQIHSFVSNDKSHPN 632


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 188/542 (34%), Positives = 310/542 (57%), Gaps = 35/542 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+ +  +LH+ + +   L    ++   L+  Y  C  + D   +F+ +   ++V +N +I
Sbjct: 257 DLLSGAQLHS-LAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMI 315

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
              V N L+ +A  ++ +M   G  PD  T   +L A +  N L  G ++H  +V+  ++
Sbjct: 316 SGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVN 375

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++F  + LV +Y KC  ++ A+ + +   + DVV  ++M++GY  NG  +EAL + R +
Sbjct: 376 MDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYL 435

Query: 223 ESLRIKPDADTMASLLPS----------------VTNTSPENVLSVKE------------ 254
               IKP+A T+AS+LP                 V   + E    V+             
Sbjct: 436 LEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRL 495

Query: 255 -----MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                +FLK+  K+ V+WN MI+ ++ N  P EA+DL+ QM + GI+ N I++++ L AC
Sbjct: 496 DLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSAC 555

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L A+  G++IH    +  ++ ++  E+AL+DMYAKCG+L  A  VF+ M  ++ VSW 
Sbjct: 556 ASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWN 615

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           S+ISAYG  G   ++V+L   M   G  PD + F++++SAC+HAGL+EEG   F+ MT++
Sbjct: 616 SIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKK 675

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y + PR+EHFAC+VDL  R+GK+++A   I  MP +P+  IWG+L+ AC ++ N+++  +
Sbjct: 676 YLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADI 735

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           A+  +F L P  SGYYVL+SNI A AGRW  V +VR+ M    I K+PG S V++N+   
Sbjct: 736 ASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSSH 795

Query: 549 II 550
           + 
Sbjct: 796 LF 797



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 237/478 (49%), Gaps = 46/478 (9%)

Query: 42  PDIKTLKKLHAQIIINQHL--HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK---NVV 96
           P +    ++HA+ +++  L  H++ ++  +L+  Y    +  D   VF  +      + +
Sbjct: 46  PHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAASSL 105

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVH--GFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
            +N LIR +     ++ A+  Y  M  H     PD +T P V+K+C+   ++ +G  +H 
Sbjct: 106 PWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHR 165

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
           +   +GL  +++ G+ LV MY   G L  AR   + +P +D V WN M+ G  + G  D 
Sbjct: 166 TARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDG 225

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPE-------NVLSVK-------------- 253
           A+ + R M +   +P+  T+A  L SV  T  +       + L+VK              
Sbjct: 226 AVRLFRNMRASGCEPNFATLACFL-SVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLL 284

Query: 254 -------------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                         +F  +   +LV+WN MI+    N +  EA  L+  M+  G  P++I
Sbjct: 285 AMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSI 344

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           ++ S+LPA  DL+ L  G+++H Y+ R  +  ++ L +ALVD+Y KC  +  A+ ++D  
Sbjct: 345 TLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAA 404

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG- 419
           R  DVV  ++MIS Y ++G   +A+ +F  +L   + P+++   SVL  C+    L  G 
Sbjct: 405 RAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQ 464

Query: 420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           + +  ++   Y+    +E  + L+D+  + G+++ ++ +  +M  + +E  W S++++
Sbjct: 465 QIHGYVLRNAYERKCYVE--SALMDMYAKCGRLDLSHYIFLKMS-QKDEVTWNSMISS 519


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 205/613 (33%), Positives = 323/613 (52%), Gaps = 86/613 (14%)

Query: 1   MKAVVLLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHL 60
            K V L+  H S+    Q L++    +LLS  +C D+      +   ++LH  II +   
Sbjct: 155 FKTVSLIRLHASSAS--QDLIVHPISSLLS--SCTDV----KSLAEGRQLHGHII-SLGF 205

Query: 61  HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF---FNVLIRSYVNNYLYYDALHV 117
             +P +  KL+  Y A   +VD  HV  E  N N++    +N+LI SYV N     AL  
Sbjct: 206 EQHPILVPKLVTFYSAFNLLVDA-HVITE--NSNILHPFPWNLLISSYVRNGFCQKALSA 262

Query: 118 YKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK 177
           YK M   G  PD +TYP VLKAC     L  G ++H S+    + ++L   N L++MYGK
Sbjct: 263 YKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGK 322

Query: 178 CGCLKEARRVLNDMPSKDVVTWNSMVA--------------------------------- 204
           CG +  AR + + +P +D V+WNSM++                                 
Sbjct: 323 CGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTI 382

Query: 205 --GYAQNGRFDEALDVC-------------------------------REMESLRIKP-- 229
             GY + G +  AL++                                +E+ S  I+   
Sbjct: 383 AGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCF 442

Query: 230 -DADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
            + DT+ + L ++ +   +++     +F  ++ K+L+SWN +I+   +     EA  L  
Sbjct: 443 GEVDTVKNSLITMYSRC-KDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLR 501

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK-LQPNLRLENALVDMYAKC 347
           +M + GIEPN +++ASVLP C  ++ L  G++ H Y+ R++  + +L L NALVDMYA+ 
Sbjct: 502 EMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARS 561

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           G + EAR VFD +  +D +++TSMI+ YGM G+G  A+ LF +M    + PD I  ++VL
Sbjct: 562 GKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVL 621

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
           SACSH+GL+ +G+  F+ M   Y L P +EHFAC+ DL GRAG + +A ++I+ MP +P 
Sbjct: 622 SACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPT 681

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527
             +W +L+ AC ++ N +IG  AA+ +  + P   GYYVL++N+YA AG W  + +VR F
Sbjct: 682 PAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRXF 741

Query: 528 MNSKGIKKMPGAS 540
           M   G++K PG +
Sbjct: 742 MRDLGVRKAPGCA 754



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 121/522 (23%), Positives = 209/522 (40%), Gaps = 92/522 (17%)

Query: 58  QHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHV 117
           QH+H + S           C  +   +  F  +    +      ++ + +     DA   
Sbjct: 109 QHVHPSAS-----------CNALESAQETFTSVDASMIDSLLTSLKEFTSRGNLLDAFKT 157

Query: 118 YKNMSVHGFDP--DCYTYP--CVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
              + +H      D   +P   +L +C+   SL  G Q+H  ++ +G + +      LV 
Sbjct: 158 VSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVT 217

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
            Y     L +A  +  +        WN +++ Y +NG   +AL   ++M    I+PD  T
Sbjct: 218 FYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFT 277

Query: 234 MASLL----------------PSVTNTSPENVLSV-----------------KEMFLKLD 260
             S+L                 S+  +  +  L V                 +++F K+ 
Sbjct: 278 YPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIP 337

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI-------------------- 300
            ++ VSWN MI+VYA+  M  EA +L+  M    IE N I                    
Sbjct: 338 ERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALE 397

Query: 301 -------------SVASV--LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
                        SVA +  L AC  +    LG++IH +  R        ++N+L+ MY+
Sbjct: 398 LLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNSLITMYS 457

Query: 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
           +C  L  A  +F  M  + ++SW S+IS      +  +A  L  +ML+SG+ P+ +   S
Sbjct: 458 RCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIAS 517

Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA---YDLIKQ- 461
           VL  C+    L+ G+ +   MT +      +  +  LVD+  R+GKV EA   +D++ + 
Sbjct: 518 VLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGER 577

Query: 462 -----MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
                  M     + G   AA  L+  M+   +  DHI  +A
Sbjct: 578 DKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIA 619


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 186/546 (34%), Positives = 297/546 (54%), Gaps = 39/546 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++   + H+ III + L  N  +G  L+  Y  CG + D R +F+ + +++ V +N +I
Sbjct: 443 DLEMGSQFHS-IIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTII 501

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             YV +    +A  ++  M+  G   D       LKAC+  + L  G Q+HC  VK GLD
Sbjct: 502 GGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLD 561

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
             L  G+ L+ MY KCG +++AR+V + MP   VV+ N+++AGY+QN   +EA+ + +EM
Sbjct: 562 RVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQN-NLEEAVVLFQEM 620

Query: 223 ESLRIKPDADTMASLLPSVTN-------------------TSPENVLSVKEMFLKLDN-- 261
            +  + P   T A+++ +                      +S    L +  + L +++  
Sbjct: 621 LTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRR 680

Query: 262 --------------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                         K++V W  M++ ++ N    EA+  Y +M   G  P+  +  +VL 
Sbjct: 681 MAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLR 740

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVV 366
            C  LS+L  GR IH  +       +    N L+DMYAKCG +  +  VFD+MR + +VV
Sbjct: 741 VCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVV 800

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           SW S+I+ Y  +G   DA+ +F  M  S + PD I F+ VL+ACSHAG + +GR  F++M
Sbjct: 801 SWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMM 860

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
             QY +  R++H AC+VDLLGR G ++EA D I+   ++P+ R+W SL+ AC ++ +   
Sbjct: 861 IGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDMR 920

Query: 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMND 545
           G +AA+ +  L P  S  YVLLSNIYA  GRW +   +RK M  +G+KK+PG S +++  
Sbjct: 921 GEIAAERLIELEPQNSSAYVLLSNIYASQGRWEEANALRKAMRDRGVKKVPGYSWIDVGQ 980

Query: 546 QVQIIA 551
           +  I A
Sbjct: 981 RRHIFA 986



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 140/518 (27%), Positives = 247/518 (47%), Gaps = 45/518 (8%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           +HA+ I    L SN  +G  L+  Y  C +M     VF+ +  +N V +N +IR Y +N 
Sbjct: 349 VHAEAI-KLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNG 407

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
             +  + ++ +M   G++ D +T+  +L  C+ S+ L +G Q H  ++K  L  NLF GN
Sbjct: 408 ESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGN 467

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            LV MY KCG L++AR++   M  +D V+WN+++ GY Q+    EA D+   M S  I  
Sbjct: 468 ALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVS 527

Query: 230 DADTMASLLPSVTNT------SPENVLSVK---------------------------EMF 256
           D   +AS L + TN          + LSVK                           ++F
Sbjct: 528 DGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVF 587

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
             +   ++VS N +IA Y+ N++  EAV L+ +M   G+ P+ I+ A+++ AC    +L 
Sbjct: 588 SSMPEWSVVSMNALIAGYSQNNLE-EAVVLFQEMLTKGVNPSEITFATIVEACHKPESLT 646

Query: 317 LGRKIHRYVERKKLQPNLR-LENALVDMYAKCGSLTEARTVFDQMRC-QDVVSWTSMISA 374
           LG + H  + +         L  +L+ +Y     + EA  +F ++   + +V WT M+S 
Sbjct: 647 LGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSG 706

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
           +  +G   +A+  + +M   G  PD   FV+VL  CS    L EGR    ++   + L  
Sbjct: 707 HSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLI---FHLAH 763

Query: 435 RIEHFA--CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL--YSNMDIGILA 490
            ++      L+D+  + G ++ +  +  +M    N   W SL+       Y+   + I  
Sbjct: 764 DLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFD 823

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
           +    H+ P++  +  +L+   + AG+  D +++ + M
Sbjct: 824 SMRQSHIMPDEITFLGVLTAC-SHAGKVSDGRKIFEMM 860



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 116/446 (26%), Positives = 219/446 (49%), Gaps = 11/446 (2%)

Query: 37  ILDKYPD-----IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
           + D+ P      ++  K +H++ +I   + S   +G  ++  Y  C Q+      F+ + 
Sbjct: 64  VFDEMPHRLALALRIGKAVHSKSLI-LGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSL- 121

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
            K+V  +N ++  Y +       L  + ++  +   P+ +T+  VL   +   ++  G Q
Sbjct: 122 EKDVTAWNSMLSMYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQ 181

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           IHCS++K+GL+ N + G  LV MY KC  L +A+RV + +   + V W  + +GY + G 
Sbjct: 182 IHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGL 241

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
            +EA+ V   M     +PD     +++   T  S   +   + +F ++ + ++V+WNVMI
Sbjct: 242 PEEAVIVFERMRGEGHRPDHLAFVTVIN--TYISLGKLKDARLLFGEMPSPDVVAWNVMI 299

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           + +        A++ +L M    ++    ++ SVL A G ++ L LG  +H    +  L 
Sbjct: 300 SGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLA 359

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            N+ + ++LV MY+KC  +  A  VF+ +  ++ V W +MI  Y  +G+ +  + LF  M
Sbjct: 360 SNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDM 419

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
             SG   D   F S+LS C+ +  LE G  +  I+ ++ KL   +     LVD+  + G 
Sbjct: 420 KSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKK-KLTKNLFVGNALVDMYAKCGA 478

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAA 477
           +E+A  + + M    N   W +++  
Sbjct: 479 LEDARQIFEHMCDRDNVS-WNTIIGG 503


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 177/543 (32%), Positives = 291/543 (53%), Gaps = 40/543 (7%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC ++     D+   KK+H QI+      +    GL  +  Y  CG++  +  VF++IT 
Sbjct: 163 ACTEV----QDLDNGKKIHCQIVKVPSFDNVVLTGL--LDMYAKCGEIKSSYKVFEDITL 216

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           +NVV +  +I  YV N LY + L ++  M  +    + YTY  ++ AC+   +L  G   
Sbjct: 217 RNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWF 276

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  ++K G++ +      L+ MY KCG +  ARRV N+    D+V W +M+ GY  NG  
Sbjct: 277 HGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSV 336

Query: 213 DEALDVCREMESLRIKPDADTMASLLPS---------------------VTNTSPENVL- 250
           +EAL + ++M  + IKP+  T+AS+L                       + +T+  N L 
Sbjct: 337 NEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGIWDTNVANALV 396

Query: 251 ----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                       K +F     K++V+WN +I+ ++ N    EA+ L+ +M    + PN +
Sbjct: 397 HMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGV 456

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKL--QPNLRLENALVDMYAKCGSLTEARTVFD 358
           +VAS+  AC  L +L +G  +H Y  +       ++ +  AL+D YAKCG    AR +FD
Sbjct: 457 TVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFD 516

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
            +  ++ ++W++MI  YG  G    ++ LF +ML     P+   F SVLSACSH G++ E
Sbjct: 517 TIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACSHTGMVNE 576

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           G+ YF  M + Y   P  +H+ C+VD+L RAG++E+A D+I++MP++P+ R +G+ +  C
Sbjct: 577 GKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGC 636

Query: 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
            ++S  D+G +    +  L P+ + YYVL+SN+YA  GRW   K VR  M  +G+ K+ G
Sbjct: 637 GMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWSQAKEVRNLMKQRGLSKIAG 696

Query: 539 ASV 541
            S+
Sbjct: 697 HSI 699



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 141/478 (29%), Positives = 226/478 (47%), Gaps = 38/478 (7%)

Query: 34  CNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
           C  +L K  +I +L++ H  ++    L  + SI  KL+  YG+ G   D R VFD+I   
Sbjct: 59  CFLLLSKCTNIDSLRQAHG-VLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEP 117

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           +   + V++R Y  N   ++ +  Y  +  HGF  D   +   LKAC+    L  G +IH
Sbjct: 118 DFYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIH 177

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
           C +VKV    N+    GL+ MY KCG +K + +V  D+  ++VV W SM+AGY +N  ++
Sbjct: 178 CQIVKVPSFDNVVL-TGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYE 236

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPEN--------------------VLSVK 253
           E L +   M    +  +  T  +L+ + T     +                    V S+ 
Sbjct: 237 EGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLL 296

Query: 254 EMFLKLDN-------------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
           +M++K  +              +LV W  MI  Y +N    EA+ L+ +M   GI+PN +
Sbjct: 297 DMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCV 356

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           ++ASVL  CG +  L LGR IH    +  +  +  + NALV MYAKC    +A+ VF+  
Sbjct: 357 TIASVLSGCGLVGNLELGRSIHGLSIKVGIW-DTNVANALVHMYAKCYQNRDAKYVFEME 415

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             +D+V+W S+IS +  +G  ++A+ LF +M    + P+ +   S+ SAC+  G L  G 
Sbjct: 416 SEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGS 475

Query: 421 YYFKIMTEQYKLVPRIEHFA-CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
                  +   L     H    L+D   + G  E A  LI     E N   W +++  
Sbjct: 476 SLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESA-RLIFDTIEEKNTITWSAMIGG 532


>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
 gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 677

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 181/509 (35%), Positives = 283/509 (55%), Gaps = 37/509 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G++   R VFD + N++V+ +N +I  Y  N    DAL ++  M     D D
Sbjct: 158 LLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLD 217

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   +L  C     L +G  +H  V +  L   +   N LV MY KCG + EAR V +
Sbjct: 218 HATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFD 277

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP---------- 239
            M  +DV+TW  M+ GY ++G  + AL++CR M+   ++P+A T+ASL+           
Sbjct: 278 RMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVND 337

Query: 240 -------SVTNTSPENVL---SVKEMFLKLDNKNLV-------------SWNVMIAVYAN 276
                  +V      +++   S+  M+ K    +L               W+ +IA    
Sbjct: 338 GKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQ 397

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N + ++A+ L+ +M    +EPN  ++ S+LPA   L+ L     IH Y+ +     +L  
Sbjct: 398 NELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDA 457

Query: 337 ENALVDMYAKCGSLTEARTVF----DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
              LV +Y+KCG+L  A  +F    ++ + +DVV W ++IS YGM G G++A+ +F +M+
Sbjct: 458 ATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMV 517

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
            SG+ P+ I F S L+ACSH+GL+EEG   F+ M E YK + R  H+ C+VDLLGRAG++
Sbjct: 518 RSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRL 577

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
           +EAY+LI  +P EP   +WG+L+AAC  + N+ +G +AA+ +F L P  +G YVLL+NIY
Sbjct: 578 DEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIY 637

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           A  GRW D+++VR  M + G++K PG S 
Sbjct: 638 AALGRWKDMEKVRSMMENVGLRKKPGHST 666



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 124/482 (25%), Positives = 233/482 (48%), Gaps = 49/482 (10%)

Query: 44  IKTLKKLHAQII----INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           I   K LH  +I    ++ H+ S  S+      TY  CG +   R +F+E+   +++ +N
Sbjct: 31  ISKTKALHCHVITGGRVSGHILSTLSV------TYALCGHITYARKLFEEMPQSSLLSYN 84

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFD--PDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           ++IR YV   LY+DA+ V+  M   G    PD YTYP V KA     S+ +GL +H  ++
Sbjct: 85  IVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRIL 144

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           +     + +  N L+AMY   G ++ AR V + M ++DV++WN+M++GY +NG  ++AL 
Sbjct: 145 RSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALM 204

Query: 218 VCREMESLRIKPDADTMASLLP------------SVTNTSPENVLSVK--------EMFL 257
           +   M +  +  D  T+ S+LP            +V     E  L  K         M+L
Sbjct: 205 MFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYL 264

Query: 258 K-------------LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
           K             ++ +++++W  MI  Y  +     A++L   M+  G+ PNA+++AS
Sbjct: 265 KCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIAS 324

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           ++  CGD   +  G+ +H +  R+++  ++ +E +L+ MYAKC  +     VF       
Sbjct: 325 LVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYH 384

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
              W+++I+    +    DA+ LF +M    + P+     S+L A +    L +      
Sbjct: 385 TGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHC 444

Query: 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL---IKQMPMEPNERIWGSLVAACCLY 481
            +T+    +  ++    LV +  + G +E A+ +   I++     +  +WG+L++   ++
Sbjct: 445 YLTKT-GFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMH 503

Query: 482 SN 483
            +
Sbjct: 504 GD 505



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 111/244 (45%), Gaps = 17/244 (6%)

Query: 7   LCR--HFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNP 64
           LCR   F   +P    + S    L+S   C D L     +   K LH   +  Q ++S+ 
Sbjct: 306 LCRLMQFEGVRPNAVTIAS----LVS--VCGDALK----VNDGKCLHGWAV-RQQVYSDI 354

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
            I   L+  Y  C ++     VF   +  +   ++ +I   V N L  DAL ++K M   
Sbjct: 355 IIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRRE 414

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
             +P+  T   +L A +    L   + IHC + K G   +L    GLV +Y KCG L+ A
Sbjct: 415 DVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESA 474

Query: 185 RRVLNDM----PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
            ++ N +     SKDVV W ++++GY  +G    AL V  EM    + P+  T  S L +
Sbjct: 475 HKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNA 534

Query: 241 VTNT 244
            +++
Sbjct: 535 CSHS 538


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 175/525 (33%), Positives = 281/525 (53%), Gaps = 51/525 (9%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSI----GLKLMRTYGACGQMVDTRHVFD 88
           AC  I D    ++    LHA+I+        P +    G  L+  Y  CG++   R VFD
Sbjct: 255 ACTSIYD----LEWGAHLHARIV-----RMEPCLDVYAGCGLIDMYAKCGRLESARQVFD 305

Query: 89  EITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLV 148
            +T  N V +  LI          +AL ++  M       D +T   VL  C     + +
Sbjct: 306 GLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISI 365

Query: 149 GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
           G Q+H   +  GLD ++   N LV MY KCG + +A      MP +D+++W +M+  ++Q
Sbjct: 366 GEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQ 425

Query: 209 NGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWN 268
            G  ++A                                     +E F K+  +N++SWN
Sbjct: 426 AGDVEKA-------------------------------------REYFDKMPERNVISWN 448

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
            M+A Y       E + +Y+QM   G++ + I+ ++ + AC DL+ L+LG +I    E+ 
Sbjct: 449 SMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKL 508

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
               N+ + N++V MY++CG + EA+ +F  +  +++VSW +M++ Y  +GQG   + +F
Sbjct: 509 GFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIF 568

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
            KML  G  PD I++VSVLS CSH+G + EG+YYF  MT+ + + P  EHF C+VDLLGR
Sbjct: 569 EKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGR 628

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508
           AG++E+A +LI QMP +PN  IWG+L+AAC ++ N  +  LA  ++  L     G Y LL
Sbjct: 629 AGQLEQAKNLINQMPFKPNAAIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLL 688

Query: 509 SNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
           +NIY+++G+   V  VRK M  KG++K PG S +E++++V +  +
Sbjct: 689 ANIYSESGKIQGVTNVRKLMRDKGVRKNPGCSWIEVDNRVHVFTV 733



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 123/476 (25%), Positives = 201/476 (42%), Gaps = 86/476 (18%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           I   +KLHAQ+I    L S+  +   L+  Y  CG + D   VF  I   NV  +N +I 
Sbjct: 20  IPIARKLHAQLIF-MGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMIS 78

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTY-------------PCVLKACSGSNSLLVGL 150
            + ++    +A  +++ M     + D  ++                +KA      L + L
Sbjct: 79  GFADSGQMREAEKLFEKMP----ERDSVSWNSMMSGYFHNGELEATIKASGSLGYLKLAL 134

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
           Q+H    K     +      ++ MY KCG +  A++V    P+  +  WNSM+ GY++ G
Sbjct: 135 QLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYG 194

Query: 211 RFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVM 270
              +AL                                     E+F K+  ++ VSWN M
Sbjct: 195 SVKKAL-------------------------------------ELFAKMPERDTVSWNTM 217

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
           I++ + +   AE ++ +L+M   G  PN+++ ASVL AC  +  L  G  +H  + R + 
Sbjct: 218 ISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEP 277

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
             ++     L+DMYAKCG L  AR VFD +   + VSWTS+I     +G   +A+ LF++
Sbjct: 278 CLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQ 337

Query: 391 MLMSGLCPDSIAFVSVLSAC-----------SHAGLLEEG------------RYYFKI-- 425
           M    +  D     +VL  C            HA  +  G              Y K   
Sbjct: 338 MREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGD 397

Query: 426 ---MTEQYKLVP--RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
                  ++L+P   I  +  ++    +AG VE+A +   +MP E N   W S++A
Sbjct: 398 VWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMP-ERNVISWNSMLA 452



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 4/112 (3%)

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           +  C  L ++ + RK+H  +    L+ ++ L+N L++MY+ CG +++A  VF  +   +V
Sbjct: 11  MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 70

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
            SW +MIS +  SGQ  +A  LF KM       DS+++ S++S   H G LE
Sbjct: 71  YSWNTMISGFADSGQMREAEKLFEKMPER----DSVSWNSMMSGYFHNGELE 118


>gi|255559020|ref|XP_002520533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540375|gb|EEF41946.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 547

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 179/493 (36%), Positives = 285/493 (57%), Gaps = 16/493 (3%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K LHA++I++  L S+ +   KL+  Y    Q+   R +FD I   N     VLI +Y  
Sbjct: 49  KHLHARLIVSG-LASSNNFASKLISFYTETRQLSIVRKLFDRIPKPNFYQRTVLIGAYSR 107

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +  Y D L V+  M      P+ +  P VL+AC     L  G  +H  +++   + ++  
Sbjct: 108 HGFYQDVLDVFSEMQNERLRPNKFVIPSVLRACGHVFDLQTGKILHSVILRHLFESDVVV 167

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L+ MY +C  +++AR+V + M  KD+V  N+MV GYAQNG   E   +  +M+ L I
Sbjct: 168 NTALIDMYSRCRHVEKARKVFDGMQEKDLVALNAMVLGYAQNGFAKEGFLLVEQMQMLDI 227

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLD----NKNLVSWNVMIAVYANNSMPAEA 283
           KP+  T  +L+        +  + V+E+F  +       +++SW  +I+ +  NS    A
Sbjct: 228 KPNLVTWNTLISGFAQAGDK--VMVQELFGLMSMHGFEPDVISWTSVISRFVQNSHNEAA 285

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
              + QM  HG  PN+ +++S+LPAC  L+ +  GR++H Y     ++ ++ + +A+VDM
Sbjct: 286 FAAFKQMLQHGAYPNSATISSLLPACASLANVRHGRELHGYAFAIGVEEDIYVRSAIVDM 345

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIA 402
           Y+KCG ++EAR +F +M  +  V+W SMI  Y   G   +A+ LF++M  +     D ++
Sbjct: 346 YSKCGLISEARMLFSKMPERHTVTWNSMIFGYANHGYCDEAIELFNQMEKTEAKKIDHLS 405

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           F +VL+ACSH  L+E G+  F +M E+YK+VPR+EH+AC++DLLGRAGK+ EAYD+IK M
Sbjct: 406 FTAVLTACSHGRLVELGQSLFLLMHEKYKIVPRLEHYACMIDLLGRAGKLSEAYDMIKTM 465

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW---- 518
           P+EP+  +WG+L+ AC  +  +D+  +AA H+  L P  +G  +LLSN+YA AG W    
Sbjct: 466 PVEPDLFVWGALLGACRQHGEIDLAEIAARHLAELEPRNAGNNMLLSNLYADAGSWENVA 525

Query: 519 ----GDVKRVRKF 527
               G  KR+RKF
Sbjct: 526 KLKMGKRKRLRKF 538



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 81/197 (41%), Gaps = 33/197 (16%)

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           AL  G+ +H  +    L  +    + L+  Y +   L+  R +FD++   +    T +I 
Sbjct: 44  ALNQGKHLHARLIVSGLASSNNFASKLISFYTETRQLSIVRKLFDRIPKPNFYQRTVLIG 103

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG--------RYYFK- 424
           AY   G   D + +FS+M    L P+     SVL AC H   L+ G        R+ F+ 
Sbjct: 104 AYSRHGFYQDVLDVFSEMQNERLRPNKFVIPSVLRACGHVFDLQTGKILHSVILRHLFES 163

Query: 425 ------IMTEQYKLVPRIEHFACLVD-------------LLGRA--GKVEEAYDLIKQMP 463
                  + + Y     +E    + D             +LG A  G  +E + L++QM 
Sbjct: 164 DVVVNTALIDMYSRCRHVEKARKVFDGMQEKDLVALNAMVLGYAQNGFAKEGFLLVEQMQ 223

Query: 464 M---EPNERIWGSLVAA 477
           M   +PN   W +L++ 
Sbjct: 224 MLDIKPNLVTWNTLISG 240


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 190/556 (34%), Positives = 304/556 (54%), Gaps = 54/556 (9%)

Query: 37  ILDKYPDIKTLKKLHAQIIIN-----QHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
           +L + P  KTL+++H Q  I+      HL S  SI LK   TY           +F  IT
Sbjct: 27  LLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQ-SISLKDF-TYSTL--------IFSHIT 76

Query: 92  -NKNVVFFNVLIRSYVNNYLYYD-ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG 149
            + N   FN+++R+    +  Y   LH+Y  M      P+ +T+P V  AC+    + + 
Sbjct: 77  PHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMA 136

Query: 150 LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQN 209
              HC V K+GLD +    N +V MY +CG    AR+V +++  KD+V+WNS+++GYA+ 
Sbjct: 137 RLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKL 196

Query: 210 GRFDEALDVC-REMESLRIKPDADTMASLLPSVTN------------------------- 243
           G   EA++V  R  E    +PD  ++ S+L +                            
Sbjct: 197 GFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYI 256

Query: 244 --------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
                   +    ++S + +F  + +++ ++WN  I+ YA N M  EA+ L+  M+ +G+
Sbjct: 257 GSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGV 316

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
           +PN +++ +VL AC  + AL LG+++  Y   + LQ ++ +  AL+DMYAKCGSL  A+ 
Sbjct: 317 DPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQR 376

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC--PDSIAFVSVLSACSHA 413
           VF+ M  ++  SW +MISA    G+  +A++LF +M   G    P+ I FVS+LSAC HA
Sbjct: 377 VFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHA 436

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           GL++EG   F +M+  + LVP+IEH++C+VDLL RAG + EA+D+I++MP +P+    G+
Sbjct: 437 GLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGA 496

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           L +AC    N+DIG      +  L P+ SG Y++ S IY     W D  R+R  M   G+
Sbjct: 497 LHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGV 556

Query: 534 KKMPGAS-VEMNDQVQ 548
            K PG S +E+ +Q++
Sbjct: 557 TKTPGCSWIEVGNQLR 572


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 171/491 (34%), Positives = 276/491 (56%), Gaps = 33/491 (6%)

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
           ++ VF ++   N+  +N +IR  V+   + DA+H+Y +M   GF P+ +T P VLKAC+ 
Sbjct: 67  SKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACAR 126

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
              + +GL+IH  +VK G D+++F    L+++Y KC    +A +V +D+P K+VV+W ++
Sbjct: 127 KLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAI 186

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN----TSPE----------- 247
           + GY  +G F EA+   +++  + +KPD+ ++  +L +       TS E           
Sbjct: 187 ITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGM 246

Query: 248 --NVL---SVKEMFLKLDN-------------KNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
             NV    S+ +M++K  N             K++VSW+ MI  YA N +P +A+DL+ Q
Sbjct: 247 GRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQ 306

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M+   ++P+  ++  VL AC  L AL LG      ++R +   N  L  AL+DMY+KCGS
Sbjct: 307 MQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           +T+A  +F  M+ +D V W +M+    M+G      +LFS +   G+ PD   F+ +L  
Sbjct: 367 VTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCG 426

Query: 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNER 469
           C+H G + EGR +F  M   + L P IEH+ C+VDLLGRAG + EA+ LI  MPM+PN  
Sbjct: 427 CTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAV 486

Query: 470 IWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529
           +WG+L+  C L+ +  +       +  L P  SG YV LSNIY+   RW + +++R  M 
Sbjct: 487 VWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMK 546

Query: 530 SKGIKKMPGAS 540
            + I+K+   S
Sbjct: 547 EQQIQKIRACS 557


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 171/491 (34%), Positives = 276/491 (56%), Gaps = 33/491 (6%)

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
           ++ VF ++   N+  +N +IR  V+   + DA+H+Y +M   GF P+ +T P VLKAC+ 
Sbjct: 67  SKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACAR 126

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
              + +GL+IH  +VK G D+++F    L+++Y KC    +A +V +D+P K+VV+W ++
Sbjct: 127 KLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAI 186

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN----TSPE----------- 247
           + GY  +G F EA+   +++  + +KPD+ ++  +L +       TS E           
Sbjct: 187 ITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGM 246

Query: 248 --NVL---SVKEMFLKLDN-------------KNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
             NV    S+ +M++K  N             K++VSW+ MI  YA N +P +A+DL+ Q
Sbjct: 247 GRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQ 306

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M+   ++P+  ++  VL AC  L AL LG      ++R +   N  L  AL+DMY+KCGS
Sbjct: 307 MQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           +T+A  +F  M+ +D V W +M+    M+G      +LFS +   G+ PD   F+ +L  
Sbjct: 367 VTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCG 426

Query: 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNER 469
           C+H G + EGR +F  M   + L P IEH+ C+VDLLGRAG + EA+ LI  MPM+PN  
Sbjct: 427 CTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAV 486

Query: 470 IWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529
           +WG+L+  C L+ +  +       +  L P  SG YV LSNIY+   RW + +++R  M 
Sbjct: 487 VWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMK 546

Query: 530 SKGIKKMPGAS 540
            + I+K+   S
Sbjct: 547 EQQIQKIRACS 557


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 183/514 (35%), Positives = 288/514 (56%), Gaps = 23/514 (4%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIG-LKLMRTYGACGQMVDTRH-VFDEITNKNVVFFNVL 101
           I  L + HA I+ +  +HS  +   L    +  +  Q +   H +F  I N N   +N +
Sbjct: 20  ISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTI 79

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           IR+Y N+     AL ++  M      PD YT+   LK+C   + +  G QIH  V+K GL
Sbjct: 80  IRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGL 139

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR-------FDE 214
             +LF  N L+ +Y  CGC+++AR +L+ M  +DVV+WN++++ YA+ G        FDE
Sbjct: 140 GDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDE 199

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
             +  R +ES            LL              + +F +   KN+VSWN MI  Y
Sbjct: 200 MTE--RNVESWNFMISGYVGVGLLEEA-----------RRVFGETPVKNVVSWNAMITGY 246

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           ++    +E + L+  M+  G++P+  ++ SVL AC  + AL  G  +H Y+++  +  + 
Sbjct: 247 SHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDG 306

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            +  ALVDMY+KCGS+ +A  VF+    +D+ +W S+IS     G G  A+ +FS+ML+ 
Sbjct: 307 FVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVE 366

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           G  P+ + FV VLSACS AGLL+EGR  F +M   + + P IEH+ C+VDLLGR G +EE
Sbjct: 367 GFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEE 426

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A +L+++MP +    +W SL+ AC  + N+++    A  +  L+P +S  +V LSN+YA 
Sbjct: 427 AEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYAS 486

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
            GRW DV  VR+ M ++G++K PG S +E++  V
Sbjct: 487 MGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTV 520



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 174/385 (45%), Gaps = 21/385 (5%)

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA---MYGKCGCLKEARRVLND 190
           P +L     + S+    Q H  ++K GL ++ F  + L+A          +  A  + + 
Sbjct: 8   PPILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSR 67

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP-ENV 249
           +P+ +   WN+++  YA +   + AL +  +M    + PD  T    L S  + S  E  
Sbjct: 68  IPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEG 127

Query: 250 LSVKEMFLKLD-NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
             +    LK     +L   N +I +YA+     +A  L  +M    +E + +S  ++L A
Sbjct: 128 RQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRM----LERDVVSWNALLSA 183

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
             +   + L    H + E    + N+   N ++  Y   G L EAR VF +   ++VVSW
Sbjct: 184 YAERGLMELA--CHLFDEMT--ERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSW 239

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            +MI+ Y  +G+  + + LF  M  +G+ PD+   VSVLSAC+H G L +G +    +  
Sbjct: 240 NAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYID- 298

Query: 429 QYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD- 485
             K    I+ F    LVD+  + G +E+A ++     +  +   W S+++    + +   
Sbjct: 299 --KNGISIDGFVATALVDMYSKCGSIEKALEVFNSC-LRKDISTWNSIISGLSTHGSGQH 355

Query: 486 -IGILAADHIFHLAPNQSGYYVLLS 509
            + I +   +    PN+  +  +LS
Sbjct: 356 ALQIFSEMLVEGFKPNEVTFVCVLS 380


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 187/569 (32%), Positives = 314/569 (55%), Gaps = 39/569 (6%)

Query: 14  TKPVQALVLSTQYTLLSG-DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMR 72
           ++ ++A V++  YT  +   AC D       IK   ++HA I+ +  +  +  +   L+ 
Sbjct: 149 SEMLKAGVVTNTYTFAAALQACED----SSFIKLGMQIHAAILKSGRV-LDVYVANALVA 203

Query: 73  TYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYT 132
            Y   G+M +   +F  +  K++V +N ++  ++ N LY +AL  + ++      PD  +
Sbjct: 204 MYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVS 263

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
              ++ A      LL G +IH   +K G D N+  GN L+ MY KC C+    R  + M 
Sbjct: 264 IISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMA 323

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL-------------- 238
            KD+++W +  AGYAQN  + +AL++ R+++   +  DA  + S+L              
Sbjct: 324 HKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKE 383

Query: 239 ------------PSVTNTSPEN------VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                       P + NT  +       +     +F  ++ K++VSW  MI+ Y +N + 
Sbjct: 384 IHGYTIRGGLSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLA 443

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            +A++++  M+  G+EP+ +++ S+L A   LS L  G++IH ++ RK       + N L
Sbjct: 444 NKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTL 503

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           VDMYA+CGS+ +A  +F   + ++++ WT+MISAYGM G G  AV LF +M    + PD 
Sbjct: 504 VDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDH 563

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           I F+++L ACSH+GL+ EG+ + +IM  +Y+L P  EH+ CLVDLLGR   +EEAY ++K
Sbjct: 564 ITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVK 623

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD 520
            M  EP   +W +L+ AC ++SN +IG +AA+ +  L  +  G YVL+SN++A  GRW D
Sbjct: 624 SMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKD 683

Query: 521 VKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           V+ VR  M   G+ K PG S +E+ +++ 
Sbjct: 684 VEEVRMRMKGSGLTKNPGCSWIEVGNKIH 712



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 239/443 (53%), Gaps = 39/443 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKN-VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
           L+  Y  C  +   R +FD +  +N VV +N +I +Y  N +  +AL ++  M   G   
Sbjct: 99  LVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVT 158

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           + YT+   L+AC  S+ + +G+QIH +++K G   +++  N LVAMY + G + EA  + 
Sbjct: 159 NTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIF 218

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP--------- 239
            ++  KD+VTWNSM+ G+ QNG + EAL+   ++++  +KPD  ++ S++          
Sbjct: 219 GNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLL 278

Query: 240 --------SVTNTSPENVL---SVKEMFLK-------------LDNKNLVSWNVMIAVYA 275
                   ++ N    N+L   ++ +M+ K             + +K+L+SW    A YA
Sbjct: 279 NGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYA 338

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            N    +A++L  Q+++ G++ +A  + S+L AC  L+ L   ++IH Y  R  L   + 
Sbjct: 339 QNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPV- 397

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           L+N ++D+Y +CG +  A  +F+ + C+DVVSWTSMIS Y  +G    A+ +FS M  +G
Sbjct: 398 LQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETG 457

Query: 396 LCPDSIAFVSVLSA-CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           L PD +  VS+LSA CS + L +    +  I+ + + L   I +   LVD+  R G VE+
Sbjct: 458 LEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISN--TLVDMYARCGSVED 515

Query: 455 AYDLIKQMPMEPNERIWGSLVAA 477
           AY +        N  +W ++++A
Sbjct: 516 AYKIF-TCTKNRNLILWTAMISA 537



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 190/371 (51%), Gaps = 34/371 (9%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           YG CG ++D   +FD+++ +++  +N ++  YV+N     AL +Y+ M   G   D YT+
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
           P +LKAC     L  G +IH   +K G D  +F  N LVA+Y KC  +  AR++ + M  
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 194 K-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS------- 245
           + DVV+WNS+++ Y+ NG   EAL +  EM    +  +  T A+ L +  ++S       
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181

Query: 246 -------PENVLSV-------------------KEMFLKLDNKNLVSWNVMIAVYANNSM 279
                     VL V                     +F  L+ K++V+WN M+  +  N +
Sbjct: 182 IHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGL 241

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
            +EA++ +  ++   ++P+ +S+ S++ A G L  LL G++IH Y  +     N+ + N 
Sbjct: 242 YSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNT 301

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           L+DMYAKC  ++     FD M  +D++SWT+  + Y  +     A+ L  ++ M G+  D
Sbjct: 302 LIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVD 361

Query: 400 SIAFVSVLSAC 410
           +    S+L AC
Sbjct: 362 ATMIGSILLAC 372



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 140/281 (49%), Gaps = 34/281 (12%)

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MYGKCG + +A  + + M  + + TWN+M+ GY  NG    AL++ REM  L +  D+ T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 234 MASLLPS---------------------------VTNT------SPENVLSVKEMFLKLD 260
              LL +                           V N+         ++   +++F ++ 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 261 NKN-LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
            +N +VSWN +I+ Y+ N M  EA+ L+ +M   G+  N  + A+ L AC D S + LG 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
           +IH  + +     ++ + NALV MY + G + EA  +F  +  +D+V+W SM++ +  +G
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
              +A+  F  +  + L PD ++ +S++ A    G L  G+
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGK 281



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 22/198 (11%)

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MY KCGS+ +A  +FD+M  + + +W +M+  Y  +G+   A+ ++ +M   G+  DS  
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 403 FVSVLSACSHAGLLEEGRYYFKI--MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           F  +L AC   G++E+     +I  +  +Y     +     LV L  +   +  A  L  
Sbjct: 61  FPVLLKAC---GIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFD 117

Query: 461 QMPMEPNERIWGSLVA----------ACCLYSNM-DIGILAADHIFHLAPN---QSGYYV 506
           +M +  +   W S+++          A CL+S M   G++   + F  A      S +  
Sbjct: 118 RMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIK 177

Query: 507 LLSNIYA---KAGRWGDV 521
           L   I+A   K+GR  DV
Sbjct: 178 LGMQIHAAILKSGRVLDV 195


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 183/533 (34%), Positives = 295/533 (55%), Gaps = 35/533 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   +++H ++I    L  +  IG  L+  Y   G +     VF E+  +++V +N +I
Sbjct: 141 DLAEGERVHGKVI-KSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMI 199

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             YV+    + +L  ++ M   G   D ++   +L ACS    L  G +IHC +++  L+
Sbjct: 200 SGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLE 259

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++     LV MY KCG +  A R+ + +  K +V WN+M+ GY+ N +  E+    R+M
Sbjct: 260 LDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKM 319

Query: 223 -ESLRIKPDADTMASLLPSVTNTS------------------PENVLSV----------- 252
            E  ++ PD  TM +LLP                        P  VL             
Sbjct: 320 QEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGK 379

Query: 253 ----KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
               + +F +++ +NL+SWN MIA Y  N    +A+ L+  +    ++P+A ++AS+LPA
Sbjct: 380 LKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPA 439

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
             +L++L    +IH YV + KL  N  + N++V MY KCG+L  AR +FD+M  +DV+SW
Sbjct: 440 YAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISW 499

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            ++I AY + G G  ++ LFS+M   G  P+   FVS+L +CS AGL+ EG  YF  M  
Sbjct: 500 NTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKR 559

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
            Y + P IEH+ C++DL+GR G ++ A + I++MP+ P  RIWGSL+ A     ++++  
Sbjct: 560 DYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAE 619

Query: 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           +AA+HI  L  + +G YVLLSN+YA+AGRW DV+R++  M  +G++K  G SV
Sbjct: 620 IAAEHILSLEHDNTGCYVLLSNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSV 672



 Score =  228 bits (580), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 138/476 (28%), Positives = 241/476 (50%), Gaps = 38/476 (7%)

Query: 69  KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
           + + +Y   G M +   +F+ +   +   +NV+IR +V+N L++DA+  Y  M   G   
Sbjct: 65  RALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRG 124

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D +TYP V+KAC G   L  G ++H  V+K GLD +++ GN L+ MY K GC++ A  V 
Sbjct: 125 DNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVF 184

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS-------- 240
            +MP +D+V+WNSM++GY   G    +L   REM++  IK D  ++  +L +        
Sbjct: 185 REMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLR 244

Query: 241 ------------------VTNTSPENVLS-------VKEMFLKLDNKNLVSWNVMIAVYA 275
                             +  TS  ++ +        + +F ++ +K++V+WN MI  Y+
Sbjct: 245 NGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYS 304

Query: 276 NNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
            N+   E+     +M+  G + P+ I++ ++LP C  L A+LLG+ +H +  R    P+L
Sbjct: 305 LNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHL 364

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            LE ALVDMY +CG L  A  +F QM  ++++SW +MI++Y  +G+   A+ LF  +   
Sbjct: 365 VLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNK 424

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
            L PD+    S+L A +    L E       +T + KL         +V + G+ G +  
Sbjct: 425 TLKPDATTIASILPAYAELASLREAEQIHGYVT-KLKLDSNTFVSNSIVFMYGKCGNLLR 483

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCL--YSNMDIGILAADHIFHLAPNQSGYYVLL 508
           A ++  +M  + +   W +++ A  +  +  + I + +        PN S +  LL
Sbjct: 484 AREIFDRMTFK-DVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLL 538



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 9/177 (5%)

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENAL-----VDMYAKCGSLTEARTVFDQMR 361
           P     + L+L  +I +    K+ Q  L   N++     +  Y + G +  A  +F+ MR
Sbjct: 28  PQTNPDTDLILKPRIFKTARSKRNQSFLVERNSVSLTRALSSYVERGYMKNALDLFENMR 87

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-R 420
             D   W  MI  +  +G  +DAV  + +M   G+  D+  +  V+ AC     L EG R
Sbjct: 88  QCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGER 147

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            + K++     L   I +   L+ +  + G +E A  + ++MP+  +   W S+++ 
Sbjct: 148 VHGKVIKSGLDLDIYIGN--SLIIMYAKIGCIESAEMVFREMPVR-DLVSWNSMISG 201


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 172/515 (33%), Positives = 294/515 (57%), Gaps = 39/515 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G++     VF +I  K+ + +N ++  YV N  Y +A+  +  M  HGF PD
Sbjct: 307 LLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPD 366

Query: 130 CYTYPCVLKACSGSNSLLV---GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR 186
              + CV+   S    L     G + H   +K  L  +L  GN L+ MY KCG ++ + +
Sbjct: 367 ---HACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAK 423

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS------ 240
           V   M  +D ++W +++A +AQ+ R  EAL++  E++   I  D+  + S+L +      
Sbjct: 424 VFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKS 483

Query: 241 -----------VTNTSPENVLSVK---------------EMFLKLDNKNLVSWNVMIAVY 274
                      + N   + +L  +                +F +++ K++VSW  MI   
Sbjct: 484 ISLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCC 543

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
            NN     AV L+ +M+   I+P+++++ S+L A   LS+L  G+++H ++ R+      
Sbjct: 544 TNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEG 603

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + ++LVDMY+ CGS+  A  VF++ +C+DVV WT+MI+A GM G G  A+ LF +ML +
Sbjct: 604 PVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQT 663

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           GL PD ++F+++L ACSH+ L+EEG++Y  IM  +Y+L P  EH+AC+VD+LGR+G+ EE
Sbjct: 664 GLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEE 723

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           AY+ IK MPM+P   +W +L+ AC ++ N  + ++AA+ +  L P+  G Y+L+SN++A+
Sbjct: 724 AYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAE 783

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            G+W + K  R  M  +G++K P  S +E+ + + 
Sbjct: 784 MGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIH 818



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 139/474 (29%), Positives = 234/474 (49%), Gaps = 50/474 (10%)

Query: 48  KKLHAQIIINQHLHSNPS--IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           +++HA  +    L+ +    +  KL+  YG CG++ D R +F+ +  + V  +N L+ +Y
Sbjct: 77  RQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAY 136

Query: 106 VNNYLYYDALHVYKNM---SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
           +++    +A+ VY  M   +  G  PD  T   VLKAC        G ++H   VKVGLD
Sbjct: 137 LSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLD 196

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLN--DMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
            +    N L+ MY KCG L  A RV       ++DV +WNS+V+G  QNGR  EAL + R
Sbjct: 197 KSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFR 256

Query: 221 EMESLRIKPDADTMASLLP----------------------SVTNTSPENVL-------- 250
            M+S     ++ T  ++L                       S  N     +L        
Sbjct: 257 GMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVMYAKYGR 316

Query: 251 --SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
             S   +F ++  K+ +SWN M++ Y  NS  AEA+D + +M  HG +P+   V S+  A
Sbjct: 317 VDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSA 376

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
            G LS L  GR+ H Y  +++L  +L++ N L+DMY KCGS+  +  VF+ M  +D +SW
Sbjct: 377 LGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISW 436

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC---SHAGLLEEGRYYFKI 425
           T++++ +  S +  +A+ +  ++   G+  DS+   S+L  C       LL++   Y  I
Sbjct: 437 TTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCY-AI 495

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI-WGSLVAAC 478
                 L+        L+D+ G  G+ + + +L ++  +E  + + W S++  C
Sbjct: 496 RNGLLDLILENR----LIDIYGECGEFDHSLNLFQR--VEKKDIVSWTSMINCC 543



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 153/347 (44%), Gaps = 36/347 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++ HA   I Q LH++  +G  LM  Y  CG +  +  VF+ +  ++ + +  ++  +  
Sbjct: 387 REFHA-YAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQ 445

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +  + +AL +   +   G   D      +L+ C G  S+ +  Q+HC  ++ GL  +L  
Sbjct: 446 SSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGL-LDLIL 504

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ +YG+CG    +  +   +  KD+V+W SM+     NGR + A+ +  EM+   I
Sbjct: 505 ENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANI 564

Query: 228 KPDADTMASLLPSVTNTSPEN--------------------VLSVKEM------------ 255
           +PD+  + S+L ++   S                       V S+ +M            
Sbjct: 565 QPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIR 624

Query: 256 -FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
            F +   K++V W  MI     +    +A+DL+ +M   G+ P+ +S  ++L AC     
Sbjct: 625 VFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKL 684

Query: 315 LLLGRK-IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           +  G+  +   V + +L+P       +VD+  + G   EA      M
Sbjct: 685 VEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTM 731



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 2/201 (0%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           I  LK++H   I N  L  +  +  +L+  YG CG+   + ++F  +  K++V +  +I 
Sbjct: 484 ISLLKQVHCYAIRNGLL--DLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMIN 541

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
              NN     A+ ++  M      PD      +L A +G +SL  G Q+H  +++     
Sbjct: 542 CCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPI 601

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
                + LV MY  CG +  A RV      KDVV W +M+     +G   +A+D+ + M 
Sbjct: 602 EGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRML 661

Query: 224 SLRIKPDADTMASLLPSVTNT 244
              + PD  +  +LL + +++
Sbjct: 662 QTGLTPDHVSFLALLYACSHS 682



 Score = 38.9 bits (89), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 2/146 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H  +I        P +   L+  Y  CG M     VF+    K+VV +  +I +   
Sbjct: 588 KQVHGFLIRRNFPIEGPVVS-SLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGM 646

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ-IHCSVVKVGLDYNLF 166
           +     A+ ++K M   G  PD  ++  +L ACS S  +  G   +   V K  L     
Sbjct: 647 HGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQE 706

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMP 192
           +   +V + G+ G  +EA   +  MP
Sbjct: 707 HYACVVDILGRSGQTEEAYEFIKTMP 732


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 193/532 (36%), Positives = 290/532 (54%), Gaps = 28/532 (5%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD-TRHVFDEITNKNV 95
           +L K      + ++HAQ+I   +L S+     +L+ +  +    V+    VF +I   N 
Sbjct: 17  LLQKSKTSSQILQIHAQLITT-NLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNS 75

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
              N +++ Y  +     AL  Y  M   G   D YTYP VLKAC     LL G  +   
Sbjct: 76  FICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGE 135

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
            VK G   ++F  NGL++MY +CG    AR V +    KD+V+WNSM+ GY   G  + A
Sbjct: 136 AVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENA 195

Query: 216 LDVCREM--------------------ESLRIKPDADTMASLLPSVTNTSPENVLSVKEM 255
            ++  EM                    E  R +   D+M +      N+  +    V EM
Sbjct: 196 QNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEM 255

Query: 256 ------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                 F K+  KN++SW++MI  YA +    EA++L+ QM   GI+P+ +SV   + AC
Sbjct: 256 EVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSAC 315

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L AL  GR IH Y++R ++  ++ ++ ALVDMY KCGS  EAR +F+ M  ++VVSW 
Sbjct: 316 SQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPERNVVSWN 375

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
            MI   GM+G G +A+  F++M M  +  D + F+ VL ACSHA L+ EG + F  M   
Sbjct: 376 VMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGV 435

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y+L P++EH+ CLVDLLGRAG++++  ++I+ MPM+PN  +WGSL+ AC ++ N+ +  +
Sbjct: 436 YRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEI 495

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
             + +  L  + SG YVL+SNIYA  G W  + R+RK M  + +KK  G SV
Sbjct: 496 VVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSV 547


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 168/523 (32%), Positives = 288/523 (55%), Gaps = 34/523 (6%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S+  +G  ++  Y    ++   R VFD +  ++ V +N ++   V N  + +A+ ++ +M
Sbjct: 139 SDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDM 198

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              G   D  T   VL   +    L +G+ I C  +KVG   + +   GL  +Y KCG +
Sbjct: 199 VKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEI 258

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP-- 239
           + AR +   +   D+V++N+M++GY  N   + ++ + +E+     K ++ ++  L+P  
Sbjct: 259 ETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVF 318

Query: 240 -------------------------------SVTNTSPENVLSVKEMFLKLDNKNLVSWN 268
                                          +   +    + S + +F +   K+L SWN
Sbjct: 319 FPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWN 378

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
            MI+ YA N +  +A+ L+ +M+   + PN ++V S+L AC  L AL LG+ +H  + R+
Sbjct: 379 AMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRE 438

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
             + N+ +  AL+DMYAKCGS+TEA+ +F  M  ++ V+W +MIS YG+ G G++A+ LF
Sbjct: 439 SFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLF 498

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
           ++ML S + P  + F+SVL ACSHAGL+ EG   F+ M   +   P  EH+AC+VDLLGR
Sbjct: 499 NEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGR 558

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508
           AG +++A D I++MP+EP   +WG+L+ AC ++ + ++  LA+D +F L P   GYYVLL
Sbjct: 559 AGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLL 618

Query: 509 SNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           SNIY+    + +   VR  +  + + K PG + +E+ + + I 
Sbjct: 619 SNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIF 661



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 139/539 (25%), Positives = 248/539 (46%), Gaps = 46/539 (8%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           ++++   +  L + HAQII+N  LH++     KL         +     +F  I N ++ 
Sbjct: 16  LINRVSTLHQLNQTHAQIILNG-LHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLF 74

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
            +NVLIR++  N     A+ +Y ++      +PD +TY  V+   S     L+      S
Sbjct: 75  LYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAH--S 132

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           +V  G   +LF G+ +VA Y K   +  AR+V + M  +D V WN+MV+G  +N  FDEA
Sbjct: 133 IV-AGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEA 191

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTN-------------------------------- 243
           + +  +M    I  D+ T+A++LP V                                  
Sbjct: 192 ILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACL 251

Query: 244 -TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
            +    + + + +F ++   +LVS+N MI+ Y  N+    +V L+ ++ V G + N+ S+
Sbjct: 252 YSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSI 311

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
             ++P       L L R IH +  +  +  N  +  AL  +Y++   +  AR +FD+   
Sbjct: 312 VGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSE 371

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           + + SW +MIS Y  +G    A++LF +M    + P+ +   S+LSAC+  G L  G++ 
Sbjct: 372 KSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWV 431

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
             ++  +      I     L+D+  + G + EA  L   MP E N   W ++++   L+ 
Sbjct: 432 HDLINRE-SFESNIFVSTALIDMYAKCGSITEAQRLFSMMP-EKNAVTWNAMISGYGLHG 489

Query: 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYA--KAG--RWGDVKRVRKFMNSKGIKKMP 537
                +   + + H   + +G    LS +YA   AG  R GD +  R  ++  G + +P
Sbjct: 490 YGHEALNLFNEMLHSRVSPTG-VTFLSVLYACSHAGLVREGD-EIFRSMVHDHGFEPLP 546


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 189/578 (32%), Positives = 307/578 (53%), Gaps = 52/578 (8%)

Query: 16  PVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG 75
           PVQ +V     TLL   +C +        + L ++ AQI+ +  L  N  +    + T  
Sbjct: 6   PVQRIVEEKFITLLR--SCKNY-------ERLHQIQAQIVTHG-LEHNDFVAPNFITTCS 55

Query: 76  ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC 135
              ++   R +FD+I   N   +N + R Y+ N  + D + ++  ++     P+C+T+P 
Sbjct: 56  RFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPM 115

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
           ++K+C     +  G ++HC   K G   N F    L+ MY K GC+++A +V  +M  ++
Sbjct: 116 IIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERN 175

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT-MASLLPSVTNTSPENVLSVKE 254
           VV W +++ GY   G      DV        + P+ D  M S+L S      +N+ + +E
Sbjct: 176 VVVWTAIINGYILCG------DVVSGRRLFDLAPERDVVMWSVLIS-GYIESKNMAAARE 228

Query: 255 MFLKLDNKNLVSWNVM-------------------------------IAVYANNSMPAEA 283
           +F K+ N++ +SWN M                               I  Y  N + +E 
Sbjct: 229 LFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSET 288

Query: 284 VDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           ++ + +M V G + PN  ++ +VL AC  L AL +G+ +H Y E    + NL + N L+D
Sbjct: 289 LESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLID 348

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MYAKCG +  A  VF+ +  +D++SW ++I+   + G   DA+ +F +M   G  PD + 
Sbjct: 349 MYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVT 408

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           FV +LSAC+H GL+++G  YFK M + Y +VP+IEH+ C+VDLLGRAG +++A + I++M
Sbjct: 409 FVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKM 468

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
           P+EP+  IW +L+ AC LY N++I  LA   +  L PN    +V++SNIY   GR  DV 
Sbjct: 469 PIEPDAVIWAALLGACRLYKNVEIAELALQRLIELEPNNPANFVMVSNIYKDLGRSEDVA 528

Query: 523 RVRKFMNSKGIKKMPGASV-EMNDQ-VQIIALPLRSSK 558
           R++  M   G +K+PG SV E ND  V+  +L  R S+
Sbjct: 529 RLKIAMRDTGFRKLPGCSVIECNDSVVEFYSLDERHSE 566


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 171/506 (33%), Positives = 277/506 (54%), Gaps = 38/506 (7%)

Query: 37  ILDKYPDIKTLKKLHAQII-INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNV 95
           +L +  +++ L+++H Q++     L   P+  L         G +   R VFD I   N 
Sbjct: 24  LLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNT 83

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
             +N +IR Y N+    +AL +Y +M  H    + YT+P +LKACS  ++L    QIH  
Sbjct: 84  FMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAH 143

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           ++K+G    ++  N L+ +Y K G +K AR + + +  +D V+WNSM+ GY + G  + A
Sbjct: 144 IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMA 203

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
                                                 E+F  +  +N++SW  MI+   
Sbjct: 204 Y-------------------------------------EIFNHMPERNIISWTSMISGCV 226

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
               P EA++L+ +M+  GI+ + +++ S L AC DL  L  G+ IH Y+++ +++ +  
Sbjct: 227 GAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPI 286

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           L   L+DMYAKCG L EA  VF +M  + V  WT+MIS Y + G+G +A+  F KM  +G
Sbjct: 287 LGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAG 346

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + P+ + F  +L+ACSHAGL+ E +  F+ M   +   P IEH+ C+VDLLGRAG ++EA
Sbjct: 347 VEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEA 406

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
            +LI+ MP++PN  IWG+L+ AC ++ N+++G      +  + P   G Y+ L++I+A A
Sbjct: 407 EELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAA 466

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGASV 541
           G W    RVR+ M  +G+ K+PG SV
Sbjct: 467 GEWNQAARVRRQMKEQGVSKLPGCSV 492



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 152/335 (45%), Gaps = 16/335 (4%)

Query: 36  DILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNV 95
           ++  K  DIK+ + L  Q+     +  N      ++  Y  CG++     +F+ +  +N+
Sbjct: 161 NVYSKSGDIKSARLLFDQVDQRDTVSWN-----SMIDGYTKCGEIEMAYEIFNHMPERNI 215

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
           + +  +I   V      +AL+++  M   G   D       L+AC+    L  G  IH  
Sbjct: 216 ISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAY 275

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           + K  ++ +   G  L+ MY KCG L+EA  V   M  K V  W +M++GYA +GR  EA
Sbjct: 276 IKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREA 335

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD-----NKNLVSWNVM 270
           L+   +M++  ++P+  T   +L + ++     V   K +F  ++       ++  +  M
Sbjct: 336 LEWFMKMQTAGVEPNQMTFTGILTACSHAGL--VHEAKLLFESMERIHGFKPSIEHYGCM 393

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
           + +     +  EA +L   M V   +PNA    ++L AC     L LG++I + + +   
Sbjct: 394 VDLLGRAGLLKEAEELIENMPV---KPNAAIWGALLNACHIHGNLELGKQIGKILIQVDP 450

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
               R  + L  ++A  G   +A  V  QM+ Q V
Sbjct: 451 GHGGRYIH-LASIHAAAGEWNQAARVRRQMKEQGV 484


>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g05240-like [Glycine max]
          Length = 552

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 181/500 (36%), Positives = 275/500 (55%), Gaps = 42/500 (8%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VF +I   +V  +N +IR +VNN+    ++ +Y+ +  +G+ PD +T+P VLKAC     
Sbjct: 49  VFRQIDAPSVYIWNSMIRGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVLKACCAIAD 108

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
              G  IHC +VK G + + +   GL+ MY  C  +K   +V +++P  +VV W  ++AG
Sbjct: 109 QDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVVAWTCLIAG 168

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLL-------------------------PS 240
           Y  N +  EAL V ++M    ++P+  TM + L                         P 
Sbjct: 169 YVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIXCARSRDFDTGQWVHQHIRKAGYDPF 228

Query: 241 VTNTSPENVLSV---------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285
           ++ ++   +L+                +++F K+  +N+VSWN MI  Y       EA+D
Sbjct: 229 MSTSNSNIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALD 288

Query: 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
           L+  M   GI P+  +  SVL  C  L AL LG+ +H Y+ +  +  ++ L  AL+DMYA
Sbjct: 289 LFFDMWTSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISLATALLDMYA 348

Query: 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM-SGLCPDSIAFV 404
           K G L  A+ +F  ++ +DVV WTSMI+   M G G +A+ +F  M   S L PD I ++
Sbjct: 349 KTGGLGSAQKIFSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTMHEDSSLVPDHITYI 408

Query: 405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM 464
            VL ACSH GL+EE + +F++MTE Y +VP  EH+ C+VDLL R+G   EA  L++ M +
Sbjct: 409 GVLFACSHVGLVEEAKKHFRLMTEMYSIVPGREHYGCMVDLLSRSGHFGEAERLMETMAI 468

Query: 465 EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV 524
           +PN  I G+L+  C ++ N+ +     + +  L   QSG +VLLSNIYAKAGRW DV   
Sbjct: 469 QPNISIXGALLYGCQIHENLXVANQVKERLTELESCQSGAHVLLSNIYAKAGRWEDVNGT 528

Query: 525 RKFMNSKGIKKMPG-ASVEM 543
           RK M  K I K+ G +SVEM
Sbjct: 529 RKVMKHKRITKIIGHSSVEM 548



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 153/355 (43%), Gaps = 42/355 (11%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           I+     ++      L+  Y +C  M     VFD I   NVV +  LI  YVNN   Y+A
Sbjct: 119 IVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVVAWTCLIAGYVNNNQPYEA 178

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD-------YNLFN 167
           L V+K+MS  G +P+  T    L  C+ S     G  +H  + K G D        N+  
Sbjct: 179 LKVFKDMSHCGVEPNEITMVNALIXCARSRDFDTGQWVHQHIRKAGYDPFMSTSNSNIIL 238

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              ++ MY KCG  K AR + N MP +++V+WNSM+  Y Q  R  EALD+  +M +  I
Sbjct: 239 ATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFDMWTSGI 298

Query: 228 KPDADTMASLLPSV----------------------TNTSPENVL-----------SVKE 254
            PD  T  S+L                         T+ S    L           S ++
Sbjct: 299 YPDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISLATALLDMYAKTGGLGSAQK 358

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDLS 313
           +F  L  +++V W  MI   A +    EA+ ++  M E   + P+ I+   VL AC  + 
Sbjct: 359 IFSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTMHEDSSLVPDHITYIGVLFACSHVG 418

Query: 314 ALLLGRKIHRYV-ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
            +   +K  R + E   + P       +VD+ ++ G   EA  + + M  Q  +S
Sbjct: 419 LVEEAKKHFRLMTEMYSIVPGREHYGCMVDLLSRSGHFGEAERLMETMAIQPNIS 473



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 148/320 (46%), Gaps = 17/320 (5%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           SN  +   ++  Y  CG     R +F+++  +N+V +N +I +Y     + +AL ++ +M
Sbjct: 234 SNIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFDM 293

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              G  PD  T+  VL  C+   +L +G  +H  + K G+  ++     L+ MY K G L
Sbjct: 294 WTSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISLATALLDMYAKTGGL 353

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPDADTMASLLPS 240
             A+++ + +  +DVV W SM+ G A +G  +EAL + + M E   + PD  T   +L +
Sbjct: 354 GSAQKIFSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTMHEDSSLVPDHITYIGVLFA 413

Query: 241 VTNT-----SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
            ++      + ++   + EM+  +  +    +  M+ + + +    EA  L   ME   I
Sbjct: 414 CSHVGLVEEAKKHFRLMTEMYSIVPGRE--HYGCMVDLLSRSGHFGEAERL---METMAI 468

Query: 296 EPNAISVASVLPACGDLSALLLGRKI-HRYVERKKLQPNLRLENALVDMYAKCGSLTE-- 352
           +PN     ++L  C     L +  ++  R  E +  Q    +   L ++YAK G   +  
Sbjct: 469 QPNISIXGALLYGCQIHENLXVANQVKERLTELESCQSGAHV--LLSNIYAKAGRWEDVN 526

Query: 353 -ARTVFDQMRCQDVVSWTSM 371
             R V    R   ++  +S+
Sbjct: 527 GTRKVMKHKRITKIIGHSSV 546


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 181/499 (36%), Positives = 279/499 (55%), Gaps = 43/499 (8%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH--VFDEITNKNVVFFNVLIRS 104
           +K++HA II N  L     +  KL+R        + +    VF ++   N   +  +IR 
Sbjct: 58  IKQVHAHIIRNG-LSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRG 116

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDY 163
           Y    L  ++ + Y  M   G  P  +T+  + KAC  + ++ +G Q+H   + +G    
Sbjct: 117 YALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFAS 176

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           +L+ GN ++ +Y KCG L  AR+V ++M  +DVV+W  ++  YA+ G          +ME
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYG----------DME 226

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
           S                              +F  L  K++V+W  M+  YA N  P EA
Sbjct: 227 S---------------------------ASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEA 259

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP--NLRLENALV 341
           ++ + +M+  G+E + +++A V+ AC  L A+     I    ER    P  N+ + +AL+
Sbjct: 260 LEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALI 319

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           DMY+KCGS  EA  VF+ M+ ++V S++SMI  Y M G+ + A+ LF  ML + + P+ +
Sbjct: 320 DMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKV 379

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
            F+ +LSACSHAGL+E+GR  F  M + + + P  +H+AC+VDLLGRAG +EEA DL+K 
Sbjct: 380 TFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKT 439

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
           MPMEPN  +WG+L+ AC ++ N DI  +AA+ +F L PN  G Y+LLSNIYA AGRW +V
Sbjct: 440 MPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEV 499

Query: 522 KRVRKFMNSKGIKKMPGAS 540
            ++RK +  KG KK PG S
Sbjct: 500 SKLRKVIREKGFKKNPGCS 518


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 183/545 (33%), Positives = 289/545 (53%), Gaps = 42/545 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+K  + LHA I+  Q L  +  +G  L+  Y  C  +   R  FDE+  K +V +N LI
Sbjct: 73  DLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALI 132

Query: 103 RSYVNNYLYYDALHVYKNM---SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
             Y  N  +  AL +Y++M   S  G  PD  T+   L ACS    +  G +I    V  
Sbjct: 133 AGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVAS 192

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G   +    N L+ MY KCG L+ AR+V + + ++DV+ WN+M++GYA+ G   +AL++ 
Sbjct: 193 GYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELF 252

Query: 220 REMESLRIKPDADTMASLLPSVTNTSP----------------------ENVL------- 250
           + M     KP+  T   LL + TN                          NVL       
Sbjct: 253 QRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKC 312

Query: 251 -----SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                  +++F +L  +++++WN++I  Y       +A+D++ QM++  + PN I++++V
Sbjct: 313 SSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNV 372

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L AC  L A   G+ +H  +   + + ++ LEN+L++MY +CGSL +   VF  +R + +
Sbjct: 373 LSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSL 432

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           VSW+++I+AY   G     +  F ++L  GL  D +  VS LSACSH G+L+EG   F  
Sbjct: 433 VSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLS 492

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M   + L P   HF C+VDLL RAG++E A +LI  MP  P+   W SL++ C L+++  
Sbjct: 493 MVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTK 552

Query: 486 IGILAADHIFHL-APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEM 543
                AD +F L + ++     LLSN+YA+AGRW DV++ R   N +  +K PG S +E+
Sbjct: 553 RAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTR---NRRAARKNPGCSYIEI 609

Query: 544 NDQVQ 548
           ND V 
Sbjct: 610 NDTVH 614



 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 133/463 (28%), Positives = 242/463 (52%), Gaps = 45/463 (9%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           YG CG + D   VF  I + N V + +++ ++  N  Y +AL  Y+ M + G  PD   +
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
              +  CS S  L  G  +H  +++   L++++  G  L+ MY +C  L+ AR+  ++M 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR---IKPDADTMASLLPS--------- 240
            K +VTWN+++AGY++NG    AL + ++M S     +KPDA T +S L +         
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQ 181

Query: 241 -------------VTNTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYAN 276
                         +++  +N L           S +++F +L N+++++WN MI+ YA 
Sbjct: 182 GREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAK 241

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
                +A++L+ +M  +  +PN ++   +L AC +L  L  GR IHR V+    + +L +
Sbjct: 242 QGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVI 301

Query: 337 ENALVDMYAKC-GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
            N L++MY KC  SL EAR VF+++R +DV++W  +I AY   GQ  DA+ +F +M +  
Sbjct: 302 GNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLEN 361

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           + P+ I   +VLSAC+  G   +G+  +  I + + K    +E+   L+++  R G +++
Sbjct: 362 VAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLEN--SLMNMYNRCGSLDD 419

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHL 497
              +   +  + +   W +L+AA   + +   G+   +H + L
Sbjct: 420 TVGVFAAI-RDKSLVSWSTLIAAYAQHGHSRTGL---EHFWEL 458



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 176/379 (46%), Gaps = 73/379 (19%)

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MYGKCG + +A  V + +   + V+W  +VA +A+NG + EAL   R M    ++PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDG-A 59

Query: 234 MASLLPSVTNTSPE-----------------------------------NVLSVKEMFLK 258
           M  +   V ++S +                                   ++   ++ F +
Sbjct: 60  MFVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM---EVHGIEPNAISVASVLPACGDLSAL 315
           +  K LV+WN +IA Y+ N     A+ +Y  M      G++P+AI+ +S L AC  +  +
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDI 179

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             GR+I           +  ++NAL++MY+KCGSL  AR VFD+++ +DV++W +MIS Y
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ------ 429
              G    A+ LF +M  +   P+ + F+ +L+AC++   LE+GR   + + E       
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDL 299

Query: 430 ----------YKLVPRIEHFACLVDLLG---------------RAGKVEEAYDLIKQMPM 464
                      K    +E    + + L                + G+ ++A D+ KQM +
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQL 359

Query: 465 E---PNERIWGSLVAACCL 480
           E   PNE    ++++AC +
Sbjct: 360 ENVAPNEITLSNVLSACAV 378


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 207/655 (31%), Positives = 332/655 (50%), Gaps = 125/655 (19%)

Query: 11  FSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKL 70
           +S  +PV A ++++ +    G   N ++D Y   K+ K  +A+ + ++    +      L
Sbjct: 29  YSLARPVHAHMIASGFQP-RGHILNRLIDIYS--KSSKLNYARYLFDEIPQPDIVARTTL 85

Query: 71  MRTYGACGQMVDTRHVFDE--ITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
           +  Y A G +  +R +F +  +  ++ VF+N +I +Y +N+  + A+ ++ +M    F P
Sbjct: 86  IAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRP 145

Query: 129 DCYTYPCVLKACSGSNSLLVG------LQIHCSVVKVGLDYNLFNGNGLVAMYGKCG--- 179
           D YT+  VL A +     LV        Q+HC+VVK G  +     N L++ Y KC    
Sbjct: 146 DNYTFTSVLGALA-----LVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASP 200

Query: 180 ------CLKEARRVLNDMPSKDV-------------------------------VTWNSM 202
                  + EAR++ ++MP++D                                V WN+M
Sbjct: 201 SAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAM 260

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMAS--------------------LLPSVT 242
           ++GYA  G + EA ++ R+M   +I+ D  T  S                     L +V 
Sbjct: 261 ISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVA 320

Query: 243 NTSPENVLSV-----------------KEMFLKLDNKNLVSWNVMIAVYAN--------- 276
           N +P+  + V                 +E+F K+  ++LVSWN++++ Y N         
Sbjct: 321 NPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKS 380

Query: 277 --NSMPA--------------------EAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
             N MP                     EA+  + +M++ G EP   + A  + +C  L +
Sbjct: 381 FFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGS 440

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           L  GR++H  V R   + +L   NAL+ MYA+CG +  A  +F  M C D +SW +MI+A
Sbjct: 441 LKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAA 500

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
            G  GQG  A+ LF +ML  G+ PD I+F++V+SACSHAGL++EGR YF  M   Y + P
Sbjct: 501 LGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNP 560

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
             EH+A ++DLL RAGK  EA ++++ MP EP   IW +L+A C ++ N+D+GI AA+ +
Sbjct: 561 DEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERL 620

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           F L P   G YVLLSN+YA AG+W D+ +VRK M  +G+KK PG S +E+ ++V 
Sbjct: 621 FELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVH 675


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 189/543 (34%), Positives = 302/543 (55%), Gaps = 50/543 (9%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG------ACGQMVDTRHVFDEITNKNV 95
           P ++ +++LHAQ++  Q LH +P    KL+ +Y       AC + V +            
Sbjct: 115 PRLRHVQELHAQVL-RQGLHRDPRAASKLIASYALLRRVPAC-RCVFSAAAAPPFAPSTA 172

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
           +  N L+R+Y  N L + AL V+ +M +     D +TY  ++KA + +    V    H  
Sbjct: 173 LLANTLLRAYALNSLPHAALAVFVDMPLR--QRDTFTYSFLIKALATAGVTPV-RAAHTH 229

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           V K+G   + F GN L+  Y K   L +A++V ++M ++DVV+WN+ +A   + G  D A
Sbjct: 230 VFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAA 289

Query: 216 LDVCREMESLRIKPDADTMA---------------------SLLPSVTNTSPENVLS--- 251
             +  EM      P+ DT++                       +P     S   V+S   
Sbjct: 290 RSMFDEM------PEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYC 343

Query: 252 -------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
                   + +F K+  KNLV+W +M++  A   +  EA  L+ +M+   IE + ++V S
Sbjct: 344 KKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVS 403

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD-QMRCQ 363
           +L AC +   L LG++IHR+V ++KL  +  + NAL+DM+ KCG +  A  +FD ++  +
Sbjct: 404 ILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEK 463

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           D VSW  +I  + M G G  A+ LF++M   G  PD++  ++VLSAC+H GL+EEGR +F
Sbjct: 464 DSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFF 523

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
             M   Y + P IEH+ C+VDLLGR G ++EA D+IK MP EPNE IWGSL++AC L+ N
Sbjct: 524 ANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSACRLHKN 583

Query: 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VE 542
           ++   LAA+ + +L P+ +G Y +LSNIYA+AG+W D+ + R  M   G +K  G+S +E
Sbjct: 584 VEYAELAANELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIE 643

Query: 543 MND 545
           +++
Sbjct: 644 LDE 646


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 167/449 (37%), Positives = 271/449 (60%), Gaps = 35/449 (7%)

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
           +L+AC+    + +G  +H S VK  + +     N L+ MY KCG L  A  V + M  + 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT-NTSPENVLSV-- 252
           VVTW S++A YA+ G  DEA+ +  EM+   + PD  T+ ++L +   N S EN   V  
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHN 123

Query: 253 ------------------------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                                           +FL++  K+++SWN MI  Y+ NS+P E
Sbjct: 124 YIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNE 183

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A+ L+  M V  ++P+  ++A +LPAC  L++L  G+++H ++ R     + ++ NALVD
Sbjct: 184 ALSLFGDM-VLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVD 242

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MY KCG    AR +FD +  +D+++WT MI+ YGM G G +A+  F++M  +G+ PD ++
Sbjct: 243 MYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVS 302

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           F+S+L ACSH+GLL+EG  +F +M ++  + P++EH+AC+VDLL R+GK+  AY  IK M
Sbjct: 303 FISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSM 362

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
           P+EP+  IWG+L++ C ++ ++ +    A+H+F L P  +GYYVLL+N YA+A +W +VK
Sbjct: 363 PIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVK 422

Query: 523 RVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           ++R+ +  +G+KK PG S +E+  +V I 
Sbjct: 423 KLRQKIGRRGLKKNPGCSWIEVKSKVHIF 451



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 168/350 (48%), Gaps = 36/350 (10%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
           +H   +    L+  Y  CG +     VFD ++ + VV +  LI +Y    L  +A+ ++ 
Sbjct: 29  VHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFH 88

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M   G  PD +T   VL AC+ + SL  G  +H  + +  +  N+F  N L+ MY KCG
Sbjct: 89  EMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCG 148

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
            +++A  V  +MP KD+++WN+M+ GY++N   +EAL +  +M  L +KPD  T+A +LP
Sbjct: 149 SMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDM-VLEMKPDGTTLACILP 207

Query: 240 SVTN--------------------TSPENVLSVKEMFLK-------------LDNKNLVS 266
           +  +                    +  +   ++ +M++K             +  K+L++
Sbjct: 208 ACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLIT 267

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           W VMIA Y  +     A+  + +M   GIEP+ +S  S+L AC     L  G +    ++
Sbjct: 268 WTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQ 327

Query: 327 RK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
            +  ++P L     +VD+ A+ G L  A      M  + D   W +++S 
Sbjct: 328 DECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSG 377



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 155/340 (45%), Gaps = 23/340 (6%)

Query: 24  TQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT 83
           T  T+L   ACN  L+   D+          I    + SN  +   LM  Y  CG M D 
Sbjct: 101 TITTVLHACACNGSLENGKDVHNY-------IRENDMQSNIFVCNALMDMYAKCGSMEDA 153

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
             VF E+  K+++ +N +I  Y  N L  +AL ++ +M +    PD  T  C+L AC+  
Sbjct: 154 NSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPACASL 212

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
            SL  G ++H  +++ G   +    N LV MY KCG    AR + + +P+KD++TW  M+
Sbjct: 213 ASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMI 272

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKL--DN 261
           AGY  +G  + A+    EM    I+PD  +  S+L + +++    +L     F  +  D 
Sbjct: 273 AGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSG---LLDEGWRFFNVMQDE 329

Query: 262 KN----LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
            N    L  +  ++ + A +   A A      M    IEP+A    ++L  C     + L
Sbjct: 330 CNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMP---IEPDATIWGALLSGCRIHHDVKL 386

Query: 318 GRKIHRYVERKKLQP-NLRLENALVDMYAKCGSLTEARTV 356
             K+  +V   +L+P N      L + YA+     E + +
Sbjct: 387 AEKVAEHV--FELEPENTGYYVLLANTYAEAEKWEEVKKL 424



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 5/166 (3%)

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           + S+L AC +   + LGR +H    +  +       N L+DMYAKCG L  A  VFD M 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            + VV+WTS+I+AY   G   +A+ LF +M   G+ PD     +VL AC+  G LE G+ 
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 422 YFKIMTEQYKLVPRIEHFAC--LVDLLGRAGKVEEAYDLIKQMPME 465
               + E   +   I  F C  L+D+  + G +E+A  +  +MP++
Sbjct: 121 VHNYIREN-DMQSNI--FVCNALMDMYAKCGSMEDANSVFLEMPVK 163



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 27/260 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H  I+ N    S+  +   L+  Y  CG  V  R +FD I  K+++ + V+I  Y  
Sbjct: 219 KEVHGHILRNGFF-SDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGM 277

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG------LQIHCSVVKVGL 161
           +    +A+  +  M   G +PD  ++  +L ACS S  L  G      +Q  C+ VK  L
Sbjct: 278 HGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECN-VKPKL 336

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDVCR 220
           ++       +V +  + G L  A + +  MP   D   W ++++G   +     A  V  
Sbjct: 337 EHYAC----IVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAE 392

Query: 221 EMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL-----VSW-----NVM 270
            +    ++P+ +T   +L + T    E    VK++  K+  + L      SW      V 
Sbjct: 393 HV--FELEPE-NTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVH 449

Query: 271 IAVYANNSMP-AEAVDLYLQ 289
           I +  N+S P A+ +++ L+
Sbjct: 450 IFLAGNSSHPQAKKIEVLLK 469


>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 177/536 (33%), Positives = 294/536 (54%), Gaps = 80/536 (14%)

Query: 48  KKLHAQII---INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           K +H  ++      HLH    +G +L+  Y   G+M D RH+FD ++ ++ + +N ++ +
Sbjct: 62  KTIHGHVLEMGFQSHLH----VGNELIGMYAKLGRMRDARHLFDRMSVRSYISWNTMVSA 117

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTY------------------------------- 133
           Y  NY    AL +++ M   G +P+  T+                               
Sbjct: 118 YAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVS 177

Query: 134 ----PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
                 V+  C+   + +    IH   VK G +   F  + L+ +YGK G +  A  +  
Sbjct: 178 GEALAVVISICADLGAFVRAKIIHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFL 237

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL----RIKPDADTMASLLPSVTNTS 245
           +M +K + +WN+++  +A+ G  DEAL++  ++E      R++P                
Sbjct: 238 EMKNKSLASWNALITSHAEAGLCDEALEIFSQLERSGDCPRLRP---------------- 281

Query: 246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                            N+VSW+ +I  +A+     EA++L+ +M+   I  NA+++++V
Sbjct: 282 -----------------NVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTV 324

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L  C +L+AL LGR+IH +V R  +  N+ + N LV+MYAKCG L E   +F++   +D+
Sbjct: 325 LSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDL 384

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           +SW SMI+ YGM G G +A+  F +M+  G  PD + FV+VLS+CSH+GL+ EGR  F  
Sbjct: 385 ISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQ 444

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M ++Y++ P++EH+AC+VDLLGRAG + EA +++K MP+ PN  +WG+L+ +C +++N +
Sbjct: 445 MLKKYRIEPQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMHNNTE 504

Query: 486 IGILAADHIFHLAPNQ-SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           I    A H+F+L+  + +G Y+LLSNIYA +GRW D  RVR    +KG+KK PG S
Sbjct: 505 IAEETASHLFNLSHRETTGTYMLLSNIYAASGRWEDSARVRTSAKTKGLKKNPGQS 560



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 166/344 (48%), Gaps = 65/344 (18%)

Query: 119 KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC 178
           + M   G   D +T+P V++AC+   S ++G  IH  V+++G   +L  GN L+ MY K 
Sbjct: 31  RRMRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKL 90

Query: 179 GCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238
           G +++AR + + M  +  ++WN+MV+ YA N   + AL++ + MES  ++P         
Sbjct: 91  GRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEP--------- 141

Query: 239 PSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                                   NLV+W  +I+ YA +    EA++L+  M + G+E +
Sbjct: 142 ------------------------NLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVS 177

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
             ++A V+  C DL A +  + IH Y  +   +    +++AL+ +Y K G +  A  +F 
Sbjct: 178 GEALAVVISICADLGAFVRAKIIHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFL 237

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
           +M+ + + SW ++I+++  +G   +A+ +FS++  SG CP                    
Sbjct: 238 EMKNKSLASWNALITSHAEAGLCDEALEIFSQLERSGDCP-------------------- 277

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
                       +L P +  ++ ++D     G+ +EA +L ++M
Sbjct: 278 ------------RLRPNVVSWSAIIDGFASKGREKEALELFRRM 309


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 185/550 (33%), Positives = 295/550 (53%), Gaps = 38/550 (6%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMR--TYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           I   K+ HA +++  HL  NP    KL+        G +   R +F ++ N +    N +
Sbjct: 24  ISKTKQAHA-LLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTM 82

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           IR Y  +   Y+A+ +Y  M   G   D YTYP VL AC+   ++ +G + HC V+K G 
Sbjct: 83  IRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGF 142

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             +LF  N L+  Y  CG    A  V ++   +DVVTWN M+  +   G  ++A D+  E
Sbjct: 143 GSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDE 202

Query: 222 MESL-RIKPDADTMASLLPSVTNTSP---------------------------------E 247
           M  L  ++PD  TM SL+P+                                       +
Sbjct: 203 MTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCD 262

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
           ++ S +E+F ++  K+++SW  M++  A +    EA+ L+ +M+++ IE + I++  VL 
Sbjct: 263 DIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLS 322

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           AC    AL  G+ IH  +++ ++  +L LE ALVDMYAKCGS+  A  VF +MR ++V +
Sbjct: 323 ACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFT 382

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W ++I    M G G DA++LF +M    L PD + F+++L ACSHAGL++EG   F+ M 
Sbjct: 383 WNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMK 442

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
            ++++ PR+EH+ C+VDLL RA KV++A   I+ MP++ N  +W +L+ AC    + D+ 
Sbjct: 443 NKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLA 502

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
                 +  L P+  G YV+LSN+YA   +W    ++RK M +KGI+K PG S +E+N  
Sbjct: 503 EKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGM 562

Query: 547 VQIIALPLRS 556
           +       RS
Sbjct: 563 IHQFVAGDRS 572


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 190/556 (34%), Positives = 304/556 (54%), Gaps = 54/556 (9%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQ-----HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
           +L + P  KTL+++H Q  I+      HL S  SI LK   TY           +F  IT
Sbjct: 27  LLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQ-SISLKDF-TYSTL--------IFSHIT 76

Query: 92  -NKNVVFFNVLIRSYVNNYLYYD-ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG 149
            + N   FN+++R+    +  Y   LH+Y  M      P+ +T+P V  AC+    + + 
Sbjct: 77  PHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMA 136

Query: 150 LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQN 209
              HC V K+GLD +    N +V MY +CG    AR+V +++  KD+V+WNS+++GYA+ 
Sbjct: 137 RLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKL 196

Query: 210 GRFDEALDVC-REMESLRIKPDADTMASLLPSVTN------------------------- 243
           G   EA++V  R  E    +PD  ++ S+L +                            
Sbjct: 197 GFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYI 256

Query: 244 --------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
                   +    ++S + +F  + +++ ++WN  I+ YA N M  EA+ L+  M+ +G+
Sbjct: 257 GSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGV 316

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
           +PN +++ +VL AC  + AL LG+++  Y   + LQ ++ +  AL+DMYAKCGSL  A+ 
Sbjct: 317 DPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQR 376

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC--PDSIAFVSVLSACSHA 413
           VF+ M  ++  SW +MISA    G+  +A++LF +M   G    P+ I FVS+LSAC HA
Sbjct: 377 VFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHA 436

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           GL++EG   F +M+  + LVP+IEH++C+VDLL RAG + EA+D+I++MP +P+    G+
Sbjct: 437 GLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGA 496

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           L +AC    N+DIG      +  L P+ SG Y++ S IY     W D  R+R  M   G+
Sbjct: 497 LHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGV 556

Query: 534 KKMPGAS-VEMNDQVQ 548
            K PG S +E+ +Q++
Sbjct: 557 TKTPGCSWIEVGNQLR 572


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 194/617 (31%), Positives = 314/617 (50%), Gaps = 76/617 (12%)

Query: 4   VVLLCRHFSTTKPVQALV-LSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHS 62
           ++ +  + S+  P+   +  +T ++ +  +    IL++   +  LK++ AQ++    + +
Sbjct: 29  IISIFHNSSSLSPITKTINWNTTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIEN 88

Query: 63  NPSIGLKLMRTYGACG-----QMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHV 117
               G    R    C      ++     +   I   NV  +N  IR YV +        +
Sbjct: 89  ----GFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFML 144

Query: 118 YKNMSVHG-FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYG 176
           YK M + G   PD +TYP +LK C G  S  +GL +   V+K G + ++F  N  + M  
Sbjct: 145 YKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLL 204

Query: 177 KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS 236
            CG L  A  V N    +D+VTWNSM+ G  + G   EA+ + +EME+ +++P+  TM  
Sbjct: 205 SCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIG 264

Query: 237 LLPSVTNTSPEN---------------------------------VLSVKEMFLKLDNKN 263
           ++ S +     N                                 +L+ + +F  +  K 
Sbjct: 265 MISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKT 324

Query: 264 LVSWNVMIAVYA-------------------------------NNSMPAEAVDLYLQMEV 292
           LVSW  M+  YA                                     EA+ L+ +M++
Sbjct: 325 LVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQI 384

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
             IEP+ +++ + L AC  L AL +G  IH Y+ER KL  ++ L  ALVDMYAKCG++  
Sbjct: 385 RTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIAR 444

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           A  VF+++  ++ ++WT++I    + G   DA++ FSKM+  G+ PD I F+ VLSAC H
Sbjct: 445 ALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCH 504

Query: 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG 472
            GL+EEGR YF  M+ ++ + P+++H++C+VDLLGRAG +EEA +L+K MPM  +  + G
Sbjct: 505 GGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLG 564

Query: 473 SLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532
           +L  AC +Y N+ IG   A  +  + P  SG YVLL+++Y++A  W + +  RK MN KG
Sbjct: 565 ALFFACRVYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKG 624

Query: 533 IKKMPGAS-VEMNDQVQ 548
           ++K PG S VE+N  V 
Sbjct: 625 VEKTPGCSLVEINGIVH 641


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 186/550 (33%), Positives = 295/550 (53%), Gaps = 43/550 (7%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSN-PSIGLKLMRTYGACGQMVDTRHVFDEITNKNV 95
           +L+K   +  LK+LH  +I    +    P   L     Y   G +   + VF++I   ++
Sbjct: 11  LLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSL 70

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
             +N +I+ Y  +    +AL +Y+ M   G+ PD +T+P VLKACS  N   +G  +H  
Sbjct: 71  YIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNC 130

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           +VK G + +++    L+ MY  CG ++ A +V +D+P  +VV W S++AG   N    EA
Sbjct: 131 IVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEA 190

Query: 216 LDVCREMESLRIKPDADTMASLL-------------------------PSVTNTSPENVL 250
           + V ++ME   + P+  TM ++L                         P  +N++   +L
Sbjct: 191 VRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVIL 250

Query: 251 ---------------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
                          + +++F K+ ++NLV+WN MI  Y       EA+DL+  M + G 
Sbjct: 251 ATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGF 310

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
           +P+  +   V+ AC  L AL+ G+ +H YV +  L  +  +  ALVDMYAK G    A+ 
Sbjct: 311 DPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQ 370

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM-SGLCPDSIAFVSVLSACSHAG 414
           VF +++ +DV +WTS+I    M G G +A+  F KM   + L PD I ++ VLSACSH G
Sbjct: 371 VFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVG 430

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
            +E+G+ +F  M   + + P  +H+ C+VDLL RAG++ EA  L+++MP+EPN  IW +L
Sbjct: 431 KVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTAIWSAL 490

Query: 475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534
           +  C +Y N+D+       +  L  + SG YVLLSNIYA A RW +VK  R+ M  + I+
Sbjct: 491 LNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVKMARELMKERKIQ 550

Query: 535 KMPG-ASVEM 543
           K  G +SVEM
Sbjct: 551 KSLGHSSVEM 560


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 204/611 (33%), Positives = 322/611 (52%), Gaps = 86/611 (14%)

Query: 1   MKAVVLLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHL 60
            K V L+  H S+    Q L++    +LLS  +C D+      +   ++LH  II +   
Sbjct: 81  FKTVSLIRLHASSAS--QDLIVHPISSLLS--SCTDV----KSLAEGRQLHGHII-SLGF 131

Query: 61  HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF---FNVLIRSYVNNYLYYDALHV 117
             +P +  KL+  Y A   +VD  HV  E  N N++    +N+LI SYV N     AL  
Sbjct: 132 EQHPILVPKLVTFYSAFNLLVDA-HVITE--NSNILHPFPWNLLISSYVRNGFCQKALSA 188

Query: 118 YKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK 177
           YK M   G  PD +TYP VLKAC     L  G ++H S+    + ++L   N L++MYGK
Sbjct: 189 YKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGK 248

Query: 178 CGCLKEARRVLNDMPSKDVVTWNSMVA--------------------------------- 204
           CG +  AR + + +P +D V+WNSM++                                 
Sbjct: 249 CGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTI 308

Query: 205 --GYAQNGRFDEALDVC-------------------------------REMESLRIKP-- 229
             GY + G +  AL++                                +E+ S  I+   
Sbjct: 309 AGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCF 368

Query: 230 -DADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
            + DT+ + L ++ +   +++     +F  ++ K+L++WN +I+   +     EA  L  
Sbjct: 369 GEVDTVKNALITMYSRC-KDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLR 427

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK-LQPNLRLENALVDMYAKC 347
           +M + GIEPN +++ASVLP C  ++ L  G++ H Y+ R++  + +L L NALVDMYA+ 
Sbjct: 428 EMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARS 487

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           G + EAR VFD +  +D +++TSMI+ YGM G+G  A+ LF +M    + PD I  ++VL
Sbjct: 488 GKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVL 547

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
           SACSH+GL+ +G+  F+ M   Y L P +EHFAC+ DL GRAG + +A ++I+ MP +P 
Sbjct: 548 SACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPT 607

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527
             +W +L+ AC ++ N +IG  AA+ +  + P   GYYVL++N+YA AG W  + +VR F
Sbjct: 608 PAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRIF 667

Query: 528 MNSKGIKKMPG 538
           M   G++K PG
Sbjct: 668 MRDLGVRKAPG 678



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 120/522 (22%), Positives = 208/522 (39%), Gaps = 92/522 (17%)

Query: 58  QHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHV 117
           QH+H + S           C  +   +  F  +    +      ++ + +     DA   
Sbjct: 35  QHVHPSAS-----------CNALESAQETFTSVDASMIDSLLTSLKEFTSRGNLLDAFKT 83

Query: 118 YKNMSVHGFDP--DCYTYP--CVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
              + +H      D   +P   +L +C+   SL  G Q+H  ++ +G + +      LV 
Sbjct: 84  VSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVT 143

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
            Y     L +A  +  +        WN +++ Y +NG   +AL   ++M    I+PD  T
Sbjct: 144 FYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFT 203

Query: 234 MASLL----------------PSVTNTSPENVLSV-----------------KEMFLKLD 260
             S+L                 S+  +  +  L V                 +++F K+ 
Sbjct: 204 YPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIP 263

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI-------------------- 300
            ++ VSWN MI+VYA+  M  EA +L+  M    IE N I                    
Sbjct: 264 ERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALE 323

Query: 301 -------------SVASV--LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
                        SVA +  L AC  +    LG++IH +  R        ++NAL+ MY+
Sbjct: 324 LLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYS 383

Query: 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
           +C  L  A  +F  M  + +++W S+IS      +  +A  L  +ML+ G+ P+ +   S
Sbjct: 384 RCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIAS 443

Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA---YDLIKQ- 461
           VL  C+    L+ G+ +   MT +      +  +  LVD+  R+GKV EA   +D++ + 
Sbjct: 444 VLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGER 503

Query: 462 -----MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
                  M     + G   AA  L+  M+   +  DHI  +A
Sbjct: 504 DKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIA 545


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 174/497 (35%), Positives = 280/497 (56%), Gaps = 40/497 (8%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +NV +R      L+ +++ +Y++M   G  PD +++P +LK+C+  +  + G Q+HC V 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP--SKDVVTWNSMVAGYAQNGRFDEA 215
           K G +   F    L++MY KCG + +AR+V  + P  S+  V +N++++GY  N +  +A
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPE---------------------------- 247
             + R M+   +  D+ TM  L+P    T PE                            
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVP--LCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFI 198

Query: 248 -------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                  +V + + +F ++  K L++WN +I+ Y+ N +  + ++LY QM+  G+ P+  
Sbjct: 199 TMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPF 258

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           ++ SVL +C  L A  +G ++ + VE     PN+ + NA + MYA+CG+L +AR VFD M
Sbjct: 259 TLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIM 318

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             + +VSWT+MI  YGM G G   + LF  M+  G+ PD   FV VLSACSH+GL ++G 
Sbjct: 319 PVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGL 378

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
             F+ M  +YKL P  EH++CLVDLLGRAG+++EA + I+ MP+EP+  +WG+L+ AC +
Sbjct: 379 ELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKI 438

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           + N+D+  LA   +    PN  GYYVL+SNIY+ +     + R+R  M  +  +K PG S
Sbjct: 439 HKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYS 498

Query: 541 -VEMNDQVQIIALPLRS 556
            VE   +V +     RS
Sbjct: 499 YVEHKGRVHLFLAGDRS 515



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/419 (26%), Positives = 191/419 (45%), Gaps = 40/419 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDE--ITNKNVVFFNVLIRSY 105
           ++LH  +       + P +   L+  Y  CG + D R VF+E   +++  V +N LI  Y
Sbjct: 73  QQLHCHVT-KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGY 131

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
             N    DA ++++ M   G   D  T   ++  C+    L +G  +H   VK GLD  +
Sbjct: 132 TANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEV 191

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
              N  + MY KCG ++  RR+ ++MP K ++TWN++++GY+QNG   + L++  +M+S 
Sbjct: 192 AVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSS 251

Query: 226 RIKPDADTMASLLPS---------------------------VTNTSPE------NVLSV 252
            + PD  T+ S+L S                           V+N S        N+   
Sbjct: 252 GVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKA 311

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           + +F  +  K+LVSW  MI  Y  + M    + L+  M   GI P+      VL AC   
Sbjct: 312 RAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHS 371

Query: 313 SALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTS 370
                G ++ R ++R+ KL+P     + LVD+  + G L EA    + M  + D   W +
Sbjct: 372 GLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGA 431

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           ++ A  +      A   F+K++     P++I +  ++S        +EG +  ++M  +
Sbjct: 432 LLGACKIHKNVDMAELAFAKVIE--FEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRE 488


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 173/497 (34%), Positives = 282/497 (56%), Gaps = 36/497 (7%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +NV +R      L+ +++ +Y++M   G  PD +++P +LK+C+  +  + G Q+HC V+
Sbjct: 18  WNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVI 77

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP--SKDVVTWNSMVAGYAQNGRFDEA 215
           + G +   F    L++MY KCG +++AR+V  + P  S+  V +N++++GY  N +  +A
Sbjct: 78  RGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDA 137

Query: 216 LDVCREMESLRIKPDADTMASLLPSVT------------------NTSPE---------- 247
             + R M+   +  D+ T+  L+P  T                   T  E          
Sbjct: 138 AFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITM 197

Query: 248 -----NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
                +V S + +F ++  K L++WN +I+ Y+ N +  + ++L+ QM+  G+ P+  ++
Sbjct: 198 YMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTL 257

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            SVL +C  L A  +G+++   VE     PN+ L NAL+ MYA+CG+L +AR VFD M  
Sbjct: 258 VSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPV 317

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           + +VSWT+MI  YGM G G   + LF  M+  G+ PD   FV VLSACSH+GL ++G   
Sbjct: 318 KSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLEL 377

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           F+ M  +YKL P  EH++CLVDLLGRAG+++EA + I  MP+EP+  +WG+L+ AC ++ 
Sbjct: 378 FRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHK 437

Query: 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-V 541
           N+D+  LA   +    P   GYYVL+SNIY+ +     + R+R  M  +  +K PG S V
Sbjct: 438 NVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYV 497

Query: 542 EMNDQVQIIALPLRSSK 558
           E   +V +     RS +
Sbjct: 498 EHKGKVHLFLAGDRSHE 514



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 185/419 (44%), Gaps = 40/419 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNV--VFFNVLIRSY 105
           ++LH  +I      + P +   L+  Y  CG + D R VF+E  + +   V +N LI  Y
Sbjct: 70  QQLHCHVI-RGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGY 128

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
             N    DA  +++ M   G   D  T   ++  C+    L +G  +H   VK G    +
Sbjct: 129 TANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEV 188

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
              N  + MY KCG ++  RR+ ++MP K ++TWN++++GY+QNG   + L++  +M+S 
Sbjct: 189 AVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSS 248

Query: 226 RIKPDADTMASLLPSVTNTSPE---------------------------------NVLSV 252
            + PD  T+ S+L S  +   +                                 N+   
Sbjct: 249 GVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKA 308

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           + +F  +  K+LVSW  MI  Y  + M    + L+  M   GI P+      VL AC   
Sbjct: 309 RAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHS 368

Query: 313 SALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTS 370
                G ++ R ++R+ KL+P     + LVD+  + G L EA    D M  + D   W +
Sbjct: 369 GLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGA 428

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           ++ A  +      A   F+K++     P +I +  ++S        +EG +  ++M  +
Sbjct: 429 LLGACKIHKNVDMAELAFAKVIE--FEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRE 485



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 7/205 (3%)

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
            SWNV +   A  S+  E++ LY  M   G  P+A S   +L +C  LS  + G+++H +
Sbjct: 16  TSWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCH 75

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ--MRCQDVVSWTSMISAYGMSGQGY 382
           V R   +    +  AL+ MY KCG + +AR VF++     Q  V + ++IS Y  + +  
Sbjct: 76  VIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVS 135

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK--IMTEQYKLVPRIEHFA 440
           DA  +F +M  +G+  DS+  + ++  C+    L  GR      +    Y  V  +  F 
Sbjct: 136 DAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSF- 194

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPME 465
             + +  + G VE    L  +MP++
Sbjct: 195 --ITMYMKCGSVESGRRLFDEMPVK 217


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 178/518 (34%), Positives = 289/518 (55%), Gaps = 35/518 (6%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  LM  Y  C Q VD   +FDE   ++V  +N +I  Y  +     AL  +  M   G
Sbjct: 143 VGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELG 202

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           F+P+  T+  V+ +C+   +L  G ++H  +++  +  + F  + LV MYGKCGCL+ A+
Sbjct: 203 FEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAK 262

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            V   +P K+ +TWN+M+ GY+  G     +++   M     KP   T+ S++ + + + 
Sbjct: 263 EVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSV 322

Query: 246 PEN---------------------------------VLSVKEMFLKLDNKNLVSWNVMIA 272
                                               V S + +F  +    +VSWNVMI+
Sbjct: 323 QLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMIS 382

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            +       +A+ +Y  M+ H ++P+A++ +S L AC  L+AL  GR++H  +   KL+ 
Sbjct: 383 GHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHKLEA 442

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           N  +  AL+DMYAKCG + EAR +F Q+  +D+VSWTSMI AYG  GQ  +A+ LF +M 
Sbjct: 443 NEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQ 502

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
              +  DS+ F++VLSACSHAGL++EG  YF  M  QY + P IEH++CL+DLLGRAG++
Sbjct: 503 KLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDLLGRAGRL 562

Query: 453 EEAYDLIKQMPMEPNE-RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
            EAY+++++     ++  +  +L +AC L++N  +GI     +  + P+    Y+LLSN+
Sbjct: 563 HEAYEILQRSKETRSDIGLLSTLFSACLLHNNFVLGIQIGKMLIEVDPDDPSTYILLSNM 622

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           YA   +W +V++VR+ M   G+KK PG S +E+N ++ 
Sbjct: 623 YASVNKWDEVRKVRRKMKELGLKKSPGCSWIEINQRIH 660



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/467 (28%), Positives = 235/467 (50%), Gaps = 43/467 (9%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK---NVVFFNVLIRSY 105
           KL  Q I +    SN  +   L+  Y +C        VF   TN    +V  +N L+ +Y
Sbjct: 23  KLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQ--TNDCPLDVSLWNALLSAY 80

Query: 106 VNNYLYYDALHVYKNMSVHGF-DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
            NN+ + +AL ++  ++ + +  PD YTYP VLKAC G   ++ G +IH  ++K GL ++
Sbjct: 81  TNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHLLKTGLIWD 140

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
           +F G+ L+ MY KC    +A ++ ++ P +DV  WN++++ Y ++G+ + AL    +M+ 
Sbjct: 141 VFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKE 200

Query: 225 LRIKPDADTMASLLPSVTN-------------------TSPENVLS-------------- 251
           L  +P++ T   ++ S T                         VLS              
Sbjct: 201 LGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEM 260

Query: 252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
            KE+F K+  KN ++WN MI  Y+        ++L ++M   G +P  +++ S++ A   
Sbjct: 261 AKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSR 320

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
              L  G+ IH Y+ R ++  ++ ++ +L+D Y KCG ++ A T+F  +   +VVSW  M
Sbjct: 321 SVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVM 380

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQY 430
           IS + M G    A+ ++  M    + PD++ F S LSACS    L++GR  ++ I+   +
Sbjct: 381 ISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCII--NH 438

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           KL         L+D+  + G V+EA  L  Q+P + +   W S++ A
Sbjct: 439 KLEANEIVMGALLDMYAKCGDVDEARKLFHQLP-KRDLVSWTSMIFA 484



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 156/318 (49%), Gaps = 9/318 (2%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +H  I+ N+ +  +  I + L+  Y  CG +     +F  I+   VV +NV+I  +V 
Sbjct: 328 KFIHGYILRNR-IDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVM 386

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
              +  ALH+Y NM  H   PD  T+   L ACS   +L  G ++H  ++   L+ N   
Sbjct: 387 VGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHKLEANEIV 446

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L+ MY KCG + EAR++ + +P +D+V+W SM+  Y  +G+  EAL +  EM+ L +
Sbjct: 447 MGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQKLNV 506

Query: 228 KPDADTMASLLPSVTNTS--PENVLSVKEMFLKLDNK-NLVSWNVMIAVYANNSMPAEAV 284
           + D+ T  ++L + ++     E  +   EM ++ D K  +  ++ +I +        EA 
Sbjct: 507 RADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDLLGRAGRLHEAY 566

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR-YVERKKLQPNLRLENALVDM 343
           ++  + +    +   +S  ++  AC   +  +LG +I +  +E     P+  +   L +M
Sbjct: 567 EILQRSKETRSDIGLLS--TLFSACLLHNNFVLGIQIGKMLIEVDPDDPSTYI--LLSNM 622

Query: 344 YAKCGSLTEARTVFDQMR 361
           YA      E R V  +M+
Sbjct: 623 YASVNKWDEVRKVRRKMK 640


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 172/508 (33%), Positives = 292/508 (57%), Gaps = 43/508 (8%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR--HVFDEITNKNV 95
           LD   ++  +K++HA+I++N  L  +  +  KL+RT       VD     +F+++   N 
Sbjct: 53  LDGCKNLTQIKQVHARILLNG-LDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNP 111

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
             +N LIR Y+      ++   Y  M   G  P  +T+  + KAC     + +G QIH  
Sbjct: 112 FLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQ 171

Query: 156 VVKVG-LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            + VG    +L  GN ++ MY KCG L+  R+V ++MP++DV++W  +++ Y ++G    
Sbjct: 172 TILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSG---- 227

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
                                            N+ S  E+F  L  K++V+W VM++ +
Sbjct: 228 ---------------------------------NMESAGELFDGLPVKDMVAWTVMVSGF 254

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL--QP 332
           A N+ P EA+  + +M+  G+E + I++  V+ AC  L A      I    E+ +   + 
Sbjct: 255 AQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKH 314

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           ++ + +AL+DMY+KCGS+ +A  VF  M+ ++V S++SMI  + M G+ +DA+ LF +M+
Sbjct: 315 SVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMV 374

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
            + + P+ + F+ VL+ACSHAG++E+G   F++M + Y + P  +H+ C+VDLLGRAG++
Sbjct: 375 KTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRL 434

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
           +EA++L+K MP+EP+  +WG+L+ AC ++ + DI  +AA+H+F L P   G Y+LL+NIY
Sbjct: 435 QEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIY 494

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           A  GRW DV  VRK M ++G++K P  S
Sbjct: 495 ASCGRWNDVSTVRKLMRTRGLRKNPAFS 522


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 176/541 (32%), Positives = 298/541 (55%), Gaps = 36/541 (6%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           LHA  I++  + SN  +G  ++  Y    +    R VFD +  ++ V +N +I  +  N 
Sbjct: 135 LHAHSIVDG-VASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNS 193

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
            + D++ V+ +M   G   D  T   VL A +      +G+ I C   K GL  +++   
Sbjct: 194 YFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLT 253

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
           GL+++Y KCG   + R + + +   D++++N+M++GY  N   + A+ + RE+ +   + 
Sbjct: 254 GLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRV 313

Query: 230 DADTMASLLPS------------VTNTSPE---------------------NVLSVKEMF 256
           ++ T+  L+P             + N S +                      V   +++F
Sbjct: 314 NSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLF 373

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
            +   K+L SWN MI+ Y  N +   A+ L+ +M +  + PN ++V S+L AC  L AL 
Sbjct: 374 DESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALS 432

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
           +G+ +H  ++ ++L+ N+ +  ALVDMYAKCGS+ EAR +FD M  ++VV+W +MI+ YG
Sbjct: 433 IGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYG 492

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
           + G G +A+ LF +ML SG+ P  + F+S+L ACSH+GL+ EG   F  M   Y   P  
Sbjct: 493 LHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMS 552

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           EH+AC+VD+LGRAG++  A + I++MP+EP   +WG+L+ AC ++ N ++  +A+  +F 
Sbjct: 553 EHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQ 612

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLR 555
           L P   GYYVLLSNIY+    +     VR+ +  + + K PG + +E++DQ  +     R
Sbjct: 613 LDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDR 672

Query: 556 S 556
           S
Sbjct: 673 S 673



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/483 (25%), Positives = 235/483 (48%), Gaps = 42/483 (8%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +L+    +  L ++ AQ+I++  +H + S   KL   +   G +   R +F++++  ++ 
Sbjct: 20  LLNNATTLSQLLQIQAQLILHG-IHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLF 78

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
            FNVLIR + +N L   ++ +Y ++       PD +TY   + A S      VG+ +H  
Sbjct: 79  LFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAH 138

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
            +  G+  NLF G+ +V +Y K    + AR+V + MP +D V WN+M++G+++N  F+++
Sbjct: 139 SIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDS 198

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENV------LSVKE--------------- 254
           + V  +M  + +  D+ T+A++L +V       +      L+ K+               
Sbjct: 199 IRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISL 258

Query: 255 ------------MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
                       +F ++D  +L+S+N MI+ Y  N     AV L+ ++   G   N+ ++
Sbjct: 259 YSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTL 318

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKK--LQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
             ++P     + L L R I     +    LQP+  +  AL  +Y +   +  AR +FD+ 
Sbjct: 319 VGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPS--VSTALTTVYCRLNEVQFARQLFDES 376

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             + + SW +MIS Y  +G    A++LF +M M  L P+ +   S+LSAC+  G L  G+
Sbjct: 377 PEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALSIGK 435

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
           +   ++  + +L   +     LVD+  + G + EA  L   M ++ N   W +++    L
Sbjct: 436 WVHGLIKSE-RLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGL 493

Query: 481 YSN 483
           + +
Sbjct: 494 HGH 496


>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 611

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 198/608 (32%), Positives = 301/608 (49%), Gaps = 113/608 (18%)

Query: 47  LKKLHAQIIINQHLH-----SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           LK LHA   I+Q +       +P +  KL++ Y  C  +   + +FD++   NV  +  +
Sbjct: 8   LKSLHAGKQIHQQITVSGWGKDPFMLTKLIQMYADCDHLFSAQRLFDKMPQPNVYAWTAI 67

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
              Y+ + +Y   +  Y  M      PD Y +P VL+AC+       G+ IH  V+  G 
Sbjct: 68  FGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGC 127

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG----------- 210
           + NL   N L+ MY KCG  + AR V  +M  +D+ +WNSM++GY  NG           
Sbjct: 128 ESNLQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNC 187

Query: 211 ------------------------RFDEALDVCREME----------------------S 224
                                   RFDEA +V +++E                      S
Sbjct: 188 MRLDGFEPDVVTWNTLMDAYCQMGRFDEAWEVLKQIEQPNIISWTTLISSYSKIGEHDMS 247

Query: 225 LRI----------KPDADTMASLLPSV--------------------TNT---------- 244
           LR+           PD D + S+L S                     TNT          
Sbjct: 248 LRVFQDMIIREVVSPDLDCLCSVLVSCRHIGALRSGKEIHGYGTKMETNTVFYSSAGAAL 307

Query: 245 -----SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                    +     +F  +D  ++V+WN MI  +    +  +A++ + +M+   I+ + 
Sbjct: 308 LTMYAKCGRIQDAINVFELMDKSDIVTWNAMILGFVELDLGKQAIECFREMQRMDIKNDQ 367

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFD 358
            +++++LP C     L  G  IH YV +   L   + + NA++ MY KCG +  A T+F 
Sbjct: 368 TTISTILPVCD----LQYGNPIHAYVRKSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFC 423

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
            M  +DVVSW +MI  +GM G G  A+ L  +M++SG+ P+S  F SVLSACSH+GL++E
Sbjct: 424 SMPNKDVVSWNTMIGGFGMHGHGQAALKLLKEMILSGIFPNSTTFTSVLSACSHSGLVDE 483

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           G   F+ MTE Y + PR+EH++C+VD+L RAG+  +A   I +MP+EP++ IWG+L+AAC
Sbjct: 484 GFRLFRSMTEDYSITPRMEHYSCIVDMLARAGQFADAVTFIHKMPLEPDKSIWGALLAAC 543

Query: 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
             Y N+D G LAA+ +  + P  +G+YV LSNIYA+AGRW D  RVRK +  KG+ K  G
Sbjct: 544 RAYQNLDFGRLAAEQLIRMEPKCAGHYVTLSNIYARAGRWDDAGRVRKEIEGKGLVKPSG 603

Query: 539 AS-VEMND 545
            S +E  D
Sbjct: 604 QSLIETRD 611



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 159/387 (41%), Gaps = 74/387 (19%)

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
           +L+ CS   SL  G QIH  +   G   + F    L+ MY  C  L  A+R+ + MP  +
Sbjct: 1   MLQLCSNLKSLHAGKQIHQQITVSGWGKDPFMLTKLIQMYADCDHLFSAQRLFDKMPQPN 60

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN------------ 243
           V  W ++   Y ++G +D+ +     M+   + PD      +L + T             
Sbjct: 61  VYAWTAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIHK 120

Query: 244 ---------------------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                                    N  S + +F +++ ++L SWN MI+ Y +N +   
Sbjct: 121 DVIVCGCESNLQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSWNSMISGYVSNGLADL 180

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           AV+L   M + G EP+ ++                                    N L+D
Sbjct: 181 AVELLNCMRLDGFEPDVVTW-----------------------------------NTLMD 205

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC-PDSI 401
            Y + G   EA  V  Q+   +++SWT++IS+Y   G+   ++ +F  M++  +  PD  
Sbjct: 206 AYCQMGRFDEAWEVLKQIEQPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSPDLD 265

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTE-QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
              SVL +C H G L  G+      T+ +   V      A L+ +  + G++++A ++ +
Sbjct: 266 CLCSVLVSCRHIGALRSGKEIHGYGTKMETNTVFYSSAGAALLTMYAKCGRIQDAINVFE 325

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIG 487
            M  + +   W +++     +  +D+G
Sbjct: 326 LMD-KSDIVTWNAMILG---FVELDLG 348



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 43/232 (18%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++    +HA +  +  L S  ++   ++  Y  CG +     +F  + NK+VV +N +I
Sbjct: 378 DLQYGNPIHAYVRKSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSMPNKDVVSWNTMI 437

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             +  +     AL + K M + G  P+  T+  VL ACS S  +  G ++  S+ +   D
Sbjct: 438 GGFGMHGHGQAALKLLKEMILSGIFPNSTTFTSVLSACSHSGLVDEGFRLFRSMTE---D 494

Query: 163 YNLF----NGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAG------------ 205
           Y++     + + +V M  + G   +A   ++ MP   D   W +++A             
Sbjct: 495 YSITPRMEHYSCIVDMLARAGQFADAVTFIHKMPLEPDKSIWGALLAACRAYQNLDFGRL 554

Query: 206 ----------------------YAQNGRFDEALDVCREMESLR-IKPDADTM 234
                                 YA+ GR+D+A  V +E+E    +KP   ++
Sbjct: 555 AAEQLIRMEPKCAGHYVTLSNIYARAGRWDDAGRVRKEIEGKGLVKPSGQSL 606


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 176/541 (32%), Positives = 298/541 (55%), Gaps = 36/541 (6%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           LHA  I++  + SN  +G  ++  Y    +    R VFD +  ++ V +N +I  +  N 
Sbjct: 135 LHAHSIVDG-VASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNS 193

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
            + D++ V+ +M   G   D  T   VL A +      +G+ I C   K GL  +++   
Sbjct: 194 YFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLT 253

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
           GL+++Y KCG   + R + + +   D++++N+M++GY  N   + A+ + RE+ +   + 
Sbjct: 254 GLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRV 313

Query: 230 DADTMASLLPS------------VTNTSPE---------------------NVLSVKEMF 256
           ++ T+  L+P             + N S +                      V   +++F
Sbjct: 314 NSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLF 373

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
            +   K+L SWN MI+ Y  N +   A+ L+ +M +  + PN ++V S+L AC  L AL 
Sbjct: 374 DESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALS 432

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
           +G+ +H  ++ ++L+ N+ +  ALVDMYAKCGS+ EAR +FD M  ++VV+W +MI+ YG
Sbjct: 433 IGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYG 492

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
           + G G +A+ LF +ML SG+ P  + F+S+L ACSH+GL+ EG   F  M   Y   P  
Sbjct: 493 LHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMS 552

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           EH+AC+VD+LGRAG++  A + I++MP+EP   +WG+L+ AC ++ N ++  +A+  +F 
Sbjct: 553 EHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQ 612

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLR 555
           L P   GYYVLLSNIY+    +     VR+ +  + + K PG + +E++DQ  +     R
Sbjct: 613 LDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDR 672

Query: 556 S 556
           S
Sbjct: 673 S 673



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/483 (25%), Positives = 235/483 (48%), Gaps = 42/483 (8%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +L+    +  L ++ AQ+I++  +H + S   KL   +   G +   R +F++++  ++ 
Sbjct: 20  LLNNATTLSQLLQIQAQLILHG-IHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLF 78

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
            FNVLIR + +N L   ++ +Y ++       PD +TY   + A S      VG+ +H  
Sbjct: 79  LFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAH 138

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
            +  G+  NLF G+ +V +Y K    + AR+V + MP +D V WN+M++G+++N  F+++
Sbjct: 139 SIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDS 198

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENV------LSVKE--------------- 254
           + V  +M  + +  D+ T+A++L +V       +      L+ K+               
Sbjct: 199 IRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISL 258

Query: 255 ------------MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
                       +F ++D  +L+S+N MI+ Y  N     AV L+ ++   G   N+ ++
Sbjct: 259 YSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTL 318

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKK--LQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
             ++P     + L L R I     +    LQP+  +  AL  +Y +   +  AR +FD+ 
Sbjct: 319 VGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPS--VSTALTTVYCRLNEVQFARQLFDES 376

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             + + SW +MIS Y  +G    A++LF +M M  L P+ +   S+LSAC+  G L  G+
Sbjct: 377 PEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALSIGK 435

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
           +   ++  + +L   +     LVD+  + G + EA  L   M ++ N   W +++    L
Sbjct: 436 WVHGLIKSE-RLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGL 493

Query: 481 YSN 483
           + +
Sbjct: 494 HGH 496


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 183/541 (33%), Positives = 294/541 (54%), Gaps = 37/541 (6%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           PD+   +++H  +I      S+  +   L+  Y  CG +   R VFD +  ++ + +N +
Sbjct: 209 PDLARGREVHLHVI-RYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAM 267

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           I  Y  N +  + L ++  M     DPD  T   V+ AC       +G ++H  V+K G 
Sbjct: 268 ISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGF 327

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
              +   N L+ M+   GC  EA  V + M  KD+V+W +M++GY +NG  ++A++    
Sbjct: 328 VAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTI 387

Query: 222 MESLRIKPDADTMASLLPS---------------------------VTNTSPENVLSVK- 253
           ME   + PD  T+AS+L +                           V N+  +     + 
Sbjct: 388 MEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRC 447

Query: 254 -----EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
                E+F ++ NKN++SW  +I     N    EA+  + QM +  ++PN++++ SVL A
Sbjct: 448 IDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM-ILSLKPNSVTLVSVLSA 506

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  + AL  G++IH +  R  L  +  L NAL+DMY +CG +  A   F+    +DV SW
Sbjct: 507 CARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASW 565

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
             +++ Y   G+G  AV LF KM+ S + PD I F S+L ACS +G++ +G  YF+ M  
Sbjct: 566 NILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEH 625

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
           ++ + P ++H+A +VDLLGRAG++E+AY+ IK+MP++P+  IWG+L+ AC +Y N+++G 
Sbjct: 626 KFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGE 685

Query: 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           LAA HIF +     GYY+LL N+YA +G+W +V RVRK M    +   PG S VE+  QV
Sbjct: 686 LAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQV 745

Query: 548 Q 548
            
Sbjct: 746 H 746



 Score =  238 bits (606), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 157/540 (29%), Positives = 265/540 (49%), Gaps = 78/540 (14%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  +   G +V+  +VF ++  +++  +NVL+  Y     + +AL++Y  M   G
Sbjct: 131 LGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVG 190

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             PD YT+PCVL+ C G   L  G ++H  V++ G + ++   N L+ MY KCG +  AR
Sbjct: 191 IRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSAR 250

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS----- 240
            V + MP +D ++WN+M++GY +N    E L +   M    + PD  TM S++ +     
Sbjct: 251 LVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALG 310

Query: 241 -----------------VTNTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIA 272
                            V   S  N L             + +F K++ K+LVSW  MI+
Sbjct: 311 DERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMIS 370

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y  N +P +AV+ Y  ME  G+ P+ I++ASVL AC  L  L  G  +H + +R  L  
Sbjct: 371 GYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTS 430

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
            + + N+L+DMY+KC  + +A  VF ++  ++V+SWTS+I    ++ + ++A+  F +M+
Sbjct: 431 YVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI 490

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGR---------------YYFKIMTEQY----KLV 433
           +S L P+S+  VSVLSAC+  G L  G+               +    + + Y    ++ 
Sbjct: 491 LS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRME 549

Query: 434 PRIEHF-ACLVDLL------------GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
           P    F +C  D+             G+ G   E +  + +  + P+E  + SL+ AC  
Sbjct: 550 PAWNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSR 609

Query: 481 YSNMDIGI---LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
              +  G+    + +H FH+APN   +Y  + ++  +AGR  D            IKKMP
Sbjct: 610 SGMVTDGLEYFESMEHKFHIAPNLK-HYASVVDLLGRAGRLEDAYEF--------IKKMP 660



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 196/416 (47%), Gaps = 44/416 (10%)

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
           TY  +L+ C    +   G ++H  V K      +  GN L++M+ + G L EA  V   M
Sbjct: 96  TYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKM 155

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS----------- 240
             +D+ +WN +V GYA+ G FDEAL++   M  + I+PD  T   +L +           
Sbjct: 156 AERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGR 215

Query: 241 ----------------VTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNS 278
                           V N          ++ S + +F ++  ++ +SWN MI+ Y  N 
Sbjct: 216 EVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEND 275

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
           +  E + L+  M    ++P+ +++ SV+ AC  L    LGR++H YV +      + + N
Sbjct: 276 VCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNN 335

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           +L+ M++  G   EA  VF +M  +D+VSWT+MIS Y  +G    AV  ++ M   G+ P
Sbjct: 336 SLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVP 395

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA----CLVDLLGRAGKVEE 454
           D I   SVLSAC+  GLL++G     IM  ++     +  +      L+D+  +   +++
Sbjct: 396 DEITIASVLSACAGLGLLDKG-----IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDK 450

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCL-YSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           A ++  ++P   N   W S++    L Y + +        I  L PN      +LS
Sbjct: 451 ALEVFHRIP-NKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLS 505


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 183/541 (33%), Positives = 294/541 (54%), Gaps = 37/541 (6%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           PD+   +++H  +I      S+  +   L+  Y  CG +   R VFD +  ++ + +N +
Sbjct: 209 PDLARGREVHLHVI-RYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAM 267

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           I  Y  N +  + L ++  M     DPD  T   V+ AC       +G ++H  V+K G 
Sbjct: 268 ISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGF 327

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
              +   N L+ M+   GC  EA  V + M  KD+V+W +M++GY +NG  ++A++    
Sbjct: 328 VAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTI 387

Query: 222 MESLRIKPDADTMASLLPS---------------------------VTNTSPENVLSVK- 253
           ME   + PD  T+AS+L +                           V N+  +     + 
Sbjct: 388 MEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRC 447

Query: 254 -----EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
                E+F ++ NKN++SW  +I     N    EA+  + QM +  ++PN++++ SVL A
Sbjct: 448 IDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM-ILSLKPNSVTLVSVLSA 506

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  + AL  G++IH +  R  L  +  L NAL+DMY +CG +  A   F+    +DV SW
Sbjct: 507 CARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASW 565

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
             +++ Y   G+G  AV LF KM+ S + PD I F S+L ACS +G++ +G  YF+ M  
Sbjct: 566 NILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEH 625

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
           ++ + P ++H+A +VDLLGRAG++E+AY+ IK+MP++P+  IWG+L+ AC +Y N+++G 
Sbjct: 626 KFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGE 685

Query: 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           LAA HIF +     GYY+LL N+YA +G+W +V RVRK M    +   PG S VE+  QV
Sbjct: 686 LAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQV 745

Query: 548 Q 548
            
Sbjct: 746 H 746



 Score =  238 bits (606), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 157/540 (29%), Positives = 265/540 (49%), Gaps = 78/540 (14%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  +   G +V+  +VF ++  +++  +NVL+  Y     + +AL++Y  M   G
Sbjct: 131 LGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVG 190

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             PD YT+PCVL+ C G   L  G ++H  V++ G + ++   N L+ MY KCG +  AR
Sbjct: 191 IRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSAR 250

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS----- 240
            V + MP +D ++WN+M++GY +N    E L +   M    + PD  TM S++ +     
Sbjct: 251 LVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALG 310

Query: 241 -----------------VTNTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIA 272
                            V   S  N L             + +F K++ K+LVSW  MI+
Sbjct: 311 DERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMIS 370

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y  N +P +AV+ Y  ME  G+ P+ I++ASVL AC  L  L  G  +H + +R  L  
Sbjct: 371 GYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTS 430

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
            + + N+L+DMY+KC  + +A  VF ++  ++V+SWTS+I    ++ + ++A+  F +M+
Sbjct: 431 YVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI 490

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGR---------------YYFKIMTEQY----KLV 433
           +S L P+S+  VSVLSAC+  G L  G+               +    + + Y    ++ 
Sbjct: 491 LS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRME 549

Query: 434 PRIEHF-ACLVDLL------------GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
           P    F +C  D+             G+ G   E +  + +  + P+E  + SL+ AC  
Sbjct: 550 PAWNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSR 609

Query: 481 YSNMDIGI---LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
              +  G+    + +H FH+APN   +Y  + ++  +AGR  D            IKKMP
Sbjct: 610 SGMVTDGLEYFESMEHKFHIAPNLK-HYASVVDLLGRAGRLEDAYEF--------IKKMP 660



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 196/416 (47%), Gaps = 44/416 (10%)

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
           TY  +L+ C    +   G ++H  V K      +  GN L++M+ + G L EA  V   M
Sbjct: 96  TYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKM 155

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS----------- 240
             +D+ +WN +V GYA+ G FDEAL++   M  + I+PD  T   +L +           
Sbjct: 156 AERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGR 215

Query: 241 ----------------VTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNS 278
                           V N          ++ S + +F ++  ++ +SWN MI+ Y  N 
Sbjct: 216 EVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEND 275

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
           +  E + L+  M    ++P+ +++ SV+ AC  L    LGR++H YV +      + + N
Sbjct: 276 VCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNN 335

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           +L+ M++  G   EA  VF +M  +D+VSWT+MIS Y  +G    AV  ++ M   G+ P
Sbjct: 336 SLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVP 395

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA----CLVDLLGRAGKVEE 454
           D I   SVLSAC+  GLL++G     IM  ++     +  +      L+D+  +   +++
Sbjct: 396 DEITIASVLSACAGLGLLDKG-----IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDK 450

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCL-YSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           A ++  ++P   N   W S++    L Y + +        I  L PN      +LS
Sbjct: 451 ALEVFHRIP-NKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLS 505


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 186/527 (35%), Positives = 293/527 (55%), Gaps = 37/527 (7%)

Query: 45  KTLKKLHAQIIINQHLHSNPSIGLKLMRTYG--ACGQMVDTRHVFDEITNKNVVFFNVLI 102
           + +++LHA   +   + ++P +  +L+  Y       +   R +FD I  ++++ +N +I
Sbjct: 27  QEVEQLHA-FSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTII 85

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
           + YV N   +D + ++  + VH + PD +T PCV+K C+    +  G QIH   +K+G  
Sbjct: 86  KCYVENQFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFG 144

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++F    LV MY KCG +  AR+V + M  KDVV WNS++ GYA+ G  D AL +  EM
Sbjct: 145 SDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEM 204

Query: 223 ESLRIKPDADTMASLLPSVT------------------NTSPENVL-----------SVK 253
                + DA +   L+  ++                  N    N +           S  
Sbjct: 205 P----ERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSAL 260

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           E+F ++   +LV+WN+MIA Y  N    +AV ++  M   G  P+  ++ SVL A   L+
Sbjct: 261 ELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLA 320

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
            L  GR IH Y+E+   + +  L  +L++MYAKCG +  A TVF  ++ + V  WT++I 
Sbjct: 321 VLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIV 380

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
             G+ G    A+ALF +M  +GL P++I F+ VL+AC+HAGL+++GR YF +M  +YK+ 
Sbjct: 381 GLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIE 440

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P +EH+ CLVD+L RAG +EEA + I+ MP+ PN+ IW SL+     +  +DIG  AA  
Sbjct: 441 PTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQR 500

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           +  +AP   G Y+LLSN+YA +G W  V  VR+ M  +G +K PG S
Sbjct: 501 VIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCS 547


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 174/515 (33%), Positives = 291/515 (56%), Gaps = 35/515 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y    ++ D   VFDE+  ++++ +N +I    +N LY  A+ ++  M + G + D
Sbjct: 25  LISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQELD 84

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   V+ AC  S+   +G  +H   V+ GL      GN L+ MY  C   +   ++  
Sbjct: 85  STTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFR 144

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP--- 246
           +M  K+VV+W +M+  Y + G FD+   + +EM    I+PD   + S L +         
Sbjct: 145 NMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKH 204

Query: 247 -------------ENVLSVK----EMFLK-------------LDNKNLVSWNVMIAVYAN 276
                        E VL V     EM++K             +  K+ +SWN +I  Y+ 
Sbjct: 205 GKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSR 264

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           +++  EA  L+ +M +  + PNA+++A +LPA   LS+L  GR++H Y  R+    +  +
Sbjct: 265 SNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFV 323

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            NALVDMY KCG+L  AR +FD +  ++++SWT MI+ YGM G+G DA+ALF +M  SG+
Sbjct: 324 ANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGI 383

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PD+ +F ++L ACSH+GL +EG  +F  M  ++++ P+++H+AC+VDLL   G ++EAY
Sbjct: 384 QPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAY 443

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           + I+ MP+EP+  IW SL+  C ++ N+ +    A+ +F L P  +GYYVLL+NIYA+A 
Sbjct: 444 EFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEAE 503

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           RW  V++++  +  +G+++  G S +E+  +  I 
Sbjct: 504 RWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIF 538



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 153/305 (50%), Gaps = 34/305 (11%)

Query: 149 GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
           GL +H  +VK G        N L++ Y K   +++A  V ++MP +D+++WNS++ G A 
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 209 NGRFDEALDVCREMESLRIKPDADTMASLLPS----------------------VTNTSP 246
           NG +D+A+++   M     + D+ T+ S++P+                      ++ TS 
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 247 ENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
            N L           S  ++F  ++ KN+VSW  MI  Y       +   L+ +M + GI
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGI 182

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
            P+  ++ S L A     +L  G+ +H Y  R  ++  L + NAL++MY KCG + EAR 
Sbjct: 183 RPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARF 242

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           +FD +  +D +SW ++I  Y  S    +A  LF++ML+  L P+++    +L A +    
Sbjct: 243 IFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSS 301

Query: 416 LEEGR 420
           LE GR
Sbjct: 302 LERGR 306



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 167/348 (47%), Gaps = 36/348 (10%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
           L S  S+G  L+  Y  C     T  +F  +  KNVV +  +I SY     +     +++
Sbjct: 116 LISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQ 175

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M + G  PD +     L A +G+ SL  G  +H   ++ G++  L   N L+ MY KCG
Sbjct: 176 EMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCG 235

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
            ++EAR + + +  KD ++WN+++ GY+++   +EA  +  EM  L+++P+A TMA +LP
Sbjct: 236 YMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEM-LLQLRPNAVTMACILP 294

Query: 240 SVTNTSPEN---------------------------------VLSVKEMFLKLDNKNLVS 266
           +  + S                                    +L  + +F  L NKNL+S
Sbjct: 295 AAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLIS 354

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           W +MIA Y  +    +A+ L+ QM+  GI+P+A S +++L AC        G +    + 
Sbjct: 355 WTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMR 414

Query: 327 RK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMI 372
            + +++P L+    +VD+    G+L EA    + M  + D   W S++
Sbjct: 415 NEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLL 462


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 178/534 (33%), Positives = 294/534 (55%), Gaps = 71/534 (13%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VF+ I   N + +N++ R +  +     AL +Y  M   G  P+ +T+P +LK+C+ S +
Sbjct: 31  VFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKT 90

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN---------------- 189
              G QIH  V+K+G D +L+    L++MY + G L++A++V +                
Sbjct: 91  FKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITG 150

Query: 190 ---------------DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
                          ++P KDVV+WN+M++GYA+ G + +AL++ +EM    +KPD  TM
Sbjct: 151 YASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTM 210

Query: 235 ASLLPSVTNTSP---------------------------------ENVLSVKEMFLKLDN 261
           A+++ +   +                                     V +  E+   L N
Sbjct: 211 ATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSN 270

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           K+++SWN +I  Y + ++  EA+ L+ +M   G  PN +++ S+LPAC  L A+ +GR I
Sbjct: 271 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 330

Query: 322 HRYVERK----KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-QDVVSWTSMISAYG 376
           H Y+++K     +     L  +L+DMYAKCG +  A  V D     + + +W +MI  + 
Sbjct: 331 HVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFA 390

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
           M G+   A  +FS+M  +G+ PD I FV +LSACSH+G+L+ GR  F+ M + Y + P++
Sbjct: 391 MHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKL 450

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           EH+ C++DLLG +G  +EA ++I  MPMEP+  IW SL+ AC ++ N+++G   A  +  
Sbjct: 451 EHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIK 510

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI-KKMPG-ASVEMNDQVQ 548
           + P   G YVLLSNIYA AG+W +V ++R  +N KG+ KK+PG +S+E++  V 
Sbjct: 511 IEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVH 564



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 170/369 (46%), Gaps = 42/369 (11%)

Query: 52  AQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLY 111
           AQ + ++  H +      L+  Y + G +   + +FDEI  K+VV +N +I  Y     Y
Sbjct: 129 AQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNY 188

Query: 112 YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGL 171
             AL ++K M      PD  T   V+ AC+ S S+ +G Q+H  +   G   NL   N L
Sbjct: 189 KKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNAL 248

Query: 172 VAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA 231
           + +Y KCG ++ A  +L  + +KDV++WN+++ GY     + EAL + +EM      P+ 
Sbjct: 249 IDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPND 308

Query: 232 DTMASLLPS-------------------------VTNTSPENVLSVKEMFLKLD------ 260
            TM S+LP+                         VTN S     S+ +M+ K        
Sbjct: 309 VTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRT-SLIDMYAKCGDIDAAP 367

Query: 261 --------NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
                   N++L +WN MI  +A +     A D++ +M  +GIEP+ I+   +L AC   
Sbjct: 368 QVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 427

Query: 313 SALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTS 370
             L LGR I R + +   + P L     ++D+    G   EA  + + M  + D V W S
Sbjct: 428 GMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCS 487

Query: 371 MISAYGMSG 379
           ++ A  + G
Sbjct: 488 LLKACKIHG 496


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 174/517 (33%), Positives = 286/517 (55%), Gaps = 36/517 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G++ +   VFDE++ ++V  +N ++     N    +A+ ++  M   G   D
Sbjct: 109 LVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGD 168

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   VL  C      ++ L +H   VK GLD  LF  N L+ +YGK G L+EA+ V +
Sbjct: 169 TVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFH 228

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP--- 246
            M  +D+VTWNS+++G  Q G+   AL + + M    + PD  T+ SL  ++        
Sbjct: 229 GMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRS 288

Query: 247 -------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
                                           N+ + + MF  +  ++ VSWN +I  Y 
Sbjct: 289 AKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYM 348

Query: 276 NNSMPAEAVDLYLQMEVH-GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
            N +  EAV+ Y  M+ H G++    +  SVLPA   L AL  G ++H    +  L  ++
Sbjct: 349 QNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDV 408

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            +   L+D+YAKCG L EA  +F++M  +    W ++IS  G+ G G +A+ LFS+M   
Sbjct: 409 YVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQE 468

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           G+ PD + FVS+L+ACSHAGL+++GR +F +M   Y +VP  +H+AC+ D+LGRAG+++E
Sbjct: 469 GIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDE 528

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A++ I+ MP++P+  +WG+L+ AC ++ N+++G +A+ ++F L P   GYYVL+SN+YAK
Sbjct: 529 AFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAK 588

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQII 550
            G+W  V  VR  +  + ++K PG +S+E+   V + 
Sbjct: 589 VGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVF 625



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 195/417 (46%), Gaps = 55/417 (13%)

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL-DYNLFNGNGLVAMYGKCGCLKEA 184
           F PD +T+P +++A   + S     Q+H   +++GL   ++F    LV  Y + G + EA
Sbjct: 66  FRPDGFTFPSLIRAAPSNAS---AAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEA 122

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
            +V ++M  +DV  WN+M++G  +N R  EA+ +   M    +  D  T++S+LP     
Sbjct: 123 YKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLL 182

Query: 245 SPE------NVLSVKE---------------------------MFLKLDNKNLVSWNVMI 271
             +      +V +VK                            +F  ++ ++LV+WN +I
Sbjct: 183 GDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSII 242

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           +        A A+ ++  M   G+ P+ +++ S+  A          + +H YV R+   
Sbjct: 243 SGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWD 302

Query: 332 -PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
             ++   NA+VDMYAK  ++  A+ +FD M  QD VSW ++I+ Y  +G   +AV  +  
Sbjct: 303 VDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGH 362

Query: 391 MLM-SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLG 447
           M    GL      FVSVL A SH G L++G    ++     K+   ++ +   CL+DL  
Sbjct: 363 MQKHEGLKAIQGTFVSVLPAYSHLGALQQG---MRMHALSIKIGLNVDVYVGTCLIDLYA 419

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVA----------ACCLYSNMDIGILAADHI 494
           + GK+ EA  L ++MP       W ++++          A  L+S M    +  DH+
Sbjct: 420 KCGKLAEAMLLFEKMPRRSTGP-WNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHV 475


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 179/522 (34%), Positives = 298/522 (57%), Gaps = 41/522 (7%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +   L+  Y   G +V+ R +FDE+  +++  +N +I  Y  +    +AL +   +    
Sbjct: 187 VAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRA-- 244

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
              D  T   +L AC+ +     G+ IH   +K GL+  LF  N L+ +Y + G LK+ +
Sbjct: 245 --MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQ 302

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASL-------- 237
           +V + M  +D+++WNS++  Y  N +   A+ + +EM   RI+PD  T+ SL        
Sbjct: 303 KVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLG 362

Query: 238 ------------------LPSVTNTSPENVL--------SVKEMFLKLDNKNLVSWNVMI 271
                             L  +T  +   V+        S + +F  L NK+++SWN +I
Sbjct: 363 EIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTII 422

Query: 272 AVYANNSMPAEAVDLYLQMEVHG--IEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           + YA N   +EA+++Y  ME  G  I  N  +  SVLPAC    AL  G K+H  + +  
Sbjct: 423 SGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNG 482

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           L  ++ +  +L DMY KCG L +A ++F Q+   + V W ++I+ +G  G G  AV LF 
Sbjct: 483 LYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFK 542

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           +ML  G+ PD I FV++LSACSH+GL++EG + F++M   Y + P ++H+ C+VDL GRA
Sbjct: 543 EMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRA 602

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G++E A + IK MP++P+  IWG+L++AC ++ N+D+G +A++H+F + P   GY+VLLS
Sbjct: 603 GQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLS 662

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQII 550
           N+YA AG+W  V  +R   + KG++K PG +S+E++++V++ 
Sbjct: 663 NMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVF 704



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 138/511 (27%), Positives = 254/511 (49%), Gaps = 59/511 (11%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++++ K LHA+++++  +  N  I  KL+  Y   G +   R+ FD I N++V  +N++I
Sbjct: 66  NLQSAKCLHARLVVSNAIQ-NVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMI 124

Query: 103 RSYVNNYLYYDALHVYK-NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
             Y       + +  +   M   G  PD  T+P VLKAC    ++  G +IHC  +K G 
Sbjct: 125 SGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKAC---RNVTDGNKIHCLALKFGF 181

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
            ++++    L+ +Y + G +  AR + ++MP++D+ +WN+M++GY Q+G   EAL +   
Sbjct: 182 MWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDG 241

Query: 222 MESLRIKPDADTMASLLPSVTNTSPEN--------------------------------- 248
           + ++    D+ T+ SLL + T     N                                 
Sbjct: 242 LRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGS 297

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA---ISVASV 305
           +   +++F ++  ++L+SWN +I  Y  N  P  A+ L+ +M +  I+P+    IS+AS+
Sbjct: 298 LKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASI 357

Query: 306 LPACGDLSALLLGRKIHRYVERKK-LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           L   G++ A    R +  +  RK     ++ + NA+V MYAK G +  AR VF+ +  +D
Sbjct: 358 LSQLGEIRAC---RSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKD 414

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSG--LCPDSIAFVSVLSACSHAGLLEEGRYY 422
           V+SW ++IS Y  +G   +A+ +++ M   G  +  +   +VSVL ACS AG L +G   
Sbjct: 415 VISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQG--- 471

Query: 423 FKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
            K+     K    ++ F    L D+ G+ G++++A  L  Q+P   N   W +L+A    
Sbjct: 472 MKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLIACHGF 530

Query: 481 YSNMDIGILAADHIFH--LAPNQSGYYVLLS 509
           + + +  ++    +    + P+   +  LLS
Sbjct: 531 HGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 561



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 188/416 (45%), Gaps = 38/416 (9%)

Query: 15  KPVQALVLSTQYTL-------LSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIG 67
           +P++A++L  +  L       L+  +   IL +  +I+  + +    +       + +IG
Sbjct: 328 QPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIG 387

Query: 68  LKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG-- 125
             ++  Y   G +   R VF+ + NK+V+ +N +I  Y  N    +A+ +Y  M   G  
Sbjct: 388 NAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGE 447

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
              +  T+  VL ACS + +L  G+++H  ++K GL  ++F G  L  MYGKCG L +A 
Sbjct: 448 ISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDAL 507

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            +   +P  + V WN+++A +  +G  ++A+ + +EM    +KPD  T  +LL + +++ 
Sbjct: 508 SLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSG 567

Query: 246 PENVLSVKEMFLKLD---NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
             +        ++ D     +L  +  M+ +Y        A++    M    ++P+A   
Sbjct: 568 LVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMP---LQPDASIW 624

Query: 303 ASVLPACGDLSALLLGRKIHRY---VERKKLQPNLRLENALVDMYAKCG---SLTEARTV 356
            ++L AC     + LG+    +   VE + +  ++ L N    MYA  G    + E R++
Sbjct: 625 GALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSN----MYASAGKWEGVDEIRSI 680

Query: 357 FDQMRCQDVVSWTSM-----ISAYGMSGQGY--------DAVALFSKMLMSGLCPD 399
                 +    W+SM     +  +    Q +        +  AL  K+ M G  PD
Sbjct: 681 TSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPD 736


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 178/489 (36%), Positives = 281/489 (57%), Gaps = 40/489 (8%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +N  +R       +  AL +Y  M  HG  P+ +T+P  LK+C+  +  ++G Q H  + 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVL--NDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           KVG  +  F   GL++MY K   +  AR+V   N    K  V +N++V+GY  N +  +A
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENV------------------LSV----- 252
           + + R+M    +  ++ T+  L+P+    SP N+                  +SV     
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACV--SPINLELGSSLHCSTLKYGFDSDVSVVNCFI 185

Query: 253 ------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                       +++F ++  K L+SWN M++ YA N +    ++LY  M+++G+ P+ +
Sbjct: 186 TMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPV 245

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           ++  VL +C +L A  +G ++   ++      N  L NAL++MYA+CG+LT+A+ VFD M
Sbjct: 246 TLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGM 305

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             + +VSWT++I  YGM G G  AV LF +M+ SG+ PD  AFV VLSACSHAGL ++G 
Sbjct: 306 PERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGL 365

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
            YFK+M   Y+L P  EH++C+VDLLGRAG+++EA  LI+ MP++P+  +WG+L+ AC +
Sbjct: 366 EYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKI 425

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           + N+++  LA + +  L P   GYYVLLSNIY+ A     V R+R  M  K +KK PG S
Sbjct: 426 HKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCS 485

Query: 541 -VEMNDQVQ 548
            VE+  +V 
Sbjct: 486 YVELKGRVH 494



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 184/393 (46%), Gaps = 40/393 (10%)

Query: 78  GQMVD-TRHVFDE--ITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYP 134
           G +VD  R VF+E   + K  V +N L+  YV+N    DA+ +++ M+  G   +  T  
Sbjct: 88  GSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLL 147

Query: 135 CVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK 194
            ++ AC    +L +G  +HCS +K G D ++   N  + MY KCG +  A+++ ++MP K
Sbjct: 148 GLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVK 207

Query: 195 DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE------- 247
            +++WN+MV+GYAQNG     L++ R M+   + PD  T+  +L S  N   +       
Sbjct: 208 GLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVE 267

Query: 248 --------------------------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
                                     N+   + +F  +  + LVSW  +I  Y  +    
Sbjct: 268 FKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGE 327

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENAL 340
            AV L+ +M   GIEP+  +   VL AC        G +  + ++R  +L+P     + +
Sbjct: 328 IAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCM 387

Query: 341 VDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           VD+  + G L EA+T+ + M  + D   W +++ A  +      A   F +++   L P+
Sbjct: 388 VDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE--LEPE 445

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           +I +  +LS         +G    +IM ++ KL
Sbjct: 446 NIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKL 478



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 124/263 (47%), Gaps = 22/263 (8%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y  CG +   + +FDE+  K ++ +N ++  Y  N L  + L +Y+NM ++G  PD  T 
Sbjct: 188 YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTL 247

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             VL +C+   +  VG ++   +   G   N F  N L+ MY +CG L +A+ V + MP 
Sbjct: 248 VGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPE 307

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK 253
           + +V+W +++ GY  +G  + A+ + +EM    I+PD      +L + ++     +    
Sbjct: 308 RTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAG---LTDQG 364

Query: 254 EMFLKLDNKNLV------SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
             + K+  +N         ++ M+ +        EA  L   +E   I+P+     ++L 
Sbjct: 365 LEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTL---IESMPIKPDGAVWGALLG 421

Query: 308 ACGDLSALLLGRKIHRYVERKKL 330
           AC          KIH+ VE  +L
Sbjct: 422 AC----------KIHKNVELAEL 434



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 8/148 (5%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           SNP +   L+  Y  CG +   + VFD +  + +V +  +I  Y  +     A+ ++K M
Sbjct: 277 SNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEM 336

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG----NGLVAMYGK 177
              G +PD   + CVL ACS +     GL+    + +   +Y L  G    + +V + G+
Sbjct: 337 IRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKR---NYQLEPGPEHYSCMVDLLGR 393

Query: 178 CGCLKEARRVLNDMPSK-DVVTWNSMVA 204
            G LKEA+ ++  MP K D   W +++ 
Sbjct: 394 AGRLKEAQTLIESMPIKPDGAVWGALLG 421


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 175/486 (36%), Positives = 274/486 (56%), Gaps = 40/486 (8%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y +   + D R +FDE+ +++VV +  L+  Y    L  +A  V+  M V G
Sbjct: 168 VGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRMVVAG 227

Query: 126 FD-PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
              P+  T      A      L +G  +H  VV+ G+  ++   N LV M+GKCGC+  A
Sbjct: 228 GGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASA 287

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           + + + MP KDV +W SMV+ YA+ G  + A                             
Sbjct: 288 KEIFDGMPIKDVYSWTSMVSAYAKCGDLENA----------------------------- 318

Query: 245 SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
                    ++F ++ N+N VSW+ M+A Y+  ++P EA+ ++  M   G+EP   ++ S
Sbjct: 319 --------GKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVS 370

Query: 305 VLPACGDLSALLLGRKIH-RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           VL AC  L  L +GR ++  Y+   K++  + L NA +DM+AKCG +  A  +F  M  +
Sbjct: 371 VLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDK 430

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           +VVSW +MI A+ + GQ  +A+ LF K    G+ PD I ++ VLSACSH+GL+ EGRY+F
Sbjct: 431 NVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHF 490

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
           K M   Y + PR EH+AC++DLLG+ G +EEA+++ + MP+  +E  WG+L+ AC ++ N
Sbjct: 491 KEMKIVYGIEPRAEHYACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHGN 550

Query: 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVE 542
           ++IG  AAD +  L P+ SG YVL+S IYA   +WG VK +R  M  +G+KK PG +S+E
Sbjct: 551 VEIGKCAADKLVGLDPSDSGIYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKNPGCSSIE 610

Query: 543 MNDQVQ 548
           ++ +  
Sbjct: 611 VDGKFH 616



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 18/195 (9%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           L+   I++  +    ++    +  +  CG +     +F  + +KNVV +N +I ++  + 
Sbjct: 387 LYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHG 446

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV--GLDYNLFN 167
              +ALH+++     G  PD  TY  VL ACS S  +  G + H   +K+  G++    +
Sbjct: 447 QSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEG-RYHFKEMKIVYGIEPRAEH 505

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
              ++ + GK G L+EA  V   MP   D   W ++             L+ CR   ++ 
Sbjct: 506 YACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGAL-------------LNACRMHGNVE 552

Query: 227 I-KPDADTMASLLPS 240
           I K  AD +  L PS
Sbjct: 553 IGKCAADKLVGLDPS 567


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  330 bits (847), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 179/543 (32%), Positives = 291/543 (53%), Gaps = 35/543 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++HAQ++    + S+  IG  L+  Y   G M D R VFD +  ++V  FNV++  Y  
Sbjct: 178 KEVHAQVVTAGFV-SDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAK 236

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +  +  A  ++  M   G  P+  ++  +L  C    +L  G  +H   +  GL  ++  
Sbjct: 237 SGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRV 296

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L+ MY  CG ++ ARRV ++M  +DVV+W  M+ GYA+NG  ++A  +   M+   I
Sbjct: 297 ATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGI 356

Query: 228 KPDADTMASLLPSVTNTSPEN---------------------------------VLSVKE 254
           +PD  T   ++ +   ++  N                                 +   ++
Sbjct: 357 QPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQ 416

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F  +  +++VSW+ MI  Y  N    EA + +  M+   IEP+ ++  ++L ACG L A
Sbjct: 417 VFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGA 476

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           L +G +I+    +  L  ++ L NAL+ M AK GS+  AR +FD M  +DV++W +MI  
Sbjct: 477 LDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGG 536

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
           Y + G   +A+ LF +ML     P+S+ FV VLSACS AG ++EGR +F  + E   +VP
Sbjct: 537 YSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVP 596

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
            ++ + C+VDLLGRAG+++EA  LIK MP++P   IW SL+ AC ++ N+D+   AA+  
Sbjct: 597 TVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERC 656

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALP 553
             + P     YV LS++YA AG W +V +VRK M S+GI+K  G + +E+  +V    + 
Sbjct: 657 LMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVE 716

Query: 554 LRS 556
            RS
Sbjct: 717 DRS 719



 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 145/497 (29%), Positives = 238/497 (47%), Gaps = 45/497 (9%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L++ Y  CG + + R +FD + NK VV +N LI  Y       +A  +++ M   G +P 
Sbjct: 98  LIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPS 157

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T+  VL ACS    L  G ++H  VV  G   +   G  LV+MY K G + +AR+V +
Sbjct: 158 IITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFD 217

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN------ 243
            +  +DV T+N MV GYA++G +++A ++   M+ + +KP+  +  S+L           
Sbjct: 218 GLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAW 277

Query: 244 ---------------------------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                      T+  ++   + +F  +  +++VSW VMI  YA 
Sbjct: 278 GKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAE 337

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N    +A  L+  M+  GI+P+ I+   ++ AC   + L   R+IH  V+      +L +
Sbjct: 338 NGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLV 397

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
             ALV MYAKCG++ +AR VFD M  +DVVSW++MI AY  +G G +A   F  M  S +
Sbjct: 398 STALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNI 457

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK--LVPRIEHFACLVDLLGRAGKVEE 454
            PD + ++++L+AC H G L+ G    +I T+  K  LV  +     L+ +  + G VE 
Sbjct: 458 EPDGVTYINLLNACGHLGALDVG---MEIYTQAIKADLVSHVPLGNALIIMNAKHGSVER 514

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF--HLAPNQSGYYVLLSNIY 512
           A  +   M +  +   W +++    L+ N    +   D +      PN     V    + 
Sbjct: 515 ARYIFDTM-VRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNS----VTFVGVL 569

Query: 513 AKAGRWGDVKRVRKFMN 529
           +   R G V   R+F  
Sbjct: 570 SACSRAGFVDEGRRFFT 586



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 192/401 (47%), Gaps = 49/401 (12%)

Query: 117 VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYG 176
           V + +   G   D  TY  + + C+      +G Q+   +++ G   N++  N L+ +Y 
Sbjct: 44  VLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYS 103

Query: 177 KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS 236
            CG + EAR++ + + +K VVTWN+++AGYAQ G   EA  + R+M    ++P   T  S
Sbjct: 104 ICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLS 163

Query: 237 LL-----PSVTNTSPE----------------------------NVLSVKEMFLKLDNKN 263
           +L     P+  N   E                            ++   +++F  L  ++
Sbjct: 164 VLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRD 223

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR 323
           + ++NVM+  YA +    +A +L+ +M+  G++PN IS  S+L  C    AL  G+ +H 
Sbjct: 224 VSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHA 283

Query: 324 YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383
                 L  ++R+  +L+ MY  CGS+  AR VFD M+ +DVVSWT MI  Y  +G   D
Sbjct: 284 QCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIED 343

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA--- 440
           A  LF+ M   G+ PD I ++ +++AC+ +  L   R       E +  V  I  F    
Sbjct: 344 AFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAR-------EIHSQVD-IAGFGTDL 395

Query: 441 ----CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
                LV +  + G +++A  +   MP   +   W +++ A
Sbjct: 396 LVSTALVHMYAKCGAIKDARQVFDAMP-RRDVVSWSAMIGA 435



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 154/342 (45%), Gaps = 57/342 (16%)

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
           NV   +++F  ++NK +V+WN +IA YA      EA  L+ QM   G+EP+ I+  SVL 
Sbjct: 107 NVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLD 166

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           AC   + L  G+++H  V       + R+  ALV MY K GS+ +AR VFD +  +DV +
Sbjct: 167 ACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVST 226

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL----------------SACS 411
           +  M+  Y  SG    A  LF +M   GL P+ I+F+S+L                + C 
Sbjct: 227 FNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCM 286

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIE---------------HFACLVDLLGRAGKVEEAY 456
           +AGL+++ R    ++   Y     IE                +  +++     G +E+A+
Sbjct: 287 NAGLVDDIRVATSLI-RMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAF 345

Query: 457 DLIKQMPME---PNERIWGSLVAACCLYSNM----------DIGILAADHIFHLAPNQSG 503
            L   M  E   P+   +  ++ AC + +N+          DI     D +   A     
Sbjct: 346 GLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTA----- 400

Query: 504 YYVLLSNIYAKAGRWGDVKRVRKFMNSKGI---KKMPGASVE 542
               L ++YAK G   D ++V   M  + +     M GA VE
Sbjct: 401 ----LVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVE 438



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 109/229 (47%), Gaps = 33/229 (14%)

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A D+  ++   G   ++ +   +   C +L    LG+++  ++ +   Q N+   N L+ 
Sbjct: 41  ANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIK 100

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           +Y+ CG++TEAR +FD +  + VV+W ++I+ Y   G   +A ALF +M+  GL P  I 
Sbjct: 101 LYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIIT 160

Query: 403 FVSVLSACSHAGLLEEGRYY------------FKIMTEQYKL------------------ 432
           F+SVL ACS    L  G+              F+I T    +                  
Sbjct: 161 FLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLH 220

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDL---IKQMPMEPNERIWGSLVAAC 478
           +  +  F  +V    ++G  E+A++L   ++Q+ ++PN+  + S++  C
Sbjct: 221 IRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGC 269


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 176/501 (35%), Positives = 276/501 (55%), Gaps = 42/501 (8%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACS---G 142
           +FD +    +  +N +IR +  +      L  Y  +  HG  PD +T+P +LKA S    
Sbjct: 60  LFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN 119

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
            N      Q +  +VK GLD++ F  N LV+ +  CG +  +RR+  +   KDVV+W ++
Sbjct: 120 ENPF----QFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTAL 175

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN---------------TSPE 247
           + G  +NGR  EAL+   EM S  ++ D  T+ S+L +                   S  
Sbjct: 176 INGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGR 235

Query: 248 NVLSVK-------------------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
            +  V                    ++F ++  +NLVSW  +IA Y   +   EA+ ++ 
Sbjct: 236 VIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQ 295

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           +M + GIEPN  +V S L AC  L +L  GR +H YV+R KL  N +L  ALVDMY+KCG
Sbjct: 296 EMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCG 355

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
            + EA  VF+++  +DV  WT+MI+   M G    ++ LFS+M+ S + P+ + F+ VLS
Sbjct: 356 CVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLS 415

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
           AC+H GL++EG   F++M   Y+L P ++H+ C+VDLLGRAG++EEA   I+ MPMEP  
Sbjct: 416 ACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTP 475

Query: 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
            +WG+L + C ++   ++G    +H+  L P+ SG Y+LL+N+Y++  +W     VR+ M
Sbjct: 476 GVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLM 535

Query: 529 NSKGIKKMPGAS-VEMNDQVQ 548
             KG+ K PG S +E+N  + 
Sbjct: 536 KGKGVDKSPGCSWIEVNGVIH 556



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 152/326 (46%), Gaps = 35/326 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  +  CG +  +R +F E   K+VV +  LI   + N    +AL  +  M   G + D
Sbjct: 144 LVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVD 203

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGCLKEARRVL 188
             T   VL A +    +  G  +H   V+ G + ++++ G+ LV MY KCG   +A +V 
Sbjct: 204 EVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVF 263

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP--------- 239
           N+MP++++V+W +++AGY Q  R+ EAL V +EM    I+P+  T+ S L          
Sbjct: 264 NEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLD 323

Query: 240 -----------------SVTNTSPENVLS----VKE---MFLKLDNKNLVSWNVMIAVYA 275
                            S   T+  ++ S    V E   +F KL  K++  W  MI   A
Sbjct: 324 QGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLA 383

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY-VERKKLQPNL 334
                  +++L+ QM    ++PN ++   VL AC     +  G ++ R  +   +L+PN+
Sbjct: 384 MRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNV 443

Query: 335 RLENALVDMYAKCGSLTEARTVFDQM 360
                +VD+  + G L EA    + M
Sbjct: 444 DHYGCMVDLLGRAGRLEEAIKFIESM 469



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 137/304 (45%), Gaps = 9/304 (2%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y  CG   D   VF+E+  +N+V +  LI  YV    Y +AL V++ M + G
Sbjct: 242 VGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEG 301

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            +P+  T    L AC+   SL  G  +H  V +  L  N   G  LV MY KCGC+ EA 
Sbjct: 302 IEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEAL 361

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            V   +P+KDV  W +M+ G A  G    +L++  +M   R++P+  T   +L +  +  
Sbjct: 362 LVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGG 421

Query: 246 --PENVLSVKEMFLKLD-NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
              E +   + M        N+  +  M+ +        EA+     +E   +EP     
Sbjct: 422 LVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKF---IESMPMEPTPGVW 478

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV-DMYAKCGSLTEARTVFDQMR 361
            ++   C    A  LG  I  ++   KLQP+      L+ ++Y++C     A  V   M+
Sbjct: 479 GALFSGCMIHKAFELGEHIGNHL--IKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMK 536

Query: 362 CQDV 365
            + V
Sbjct: 537 GKGV 540



 Score = 43.1 bits (100), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 2/145 (1%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           N  +G  L+  Y  CG + +   VF+++  K+V  +  +I           +L+++  M 
Sbjct: 340 NSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMI 399

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQI-HCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
                P+  T+  VL AC+    +  GL++    +    L+ N+ +   +V + G+ G L
Sbjct: 400 RSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRL 459

Query: 182 KEARRVLNDMPSKDVV-TWNSMVAG 205
           +EA + +  MP +     W ++ +G
Sbjct: 460 EEAIKFIESMPMEPTPGVWGALFSG 484


>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
 gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
          Length = 546

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 188/519 (36%), Positives = 294/519 (56%), Gaps = 21/519 (4%)

Query: 34  CNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGA---CGQMVDTRHVFDEI 90
           CN++L        LK++HA +II +  +SN +  L+ +   GA    G +     VF +I
Sbjct: 23  CNNLL-------ALKQIHATLII-KGFNSNRA-ALRELIFAGAMTISGAINYAHQVFAQI 73

Query: 91  TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGL 150
           T  ++  +N ++R    +      + +Y  M   G  PD +T+  +LK C+       G 
Sbjct: 74  TEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTRLEWRKTGF 133

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
            +H  V+K G + N F  N L+  +  CG L  AR +  D+P + VV+W+++ AGYA+ G
Sbjct: 134 CVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRG 193

Query: 211 RFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVM 270
               A  +  EM    +K        +   V N   EN    + +F +   K++V+WN M
Sbjct: 194 ELGVARQIFDEMP---VKDLVSWNVMITGYVKNGEMENA---RTLFDEAPEKDVVTWNTM 247

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV-ERKK 329
           IA Y       +A++++ +M   G  P+ +++ S+L AC DL  L +GRK+H  + E  +
Sbjct: 248 IAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTR 307

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
              ++ L NALVDMYAKCGS+  A  VF +MR +DV +W S+I      G   +++ LF+
Sbjct: 308 GDLSVLLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFA 367

Query: 390 KM-LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
           +M  +  + P+ I FV V+ ACSHAG +EEGR YFK+M E+Y + P + H  C+VDLLGR
Sbjct: 368 EMQALKNIKPNEITFVGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGR 427

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508
           AG + EA++LI +M +EPN  IW +L+ AC ++ N+++G LA + +  L  ++SG YVLL
Sbjct: 428 AGLLSEAFELIAKMEIEPNAIIWRTLLGACRVHGNVELGRLANERLLKLRRDESGDYVLL 487

Query: 509 SNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
           SNIYA AG W   + VRK M+  G++K  G S +E +D+
Sbjct: 488 SNIYASAGEWDGAEEVRKLMDDGGVRKEAGRSLIEADDR 526


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 190/576 (32%), Positives = 305/576 (52%), Gaps = 73/576 (12%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD----TRHVFDEITNKNVVFFN 99
           +++L+ +HAQ+I    LH N +  L  +  +       D       VF+ I   N++ +N
Sbjct: 15  LQSLRIIHAQMI-KTGLH-NTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWN 72

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            + R +  +     A+ +Y  M   G  P+ YT+P +LK+C+       G QIH  V+K+
Sbjct: 73  TMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKL 132

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLN------------------------------ 189
           G + +L+    L++MY K G  K+A +V +                              
Sbjct: 133 GYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMF 192

Query: 190 -DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP-- 246
            ++P KDVV+WN++++GYA  G   EALD+ +EM    +KPD  TM +++ +   +    
Sbjct: 193 DEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQ 252

Query: 247 -------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
                                            V +   +F  L NK+++SWN MI  Y 
Sbjct: 253 LGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYT 312

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER--KKLQPN 333
           + ++  EA+ L+ +M   G  PN +++ S+LPAC  L A+  GR IH Y+++  K +   
Sbjct: 313 HLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNA 372

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             L  +L+DMYAKCG +  A  VF+ M  + + +  +MI  + M G+   A  +FS+M  
Sbjct: 373 SSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRK 432

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           +G+ PD I FV +LSACSH+G+L+ GR  F+ MT+ YK+ P++EH+ C++DLLG  G  +
Sbjct: 433 NGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFK 492

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA ++I  M MEP+  IW SL+ AC ++ N+++G   A  +  + P   G YVLLSNIYA
Sbjct: 493 EAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYA 552

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
            AGRW +V  +R  +N KG+KK+PG +S+E++  V 
Sbjct: 553 TAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVH 588


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 182/549 (33%), Positives = 305/549 (55%), Gaps = 49/549 (8%)

Query: 7   LCRHF-STTKPVQALVLSTQYTLLSGDACND-----ILDKYPDIKTL---KKLHAQIIIN 57
           L R F S+ KP+Q L++  Q    S    N      ++    ++ +L   + +H  +++ 
Sbjct: 101 LIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHG-MVMK 159

Query: 58  QHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHV 117
               S+  I   L+  Y + G +     VF +I  K++V +N +I  +V      +AL +
Sbjct: 160 ASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQL 219

Query: 118 YKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK 177
           +K M +    P+  T   VL AC+    L  G      + + G+D NL   N ++ MY K
Sbjct: 220 FKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVK 279

Query: 178 CGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASL 237
           CG L++ARR+ + M  KD+V+W +M+ GYA+ G +D A                      
Sbjct: 280 CGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAA---------------------- 317

Query: 238 LPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIE 296
                          + +F  +  +++ +WN +I+ Y  N  P EA+ ++ +++++   +
Sbjct: 318 ---------------RRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTK 362

Query: 297 PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTV 356
           PN +++AS L AC  L A+ LG  IH Y++++ ++ N  +  +L+DMY+KCG L +A  V
Sbjct: 363 PNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEV 422

Query: 357 FDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL 416
           F  +  +DV  W++MI+   M G G  A+ LFSKM  + + P+++ F ++L ACSH+GL+
Sbjct: 423 FYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLV 482

Query: 417 EEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
           +EGR +F  M   Y +VP  +H+AC+VD+LGRAG +EEA +LI++MP+ P+  +WG+L+ 
Sbjct: 483 DEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLG 542

Query: 477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKM 536
           AC +Y N+++  +A   +     N  G YVLLSNIYAKAG+W  V R+R+ M   G++K 
Sbjct: 543 ACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKE 602

Query: 537 PG-ASVEMN 544
           PG +S+E+N
Sbjct: 603 PGCSSIEVN 611



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 148/292 (50%), Gaps = 12/292 (4%)

Query: 230 DADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
           D  +   L  +   +SP ++    ++F ++   NL +WN +I  +A++  P + + +++Q
Sbjct: 61  DPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQ 120

Query: 290 MEVHGIE--PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
           M +H  +  PN+ +   V+ A  ++S+LL G+ IH  V +     +L + N+L+  Y+  
Sbjct: 121 M-LHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSL 179

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           G L  A  VF ++  +D+VSW SMIS +   G   +A+ LF +M M    P+ +  V VL
Sbjct: 180 GDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVL 239

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
           SAC+    LE GR+    +      +  I   A ++D+  + G +E+A  L  +M  E +
Sbjct: 240 SACAKRIDLEFGRWACDYIERNGIDINLILSNA-MLDMYVKCGSLEDARRLFDKME-EKD 297

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ--SGYYVLLSNIYAKAGR 517
              W +++       + D    AA  +F + P +  + +  L+S+ Y + G+
Sbjct: 298 IVSWTTMIDGYAKVGDYD----AARRVFDVMPREDITAWNALISS-YQQNGK 344


>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 171/508 (33%), Positives = 285/508 (56%), Gaps = 40/508 (7%)

Query: 36  DILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGAC--GQMVDTRHVFDEITNK 93
            +L++  +I  LK++H Q++    +    ++  +L+ TY +     +   R VFD I++ 
Sbjct: 16  SLLERCSNIGELKQIHGQLLKKGTIRHKLTVS-RLLTTYASMEFSNLTYARMVFDRISSP 74

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           N V +N +IR+Y N+    +AL +Y  M  H    + YT+P +LKACS  ++L    QIH
Sbjct: 75  NTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIH 134

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
             ++K G    ++  N L+ +Y   G +K A  + + +PS+D+V+WN+M+ GY + G  +
Sbjct: 135 VQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVE 194

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273
            A  + + M                       PE              KN++SW  MI  
Sbjct: 195 MAYKIFQAM-----------------------PE--------------KNVISWTSMIVG 217

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           +    M  EA+ L  QM V GI+P+ I+++  L AC  L AL  G+ IH Y+ + K++ +
Sbjct: 218 FVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKID 277

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             L  AL+DMY KCG + +A  VF ++  + V +WT++I  + + G+G +A+  F++M  
Sbjct: 278 PVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQK 337

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           +G+ P S  F +VL+ACSH GL+EEG+  F+ M+  Y + P +EH+ C+VDLLGRAG ++
Sbjct: 338 AGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCMVDLLGRAGFLK 397

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA + ++ MP++PN  IWGSL+ AC L+ ++++G      +  L P   G Y+ L++I+A
Sbjct: 398 EAKEFVESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIELDPEHDGRYIHLASIHA 457

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGASV 541
            AG W +  +VR  + +KG+  +PG S 
Sbjct: 458 AAGEWDEASQVRSHIKNKGLLNLPGCST 485


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 174/453 (38%), Positives = 272/453 (60%), Gaps = 41/453 (9%)

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
           P V+KAC     LL G +IHC V+K+G ++++F    LV MY + G + +AR++ +DMP+
Sbjct: 1   PPVVKACG---DLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPA 57

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK 253
           +D  +WN+M++GY QNG   EALD+  EM    +K DA T+AS+LP        ++LS K
Sbjct: 58  RDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVG--DILSGK 115

Query: 254 ----------------------EMFLKLDN------------KNLVSWNVMIAVYANNSM 279
                                  M+ K  +            K++VSWN +I  YA N +
Sbjct: 116 LIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLIKDVVSWNTLITGYAQNGL 175

Query: 280 PAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
            +EA+++YL ME H  I PN  +  S+LPA   + AL  G +IH  V +  L  ++ +  
Sbjct: 176 ASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGT 235

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
            L+DMY KCG L +A ++F Q+  ++ V W +MIS YG+ G G  A+ LF +M    + P
Sbjct: 236 CLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKP 295

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           D I FVS+LSACSH+GL+ + ++ F +M E+Y + P ++H+ C+VDL GRAG++E A++ 
Sbjct: 296 DHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNF 355

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
           IK+MP++P+   WG+L+ AC ++ N+++G  A++ +F +     GYYVLLSNIYA  G+W
Sbjct: 356 IKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKW 415

Query: 519 GDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQII 550
             V  VR     +G++K PG +S+ +N++V + 
Sbjct: 416 EGVDDVRSLARDRGLRKNPGWSSIILNNKVDVF 448



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 179/383 (46%), Gaps = 45/383 (11%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC D+LD        KK+H  +++      +  +   L+  Y   G + D R +FD++  
Sbjct: 6   ACGDLLDG-------KKIHC-LVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPA 57

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           ++   +N +I  Y  N    +AL +   M + G   D  T   VL  C+    +L G  I
Sbjct: 58  RDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLI 117

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  V+K GL++ LF  N L+ MY K G L  A++V   +  KDVV+WN+++ GYAQNG  
Sbjct: 118 HLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFG-LLIKDVVSWNTLITGYAQNGLA 176

Query: 213 DEALDVCREMES-LRIKPDADTMASLLPSVTNTSP------------ENVL--------- 250
            EA++V   ME    I P+  T  S+LP+ ++               +N L         
Sbjct: 177 SEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTC 236

Query: 251 ------------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                           +F ++  KN V WN MI+ Y  +    +A++L+ +M+   ++P+
Sbjct: 237 LIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPD 296

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVF 357
            I+  S+L AC     +   +     +E +  ++P+L+    +VD++ + G L  A    
Sbjct: 297 HITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFI 356

Query: 358 DQMRCQ-DVVSWTSMISAYGMSG 379
            +M  Q D  +W ++++A  + G
Sbjct: 357 KKMPIQPDASAWGALLNACRIHG 379



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 142/283 (50%), Gaps = 13/283 (4%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           DI + K +H  +I    L     +   L+  Y   G +   + VF  +  K+VV +N LI
Sbjct: 110 DILSGKLIHLYVI-KHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLI 167

Query: 103 RSYVNNYLYYDALHVYKNMSVHG-FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
             Y  N L  +A+ VY  M  H    P+  T+  +L A S   +L  G++IH  V+K  L
Sbjct: 168 TGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCL 227

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             ++F G  L+ MYGKCG L +A  +   +P K+ V WN+M++ Y  +G  ++AL++ RE
Sbjct: 228 YSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFRE 287

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLVSWNVMIAVYAN 276
           M++ R+KPD  T  SLL + +++    V   +  F  ++ +     +L  +  M+ ++  
Sbjct: 288 MKAERVKPDHITFVSLLSACSHSGL--VSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGR 345

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
                 A +   +M    I+P+A +  ++L AC     + LG+
Sbjct: 346 AGELEMAFNFIKKMP---IQPDASAWGALLNACRIHGNIELGK 385


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 184/510 (36%), Positives = 279/510 (54%), Gaps = 42/510 (8%)

Query: 44  IKTLKKLHAQIIINQHLHSNPS-IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           I   ++LH+ I+   H +S P  +   L+  YG CG++   R +F+ + ++NV  + V +
Sbjct: 76  ISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAM 135

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLV--GLQIHCSVVKVG 160
            ++ +N  + +AL  ++ M   G  PD  T+  +L A +   +  +  G +IH      G
Sbjct: 136 AAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISG 195

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
           L  N+  G  +++MYGKCG L +AR    ++  K+ VTWN+M+  Y  +GR  EAL++ R
Sbjct: 196 LLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFR 255

Query: 221 EMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
           EM       DAD+                               V WN MIA YA +   
Sbjct: 256 EMH------DADS-------------------------------VCWNAMIAAYAQHGRG 278

Query: 281 AEAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
            +A+DLY  M +   + P   +  +V+  C +LSAL  GR IH  V       NL + NA
Sbjct: 279 KQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNA 338

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           LV MY KCG L EA  VF  M+ +D +SW ++IS+Y   G    A+ L+ +M + G+ P 
Sbjct: 339 LVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPT 398

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
            + FV +LSACSH GL+ +G  YF  M + +++ P + HF C++DLLGR G++ EA  ++
Sbjct: 399 EVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVL 458

Query: 460 KQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519
           K MP++ N   W SL+ AC  + ++  G+ AAD +    P  SG YVLLSNIYA AGRW 
Sbjct: 459 KSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWK 518

Query: 520 DVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           DV+++RK M ++G+KK PG S +E+ D V 
Sbjct: 519 DVEKIRKIMAARGVKKSPGKSWIEIGDVVH 548



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 106/207 (51%), Gaps = 9/207 (4%)

Query: 275 ANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV---ERKKL 330
           AN+    E++   +Q+ E   +E + +  A+++  CG  +A+   R++H ++        
Sbjct: 35  ANSFGERESLHKSIQLLESRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNS 94

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
           QP   L N L++MY KCG L  AR +F+ M  ++V +WT  ++A+  +G   +A+  F +
Sbjct: 95  QPPF-LANLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRR 153

Query: 391 MLMSGLCPDSIAFVSVL--SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
           M  SG  PD + F  +L   A   A  +++GR   +       L+P +     ++ + G+
Sbjct: 154 MYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHR-YARISGLLPNVVVGTAVISMYGK 212

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLV 475
            G++++A    +++  + N   W +++
Sbjct: 213 CGRLDDARAAFEELQWK-NSVTWNAMM 238



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 25/188 (13%)

Query: 36  DILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNV 95
           D+  +   +K  + +HA++       +N  +   L+  YG CG + +   VF  +  K+ 
Sbjct: 306 DVCAELSALKQGRAIHARVRATN-FDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDE 364

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
           + +N +I SY  +     AL +Y+ M + G  P   T+  +L ACS           H  
Sbjct: 365 ISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACS-----------HGG 413

Query: 156 VVKVGLDY------------NLFNGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSM 202
           +V  GLDY            ++ +   ++ + G+ G L EA  VL  MP   + V W S+
Sbjct: 414 LVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSL 473

Query: 203 VAGYAQNG 210
           +     +G
Sbjct: 474 LGACKTHG 481


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 177/516 (34%), Positives = 283/516 (54%), Gaps = 37/516 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y     + D   VF+ +  ++ + +N +I    +N L  +A+ ++  M   G + D
Sbjct: 458 LISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELD 517

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   VL AC+ S     G  +H   VK GL       N L+ MY  C   +   ++  
Sbjct: 518 SVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFR 577

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA------------------ 231
            M  K+VV+W +M+  Y + G FD+   + +EM    I+PD                   
Sbjct: 578 SMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQ 637

Query: 232 ----------DTMASLLPSVTNTSPE------NVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
                     + M  LLP V N   E      NV   + +F ++ NK+++SWN +I  Y+
Sbjct: 638 GKSVHGYTIRNGMEKLLP-VANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYS 696

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            N+ P E+  L+  M +    PNA+++  +LPA   +S+L  GR+IH Y  R+    +  
Sbjct: 697 RNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSY 755

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
             NALVDMY KCG+L  AR +FD++  ++++SWT MI+ YGM G G  A+ALF +M  SG
Sbjct: 756 ASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSG 815

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + PD+ +F ++L AC H+GL  EGR +FK M ++YK+ P+++H+ C+VDLL R G ++EA
Sbjct: 816 IEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEA 875

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
            + I+ MP+EP+  IW SL+  C ++ N+ +    AD +F L P  +GYYVLL+NIYA+A
Sbjct: 876 LEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEA 935

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            RW  VK+++  +  +G+++  G S +E+  +V + 
Sbjct: 936 ERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVF 971



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 213/433 (49%), Gaps = 51/433 (11%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  CG+M D   VFD +  ++ + +N +I    +N  +  A+ ++  M   G +  
Sbjct: 245 LIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEIS 304

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN----------GNGLVAMYGKCG 179
             T   VL AC+G    L+G  +H   VK GL + L +          G+ LV MY KCG
Sbjct: 305 SVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCG 364

Query: 180 CLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238
            +  ARRV + M SK +V  WN ++ GYA+ G F+E+L +  +M  L I PD   ++ LL
Sbjct: 365 DMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLL 424

Query: 239 PSVTNTS--------------------------------PENVLSVKEM-FLKLDNKNLV 265
             +T  S                                  N++    + F ++  ++ +
Sbjct: 425 KCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTI 484

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           SWN +I+  ++N + +EA++L+++M   G E +++++ SVLPAC        GR +H Y 
Sbjct: 485 SWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYS 544

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
            +  L     L NAL+DMY+ C        +F  M  ++VVSWT+MI++Y  +G  +D V
Sbjct: 545 VKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGL-FDKV 603

Query: 386 A-LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR--YYFKIMTEQYKLVPRIEHFACL 442
           A L  +M++ G+ PD  A  S L A +    L++G+  + + I     KL+P       L
Sbjct: 604 AGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVAN---AL 660

Query: 443 VDLLGRAGKVEEA 455
           +++  +   VEEA
Sbjct: 661 MEMYVKCRNVEEA 673



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 193/392 (49%), Gaps = 35/392 (8%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           + ++G KL+  Y  CG M   R VFD +++K NV  +N+++  Y     + ++L ++  M
Sbjct: 349 DAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQM 408

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              G  PD +   C+LK  +  +    GL  H  +VK+G        N L++ Y K   +
Sbjct: 409 HELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMI 468

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS- 240
            +A  V N MP +D ++WNS+++G + NG   EA+++   M +   + D+ T+ S+LP+ 
Sbjct: 469 GDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPAC 528

Query: 241 ---------------------VTNTSPENVL-----------SVKEMFLKLDNKNLVSWN 268
                                +  TS  N L           S  ++F  +  KN+VSW 
Sbjct: 529 AQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWT 588

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
            MI  Y    +  +   L  +M + GI P+  +V S L A     +L  G+ +H Y  R 
Sbjct: 589 AMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRN 648

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
            ++  L + NAL++MY KC ++ EAR +FD++  +DV+SW ++I  Y  +    ++ +LF
Sbjct: 649 GMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLF 708

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           S ML+    P+++    +L A +    LE GR
Sbjct: 709 SDMLLQ-FRPNAVTMTCILPAAASISSLERGR 739



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 188/404 (46%), Gaps = 52/404 (12%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNK--NVVFFNVLIRSYVNNYLYYDALHVYKNMSV 123
           +G +L+  Y  CG + + R VFD +  +  +V  +  L+ +Y     + +A+ +++ M  
Sbjct: 138 LGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQC 197

Query: 124 HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183
            G  PD +   CVLK  S   SL  G  IH  + K+GL       N L+A+Y +CG +++
Sbjct: 198 CGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMED 257

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP---- 239
           A RV + M  +D ++WNSM+ G   NG    A+D+  +M S   +  + T+ S+LP    
Sbjct: 258 AARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAG 317

Query: 240 ------------------------SVTNTSPENVLSVKEMFLKLDNKNLVS--------- 266
                                   SV +   +  L  K +F+ +   ++ S         
Sbjct: 318 LGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMS 377

Query: 267 -------WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
                  WN+++  YA      E++ L++QM   GI P+  +++ +L     LS    G 
Sbjct: 378 SKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGL 437

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
             H Y+ +        + NAL+  YAK   + +A  VF++M  QD +SW S+IS    +G
Sbjct: 438 VAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNG 497

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
              +A+ LF +M   G   DS+  +SVL AC+ +      RY+F
Sbjct: 498 LNSEAIELFIRMWTQGQELDSVTLLSVLPACAQS------RYWF 535



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 168/352 (47%), Gaps = 36/352 (10%)

Query: 56  INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDAL 115
           +   L    S+   L+  Y  C     T  +F  +  KNVV +  +I SY+   L+    
Sbjct: 545 VKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVA 604

Query: 116 HVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMY 175
            + + M + G  PD +     L A +G  SL  G  +H   ++ G++  L   N L+ MY
Sbjct: 605 GLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMY 664

Query: 176 GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA 235
            KC  ++EAR + + + +KDV++WN+++ GY++N   +E+  +  +M  L+ +P+A TM 
Sbjct: 665 VKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDM-LLQFRPNAVTMT 723

Query: 236 SLLPSVTNTSP---------------------------------ENVLSVKEMFLKLDNK 262
            +LP+  + S                                    +L  + +F +L  K
Sbjct: 724 CILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKK 783

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH 322
           NL+SW +MIA Y  +     A+ L+ QM   GIEP+A S +++L AC        GR+  
Sbjct: 784 NLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFF 843

Query: 323 RYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMI 372
           + ++++ K++P L+    +VD+ ++ G L EA    + M  + D   W S++
Sbjct: 844 KAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLL 895



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 181/406 (44%), Gaps = 64/406 (15%)

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHC-----SVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183
           D  +Y  V++ C    SL    + H      S    G   ++  G  LV  Y KCG L E
Sbjct: 96  DVRSYCMVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVL-GKRLVLAYLKCGDLGE 154

Query: 184 ARRVLNDMP--SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
           AR V + MP  + DV  W S+++ YA+ G F EA+ + R+M+   + PDA  ++ +L  V
Sbjct: 155 ARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCV 214

Query: 242 TN----TSPENVLSVKE-----------------------------MFLKLDNKNLVSWN 268
           ++    T  E +  + E                             +F  +  ++ +SWN
Sbjct: 215 SSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWN 274

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
            MI    +N     AVDL+ +M   G E ++++V SVLPAC  L   L+G+ +H Y  + 
Sbjct: 275 SMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKS 334

Query: 329 KLQPNL----------RLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGM 377
            L   L           L + LV MY KCG +  AR VFD M  + +V  W  ++  Y  
Sbjct: 335 GLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAK 394

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLS-----ACSHAGLLEEGRYYFKIMTEQYKL 432
            G+  ++++LF +M   G+ PD  A   +L      +C+  GL+  G Y  K+       
Sbjct: 395 VGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHG-YIVKLGFGAQCA 453

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           V        L+    ++  + +A  +  +MP + +   W S+++ C
Sbjct: 454 VCN-----ALISFYAKSNMIGDAVLVFNRMPRQ-DTISWNSVISGC 493


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 169/530 (31%), Positives = 290/530 (54%), Gaps = 34/530 (6%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           + T ++LHA  I N+   ++  +G  ++  Y     +VD R  F  + N  V   N ++ 
Sbjct: 253 LSTARQLHAHAIKNK-FSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMV 311

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
             V   L  +AL +++ M+  G   D  +   V  AC+     L GLQ+HC  +K G D 
Sbjct: 312 GLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDV 371

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           ++   N ++ +YGKC  L EA  V  +M  +D V+WN+++A   QN  +++ +    EM 
Sbjct: 372 DVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEML 431

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSV------------------------------- 252
              ++PD  T  S+L +          SV                               
Sbjct: 432 RYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMIT 491

Query: 253 --KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
             +++  ++  + LVSWN +I+ ++ N    EA   + +M   G++P+  + A+VL  C 
Sbjct: 492 EAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCA 551

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           +L+ + LG++IH  + ++++  +  + + LVDMYAKCG++ ++  +F++ +  D VSW +
Sbjct: 552 NLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNA 611

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           MI  Y + GQG++A+ +F +M  + + P+   FV+VL ACSH GLL++G  YF +MT +Y
Sbjct: 612 MICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRY 671

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
           KL P++EHFAC+VD+LGR+   +EA   I+ MP+E +  IW +L++ C +  ++++   A
Sbjct: 672 KLEPQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETA 731

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           A ++  L P+ S  Y+LLSN+YA++G+W DV R R+ M    +KK PG S
Sbjct: 732 ASNVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCS 781



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 190/402 (47%), Gaps = 33/402 (8%)

Query: 51  HAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYL 110
           HA+ + +   H +      ++  Y   G       +F  + + +VV +N L+  Y    +
Sbjct: 57  HARGVFDVMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGM 116

Query: 111 YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG 170
           + D++ +   M+  G  PD  T   +LKAC G   L +G+QIH   VK GL+ ++  G+ 
Sbjct: 117 FRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSA 176

Query: 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
           LV MYGKC  L++A R  + M  ++ V+W + +AG  QN ++   L++  +M+ L +   
Sbjct: 177 LVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVS 236

Query: 231 ADTMASLLPS--------------------------VTNTS-------PENVLSVKEMFL 257
               AS+  S                          V  T+        ++++  +  F 
Sbjct: 237 QPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFF 296

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
            L N  + + N M+       + AEA+ L+  M   GI  + +S++ V  AC ++   L 
Sbjct: 297 SLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQ 356

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           G ++H    +     ++ + NA++D+Y KC +L EA  VF +M  +D VSW ++I+A   
Sbjct: 357 GLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQ 416

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
           +    D +A  ++ML  G+ PD   + SVL AC+    LE G
Sbjct: 417 NECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYG 458



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 109/446 (24%), Positives = 195/446 (43%), Gaps = 35/446 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+    ++HA + +   L  +   G  L+  YG C  + D    F  +  +N V +   I
Sbjct: 151 DLALGVQIHA-VAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAI 209

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
              V N  Y   L ++  M   G       Y  V ++C+    L    Q+H   +K    
Sbjct: 210 AGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFS 269

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            +   G  +V +Y K   L +ARR    +P+  V   N+M+ G  + G   EAL + + M
Sbjct: 270 ADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFM 329

Query: 223 ESLRIKPDADTMASLLPSVTNTS------PENVLSVKE---------------------- 254
               I  D  +++ +  +             + L++K                       
Sbjct: 330 TRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKAL 389

Query: 255 -----MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                +F +++ ++ VSWN +IA    N    + +    +M  +G+EP+  +  SVL AC
Sbjct: 390 VEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKAC 449

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L +L  G  +H    +  L  +  + + +VDMY KCG +TEA+ + D++  Q++VSW 
Sbjct: 450 AGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWN 509

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           S+IS + ++ Q  +A   FS+ML  G+ PD   + +VL  C++   +E G+     + +Q
Sbjct: 510 SIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQ 569

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEA 455
             L       + LVD+  + G + ++
Sbjct: 570 EMLGDEYIS-STLVDMYAKCGNMPDS 594



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 130/284 (45%), Gaps = 37/284 (13%)

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDV 196
           L A +G ++L  G   H  ++  G     F  N L+ MY +CG    AR V + MP +D 
Sbjct: 11  LCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDT 70

Query: 197 VTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMF 256
           V+WN+M+  YA  G                   D    ASL                  F
Sbjct: 71  VSWNTMLTAYAHAG-------------------DTGAAASL------------------F 93

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
             + + ++VSWN +++ Y    M  ++V L ++M   G+ P+  ++A +L ACG L  L 
Sbjct: 94  GAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLA 153

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
           LG +IH    +  L+ ++R  +ALVDMY KC SL +A   F  M  ++ VSW + I+   
Sbjct: 154 LGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCV 213

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
            + Q    + LF +M   GL     A+ SV  +C+    L   R
Sbjct: 214 QNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTAR 257


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 182/559 (32%), Positives = 295/559 (52%), Gaps = 39/559 (6%)

Query: 32  DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
           DAC+        +K  K+ HAQ+I      S+  IG  L+  Y   G M   R VFD + 
Sbjct: 170 DACSSP----AGLKLGKEFHAQVI-KVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLY 224

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
            ++V  FNV+I  Y  +     A  ++  M   GF P+  ++  +L  CS   +L  G  
Sbjct: 225 KRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKA 284

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H   +  GL  ++     L+ MY  CG ++ ARRV + M  +DVV+W  M+ GYA+N  
Sbjct: 285 VHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSN 344

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN----------------------- 248
            ++A  +   M+   I+PD  T   ++ +  +++  +                       
Sbjct: 345 IEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTA 404

Query: 249 ----------VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                     +   +++F  +  +++VSW+ MI  Y  N    EA + +  M+ + +EP+
Sbjct: 405 LVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPD 464

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
            ++  ++L ACG L AL LG +I+    +  L  ++ + NAL++M  K GS+  AR +F+
Sbjct: 465 VVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFE 524

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
            M  +DVV+W  MI  Y + G   +A+ LF +ML     P+S+ FV VLSACS AG +EE
Sbjct: 525 NMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEE 584

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           GR +F  + +   +VP +E + C+VDLLGRAG+++EA  LI +MP++PN  IW +L+AAC
Sbjct: 585 GRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAAC 644

Query: 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
            +Y N+D+   AA+      P     YV LS++YA AG W +V +VRK M S+G++K  G
Sbjct: 645 RIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQG 704

Query: 539 AS-VEMNDQVQIIALPLRS 556
            + +E+  ++    +  RS
Sbjct: 705 CTWIEVEGKLHTFVVEDRS 723



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 149/507 (29%), Positives = 248/507 (48%), Gaps = 53/507 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L++ +  CG M++ R  FD + NK VV +N +I  Y       +A  +++ M     +P 
Sbjct: 102 LIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPS 161

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T+  VL ACS    L +G + H  V+KVG   +   G  LV+MY K G +  AR+V +
Sbjct: 162 IITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFD 221

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE-- 247
            +  +DV T+N M+ GYA++G  ++A  +   M+    KP+  +  S+L     ++PE  
Sbjct: 222 GLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGC--STPEAL 279

Query: 248 ---------------------------------NVLSVKEMFLKLDNKNLVSWNVMIAVY 274
                                            ++   + +F K+  +++VSW VMI  Y
Sbjct: 280 AWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGY 339

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           A NS   +A  L+  M+  GI+P+ I+   ++ AC   + L L R+IH  V R     +L
Sbjct: 340 AENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDL 399

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            ++ ALV MYAKCG++ +AR VFD M  +DVVSW++MI AY  +G G +A   F  M  +
Sbjct: 400 LVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRN 459

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK--LVPRIEHFACLVDLLGRAGKV 452
            + PD + ++++L+AC H G L+ G    +I T+  K  LV  I     L+++  + G +
Sbjct: 460 NVEPDVVTYINLLNACGHLGALDLG---MEIYTQAIKADLVSHIPVGNALINMNVKHGSI 516

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF--HLAPNQSGYYVLLSN 510
           E A  + + M ++ +   W  ++    L+ N    +   D +      PN     V    
Sbjct: 517 ERARYIFENM-VQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNS----VTFVG 571

Query: 511 IYAKAGRWGDVKRVRKF----MNSKGI 533
           + +   R G V+  R+F    ++ +GI
Sbjct: 572 VLSACSRAGFVEEGRRFFSYLLDGRGI 598



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 209/462 (45%), Gaps = 85/462 (18%)

Query: 113 DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV 172
           D LH     S H    D  TY  + + C       +G Q+   +++ G   N++  N L+
Sbjct: 47  DVLHRLGEGSNH---IDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLI 103

Query: 173 AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
            ++  CG + EAR+  + + +K VVTWN+++AGYAQ G   EA  + R+M    ++P   
Sbjct: 104 KLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSII 163

Query: 233 TMASLLPSVTNTSP--------ENVLSV-------------------------KEMFLKL 259
           T   +L + ++ +           V+ V                         +++F  L
Sbjct: 164 TFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGL 223

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
             +++ ++NVMI  YA +    +A  L+ +M+  G +PN IS  S+L  C    AL  G+
Sbjct: 224 YKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGK 283

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
            +H       L  ++R+  AL+ MY  CGS+  AR VFD+M+ +DVVSWT MI  Y  + 
Sbjct: 284 AVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENS 343

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA-------------------------- 413
              DA  LF+ M   G+ PD I ++ +++AC+ +                          
Sbjct: 344 NIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDT 403

Query: 414 ---------GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD---LIKQ 461
                    G +++ R  F  M+ +      +  ++ ++      G  EEA++   L+K+
Sbjct: 404 ALVHMYAKCGAIKDARQVFDAMSRR-----DVVSWSAMIGAYVENGCGEEAFETFHLMKR 458

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGI------LAADHIFHL 497
             +EP+   + +L+ AC     +D+G+      + AD + H+
Sbjct: 459 NNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHI 500


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 176/513 (34%), Positives = 284/513 (55%), Gaps = 40/513 (7%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +L +   I  +  +HAQ+I N H   +P +  +L+R+   C  +     +F    N NV 
Sbjct: 55  LLQRSKHINQVLPIHAQLIRNGH-SQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVY 113

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +  LI  +V++  Y+DA+ +Y  M      PD Y    +LKAC    +L  G ++H   
Sbjct: 114 LYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRA 173

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           +K+GL  N      ++ +YGKCG L +ARRV  +MP +DVV    M++ Y+  G  +EA 
Sbjct: 174 LKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMP-EDVVASTVMISSYSDQGLVEEAG 232

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
            V                                     F ++  K+ V W  MI  +  
Sbjct: 233 AV-------------------------------------FSRVRRKDTVCWTAMIDGFVR 255

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N     A++ +  M+   + PN  ++  VL AC  L AL +GR +H Y+ + +++ NL +
Sbjct: 256 NEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFV 315

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            NAL++MY++CGS+ EA+TVFD+M+ +DV+++ +MIS   M+G+   A+ LF  M+   L
Sbjct: 316 GNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRL 375

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P ++ FV VL+ACSH GL++ G   F  MT  Y + P+IEH+ C+VDLLGR G++EEAY
Sbjct: 376 RPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAY 435

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           DLI+ M M P+  + G+L++AC ++ N+++G   A  +       SG YVLLS++YA +G
Sbjct: 436 DLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSG 495

Query: 517 RWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           +W +  +VR  M   G++K PG +S+E+N+++ 
Sbjct: 496 KWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIH 528


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 181/510 (35%), Positives = 291/510 (57%), Gaps = 43/510 (8%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSI-GLKLMRTYGACGQMVDTRHVFDE-ITNKNVVFFNVL 101
           ++ L ++ AQII +     +P+I  +K +    + G +  +  +F+  ++  N+  +N L
Sbjct: 37  MRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNAL 96

Query: 102 IRSYVNNYLYYDALHVYKNMSV--HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
           ++++  +  ++  +  + N  V  +  +PD YT+  VLKAC+G   +L G ++HC V K 
Sbjct: 97  LKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKY 156

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G + NLF  N LV +Y K GC   A+++ ++M  +DVV+WN++++GY  +G  D+A    
Sbjct: 157 GCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKA---- 212

Query: 220 REMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSM 279
                                            + +F  +  KNLVSW+ MI+ YA N  
Sbjct: 213 ---------------------------------RMVFDGMMEKNLVSWSTMISGYARNEK 239

Query: 280 PAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
            A+A++L+ QM+  G + PN +++ SVL AC  L AL LG+ IHR++ R K++  L L N
Sbjct: 240 YADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGN 299

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           AL DMYAKCG + EA+ VF +M  +DV+SW+ +I    M G   +A   F++M+  GL P
Sbjct: 300 ALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEP 359

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           + I+F+ +L+AC+HAGL+++G  YF +M + Y + P+IEH+ C+VDLL RAG++++A  L
Sbjct: 360 NDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESL 419

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
           I  MPM+PN  +WG+L+  C +Y + + G      I  L  N SG  V L+N+YA  GR 
Sbjct: 420 INSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRL 479

Query: 519 GDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
            D    R  M      K PG S +E+N+ V
Sbjct: 480 DDAASCRLRMRDNKSMKTPGCSWIEINNSV 509


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 183/482 (37%), Positives = 267/482 (55%), Gaps = 26/482 (5%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VF +I   N    N +++ Y  +     AL  Y  M   G   D YTYP VLKAC     
Sbjct: 66  VFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCG 125

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           LL G  +    VK G   ++F  NGL++MY +CG    AR V +    KD+V+WNSM+ G
Sbjct: 126 LLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGG 185

Query: 206 YAQNGRFDEALDVCREM--------------------ESLRIKPDADTMASLLPSVTNTS 245
           Y   G  + A ++  EM                    E  R +   D+M +      N+ 
Sbjct: 186 YVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSM 245

Query: 246 PENVLSVKEM------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
            +    V EM      F K+  KN++SW++MI  YA +    EA++L+ QM   GI+P+ 
Sbjct: 246 IDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDR 305

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           +SV   + AC  L AL  GR IH Y++R ++  ++ ++ ALVDMY KCGS  EAR +F+ 
Sbjct: 306 VSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNS 365

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
           M  ++VVSW  MI   GM+G G +A+  F +M M  +  D + F+ VL ACSHA L+ EG
Sbjct: 366 MPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGVLMACSHANLVTEG 425

Query: 420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
            + F  M   Y+L P++EH+ CLVDLLGRAG++++  ++I+ MPM+PN  +WGSL+ AC 
Sbjct: 426 LHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACR 485

Query: 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA 539
           ++ N+ +  +  + +  L  + SG YVL+SNIYA  G W  + R+RK M  + +KK  G 
Sbjct: 486 IHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGR 545

Query: 540 SV 541
           SV
Sbjct: 546 SV 547



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 83/157 (52%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y   G+M   R +FB++  KNV+ ++++I  Y  +    +AL++++ M   G  PD  + 
Sbjct: 249 YAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSV 308

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
              + ACS   +L  G  IH  + +  +  ++     LV MY KCG   EAR + N MP 
Sbjct: 309 VGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPE 368

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
           ++VV+WN M+ G   NG   EAL+   +ME  RI  D
Sbjct: 369 RNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMD 405



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 144/342 (42%), Gaps = 77/342 (22%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y  CG+M + +++FDE+  ++VV ++++I  Y       +   V+       FD  
Sbjct: 182 MLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVF-------FD-- 232

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             + P                             +L + N ++  Y K G ++ AR + B
Sbjct: 233 --SMPT---------------------------RDLVSWNSMIDGYAKVGEMEVAREIFB 263

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS------------- 236
            M  K+V++W+ M+ GYA +    EAL++ R+M    IKPD  ++               
Sbjct: 264 KMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQ 323

Query: 237 -------------LLPSVTNTSPENVL-------SVKEMFLKLDNKNLVSWNVMIAVYAN 276
                        LL  V  T+  ++          + +F  +  +N+VSWNVMI     
Sbjct: 324 GRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGM 383

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK---KLQPN 333
           N    EA++ + QME+  I  + +    VL AC    A L+   +H + + K   +L+P 
Sbjct: 384 NGFGKEALECFXQMEMERIPMDDLLFLGVLMACS--HANLVTEGLHIFNQMKGVYRLEPK 441

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
           L     LVD+  + G L + + +   M  + +   W S++ A
Sbjct: 442 LEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLA 483



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 113/247 (45%), Gaps = 12/247 (4%)

Query: 231 ADTMAS--LLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
           +DT A+  LL SV + +  NV   + +F ++   N    N M+  Y  +S P  A+  Y 
Sbjct: 41  SDTFAASRLLDSVVSKTL-NVNYAELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYA 99

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           +M   G+  +  +   VL ACG +  LL G  +     ++    ++ + N L+ MY +CG
Sbjct: 100 EMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCG 159

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
               AR VFD    +D+VSW SM+  Y   G+  +A  +F +M    +   SI    +  
Sbjct: 160 ETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIM---IDG 216

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
                G +   R +F  M  +      +  +  ++D   + G++E A ++  +M ++ N 
Sbjct: 217 YGKKMGEVNRARVFFDSMPTR-----DLVSWNSMIDGYAKVGEMEVAREIFBKM-LQKNV 270

Query: 469 RIWGSLV 475
             W  ++
Sbjct: 271 ISWSIMI 277


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 183/513 (35%), Positives = 287/513 (55%), Gaps = 49/513 (9%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G +     VFDE+  +++V +N ++  Y  +     +L  +K M   G   D
Sbjct: 165 LIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKAD 224

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +     L ACS  + L  G++IHC V++  L+ ++     L+ MYGKCG +  A RV N
Sbjct: 225 RFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFN 284

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE-- 247
            + SK++V WN+M+ G  ++ +               + PD  TM +LLPS + +     
Sbjct: 285 RIYSKNIVAWNAMIGGMQEDDK---------------VIPDVITMINLLPSCSQSGALLE 329

Query: 248 ----NVLSVKEMFL---------------------------KLDNKNLVSWNVMIAVYAN 276
               +  ++++MFL                           +++ KN+VSWN M+A Y  
Sbjct: 330 GKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQ 389

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N    EA+ ++  +    ++P+AI++ASVLPA  +L++   G++IH Y+ +  L  N  +
Sbjct: 390 NEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFI 449

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            NA+V MYAKCG L  AR  FD M C+DVVSW +MI AY + G G  ++  FS+M   G 
Sbjct: 450 SNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGF 509

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P+   FVS+L+ACS +GL++EG  +F  M  +Y + P IEH+ C++DLLGR G ++EA 
Sbjct: 510 KPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAK 569

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
             I++MP+ P  RIWGSL+AA   ++++ +  LAA HI  L  + +G YVLLSN+YA+AG
Sbjct: 570 CFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEAG 629

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           RW DV R++  M  +G+ K  G S V++N + +
Sbjct: 630 RWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSE 662



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/376 (32%), Positives = 193/376 (51%), Gaps = 48/376 (12%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G M +   +F+++ + +   +NV+IR Y NN L+ +A+  Y  M   G   D +T+P V+
Sbjct: 72  GLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVI 131

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
           KAC    +L+VG ++H  ++K+G D +++  N L+ MY K G ++ A +V ++MP +D+V
Sbjct: 132 KACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLV 191

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS----------------V 241
           +WNSMV+GY  +G    +L   +EM  L  K D   M S L +                V
Sbjct: 192 SWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQV 251

Query: 242 TNTSPE-----------------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAV 284
             +  E                  V   + +F ++ +KN+V+WN MI             
Sbjct: 252 IRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGG----------- 300

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMY 344
                 E   + P+ I++ ++LP+C    ALL G+ IH +  RK   P L LE ALVDMY
Sbjct: 301 ----MQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMY 356

Query: 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404
            KCG L  A  VF+QM  +++VSW +M++AY  + Q  +A+ +F  +L   L PD+I   
Sbjct: 357 GKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIA 416

Query: 405 SVLSACSHAGLLEEGR 420
           SVL A +      EG+
Sbjct: 417 SVLPAVAELASRSEGK 432



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 174/367 (47%), Gaps = 53/367 (14%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +++  ++H Q+I ++ L  +  +   L+  YG CG++     VF+ I +KN+V +N +I 
Sbjct: 241 LRSGMEIHCQVIRSE-LELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIG 299

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH-CSVVKVGLD 162
               +                   PD  T   +L +CS S +LL G  IH  ++ K+ L 
Sbjct: 300 GMQED---------------DKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLP 344

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
           Y L     LV MYGKCG LK A  V N M  K++V+WN+MVA Y QN ++ EAL + + +
Sbjct: 345 Y-LVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHI 403

Query: 223 ESLRIKPDADTMASLLPSV----------------------TNTSPENVL---------- 250
            +  +KPDA T+AS+LP+V                      +NT   N +          
Sbjct: 404 LNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDL 463

Query: 251 -SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            + +E F  +  K++VSWN MI  YA +     ++  + +M   G +PN  +  S+L AC
Sbjct: 464 QTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTAC 523

Query: 310 GDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS- 367
                +  G      ++ +  + P +     ++D+  + G+L EA+   ++M        
Sbjct: 524 SISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARI 583

Query: 368 WTSMISA 374
           W S+++A
Sbjct: 584 WGSLLAA 590



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           +MF K+++ +   WNV+I  Y NN +  EA+D Y +ME  GI  +  +   V+ ACG+L 
Sbjct: 79  DMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELL 138

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           AL++G+K+H  + +     ++ + N L+DMY K G +  A  VFD+M  +D+VSW SM+S
Sbjct: 139 ALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVS 198

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-RYYFKIMTEQYKL 432
            Y + G G  ++  F +ML  G   D    +S L ACS    L  G   + +++  + +L
Sbjct: 199 GYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELEL 258

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
              ++    L+D+ G+ GKV+ A  +  ++    N   W +++  
Sbjct: 259 DIMVQ--TSLIDMYGKCGKVDYAERVFNRI-YSKNIVAWNAMIGG 300


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 168/460 (36%), Positives = 260/460 (56%), Gaps = 39/460 (8%)

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
           N  +V +N +I  YVN   Y +AL + + M   G + D +TYP V++AC+ +  L +G Q
Sbjct: 248 NMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQ 307

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H  V++   D++    N LV++Y KCG   EAR +   MP+KD+V+WN++++GY  +G 
Sbjct: 308 VHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGH 366

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
             EA                                     K +F ++  KN++SW +MI
Sbjct: 367 IGEA-------------------------------------KLIFKEMKEKNILSWMIMI 389

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           +  A N    E + L+  M+  G EP   + +  + +C  L A   G++ H  + +    
Sbjct: 390 SGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFD 449

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            +L   NAL+ MYAKCG + EAR VF  M C D VSW ++I+A G  G G +AV ++ +M
Sbjct: 450 SSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEM 509

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
           L  G+ PD I  ++VL+ACSHAGL+++GR YF  M   Y++ P  +H+A L+DLL R+GK
Sbjct: 510 LKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGK 569

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
             +A  +I+ +P +P   IW +L++ C ++ NM++GI+AAD +F L P   G Y+LLSN+
Sbjct: 570 FSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNM 629

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           +A  G+W +V RVRK M  +G+KK    S +EM  QV   
Sbjct: 630 HAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTF 669



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 200/452 (44%), Gaps = 82/452 (18%)

Query: 69  KLMRT-----YGACGQMVDTRHVFDE--ITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           K+ RT     Y A G +   R VF++  +  ++ V +N +I  + +N   Y A++++  M
Sbjct: 80  KIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKM 139

Query: 122 SVHGFDPDCYTYPCVLKACS-GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
              GF PD +T+  VL   +  ++     +Q H + +K G  Y     N LV++Y KC  
Sbjct: 140 KHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCAS 199

Query: 181 ----LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS 236
               L  AR+V +++  KD  +W +M+ GY +NG FD   ++   M+             
Sbjct: 200 SPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMD------------- 246

Query: 237 LLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE 296
                                  DN  LV++N MI+ Y N     EA+++  +M   GIE
Sbjct: 247 -----------------------DNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIE 283

Query: 297 PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTV 356
            +  +  SV+ AC     L LG+++H YV R++   +   +N+LV +Y KCG   EAR +
Sbjct: 284 LDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAI 342

Query: 357 FDQMRCQDVVSWTSMISAYGMSGQ-------------------------------GYDAV 385
           F++M  +D+VSW +++S Y  SG                                G + +
Sbjct: 343 FEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGL 402

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
            LFS M   G  P   AF   + +C+  G    G+ Y   +  +      +     L+ +
Sbjct: 403 KLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLL-KIGFDSSLSAGNALITM 461

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             + G VEEA  + + MP   +   W +L+AA
Sbjct: 462 YAKCGVVEEARQVFRTMPC-LDSVSWNALIAA 492



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 155/365 (42%), Gaps = 90/365 (24%)

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
            SL +   +H +++  G        N L+ +Y K   L  AR++ +++   D +   +MV
Sbjct: 28  TSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMV 87

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKN 263
           +GY  +G      D+                 +L   V   +P  +            ++
Sbjct: 88  SGYCASG------DI-----------------TLARGVFEKAPVCM------------RD 112

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK--- 320
            V +N MI  +++N+    A++L+ +M+  G +P+  + ASVL     L+ +    K   
Sbjct: 113 TVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAG---LALVADDEKQCV 169

Query: 321 -IHRYVERKKLQPNLRLENALVDMYAKCGS----LTEARTVFDQMRCQDVVSWTSMISAY 375
             H    +        + NALV +Y+KC S    L  AR VFD++  +D  SWT+M++ Y
Sbjct: 170 QFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGY 229

Query: 376 GMSG-------------------------QGY-------DAVALFSKMLMSGLCPDSIAF 403
             +G                          GY       +A+ +  +M+ SG+  D   +
Sbjct: 230 VKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTY 289

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA-----CLVDLLGRAGKVEEAYDL 458
            SV+ AC+ AGLL+ G+       + +  V R E F+      LV L  + GK +EA  +
Sbjct: 290 PSVIRACATAGLLQLGK-------QVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAI 342

Query: 459 IKQMP 463
            ++MP
Sbjct: 343 FEKMP 347



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 86/220 (39%), Gaps = 54/220 (24%)

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
           ++L L R +H  +     QP   + N L+D+Y K   L  AR +FD++   D ++ T+M+
Sbjct: 28  TSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMV 87

Query: 373 SAYGMSGQ---------------------------------GYDAVALFSKMLMSGLCPD 399
           S Y  SG                                  GY A+ LF KM   G  PD
Sbjct: 88  SGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPD 147

Query: 400 SIAFVSVLSACS------------HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           +  F SVL+  +            HA  L+ G  Y  I +    LV      A    LL 
Sbjct: 148 NFTFASVLAGLALVADDEKQCVQFHAAALKSGAGY--ITSVSNALVSVYSKCASSPSLLH 205

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
            A KV   +D I    +E +ER W +++         D+G
Sbjct: 206 SARKV---FDEI----LEKDERSWTTMMTGYVKNGYFDLG 238



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 112/257 (43%), Gaps = 21/257 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++ HAQ++      S+ S G  L+  Y  CG + + R VF  +   + V +N LI +   
Sbjct: 437 QQYHAQLL-KIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQ 495

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +    +A+ VY+ M   G  PD  T   VL ACS +  +  G +   S+  V   Y +  
Sbjct: 496 HGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETV---YRIPP 552

Query: 168 GNG----LVAMYGKCGCLKEARRVLNDMPSKDVVT-WNSMVAGYAQNGRFDEALDVCREM 222
           G      L+ +  + G   +A  V+  +P K     W ++++G   +G  +  L +    
Sbjct: 553 GADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNME--LGIIAAD 610

Query: 223 ESLRIKPDADTMASLLPSVTNTSP--ENVLSVKEMFLKLDNKNLV--SW-----NVMIAV 273
           +   + P+ D    LL ++   +   E V  V+++      K  V  SW      V   +
Sbjct: 611 KLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFL 670

Query: 274 YANNSMP-AEAVDLYLQ 289
             + S P AEAV +YLQ
Sbjct: 671 VDDTSHPEAEAVYIYLQ 687


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 186/570 (32%), Positives = 304/570 (53%), Gaps = 83/570 (14%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LHAQ++  Q         L  +  Y     + D+  +F+ I     + +  +IR Y +
Sbjct: 26  QQLHAQVLKFQASSLCNLSLLLSI--YSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTS 83

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           + L + +L  +  M   G  PD   +P VLK+C+    L +G  +H  +++VGLD++L+ 
Sbjct: 84  HGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYT 143

Query: 168 GNGLVAMYGKCGCLKEA--------------------------------RRVLNDMPSKD 195
           GN L+ MY K   L+E+                                R++   MP KD
Sbjct: 144 GNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKD 203

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV------ 249
           +V+WN+++AG A+NG ++E L + REM    +KPD+ T++S+LP +     ENV      
Sbjct: 204 LVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIA----ENVDISRGK 259

Query: 250 ----LSVKE---------------------------MFLKLDNKNLVSWNVMIAVYANNS 278
                S+++                           +F  L  ++ +SWN +IA    N 
Sbjct: 260 EIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNG 319

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
           +  E +  + QM +  I+P + S +S++PAC  L+ L LG+++H Y+ R     N+ + +
Sbjct: 320 LFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIAS 379

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           +LVDMYAKCG++  A+ +FD+MR +D+VSWT+MI    + GQ  DA+ LF +M   G+  
Sbjct: 380 SLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGI-- 437

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
                 +VL+ACSH GL++E   YF  MT  + + P +EH+A + DLLGRAG++EEAYD 
Sbjct: 438 -----KAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDF 492

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
           I  M + P   IW +L++AC ++ N+D+    A+ I  + PN +G Y+LL+NIY+ A RW
Sbjct: 493 ICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRW 552

Query: 519 GDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
            +  + R  M   GI+K P  S +E+ ++V
Sbjct: 553 KEAAKWRASMRRIGIRKTPACSWIEVKNKV 582



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 105/186 (56%), Gaps = 1/186 (0%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           DI   K++H    I Q L ++  +   L+  Y  C ++ D+  VF  +T ++ + +N +I
Sbjct: 254 DISRGKEIHG-CSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSII 312

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
              V N L+ + L  ++ M +    P  Y++  ++ AC+   +L +G Q+H  + + G D
Sbjct: 313 AGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 372

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            N+F  + LV MY KCG ++ A+++ + M  +D+V+W +M+ G A +G+  +A+++  +M
Sbjct: 373 ENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQM 432

Query: 223 ESLRIK 228
           E+  IK
Sbjct: 433 ETEGIK 438


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 201/647 (31%), Positives = 319/647 (49%), Gaps = 140/647 (21%)

Query: 44  IKTLKKLHAQIIINQHLH--SNPSIGLKLMR----------------------------- 72
           ++TL+ LHA+++    LH  S+P + L+L+                              
Sbjct: 38  LRTLRCLHARLLTAALLHDPSHPHLTLRLLHLYTLSPDLATPAVLFRADPGPVAATSLVS 97

Query: 73  TYGACGQMVDTRHVFDEI--TNKNVVFFNVLIRSYVNNYLYYDALHVYKNM--SVHGFDP 128
            Y   G++ D+   FD +    ++ V  N +I ++    L   A+ V++++  S     P
Sbjct: 98  AYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRP 157

Query: 129 DCYTYPCVLKACSGSNSLLVG--LQIHCSVVKVGLDYNLFNGNGLVAMYGKC---GCLKE 183
           D Y++  +L A    + L V    Q+HC+V K+G    L   N L+A+Y KC   G  ++
Sbjct: 158 DDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRD 217

Query: 184 ARRVLNDMPSKDVVT-------------------------------WNSMVAGYAQNGRF 212
           AR+VL++MP KD +T                               WN+M++GY Q+G  
Sbjct: 218 ARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMC 277

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTS--------------------PENVLSV 252
            EA ++ R M S RI PD  T  SLL +  N                      PE  L V
Sbjct: 278 AEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPV 337

Query: 253 K-----------------EMFLKLDNKNLVSWN--------------------------- 268
                             ++F  +  K++VSWN                           
Sbjct: 338 NNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSE 397

Query: 269 ----VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
               VM++ Y +  +  +A+ L+ QM    ++P   + A  + ACG+L AL  G+++H +
Sbjct: 398 LSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAH 457

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
           + +   + +    NAL+ MYA+CG++ +AR VF  M   D VSW +MISA G  G G +A
Sbjct: 458 LVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREA 517

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           + LF +M+  G+ PD I+F+++L+AC+HAGL+++G  YF+ M   + + P  +H+A L+D
Sbjct: 518 LELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLID 577

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY 504
           LLGRAG++ EA DLIK MP EP   IW ++++ C +  +M++G  AAD +F + P   G 
Sbjct: 578 LLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGT 637

Query: 505 YVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           Y+LLSN Y+ AGRW D  RVRK M  +G+KK PG S +E+ ++V + 
Sbjct: 638 YILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVF 684


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 177/527 (33%), Positives = 292/527 (55%), Gaps = 35/527 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +KLH QI+      S    GL  M  Y  C ++ D+R VFDEI ++NVV +  +I  YV 
Sbjct: 158 RKLHCQIVKVGSPDSFVLTGLVDM--YAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQ 215

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    + L ++  M     + + YT   ++ AC+   +L  G  +H  V+K G D N F 
Sbjct: 216 NDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFL 275

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L+ +Y KCG +++A  V +++ + D+V+W +M+ GYAQ G   EAL +  +     +
Sbjct: 276 VTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDL 335

Query: 228 KPDADTMASLLPSVTNTSP---------------------ENVL-----------SVKEM 255
            P+  T +S+L +   T                       EN L             + +
Sbjct: 336 LPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYV 395

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F  + +K++++WN +I+ Y  N    EA++L+ QM    + P+AI++ SVL AC  + A 
Sbjct: 396 FETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAY 455

Query: 316 LLGRKIHRY-VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
            +G  +H Y ++   L  ++ +  AL++ YAKCG    AR +FD+M  ++ ++W++MI  
Sbjct: 456 RVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGG 515

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
           YG+ G    ++ LF  ML   L P+ + F ++LSACSH+G+L EG  YF  M + Y  VP
Sbjct: 516 YGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVP 575

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
            ++H+AC+VDLL RAG++EEA D I+++P++P+  + G+ +  C L+S  D+G +A   +
Sbjct: 576 SMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRM 635

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
             L P+++ YYVL+SN+YA  GRW    +V + M  +G+ K+PG S+
Sbjct: 636 LELHPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSL 682



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 167/603 (27%), Positives = 272/603 (45%), Gaps = 97/603 (16%)

Query: 1   MKAVVLLCRHFS----------TTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKL 50
           MK + LL RH             T  +   + S Q   +S + C  +L     + +L+K+
Sbjct: 1   MKRISLLHRHLQWRNLTVTALQRTPEIDRTIASIQS--ISSNPCFSLLGICKTVSSLRKI 58

Query: 51  HAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYL 110
           HA ++++  L  +     KL+  YG+ G +   R +FD I N ++  + V+IR Y  N  
Sbjct: 59  HALLVVHG-LSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDS 117

Query: 111 YYDALHVYKNMSVHGFDP-DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
           Y + +  Y        +  D   +  VLKACS       G ++HC +VKVG   + F   
Sbjct: 118 YSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVG-SPDSFVLT 176

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
           GLV MY KC  ++++RRV +++  ++VV W SM+ GY QN    E L +   M    ++ 
Sbjct: 177 GLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEG 236

Query: 230 DADTMASLLPSVTN-------------------------TSP--------ENVLSVKEMF 256
           +  T+ SL+ + T                           +P         ++     +F
Sbjct: 237 NQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVF 296

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
            +L   +LVSW  MI  YA    P EA+ L+       + PN ++ +SVL AC    +L 
Sbjct: 297 DELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLN 356

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
           +GR +H  +  K    +   ENALVDMYAKC  + +AR VF+ +  +DV++W S+IS Y 
Sbjct: 357 MGRSVH-CLGIKLGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYT 415

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS----------------HAGLL---- 416
            +G  Y+A+ LF +M    + PD+I  VSVLSAC+                 AGLL    
Sbjct: 416 QNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSV 475

Query: 417 ----------------EEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
                           E  R  F  M E+  +      ++ ++   G  G    + +L  
Sbjct: 476 YVGTALLNFYAKCGDAESARVIFDEMGEKNTIT-----WSAMIGGYGIQGDCSRSLELFG 530

Query: 461 QM---PMEPNERIWGSLVAACCLYSNMDIGILAAD---HIFHLAPNQSGYYVLLSNIYAK 514
            M    +EPNE I+ ++++AC     +  G    +    +++  P+   +Y  + ++ A+
Sbjct: 531 DMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMK-HYACMVDLLAR 589

Query: 515 AGR 517
           AGR
Sbjct: 590 AGR 592


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/460 (37%), Positives = 269/460 (58%), Gaps = 37/460 (8%)

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            +P+   Y  +L  C+    L  G  IH  +     + +L   N ++ MY KCG L+EA+
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            + + MP+KD+V+W  +++GY+Q+G+  EAL +  +M  L  +P+  T++SLL + + T 
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA-SGTG 219

Query: 246 PEN----------------------------------VLSVKEMFLKLDNKNLVSWNVMI 271
           P +                                  +   K +F  L  KN+VSWN +I
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALI 279

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           A +A        + L+LQM   G EP   + +SV  AC    +L  G+ +H +V +   Q
Sbjct: 280 AGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQ 339

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
           P   + N L+DMYAK GS+ +A+ VF ++  QD+VSW S+IS Y   G G +A+ LF +M
Sbjct: 340 PIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQM 399

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
           L + + P+ I F+SVL+ACSH+GLL+EG+YYF++M +++K+  ++ H   +VDLLGRAG+
Sbjct: 400 LKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGR 458

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
           + EA   I++MP++P   +WG+L+ +C ++ NMD+G+ AA+ IF L P+ SG +VLLSNI
Sbjct: 459 LNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNI 518

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           YA AGR  D  +VRK M   G+KK P  S VE+ ++V + 
Sbjct: 519 YASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVF 558



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 167/339 (49%), Gaps = 34/339 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y  CG + + + +FD++  K++V + VLI  Y  +    +AL ++  M   GF P+
Sbjct: 146 ILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPN 205

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +T   +LKA     S   G Q+H   +K G D N+  G+ L+ MY +   ++EA+ + N
Sbjct: 206 EFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFN 265

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
            + +K+VV+WN+++AG+A+ G  +  + +  +M     +P   T +S+  +         
Sbjct: 266 SLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQ 325

Query: 241 ------------------VTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                             + NT         ++   K++F +L  +++VSWN +I+ YA 
Sbjct: 326 GKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQ 385

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           + + AEA+ L+ QM    ++PN I+  SVL AC     L  G+     +++ K++  +  
Sbjct: 386 HGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAH 445

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTSMISA 374
              +VD+  + G L EA    ++M  +   + W +++ +
Sbjct: 446 HVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGS 484



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 149/305 (48%), Gaps = 14/305 (4%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           N  +G  L+  Y     M + + +F+ +  KNVV +N LI  +         + ++  M 
Sbjct: 240 NVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQML 299

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
             GF+P  +TY  V  AC+ S SL  G  +H  V+K G     + GN L+ MY K G +K
Sbjct: 300 RQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIK 359

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
           +A++V   +  +D+V+WNS+++GYAQ+G   EAL +  +M   +++P+  T  S+L   T
Sbjct: 360 DAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVL---T 416

Query: 243 NTSPENVLSVKEMFLKLDNKNLVSWNV-----MIAVYANNSMPAEAVDLYLQMEVHGIEP 297
             S   +L   + + +L  K+ +   V     ++ +        EA     +M    I+P
Sbjct: 417 ACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMP---IKP 473

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV-DMYAKCGSLTEARTV 356
            A    ++L +C     + LG  ++   +  +L P+    + L+ ++YA  G L++A  V
Sbjct: 474 TAAVWGALLGSCRMHKNMDLG--VYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKV 531

Query: 357 FDQMR 361
              M+
Sbjct: 532 RKMMK 536


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 180/520 (34%), Positives = 289/520 (55%), Gaps = 50/520 (9%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           ++D       L ++HA ++  + LH +P +  KL R+Y + G +  +  +F    N NV 
Sbjct: 29  LIDNSKSTHHLLQIHAALL-RRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVF 87

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +  +I ++ +  L++ AL  Y  M  H   P+ +T   +LKAC+    L     +H   
Sbjct: 88  LWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHA 143

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           +K GL  +L+   GLV  Y + G +  A+++ + MP + +V++ +M+  YA++G   EA 
Sbjct: 144 IKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEA- 202

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                               + +F  +  K++V WNVMI  YA 
Sbjct: 203 ------------------------------------RVLFEGMGMKDVVCWNVMIDGYAQ 226

Query: 277 NSMPAEAVDLYLQMEVHG-------IEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           +  P EA+  + +M +         + PN I+V +VL +CG + AL  G+ +H YVE   
Sbjct: 227 HGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNG 286

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           ++ N+R+  ALVDMY KCGSL +AR VFD M  +DVV+W SMI  YG+ G   +A+ LF 
Sbjct: 287 IKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFH 346

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           +M   G+ P  I FV+VL+AC+HAGL+ +G   F  M + Y + P++EH+ C+V+LLGRA
Sbjct: 347 EMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRA 406

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G+++EAYDL++ M +EP+  +WG+L+ AC ++SN+ +G   A+ +       SG YVLLS
Sbjct: 407 GRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLS 466

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           N+YA A  W  V +VR  M   G++K PG +S+E+ ++V 
Sbjct: 467 NMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVH 506


>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 177/497 (35%), Positives = 285/497 (57%), Gaps = 7/497 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+ HA  I+N  L  +  +G  ++  Y   G + D   VF  +  K+VV +N+LI SYV 
Sbjct: 303 KQGHAIAILNS-LDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQ 361

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           ++    AL++   M       D  T   +L A + ++++ +G + HC  ++  L+ ++  
Sbjct: 362 HHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVV 421

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N ++ MY KC  + +AR+V +    +D+V WN+++A YAQ G   EAL +  +M+   +
Sbjct: 422 ANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSV 481

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN----KNLVSWNVMIAVYANNSMPAEA 283
            P+  +  S++         N    K+MF ++ +     NL++W  +I+  A +    EA
Sbjct: 482 PPNVISWNSVILGFLRNGQVN--EAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEA 539

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
           +  + +M+  GI P+  S+ SVL AC D+ +L  GR IH ++ R +   ++ +  +LVDM
Sbjct: 540 ILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDM 599

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
           YAKCGS+ EA+ VF  M  +++  + +MISAY + GQ  +A+ALF  +   G+ PDSI F
Sbjct: 600 YAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITF 659

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
            S+LSACSHAGL+ EG   F  M  ++ + P +EH+ C+V LL R G ++EA  LI  MP
Sbjct: 660 TSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMP 719

Query: 464 MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKR 523
            +P+  I GSL+ AC  +  +++G   + H+F L P+ SG YV LSN YA AGRW +V  
Sbjct: 720 FQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSN 779

Query: 524 VRKFMNSKGIKKMPGAS 540
           +R  M  +G++K PG S
Sbjct: 780 MRDLMKVRGLRKNPGCS 796



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 148/530 (27%), Positives = 258/530 (48%), Gaps = 47/530 (8%)

Query: 44  IKTLKKLHAQIIINQHLHS-NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           + T +++HA+I+ N    + N  +  KL+  Y  C        +F  +  +NV  +  ++
Sbjct: 95  LHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIV 154

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
                     DAL  +  M  +G  PD +  P VLKAC     + +G  +H  V+K+G  
Sbjct: 155 GLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFG 214

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
             +F  + LV MYGKCG L++AR+V + M  K+VVTWNSM+ GY QNG   EA+DV  +M
Sbjct: 215 ACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDM 274

Query: 223 ESLRIKPDADTMASLLPSVTNTSP------------------ENVLS------------- 251
               I+P   T+AS L +  N                     +N+L              
Sbjct: 275 RVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLI 334

Query: 252 --VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
              + +F ++  K++V+WN++I+ Y  +    +A+++   M    +  ++++++S+L A 
Sbjct: 335 EDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSAS 394

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
              S + LG++ H Y  R+ L+ ++ + N+++DMYAKC  + +AR VFD    +D+V W 
Sbjct: 395 AVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWN 454

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           ++++AY   G   +A+ LF +M    + P+ I++ SV+      G + E +  F  M + 
Sbjct: 455 TLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQM-QS 513

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP---MEPNERIWGSLVAACC----LYS 482
               P +  +  L+  L ++G   EA    ++M    + P+     S++ AC     L+ 
Sbjct: 514 LGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWY 573

Query: 483 NMDIGILAADHIFHLA-PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531
              I      H F L+ P  +     L ++YAK G   + K+V   M+SK
Sbjct: 574 GRAIHGFITRHEFCLSVPVATS----LVDMYAKCGSIDEAKKVFHMMSSK 619



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 209/449 (46%), Gaps = 74/449 (16%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  YG CG + D R VFD +  KNVV +N +I  YV N L  +A+ V+ +M V G +P 
Sbjct: 223 LVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPT 282

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T    L A +  ++L+ G Q H   +   LD +   G+ ++  Y K G +++A  V +
Sbjct: 283 RVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFS 342

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP--- 246
            M  KDVVTWN +++ Y Q+ +  +AL++C  M S  ++ D+ T++S+L +   TS    
Sbjct: 343 RMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKL 402

Query: 247 ------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                         E +   +++F     ++LV WN ++A YA 
Sbjct: 403 GKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQ 462

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
             +  EA+ L+ QM+   + PN IS  SV          +LG                  
Sbjct: 463 VGLSGEALKLFYQMQFDSVPPNVISWNSV----------ILG------------------ 494

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRC----QDVVSWTSMISAYGMSGQGYDAVALFSKML 392
                  + + G + EA+ +F QM+      ++++WT++IS    SG GY+A+  F KM 
Sbjct: 495 -------FLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQ 547

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
            +G+ P   +  SVL AC+    L  GR     +T +++    +     LVD+  + G +
Sbjct: 548 EAGIRPSIASITSVLLACTDIPSLWYGRAIHGFIT-RHEFCLSVPVATSLVDMYAKCGSI 606

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLY 481
           +EA  +   M       I+ ++++A  L+
Sbjct: 607 DEAKKVFHMMS-SKELPIYNAMISAYALH 634



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 151/312 (48%), Gaps = 20/312 (6%)

Query: 177 KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS 236
           K G L+E+  +L++M  +D      +     Q   ++ AL   +++ + RI  + D  A 
Sbjct: 56  KDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHA-RILKNGDFFAK 114

Query: 237 LLPSVTNTSPENVLSV-----------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285
                 N   E  L V             +F +L  +N+ SW  ++ +        +A+ 
Sbjct: 115 ------NEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALL 168

Query: 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
            +++M+ +G+ P+   + +VL ACG L  + LG+ +H YV +      + + ++LVDMY 
Sbjct: 169 GFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYG 228

Query: 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
           KCG L +AR VFD M  ++VV+W SMI  Y  +G   +A+ +F  M + G+ P  +   S
Sbjct: 229 KCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVAS 288

Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME 465
            LSA ++   L EG+    I       +  I   + +++   + G +E+A +L+    +E
Sbjct: 289 FLSASANLDALIEGKQGHAIAILNSLDLDNILG-SSIINFYSKVGLIEDA-ELVFSRMLE 346

Query: 466 PNERIWGSLVAA 477
            +   W  L+++
Sbjct: 347 KDVVTWNLLISS 358


>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 589

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 166/479 (34%), Positives = 279/479 (58%), Gaps = 41/479 (8%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +FD+I   +V  +N  I+++ +    +    +Y  M   G  P+ Y++  +  AC+   +
Sbjct: 38  LFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFN 97

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           +  G  +H    K G   ++F    L+ MY K G L+ AR++ ++MP +D+ TWNS++AG
Sbjct: 98  VYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAG 157

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           YA++G  + AL                                     E+F K+  +N++
Sbjct: 158 YARSGHMEAAL-------------------------------------ELFNKMPVRNVI 180

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQME-VHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           SW  +I+ YA N   A+A+++++ +E   G +PN +S+ASVLPAC  L AL +G++I  Y
Sbjct: 181 SWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAY 240

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYD 383
                   N  + NA+++++A+CG++ EA+ VFD++  + ++ SW +MI    + G+  D
Sbjct: 241 ARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCID 300

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV 443
           A+ L+ +ML+  + PD + FV +L AC+H G++ EGR  F+ M  ++++ P++EH+ CLV
Sbjct: 301 ALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLV 360

Query: 444 DLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503
           DLLGRAG+++EAY+LI+ MPM P+  IWG+L+ AC  + N+++G +AA+ +F L P   G
Sbjct: 361 DLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPG 420

Query: 504 YYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLR-SSKCL 560
            YV+LSNIYA AG W  V R+RK M    I K  G S +E+ D +    +  R +S+C+
Sbjct: 421 NYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFIVEDRITSRCV 479



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 136/284 (47%), Gaps = 14/284 (4%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           A   +LD Y  +  L+    Q+     +   P+    L+  Y   G M     +F+++  
Sbjct: 119 AMTALLDMYAKLGMLRSAR-QLFDEMPVRDIPTWN-SLIAGYARSGHMEAALELFNKMPV 176

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
           +NV+ +  LI  Y  N  Y  AL ++  + +  G  P+  +   VL ACS   +L +G +
Sbjct: 177 RNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKR 236

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNG 210
           I       G   N +  N ++ ++ +CG ++EA++V +++ SK ++ +WN+M+ G A +G
Sbjct: 237 IEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHG 296

Query: 211 RFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLV 265
           R  +AL +  +M   +++PD  T   LL + T+     V   +++F  +++K      L 
Sbjct: 297 RCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGG--MVAEGRQLFESMESKFQVAPKLE 354

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            +  ++ +        EA +L   M    + P+++   ++L AC
Sbjct: 355 HYGCLVDLLGRAGELQEAYNLIQNMP---MAPDSVIWGTLLGAC 395



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 18/221 (8%)

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           ++IH Y  R  L         L++   +   L  A T+FDQ+    V  +   I  +   
Sbjct: 5   KQIHAYSLRNGLDHT----KFLIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSI 60

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           G  +    L+ +M   G  P+  +F  +  AC+    +  G+       +       +  
Sbjct: 61  GHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKS-GFASDMFA 119

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
              L+D+  + G +  A  L  +MP+  +   W SL+A      +M+    AA  +F+  
Sbjct: 120 MTALLDMYAKLGMLRSARQLFDEMPVR-DIPTWNSLIAGYARSGHME----AALELFNKM 174

Query: 499 P--NQSGYYVLLSNIYAKAGRWGDVKRVRKFM---NSKGIK 534
           P  N   +  L+S  YA+ G++   K +  F+   N KG K
Sbjct: 175 PVRNVISWTALISG-YAQNGKY--AKALEMFIGLENEKGTK 212


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 187/545 (34%), Positives = 284/545 (52%), Gaps = 74/545 (13%)

Query: 70  LMRTYGACGQMVDTRHVFDEITN-----KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
           ++  Y   GQ  +    F E+        NVV +  LI     N   ++AL V++ M + 
Sbjct: 297 IISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLE 356

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGCLKE 183
           G  P+  T    + AC+  + L  G +IH   +KV  LD +L  GN LV  Y KC  ++ 
Sbjct: 357 GVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEV 416

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA---------------------------- 215
           ARR    +   D+V+WN+M+AGYA  G  +EA                            
Sbjct: 417 ARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQ 476

Query: 216 -------LDVCREMESLRIKPDADTMASLLPS---------------------------- 240
                  L+  + M S+ + P+  T++  L +                            
Sbjct: 477 YGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGV 536

Query: 241 ----VTNTSPENVLSVK-EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
               ++  S  + L V   +F +L  +++V WN +I+  A +     A+DL  +M +  +
Sbjct: 537 GSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNV 596

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
           E N +++ S LPAC  L+AL  G++IH+++ R  L     + N+L+DMY +CGS+ ++R 
Sbjct: 597 EVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRR 656

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           +FD M  +D+VSW  MIS YGM G G DAV LF +    GL P+ I F ++LSACSH+GL
Sbjct: 657 IFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGL 716

Query: 416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
           +EEG  YFK+M  +Y + P +E +AC+VDLL RAG+  E  + I++MP EPN  +WGSL+
Sbjct: 717 IEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLL 776

Query: 476 AACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK 535
            AC ++ N D+   AA ++F L P  SG YVL++NIY+ AGRW D  ++R  M  +G+ K
Sbjct: 777 GACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTK 836

Query: 536 MPGAS 540
            PG S
Sbjct: 837 PPGCS 841



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 124/421 (29%), Positives = 221/421 (52%), Gaps = 16/421 (3%)

Query: 19  ALVLSTQYTLLSGDACNDI----LDKYPDIKTLK---KLHAQIIINQHLHSNPSIGLKLM 71
           A +L +   L + D C +I    L K   +  L+   ++HAQ+++N  +     +G +L+
Sbjct: 73  AAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNG-VDVCEFLGSRLL 131

Query: 72  RTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCY 131
             Y   G + D R +FD+++ +NV  +  ++  Y     Y + + ++  M   G  PD +
Sbjct: 132 EVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHF 191

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
            +P V KACS   +  VG  ++  ++ +G + N      ++ M+ KCG +  ARR   ++
Sbjct: 192 VFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEI 251

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS 251
             KDV  WN MV+GY   G F +AL    +M+   +KPD  T  +++     +       
Sbjct: 252 EFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSG--QFEE 309

Query: 252 VKEMFLKLDN-----KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
             + FL++        N+VSW  +IA    N    EA+ ++ +M + G++PN+I++AS +
Sbjct: 310 ASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAV 369

Query: 307 PACGDLSALLLGRKIHRY-VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
            AC +LS L  GR+IH Y ++ ++L  +L + N+LVD YAKC S+  AR  F  ++  D+
Sbjct: 370 SACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDL 429

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           VSW +M++ Y + G   +A+ L S+M   G+ PD I +  +++  +  G  +    +F+ 
Sbjct: 430 VSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQR 489

Query: 426 M 426
           M
Sbjct: 490 M 490



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 182/423 (43%), Gaps = 107/423 (25%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           Y  +L+ C    +L +G Q+H  +V  G+D   F G+ L+ +Y + GC+++ARR+ + M 
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 151

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDV----------------------CREMESLRIKPD 230
            ++V +W +++  Y   G ++E + +                      C E+++ R+  D
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211

Query: 231 A-DTMASLLPSVTNTSPENVLSV----------KEMFLKLDNKNLVSWNVMIAVYANNSM 279
             D M S+     +    ++L +          +  F +++ K++  WN+M++ Y +   
Sbjct: 212 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 271

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
             +A+     M++ G++P+ ++                                    NA
Sbjct: 272 FKKALKCISDMKLSGVKPDQVTW-----------------------------------NA 296

Query: 340 LVDMYAKCGSLTEARTVFDQMRC-----QDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
           ++  YA+ G   EA   F +M        +VVSWT++I+    +G  ++A+++F KM++ 
Sbjct: 297 IISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLE 356

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGR------------------------YYFK-----I 425
           G+ P+SI   S +SAC++  LL  GR                        YY K     +
Sbjct: 357 GVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEV 416

Query: 426 MTEQYKLVPRIEHFACLVDLLGRA--GKVEEAYDLIKQMP---MEPNERIWGSLVAACCL 480
              ++ ++ + +  +    L G A  G  EEA +L+ +M    +EP+   W  LV     
Sbjct: 417 ARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQ 476

Query: 481 YSN 483
           Y +
Sbjct: 477 YGD 479



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 141/270 (52%), Gaps = 7/270 (2%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++K  K++H  ++ N H+  +  +G  L+  Y  C  +     VF E++ ++VV +N +I
Sbjct: 514 NLKLGKEIHGYVLRN-HIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSII 572

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            +   +    +AL + + M++   + +  T    L ACS   +L  G +IH  +++ GLD
Sbjct: 573 SACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLD 632

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
              F  N L+ MYG+CG ++++RR+ + MP +D+V+WN M++ Y  +G   +A+++ ++ 
Sbjct: 633 TCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQF 692

Query: 223 ESLRIKPDADTMASLLPSVTNTS--PENVLSVKEMFLKLD-NKNLVSWNVMIAVYANNSM 279
            ++ +KP+  T  +LL + +++    E     K M  +   +  +  +  M+ + +    
Sbjct: 693 RTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQ 752

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
             E ++   +M     EPNA    S+L AC
Sbjct: 753 FNETLEFIEKMP---FEPNAAVWGSLLGAC 779


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 170/506 (33%), Positives = 276/506 (54%), Gaps = 38/506 (7%)

Query: 37  ILDKYPDIKTLKKLHAQII-INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNV 95
           +L +  +++ L+++H Q++     L   P+  L         G +   R VFD I   N 
Sbjct: 24  LLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNT 83

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
             +N +IR Y N+    +AL +Y +M  H    + YT+P +LKACS  ++     QIH  
Sbjct: 84  FMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAH 143

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           ++K+G    ++  N L+ +Y K G +K AR + + +  +D V+WNSM+ GY + G  + A
Sbjct: 144 IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMA 203

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
                                                 E+F  +  +N++SW  MI+   
Sbjct: 204 Y-------------------------------------EIFNHMPERNIISWTSMISGCV 226

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
               P EA++L+ +M+  GI+ + +++ S L AC DL  L  G+ IH Y+++ +++ +  
Sbjct: 227 GAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPI 286

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           L   L+DMYAKCG L EA  VF +M  + V  WT+MIS Y + G+G +A+  F KM  +G
Sbjct: 287 LGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAG 346

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + P+ + F  +L+ACSHAGL+ E +  F+ M   +   P IEH+ C+VDLLGRAG ++EA
Sbjct: 347 VEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEA 406

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
            +LI+ MP++PN  IWG+L+ AC ++ N+++G      +  + P   G Y+ L++I+A A
Sbjct: 407 EELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAA 466

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGASV 541
           G W    RVR+ M  +G+ K+PG SV
Sbjct: 467 GEWNQAARVRRQMKEQGVSKLPGCSV 492



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 152/335 (45%), Gaps = 16/335 (4%)

Query: 36  DILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNV 95
           ++  K  DIK+ + L  Q+     +  N      ++  Y  CG++     +F+ +  +N+
Sbjct: 161 NVYSKSGDIKSARLLFDQVDQRDTVSWN-----SMIDGYTKCGEIEMAYEIFNHMPERNI 215

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
           + +  +I   V      +AL+++  M   G   D       L+AC+    L  G  IH  
Sbjct: 216 ISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAY 275

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           + K  ++ +   G  L+ MY KCG L+EA  V   M  K V  W +M++GYA +GR  EA
Sbjct: 276 IKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREA 335

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD-----NKNLVSWNVM 270
           L+   +M++  ++P+  T   +L + ++     V   K +F  ++       ++  +  M
Sbjct: 336 LEWFMKMQTAGVEPNQMTFTGILTACSHAGL--VHEAKLLFESMERIHGFKPSIEHYGCM 393

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
           + +     +  EA +L   M V   +PNA    ++L AC     L LG++I + + +   
Sbjct: 394 VDLLGRAGLLKEAEELIENMPV---KPNAAIWGALLNACHIHGNLELGKQIGKILIQVDP 450

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
               R  + L  ++A  G   +A  V  QM+ Q V
Sbjct: 451 GHGGRYIH-LASIHAAAGEWNQAARVRRQMKEQGV 484


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 173/537 (32%), Positives = 303/537 (56%), Gaps = 36/537 (6%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +LH  ++++  +    SI   L+  Y  CG+  D   +F  ++  + V +N +I  YV +
Sbjct: 260 QLHGLVVVSG-VDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQS 318

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
            L  ++L  +  M   G  PD  T+  +L + S   +L    QIHC +++  +  ++F  
Sbjct: 319 GLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLT 378

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           + L+  Y KC  +  A+ + +   S DVV + +M++GY  NG + ++L++ R +  ++I 
Sbjct: 379 SALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKIS 438

Query: 229 PDADTMASLLPSV----------------TNTSPENVLSVK-----------------EM 255
           P+  T+ S+LP +                     +N  ++                  E+
Sbjct: 439 PNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEI 498

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F +L  +++VSWN MI   A +  P+ A+D++ QM V GI  + +S+++ L AC +L + 
Sbjct: 499 FERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSE 558

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             G+ IH ++ +  L  ++  E+ L+DMYAKCG+L  A  VF  M+ +++VSW S+I+A 
Sbjct: 559 SFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAAC 618

Query: 376 GMSGQGYDAVALFSKML-MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
           G  G+  D++ LF +M+  SG+ PD I F+ ++S+C H G ++EG  +F+ MTE Y + P
Sbjct: 619 GNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQP 678

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
           + EH+AC+VDL GRAG++ EAY+ +K MP  P+  +WG+L+ AC L+ N+++  +A+  +
Sbjct: 679 QQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKL 738

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
             L P+ SGYYVL+SN +A A  W  V +VR  M  + ++K+PG S +E+N +  + 
Sbjct: 739 MDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLF 795



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/471 (24%), Positives = 217/471 (46%), Gaps = 38/471 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFD--EITNKNVVFFNVLIRSY 105
           K++HA +I+N  +  +     +++  Y  CG   D   +F   ++   ++  +N +I S+
Sbjct: 55  KQVHAFLIVNS-ISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSF 113

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
           V N L   AL  Y  M   G  PD  T+PC++KAC    +      +  +V  +G+D N 
Sbjct: 114 VRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNE 173

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           F  + L+  Y + G +    ++ + +  KD V WN M+ GYA+ G  D  +     M   
Sbjct: 174 FVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMD 233

Query: 226 RIKPDADTMASLLPSVTNT----------------------SPENVL-----------SV 252
           +I P+A T   +L    +                       S +N L             
Sbjct: 234 QISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDA 293

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
            ++F  +   + V+WN MI+ Y  + +  E++  + +M   G+ P+AI+ +S+LP+    
Sbjct: 294 SKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKF 353

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
             L   ++IH Y+ R  +  ++ L +AL+D Y KC  ++ A+ +F Q    DVV +T+MI
Sbjct: 354 ENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMI 413

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           S Y  +G   D++ +F  ++   + P+ I  VS+L        L+ GR     + ++   
Sbjct: 414 SGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKK-GF 472

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
             R      ++D+  + G++  AY++ +++  + +   W S++  C    N
Sbjct: 473 DNRCNIGCAVIDMYAKCGRMNLAYEIFERLS-KRDIVSWNSMITRCAQSDN 522



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 142/317 (44%), Gaps = 35/317 (11%)

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN--DMPS 193
           +L+ACS  N L  G Q+H  ++   +  + +    ++ MY  CG   +  ++    D+  
Sbjct: 41  LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRR 100

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP---SVTNTSPENVL 250
             +  WNS+++ + +NG  ++AL    +M    + PD  T   L+    ++ N    + L
Sbjct: 101 SSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFL 160

Query: 251 S------------------------------VKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
           S                                ++F ++  K+ V WNVM+  YA     
Sbjct: 161 SDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGAL 220

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
              +  +  M +  I PNA++   VL  C     + LG ++H  V    +     ++N+L
Sbjct: 221 DSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSL 280

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           + MY+KCG   +A  +F  M   D V+W  MIS Y  SG   +++  F +M+ SG+ PD+
Sbjct: 281 LSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDA 340

Query: 401 IAFVSVLSACSHAGLLE 417
           I F S+L + S    LE
Sbjct: 341 ITFSSLLPSVSKFENLE 357



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 167/373 (44%), Gaps = 37/373 (9%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
           + K+ +++  K++H  I+    +  +  +   L+  Y  C  +   +++F +  + +VV 
Sbjct: 350 VSKFENLEYCKQIHCYIM-RHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVV 408

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           F  +I  Y++N LY D+L +++ +      P+  T   +L       +L +G ++H  ++
Sbjct: 409 FTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFII 468

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           K G D     G  ++ MY KCG +  A  +   +  +D+V+WNSM+   AQ+     A+D
Sbjct: 469 KKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAID 528

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSPE------------------------------ 247
           + R+M    I  D  ++++ L +  N   E                              
Sbjct: 529 IFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYA 588

Query: 248 ---NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVA 303
              N+ +   +F  +  KN+VSWN +IA   N+    +++ L+ +M E  GI P+ I+  
Sbjct: 589 KCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFL 648

Query: 304 SVLPACGDLSALLLGRKIHR-YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            ++ +C  +  +  G +  R   E   +QP       +VD++ + G LTEA      M  
Sbjct: 649 EIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPF 708

Query: 363 -QDVVSWTSMISA 374
             D   W +++ A
Sbjct: 709 PPDAGVWGTLLGA 721



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 9/142 (6%)

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
           IA Y   S+P      +L+  +    P  +S+  +L AC + + L  G+++H ++    +
Sbjct: 14  IAPY-KKSLPLRNSSRFLEETI----PRRLSL--LLQACSNPNLLRQGKQVHAFLIVNSI 66

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQ--MRCQDVVSWTSMISAYGMSGQGYDAVALF 388
             +   +  ++ MYA CGS ++   +F +  +R   +  W S+IS++  +G    A+A +
Sbjct: 67  SGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFY 126

Query: 389 SKMLMSGLCPDSIAFVSVLSAC 410
            KML  G+ PD   F  ++ AC
Sbjct: 127 FKMLCFGVSPDVSTFPCLVKAC 148


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 183/524 (34%), Positives = 288/524 (54%), Gaps = 37/524 (7%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           N  +   L+  Y   G     R +FD++  +++  +N +I   + N     AL V   M 
Sbjct: 249 NVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR 308

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
           + G   +  T   +L  C     +   + IH  V+K GL+++LF  N L+ MY K G L+
Sbjct: 309 LEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLE 368

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
           +AR+    M   DVV+WNS++A Y QN     A     +M+    +PD  T+ SL   V 
Sbjct: 369 DARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVA 428

Query: 243 NTSP------------------ENVL---SVKEMFLKLD-------------NKNLVSWN 268
            +                    E+V+   +V +M+ KL               K+++SWN
Sbjct: 429 QSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWN 488

Query: 269 VMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
            +I  YA N + +EA+++Y  M E   I PN  +  S+LPA   + AL  G KIH  V +
Sbjct: 489 TLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIK 548

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
             L  ++ +   L+D+Y KCG L +A ++F Q+  +  V+W ++IS +G+ G     + L
Sbjct: 549 TNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKL 608

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           F +ML  G+ PD + FVS+LSACSH+G +EEG++ F++M E Y + P ++H+ C+VDLLG
Sbjct: 609 FGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLG 667

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507
           RAG +E AYD IK MP++P+  IWG+L+ AC ++ N+++G  A+D +F +     GYYVL
Sbjct: 668 RAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVL 727

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQII 550
           LSNIYA  G+W  V +VR     +G+KK PG +++E+N +V + 
Sbjct: 728 LSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVF 771



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 150/544 (27%), Positives = 270/544 (49%), Gaps = 57/544 (10%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N + D        K LHA +++   + S   I  +L+  Y   G +  +R  FD+I  K+
Sbjct: 123 NFLFDSSTKTPFAKCLHALLVVAGKVQS-IFISTRLVNLYANLGDVSLSRCTFDQIPQKD 181

Query: 95  VVFFNVLIRSYVNNYLYYDALH-VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           V  +N +I +YV+N  +++A+   Y+ + V    PD YT+P VLKAC    +L+ G +IH
Sbjct: 182 VYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIH 238

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
           C   K+G  +N+F    L+ MY + G    AR + +DMP +D+ +WN+M++G  QNG   
Sbjct: 239 CWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAA 298

Query: 214 EALDVCREMESLRIKPDADTMASLLP-------------------------------SVT 242
           +ALDV  EM    IK +  T+ S+LP                               ++ 
Sbjct: 299 QALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALI 358

Query: 243 NTSPE--NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
           N   +  N+   ++ F ++   ++VSWN +IA Y  N  P  A   +++M+++G +P+ +
Sbjct: 359 NMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLL 418

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKK-LQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           ++ S+             R +H ++ R+  L  ++ + NA+VDMYAK G L  A  VF+ 
Sbjct: 419 TLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEI 478

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM-SGLCPDSIAFVSVLSACSHAGLLEE 418
           +  +DV+SW ++I+ Y  +G   +A+ ++  M     + P+   +VS+L A +H G L++
Sbjct: 479 IPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQ 538

Query: 419 GRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
           G    KI     K    ++ F   CL+D+ G+ G++ +A  L  Q+P E +   W ++++
Sbjct: 539 G---MKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAIIS 594

Query: 477 ACCLYSNMDIGILAADHIFH--LAPNQSGYYVLLS----NIYAKAGRWGDVKRVRKFMNS 530
              ++ + +  +     +    + P+   +  LLS    + + + G+W       + M  
Sbjct: 595 CHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKW-----CFRLMQE 649

Query: 531 KGIK 534
            GIK
Sbjct: 650 YGIK 653



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 112/221 (50%), Gaps = 1/221 (0%)

Query: 25  QYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR 84
           Q  LL+  +   I+ +  D K  + +H  I+    L  +  IG  ++  Y   G +    
Sbjct: 414 QPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAH 473

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGS 143
            VF+ I  K+V+ +N LI  Y  N L  +A+ VYK M       P+  T+  +L A +  
Sbjct: 474 KVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHV 533

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
            +L  G++IH  V+K  L  ++F    L+ +YGKCG L +A  +   +P +  VTWN+++
Sbjct: 534 GALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAII 593

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           + +  +G  ++ L +  EM    +KPD  T  SLL + +++
Sbjct: 594 SCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHS 634


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 196/549 (35%), Positives = 277/549 (50%), Gaps = 70/549 (12%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
           L   P     + LHA  +++  L  +P +   L+ +Y   G     R VFD +  KNVV 
Sbjct: 27  LKSCPAQPLARALHAAAVVSG-LAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVG 85

Query: 98  FNVLIRSYVN---------------------NYLYY--------------DALHVYKNMS 122
           ++ LI  Y                       N + +              DA+     M 
Sbjct: 86  WSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMH 145

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
             GF PD     C L A      + VG Q+H  VVK G   +      L+ MYGKCG   
Sbjct: 146 SEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRAD 205

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
           E  RV ++    DV + N++VAG ++N +  EAL                          
Sbjct: 206 EIVRVFHESSHMDVASCNALVAGLSRNAQVSEAL-------------------------- 239

Query: 243 NTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
                  L  +E   +    N+VSW  ++A    N    EAVDL+  M+  G+EPN++++
Sbjct: 240 -------LLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTI 292

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
             VLPA  +++AL+ GR  H +  RK    ++ + +ALVDMYAKCG    ART+FD M  
Sbjct: 293 PCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPS 352

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           ++VVSW +MI  Y M G   +AV LF  M      PD + F  VL ACS AGL EEGR Y
Sbjct: 353 RNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRY 412

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           F  M + + + PR+EH+AC+V LLGR+GK++EAYDLI +MP EP+  IWGSL+ +C +Y 
Sbjct: 413 FNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYG 472

Query: 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-V 541
           N+ +  +AA+ +F L P  +G YVLLSNIYA    W  V RVR  M + G+KK  G S +
Sbjct: 473 NVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWI 532

Query: 542 EMNDQVQII 550
           E+ ++V ++
Sbjct: 533 EIKNKVHML 541



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 175/412 (42%), Gaps = 80/412 (19%)

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
           +N LY+   HV        F PD +  P  LK+C       +   +H + V  GL  + F
Sbjct: 4   SNSLYHFLRHV-------SFPPDPHLLPSALKSCPAQP---LARALHAAAVVSGLAEDPF 53

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
             + L+  Y + G    AR V + MP K+VV W++++AGY+  G  + A  +  +M S  
Sbjct: 54  VASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAG 113

Query: 227 IKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
           ++P                                 N+++WN +++    +    +AV  
Sbjct: 114 VEP---------------------------------NVITWNGLVSGLNRSGRALDAVTA 140

Query: 287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
            ++M   G  P+A  V+  L A GD+  + +G+++H YV +   + +  +  AL+DMY K
Sbjct: 141 LVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGK 200

Query: 347 CG-------------------------------SLTEARTVFDQMRCQ----DVVSWTSM 371
           CG                                ++EA  +F +  C+    +VVSWTS+
Sbjct: 201 CGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSI 260

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           ++    +G+  +AV LF  M   G+ P+S+    VL A ++   L  GR      + +  
Sbjct: 261 VACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSA-HCFSLRKG 319

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
            +  +   + LVD+  + GK   A  +   MP   N   W +++    ++ +
Sbjct: 320 FLHDVYVGSALVDMYAKCGKARHARTIFDAMPSR-NVVSWNAMIGGYAMHGD 370


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 174/480 (36%), Positives = 275/480 (57%), Gaps = 56/480 (11%)

Query: 127 DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR 186
           D +  TY  VL+ C+   S+  G +IH  +    ++ +   G+ LV MY  CG L+E RR
Sbjct: 98  DLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRR 157

Query: 187 VLN-------------------------------------------------DMPSKDVV 197
           + +                                                 ++  +DV+
Sbjct: 158 IFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVI 217

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN------TSPENVLS 251
           +WNSM++GY  NG  ++ LD+  +M  L I  D  TM S+  ++ N      +   N+ S
Sbjct: 218 SWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNS 277

Query: 252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
             ++F  +  +++VSW  MIA YA   +   +V L+ +ME   + PN+I++A +LPAC  
Sbjct: 278 AIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACAS 337

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           L+AL  G++IH ++ R     +  + NALVDMY KCG+L  AR +FD +  +D+VSWT M
Sbjct: 338 LAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVM 397

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           I+ YGM G G +A+A F++M  SG+ PD ++F+S+L ACSH+GLL+EG  +F +M     
Sbjct: 398 IAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCC 457

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
           + P+ EH+AC+VDLL RAG + +AY  IK MP+EP+  IWG+L+  C +Y ++ +    A
Sbjct: 458 IEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVA 517

Query: 492 DHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           +H+F L P  +GYYVLL+NIYA+A +W +VK++R+ +  +G++K PG S +E+  +V I 
Sbjct: 518 EHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIF 577



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 180/396 (45%), Gaps = 61/396 (15%)

Query: 37  ILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
           +L    D+K++   +++H+ II +  +  +  +G KL+  Y  CG + + R +FD++ N+
Sbjct: 107 VLQLCADLKSIQDGRRIHS-IIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANE 165

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF--------------DPDCYTYPCVLKA 139
            V  +N+L+  Y     + ++L ++K M   G               D D  ++  ++  
Sbjct: 166 KVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISG 225

Query: 140 CSGSNSLLVGLQIHCSVVKVGLDYNLFN--------GNGLVAMYGKCGCLKEARRVLNDM 191
              +     GL +   ++ +G++ +L           N L+ MY K G L  A +V   M
Sbjct: 226 YVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETM 285

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP----- 246
             + VV+W SM+AGYA+ G  D ++ +  EME   + P++ TMA +LP+  + +      
Sbjct: 286 GERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQ 345

Query: 247 -------ENVLSVK--------EMFLK-------------LDNKNLVSWNVMIAVYANNS 278
                   N  S+         +M+LK             +  K+LVSW VMIA Y  + 
Sbjct: 346 EIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHG 405

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLE 337
             +EA+  + +M   GIEP+ +S  S+L AC     L  G      +     ++P     
Sbjct: 406 YGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHY 465

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMI 372
             +VD+ A+ G+L++A      M  + D   W +++
Sbjct: 466 ACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALL 501



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 13/225 (5%)

Query: 27  TLLSGDACNDILDKYPDIKTLKKLHAQII---INQHLHSNPSIGLKL----MRTYGACGQ 79
           +++SG   N + +K  D      L  Q++   IN  L +  S+ L L    +  Y   G 
Sbjct: 221 SMISGYVSNGLSEKGLD------LFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGN 274

Query: 80  MVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA 139
           +     VF+ +  ++VV +  +I  Y    L   ++ ++  M      P+  T  C+L A
Sbjct: 275 LNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPA 334

Query: 140 CSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTW 199
           C+   +L  G +IH  +++ G   +    N LV MY KCG L  AR + + +P KD+V+W
Sbjct: 335 CASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSW 394

Query: 200 NSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
             M+AGY  +G   EA+    EM +  I+PD  +  S+L + +++
Sbjct: 395 TVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHS 439



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 13/165 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++H  I+ N     +  +   L+  Y  CG +   R +FD I  K++V + V+I  Y  
Sbjct: 345 QEIHGHILRNG-FSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGM 403

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG------LQIHCSVVKVGL 161
           +    +A+  +  M   G +PD  ++  +L ACS S  L  G      ++ +C +     
Sbjct: 404 HGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSE 463

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAG 205
            Y       +V +  + G L +A + +  MP   D   W +++ G
Sbjct: 464 HYAC-----IVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCG 503


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 178/535 (33%), Positives = 289/535 (54%), Gaps = 35/535 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++H +++    L ++ ++G  L+  Y  CG + D R VFD + +++ V +  L  +Y  
Sbjct: 149 REIHVRVM-EAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAE 207

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +    ++L  Y  M      P   TY  VL AC    +L  G QIH  +V+     ++  
Sbjct: 208 SGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRV 267

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L  MY KCG  K+AR V   +  +DV+ WN+M+ G+  +G+ +EA      M    +
Sbjct: 268 STALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGV 327

Query: 228 KPDADTMASLLPS----------------------VTNTSPENVL-----------SVKE 254
            PD  T  ++L +                      V++    N L             ++
Sbjct: 328 APDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQ 387

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F ++  +++VSW  ++  YA+     E+   + QM   G++ N I+   VL AC +  A
Sbjct: 388 VFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVA 447

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           L  G++IH  V +  L  +L + NAL+ MY KCGS+ +A  VF+ M  +DVV+W ++I  
Sbjct: 448 LKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGG 507

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
            G +G+G +A+  +  M   G+ P++  FV+VLSAC    L+EEGR  F  M++ Y +VP
Sbjct: 508 LGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVP 567

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
             +H+AC+VD+L RAG + EA D+I  +P++P+  +WG+L+AAC ++ N++IG  AA+H 
Sbjct: 568 TEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHC 627

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
             L P  +G YV LS IYA AG W DV ++RKFM  +G+KK PG S +E+  +V 
Sbjct: 628 LKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVH 682



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/473 (28%), Positives = 239/473 (50%), Gaps = 40/473 (8%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           K  D+   K++H  I+    +  N  I   L++ Y  CG + + R +FD+ +NK+VV +N
Sbjct: 40  KAKDLAVGKQVHEHIL-RCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWN 98

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
           V+I  Y +  L  +A +++  M     +PD +T+  +L ACS    L  G +IH  V++ 
Sbjct: 99  VMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEA 158

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           GL  +   GN L++MY KCG +++ARRV + M S+D V+W ++   YA++G  +E+L   
Sbjct: 159 GLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTY 218

Query: 220 REMESLRIKPDADTMASLLPSV----------------------TNTSPENVLS------ 251
             M   R++P   T  ++L +                       ++      L+      
Sbjct: 219 HAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKC 278

Query: 252 -----VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
                 +E+F  L  +++++WN MI  + ++    EA   + +M   G+ P+  +  +VL
Sbjct: 279 GAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVL 338

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
            AC     L  G++IH    +  L  ++R  NAL++MY+K GS+ +AR VFD+M  +DVV
Sbjct: 339 SACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVV 398

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           SWT+++  Y    Q  ++   F +ML  G+  + I ++ VL ACS+   L+ G+   +I 
Sbjct: 399 SWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGK---EIH 455

Query: 427 TEQYK--LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            E  K  L+  +     L+ +  + G VE+A  + + M M  +   W +L+  
Sbjct: 456 AEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMR-DVVTWNTLIGG 507



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 196/388 (50%), Gaps = 38/388 (9%)

Query: 111 YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG 170
           +Y    V + +   G   D Y Y  +L++C  +  L VG Q+H  +++ G+  N++  N 
Sbjct: 9   WYAPADVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNT 68

Query: 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
           L+ +Y  CG + EAR++ +   +K VV+WN M++GYA  G   EA ++   M+  R++PD
Sbjct: 69  LLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPD 128

Query: 231 ADTMASLL-----PSVTNTSPE----------------------------NVLSVKEMFL 257
             T  S+L     P+V N   E                            +V   + +F 
Sbjct: 129 KFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFD 188

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
            + +++ VSW  +   YA +    E++  Y  M    + P+ I+  +VL ACG L+AL  
Sbjct: 189 AMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEK 248

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           G++IH ++   +   ++R+  AL  MY KCG+  +AR VF+ +  +DV++W +MI  +  
Sbjct: 249 GKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVD 308

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK--LVPR 435
           SGQ  +A   F +ML  G+ PD   + +VLSAC+  G L  G+   +I     K  LV  
Sbjct: 309 SGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGK---EIHARAAKDGLVSD 365

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           +     L+++  +AG +++A  +  +MP
Sbjct: 366 VRFGNALINMYSKAGSMKDARQVFDRMP 393



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 177/357 (49%), Gaps = 34/357 (9%)

Query: 227 IKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
           +KP+     +LL    +    N    +++F K  NK++VSWNVMI+ YA+  +  EA +L
Sbjct: 59  VKPNVYITNTLLKLYAHCGSVN--EARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNL 116

Query: 287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
           +  M+   +EP+  +  S+L AC   + L  GR+IH  V    L  +  + NAL+ MYAK
Sbjct: 117 FTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAK 176

Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
           CGS+ +AR VFD M  +D VSWT++  AY  SG G +++  +  ML   + P  I +++V
Sbjct: 177 CGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNV 236

Query: 407 LSACSHAGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME 465
           LSAC     LE+G+  +  I+  +Y    R+     L  +  + G  ++A ++ + +   
Sbjct: 237 LSACGSLAALEKGKQIHAHIVESEYHSDVRVS--TALTKMYMKCGAFKDAREVFECLSYR 294

Query: 466 PNERIWGSLVAACCLYSNMDIGILAADH-IFH------LAPNQSGYYVLLS--------- 509
            +   W +++        +D G L   H  FH      +AP+++ Y  +LS         
Sbjct: 295 -DVIAWNTMIRGF-----VDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLA 348

Query: 510 ---NIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQII-ALPLRSSKCLTT 562
               I+A+A + G V  VR F N+  +  M   +  M D  Q+   +P R     TT
Sbjct: 349 RGKEIHARAAKDGLVSDVR-FGNA--LINMYSKAGSMKDARQVFDRMPKRDVVSWTT 402



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 98/194 (50%), Gaps = 4/194 (2%)

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMY 344
           D+   +   G + ++     +L +C     L +G+++H ++ R  ++PN+ + N L+ +Y
Sbjct: 14  DVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLY 73

Query: 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404
           A CGS+ EAR +FD+   + VVSW  MIS Y   G   +A  LF+ M    L PD   FV
Sbjct: 74  AHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFV 133

Query: 405 SVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           S+LSACS   +L  GR  + ++M  +  L         L+ +  + G V +A  +   M 
Sbjct: 134 SILSACSSPAVLNWGREIHVRVM--EAGLANDTTVGNALISMYAKCGSVRDARRVFDAMA 191

Query: 464 MEPNERIWGSLVAA 477
              +E  W +L  A
Sbjct: 192 SR-DEVSWTTLTGA 204


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 183/501 (36%), Positives = 275/501 (54%), Gaps = 38/501 (7%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           K  D++  KK+   ++    + SN  +   L+  Y  CG M   R +FDE ++KN+V +N
Sbjct: 235 KLKDLELGKKV-CNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYN 293

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            ++ +YV + L  + L V   M   G  PD  T    + AC+    L VG   H  V + 
Sbjct: 294 TIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRN 353

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           GL+      N ++ MY KCG  + A +V + M +K VVTWNS++AG  ++G  + AL + 
Sbjct: 354 GLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIF 413

Query: 220 REMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSM 279
            EM                       PE+              NLVSWN MI      SM
Sbjct: 414 GEM-----------------------PES--------------NLVSWNTMIGAMVQASM 436

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
             EA+DL  +M+  GI+ + +++  +  ACG L AL L + I+ Y+E+  +  +++L  A
Sbjct: 437 FEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTA 496

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           LVDM+++CG    A  VF+ M  +DV +WT+ I    + G    A+ LF +ML   +  D
Sbjct: 497 LVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKAD 556

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
              FV++L+A SH G +++GR  F  M + + + P+I H+ C+VDLLGRAG +EEA+DL+
Sbjct: 557 DFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLM 616

Query: 460 KQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519
           K MP++PN+ IWGS +AAC  + N++    A + I  LAP + G +VLLSNIYA AG+W 
Sbjct: 617 KSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWN 676

Query: 520 DVKRVRKFMNSKGIKKMPGAS 540
           DV RVR  M  KG +K+ G+S
Sbjct: 677 DVARVRLQMKEKGFQKVAGSS 697



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 203/441 (46%), Gaps = 66/441 (14%)

Query: 88  DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS-VHGFDPDCYTYPCVLKACSGSNSL 146
           DE T  ++   N LIR Y  + L  +A+ +Y +M  V G  PD +T+P +L ACS   + 
Sbjct: 79  DEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAF 138

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY 206
             G+Q+H  VVK+GL  +LF  N L+  Y  CG +   R+V ++M  ++VV+W S++ GY
Sbjct: 139 SEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGY 198

Query: 207 AQNGRFDEALDVCREMESLRIKPDADTMASLLPSV----------------------TNT 244
           +      EA+ +  EM  + ++P+  TM   + +                       +NT
Sbjct: 199 SVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNT 258

Query: 245 SPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
              N L           +V+E+F +  +KNLV +N +++ Y  + +  E + +  +M   
Sbjct: 259 LVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQK 318

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
           G  P+ +++ S + AC  L  L +G+  H YV R  L+    + NA++DMY KCG    A
Sbjct: 319 GQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAA 378

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQ-------------------------------GY 382
             VFD M  + VV+W S+I+     G+                                 
Sbjct: 379 CKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFE 438

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL 442
           +A+ L  +M   G+  D +  V + SAC + G L+  ++ +  + E+  +   ++    L
Sbjct: 439 EAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYI-EKNDIHIDMQLGTAL 497

Query: 443 VDLLGRAGKVEEAYDLIKQMP 463
           VD+  R G    A  + + M 
Sbjct: 498 VDMFSRCGDPLNAMRVFENME 518


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/515 (33%), Positives = 293/515 (56%), Gaps = 5/515 (0%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N +L  Y     L+   AQ + ++ L  +      L+  Y   G + + +  FD +  ++
Sbjct: 62  NQLLHLYAKFGKLRD--AQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRD 119

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
            V +N  I  +  N    ++L ++K M   GF+P  YT   +L A +  + L  G QIH 
Sbjct: 120 SVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHG 179

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
           S++      N+F  N L  MY KCG +++AR + + +  K++V+WN M++GYA+NG+ ++
Sbjct: 180 SIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEK 239

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
            + +  +M      PD  TM++++ +        V   + +F +   K++V W  M+  Y
Sbjct: 240 CIGLLHQMRLSGHMPDQVTMSTIIAAYCQCG--RVDEARRVFSEFKEKDIVCWTAMMVGY 297

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           A N    +A+ L+ +M +  IEP++ +++SV+ +C  L++L  G+ +H       L  NL
Sbjct: 298 AKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNL 357

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + +AL+DMY+KCG + +AR+VF+ M  ++VVSW +MI     +G   DA+ LF  ML  
Sbjct: 358 LVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQ 417

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
              PD++ F+ +LSAC H   +E+G+ YF  +T Q+ + P ++H+AC+V+LLGR G++E+
Sbjct: 418 KFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQ 477

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A  LIK M  +P+  IW +L++ C    ++    +AA H+F L P  +  Y++LSN+YA 
Sbjct: 478 AVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYAS 537

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            GRW DV  VR  M SK +KK  G S +E++++V 
Sbjct: 538 MGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVH 572



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 181/372 (48%), Gaps = 46/372 (12%)

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           F  N L+ +Y K G L++A+ + + M  +D+ +WN++++ YA++G               
Sbjct: 59  FLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSG--------------- 103

Query: 226 RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285
                                 ++ ++K  F ++  ++ VS+N  IA ++ NS P E+++
Sbjct: 104 ----------------------SIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLE 141

Query: 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
           L+ +M+  G EP   ++ S+L A   LS L  G++IH  +  +    N+ + NAL DMYA
Sbjct: 142 LFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYA 201

Query: 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
           KCG + +AR +FD +  +++VSW  MIS Y  +GQ    + L  +M +SG  PD +   +
Sbjct: 202 KCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMST 261

Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--- 462
           +++A    G ++E R  F    E+      I  +  ++    + G+ E+A  L  +M   
Sbjct: 262 IIAAYCQCGRVDEARRVFSEFKEK-----DIVCWTAMMVGYAKNGREEDALLLFNEMLLE 316

Query: 463 PMEPNERIWGSLVAACCLYSNMDIG-ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
            +EP+     S+V++C   +++  G  +    I     N       L ++Y+K G   D 
Sbjct: 317 HIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDA 376

Query: 522 KRVRKFMNSKGI 533
           + V   M ++ +
Sbjct: 377 RSVFNLMPTRNV 388



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 108/251 (43%), Gaps = 39/251 (15%)

Query: 318 GRKIHRYVERKKLQP-NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
            +++  ++E    QP +  L N L+ +YAK G L +A+ +FD+M  +D+ SW +++SAY 
Sbjct: 41  AKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYA 100

Query: 377 MSGQ------------------------GY-------DAVALFSKMLMSGLCPDSIAFVS 405
            SG                         G+       +++ LF +M   G  P     VS
Sbjct: 101 KSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVS 160

Query: 406 VLSACSHAGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM 464
           +L+A +    L  G+  +  I+   +  +  +  +  L D+  + G++E+A  L   +  
Sbjct: 161 ILNASAQLSDLRYGKQIHGSIIVRNF--LGNVFIWNALTDMYAKCGEIEQARWLFDCLT- 217

Query: 465 EPNERIWGSLVAACCLYSNMD--IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
           + N   W  +++        +  IG+L    +    P+Q     +++  Y + GR  + +
Sbjct: 218 KKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIA-AYCQCGRVDEAR 276

Query: 523 RVRKFMNSKGI 533
           RV      K I
Sbjct: 277 RVFSEFKEKDI 287


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 187/545 (34%), Positives = 283/545 (51%), Gaps = 74/545 (13%)

Query: 70  LMRTYGACGQMVDTRHVFDEITN-----KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
           ++  Y   GQ  +    F E+        NVV +  LI     N   ++AL V++ M + 
Sbjct: 297 IISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLE 356

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGCLKE 183
           G  P+  T    + AC+  + L  G +IH   +KV  LD +L  GN LV  Y KC  ++ 
Sbjct: 357 GVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEV 416

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA---------------------------- 215
           ARR    +   D+V+WN+M+AGYA  G  +EA                            
Sbjct: 417 ARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQ 476

Query: 216 -------LDVCREMESLRIKPDADTMASLLPS---------------------------- 240
                  L+  + M S+ + P+  T++  L +                            
Sbjct: 477 YGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGV 536

Query: 241 ----VTNTSPENVLSVK-EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
               ++  S  + L V   +F +L  +++V WN +I+  A +     A+DL  +M +  +
Sbjct: 537 GSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNV 596

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
           E N +++ S LPAC  L+AL  G++IH+++ R  L     + N+L+DMY +CGS+ ++R 
Sbjct: 597 EVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRR 656

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           +FD M  +D+VSW  MIS YGM G G DAV LF      GL P+ I F ++LSACSH+GL
Sbjct: 657 IFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGL 716

Query: 416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
           +EEG  YFK+M  +Y + P +E +AC+VDLL RAG+  E  + I++MP EPN  +WGSL+
Sbjct: 717 IEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLL 776

Query: 476 AACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK 535
            AC ++ N D+   AA ++F L P  SG YVL++NIY+ AGRW D  ++R  M  +G+ K
Sbjct: 777 GACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTK 836

Query: 536 MPGAS 540
            PG S
Sbjct: 837 PPGCS 841



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/421 (29%), Positives = 221/421 (52%), Gaps = 16/421 (3%)

Query: 19  ALVLSTQYTLLSGDACNDI----LDKYPDIKTLK---KLHAQIIINQHLHSNPSIGLKLM 71
           A +L +   L + D C +I    L K   +  L+   ++HAQ+++N  +     +G +L+
Sbjct: 73  AAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVN-GVDVCEFLGSRLL 131

Query: 72  RTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCY 131
             Y   G + D R +FD+++ +NV  +  ++  Y     Y + + ++  M   G  PD +
Sbjct: 132 EVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHF 191

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
            +P V KACS   +  VG  ++  ++ +G + N      ++ M+ KCG +  ARR   ++
Sbjct: 192 VFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEI 251

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS 251
             KDV  WN MV+GY   G F +AL    +M+   +KPD  T  +++     +       
Sbjct: 252 EFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSG--QFEE 309

Query: 252 VKEMFLKLDN-----KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
             + FL++        N+VSW  +IA    N    EA+ ++ +M + G++PN+I++AS +
Sbjct: 310 ASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAV 369

Query: 307 PACGDLSALLLGRKIHRY-VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
            AC +LS L  GR+IH Y ++ ++L  +L + N+LVD YAKC S+  AR  F  ++  D+
Sbjct: 370 SACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDL 429

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           VSW +M++ Y + G   +A+ L S+M   G+ PD I +  +++  +  G  +    +F+ 
Sbjct: 430 VSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQR 489

Query: 426 M 426
           M
Sbjct: 490 M 490



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 182/423 (43%), Gaps = 107/423 (25%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           Y  +L+ C    +L +G Q+H  +V  G+D   F G+ L+ +Y + GC+++ARR+ + M 
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 151

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDV----------------------CREMESLRIKPD 230
            ++V +W +++  Y   G ++E + +                      C E+++ R+  D
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211

Query: 231 A-DTMASLLPSVTNTSPENVLSV----------KEMFLKLDNKNLVSWNVMIAVYANNSM 279
             D M S+     +    ++L +          +  F +++ K++  WN+M++ Y +   
Sbjct: 212 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 271

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
             +A+     M++ G++P+ ++                                    NA
Sbjct: 272 FKKALKCISDMKLSGVKPDQVTW-----------------------------------NA 296

Query: 340 LVDMYAKCGSLTEARTVFDQMRC-----QDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
           ++  YA+ G   EA   F +M        +VVSWT++I+    +G  ++A+++F KM++ 
Sbjct: 297 IISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLE 356

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGR------------------------YYFK-----I 425
           G+ P+SI   S +SAC++  LL  GR                        YY K     +
Sbjct: 357 GVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEV 416

Query: 426 MTEQYKLVPRIEHFACLVDLLGRA--GKVEEAYDLIKQMP---MEPNERIWGSLVAACCL 480
              ++ ++ + +  +    L G A  G  EEA +L+ +M    +EP+   W  LV     
Sbjct: 417 ARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQ 476

Query: 481 YSN 483
           Y +
Sbjct: 477 YGD 479



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 140/270 (51%), Gaps = 7/270 (2%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++K  K++H  ++ N H+  +  +G  L+  Y  C  +     VF E++ ++VV +N +I
Sbjct: 514 NLKLGKEIHGYVLRN-HIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSII 572

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            +   +    +AL + + M++   + +  T    L ACS   +L  G +IH  +++ GLD
Sbjct: 573 SACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLD 632

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
              F  N L+ MYG+CG ++++RR+ + MP +D+V+WN M++ Y  +G   +A+++ +  
Sbjct: 633 TCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXF 692

Query: 223 ESLRIKPDADTMASLLPSVTNTS--PENVLSVKEMFLKLD-NKNLVSWNVMIAVYANNSM 279
            ++ +KP+  T  +LL + +++    E     K M  +   +  +  +  M+ + +    
Sbjct: 693 RTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQ 752

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
             E ++   +M     EPNA    S+L AC
Sbjct: 753 FNETLEFIEKMP---FEPNAAVWGSLLGAC 779


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 190/575 (33%), Positives = 299/575 (52%), Gaps = 62/575 (10%)

Query: 12  STTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLM 71
            T+KP+  +V     +LL    C   +        L ++ AQI+    L  N  +    +
Sbjct: 12  QTSKPLHRVVEDKFISLLR--TCGTCV-------RLHQIQAQIV-THGLEGNDYVTPSFI 61

Query: 72  RTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCY 131
                 G +   R VFD+    N   +N + R Y     + D + ++  M   G  P+C+
Sbjct: 62  TACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCF 121

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYG--------------- 176
           T+P V+K+C+ +N+   G ++HC V K G   N F G  L+ MY                
Sbjct: 122 TFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFA 181

Query: 177 ------------------KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
                              C  +  ARR+ +  P +DVV WN +V+GY + G    A ++
Sbjct: 182 EMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAAREL 241

Query: 219 CREMESLRIKPDADTMA-SLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
              M      PD D M+ + + S   T+ E V S  ++F ++  +N+ SWN +I  Y  N
Sbjct: 242 FDRM------PDRDVMSWNTVLSGYATNGE-VESFVKLFEEMPVRNVYSWNGLIGGYVRN 294

Query: 278 SMPAEAVDLYLQM----EVHGIE-------PNAISVASVLPACGDLSALLLGRKIHRYVE 326
            +  EA++ + +M    E  G E       PN  +V +VL AC  L  L +G+ +H Y E
Sbjct: 295 GLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAE 354

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
               + NL + NAL+DMYAKCG + +A  VFD +  +D+++W ++I+   M G   DA++
Sbjct: 355 SIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALS 414

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           LF +M  +G  PD + FV +LSAC+H GL+  G  +F+ M + Y +VP+IEH+ C+VDLL
Sbjct: 415 LFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVDLL 474

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
           GRAG +++A D++++MPMEP+  IW +L+ AC +Y N+++  LA   +  L PN  G +V
Sbjct: 475 GRAGLIDKAVDIVRKMPMEPDAVIWAALLGACRMYKNVEMAELALQRLIELEPNNPGNFV 534

Query: 507 LLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           ++SNIY   GR  DV R++  M   G +K+PG SV
Sbjct: 535 MVSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSV 569


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 182/521 (34%), Positives = 295/521 (56%), Gaps = 34/521 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G++     VF +I + +VV +N +I   V +     AL +   M   G  P+
Sbjct: 224 LVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPN 283

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +T    LKAC+      +G Q+H S++K+    +LF   GLV MY KC  + +ARR  +
Sbjct: 284 MFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYD 343

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            MP KD++ WN++++GY+Q G   +A+ +  +M S  I  +  T++++L SV +     V
Sbjct: 344 SMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKV 403

Query: 250 ------LSVK---------------------------EMFLKLDNKNLVSWNVMIAVYAN 276
                 +S+K                           ++F +   ++LV++  MI  Y+ 
Sbjct: 404 CKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQ 463

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
                EA+ LYLQM+   I+P+    +S+L AC +LSA   G+++H +  +     ++  
Sbjct: 464 YGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFA 523

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            N+LV+MYAKCGS+ +A   F ++  + +VSW++MI  Y   G G +A+ LF++ML  G+
Sbjct: 524 SNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGV 583

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P+ I  VSVL AC+HAGL+ EG+ YF+ M   + + P  EH+AC++DLLGR+GK+ EA 
Sbjct: 584 PPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAV 643

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           +L+  +P E +  +WG+L+ A  ++ N+++G  AA  +F L P +SG +VLL+NIYA AG
Sbjct: 644 ELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAG 703

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
            W +V +VRKFM    +KK PG S +E+ D+V    +  RS
Sbjct: 704 MWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRS 744



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 127/489 (25%), Positives = 243/489 (49%), Gaps = 48/489 (9%)

Query: 18  QALVLSTQYTLLSGDACNDILDKYP----------DIKTLKKLHAQIIINQHLHSNPSIG 67
           +AL++  +  LL G  CN+    +P          D+   +K+H   ++     S+  + 
Sbjct: 65  EALLVFNEMCLL-GVKCNEF--TFPSVLKACSMKRDLNMGRKVHGMAVVTG-FESDGFVA 120

Query: 68  LKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD 127
             L+  Y  CG + D+R +F  I  +NVV +N L   YV + L  +A+ ++K M   G  
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM 180

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           P+ ++   +L AC+G     +G +IH  ++K+GLD + F+ N LV MY K G ++ A  V
Sbjct: 181 PNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAV 240

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE 247
             D+   DVV+WN+++AG   +   D AL +  EM+    +P+  T++S L +      +
Sbjct: 241 FQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFK 300

Query: 248 NV--------------------LSVKEMFLKLD-------------NKNLVSWNVMIAVY 274
            +                    + + +M+ K +              K++++WN +I+ Y
Sbjct: 301 ELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGY 360

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           +      +AV L+ +M    I+ N  ++++VL +   L A+ + ++IH    +  +  + 
Sbjct: 361 SQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDF 420

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + N+L+D Y KC  + EA  +F++   +D+V++TSMI+AY   G G +A+ L+ +M  +
Sbjct: 421 YVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDA 480

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
            + PD     S+L+AC++    E+G+    +   ++  +  I     LV++  + G +E+
Sbjct: 481 DIKPDPFICSSLLNACANLSAYEQGK-QLHVHAIKFGFMCDIFASNSLVNMYAKCGSIED 539

Query: 455 AYDLIKQMP 463
           A     ++P
Sbjct: 540 ADRAFSEIP 548



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 148/558 (26%), Positives = 246/558 (44%), Gaps = 80/558 (14%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +LHA +I       +PS+   L+  Y  C +    R + DE +  +VV ++ L+  YV N
Sbjct: 2   ELHAHLI-KFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
               +AL V+  M + G   + +T+P VLKACS    L +G ++H   V  G + + F  
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           N LV MY KCG L ++RR+   +  ++VV+WN++ + Y Q+    EA+ + +EM    I 
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM 180

Query: 229 PDADTMASLLPSVTNTSPENVLSVK------EMFLKLD---------------------- 260
           P+  +++ +L +      E  L  K      +M L LD                      
Sbjct: 181 PNEFSISIILNACAGLQ-EGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVA 239

Query: 261 ------NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
                 + ++VSWN +IA    +     A+ L  +M+  G  PN  +++S L AC  +  
Sbjct: 240 VFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGF 299

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
             LGR++H  + +     +L     LVDMY+KC  + +AR  +D M  +D+++W ++IS 
Sbjct: 300 KELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISG 359

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS-----------HAGLLEEGRYY- 422
           Y   G   DAV+LFSKM    +  +     +VL + +           H   ++ G Y  
Sbjct: 360 YSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSD 419

Query: 423 FKIMTEQYKLVPRIEH------------------FACLVDLLGRAGKVEEAYDLIKQMP- 463
           F ++        +  H                  +  ++    + G  EEA  L  QM  
Sbjct: 420 FYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQD 479

Query: 464 --MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV------LLSNIYAKA 515
             ++P+  I  SL+ AC   S  + G        H+   + G+         L N+YAK 
Sbjct: 480 ADIKPDPFICSSLLNACANLSAYEQG-----KQLHVHAIKFGFMCDIFASNSLVNMYAKC 534

Query: 516 GRWGDVKRVRKFMNSKGI 533
           G   D  R    + ++GI
Sbjct: 535 GSIEDADRAFSEIPNRGI 552



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 174/363 (47%), Gaps = 39/363 (10%)

Query: 150 LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQN 209
           +++H  ++K G   +    N LV +Y KC     AR+++++    DVV+W+S+++GY QN
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 210 GRFDEALDVCREMESLRIKPDADTMASLLPS------------------VTNTSPE---- 247
           G  +EAL V  EM  L +K +  T  S+L +                  VT    +    
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 248 NVLSV-----------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE 296
           N L V           + +F  +  +N+VSWN + + Y  + +  EAV L+ +M   GI 
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM 180

Query: 297 PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTV 356
           PN  S++ +L AC  L    LGRKIH  + +  L  +    NALVDMY+K G +  A  V
Sbjct: 181 PNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAV 240

Query: 357 FDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL 416
           F  +   DVVSW ++I+   +      A+ L  +M  SG  P+     S L AC+  G  
Sbjct: 241 FQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFK 300

Query: 417 EEGRYYFKIMTEQYKLVPRIEHFAC--LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
           E GR   ++ +   K+    + FA   LVD+  +   +++A      MP + +   W +L
Sbjct: 301 ELGR---QLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMP-KKDIIAWNAL 356

Query: 475 VAA 477
           ++ 
Sbjct: 357 ISG 359



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 142/286 (49%), Gaps = 17/286 (5%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           IK  K++H  I I   ++S+  +   L+ TYG C  + +   +F+E T +++V +  +I 
Sbjct: 401 IKVCKQIHT-ISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMIT 459

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           +Y       +AL +Y  M      PD +    +L AC+  ++   G Q+H   +K G   
Sbjct: 460 AYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMC 519

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           ++F  N LV MY KCG +++A R  +++P++ +V+W++M+ GYAQ+G   EAL +  +M 
Sbjct: 520 DIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQML 579

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
              + P+  T+ S+L +  +    N    K+ F K++        VM  +       A  
Sbjct: 580 RDGVPPNHITLVSVLCACNHAGLVN--EGKQYFEKME--------VMFGIKPTQEHYACM 629

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGD---LSALLLGRKIHRYVE 326
           +DL   +   G    A+ + + +P   D     ALL   +IH+ +E
Sbjct: 630 IDL---LGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIE 672


>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 177/497 (35%), Positives = 285/497 (57%), Gaps = 7/497 (1%)

Query: 48   KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
            K+ HA  I+N  L  +  +G  ++  Y   G + D   VF  +  K+VV +N+LI SYV 
Sbjct: 1398 KQGHAIAILNS-LDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQ 1456

Query: 108  NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
            ++    AL++   M       D  T   +L A + ++++ +G + HC  ++  L+ ++  
Sbjct: 1457 HHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVV 1516

Query: 168  GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
             N ++ MY KC  + +AR+V +    +D+V WN+++A YAQ G   EAL +  +M+   +
Sbjct: 1517 ANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSV 1576

Query: 228  KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN----KNLVSWNVMIAVYANNSMPAEA 283
             P+  +  S++         N    K+MF ++ +     NL++W  +I+  A +    EA
Sbjct: 1577 PPNVISWNSVILGFLRNGQVN--EAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEA 1634

Query: 284  VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
            +  + +M+  GI P+  S+ SVL AC D+ +L  GR IH ++ R +   ++ +  +LVDM
Sbjct: 1635 ILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDM 1694

Query: 344  YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
            YAKCGS+ EA+ VF  M  +++  + +MISAY + GQ  +A+ALF  +   G+ PDSI F
Sbjct: 1695 YAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITF 1754

Query: 404  VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
             S+LSACSHAGL+ EG   F  M  ++ + P +EH+ C+V LL R G ++EA  LI  MP
Sbjct: 1755 TSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMP 1814

Query: 464  MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKR 523
             +P+  I GSL+ AC  +  +++G   + H+F L P+ SG YV LSN YA AGRW +V  
Sbjct: 1815 FQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSN 1874

Query: 524  VRKFMNSKGIKKMPGAS 540
            +R  M  +G++K PG S
Sbjct: 1875 MRDLMKVRGLRKNPGCS 1891



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 148/530 (27%), Positives = 258/530 (48%), Gaps = 47/530 (8%)

Query: 44   IKTLKKLHAQIIINQHLHS-NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
            + T +++HA+I+ N    + N  +  KL+  Y  C        +F  +  +NV  +  ++
Sbjct: 1190 LHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIV 1249

Query: 103  RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
                      DAL  +  M  +G  PD +  P VLKAC     + +G  +H  V+K+G  
Sbjct: 1250 GLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFG 1309

Query: 163  YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
              +F  + LV MYGKCG L++AR+V + M  K+VVTWNSM+ GY QNG   EA+DV  +M
Sbjct: 1310 ACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDM 1369

Query: 223  ESLRIKPDADTMASLLPSVTNTSP------------------ENVLS------------- 251
                I+P   T+AS L +  N                     +N+L              
Sbjct: 1370 RVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLI 1429

Query: 252  --VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
               + +F ++  K++V+WN++I+ Y  +    +A+++   M    +  ++++++S+L A 
Sbjct: 1430 EDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSAS 1489

Query: 310  GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
               S + LG++ H Y  R+ L+ ++ + N+++DMYAKC  + +AR VFD    +D+V W 
Sbjct: 1490 AVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWN 1549

Query: 370  SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
            ++++AY   G   +A+ LF +M    + P+ I++ SV+      G + E +  F  M + 
Sbjct: 1550 TLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQM-QS 1608

Query: 430  YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP---MEPNERIWGSLVAACC----LYS 482
                P +  +  L+  L ++G   EA    ++M    + P+     S++ AC     L+ 
Sbjct: 1609 LGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWY 1668

Query: 483  NMDIGILAADHIFHLA-PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531
               I      H F L+ P  +     L ++YAK G   + K+V   M+SK
Sbjct: 1669 GRAIHGFITRHEFCLSVPVATS----LVDMYAKCGSIDEAKKVFHMMSSK 1714



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 209/451 (46%), Gaps = 74/451 (16%)

Query: 70   LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
            L+  YG CG + D R VFD +  KNVV +N +I  YV N L  +A+ V+ +M V G +P 
Sbjct: 1318 LVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPT 1377

Query: 130  CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
              T    L A +  ++L+ G Q H   +   LD +   G+ ++  Y K G +++A  V +
Sbjct: 1378 RVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFS 1437

Query: 190  DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP--- 246
             M  KDVVTWN +++ Y Q+ +  +AL++C  M S  ++ D+ T++S+L +   TS    
Sbjct: 1438 RMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKL 1497

Query: 247  ------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                          E +   +++F     ++LV WN ++A YA 
Sbjct: 1498 GKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQ 1557

Query: 277  NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
              +  EA+ L+ QM+   + PN IS  SV          +LG                  
Sbjct: 1558 VGLSGEALKLFYQMQFDSVPPNVISWNSV----------ILG------------------ 1589

Query: 337  ENALVDMYAKCGSLTEARTVFDQMRC----QDVVSWTSMISAYGMSGQGYDAVALFSKML 392
                   + + G + EA+ +F QM+      ++++WT++IS    SG GY+A+  F KM 
Sbjct: 1590 -------FLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQ 1642

Query: 393  MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
             +G+ P   +  SVL AC+    L  GR     +T +++    +     LVD+  + G +
Sbjct: 1643 EAGIRPSIASITSVLLACTDIPSLWYGRAIHGFIT-RHEFCLSVPVATSLVDMYAKCGSI 1701

Query: 453  EEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
            +EA  +   M       I+ ++++A  L+  
Sbjct: 1702 DEAKKVFHMMS-SKELPIYNAMISAYALHGQ 1731



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 151/312 (48%), Gaps = 20/312 (6%)

Query: 177  KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS 236
            K G L+E+  +L++M  +D      +     Q   ++ AL   +++ + RI  + D  A 
Sbjct: 1151 KDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHA-RILKNGDFFAK 1209

Query: 237  LLPSVTNTSPENVLSV-----------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285
                  N   E  L V             +F +L  +N+ SW  ++ +        +A+ 
Sbjct: 1210 ------NEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALL 1263

Query: 286  LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
             +++M+ +G+ P+   + +VL ACG L  + LG+ +H YV +      + + ++LVDMY 
Sbjct: 1264 GFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYG 1323

Query: 346  KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
            KCG L +AR VFD M  ++VV+W SMI  Y  +G   +A+ +F  M + G+ P  +   S
Sbjct: 1324 KCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVAS 1383

Query: 406  VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME 465
             LSA ++   L EG+    I       +  I   + +++   + G +E+A +L+    +E
Sbjct: 1384 FLSASANLDALIEGKQGHAIAILNSLDLDNILG-SSIINFYSKVGLIEDA-ELVFSRMLE 1441

Query: 466  PNERIWGSLVAA 477
             +   W  L+++
Sbjct: 1442 KDVVTWNLLISS 1453


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 186/566 (32%), Positives = 297/566 (52%), Gaps = 78/566 (13%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF----FNVLIR 103
           K+LH  II +  L  +  +  KL+  Y +  + +   H   E +N   +F    +N+LI 
Sbjct: 99  KQLHGHII-SSGLVEDSFLVSKLVMFYSSL-EFLPEAHTLVETSN---LFRPCSWNILIT 153

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           SYV + LY  A+  YK M   G  PD +T+P +LKAC  + +L  GL++H S+      +
Sbjct: 154 SYVKHKLYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWSTPW 213

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQN-------------- 209
           +LF  N L++MYG+CG +  AR + ++M  +D V+WNSM++ Y+                
Sbjct: 214 SLFVHNALISMYGRCGEVDTARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQ 273

Query: 210 ---------------------GRFDEALDVCREMESLRIKPDADTMA------------- 235
                                G F +AL +  +M +  I  D   M              
Sbjct: 274 SKCLEINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIR 333

Query: 236 --------------SLLPSVTNTSPENVLSVKE-----MFLKL-DNKNLVSWNVMIAVYA 275
                          +L +V N         K+     M  +L D+K+ ++WN M++   
Sbjct: 334 LGKEIHGFTIRHYHHMLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNSMLSGLT 393

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK-LQPNL 334
           +     EA+ L+ ++ + G+EP+ ++ AS+LP C  ++ L  GR+ H Y+ + +  + +L
Sbjct: 394 HLGRVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITKHRDFRDHL 453

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            L NALVDMYA+ G ++EA+ +F  +  +D V++TS+I+ YGM G+G  AV LF +M   
Sbjct: 454 LLWNALVDMYARAGKVSEAKRIFYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRF 513

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
            + PD I  ++VLSACSH+GL+ +    F  M   + L PR+EH+AC+ DL GR G + +
Sbjct: 514 QIKPDHITMIAVLSACSHSGLVNQAELLFAEMQSVHGLSPRLEHYACMADLFGRVGLLNK 573

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A ++I +MP  P   IW +L+ ACC++ NMDIG  AA+ +  + P  SGYYVL++N+YA 
Sbjct: 574 AKEIITRMPYRPTSAIWATLIGACCIHGNMDIGEWAAEKLLEMRPEHSGYYVLIANMYAA 633

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS 540
           AG W  +  +R  M   G+ K+PG S
Sbjct: 634 AGSWSKLAEIRTLMRDSGVAKIPGCS 659



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 109/451 (24%), Positives = 194/451 (43%), Gaps = 79/451 (17%)

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           FD    +   +L +C+ S+SL  G Q+H  ++  GL  + F  + LV  Y     L EA 
Sbjct: 75  FDLILQSISILLVSCTKSSSLPPGKQLHGHIISSGLVEDSFLVSKLVMFYSSLEFLPEAH 134

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT- 244
            ++         +WN ++  Y ++  ++ A+   ++M S  ++PD  T  S+L +   T 
Sbjct: 135 TLVETSNLFRPCSWNILITSYVKHKLYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQ 194

Query: 245 ----------------SPENVL----------------SVKEMFLKLDNKNLVSWNVMIA 272
                           +P ++                 + + +F  +  ++ VSWN MI+
Sbjct: 195 NLKFGLEVHKSINSWSTPWSLFVHNALISMYGRCGEVDTARNLFDNMLERDAVSWNSMIS 254

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAIS------------------------------- 301
            Y++  M  EA +L+  M+   +E N ++                               
Sbjct: 255 CYSSRGMWREAFELFESMQSKCLEINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHL 314

Query: 302 --VASV--LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
             VA +  L AC  + A+ LG++IH +  R        ++NALV MYA+C  +  A  +F
Sbjct: 315 DDVAMIIGLGACSHIGAIRLGKEIHGFTIRHYHHMLSTVQNALVTMYARCKDIRHAYMLF 374

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
                +  ++W SM+S     G+  +A+ LF ++L+ G+ PD + F S+L  C+    L+
Sbjct: 375 RLNDDKSRITWNSMLSGLTHLGRVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQ 434

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA- 476
            GR +   +T+       +  +  LVD+  RAGKV EA  +   +  + +E  + SL+A 
Sbjct: 435 HGREFHCYITKHRDFRDHLLLWNALVDMYARAGKVSEAKRIFYSLS-KKDEVTYTSLIAG 493

Query: 477 ---------ACCLYSNMDIGILAADHIFHLA 498
                    A  L+  M    +  DHI  +A
Sbjct: 494 YGMQGEGGKAVRLFEEMKRFQIKPDHITMIA 524



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 164/394 (41%), Gaps = 49/394 (12%)

Query: 23  STQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD 82
           ST ++L   +A   +  +  ++ T + L   ++    +  N      ++  Y + G   +
Sbjct: 210 STPWSLFVHNALISMYGRCGEVDTARNLFDNMLERDAVSWN-----SMISCYSSRGMWRE 264

Query: 83  TRHVFDEITNK----NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLK 138
              +F+ + +K    NVV +N++    +    +  AL +   M   G   D       L 
Sbjct: 265 AFELFESMQSKCLEINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLG 324

Query: 139 ACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVT 198
           ACS   ++ +G +IH   ++          N LV MY +C  ++ A  +      K  +T
Sbjct: 325 ACSHIGAIRLGKEIHGFTIRHYHHMLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRIT 384

Query: 199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS------------- 245
           WNSM++G    GR +EAL + RE+    ++PD  T AS+LP     +             
Sbjct: 385 WNSMLSGLTHLGRVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYIT 444

Query: 246 ---------------------PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAV 284
                                   V   K +F  L  K+ V++  +IA Y       +AV
Sbjct: 445 KHRDFRDHLLLWNALVDMYARAGKVSEAKRIFYSLSKKDEVTYTSLIAGYGMQGEGGKAV 504

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK---LQPNLRLENALV 341
            L+ +M+   I+P+ I++ +VL AC    + L+ +    + E +    L P L     + 
Sbjct: 505 RLFEEMKRFQIKPDHITMIAVLSACSH--SGLVNQAELLFAEMQSVHGLSPRLEHYACMA 562

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVS-WTSMISA 374
           D++ + G L +A+ +  +M  +   + W ++I A
Sbjct: 563 DLFGRVGLLNKAKEIITRMPYRPTSAIWATLIGA 596



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 172/372 (46%), Gaps = 32/372 (8%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           I+  K++H   I + H H   ++   L+  Y  C  +     +F    +K+ + +N ++ 
Sbjct: 332 IRLGKEIHGFTIRHYH-HMLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNSMLS 390

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
              +     +AL +++ + + G +PD  T+  +L  C+    L  G + HC + K   D+
Sbjct: 391 GLTHLGRVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITK-HRDF 449

Query: 164 --NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             +L   N LV MY + G + EA+R+   +  KD VT+ S++AGY   G   +A+ +  E
Sbjct: 450 RDHLLLWNALVDMYARAGKVSEAKRIFYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLFEE 509

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS-----WNVMIAVYAN 276
           M+  +IKPD  TM ++L + +++   N    + +F ++ + + +S     +  M  ++  
Sbjct: 510 MKRFQIKPDHITMIAVLSACSHSGLVN--QAELLFAEMQSVHGLSPRLEHYACMADLFGR 567

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
             +  +A ++  +M      P +   A+++ AC     + +G     +   K L+  +R 
Sbjct: 568 VGLLNKAKEIITRMPY---RPTSAIWATLIGACCIHGNMDIG----EWAAEKLLE--MRP 618

Query: 337 ENA-----LVDMYAKCGSLTEARTVFDQMRCQDVV-----SWTSMISAY--GMSGQGYDA 384
           E++     + +MYA  GS ++   +   MR   V      SW  + S +     G     
Sbjct: 619 EHSGYYVLIANMYAAAGSWSKLAEIRTLMRDSGVAKIPGCSWVDVGSEFISFSVGDTSSP 678

Query: 385 VALFSKMLMSGL 396
            AL SK+L+  L
Sbjct: 679 QALESKLLLDSL 690


>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
 gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
          Length = 531

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 170/508 (33%), Positives = 290/508 (57%), Gaps = 17/508 (3%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLM--RTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           ++ +K++HA +++   L S+PS   +L+   + G  G     R VFD I + +   +N L
Sbjct: 21  LRQIKQVHALMVLRGFL-SDPSALRELIFASSVGVRGGTAHARLVFDRIPHPDRFMYNTL 79

Query: 102 IRSYVNNYLYYDALHVYKNMSVH------GFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
           IR   ++Y   DA+ +Y  M+ H      G  PD  T+P VL+AC+   +   G Q+H  
Sbjct: 80  IRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASETGAQVHAH 139

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           VVK G + + F  N L+ M+  CG L  A  + +    +D V W++M++G+A+ G    A
Sbjct: 140 VVKAGCESDAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAA 199

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
            ++  E   ++     + M +    + + +P      +E+F    ++++VSWN MI+ Y 
Sbjct: 200 RELFDE-SPVKDLVSWNVMITAYAKLGDMAP-----ARELFDGAPDRDVVSWNAMISGYV 253

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK--KLQPN 333
                 +A++L+ QM+  G +P+ +++ S+L AC D   +  GR++HR++  +  ++ P+
Sbjct: 254 RCGSHKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPS 313

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             L NAL+DMYAKCGS+T A  VF  M+ ++V +W S+I    + G   +A+ +F KML 
Sbjct: 314 TVLGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQ 373

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
             + PD I FV+VL ACSH G++++G  YF +M ++Y + P ++H+ C+VD+L RAG ++
Sbjct: 374 GNVKPDEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCMVDMLSRAGLLK 433

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA++ I  M +EPN  IW +L+ AC ++  +++   A   +     + SG +VLLSNIYA
Sbjct: 434 EAFEFIGTMKIEPNPVIWRTLLGACRIHGELELAEHANQELLKARSDASGDFVLLSNIYA 493

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGASV 541
             G W   + +RK M+  G+ K  G +V
Sbjct: 494 SVGEWLGSENMRKLMDDSGVNKEAGCAV 521


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 181/535 (33%), Positives = 298/535 (55%), Gaps = 40/535 (7%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           L  ++ +N+ L  N S    L+  Y  C  + + + +FD+   KN+V +N +I  Y    
Sbjct: 229 LAVKLGLNEELMVNNS----LIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREE 284

Query: 110 LYYDALHVYKNMSVHG--FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                 ++ + M         D +T   VL  C   + L    ++H    + GL  N   
Sbjct: 285 DVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELV 344

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N  +A Y +CG L  + RV + M +K V +WN+++ GYAQN    +ALD+  +M    +
Sbjct: 345 ANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGL 404

Query: 228 KPDADTMASLL------------PSVTNTSPENVLSV---------------------KE 254
            PD  T+ SLL              +   +  N L+V                     + 
Sbjct: 405 DPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQV 464

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F  +++++LVSWNVMIA Y+ N +P EA++L+ QM   GI+P  I++  V  AC  LSA
Sbjct: 465 LFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSA 524

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           L LG+++H +  +  L  ++ + ++++DMYAK G +  ++ +FD++R +DV SW  +I+ 
Sbjct: 525 LRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAG 584

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
           YG+ G+G +A+ LF KML  GL PD   F  +L ACSHAGL+E+G  YF  M   + + P
Sbjct: 585 YGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEP 644

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
           ++EH+ C+VD+LGRAG++++A  LI++MP +P+ RIW SL+++C ++ N+ +G   A+ +
Sbjct: 645 KLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKL 704

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
             L P +   YVL+SN++A +G+W DV+RVR  M   G++K  G S +E+  +V 
Sbjct: 705 LELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVH 759



 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/418 (31%), Positives = 210/418 (50%), Gaps = 42/418 (10%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           DI+  ++LH  +  +    ++  +  +++  Y  CG   D+R VFD++  KN+  +N ++
Sbjct: 13  DIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIV 72

Query: 103 RSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
            +Y  N L+ DA+ ++  + SV    PD +T PCV+KAC+G   L +G  IH    K+ L
Sbjct: 73  SAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDL 132

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             ++F GN L+AMYGKCG ++EA +V   MP +++V+WNS++ G+++NG   E+ +  RE
Sbjct: 133 VSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFRE 192

Query: 222 M----ESLRIKPDADTMASLLPSVTNTSP-ENVLSVKEMFLKL----------------- 259
           M    ES    PD  T+ ++LP        E  ++V  + +KL                 
Sbjct: 193 MLVGEESF--VPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYS 250

Query: 260 ---------------DNKNLVSWNVMIAVYANNSMPAEAVDLY--LQMEVHGIEPNAISV 302
                          D KN+VSWN MI  YA          L   +Q E   ++ +  ++
Sbjct: 251 KCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTI 310

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            +VLP C + S L   +++H Y  R  LQ N  + NA +  Y +CG+L  +  VFD M  
Sbjct: 311 LNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDT 370

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           + V SW +++  Y  +     A+ L+ +M  SGL PD     S+L ACS    L  G 
Sbjct: 371 KTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGE 428



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 197/411 (47%), Gaps = 42/411 (10%)

Query: 7   LCRHFSTTKPVQ---ALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSN 63
           +CR F   + +Q   A + + ++T+L+      +  +  ++++LK+LH        L SN
Sbjct: 286 VCRTFYLLQKMQTEDAKMKADEFTILN---VLPVCLERSELQSLKELHG-YSWRHGLQSN 341

Query: 64  PSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV 123
             +    +  Y  CG +  +  VFD +  K V  +N L+  Y  N     AL +Y  M+ 
Sbjct: 342 ELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTD 401

Query: 124 HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183
            G DPD +T   +L ACS   SL  G +IH   ++ GL  + F G  L+++Y  CG    
Sbjct: 402 SGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFA 461

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           A+ + + M  + +V+WN M+AGY+QNG  DEA+++ R+M S  I+P    +  +  + + 
Sbjct: 462 AQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQ 521

Query: 244 TSP-----------------ENVL---SVKEMFLK-------------LDNKNLVSWNVM 270
            S                  E++    S+ +M+ K             L  K++ SWNV+
Sbjct: 522 LSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVI 581

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK-IHRYVERKK 329
           IA Y  +    EA++L+ +M   G++P+  +   +L AC     +  G +  ++ +    
Sbjct: 582 IAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHN 641

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSG 379
           ++P L     +VDM  + G + +A  + ++M    D   W+S++S+  + G
Sbjct: 642 IEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHG 692



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 186/369 (50%), Gaps = 21/369 (5%)

Query: 6   LLCRHFSTTKPVQALVLSTQYTLLSGD----ACNDILDKYPDIKTL---KKLHAQIIINQ 58
           LLC +   + P +AL L  Q T    D        +L     +K+L   +++H   + N 
Sbjct: 379 LLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNG 438

Query: 59  HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVY 118
            L  +P IG+ L+  Y  CG+    + +FD + ++++V +NV+I  Y  N L  +A++++
Sbjct: 439 -LAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLF 497

Query: 119 KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC 178
           + M   G  P      CV  ACS  ++L +G ++HC  +K  L  ++F  + ++ MY K 
Sbjct: 498 RQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKG 557

Query: 179 GCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238
           GC+  ++R+ + +  KDV +WN ++AGY  +GR  EAL++  +M  L +KPD  T   +L
Sbjct: 558 GCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGIL 617

Query: 239 PSVTNTS-PENVLSVKEMFLKLDN--KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
            + ++    E+ L      L L N    L  +  ++ +        +A+ L  +M     
Sbjct: 618 MACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPG--- 674

Query: 296 EPNAISVASVLPACGDLSALLLGRKI-HRYVERKKLQPNLRLENALV--DMYAKCGSLTE 352
           +P++   +S+L +C     L LG K+ ++ +E +  +P    EN ++  +++A  G   +
Sbjct: 675 DPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKP----ENYVLISNLFAGSGKWDD 730

Query: 353 ARTVFDQMR 361
            R V  +M+
Sbjct: 731 VRRVRGRMK 739



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 95/176 (53%), Gaps = 6/176 (3%)

Query: 305 VLPACGDLSALLLGRKIHRYVE-RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           +L ACG    + +GR++H  V    +   +  L   ++ MY+ CGS +++R VFD++R +
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKML-MSGLCPDSIAFVSVLSACSHAGLLEEG-RY 421
           ++  W +++SAY  +    DA+++FS+++ ++   PD+     V+ AC  AGLL+ G   
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLGQ 121

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
               M  +  LV  +     L+ + G+ G VEEA  + + MP E N   W S++  
Sbjct: 122 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMP-ERNLVSWNSIICG 176


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 165/422 (39%), Positives = 242/422 (57%), Gaps = 38/422 (9%)

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           PD +T   VLKAC   + ++ G  IH    K+G   NLF  N ++ +YG CG + +A  +
Sbjct: 8   PDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLL 67

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE 247
              MP +D VTWN ++A  A+ G  D A                                
Sbjct: 68  FEKMPQRDAVTWNIVIAQLAKRGDIDGAYG------------------------------ 97

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                   FL++ NKN+ SW  MI+ +     P EA+DL++++E   + PN ++V SVL 
Sbjct: 98  -------FFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLA 150

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           AC DL  L LGR +H Y  +   + N+ + N L+DMY KCG L  AR VF +M  + VVS
Sbjct: 151 ACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVS 210

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W++MI+   M GQ  +A+ LFS+M+  G+ P+ + F+ +L ACSH GL++EGR +F  MT
Sbjct: 211 WSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMT 270

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
             Y ++P+IEH+ C+VDL  RAG +EEA++ I  MP++PN  +WG+L+  C ++ N+D+ 
Sbjct: 271 ADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLA 330

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQ 546
             A  H+  L P   GYYV++SNIYA+A RW D  RVRK M  +G+KK  G +S+ +N  
Sbjct: 331 EEAIKHLSELDPLNDGYYVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSITVNGV 390

Query: 547 VQ 548
           V 
Sbjct: 391 VH 392



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 136/306 (44%), Gaps = 42/306 (13%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           K  D+   K +H  +       SN  +   ++  YG CG+M D   +F+++  ++ V +N
Sbjct: 22  KLSDVVNGKTIHG-LFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLFEKMPQRDAVTWN 80

Query: 100 VLI------------------------RSYVNNYLYY-------DALHVYKNMSVHGFDP 128
           ++I                        RS+ +    +       +A+ ++  +      P
Sbjct: 81  IVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRP 140

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           +  T   VL AC+    L +G  +H    K G   N+   N L+ MY KCGCL+ ARRV 
Sbjct: 141 NEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVF 200

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
            +M  + VV+W++M+AG A +G+ +EAL +  EM  L +KP+  T   LL + ++     
Sbjct: 201 YEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGL-- 258

Query: 249 VLSVKEMFLKLDNK-----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
           +   +  F  +         +  +  ++ +++   +  EA +  L M    I+PN +   
Sbjct: 259 IDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMP---IKPNGVVWG 315

Query: 304 SVLPAC 309
           ++L  C
Sbjct: 316 ALLGGC 321



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 106/236 (44%), Gaps = 43/236 (18%)

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M +  + P+  + + VL AC  LS ++ G+ IH   ++     NL L+N ++++Y  CG 
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 350 LTEARTVFDQMRCQDVV-------------------------------SWTSMISAYGMS 378
           + +A  +F++M  +D V                               SWTSMIS +   
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           G+  +A+ LF K+    + P+ +  VSVL+AC+  G L+ GR   +  T+       +  
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKS-GFKRNVHV 179

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA----------ACCLYSNM 484
              L+D+  + G +E A  +  +M  E     W +++A          A CL+S M
Sbjct: 180 CNTLIDMYVKCGCLENARRVFYEME-ERTVVSWSAMIAGLAMHGQAEEALCLFSEM 234


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 179/540 (33%), Positives = 295/540 (54%), Gaps = 41/540 (7%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           L+ LHA + +     ++  +   L + Y    +  D R VFD + + + V +N L+    
Sbjct: 142 LRPLHA-LAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLS 200

Query: 107 NNYLYYDALHVYKNMSVHG-FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
            +    +AL  +  M+  G   PD  T   VL A +   +  +G  +H    K GL  + 
Sbjct: 201 GS----EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHE 256

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
               GL+++Y KCG ++ AR + + M   D+VT+N++++GY+ NG    ++++ +E+  +
Sbjct: 257 HVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGM 316

Query: 226 RIKPDADTMASLLPSVTNTSPE---------------------------------NVLSV 252
            ++P + T+ +L+P  +    E                                 ++ S 
Sbjct: 317 GLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSA 376

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           +  F  +  K + SWN MI+ YA N +   AV L+ QM+   + PN ++++S L AC  L
Sbjct: 377 RRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQL 436

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
            AL LG+ +H+ +  +KL+ N+ +  AL+DMY KCGS+ EAR +FD M  ++VVSW  MI
Sbjct: 437 GALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMI 496

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           S YG+ GQG +A+ L+  M+ + L P S  F+SVL ACSH GL++EG   F+ MT  Y +
Sbjct: 497 SGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGI 556

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP-NERIWGSLVAACCLYSNMDIGILAA 491
            P IEH  C+VDLLGRAG+++EA++LI + P       IWG+L+ AC ++ + D+  LA+
Sbjct: 557 TPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLAS 616

Query: 492 DHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
             +F L P  +GYYVLLSN+Y    ++ +   VR+   S+ + K PG + +E+ D+  + 
Sbjct: 617 QKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVF 676



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 7/155 (4%)

Query: 46  TLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           +L K   +II N+ L  N  +   L+  Y  CG + + R +FD + NKNVV +NV+I  Y
Sbjct: 440 SLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGY 499

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
             +    +AL +YK+M      P   T+  VL ACS    +  G  +  S+     DY +
Sbjct: 500 GLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTS---DYGI 556

Query: 166 FNG----NGLVAMYGKCGCLKEARRVLNDMPSKDV 196
             G      +V + G+ G LKEA  ++++ P   V
Sbjct: 557 TPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAV 591


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 169/532 (31%), Positives = 294/532 (55%), Gaps = 34/532 (6%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           P + T ++LHA  I N    S+  +G  ++  Y   G +VD R  F  + + NV   N +
Sbjct: 266 PCLSTARQLHAHAIKNV-FSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAM 324

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           +   V   L  +A+ +++ M+  G   D  +   V  AC+       GLQ+HC  VK G 
Sbjct: 325 MVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGF 384

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           D ++   N ++ +YGKC  L EA  V  +M  +D V+WN+++A   QN  +++ +    E
Sbjct: 385 DVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNE 444

Query: 222 MESLRIKPDADTMASLLPS---------------------------VTNTSPE------N 248
           M    ++PD  T  S+L +                           V++T  +       
Sbjct: 445 MLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGA 504

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           +   +++  ++  + LVSWN +I+ ++      EA   + +M   G++P+  + A+VL  
Sbjct: 505 ITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDT 564

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C +L+ + LG++IH  + ++++  +  + + LVDMYAKCG++ ++  +F++ R  D VSW
Sbjct: 565 CANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSW 624

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            +MI  Y + GQG +A+ +F +M  + + P+   FV+VL ACSH GLL++G  YF +MT 
Sbjct: 625 NAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTS 684

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
           +YKLVP++EHFAC+VD+LGR+   +EA + I+ MP+E +  +W +L++ C +  ++++  
Sbjct: 685 RYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQDVEVAE 744

Query: 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            AA ++  L P+ +  Y+LLSN+YA +G+W DV R R+ M    ++K PG S
Sbjct: 745 TAASNVLRLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQGRLRKEPGCS 796



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 206/443 (46%), Gaps = 38/443 (8%)

Query: 51  HAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYL 110
           HA  + +   H +      ++  Y   G       +F  + + +VV +N LI  Y  + +
Sbjct: 72  HAHGVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGM 131

Query: 111 YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG 170
           + +++ +   MS  G   D  T   +LK+C G + L +G+QIH   VK GL+ ++  G+ 
Sbjct: 132 FRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSA 191

Query: 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
           LV MYGKC  L +A R  + M  ++ V+W + +AG  QN ++   +++  +M+ L +   
Sbjct: 192 LVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVS 251

Query: 231 ADTMASLLPS--------------------------VTNTS-------PENVLSVKEMFL 257
               AS   S                          V  T+         N++  +  F+
Sbjct: 252 QPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFI 311

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
            L + N+ + N M+       + AEA+ L+  M   G+  + IS++ V  AC ++     
Sbjct: 312 GLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQ 371

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           G ++H    +     ++ + NA++D+Y KC +L EA  VF +M  +D VSW ++I+A   
Sbjct: 372 GLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQ 431

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
           +    D +A  ++ML SG+ PD   + SVL AC+    LE   Y   +  +  K    ++
Sbjct: 432 NECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLE---YGLVVHGKAIKSGLGLD 488

Query: 438 HF--ACLVDLLGRAGKVEEAYDL 458
            F  + +VD+  + G + EA  L
Sbjct: 489 AFVSSTVVDMYCKCGAITEAQKL 511



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 144/327 (44%), Gaps = 38/327 (11%)

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDV 196
           L A +G ++L  G   H  ++  G     F  N L+ MY +CG    A  V + MP +D 
Sbjct: 26  LCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDT 85

Query: 197 VTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMF 256
           V+WN+M+  Y   G                   D DT ASL                  F
Sbjct: 86  VSWNTMLTAYVHAG-------------------DTDTAASL------------------F 108

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
             + + ++VSWN +I+ Y  + M   +V L ++M   G+  +  ++A +L +CG L  L 
Sbjct: 109 GTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLA 168

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
           LG +IH    +  L+ ++R  +ALVDMY KC SL +A   F  M  ++ VSW + I+   
Sbjct: 169 LGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCV 228

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
            + Q    + LF +M   GL     A+ S   +C+    L   R       +      R+
Sbjct: 229 QNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRV 288

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMP 463
              A +VD+  +AG + +A      +P
Sbjct: 289 VGTA-IVDVYAKAGNLVDARRAFIGLP 314


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 175/501 (34%), Positives = 276/501 (55%), Gaps = 42/501 (8%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACS---G 142
           +FD +    +  +N ++RS+  +      L  Y  +  HG  PD +T+P +LKA S    
Sbjct: 60  LFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN 119

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
            N      Q +  +VK GLD++ F  N LV+ +  CG +  +RR+  +   KDVV+W ++
Sbjct: 120 ENPF----QFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTAL 175

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN---------------TSPE 247
           + G  +NGR  EAL+   EM S  ++ D  T+ S+L +                   S  
Sbjct: 176 INGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGR 235

Query: 248 NVLSVK-------------------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
            +  V                    ++F ++  +NLVSW  +IA Y   +   EA+ ++ 
Sbjct: 236 VIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQ 295

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           +M + GIEPN  +V S L AC  L +L  GR +H YV+R KL  N +L  ALVDMY+KCG
Sbjct: 296 EMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCG 355

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
            + EA  VF+++  +DV  WT+MI+   M G    ++ LFS+M+ S + P+ + F+ VLS
Sbjct: 356 CVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLS 415

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
           AC+H GL++EG   F++M   Y+L P ++H+ C+VDLLGRAG++EEA   I+ MPMEP  
Sbjct: 416 ACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTP 475

Query: 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
            +WG+L + C ++   ++G    +H+  L P+ SG Y+LL+N+Y++  +W     VR+ M
Sbjct: 476 GVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLM 535

Query: 529 NSKGIKKMPGAS-VEMNDQVQ 548
             KG+ K P  S +E+N  + 
Sbjct: 536 KGKGVDKSPACSWIEVNGVIH 556



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 152/326 (46%), Gaps = 35/326 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  +  CG +  +R +F E   K+VV +  LI   + N    +AL  +  M   G + D
Sbjct: 144 LVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVD 203

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGCLKEARRVL 188
             T   VL A +    +  G  +H   V+ G + ++++ G+ LV MY KCG   +A +V 
Sbjct: 204 EVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVF 263

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP--------- 239
           N+MP++++V+W +++AGY Q  R+ EAL V +EM    I+P+  T+ S L          
Sbjct: 264 NEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLD 323

Query: 240 -----------------SVTNTSPENVLS----VKE---MFLKLDNKNLVSWNVMIAVYA 275
                            S   T+  ++ S    V E   +F KL  K++  W  MI   A
Sbjct: 324 QGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLA 383

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY-VERKKLQPNL 334
                  +++L+ QM    ++PN ++   VL AC     +  G ++ R  +   +L+PN+
Sbjct: 384 MRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNV 443

Query: 335 RLENALVDMYAKCGSLTEARTVFDQM 360
                +VD+  + G L EA    + M
Sbjct: 444 DHYGCMVDLLGRAGRLEEAIKFIESM 469



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 137/304 (45%), Gaps = 9/304 (2%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y  CG   D   VF+E+  +N+V +  LI  YV    Y +AL V++ M + G
Sbjct: 242 VGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEG 301

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            +P+  T    L AC+   SL  G  +H  V +  L  N   G  LV MY KCGC+ EA 
Sbjct: 302 IEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEAL 361

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            V   +P+KDV  W +M+ G A  G    +L++  +M   R++P+  T   +L +  +  
Sbjct: 362 LVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGG 421

Query: 246 --PENVLSVKEMFLKLD-NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
              E +   + M        N+  +  M+ +        EA+     +E   +EP     
Sbjct: 422 LVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKF---IESMPMEPTPGVW 478

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV-DMYAKCGSLTEARTVFDQMR 361
            ++   C    A  LG  I  ++   KLQP+      L+ ++Y++C     A  V   M+
Sbjct: 479 GALFSGCMIHKAFELGEHIGNHL--IKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMK 536

Query: 362 CQDV 365
            + V
Sbjct: 537 GKGV 540



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 2/145 (1%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           N  +G  L+  Y  CG + +   VF+++  K+V  +  +I           +L+++  M 
Sbjct: 340 NSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMI 399

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQI-HCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
                P+  T+  VL AC+    +  GL++    +    L+ N+ +   +V + G+ G L
Sbjct: 400 RSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRL 459

Query: 182 KEARRVLNDMPSKDVV-TWNSMVAG 205
           +EA + +  MP +     W ++ +G
Sbjct: 460 EEAIKFIESMPMEPTPGVWGALFSG 484


>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 666

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 184/513 (35%), Positives = 292/513 (56%), Gaps = 38/513 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G+    + VFD +  + V+ +N +I  Y  N    DA++VY  M   G +PD
Sbjct: 154 LLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVGVEPD 213

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
           C T   VL AC    ++ +G ++H  V + G   N+   N LV MY KCG +KEA  +  
Sbjct: 214 CATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVRNALVDMYVKCGQMKEAWLLAK 273

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
            M  KDVVTW +++ GY  NG    AL +C  M+   +KP++ ++ASLL +         
Sbjct: 274 GMDDKDVVTWTTLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLSACGSLVYLNH 333

Query: 241 -----------------VTNTSPENV--------LSVKEMFLKLDNKNLVSWNVMIAVYA 275
                            +  T+  N+        LS K +F+    K    WN +++ + 
Sbjct: 334 GKCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYK-VFMGTSKKRTAPWNALLSGFI 392

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            N +  EA++L+ QM V  ++P+  +  S+LPA   L+ L     IH Y+ R      L 
Sbjct: 393 QNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQAMNIHCYLIRSGFLYRLE 452

Query: 336 LENALVDMYAKCGSLTEARTVFD--QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
           + + LVD+Y+KCGSL  A  +F+   ++ +D++ W+++I+AYG  G G  AV LF++M+ 
Sbjct: 453 VASILVDIYSKCGSLGYAHQIFNIISLKDKDIIIWSAIIAAYGKHGHGKMAVKLFNQMVQ 512

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           SG+ P+ + F SVL ACSHAGL+ EG   F  M +Q++++  ++H+ C++DLLGRAG++ 
Sbjct: 513 SGVKPNHVTFTSVLHACSHAGLVNEGFSLFNFMLKQHQIISHVDHYTCMIDLLGRAGRLN 572

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           +AY+LI+ MP+ PN  +WG+L+ AC ++ N+++G +AA   F L P  +G YVLL+ +YA
Sbjct: 573 DAYNLIRTMPITPNHAVWGALLGACVIHENVELGEVAARWTFKLEPENTGNYVLLAKLYA 632

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMND 545
             GRWGD +RVR  +N  G++K+P  S +E+ D
Sbjct: 633 AVGRWGDAERVRDMVNEVGLRKLPAHSLIEVRD 665



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 131/472 (27%), Positives = 235/472 (49%), Gaps = 39/472 (8%)

Query: 34  CNDILDKYPDIKT---LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI 90
           C  +L K+   ++    K+LHA +I+   + S+ ++  KL  TY  C       H+FD++
Sbjct: 14  CESLLGKFSASQSHSETKRLHA-LILTLGIFSSSNLCSKLATTYAQCHHASYASHLFDKL 72

Query: 91  TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD-PDCYTYPCVLKACSGSNSLLVG 149
           +   +  +N ++R YV     +DAL+++  M   G   PD +TYP V+KAC   + + VG
Sbjct: 73  SQPCLFSWNAMMRMYVQIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVG 132

Query: 150 LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQN 209
           + IH    K G D + F  N L+AMY   G  + A+ V + M  + V++WN+M+ GY +N
Sbjct: 133 VGIHGQTFKFGYDSDTFVQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRN 192

Query: 210 GRFDEALDVCREMESLRIKPDADTMASLLPSV----------------------TNTSPE 247
              ++A++V   M  + ++PD  T+ S+LP+                        N    
Sbjct: 193 NCAEDAVNVYGRMMDVGVEPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVR 252

Query: 248 NVL--------SVKEMFL---KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE 296
           N L         +KE +L    +D+K++V+W  +I  Y  N     A+ L   M+  G++
Sbjct: 253 NALVDMYVKCGQMKEAWLLAKGMDDKDVVTWTTLINGYILNGDARSALMLCGMMQCEGVK 312

Query: 297 PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTV 356
           PN++S+AS+L ACG L  L  G+ +H +  R+K++  + +E AL++MYAKC     +  V
Sbjct: 313 PNSVSIASLLSACGSLVYLNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYKV 372

Query: 357 FDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL 416
           F     +    W +++S +  +    +A+ LF +ML+  + PD   F S+L A +    L
Sbjct: 373 FMGTSKKRTAPWNALLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADL 432

Query: 417 EEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
           ++       +      + R+E  + LVD+  + G +  A+ +   + ++  +
Sbjct: 433 QQAMNIHCYLIRS-GFLYRLEVASILVDIYSKCGSLGYAHQIFNIISLKDKD 483



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 20/321 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K LHA  I  Q + S   +   L+  Y  C     +  VF   + K    +N L+  ++ 
Sbjct: 335 KCLHAWAI-RQKIESEVIVETALINMYAKCNCGNLSYKVFMGTSKKRTAPWNALLSGFIQ 393

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N L  +A+ ++K M V    PD  T+  +L A +    L   + IHC +++ G  Y L  
Sbjct: 394 NRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQAMNIHCYLIRSGFLYRLEV 453

Query: 168 GNGLVAMYGKCGCLKEARRVLN--DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
            + LV +Y KCG L  A ++ N   +  KD++ W++++A Y ++G    A+ +  +M   
Sbjct: 454 ASILVDIYSKCGSLGYAHQIFNIISLKDKDIIIWSAIIAAYGKHGHGKMAVKLFNQMVQS 513

Query: 226 RIKPDADTMASLLPSVTNTSPENV-LSVKEMFLKLDN--KNLVSWNVMIAVYANNSMPAE 282
            +KP+  T  S+L + ++    N   S+    LK      ++  +  MI +        +
Sbjct: 514 GVKPNHVTFTSVLHACSHAGLVNEGFSLFNFMLKQHQIISHVDHYTCMIDLLGRAGRLND 573

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA--- 339
           A +L   M    I PN     ++L AC     + LG    R+    KL+P    EN    
Sbjct: 574 AYNLIRTMP---ITPNHAVWGALLGACVIHENVELGEVAARWT--FKLEP----ENTGNY 624

Query: 340 --LVDMYAKCGSLTEARTVFD 358
             L  +YA  G   +A  V D
Sbjct: 625 VLLAKLYAAVGRWGDAERVRD 645


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 179/503 (35%), Positives = 278/503 (55%), Gaps = 43/503 (8%)

Query: 88  DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLL 147
           D     NV  FN +I  ++ N    +    Y+ M   G  PD +T+PC +KAC     +L
Sbjct: 97  DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACL---DVL 153

Query: 148 VGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA 207
              +IH  + K GL+ ++F G+ LV  Y K G ++ A+    ++P +DVV WN+MV GYA
Sbjct: 154 EIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYA 213

Query: 208 QNGRFDEALDVCREMESLRIKPDADTMASLLP---------------------------S 240
           Q G+F+  L+  R M    + P   T+   L                            +
Sbjct: 214 QIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVA 273

Query: 241 VTNTSPENVLSVK------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
           V+N+  +     K      E+F  +  K++ SWN +++V+         + L  +M   G
Sbjct: 274 VSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAG 333

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYV------ERKKLQPNLRLENALVDMYAKCG 348
           I+P+ ++V +VLPAC  L+AL+ GR+IH Y+      +  K   ++ L+NA++DMYAKCG
Sbjct: 334 IQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCG 393

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
           S+ +A  VF++M  +DV SW  MI  YGM G G +A+ +FS+M    L PD + FV VLS
Sbjct: 394 SMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLS 453

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
           ACSHAG + +GR +   M  +Y + P IEH+ C++D+LGRAG+++EAY+L   MP+E N 
Sbjct: 454 ACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANP 513

Query: 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
            +W +L+AAC L+ +  +  +AA  +F L P   G YVL+SN+Y   GR+ +V  VR  M
Sbjct: 514 VVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTM 573

Query: 529 NSKGIKKMPGAS-VEMNDQVQII 550
             + ++K PG S +E+ + V + 
Sbjct: 574 RQQNVRKTPGCSWIELKNGVHVF 596



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 173/383 (45%), Gaps = 49/383 (12%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC D+L+       +KK+H  ++    L  +  IG  L+  Y   G M   +  F+E+  
Sbjct: 148 ACLDVLE-------IKKIHG-LLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPI 199

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           ++VV +N ++  Y     +   L  ++ M+     P  +T    L   +    L  G  I
Sbjct: 200 RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRII 259

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H   +K+G D  +   N L+ MYGKC C+++A  +   M  KD+ +WNS+V+ + Q G  
Sbjct: 260 HGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDH 319

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSP-----------------------ENV 249
           D  L +   M    I+PD  T+ ++LP+ ++ +                        ++V
Sbjct: 320 DGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDV 379

Query: 250 L---SVKEM-------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
           L   +V +M             F ++ NK++ SWN+MI  Y  +    EA++++ +M   
Sbjct: 380 LLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEV 439

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTE 352
            ++P+ ++   VL AC     +  GR     ++ K  + P +     ++DM  + G L E
Sbjct: 440 QLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDE 499

Query: 353 ARTVFDQMRCQ-DVVSWTSMISA 374
           A  +   M  + + V W ++++A
Sbjct: 500 AYELALTMPIEANPVVWRALLAA 522



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 143/317 (45%), Gaps = 21/317 (6%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S  ++   L+  YG C  + D   +F+ +  K++  +N ++  +     +   L +   M
Sbjct: 270 SGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRM 329

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN------LFNGNGLVAMY 175
              G  PD  T   VL ACS   +L+ G +IH  ++  GL  +      +   N ++ MY
Sbjct: 330 LGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMY 389

Query: 176 GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA 235
            KCG +++A  V   M +KDV +WN M+ GY  +G  +EAL++   M  +++KPD  T  
Sbjct: 390 AKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFV 449

Query: 236 SLLPSVTNTSPENVLSVKEMFLKLDNKNLVS-----WNVMIAVYANNSMPAEAVDLYLQM 290
            +L + ++     V   +   +++ +K  V+     +  +I +        EA +L L M
Sbjct: 450 GVLSACSHAG--FVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTM 507

Query: 291 EVHGIEPNAISVASVLPACG-DLSALLLGRKIHRYVERKKLQPNLRLENALV-DMYAKCG 348
               IE N +   ++L AC     A+L      R  E   L+P       L+ ++Y   G
Sbjct: 508 P---IEANPVVWRALLAACRLHKHAVLAEVAAQRVFE---LEPEHCGSYVLMSNVYGAVG 561

Query: 349 SLTEARTVFDQMRCQDV 365
              E   V   MR Q+V
Sbjct: 562 RYEEVLEVRHTMRQQNV 578


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 180/545 (33%), Positives = 289/545 (53%), Gaps = 42/545 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+K  + LHA I+  + L  +  +G  L+  Y  C  +   R  FDE+  K +V +N LI
Sbjct: 73  DLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALI 132

Query: 103 RSYVNNYLYYDALHVYKNM---SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
             Y  N  +  AL +Y++M   S  G  PD  T+   L AC+    +  G +I    V  
Sbjct: 133 AGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVAS 192

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G   +    N L+ MY KCG L+ AR+V + + ++DV+ WN+M++GYA+ G   +AL++ 
Sbjct: 193 GYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELF 252

Query: 220 REMESLRIKPDADTMASLLPSVTNTSP----------------------ENVL------- 250
           + M     KP+  T   LL + TN                          NVL       
Sbjct: 253 QRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKC 312

Query: 251 -----SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                  +++F ++  +++++WN++I  Y       +A+D++ QM++  + PN I++++V
Sbjct: 313 SSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNV 372

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L AC  L A   G+ +H  +   + + ++ LEN+L++MY +CGSL +   VF  +R + +
Sbjct: 373 LSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSL 432

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           VSW+++I+AY   G     +  F ++L  GL  D +  VS LSACSH G+L+EG   F  
Sbjct: 433 VSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLS 492

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M   + L P   HF C+VDLL RAG++E A +LI  MP  P+   W SL++ C L+++  
Sbjct: 493 MVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTK 552

Query: 486 IGILAADHIFHL-APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEM 543
                AD +F L + ++     LLSN+YA+AGRW DV++ R   N +  +K PG S +E+
Sbjct: 553 RAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTR---NRRAARKNPGCSYIEI 609

Query: 544 NDQVQ 548
           ND V 
Sbjct: 610 NDTVH 614



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 135/463 (29%), Positives = 241/463 (52%), Gaps = 45/463 (9%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           YG CG + D   VF  I + N V + +++ ++  N  Y +AL  Y+ M + G  PD   +
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
              +  CS S  L  G  +H  +++   L++++  G  L+ MY +C  L+ AR+  ++M 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR---IKPDADTMASLLPSVT------- 242
            K +VTWN+++AGY++NG    AL + ++M S     +KPDA T +S L + T       
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQ 181

Query: 243 ---------------NTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYAN 276
                          ++  +N L           S +++F +L N+++++WN MI+ YA 
Sbjct: 182 GREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAK 241

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
                +A++L+ +M  +  +PN ++   +L AC +L  L  GR IHR V     + +L +
Sbjct: 242 QGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVI 301

Query: 337 ENALVDMYAKC-GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
            N L++MY KC  SL EAR VF++MR +DV++W  +I AY   GQ  DA+ +F +M +  
Sbjct: 302 GNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLEN 361

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           + P+ I   +VLSAC+  G   +G+  +  I + + K    +E+   L+++  R G +++
Sbjct: 362 VAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLEN--SLMNMYNRCGSLDD 419

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHL 497
              +   +  + +   W +L+AA   + +   G+   +H + L
Sbjct: 420 TVGVFAAI-RDKSLVSWSTLIAAYAQHGHSRTGL---EHFWEL 458



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 177/379 (46%), Gaps = 73/379 (19%)

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MYGKCG + +A  V + +   + V+W  +VA +A+NG + EAL   R M    ++PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDG-A 59

Query: 234 MASLLPSVTNTSPE-----------------------------------NVLSVKEMFLK 258
           M  +   V ++S +                                   ++   ++ F +
Sbjct: 60  MFVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM---EVHGIEPNAISVASVLPACGDLSAL 315
           +  K LV+WN +IA Y+ N     A+ +Y  M      G++P+AI+ +S L AC  +  +
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDI 179

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             GR+I           +  ++NAL++MY+KCGSL  AR VFD+++ +DV++W +MIS Y
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK----------- 424
              G    A+ LF +M  +   P+ + F+ +L+AC++   LE+GR   +           
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDL 299

Query: 425 ---------------IMTEQYKLVPRIE-----HFACLVDLLGRAGKVEEAYDLIKQMPM 464
                           + E  ++  R+       +  L+    + G+ ++A D+ KQM +
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQL 359

Query: 465 E---PNERIWGSLVAACCL 480
           E   PNE    ++++AC +
Sbjct: 360 ENVAPNEITLSNVLSACAV 378


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 173/474 (36%), Positives = 268/474 (56%), Gaps = 40/474 (8%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +FD I    V  +N LI++Y ++  ++    +Y  M + G  P+ +++  +  AC+  +S
Sbjct: 38  LFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSS 97

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
              G  +H   VK G   ++F    LV MY K G L  AR+  ++M  +DV TWNSM+AG
Sbjct: 98  HQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAG 157

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           YA+ G  + AL++ R                L+P+                     +N+ 
Sbjct: 158 YARCGDLEGALELFR----------------LMPA---------------------RNVT 180

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRY 324
           SW  MI+ YA N   A+A+ ++L ME    + PN +++ASVLPAC +L AL +G +I  Y
Sbjct: 181 SWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVY 240

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYD 383
                   NL + NAL++MYA+CG + +A  VF+++  + ++ SW SMI    + G+  +
Sbjct: 241 ARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDE 300

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV 443
           A+ LF KML  G  PD + FV VL AC+H G++ EG+++F+ M   + + P++EH+ C+V
Sbjct: 301 AIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMV 360

Query: 444 DLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503
           DLLGRAG++ EA+DLI +MPMEP+  +WG+L+ AC  + ++++   AA  +F L P+  G
Sbjct: 361 DLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFHGHVELAEKAAGALFELEPSNPG 420

Query: 504 YYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
            YV+LSNIYA AGRW  V R+RK M    I K  G S +E    +    +  RS
Sbjct: 421 NYVILSNIYATAGRWDGVARLRKLMKGGKITKAAGYSFIEEGGHIHKFIVEDRS 474



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 114/247 (46%), Gaps = 12/247 (4%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDP 128
           ++  Y  CG +     +F  +  +NV  +  +I  Y  N  Y  AL ++  M       P
Sbjct: 154 MIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRP 213

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           +  T   VL AC+   +L VG +I       G   NL+  N L+ MY +CG + +A  V 
Sbjct: 214 NEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVF 273

Query: 189 NDMPS-KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE 247
            ++   +++ +WNSM+ G A +GR DEA+++  +M      PD  T   +L + T+    
Sbjct: 274 EEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGG-- 331

Query: 248 NVLSVKEMFLKLDNK-----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
            V+  +  F  ++        L  +  M+ +        EA DL L+M    +EP+++  
Sbjct: 332 MVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMP---MEPDSVVW 388

Query: 303 ASVLPAC 309
            ++L AC
Sbjct: 389 GTLLGAC 395



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 71/149 (47%), Gaps = 3/149 (2%)

Query: 70  LMRTYGACGQMVDTRHVFDEITN-KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
           L+  Y  CG++     VF+EI   +N+  +N +I     +    +A+ ++  M   G  P
Sbjct: 256 LLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAP 315

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           D  T+  VL AC+    ++ G     S+ +   +   L +   +V + G+ G L+EA  +
Sbjct: 316 DDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDL 375

Query: 188 LNDMPSK-DVVTWNSMVAGYAQNGRFDEA 215
           +  MP + D V W +++   + +G  + A
Sbjct: 376 ILRMPMEPDSVVWGTLLGACSFHGHVELA 404



 Score = 42.7 bits (99), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 92/204 (45%), Gaps = 17/204 (8%)

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           ++I  Y  R  ++   +L  +L+ +     S+  A  +FD +    V  +  +I AY   
Sbjct: 5   KQIQAYTLRNGIEHTKQLIVSLLQI----PSIPYAHKLFDFIPKPTVFLYNKLIQAYSSH 60

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           G  +   +L+++M + G  P+  +F  + SAC+     ++GR    + T   K     + 
Sbjct: 61  GPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRM---LHTHFVKSGFGCDV 117

Query: 439 FA--CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           FA   LVD+  + G +  A     +M +  +   W S++A      +++     A  +F 
Sbjct: 118 FALTALVDMYAKLGLLSLARKQFDEMTVR-DVPTWNSMIAGYARCGDLE----GALELFR 172

Query: 497 LAP--NQSGYYVLLSNIYAKAGRW 518
           L P  N + +  ++S  YA+ G++
Sbjct: 173 LMPARNVTSWTAMISG-YAQNGQY 195


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 184/530 (34%), Positives = 287/530 (54%), Gaps = 41/530 (7%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           LK++HAQ++IN    S P     L +       +     VF+++T  N+  FNV++R   
Sbjct: 49  LKQIHAQMLIN----SIPKPNFLLSKIID-LKDLAYASLVFNQLTKPNIYAFNVMLRGLA 103

Query: 107 NNYLYYD-ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
             +  YD  + +Y  +   G   + +TYP +  AC     L+ G   HC V K GLD + 
Sbjct: 104 TTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDE 163

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           +  + L+ MY +CG +  AR+V ++M  +D+V+WNSM++GY++ G   EA+ +  EM   
Sbjct: 164 YVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREE 223

Query: 226 RIKPDADTMASLLPSVTNTSP---------------------------------ENVLSV 252
             +PD  T+ S+L +  +                                     +++S 
Sbjct: 224 GFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISA 283

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           + +F  + NK++V+WN +I  YA N    EA+ L+  M   G  P+ +++  VL AC  +
Sbjct: 284 RRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTI 343

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
            AL LG+ +  +   K LQ ++ + +AL+DMYAKCGSL +A  VF+ M  ++ VSW +MI
Sbjct: 344 GALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMI 403

Query: 373 SAYGMSGQGYDAVALFSKMLMSG--LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           SA    GQ  +A++LF +M      + P+ I F+ VLSAC HAGL++EGR  F+ M   +
Sbjct: 404 SALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSF 463

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            LVP++EH++C+VDL  RAG + EA+DLIK+MP +P+E + GSL+ AC    N D+G   
Sbjct: 464 GLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERV 523

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
                 +  + SG YV+ S IYA   RW D  ++R  M   G+ K PG S
Sbjct: 524 IQLFLEMELSNSGNYVISSKIYANMRRWDDSAKMRVLMRQCGVSKTPGCS 573


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 176/477 (36%), Positives = 269/477 (56%), Gaps = 39/477 (8%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV-H 124
           +G  L+  Y     + D   VFDE+  ++VV +  L+  Y    L  +A  ++  M V  
Sbjct: 180 VGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVG 239

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G  P+  T    + A      L  G+ +H  V + G+  ++   N LV M+GKCGC++ A
Sbjct: 240 GMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYA 299

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           R V + M  KDV +W SMV  YA+          C ++ES                    
Sbjct: 300 REVFDGMEVKDVYSWTSMVNAYAK----------CGDLES-------------------- 329

Query: 245 SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
                   +++F  +  +N+VSW+ MIA Y+  + P EAV L+ +M   G++P   ++ S
Sbjct: 330 -------AEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVS 382

Query: 305 VLPACGDLSALLLGRKIHR-YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           VL AC  L  L LGR I+  Y+   K+   + L NAL+DM+AKCG + EA  +FD+M  +
Sbjct: 383 VLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAER 442

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           +VVSW +MI A+ + GQ  +A+ LF ++    + PD I F+ +L++CSH+GL+ EGR YF
Sbjct: 443 NVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYF 502

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
           K M   Y++ PR+EH+AC++DLLG+ G +EEA+++ + MPME +E  WG+L+ AC ++ N
Sbjct: 503 KEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGN 562

Query: 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           ++IG   AD +  L P+ SG YVL+S IYA   +W  VK +R  M  +G+KK PG S
Sbjct: 563 VEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCS 619



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 77/158 (48%), Gaps = 2/158 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           + ++   I++  +    ++G  L+  +  CG + +   +FDE+  +NVV +N +I ++  
Sbjct: 397 RWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAV 456

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV-VKVGLDYNLF 166
           +    +A+ +++ +      PD  T+  +L +CS S  +  G +    + +   ++  + 
Sbjct: 457 HGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVE 516

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMV 203
           +   ++ + GK G L+EA  V   MP   D   W +++
Sbjct: 517 HYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALL 554


>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 176/525 (33%), Positives = 301/525 (57%), Gaps = 26/525 (4%)

Query: 23  STQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACG--QM 80
           +T ++ +  +    +L+K   I  LK++ +Q+++   +      G    R    C   + 
Sbjct: 42  NTNHSFVLSNPFLSLLEKCKSISQLKQIQSQMVLTGLIED----GFASSRLIAFCAISEW 97

Query: 81  VDTRH---VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKN-MSVHGFDPDCYTYPCV 136
            D  +   +     N N   +NV IR ++++    +A+ +YK  +   G  PD YTYP +
Sbjct: 98  RDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLL 157

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDV 196
            KAC+  + + +G +I   V+ +G D ++F  N ++ +   CG L  AR++ +    +D+
Sbjct: 158 FKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDL 217

Query: 197 VTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA---DTMASLLPSVTNTSPENVLSVK 253
           V+WNSM+ GY            C  +ES R   D+    TM S    V   +   +L + 
Sbjct: 218 VSWNSMINGY------------CGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMA 265

Query: 254 -EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
            ++F ++ +K++V WN MI  Y + +   EA+ L+ +M+   I P+ +++ S L AC  L
Sbjct: 266 WKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQL 325

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
            AL +G  IH Y+E+ +L  N+ L  AL+DMYAKCG +T+A  VF ++  ++ ++WT++I
Sbjct: 326 GALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAII 385

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           S   + G  + A+A FS+M+ + + PD + F+ +LSAC H GL+EEGR YF  M+ ++ L
Sbjct: 386 SGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNL 445

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAAD 492
            P+++H++C+VDLLGRAG +EEA +LIK MP+E +  +WG+L  AC ++ N+ +G  AA 
Sbjct: 446 SPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAAS 505

Query: 493 HIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
            +  + P+ SG YVLL+N+Y +A  W +  + RK M  +G++K P
Sbjct: 506 KLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTP 550


>gi|15238469|ref|NP_200768.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170472|sp|Q9FGR2.1|PP436_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g59600
 gi|10177776|dbj|BAB11040.1| unnamed protein product [Arabidopsis thaliana]
 gi|71143062|gb|AAZ23922.1| At5g59600 [Arabidopsis thaliana]
 gi|332009827|gb|AED97210.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 534

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 175/474 (36%), Positives = 282/474 (59%), Gaps = 3/474 (0%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           LHA ++ +  +     I  KL+  Y  CG+++D R VFDE+  +++    V+I +   N 
Sbjct: 38  LHAHLVTSG-IARLTRIAAKLVTFYVECGKVLDARKVFDEMPKRDISGCVVMIGACARNG 96

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
            Y ++L  ++ M   G   D +  P +LKA         G  IHC V+K   + + F  +
Sbjct: 97  YYQESLDFFREMYKDGLKLDAFIVPSLLKASRNLLDREFGKMIHCLVLKFSYESDAFIVS 156

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            L+ MY K G +  AR+V +D+  +D+V +N+M++GYA N + DEAL++ ++M+ L IKP
Sbjct: 157 SLIDMYSKFGEVGNARKVFSDLGEQDLVVFNAMISGYANNSQADEALNLVKDMKLLGIKP 216

Query: 230 DADTMASLLPSVTNTSPENVLSVKEMFLKLDN--KNLVSWNVMIAVYANNSMPAEAVDLY 287
           D  T  +L+   ++   E  +S     + LD    ++VSW  +I+   +N    +A D +
Sbjct: 217 DVITWNALISGFSHMRNEEKVSEILELMCLDGYKPDVVSWTSIISGLVHNFQNEKAFDAF 276

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
            QM  HG+ PN+ ++ ++LPAC  L+ +  G++IH Y     L+ +  + +AL+DMY KC
Sbjct: 277 KQMLTHGLYPNSATIITLLPACTTLAYMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGKC 336

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           G ++EA  +F +   +  V++ SMI  Y   G    AV LF +M  +G   D + F ++L
Sbjct: 337 GFISEAMILFRKTPKKTTVTFNSMIFCYANHGLADKAVELFDQMEATGEKLDHLTFTAIL 396

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
           +ACSHAGL + G+  F +M  +Y++VPR+EH+AC+VDLLGRAGK+ EAY++IK M MEP+
Sbjct: 397 TACSHAGLTDLGQNLFLLMQNKYRIVPRLEHYACMVDLLGRAGKLVEAYEMIKAMRMEPD 456

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
             +WG+L+AAC  + NM++  +AA H+  L P  SG  +LL+++YA AG W  V
Sbjct: 457 LFVWGALLAACRNHGNMELARIAAKHLAELEPENSGNGLLLTSLYANAGSWESV 510



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 51/109 (46%)

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           S   ++ A G       GR +H ++    +    R+   LV  Y +CG + +AR VFD+M
Sbjct: 18  SYVELIEANGRDRLFCRGRVLHAHLVTSGIARLTRIAAKLVTFYVECGKVLDARKVFDEM 77

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
             +D+     MI A   +G   +++  F +M   GL  D+    S+L A
Sbjct: 78  PKRDISGCVVMIGACARNGYYQESLDFFREMYKDGLKLDAFIVPSLLKA 126


>gi|449450760|ref|XP_004143130.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Cucumis sativus]
 gi|449496662|ref|XP_004160192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Cucumis sativus]
          Length = 547

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 183/503 (36%), Positives = 293/503 (58%), Gaps = 8/503 (1%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   + LHA++II+           K +  Y ACG++ D R +FD+I   N   + VLI
Sbjct: 43  DLNFGRSLHARLIIDGSARLT-HFAAKFIAFYAACGKIKDARILFDKIPRTNPRRWIVLI 101

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            +Y     Y +AL V+  +   G  P  Y  P VLKAC   +    G ++H  ++K  L+
Sbjct: 102 GAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLE 161

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            + +  + L+ MY K G +++ARRV   M  KD+V  N+MV+GYA +G  +EAL++  EM
Sbjct: 162 SDAYVCSALIDMYAKSGEVEKARRVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEM 221

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD----NKNLVSWNVMIAVYANNS 278
           + L IKP+  T  +L+   +    E +  V+E+F +++      ++VSW  +I+ +  N 
Sbjct: 222 QVLGIKPNLVTWNTLVTGFSQIGEEEM--VRELFKEMEANGIEPDVVSWTSVISGFVQNF 279

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
              EA D + +M   G  P + +++S+LPAC  +     G++IH +     ++ ++ +  
Sbjct: 280 RNEEAFDTFRRMLNAGFHPTSATISSLLPACASVGNGRCGKEIHGHSLALGVEKDVYVRT 339

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           ALVDMYAKCG   EA+ +F +M  ++  +W SMI  Y   G   +A+ LF +M       
Sbjct: 340 ALVDMYAKCGYFYEAKILFWRMSERNSATWNSMIFGYANHGYCNEAIELFHQMKDDDEKK 399

Query: 399 -DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
            D + F ++L+AC+HAGL++ GR  F++M  +Y +VPR+EH+AC+VD+ GRAGK+ EAYD
Sbjct: 400 LDHLTFTAILTACAHAGLVDLGRSLFQLMQSKYGIVPRVEHYACMVDVFGRAGKLAEAYD 459

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
           LIK MP++P+  +WG+L+ AC  +  +++   AA H+  L P   G  +LLS+IYA AG 
Sbjct: 460 LIKTMPVKPDLYVWGALLGACRKHGEIELAEEAAKHLSELEPGSVGNSLLLSDIYANAGS 519

Query: 518 WGDVKRVRKFMNSKGIKKMPGAS 540
           WG V +++K M  + +KK PG S
Sbjct: 520 WGHVVKLKKMMKKRKMKKFPGCS 542


>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
 gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
 gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
 gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
 gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 531

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 171/512 (33%), Positives = 281/512 (54%), Gaps = 46/512 (8%)

Query: 46  TLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           +   +H  ++    LH    +   L+  Y A G     R +FDE+  + +V    + R++
Sbjct: 28  SASSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAH 87

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLV----GLQIHCSVVKVGL 161
           V +     A+ V+ +M   G  PD       L AC G+ S       G +IH  +V  G+
Sbjct: 88  VASGQAAQAIAVFGDMVADGVFPDNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGI 147

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           + ++F    L+ +YG+CG L  +RRV +DMPS+  +TWN+M+  YA++G+ D A      
Sbjct: 148 EPDVFVSTELIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAY----- 202

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
                                           E+FL +  +++VSWN ++A Y       
Sbjct: 203 --------------------------------ELFLAMPRRDVVSWNTVMAGYCVAGRCR 230

Query: 282 EAVDLYLQM---EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
           EA+ L+ QM       + PN  +++++L AC     L  G  +H Y+ER ++  +  L+ 
Sbjct: 231 EALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDR 290

Query: 339 ALVDMYAKCGSLTEARTVFDQM-RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
            L+DMY KCGS+  A  VF++  R +D+ SWT++I    M G+  DA+ +F  M  +G+C
Sbjct: 291 CLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGIC 350

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
           PD +  V VL+AC+H GL++EG  YF  M  ++++ P+IEH+ C++DLLGR G+++EAY 
Sbjct: 351 PDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYS 410

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
           +I+ MPM+PN  IWG+ ++AC ++ NM++G +AA+ +  L P+     V+LS++YAKA  
Sbjct: 411 MIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQD 470

Query: 518 WGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           W  + R R+ MNS  +KK PG +S+E+  +V 
Sbjct: 471 WIGLARERREMNSMQVKKTPGCSSIELKGEVH 502


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 176/537 (32%), Positives = 294/537 (54%), Gaps = 37/537 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H   ++ + L  +  +G  LM  YG C  +   R VFD++  ++VV ++ +IRS   
Sbjct: 114 KEIHG-FVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSR 172

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF- 166
           N  +  AL + + M+     P       ++   + + ++ +G  +H  V++   + ++  
Sbjct: 173 NKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGV 232

Query: 167 -NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
                L+ MY KCG L  AR++ N +  K VV+W +M+AG  ++ R +E   +   M+  
Sbjct: 233 PTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEE 292

Query: 226 RIKPDADTMASLLPSVTNTSP---------------------------------ENVLSV 252
            I P+  TM SL+     T                                    ++ + 
Sbjct: 293 NIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNA 352

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           + +F    N++++ W  M++ YA  +   +A +L+ QM   G+ P  +++ S+L  C   
Sbjct: 353 RALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVA 412

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
            AL LG+ +H Y+++++++ +  L  ALVDMYAKCG +  A  +F +   +D+  W ++I
Sbjct: 413 GALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAII 472

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           + + M G G +A+ +F++M   G+ P+ I F+ +L ACSHAGL+ EG+  F+ M   + L
Sbjct: 473 TGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGL 532

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAAD 492
           VP+IEH+ C+VDLLGRAG ++EA+++IK MP++PN  +WG+LVAAC L+ N  +G LAA 
Sbjct: 533 VPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAAT 592

Query: 493 HIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV-EMNDQVQ 548
            +  + P   GY VL+SNIYA A RW D   VRK M + G+KK PG SV E+N  V 
Sbjct: 593 QLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVH 649



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 126/415 (30%), Positives = 209/415 (50%), Gaps = 39/415 (9%)

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
           +  P VLKAC   +   +G +IH  V+K GLD ++F GN L+ MYG+C C++ AR V + 
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS----- 245
           M  +DVV+W++M+   ++N  FD AL++ REM  ++++P    M S++    +T+     
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214

Query: 246 ------------------PENVLSV------------KEMFLKLDNKNLVSWNVMIAVYA 275
                             P     +            +++F  L  K +VSW  MIA   
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCI 274

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            ++   E   L+++M+   I PN I++ S++  CG   AL LG+++H Y+ R     +L 
Sbjct: 275 RSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLA 334

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           L  ALVDMY KC  +  AR +FD  + +DV+ WT+M+SAY  +     A  LF +M  SG
Sbjct: 335 LATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSG 394

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + P  +  VS+LS C+ AG L+ G++    + ++   V  I + A LVD+  + G +  A
Sbjct: 395 VRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTA-LVDMYAKCGDINAA 453

Query: 456 YDLIKQMPMEPNERIWGSLVAACCL--YSNMDIGILAADHIFHLAPNQSGYYVLL 508
             L  +  +  +  +W +++    +  Y    + I A      + PN   +  LL
Sbjct: 454 GRLFIE-AISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLL 507


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  327 bits (839), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 272/469 (57%), Gaps = 12/469 (2%)

Query: 87  FDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL 146
           + ++   NV  +N +I+ +V +Y    AL +Y  M      P  YT+P ++KAC   + L
Sbjct: 37  YTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQL 96

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY 206
                +H  V + G D ++F    LV  Y   G ++E+ RV ++MP +DV  W +MV+G 
Sbjct: 97  RFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGL 156

Query: 207 AQNGRFDEALDVCREMESLRIKPDAD--TMASLLPSVTNTSPENVLSVKEMFLKLDNKNL 264
            + G      D+        + PD +  T  +L+         +V  +  +F ++  +++
Sbjct: 157 VRVG------DMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAEL--LFNQMPARDI 208

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           +SW  MI  Y+ N    EA+ ++ +M  HGI P+ +++A+V+ AC  L AL LG++IH Y
Sbjct: 209 ISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYY 268

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
           + +     ++ + +AL+DMYAKCGSL  +  +F ++R +++  W S+I    + G   +A
Sbjct: 269 IMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEA 328

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           +A+F KM    + P+ + FVSVLSAC+HAGL+EEGR  F  MT  + + P +EH+ C+VD
Sbjct: 329 LAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVD 388

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY 504
           LL +AG +EEA  LI+ M +EPN  IWG+L++ C L+ N++I  +AA+ +  L P  SGY
Sbjct: 389 LLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLEPGNSGY 448

Query: 505 YVLLSNIYAKAGRWGDVKRVRKFMNSKGI-KKMPGAS-VEMNDQVQIIA 551
           Y LL N+ A+  RWG+  ++R  M  +G+ K+ PG+S +EM  QV   A
Sbjct: 449 YTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQVHQFA 497



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 164/345 (47%), Gaps = 46/345 (13%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +F+++  ++++ +  +I  Y  N  + +AL V+  M+ HG  PD  T   V+ AC+   +
Sbjct: 199 LFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGA 258

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           L +G +IH  +++ G + +++ G+ L+ MY KCG L  +  +   +  K++  WNS++ G
Sbjct: 259 LDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEG 318

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
            A +G  +EAL +  +ME  +IKP+  T  S+L +  +     +   ++ F  +   + +
Sbjct: 319 LAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGL--IEEGRKRFASMTRDHSI 376

Query: 266 -----SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
                 +  M+ + +   +  EA+ L   M+   +EPNA+   ++L  C          K
Sbjct: 377 PPGVEHYGCMVDLLSKAGLLEEALQLIRTMK---LEPNAVIWGALLSGC----------K 423

Query: 321 IHRYVERKKLQPN--LRLE-------NALVDMYAKCGSLTEARTVFDQMRCQDV------ 365
           +HR +E  ++  N  + LE         LV+M A+     EA  +   M+ Q V      
Sbjct: 424 LHRNLEIAQVAANKLMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPG 483

Query: 366 VSWTSMIS----------AYGMSGQGYDAVA-LFSKMLMSGLCPD 399
            SW  M S          ++  S + Y  +A L  +M ++G  P+
Sbjct: 484 SSWIEMESQVHQFAASDKSHAASDEIYSLLAELDGQMKLAGYVPE 528



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 79/164 (48%), Gaps = 11/164 (6%)

Query: 48  KKLHAQIIINQH-LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           K++H  I+  QH  + +  IG  L+  Y  CG +  +  +F ++  KN+  +N +I    
Sbjct: 263 KEIHYYIM--QHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLA 320

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
            +    +AL ++  M      P+  T+  VL AC+ +  +  G +   S+ +   D+++ 
Sbjct: 321 VHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTR---DHSIP 377

Query: 167 NG----NGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAG 205
            G      +V +  K G L+EA +++  M    + V W ++++G
Sbjct: 378 PGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSG 421


>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 513

 Score =  327 bits (839), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 180/509 (35%), Positives = 293/509 (57%), Gaps = 42/509 (8%)

Query: 45  KTLKKLHAQIIINQHLHSNPS-IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           K L ++ AQ+I N  L  +P+ I +KL+    A   +   + +F ++ N NV  +N +I+
Sbjct: 25  KQLLQIQAQLITNPPLSLHPNLIAVKLIGACAANANLYHAQLIFAQLPNPNVFSWNAIIK 84

Query: 104 SYVNNYLYYDALHVY-KNMSV-HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           +++N   +  AL+ + + +S+    +P+ Y Y  ++KAC+G  ++  GL++H  V+K GL
Sbjct: 85  AHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKACAGLEAIADGLKVHAVVIKSGL 144

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           D N+  G  LV MY K      A +V ++MP +DVV+WN+MV+GY           +C +
Sbjct: 145 DNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVSWNTMVSGYC----------LCGD 194

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
           +ES R                            +F ++  ++++SWN MI  Y  N   +
Sbjct: 195 LESAR---------------------------RVFDQMLERDVISWNAMIGGYVQNGKYS 227

Query: 282 EAVDLYLQME-VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
           +A++++ +M+ V G+ P+ +++ SVL AC  + AL  GR I R+V  +    NL L NAL
Sbjct: 228 DAIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNAL 287

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +DMYAKCG++ EAR +FD MR +DV+SW++MI   G  G   +A   +SKML  G+ P+ 
Sbjct: 288 IDMYAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNE 347

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           + F+ +LSACSHAGL+++G   F  M ++Y++VP++ H+ C++DLL RAG+++EA DLI 
Sbjct: 348 VTFMGLLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLIN 407

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD 520
            MP+EPN  +WG+L+  C ++ +   G   A H+  L    +G YV ++   A  GR  D
Sbjct: 408 SMPIEPNVIVWGALLGGCRIHKDFRRGERVAQHLLELDSEYTGSYVYIAGAKASVGRVDD 467

Query: 521 VKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
                  M  KGI K PG S +E+++ V 
Sbjct: 468 AANCWLRMQHKGIIKDPGCSKIEVHNTVH 496


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 176/529 (33%), Positives = 294/529 (55%), Gaps = 37/529 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +HAQI++ +   ++  +   L+  Y   G + D+  VF+ +T  N V +N +I    +
Sbjct: 187 KMVHAQIVM-RGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTS 245

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N L+ +A  ++  M      P+ YT   V KA      + +G ++     ++G++ N+  
Sbjct: 246 NGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLV 305

Query: 168 GNGLVAMYGKCGCLKEARRVL--NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           G  L+ MY KCG L +AR V   N +       WN+M++GY+Q+G   EAL++  +M   
Sbjct: 306 GTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQN 365

Query: 226 RIKPDADTMASLLPSVTNT-----------------------SPENVLS----------- 251
            I  D  T  S+  ++  +                       S  N ++           
Sbjct: 366 GITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLED 425

Query: 252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
           V+++F +++ +++VSW  ++  Y+ +S+  EA+  +  M   G  PN  + +SVL +C  
Sbjct: 426 VRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCAS 485

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           L  L  GR++H  + +  L     +E+AL+DMYAKCGS+TEA  VFD++   D+VSWT++
Sbjct: 486 LCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAI 545

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           IS Y   G   DA+ LF +M +SG+  +++  + VL ACSH G++EEG +YF+ M + Y 
Sbjct: 546 ISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYG 605

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
           +VP +EH+AC++DLLGR G++++A + I++MPMEPNE +W +L+  C ++ N+++G +AA
Sbjct: 606 VVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAA 665

Query: 492 DHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
             I  + P  S  YVLLSN Y + G + D   +R  M  +G+KK PG S
Sbjct: 666 RKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYS 714



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 144/544 (26%), Positives = 242/544 (44%), Gaps = 85/544 (15%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y  C +      VFDE+  +NV  + V+I     + L++D    +  M   G  PD + Y
Sbjct: 111 YSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAY 170

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             ++++C G +SL +G  +H  +V  G   ++F    L+ MY K G ++++  V N M  
Sbjct: 171 SAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTE 230

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS------------V 241
            + V+WN+M++G   NG   EA D+   M++    P+  T+ S+  +            V
Sbjct: 231 HNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEV 290

Query: 242 TNTSPE-----NVL---SVKEMFLK---------LDNKNLVS------WNVMIAVYANNS 278
            N + E     NVL   ++ +M+ K         + + N ++      WN MI+ Y+ + 
Sbjct: 291 QNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSG 350

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN-LRLE 337
              EA++LY+QM  +GI  +  +  SV  A     +L  GR +H  V +  L    + + 
Sbjct: 351 CSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVN 410

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
           NA+ D Y+KCG L + R VFD+M  +D+VSWT++++AY  S  G +A+A F  M   G  
Sbjct: 411 NAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFA 470

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIM-------------------------TEQYKL 432
           P+   F SVL +C+    LE GR    ++                         TE  K+
Sbjct: 471 PNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKV 530

Query: 433 V-----PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
                 P I  +  ++    + G VE+A  L ++M +     I  + V   C+      G
Sbjct: 531 FDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSG---IKANAVTLLCVLFACSHG 587

Query: 488 ILAADHIFHLAPNQSGY--------YVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA 539
            +  + +F+    + GY        Y  + ++  + GR  D            I+KMP  
Sbjct: 588 GMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEF--------IRKMPME 639

Query: 540 SVEM 543
             EM
Sbjct: 640 PNEM 643



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 190/417 (45%), Gaps = 50/417 (11%)

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYN----LFNGNGLVAMYGKCGCLKEARRVLNDM 191
           VL+ C+   S+     +H  V+K   +      LFN    V  Y KC   + A  V ++M
Sbjct: 70  VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHV--YSKCSEFRAACGVFDEM 127

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS----------- 240
           P ++V +W  M+ G  ++G F +      EM +  I PD    ++++ S           
Sbjct: 128 PQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGK 187

Query: 241 ---------------VTNTSPENVL----SVKE---MFLKLDNKNLVSWNVMIAVYANNS 278
                            +TS  N+     S+++   +F  +   N VSWN MI+   +N 
Sbjct: 188 MVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNG 247

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
           +  EA DL+++M+     PN  ++ SV  A G L  + +G+++        ++ N+ +  
Sbjct: 248 LHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGT 307

Query: 339 ALVDMYAKCGSLTEARTVFDQ--MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
           AL+DMY+KCGSL +AR+VFD   + C     W +MIS Y  SG   +A+ L+ +M  +G+
Sbjct: 308 ALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGI 367

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
             D   + SV +A + +  L+ GR    ++ +    +  +     + D   + G +E+  
Sbjct: 368 TSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVR 427

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIG--ILAADHIFH---LAPNQSGYYVLL 508
            +  +M  E +   W +LV A   YS   +G   LA   +      APNQ  +  +L
Sbjct: 428 KVFDRME-ERDIVSWTTLVTA---YSQSSLGEEALATFCLMREEGFAPNQFTFSSVL 480


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 187/539 (34%), Positives = 289/539 (53%), Gaps = 36/539 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D   + ++HA II      +N +    ++ +Y   G +   RH+FD++  + V  +N +I
Sbjct: 19  DEAPVTQIHALIITTGLFFANSNFNGLVIASYARIGGITSARHLFDKLPQRGVDAWNAMI 78

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            +Y   Y   + L++Y  M   G  PD  T+   +KA S    L  G +I    V  G  
Sbjct: 79  VAYSRRYHLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAGERIWRRAVDFGYG 138

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++F G+ ++ +Y KCG + EA+ V + M  +DVV W +M+ G  QNG   EA+D+ R M
Sbjct: 139 CDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRM 198

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENV-LSV------KEM-------------------- 255
               I+ D   M  L+ +  N     + LSV      +EM                    
Sbjct: 199 RKEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGD 258

Query: 256 -------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
                  F ++  KN VSW  +I+ +A N     A+DL ++M+    +P+   + S L A
Sbjct: 259 LELASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLA 318

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  +  L LG+ IH Y+ R +L   L L  AL+DMYAKCGSL+ A  +FD++  +DV+ W
Sbjct: 319 CSQVGHLKLGKSIHGYIVR-RLGFELVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILW 377

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            +MI++YG+ G G + ++LF KM  + + PD   F S+LSA SH+G ++ G+Y+F  M  
Sbjct: 378 NTMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVDVGQYWFNAMVN 437

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
           + K+ P  +H+AC+VDL  RAG+VEEAY LI+ M  EP   IW +L++ C  Y N+  G 
Sbjct: 438 ECKIPPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLSGCHNYRNLLFGE 497

Query: 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQ 546
           +AA  I  L P+  G Y L+SN ++ A  W  V  +RK M   G+KK+PG ++VE+N +
Sbjct: 498 VAAKKILDLNPDDLGIYALVSNFFSLARMWDRVSILRKIMKETGMKKVPGYSAVEVNGK 556


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 172/513 (33%), Positives = 286/513 (55%), Gaps = 34/513 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  C  +      F     +NVV +NV++ +Y       ++  ++  M + G +P+
Sbjct: 413 LLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPN 472

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +TYP +L+ CS   ++ +G QIH  V+K G  +N++  + L+ MY K G L  A ++  
Sbjct: 473 QFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFR 532

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT------- 242
            +  KDVV+W +M+AGYAQ+ +F EAL++ +EM+   I  D    AS + +         
Sbjct: 533 RLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQ 592

Query: 243 ---------------NTSPENVL--------SVKEMFLKLD---NKNLVSWNVMIAVYAN 276
                          + S  N L         V++ +   D   +K+ +SWN +I+ +A 
Sbjct: 593 GQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQ 652

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           +    EA+ L+ QM   G E N+ +    + A  +++ + LG++IH  + +        +
Sbjct: 653 SGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEV 712

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            N L+ +YAKCG++ +A   F +M  ++ +SW +M++ Y   G G+ A++LF  M   G+
Sbjct: 713 SNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGV 772

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P+ + FV VLSACSH GL++EG  YF+ M E + LVP+ EH+AC+VDLLGR+G +  A 
Sbjct: 773 LPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRAR 832

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
             +++MP++P+  +  +L++AC ++ N+DIG  AA H+  L P  S  YVLLSN+YA  G
Sbjct: 833 RFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTG 892

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           +WG   R R+ M  +G+KK PG S +E+N+ V 
Sbjct: 893 KWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVH 925



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/469 (28%), Positives = 229/469 (48%), Gaps = 46/469 (9%)

Query: 47  LKKLHAQIIINQHLHS----NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++K+HA+ I + + +S    NP I L     Y   G +   + VFD +  ++ V +  ++
Sbjct: 189 VEKIHARTITHGYENSLFVCNPLIDL-----YFKNGFLNSAKKVFDGLQKRDSVSWVAML 243

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
                +    +A+ ++  M   G  P  Y +  VL AC+      VG Q+H  V+K G  
Sbjct: 244 SGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFS 303

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
              +  N LV +Y + G    A +V N M  +D V++NS+++G +Q G  D+AL++ ++M
Sbjct: 304 LETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKM 363

Query: 223 ESLRIKPDADTMASLLPSVTNTSP---------------------------------ENV 249
               +KPD  T+ASLL + ++                                     ++
Sbjct: 364 CLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDI 423

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            +  E FL  + +N+V WNVM+  Y       E+  ++ QM++ GIEPN  +  S+L  C
Sbjct: 424 KTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTC 483

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L A+ LG +IH  V +   Q N+ + + L+DMYAK G L  A  +F +++ +DVVSWT
Sbjct: 484 SSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWT 543

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY-YFKIMTE 428
           +MI+ Y    +  +A+ LF +M   G+  D+I F S +SAC+    L +G+  + +    
Sbjct: 544 AMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVS 603

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            Y     + +   LV L  R GKV +AY    ++  + N   W SL++ 
Sbjct: 604 GYSDDLSVGN--ALVSLYARCGKVRDAYFAFDKIFSKDNIS-WNSLISG 649



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 139/510 (27%), Positives = 234/510 (45%), Gaps = 47/510 (9%)

Query: 2   KAVVLLCR-HFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHL 60
           +AV+L C+ H S   P   +  S    +LS  AC     K    K  ++LH  +++ Q  
Sbjct: 254 EAVLLFCQMHTSGVYPTPYIFSS----VLS--ACT----KVEFYKVGEQLHG-LVLKQGF 302

Query: 61  HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKN 120
                +   L+  Y   G  +    VF+ +  ++ V +N LI           AL ++K 
Sbjct: 303 SLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKK 362

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M +    PDC T   +L ACS   +LLVG Q H   +K G+  ++     L+ +Y KC  
Sbjct: 363 MCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSD 422

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           +K A        +++VV WN M+  Y      +E+  +  +M+   I+P+  T  S+L +
Sbjct: 423 IKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRT 482

Query: 241 VT----------------------NTSPENVL-----------SVKEMFLKLDNKNLVSW 267
            +                      N    +VL              ++F +L  K++VSW
Sbjct: 483 CSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSW 542

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
             MIA YA +   AEA++L+ +M+  GI  + I  AS + AC  + AL  G++IH     
Sbjct: 543 TAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACV 602

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
                +L + NALV +YA+CG + +A   FD++  +D +SW S+IS +  SG   +A++L
Sbjct: 603 SGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSL 662

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           FS+M  +G   +S  F   +SA ++   ++ G+     M  +       E    L+ L  
Sbjct: 663 FSQMSKAGQEINSFTFGPAVSAAANVANVKLGK-QIHAMIIKTGHDSETEVSNVLITLYA 721

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           + G +++A     +MP E NE  W +++  
Sbjct: 722 KCGNIDDAERQFFEMP-EKNEISWNAMLTG 750



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/445 (24%), Positives = 218/445 (48%), Gaps = 40/445 (8%)

Query: 69  KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
           +LM  Y A G +     VFDE+  + +  +N ++  +V   +    L +++ M      P
Sbjct: 108 RLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKP 167

Query: 129 DCYTYPCVLKACSGSNSLLVGLQ-IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           D  TY  VL+ C G +     ++ IH   +  G + +LF  N L+ +Y K G L  A++V
Sbjct: 168 DERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKV 227

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN---- 243
            + +  +D V+W +M++G +Q+G  +EA+ +  +M +  + P     +S+L + T     
Sbjct: 228 FDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFY 287

Query: 244 -----------------------------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
                                        +   N +  +++F  +  ++ VS+N +I+  
Sbjct: 288 KVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGL 347

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           +      +A++L+ +M +  ++P+ ++VAS+L AC  + ALL+G++ H Y  +  +  ++
Sbjct: 348 SQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDI 407

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            LE AL+D+Y KC  +  A   F     ++VV W  M+ AYG+     ++  +F++M M 
Sbjct: 408 ILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQME 467

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKV 452
           G+ P+   + S+L  CS    ++ G    +I T+  K   +   +  + L+D+  + GK+
Sbjct: 468 GIEPNQFTYPSILRTCSSLRAVDLGE---QIHTQVLKTGFQFNVYVSSVLIDMYAKLGKL 524

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAA 477
           + A  + +++  E +   W +++A 
Sbjct: 525 DHALKIFRRLK-EKDVVSWTAMIAG 548



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 166/362 (45%), Gaps = 36/362 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++H Q++       N  +   L+  Y   G++     +F  +  K+VV +  +I  Y  
Sbjct: 493 EQIHTQVL-KTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQ 551

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +  + +AL+++K M   G   D   +   + AC+G  +L  G QIH      G   +L  
Sbjct: 552 HEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSV 611

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC-------R 220
           GN LV++Y +CG +++A    + + SKD ++WNS+++G+AQ+G  +EAL +        +
Sbjct: 612 GNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQ 671

Query: 221 EMESLRIKP--------------------------DADTMASLLPSVTNTSPENVLSVKE 254
           E+ S    P                          D++T  S +         N+   + 
Sbjct: 672 EINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAER 731

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
            F ++  KN +SWN M+  Y+ +    +A+ L+  M+  G+ PN ++   VL AC  +  
Sbjct: 732 QFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGL 791

Query: 315 LLLGRKIHRYV-ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMI 372
           +  G K  + + E   L P       +VD+  + G L+ AR   ++M  Q D +   +++
Sbjct: 792 VDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLL 851

Query: 373 SA 374
           SA
Sbjct: 852 SA 853



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 189/443 (42%), Gaps = 42/443 (9%)

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           +Y N+    + ++    M   G   +  TY  +L  C  S     G ++H  ++K+G   
Sbjct: 42  AYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCA 101

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
            +     L+ +Y   G L  A  V ++MP + +  WN ++  +         L + R M 
Sbjct: 102 EVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRML 161

Query: 224 SLRIKPDADTMASLL-----------------PSVTNTSPENVL---------------- 250
             ++KPD  T A +L                         EN L                
Sbjct: 162 QEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFL 221

Query: 251 -SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            S K++F  L  ++ VSW  M++  + +    EAV L+ QM   G+ P     +SVL AC
Sbjct: 222 NSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSAC 281

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             +    +G ++H  V ++       + NALV +Y++ G+   A  VF+ M  +D VS+ 
Sbjct: 282 TKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYN 341

Query: 370 SMISAYGMSGQGYD--AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           S+IS  G+S QGY   A+ LF KM +  L PD +   S+LSACS  G L  G+ +     
Sbjct: 342 SLIS--GLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAI 399

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD-- 485
           +   +   I     L+DL  +   ++ A++       E N  +W  ++ A  L  N++  
Sbjct: 400 KA-GMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETE-NVVLWNVMLVAYGLLDNLNES 457

Query: 486 IGILAADHIFHLAPNQSGYYVLL 508
             I     +  + PNQ  Y  +L
Sbjct: 458 FKIFTQMQMEGIEPNQFTYPSIL 480


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 182/506 (35%), Positives = 292/506 (57%), Gaps = 12/506 (2%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD-TRHVFDEITNKNVVFFNVLIRSY 105
           LKK+HAQ+II   +  +  I  K + +Y    + +D    VF  I   +   +  +IR +
Sbjct: 43  LKKIHAQLIITGQI-KDTFIATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGF 101

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
           V       AL  Y  M   G + + +T+  VLKA     S   G  +H  +VKVG  Y++
Sbjct: 102 VEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDV 161

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           F  N L+ MY KCG + +A  + ++MP+ +VVTWN+M+ G    G  + A  +  EM   
Sbjct: 162 FTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEM--- 218

Query: 226 RIKPDADTMASLLPSVTNTSPENVLSV-KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAV 284
              P+ + + S    V   S    + + + +F  +  +++VSW  MI+ Y  N   AEA+
Sbjct: 219 ---PERN-VGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEAL 274

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMY 344
           +L+ +M + G+  ++I + S+L AC  + AL +GR IH Y++R KL+ ++ L+ ALVDMY
Sbjct: 275 ELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMY 334

Query: 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404
           AKCG +  A  VF+ M  +++ SW +M+S   + G G+ A+ LF +M  +G+ P+ I FV
Sbjct: 335 AKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFV 394

Query: 405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM 464
           +VLSACSH G +EEG   F  M +++ + P++EH+ C+VD+L R G + EA ++I+ MP+
Sbjct: 395 AVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPL 454

Query: 465 EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV 524
           EPN  IWG+L+ AC ++   ++G     +I  L     G YVLLSNI+A   +W +V++ 
Sbjct: 455 EPNVVIWGALLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKT 514

Query: 525 RKFMNSKGI-KKMPG-ASVEMNDQVQ 548
           RK M   G+ KK+PG +S+E++  V 
Sbjct: 515 RKMMKQMGVEKKIPGYSSIELDSVVH 540


>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 512

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 165/474 (34%), Positives = 275/474 (58%), Gaps = 40/474 (8%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +FD+I   +V  +N  I+++ +    +    +Y  M   G  P+ Y++  +  AC+   +
Sbjct: 38  LFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFN 97

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           +  G  +H    K G   ++F    L+ MY K G L+ AR++ ++MP +D+ TWNS++AG
Sbjct: 98  VYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAG 157

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           YA++G  + AL                                     E+F K+  +N++
Sbjct: 158 YARSGHMEAAL-------------------------------------ELFNKMPVRNVI 180

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           SW  +I+ YA N   A+A+++++ +E   G +PN +S+ASVLPAC  L AL +G++I  Y
Sbjct: 181 SWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAY 240

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYD 383
                   N  + NA+++++A+CG++ EA+ VFD++  + ++ SW +MI    + G+  D
Sbjct: 241 ARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCID 300

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV 443
           A+ L+ +ML+  + PD + FV +L AC+H G++ EGR  F+ M  ++++ P++EH+ CLV
Sbjct: 301 ALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLV 360

Query: 444 DLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503
           DLLGRAG+++EAY+LI+ MPM P+  IWG+L+ AC  + N+++G +AA+ +F L P   G
Sbjct: 361 DLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPG 420

Query: 504 YYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
            YV+LSNIYA AG W  V R+RK M    I K  G S +E+ D +    +  RS
Sbjct: 421 NYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFIVEDRS 474



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 139/294 (47%), Gaps = 14/294 (4%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           A   +LD Y  +  L+    Q+     +   P+    L+  Y   G M     +F+++  
Sbjct: 119 AMTALLDMYAKLGMLRSAR-QLFDEMPVRDIPTWN-SLIAGYARSGHMEAALELFNKMPV 176

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
           +NV+ +  LI  Y  N  Y  AL ++  + +  G  P+  +   VL ACS   +L +G +
Sbjct: 177 RNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKR 236

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNG 210
           I       G   N +  N ++ ++ +CG ++EA++V +++ SK ++ +WN+M+ G A +G
Sbjct: 237 IEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHG 296

Query: 211 RFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLV 265
           R  +AL +  +M   +++PD  T   LL + T+     V   +++F  +++K      L 
Sbjct: 297 RCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGG--MVAEGRQLFESMESKFQVAPKLE 354

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
            +  ++ +        EA +L   M    + P+++   ++L AC     + LG 
Sbjct: 355 HYGCLVDLLGRAGELQEAYNLIQNMP---MAPDSVIWGTLLGACSFHGNVELGE 405



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 18/221 (8%)

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           ++IH Y  R  L         L++   +   L  A T+FDQ+    V  +   I  +   
Sbjct: 5   KQIHAYSLRNGLDHT----KFLIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSI 60

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           G  +    L+ +M   G  P+  +F  +  AC+    +  G+       +       +  
Sbjct: 61  GHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKS-GFASDMFA 119

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
              L+D+  + G +  A  L  +MP+  +   W SL+A      +M+    AA  +F+  
Sbjct: 120 MTALLDMYAKLGMLRSARQLFDEMPVR-DIPTWNSLIAGYARSGHME----AALELFNKM 174

Query: 499 P--NQSGYYVLLSNIYAKAGRWGDVKRVRKFM---NSKGIK 534
           P  N   +  L+S  YA+ G++   K +  F+   N KG K
Sbjct: 175 PVRNVISWTALISG-YAQNGKY--AKALEMFIGLENEKGTK 212


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 173/513 (33%), Positives = 282/513 (54%), Gaps = 40/513 (7%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +L +   I  +  +HAQ+I N H   +P +  +L+R+   C  +     +F    N NV 
Sbjct: 55  LLQRSRHINQVLPIHAQLIRNGH-SQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVY 113

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +  LI  +V++  Y +A+ +Y  M      PD Y    +LKAC    +L  G ++H   
Sbjct: 114 LYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRA 173

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           +K+G   N      ++ +YGKCG L +ARRV  +MP +DVV    M++ Y+  G  +EA 
Sbjct: 174 LKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMP-EDVVASTVMISSYSDQGLVEEAG 232

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
            V                                     F ++  K+ V W  MI  +  
Sbjct: 233 AV-------------------------------------FSRVRRKDTVCWTAMIDGFVR 255

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N     A++ +  M+   + PN  ++  VL AC  L AL +GR +H Y+ + +++ NL +
Sbjct: 256 NEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFV 315

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            NAL++MY++CGS+ EA+TVFD+M+ +DV+++ +MIS   M+G+   A+ LF  M+   L
Sbjct: 316 GNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRL 375

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P ++ FV VL+ACSH GL++ G   F  M   Y++ P+IEH+ C+VDLLGR G++EEAY
Sbjct: 376 RPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAY 435

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           DLI+ M M P+  + G+L++AC ++ N+++G   A  +       SG YVLLS++YA +G
Sbjct: 436 DLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSG 495

Query: 517 RWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           +W +  +VR  M   G++K PG +S+E+N+++ 
Sbjct: 496 KWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIH 528


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 173/462 (37%), Positives = 264/462 (57%), Gaps = 36/462 (7%)

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G  P+ +T+P  +K+C+  +  + G Q+HC V K G     F    L++MYGKC  +  A
Sbjct: 5   GASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNA 64

Query: 185 RRVLNDMPS--KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV- 241
           R++ ++ P   K  V +NS+++GYA N R  + + +  EM  L ++ +  TM  L+    
Sbjct: 65  RKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCG 124

Query: 242 ---------------------TNTSPENVLSV-----------KEMFLKLDNKNLVSWNV 269
                                 ++S  N L             +++F ++  K L++WN 
Sbjct: 125 IPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNA 184

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           MI  YA N +    ++LY +ME  G  P+ +++  VL +C  L AL +G+++ R +E   
Sbjct: 185 MINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFG 244

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
              N  L NALV+MYA+CG+L +AR +FD M  + VVSWT++I  YGM GQG  AV LF 
Sbjct: 245 FSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFD 304

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           +M+  G+ PD  AFVSVLSACSHAGL  +G  YF +M  +Y L P  EH++C+VDLLGRA
Sbjct: 305 EMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRA 364

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G++ EA +LI+ M +  +  +WG+L+ AC ++ N+++  LA + +  L P  +GYYVLLS
Sbjct: 365 GRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLS 424

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           N+Y +AG    + RVR  M  + +KK PG S VE   +V + 
Sbjct: 425 NVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLF 466



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 171/366 (46%), Gaps = 38/366 (10%)

Query: 46  TLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDE--ITNKNVVFFNVLIR 103
           T K+LH  +     L   P +   L+  YG C  + + R +FDE   + K  V +N L+ 
Sbjct: 28  TGKQLHCHVFKTGCL-LEPFVQTSLISMYGKCSLIDNARKLFDENPQSRKLTVCYNSLLS 86

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            Y  N    D + ++  M   G + +  T   +++ C    +L +G+ +H   VK GLD 
Sbjct: 87  GYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDM 146

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           +   GN L+ MY K G +   R++ ++MP K ++TWN+M+ GYAQNG  +  L++ +EME
Sbjct: 147 DSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEME 206

Query: 224 SLRIKPDADTMASLLPSVTN--------------------TSP-------------ENVL 250
           S    PD  T+  +L S  +                    ++P              N+ 
Sbjct: 207 SKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLK 266

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
             +++F  +  K++VSW  +I  Y  +     AV L+ +M   GI+P+  +  SVL AC 
Sbjct: 267 KARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACS 326

Query: 311 DLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSW 368
                  G      +ERK  L+P     + +VD+  + G L EAR + + M+ + D   W
Sbjct: 327 HAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALW 386

Query: 369 TSMISA 374
            +++ A
Sbjct: 387 GALLGA 392



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 129/276 (46%), Gaps = 20/276 (7%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
           L  + S+G  L+  Y   G++   R +FDE+  K ++ +N +I  Y  N L  + L +YK
Sbjct: 144 LDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYK 203

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M   GF PD  T   VL +C+   +L VG ++   +   G   N F  N LV MY +CG
Sbjct: 204 EMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCG 263

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
            LK+AR + + MP K VV+W +++ GY  +G+ + A+ +  EM    IKPD     S+L 
Sbjct: 264 NLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLS 323

Query: 240 SVTNTSPEN----VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
           + ++    N       V E    L       ++ M+ +        EA +L   M+V   
Sbjct: 324 ACSHAGLTNKGLDYFGVMERKYGL-RPGAEHYSCMVDLLGRAGRLNEARELIESMQVR-- 380

Query: 296 EPNAISVASVLPACGDLSALLLGR-KIHRYVERKKL 330
                       A G L   LLG  KIHR VE  +L
Sbjct: 381 ------------ADGALWGALLGACKIHRNVELAEL 404


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  327 bits (838), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 190/545 (34%), Positives = 305/545 (55%), Gaps = 51/545 (9%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDE-ITNKNVVF--- 97
           P ++ +++LHAQ++  Q LH +P    KL+ +Y    ++   R VF   +   N  F   
Sbjct: 37  PRLRHVQELHAQLL-KQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSPFPSS 95

Query: 98  ----FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
                  L+R+Y  N L + AL V+ ++ +       +TY  ++KA + +    V    H
Sbjct: 96  TTLLTKTLLRAYALNSLPHAALAVFLDVPLR--QRGTFTYSFLIKALAAAGLTPV-RGAH 152

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
             VVK+G   + F GN L+  Y K   L +A++V ++M ++DVV+WN+ +A   + G  D
Sbjct: 153 AHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVD 212

Query: 214 EALDVCREMESLRIKPDADTMA---------------------SLLPSVTNTSPENVLSV 252
            A  +  EM      P+ DT++                       +P     S   V+S 
Sbjct: 213 AARSMFDEM------PEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSA 266

Query: 253 ----------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
                     + +F K+  KNLV+W +M++  A   +  EA  L+ +M    IE + I+V
Sbjct: 267 YCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAV 326

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD-QMR 361
            S+L AC +  +L LG++IHR+V ++KL  +  + NAL+DM+ KCG +  A  +FD ++ 
Sbjct: 327 VSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIV 386

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            +D+VSW  +I  + M G G  A+ LF++M   G  PD++  ++VLSAC+H GL+EEGR 
Sbjct: 387 EKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRR 446

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
           +F  M   Y + P+IEH+ C+VDLLGR G ++EA D+IK+MP EPNE IWGSL++AC L+
Sbjct: 447 FFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLH 506

Query: 482 SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS- 540
            N++   LA + + +L P+ +G Y +LSNIYA+AG+W D+ + R  M   G +K  G+S 
Sbjct: 507 KNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSW 566

Query: 541 VEMND 545
           +E+N+
Sbjct: 567 IELNE 571


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 187/549 (34%), Positives = 304/549 (55%), Gaps = 50/549 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++HA  +    L  N  I   L+  YG  G++  ++ +      +++V +N ++ S   
Sbjct: 222 KQVHAYGLRKGEL--NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 279

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLF 166
           N    +AL   + M + G +PD +T   VL ACS    L  G ++H   +K G LD N F
Sbjct: 280 NEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 339

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME-SL 225
            G+ LV MY  C  +   RRV + M  + +  WN+M+AGY+QN    EAL +   ME S 
Sbjct: 340 VGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESA 399

Query: 226 RIKPDADTMASLLPSVTNTSP----------------------ENVLS-----------V 252
            +  ++ TMA ++P+   +                        +N L             
Sbjct: 400 GLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIA 459

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME-----------VHGIEPNAIS 301
             +F K+++++LV+WN MI  Y  +    +A+ L  +M+              ++PN+I+
Sbjct: 460 MRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSIT 519

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           + ++LP+C  LSAL  G++IH Y  +  L  ++ + +ALVDMYAKCG L  +R VFDQ+ 
Sbjct: 520 LMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 579

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            ++V++W  +I AYGM G G +A+ L   M++ G+ P+ + F+SV +ACSH+G+++EG  
Sbjct: 580 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 639

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNER-IWGSLVAACCL 480
            F +M   Y + P  +H+AC+VDLLGRAG+++EAY L+  MP + N+   W SL+ A  +
Sbjct: 640 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 699

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           ++N++IG +AA ++  L PN + +YVLL+NIY+ AG W     VR+ M  +G++K PG S
Sbjct: 700 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 759

Query: 541 -VEMNDQVQ 548
            +E  D+V 
Sbjct: 760 WIEHGDEVH 768



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 153/575 (26%), Positives = 267/575 (46%), Gaps = 96/575 (16%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++  K++HA +    +   + ++   L+  Y  CG       VFD I+ +N V +N LI
Sbjct: 112 DMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLI 171

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG---SNSLLVGLQIHCSVVKV 159
            S  +   +  AL  ++ M     +P  +T   V+ ACS       L++G Q+H   ++ 
Sbjct: 172 SSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRK 231

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G + N F  N LVAMYGK G L  ++ +L     +D+VTWN++++   QN +  EAL+  
Sbjct: 232 G-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYL 290

Query: 220 REMESLRIKPDADTMASLLPSVTN-----TSPE--------------------------- 247
           REM    ++PD  T++S+LP+ ++     T  E                           
Sbjct: 291 REMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCN 350

Query: 248 --NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVAS 304
              VLS + +F  + ++ +  WN MIA Y+ N    EA+ L++ ME   G+  N+ ++A 
Sbjct: 351 CKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAG 410

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           V+PAC    A      IH +V ++ L  +  ++N L+DMY++ G +  A  +F +M  +D
Sbjct: 411 VVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRD 470

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKML-----------MSGLCPDSIAFVSVLSACSHA 413
           +V+W +MI+ Y  S    DA+ L  KM               L P+SI  +++L +C+  
Sbjct: 471 LVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAAL 530

Query: 414 GLLEEGR----YYFK------------------------IMTEQYKLVPR--IEHFACLV 443
             L +G+    Y  K                        +  + +  +P+  +  +  ++
Sbjct: 531 SALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVII 590

Query: 444 DLLGRAGKVEEAYDLIKQMPME---PNERIWGSLVAACCLYSNMDIGILAADHIFH-LAP 499
              G  G  +EA DL++ M ++   PNE  + S+ AAC     +D G+     IF+ + P
Sbjct: 591 MAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL----RIFYVMKP 646

Query: 500 N-----QSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529
           +      S +Y  + ++  +AGR   +K   + MN
Sbjct: 647 DYGVEPSSDHYACVVDLLGRAGR---IKEAYQLMN 678



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 189/400 (47%), Gaps = 39/400 (9%)

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           L+RS V + L  +A+  Y +M V G  PD Y +P +LKA +    + +G QIH  V K G
Sbjct: 68  LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG 127

Query: 161 LDYNLFN-GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
              +     N LV +Y KCG      +V + +  ++ V+WNS+++      +++ AL+  
Sbjct: 128 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAF 187

Query: 220 REMESLRIKPDADTMASLLPSVTNTS-PENVLSVKE---------------------MFL 257
           R M    ++P + T+ S++ + +N   PE ++  K+                     M+ 
Sbjct: 188 RCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYG 247

Query: 258 KL-------------DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
           KL               ++LV+WN +++    N    EA++   +M + G+EP+  +++S
Sbjct: 248 KLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISS 307

Query: 305 VLPACGDLSALLLGRKIHRY-VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           VLPAC  L  L  G+++H Y ++   L  N  + +ALVDMY  C  +   R VFD M  +
Sbjct: 308 VLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR 367

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMS-GLCPDSIAFVSVLSACSHAGLLEEGRYY 422
            +  W +MI+ Y  +    +A+ LF  M  S GL  +S     V+ AC  +G        
Sbjct: 368 KIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAI 427

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
              + ++     R      L+D+  R GK++ A  +  +M
Sbjct: 428 HGFVVKRGLDRDRFVQ-NTLMDMYSRLGKIDIAMRIFGKM 466



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 178/380 (46%), Gaps = 50/380 (13%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++T K+LHA  + N  L  N  +G  L+  Y  C Q++  R VFD + ++ +  +N +I 
Sbjct: 318 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 377

Query: 104 SYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            Y  N    +AL ++  M    G   +  T   V+ AC  S +      IH  VVK GLD
Sbjct: 378 GYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLD 437

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            + F  N L+ MY + G +  A R+   M  +D+VTWN+M+ GY  +   ++AL +  +M
Sbjct: 438 RDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKM 497

Query: 223 ESLR-----------IKPDADTMASLLPSVTNTSP------------ENVLSV------- 252
           ++L            +KP++ T+ ++LPS    S             +N L+        
Sbjct: 498 QNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSA 557

Query: 253 --------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                         +++F ++  KN+++WNV+I  Y  +    EA+DL   M V G++PN
Sbjct: 558 LVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPN 617

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKK--LQPNLRLENALVDMYAKCGSLTEARTV 356
            ++  SV  AC     +  G +I  YV +    ++P+      +VD+  + G + EA  +
Sbjct: 618 EVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQL 676

Query: 357 FDQM--RCQDVVSWTSMISA 374
            + M        +W+S++ A
Sbjct: 677 MNMMPRDFNKAGAWSSLLGA 696



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 36/248 (14%)

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           W  ++     +++  EAV  Y+ M V GI+P+  +  ++L A  DL  + LG++IH +V 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 327 RKKLQ-PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
           +      ++ + N LV++Y KCG       VFD++  ++ VSW S+IS+     +   A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACS--------------HAGLLEEGRYYFKIMTEQYK 431
             F  ML   + P S   VSV++ACS              HA  L +G     I+     
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA 244

Query: 432 LVPRIEHFACLVDLLGRAG------------------KVEEAYDLIKQMPM---EPNERI 470
           +  ++   A    LLG  G                  ++ EA + +++M +   EP+E  
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 304

Query: 471 WGSLVAAC 478
             S++ AC
Sbjct: 305 ISSVLPAC 312


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 171/515 (33%), Positives = 292/515 (56%), Gaps = 5/515 (0%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N +L  Y     L+   AQ + ++ L  +      L+  Y   G + + +  FD +  ++
Sbjct: 62  NQLLHLYAKFGKLRD--AQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRD 119

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
            V +N  I  +  N    ++L ++K M   GF+P  YT   +L A +    L  G QIH 
Sbjct: 120 SVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHG 179

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
           S++      N+F  N L  MY KCG +++AR + + +  K++V+WN M++GYA+NG+ ++
Sbjct: 180 SIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEK 239

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
            + +  +M      PD  TM++++ +        V   + +F +   K++V W  M+  Y
Sbjct: 240 CIGLLHQMRLSGHMPDQVTMSTIIAAYCQCG--RVDEARRVFSEFKEKDIVCWTAMMVGY 297

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           A N    +A+ L+ +M +  IEP++ +++SV+ +C  L++L  G+ +H       L  NL
Sbjct: 298 AKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNL 357

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + +AL+DMY+KCG + +AR+VF+ M  ++VVSW +MI     +G   DA+ LF  ML  
Sbjct: 358 LVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQ 417

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
              PD++ F+ +LSAC H   +E+G+ YF  ++ Q+ + P ++H+AC+V+LLGR G++E+
Sbjct: 418 KFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQ 477

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A  LIK M  +P+  IW +L++ C    ++    +AA H+F L P  +  Y++LSN+YA 
Sbjct: 478 AVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYAS 537

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            GRW DV  VR  M SK +KK  G S +E++++V 
Sbjct: 538 MGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVH 572



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 179/372 (48%), Gaps = 46/372 (12%)

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           F  N L+ +Y K G L++A+ + + M  +D  +WN++++ YA++G               
Sbjct: 59  FLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSG--------------- 103

Query: 226 RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285
                                 ++ ++K  F ++  ++ VS+N  IA ++ NS P E+++
Sbjct: 104 ----------------------SIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLE 141

Query: 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
           L+ +M+  G EP   ++ S+L A   L  L  G++IH  +  +    N+ + NAL DMYA
Sbjct: 142 LFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYA 201

Query: 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
           KCG + +AR +FD +  +++VSW  MIS Y  +GQ    + L  +M +SG  PD +   +
Sbjct: 202 KCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMST 261

Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--- 462
           +++A    G ++E R  F    E+      I  +  ++    + G+ E+A  L  +M   
Sbjct: 262 IIAAYCQCGRVDEARRVFSEFKEK-----DIVCWTAMMVGYAKNGREEDALLLFNEMLLE 316

Query: 463 PMEPNERIWGSLVAACCLYSNMDIG-ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
            +EP+     S+V++C   +++  G  +    I     N       L ++Y+K G   D 
Sbjct: 317 HIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDA 376

Query: 522 KRVRKFMNSKGI 533
           + V   M ++ +
Sbjct: 377 RSVFNLMPTRNV 388



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 19/205 (9%)

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP-NLRL 336
           SM  ++VDL         E    +   ++  C   + +   +++  ++E    QP +  L
Sbjct: 5   SMLRQSVDLLCSRSTATSE----AYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFL 60

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            N L+ +YAK G L +A+ +FD+M  +D  SW +++SAY  SG   +  A F +M     
Sbjct: 61  HNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFR-- 118

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE------QYKLVPRIEHFACLVDLLGRAG 450
             DS+++ + ++  S     +E    FK M        +Y +V  +   A L+DL  R G
Sbjct: 119 --DSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDL--RYG 174

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLV 475
           K      +++      N  IW +L 
Sbjct: 175 KQIHGSIIVRNFL--GNVFIWNALT 197


>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 177/505 (35%), Positives = 282/505 (55%), Gaps = 10/505 (1%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLM--RTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           I TLK++HA +I+ +  +SN S   +L+   +    G M     +F  IT  +   +N +
Sbjct: 26  IGTLKQIHASMIV-KGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTM 84

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           IR    +    +A+ +Y  M      PD +T+P VLKAC+    + +G  +H  V ++G 
Sbjct: 85  IRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGF 144

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           + N F  N L+  +  CG L  AR + +    +DVV W+++ AGYA+ G    A  +  E
Sbjct: 145 ESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDE 204

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
           M      P  D ++  +          + S +++F ++  +++V+WN MIA Y       
Sbjct: 205 M------PVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQ 258

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP-NLRLENAL 340
           +A++++ +M   G  P+ +++ S+L AC DL  L  G++IH  +     +  ++ L NAL
Sbjct: 259 QALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNAL 318

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +DMYAKCGS+  A  VF  MR +DV +W S++      G    ++ LF++M    + PD 
Sbjct: 319 IDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDE 378

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           I FV VL ACSHAG +EEGR YF +M ++Y + P I H+ C+VDLLGRAG + EA+D I 
Sbjct: 379 ITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFID 438

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD 520
            M +EPN  +W +L+ AC ++ N+++G  A   +  +  ++SG YVLLSNIYA  G W  
Sbjct: 439 TMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDG 498

Query: 521 VKRVRKFMNSKGIKKMPGASVEMND 545
           V++VRK M+  G++K  G S+   D
Sbjct: 499 VEKVRKLMDDSGVRKEAGCSLIEGD 523


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 187/549 (34%), Positives = 304/549 (55%), Gaps = 50/549 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++HA  +    L  N  I   L+  YG  G++  ++ +      +++V +N ++ S   
Sbjct: 222 KQVHAYGLRKGEL--NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 279

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLF 166
           N    +AL   + M + G +PD +T   VL ACS    L  G ++H   +K G LD N F
Sbjct: 280 NEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 339

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME-SL 225
            G+ LV MY  C  +   RRV + M  + +  WN+M+AGY+QN    EAL +   ME S 
Sbjct: 340 VGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESA 399

Query: 226 RIKPDADTMASLLPSVTNTSP----------------------ENVLS-----------V 252
            +  ++ TMA ++P+   +                        +N L             
Sbjct: 400 GLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIA 459

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME-----------VHGIEPNAIS 301
             +F K+++++LV+WN MI  Y  +    +A+ L  +M+              ++PN+I+
Sbjct: 460 MRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSIT 519

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           + ++LP+C  LSAL  G++IH Y  +  L  ++ + +ALVDMYAKCG L  +R VFDQ+ 
Sbjct: 520 LMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 579

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            ++V++W  +I AYGM G G +A+ L   M++ G+ P+ + F+SV +ACSH+G+++EG  
Sbjct: 580 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 639

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNER-IWGSLVAACCL 480
            F +M   Y + P  +H+AC+VDLLGRAG+++EAY L+  MP + N+   W SL+ A  +
Sbjct: 640 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 699

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           ++N++IG +AA ++  L PN + +YVLL+NIY+ AG W     VR+ M  +G++K PG S
Sbjct: 700 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 759

Query: 541 -VEMNDQVQ 548
            +E  D+V 
Sbjct: 760 WIEHGDEVH 768



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 153/575 (26%), Positives = 267/575 (46%), Gaps = 96/575 (16%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++  K++HA +    +   + ++   L+  Y  CG       VFD I+ +N V +N LI
Sbjct: 112 DMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLI 171

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG---SNSLLVGLQIHCSVVKV 159
            S  +   +  AL  ++ M     +P  +T   V+ ACS       L++G Q+H   ++ 
Sbjct: 172 SSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRK 231

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G + N F  N LVAMYGK G L  ++ +L     +D+VTWN++++   QN +  EAL+  
Sbjct: 232 G-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYL 290

Query: 220 REMESLRIKPDADTMASLLPSVTN-----TSPE--------------------------- 247
           REM    ++PD  T++S+LP+ ++     T  E                           
Sbjct: 291 REMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCN 350

Query: 248 --NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVAS 304
              VLS + +F  + ++ +  WN MIA Y+ N    EA+ L++ ME   G+  N+ ++A 
Sbjct: 351 CKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAG 410

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           V+PAC    A      IH +V ++ L  +  ++N L+DMY++ G +  A  +F +M  +D
Sbjct: 411 VVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRD 470

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKML-----------MSGLCPDSIAFVSVLSACSHA 413
           +V+W +MI+ Y  S    DA+ L  KM               L P+SI  +++L +C+  
Sbjct: 471 LVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAAL 530

Query: 414 GLLEEGR----YYFK------------------------IMTEQYKLVPR--IEHFACLV 443
             L +G+    Y  K                        +  + +  +P+  +  +  ++
Sbjct: 531 SALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVII 590

Query: 444 DLLGRAGKVEEAYDLIKQMPME---PNERIWGSLVAACCLYSNMDIGILAADHIFH-LAP 499
              G  G  +EA DL++ M ++   PNE  + S+ AAC     +D G+     IF+ + P
Sbjct: 591 MAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL----RIFYVMKP 646

Query: 500 N-----QSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529
           +      S +Y  + ++  +AGR   +K   + MN
Sbjct: 647 DYGVEPSSDHYACVVDLLGRAGR---IKEAYQLMN 678



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 189/400 (47%), Gaps = 39/400 (9%)

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           L+RS V + L  +A+  Y +M V G  PD Y +P +LKA +    + +G QIH  V K G
Sbjct: 68  LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG 127

Query: 161 LDYNLFN-GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
              +     N LV +Y KCG      +V + +  ++ V+WNS+++      +++ AL+  
Sbjct: 128 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAF 187

Query: 220 REMESLRIKPDADTMASLLPSVTNTS-PENVLSVKE---------------------MFL 257
           R M    ++P + T+ S++ + +N   PE ++  K+                     M+ 
Sbjct: 188 RCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYG 247

Query: 258 KL-------------DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
           KL               ++LV+WN +++    N    EA++   +M + G+EP+  +++S
Sbjct: 248 KLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISS 307

Query: 305 VLPACGDLSALLLGRKIHRY-VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           VLPAC  L  L  G+++H Y ++   L  N  + +ALVDMY  C  +   R VFD M  +
Sbjct: 308 VLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR 367

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMS-GLCPDSIAFVSVLSACSHAGLLEEGRYY 422
            +  W +MI+ Y  +    +A+ LF  M  S GL  +S     V+ AC  +G        
Sbjct: 368 KIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAI 427

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
              + ++     R      L+D+  R GK++ A  +  +M
Sbjct: 428 HGFVVKRGLDRDRFVQ-NTLMDMYSRLGKIDIAMRIFGKM 466



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 178/380 (46%), Gaps = 50/380 (13%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++T K+LHA  + N  L  N  +G  L+  Y  C Q++  R VFD + ++ +  +N +I 
Sbjct: 318 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 377

Query: 104 SYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            Y  N    +AL ++  M    G   +  T   V+ AC  S +      IH  VVK GLD
Sbjct: 378 GYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLD 437

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            + F  N L+ MY + G +  A R+   M  +D+VTWN+M+ GY  +   ++AL +  +M
Sbjct: 438 RDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKM 497

Query: 223 ESLR-----------IKPDADTMASLLPSVTNTSP------------ENVLSV------- 252
           ++L            +KP++ T+ ++LPS    S             +N L+        
Sbjct: 498 QNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSA 557

Query: 253 --------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                         +++F ++  KN+++WNV+I  Y  +    EA+DL   M V G++PN
Sbjct: 558 LVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPN 617

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKK--LQPNLRLENALVDMYAKCGSLTEARTV 356
            ++  SV  AC     +  G +I  YV +    ++P+      +VD+  + G + EA  +
Sbjct: 618 EVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQL 676

Query: 357 FDQM--RCQDVVSWTSMISA 374
            + M        +W+S++ A
Sbjct: 677 MNMMPRDFNKAGAWSSLLGA 696



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 36/248 (14%)

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           W  ++     +++  EAV  Y+ M V GI+P+  +  ++L A  DL  + LG++IH +V 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 327 RKKLQ-PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
           +      ++ + N LV++Y KCG       VFD++  ++ VSW S+IS+     +   A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACS--------------HAGLLEEGRYYFKIMTEQYK 431
             F  ML   + P S   VSV++ACS              HA  L +G     I+     
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA 244

Query: 432 LVPRIEHFACLVDLLGRAG------------------KVEEAYDLIKQMPM---EPNERI 470
           +  ++   A    LLG  G                  ++ EA + +++M +   EP+E  
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 304

Query: 471 WGSLVAAC 478
             S++ AC
Sbjct: 305 ISSVLPAC 312


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 190/545 (34%), Positives = 305/545 (55%), Gaps = 51/545 (9%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDE-ITNKNVVF--- 97
           P ++ +++LHAQ++  Q LH +P    KL+ +Y    ++   R VF   +   N  F   
Sbjct: 109 PRLRHVQELHAQLL-KQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSPFPSS 167

Query: 98  ----FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
                  L+R+Y  N L + AL V+ ++ +       +TY  ++KA + +  L      H
Sbjct: 168 TTLLTKTLLRAYALNSLPHAALAVFLDVPLR--QRGTFTYSFLIKALAAAG-LTPVRGAH 224

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
             VVK+G   + F GN L+  Y K   L +A++V ++M ++DVV+WN+ +A   + G  D
Sbjct: 225 AHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVD 284

Query: 214 EALDVCREMESLRIKPDADTMA---------------------SLLPSVTNTSPENVLSV 252
            A  +  EM      P+ DT++                       +P     S   V+S 
Sbjct: 285 AARSMFDEM------PEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSA 338

Query: 253 ----------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
                     + +F K+  KNLV+W +M++  A   +  EA  L+ +M    IE + I+V
Sbjct: 339 YCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAV 398

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD-QMR 361
            S+L AC +  +L LG++IHR+V ++KL  +  + NAL+DM+ KCG +  A  +FD ++ 
Sbjct: 399 VSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIV 458

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            +D+VSW  +I  + M G G  A+ LF++M   G  PD++  ++VLSAC+H GL+EEGR 
Sbjct: 459 EKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRR 518

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
           +F  M   Y + P+IEH+ C+VDLLGR G ++EA D+IK+MP EPNE IWGSL++AC L+
Sbjct: 519 FFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLH 578

Query: 482 SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS- 540
            N++   LA + + +L P+ +G Y +LSNIYA+AG+W D+ + R  M   G +K  G+S 
Sbjct: 579 KNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSW 638

Query: 541 VEMND 545
           +E+N+
Sbjct: 639 IELNE 643


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 176/529 (33%), Positives = 294/529 (55%), Gaps = 37/529 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +HAQI++ +   ++  +   L+  Y   G + D+  VF+ +T  N V +N +I    +
Sbjct: 241 KMVHAQIVM-RGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTS 299

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N L+ +A  ++  M      P+ YT   V KA      + +G ++     ++G++ N+  
Sbjct: 300 NGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLV 359

Query: 168 GNGLVAMYGKCGCLKEARRVL--NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           G  L+ MY KCG L +AR V   N +       WN+M++GY+Q+G   EAL++  +M   
Sbjct: 360 GTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQN 419

Query: 226 RIKPDADTMASLLPSVTNT-----------------------SPENVLS----------- 251
            I  D  T  S+  ++  +                       S  N ++           
Sbjct: 420 GITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLED 479

Query: 252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
           V+++F +++ +++VSW  ++  Y+ +S+  EA+  +  M   G  PN  + +SVL +C  
Sbjct: 480 VRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCAS 539

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           L  L  GR++H  + +  L     +E+AL+DMYAKCGS+TEA  VFD++   D+VSWT++
Sbjct: 540 LCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAI 599

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           IS Y   G   DA+ LF +M +SG+  +++  + VL ACSH G++EEG +YF+ M + Y 
Sbjct: 600 ISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYG 659

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
           +VP +EH+AC++DLLGR G++++A + I++MPMEPNE +W +L+  C ++ N+++G +AA
Sbjct: 660 VVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAA 719

Query: 492 DHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
             I  + P  S  YVLLSN Y + G + D   +R  M  +G+KK PG S
Sbjct: 720 RKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYS 768



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 144/544 (26%), Positives = 242/544 (44%), Gaps = 85/544 (15%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y  C +      VFDE+  +NV  + V+I     + L++D    +  M   G  PD + Y
Sbjct: 165 YSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAY 224

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             ++++C G +SL +G  +H  +V  G   ++F    L+ MY K G ++++  V N M  
Sbjct: 225 SAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTE 284

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS------------V 241
            + V+WN+M++G   NG   EA D+   M++    P+  T+ S+  +            V
Sbjct: 285 HNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEV 344

Query: 242 TNTSPE-----NVL---SVKEMFLK---------LDNKNLVS------WNVMIAVYANNS 278
            N + E     NVL   ++ +M+ K         + + N ++      WN MI+ Y+ + 
Sbjct: 345 QNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSG 404

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN-LRLE 337
              EA++LY+QM  +GI  +  +  SV  A     +L  GR +H  V +  L    + + 
Sbjct: 405 CSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVN 464

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
           NA+ D Y+KCG L + R VFD+M  +D+VSWT++++AY  S  G +A+A F  M   G  
Sbjct: 465 NAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFA 524

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIM-------------------------TEQYKL 432
           P+   F SVL +C+    LE GR    ++                         TE  K+
Sbjct: 525 PNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKV 584

Query: 433 V-----PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
                 P I  +  ++    + G VE+A  L ++M +     I  + V   C+      G
Sbjct: 585 FDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSG---IKANAVTLLCVLFACSHG 641

Query: 488 ILAADHIFHLAPNQSGY--------YVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA 539
            +  + +F+    + GY        Y  + ++  + GR  D            I+KMP  
Sbjct: 642 GMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEF--------IRKMPME 693

Query: 540 SVEM 543
             EM
Sbjct: 694 PNEM 697



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 180/391 (46%), Gaps = 45/391 (11%)

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYN----LFNGNGLVAMYGKCGCLKEARRVLNDM 191
           VL+ C+   S+     +H  V+K   +      LFN    V  Y KC   + A  V ++M
Sbjct: 124 VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHV--YSKCSEFRAACGVFDEM 181

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS----------- 240
           P ++V +W  M+ G  ++G F +      EM +  I PD    ++++ S           
Sbjct: 182 PQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGK 241

Query: 241 ---------------VTNTSPENVL----SVKE---MFLKLDNKNLVSWNVMIAVYANNS 278
                            +TS  N+     S+++   +F  +   N VSWN MI+   +N 
Sbjct: 242 MVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNG 301

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
           +  EA DL+++M+     PN  ++ SV  A G L  + +G+++        ++ N+ +  
Sbjct: 302 LHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGT 361

Query: 339 ALVDMYAKCGSLTEARTVFDQ--MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
           AL+DMY+KCGSL +AR+VFD   + C     W +MIS Y  SG   +A+ L+ +M  +G+
Sbjct: 362 ALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGI 421

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
             D   + SV +A + +  L+ GR    ++ +    +  +     + D   + G +E+  
Sbjct: 422 TSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVR 481

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
            +  +M  E +   W +LV A   YS   +G
Sbjct: 482 KVFDRME-ERDIVSWTTLVTA---YSQSSLG 508


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 168/464 (36%), Positives = 260/464 (56%), Gaps = 38/464 (8%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +F +I N N+  FN +IR +  +     A H Y      G  PD  T+P ++K+C+  + 
Sbjct: 75  IFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHC 134

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           + +G Q H  ++K G + +++  N LV MY   G  + A  +   M   DVV+W SM+ G
Sbjct: 135 ISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRG 194

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           + + G                                     +V S +++F ++  KNLV
Sbjct: 195 FNKCG-------------------------------------DVESARKLFDQMPEKNLV 217

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           +W+ MI+ YA N+   +AV+L+  ++  G+  N   + SV+ +C  L AL LG + H YV
Sbjct: 218 TWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYV 277

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
            +  +  NL L  ALVDMYA+CGS+ +A  VF+ +  +D +SWT++I+   M G    ++
Sbjct: 278 VKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSL 337

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
             F+ M+ +GL P  I F +VLSACSH GL+E G   F+ M   +++ PR+EH+ C+VDL
Sbjct: 338 KYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDL 397

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           LGRAGK+EEA   + +MP++PN  +WG+L+ AC ++ N +IG      +  L P  SGYY
Sbjct: 398 LGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYY 457

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           VLLSNIYA A  W  V  +R+ M +KG+KK PG S +E++ +V 
Sbjct: 458 VLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVH 501



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 119/244 (48%), Gaps = 8/244 (3%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++R +  CG +   R +FD++  KN+V ++ +I  Y  N  +  A+ ++K +   G   +
Sbjct: 191 MIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRAN 250

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
                 V+ +C+   +L +G + H  VVK G+  NL  G  LV MY +CG + +A  V  
Sbjct: 251 ETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFE 310

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS-PEN 248
           D+P +D ++W +++AG A +G  + +L     M    + P   T  ++L + ++    E 
Sbjct: 311 DLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVER 370

Query: 249 VLSVKEMFLKLDNK---NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
              + E  +K D++    L  +  M+ +        EA    L+M V   +PNA    ++
Sbjct: 371 GFQIFES-MKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPV---KPNAPVWGAL 426

Query: 306 LPAC 309
           L AC
Sbjct: 427 LGAC 430



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 2/145 (1%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           N  +G  L+  Y  CG +     VF+++  ++ + +  LI     +     +L  +  M 
Sbjct: 285 NLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMV 344

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYNLFNGNGLVAMYGKCGCL 181
             G  P   T+  VL ACS    +  G QI  S+ +   ++  L +   +V + G+ G L
Sbjct: 345 EAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKL 404

Query: 182 KEARRVLNDMPSK-DVVTWNSMVAG 205
           +EA R +  MP K +   W +++  
Sbjct: 405 EEAERFVLKMPVKPNAPVWGALLGA 429


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 187/549 (34%), Positives = 304/549 (55%), Gaps = 50/549 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++HA  +    L  N  I   L+  YG  G++  ++ +      +++V +N ++ S   
Sbjct: 135 KQVHAYGLRKGEL--NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 192

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLF 166
           N    +AL   + M + G +PD +T   VL ACS    L  G ++H   +K G LD N F
Sbjct: 193 NEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 252

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME-SL 225
            G+ LV MY  C  +   RRV + M  + +  WN+M+AGY+QN    EAL +   ME S 
Sbjct: 253 VGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESA 312

Query: 226 RIKPDADTMASLLPSVTNTSP----------------------ENVLS-----------V 252
            +  ++ TMA ++P+   +                        +N L             
Sbjct: 313 GLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIA 372

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME-----------VHGIEPNAIS 301
             +F K+++++LV+WN MI  Y  +    +A+ L  +M+              ++PN+I+
Sbjct: 373 MRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSIT 432

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           + ++LP+C  LSAL  G++IH Y  +  L  ++ + +ALVDMYAKCG L  +R VFDQ+ 
Sbjct: 433 LMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 492

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            ++V++W  +I AYGM G G +A+ L   M++ G+ P+ + F+SV +ACSH+G+++EG  
Sbjct: 493 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 552

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNER-IWGSLVAACCL 480
            F +M   Y + P  +H+AC+VDLLGRAG+++EAY L+  MP + N+   W SL+ A  +
Sbjct: 553 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 612

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           ++N++IG +AA ++  L PN + +YVLL+NIY+ AG W     VR+ M  +G++K PG S
Sbjct: 613 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 672

Query: 541 -VEMNDQVQ 548
            +E  D+V 
Sbjct: 673 WIEHGDEVH 681



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 153/575 (26%), Positives = 267/575 (46%), Gaps = 96/575 (16%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++  K++HA +    +   + ++   L+  Y  CG       VFD I+ +N V +N LI
Sbjct: 25  DMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLI 84

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG---SNSLLVGLQIHCSVVKV 159
            S  +   +  AL  ++ M     +P  +T   V+ ACS       L++G Q+H   ++ 
Sbjct: 85  SSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRK 144

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G + N F  N LVAMYGK G L  ++ +L     +D+VTWN++++   QN +  EAL+  
Sbjct: 145 G-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYL 203

Query: 220 REMESLRIKPDADTMASLLPSVTN-----TSPE--------------------------- 247
           REM    ++PD  T++S+LP+ ++     T  E                           
Sbjct: 204 REMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCN 263

Query: 248 --NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVAS 304
              VLS + +F  + ++ +  WN MIA Y+ N    EA+ L++ ME   G+  N+ ++A 
Sbjct: 264 CKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAG 323

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           V+PAC    A      IH +V ++ L  +  ++N L+DMY++ G +  A  +F +M  +D
Sbjct: 324 VVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRD 383

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKML-----------MSGLCPDSIAFVSVLSACSHA 413
           +V+W +MI+ Y  S    DA+ L  KM               L P+SI  +++L +C+  
Sbjct: 384 LVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAAL 443

Query: 414 GLLEEGR----YYFK------------------------IMTEQYKLVPR--IEHFACLV 443
             L +G+    Y  K                        +  + +  +P+  +  +  ++
Sbjct: 444 SALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVII 503

Query: 444 DLLGRAGKVEEAYDLIKQMPME---PNERIWGSLVAACCLYSNMDIGILAADHIFH-LAP 499
              G  G  +EA DL++ M ++   PNE  + S+ AAC     +D G+     IF+ + P
Sbjct: 504 MAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL----RIFYVMKP 559

Query: 500 N-----QSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529
           +      S +Y  + ++  +AGR   +K   + MN
Sbjct: 560 DYGVEPSSDHYACVVDLLGRAGR---IKEAYQLMN 591



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 177/380 (46%), Gaps = 39/380 (10%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN-GNGLVAMYGKCG 179
           M V G  PD Y +P +LKA +    + +G QIH  V K G   +     N LV +Y KCG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
                 +V + +  ++ V+WNS+++      +++ AL+  R M    ++P + T+ S++ 
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 240 SVTNTS-PENVLSVKE---------------------MFLKL-------------DNKNL 264
           + +N   PE ++  K+                     M+ KL               ++L
Sbjct: 121 ACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDL 180

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           V+WN +++    N    EA++   +M + G+EP+  +++SVLPAC  L  L  G+++H Y
Sbjct: 181 VTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAY 240

Query: 325 -VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383
            ++   L  N  + +ALVDMY  C  +   R VFD M  + +  W +MI+ Y  +    +
Sbjct: 241 ALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKE 300

Query: 384 AVALFSKMLMS-GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL 442
           A+ LF  M  S GL  +S     V+ AC  +G           + ++     R      L
Sbjct: 301 ALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQ-NTL 359

Query: 443 VDLLGRAGKVEEAYDLIKQM 462
           +D+  R GK++ A  +  +M
Sbjct: 360 MDMYSRLGKIDIAMRIFGKM 379



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 178/380 (46%), Gaps = 50/380 (13%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++T K+LHA  + N  L  N  +G  L+  Y  C Q++  R VFD + ++ +  +N +I 
Sbjct: 231 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 290

Query: 104 SYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            Y  N    +AL ++  M    G   +  T   V+ AC  S +      IH  VVK GLD
Sbjct: 291 GYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLD 350

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            + F  N L+ MY + G +  A R+   M  +D+VTWN+M+ GY  +   ++AL +  +M
Sbjct: 351 RDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKM 410

Query: 223 ESLR-----------IKPDADTMASLLPSVTNTSP------------ENVLSV------- 252
           ++L            +KP++ T+ ++LPS    S             +N L+        
Sbjct: 411 QNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSA 470

Query: 253 --------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                         +++F ++  KN+++WNV+I  Y  +    EA+DL   M V G++PN
Sbjct: 471 LVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPN 530

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKK--LQPNLRLENALVDMYAKCGSLTEARTV 356
            ++  SV  AC     +  G +I  YV +    ++P+      +VD+  + G + EA  +
Sbjct: 531 EVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQL 589

Query: 357 FDQM--RCQDVVSWTSMISA 374
            + M        +W+S++ A
Sbjct: 590 MNMMPRDFNKAGAWSSLLGA 609


>gi|356522600|ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Glycine max]
          Length = 644

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 183/542 (33%), Positives = 291/542 (53%), Gaps = 42/542 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV- 106
           K+LHA +I     H   S+  +++  Y  C +  D   +F+E++ +NVV +N+LIR  V 
Sbjct: 70  KQLHAHLIKFGFCHV-LSLQNQILGVYLKCTEADDAEKLFEELSVRNVVSWNILIRGIVG 128

Query: 107 ------NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
                 N+         +K M +    PD  T+  +   C   + + +G Q+HC  VK+G
Sbjct: 129 CGDANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCFAVKLG 188

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG---------- 210
           LD + F G+ LV +Y +CG ++ ARRV   +  +D+V WN M++ YA N           
Sbjct: 189 LDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHRDLVVWNVMISCYALNCLPEEAFVMFN 248

Query: 211 --RFDEA----------LDVCREMES-----------LRIKPDADTMASLLPSVTNTSPE 247
             R+D A          L +C  +E            LR+  D+D + +          E
Sbjct: 249 LMRWDGANGDEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFDSDVLVASALINMYAKNE 308

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
           N++    +F  +  +N+V+WN +I  Y N     E + L  +M   G  P+ ++++S + 
Sbjct: 309 NIVDAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDELTISSTIS 368

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
            CG +SA+    + H +  +   Q  L + N+L+  Y+KCGS+T A   F   R  D+VS
Sbjct: 369 LCGYVSAITETMQAHAFAVKSSFQEFLSVANSLISAYSKCGSITSACKCFRLTREPDLVS 428

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           WTS+I+AY   G   +A  +F KML  G+ PD I+F+ VLSACSH GL+ +G +YF +MT
Sbjct: 429 WTSLINAYAFHGLAKEATEVFEKMLSCGIIPDQISFLGVLSACSHCGLVTKGLHYFNLMT 488

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
             YK+VP   H+ CLVDLLGR G + EA++ ++ MPME      G+ VA+C L++N+ + 
Sbjct: 489 SVYKIVPDSGHYTCLVDLLGRYGLINEAFEFLRSMPMEAESNTLGAFVASCNLHANIGLA 548

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
             AA+ +F + P ++  Y ++SNIYA    W DV+RVR+ M +K   ++PG S +E+ +Q
Sbjct: 549 KWAAEKLFTIEPEKNVNYAVMSNIYASHRHWSDVERVRRMMGNKCDARVPGCSWIEITNQ 608

Query: 547 VQ 548
           V 
Sbjct: 609 VH 610



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/401 (22%), Positives = 169/401 (42%), Gaps = 52/401 (12%)

Query: 123 VHGFDPDCYTYPCV--LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
            H  DP      C   LK  +    L  G Q+H  ++K G  + L   N ++ +Y KC  
Sbjct: 41  THFRDPHTVHLFCANALKVSAKRALLPEGKQLHAHLIKFGFCHVLSLQNQILGVYLKCTE 100

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE-------ALDVCREMESLRIKPDADT 233
             +A ++  ++  ++VV+WN ++ G    G  +E            + M    + PD+ T
Sbjct: 101 ADDAEKLFEELSVRNVVSWNILIRGIVGCGDANENDSNQQQCFSYFKRMLLELVVPDSTT 160

Query: 234 MASLLPSVTNTSPEN---------------------------------VLSVKEMFLKLD 260
              L          +                                 V + + +FL + 
Sbjct: 161 FNGLFGVCVKFHDIDMGFQLHCFAVKLGLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQ 220

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
           +++LV WNVMI+ YA N +P EA  ++  M   G   +  + +++L  C  L     G++
Sbjct: 221 HRDLVVWNVMISCYALNCLPEEAFVMFNLMRWDGANGDEFTFSNLLSICDSLEYYDFGKQ 280

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
           +H ++ R     ++ + +AL++MYAK  ++ +A  +FD M  ++VV+W ++I  YG   +
Sbjct: 281 VHGHILRLSFDSDVLVASALINMYAKNENIVDAHRLFDNMVIRNVVAWNTIIVGYGNRRE 340

Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA 440
           G + + L  +ML  G  PD +   S +S C +   + E      +    + +    + F 
Sbjct: 341 GNEVMKLLREMLREGFSPDELTISSTISLCGYVSAITE-----TMQAHAFAVKSSFQEFL 395

Query: 441 ----CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
                L+    + G +  A    + +  EP+   W SL+ A
Sbjct: 396 SVANSLISAYSKCGSITSACKCFR-LTREPDLVSWTSLINA 435



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 18/178 (10%)

Query: 291 EVHGIEPNAISV--ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           E H  +P+ + +  A+ L      + L  G+++H ++ +      L L+N ++ +Y KC 
Sbjct: 40  ETHFRDPHTVHLFCANALKVSAKRALLPEGKQLHAHLIKFGFCHVLSLQNQILGVYLKCT 99

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG---------YDAVALFSKMLMSGLCPD 399
              +A  +F+++  ++VVSW  +I   G+ G G             + F +ML+  + PD
Sbjct: 100 EADDAEKLFEELSVRNVVSWNILIR--GIVGCGDANENDSNQQQCFSYFKRMLLELVVPD 157

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEA 455
           S  F  +   C     ++ G   F++     KL   ++ F  + LVDL  + G VE A
Sbjct: 158 STTFNGLFGVCVKFHDIDMG---FQLHCFAVKLGLDLDCFVGSVLVDLYAQCGLVENA 212


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 181/559 (32%), Positives = 308/559 (55%), Gaps = 41/559 (7%)

Query: 24  TQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT 83
           T  +LLS  A N  L K       ++LH+  +I   + S+  +   L+  Y  C  +   
Sbjct: 316 TVASLLSACASNGALCKG------EQLHS-YVIKAGISSDMIVEGALLDLYVNCSDIKTA 368

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
             +F     +NVV +NV++ ++       ++  +++ M + G  P+ +TYP +L+ C+  
Sbjct: 369 HEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSV 428

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
            +L +G QIH  V+K G  +N++  + L+ MY K G L  A  +L  +   DVV+W +++
Sbjct: 429 GALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALI 488

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT--------------------- 242
           +GYAQ+  F EAL   +EM +  I+ D    +S + +                       
Sbjct: 489 SGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYS 548

Query: 243 -NTSPENVL--------SVKEMFL---KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
            + S  N L         +KE +L   K+D K+ +SWN +I+ +A +    +A+ ++ QM
Sbjct: 549 EDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQM 608

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
               +E +  +  S + A  +++ +  G++IH  + ++    ++ + NAL+  YAKCGS+
Sbjct: 609 NRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSI 668

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
            +AR  F +M  ++ VSW +MI+ Y   G G +AV LF KM   G  P+ + FV VLSAC
Sbjct: 669 EDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSAC 728

Query: 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI 470
           SH GL+ +G  YF+ M++++ LVP+  H+AC+VDL+ RAG +  A   I++MP+EP+  I
Sbjct: 729 SHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATI 788

Query: 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530
           W +L++AC ++ N+++G  AA H+  L P  S  YVLLSN+YA +G+W    + R+ M +
Sbjct: 789 WRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRN 848

Query: 531 KGIKKMPGAS-VEMNDQVQ 548
           +G+KK PG S +E+ + V 
Sbjct: 849 RGVKKEPGRSWIEVKNSVH 867



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 122/470 (25%), Positives = 234/470 (49%), Gaps = 49/470 (10%)

Query: 48  KKLHAQIII----NQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           KKLH +I+     N+ +  N     KL+  Y A G +     VF+++ N++V  ++ +I 
Sbjct: 30  KKLHGKILKLGFGNESVLCN-----KLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIIS 84

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN-SLLVGLQIHCSVVKVGLD 162
            ++   +    L ++  M      P   ++  VL+ACSG    +    QIH  ++  GL 
Sbjct: 85  GFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLL 144

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            +    N L+ +Y K G +  AR+V +++ +KD V+W +M++G++QNG  +EA+ +  EM
Sbjct: 145 CSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEM 204

Query: 223 ESLRIKPDADTMASLLPSVTN------------------TSPE---------------NV 249
            +  I P     +S+L   T                   +S E               N 
Sbjct: 205 HTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNF 264

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
           +S +++F K+ +K+ VS+N +I+  A       A++L+ +M+   ++P+ ++VAS+L AC
Sbjct: 265 VSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSAC 324

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
               AL  G ++H YV +  +  ++ +E AL+D+Y  C  +  A  +F   + ++VV W 
Sbjct: 325 ASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWN 384

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
            M+ A+G      ++  +F +M + GL P+   + S+L  C+  G L+ G    +I T+ 
Sbjct: 385 VMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGE---QIHTQV 441

Query: 430 YKLVPRIEHFAC--LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            K   +   + C  L+D+  + GK++ A+ +++ +  E +   W +L++ 
Sbjct: 442 IKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT-EDDVVSWTALISG 490



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 183/428 (42%), Gaps = 46/428 (10%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M   G   +C TY  +L  C  S SL+   ++H  ++K+G        N LV +Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL-- 238
           L    +V  DMP++ V +W+ +++G+ +    +  LD+   M    + P   + AS+L  
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 239 --------------------------PSVTN------TSPENVLSVKEMFLKLDNKNLVS 266
                                     P ++N           ++S +++F  L  K+ VS
Sbjct: 121 CSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVS 180

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           W  MI+ ++ N    EA+ L+ +M   GI P     +SVL  C  +    +G ++H  V 
Sbjct: 181 WVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVF 240

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           +        + NALV +Y++  +   A  VF +M+ +D VS+ S+IS     G    A+ 
Sbjct: 241 KYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALE 300

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YYFKIMTEQYKLVPRIEHFACL 442
           LF+KM    L PD +   S+LSAC+  G L +G     Y  K       +V        L
Sbjct: 301 LFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVE-----GAL 355

Query: 443 VDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNM--DIGILAADHIFHLAPN 500
           +DL      ++ A+++      E N  +W  ++ A     N+     I     I  L PN
Sbjct: 356 LDLYVNCSDIKTAHEMFLTAQTE-NVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPN 414

Query: 501 QSGYYVLL 508
           Q  Y  +L
Sbjct: 415 QFTYPSIL 422


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 165/480 (34%), Positives = 271/480 (56%), Gaps = 42/480 (8%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G +   R VF+E+  K  V +N +I  YV++ +  +A  +++ M +     D +T+  VL
Sbjct: 242 GDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVL 301

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDY----NLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
            AC+ +     G  +H  + ++  ++     L   N LV +Y KCG +  ARR+ ++M S
Sbjct: 302 SACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKS 361

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK 253
           KDVV+WN++++GY ++   D+A++V  EM                               
Sbjct: 362 KDVVSWNTILSGYVESSCLDKAVEVFEEMP------------------------------ 391

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
                   KN +SW VM++ Y +     +A+ L+ +M    ++P   + A  + ACG+L 
Sbjct: 392 -------YKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELG 444

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           +L  G+++H ++ +   + +    NAL+ MYA+CG++ EA  +F  M   D VSW +MIS
Sbjct: 445 SLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMIS 504

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
           A G  G G +A+ LF +M+  G+ PD I+F++VL+AC+H+GL++EG  YF+ M   + ++
Sbjct: 505 ALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGII 564

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P  +H+  L+DLLGRAG++ EA DLIK MP EP   IW ++++ C    +M++G  AAD 
Sbjct: 565 PGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQ 624

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
           +F + P   G Y+LLSN Y+ AGRW D  RVRK M  +G+KK PG S +E  ++V +  +
Sbjct: 625 LFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVV 684


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 162/416 (38%), Positives = 246/416 (59%), Gaps = 37/416 (8%)

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G  P+ +T   V+KAC+   SL  G Q H  ++K+G + ++     LV MY +CG L++A
Sbjct: 5   GVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDA 64

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
             V + M  +   TWN+M+ G+AQN    +AL                            
Sbjct: 65  GHVFDKMSERSTRTWNAMITGHAQNRDMKKAL---------------------------- 96

Query: 245 SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
                    ++F ++  +++VSW  +IA YA N    E+++++ QM   G++ +   + S
Sbjct: 97  ---------KLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGS 147

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           VL AC DL+AL LGR+ H YV +     ++ + +ALVDMYAK GS+ +A  VFD+M  ++
Sbjct: 148 VLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRN 207

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
            VSW S+I+     G+G DAV LF +ML +G+ P+ I+FV VLSACSH GL+ EGR YF 
Sbjct: 208 EVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFN 267

Query: 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNM 484
           +MT+ Y +VP + H+ C++DLLGRAG ++EA + I  MP+EP+  +WG+L+ AC ++ N 
Sbjct: 268 LMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNT 327

Query: 485 DIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           ++    A+H+  +    +G YVLLSNIYA AG+W D  +VRK M  +G+ K PG S
Sbjct: 328 ELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYS 383



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 154/349 (44%), Gaps = 44/349 (12%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFD-------------------------- 88
           II     S+  +   L+  Y  CG + D  HVFD                          
Sbjct: 36  IIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKA 95

Query: 89  -----EITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
                E++ ++VV +  +I  Y  N    ++L+V+  M   G   D +    VL AC+  
Sbjct: 96  LKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADL 155

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
            +L +G Q H  VV+ G   ++  G+ LV MY K G +++A +V + MP ++ V+WNS++
Sbjct: 156 AALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSII 215

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKN 263
            G AQ+GR ++A+ +  +M    IKP+  +   +L + ++T    +++    +  L  +N
Sbjct: 216 TGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTG---LVNEGRGYFNLMTQN 272

Query: 264 ------LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
                 +  +  MI +        EA +    M V   EP+     ++L AC       L
Sbjct: 273 YGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPV---EPDVSVWGALLGACRIHGNTEL 329

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
            ++I  ++   ++Q    +   L ++YA  G   +A  V   M+ + V+
Sbjct: 330 AKRIAEHLLGMEVQI-AGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVM 377


>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 606

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 183/514 (35%), Positives = 287/514 (55%), Gaps = 37/514 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+++Y   G   +   +FDE+ +++V+ +  +I  Y +   +  A +V+ NM   G  P+
Sbjct: 47  LIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDGVKPN 106

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD-YNLFNGNGLVAMYGKC-GCLKEARRV 187
            +T   VLKAC    +LL G  +H   +K+G    +++  N L+ MY  C   +  AR V
Sbjct: 107 AFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDNARLV 166

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM--ESLRIKPDADTMA---------- 235
             D+ +K+ V+W +++ GY         L V R+M  E   + P + ++A          
Sbjct: 167 FEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSACASIGSS 226

Query: 236 ----SLLPSVTNTSPENVLSV-----------------KEMFLKLDNKNLVSWNVMIAVY 274
                +  +V N   E+ L V                 K++F ++  K+ ++WN +IA +
Sbjct: 227 NLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIAGF 286

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
                  E++ ++ QM   G  PN  +  SV+ AC +L+ L  G+++H  +  + L  NL
Sbjct: 287 ETLD-SYESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHRGLDNNL 345

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            L NAL+DMYAKCG++ ++  +F  MR  ++VSWTSM+  YG  G G +AV LF++M+ S
Sbjct: 346 ELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGS 405

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           G+ PD I F++VLSACSHAGL++EG  YF++MT  Y + P  + +AC+VDLL RAG+V+E
Sbjct: 406 GIKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPDRDIYACVVDLLSRAGRVKE 465

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           AY+LI+ MP +P+E IW +L+ AC  Y    I  LAA  +  + PN++G YVLLSN  A 
Sbjct: 466 AYELIENMPFKPDESIWVALLGACKKYKQPSIQKLAALKVLEMKPNKAGTYVLLSNFSAA 525

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
            G W D   +RK M S   KK  G S +E+ +QV
Sbjct: 526 EGNWADFASLRKLMRSTKSKKEVGRSWIELKNQV 559



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 106/196 (54%), Gaps = 2/196 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++HA +I N    SN  +   ++  Y  C    + + +F E+T K+ + +N LI  +  
Sbjct: 230 KQVHAAVI-NHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIAGF-E 287

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
               Y++L ++  M   GF P+C+T+  V+ AC+    L  G Q+H  ++  GLD NL  
Sbjct: 288 TLDSYESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHRGLDNNLEL 347

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY KCG + ++ ++ + M   ++V+W SM+ GY  +G   EA+D+  EM    I
Sbjct: 348 SNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGI 407

Query: 228 KPDADTMASLLPSVTN 243
           KPD     ++L + ++
Sbjct: 408 KPDKIVFMAVLSACSH 423



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 42/75 (56%)

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           L   L+  Y   GS  EA T+FD+M  +DV++WTSMI+ Y        A  +F+ ML  G
Sbjct: 43  LTTDLIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDG 102

Query: 396 LCPDSIAFVSVLSAC 410
           + P++    +VL AC
Sbjct: 103 VKPNAFTVSAVLKAC 117



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 7/162 (4%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LH  II ++ L +N  +   L+  Y  CG + D+  +F  + + N+V +  ++  Y  
Sbjct: 330 QQLHGGII-HRGLDNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGA 388

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGL---QIHCSVVKVGLDYN 164
           +    +A+ ++  M   G  PD   +  VL ACS +  +  GL   ++  S   V  D +
Sbjct: 389 HGHGKEAVDLFNEMVGSGIKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPDRD 448

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAG 205
           ++    +V +  + G +KEA  ++ +MP K D   W +++  
Sbjct: 449 IY--ACVVDLLSRAGRVKEAYELIENMPFKPDESIWVALLGA 488


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/517 (33%), Positives = 293/517 (56%), Gaps = 40/517 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDP 128
           L + Y    +  D R VFD + + + + +N L+     +    +AL  +  M   G   P
Sbjct: 155 LAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPGS----EALEAFVRMVDAGRVRP 210

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D  T    L+A + ++ + +G  +H   VK GL  +     GL+++Y KCG +  A+ + 
Sbjct: 211 DSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLF 270

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE- 247
           + M + D+V +N++++GY+ NG  + ++++ +E+ +   +P++ T+ +++P  +    E 
Sbjct: 271 DRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHEL 330

Query: 248 --------------------------------NVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
                                           ++ S + +F  +  K + SWN MI+ YA
Sbjct: 331 LARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYA 390

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            N +   AV L+  M+   ++PN I+++S L AC  L AL LG+ +HR + ++KL+ N+ 
Sbjct: 391 QNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVY 450

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           +  AL+DMYAKCGS+ EAR++FD+M  ++VVSW +MIS YG+ GQG +A+ L+  ML + 
Sbjct: 451 VMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDAR 510

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + P S  F+SV+ ACSH GL++EG+  F++MT +Y++ P IEH  C+VDLLGRAGK+ EA
Sbjct: 511 ILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEA 570

Query: 456 YDLIKQMPMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
            +LI + P       +WG+L+ AC ++ N D+  LA+  +F L    +GYYVLLSN+Y  
Sbjct: 571 LELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTS 630

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
              + +   VR+   ++ + K PG + +E+ D+  + 
Sbjct: 631 KKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVF 667



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 180/366 (49%), Gaps = 40/366 (10%)

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H   V  G   + F  + L  +Y K     +AR+V + +PS D + WN+++AG   +  
Sbjct: 136 LHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPGS-- 193

Query: 212 FDEALDV-CREMESLRIKPDADTMASLLPSVTNTS-------------------PENVL- 250
             EAL+   R +++ R++PD+ T+AS L +    S                    E+V+ 
Sbjct: 194 --EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVT 251

Query: 251 -------------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297
                        S + +F ++DN +LV++N +I+ Y+ N M   +V+L+ ++   G  P
Sbjct: 252 GLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRP 311

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           N+ ++ +V+P        LL R +H +V + +L  +  +  AL  +Y +   +  AR++F
Sbjct: 312 NSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIF 371

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           D M  + + SW +MIS Y  +G    AVALF  M    + P+ I   S LSAC+H G L 
Sbjct: 372 DAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALS 431

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            G++  +I++++ KL   +     L+D+  + G + EA  +  +M    N   W ++++ 
Sbjct: 432 LGKWVHRIISKE-KLELNVYVMTALIDMYAKCGSIAEARSIFDRMD-NKNVVSWNAMISG 489

Query: 478 CCLYSN 483
             L+  
Sbjct: 490 YGLHGQ 495



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 98/189 (51%), Gaps = 1/189 (0%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           LHA  ++   L ++  +   L   Y     M   R +FD +  K +  +N +I  Y  N 
Sbjct: 335 LHA-FVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNG 393

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
           L   A+ +++ M      P+  T    L AC+   +L +G  +H  + K  L+ N++   
Sbjct: 394 LTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMT 453

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            L+ MY KCG + EAR + + M +K+VV+WN+M++GY  +G+  EAL + ++M   RI P
Sbjct: 454 ALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILP 513

Query: 230 DADTMASLL 238
            + T  S++
Sbjct: 514 TSSTFLSVI 522



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 46  TLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           +L K   +II  + L  N  +   L+  Y  CG + + R +FD + NKNVV +N +I  Y
Sbjct: 431 SLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGY 490

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
             +    +AL +YK+M      P   T+  V+ ACS    +  G ++   +     +Y +
Sbjct: 491 GLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTN---EYRI 547

Query: 166 FNG----NGLVAMYGKCGCLKEARRVLNDMPSKDV--VTWNSMVAG 205
             G      +V + G+ G L EA  ++++ P   +    W +++  
Sbjct: 548 TPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGA 593


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 176/499 (35%), Positives = 279/499 (55%), Gaps = 39/499 (7%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD-PDCYTYPCVLKACSGSN 144
           VF      +V+ +N ++R++VN+ +   AL  Y  M     + PD +T+P +LK C+   
Sbjct: 34  VFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLL 93

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
              VG  +H  VVK  L  +L+    L+ MY  CG LK AR +   M  ++ V W SM++
Sbjct: 94  EFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMIS 153

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV--------------- 249
           GY +N   +EAL + ++ME     PD  TMA+L+ +        V               
Sbjct: 154 GYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKI 213

Query: 250 ------------------LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
                              + +++F KL +K++ +W+ +I  Y  N+   EA+ L+   E
Sbjct: 214 CAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLF--RE 271

Query: 292 VHG---IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           V G   + PN +++ +V+ AC  L  L  GR +H Y+ R +   ++ L N+L+DM++KCG
Sbjct: 272 VAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCG 331

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
            +  A+ +FD M  +D++SW SM++ + + G G +A+A F  M  + L PD I F+ VL+
Sbjct: 332 DIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLT 391

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
           ACSHAGL++EG+  F  +   Y +  + EH+ C+VDLL RAG + EA + I+ MP++P+ 
Sbjct: 392 ACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDG 451

Query: 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
            IWGS++ AC +Y+N+++G  AA  +  L P   G Y+LLSNIYAK   W +VK+VR+ M
Sbjct: 452 AIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELM 511

Query: 529 NSKGIKKMPGASVEMNDQV 547
           N KGI+K PG S  + D +
Sbjct: 512 NEKGIQKTPGCSSVVIDNI 530


>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
          Length = 546

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 183/534 (34%), Positives = 304/534 (56%), Gaps = 27/534 (5%)

Query: 27  TLLSGDACNDI---LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT 83
           TL S D  + I   L       TL+++HA+II  + LH +  +  + +    +      T
Sbjct: 18  TLRSFDTTSSISTLLKACTTTSTLEQVHARII-RKGLHQDHFLISQFLTLCNSLSNFSYT 76

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
             VF+ +++ + V +N  I+ Y  NY     + ++  M      PD +TYP ++KACS  
Sbjct: 77  TSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKV 136

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
             +  G+  H S V+ G+  ++F    L+ +YGKCG +  AR+V ++M  ++VV+W +M+
Sbjct: 137 CGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMI 196

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKN 263
           AGYA      EA  +  EM     + +A +  +++         ++ S ++MF ++ ++N
Sbjct: 197 AGYASFSDLVEARKLFDEMP----EKNAVSWNAIISGYVKCG--DLRSARKMFDEMPHRN 250

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVH----------------GIEPNAISVASVLP 307
           +VS+  MI  YA +   A A  ++ +                     ++P+   + S++ 
Sbjct: 251 VVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLMS 310

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPN-LRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
           AC  + +L L + +  YV +  +  +   +  AL+DM AKCGS+  A  +F++M  +D++
Sbjct: 311 ACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLI 370

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           S+ SM+    + G G  AV+LFS+ML  GL PD +AF  +L+ACS AGL++EG YYF+ M
Sbjct: 371 SYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESM 430

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
              Y +VP  +H+AC+VDLLGRAG+++EAY+L+K MP+EP+   WG+L+ AC L+ ++++
Sbjct: 431 KTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIEL 490

Query: 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           G + AD +F L P  +G YVLLSNIYA A +W DV  +R  M  +GI+K+PG S
Sbjct: 491 GEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCS 544


>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Vitis vinifera]
          Length = 515

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 175/508 (34%), Positives = 286/508 (56%), Gaps = 44/508 (8%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           LKK+HA ++    L  +  +  K++      G+      +F  + + N   +N +IR+Y 
Sbjct: 4   LKKIHAHVV-KFSLSXSSFLVTKMVDMCNHHGETEYANLLFKRVADPNAFLYNAMIRAYK 62

Query: 107 NNYLYYDALHVYKNMSVHGFD-----PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           +N +Y  A+ V+K M  H        PD +T+P V+K C+G     +G Q+H    K G 
Sbjct: 63  HNKVYILAITVHKQMLGHSHGENPXFPDKFTFPFVVKXCAGLMCYNLGKQVHGHAFKFGP 122

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             N    N LV MY KC  L +A RV  +M  +D V+WN++++G+ + G+   A      
Sbjct: 123 KSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRA------ 176

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
                                          + +F +L +K + SW  +++ YA     A
Sbjct: 177 -------------------------------RAIFEELQDKTIFSWTAIVSGYARIGCHA 205

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
            A++ + +M++  IE + IS+ SVLPAC  L AL LG+ IH Y ++     ++ + NAL+
Sbjct: 206 VALEFFRRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNALI 265

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           ++YAK GS+ E R +F +M  +DV+SW++MI      G+  +A+ LF +M  + + P+ I
Sbjct: 266 EVYAKRGSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNII 325

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
            FV +LSAC+HAGLL EG  YF+ M     + P +EH+ CLV+LLG +G++++A +LIK+
Sbjct: 326 TFVGLLSACAHAGLLNEGLGYFESMERDDNIEPGVEHYGCLVNLLGLSGRLDQALELIKK 385

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
           MPM+P+  IWG L ++C  + N++I  +A +H+  L P+ +G Y+ LSN+YA  G+W  V
Sbjct: 386 MPMKPDSDIWGLLSSSCRSHGNLEIVAIAMEHLLELEPDDTGNYITLSNLYADLGKWDGV 445

Query: 522 KRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
            R+RK M+SK + K PG +S+E+++ VQ
Sbjct: 446 SRMRKLMSSKYMNKTPGCSSIEVDNMVQ 473


>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 178/554 (32%), Positives = 301/554 (54%), Gaps = 40/554 (7%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           P I+    LH  ++      ++  +   L+  Y  C  +   R VFDE+  ++VV +N +
Sbjct: 60  PSIQHGTMLHGHVL-KLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAM 118

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL---LVGLQIHCSVVK 158
           + +Y        AL + K M V GF+P   T+  +L   S  +S    L+G  IHC ++K
Sbjct: 119 VSAYSRRSSMDQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIK 178

Query: 159 VGLDY-NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           +G+ Y  +   N L+ MY +   + EAR+V + M  K +++W +M+ GY + G   EA  
Sbjct: 179 LGIVYLEVSLANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYG 238

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSP----------------------ENVL----- 250
           +  +M+   +  D     +L+                              EN+L     
Sbjct: 239 LFYQMQHQSVGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYA 298

Query: 251 ------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
                 S + +F  +  K+++SW  MIA Y +   P EA+DL+ +M    I PN  ++A+
Sbjct: 299 KCGNLTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLAT 358

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           V+ AC DL +L +G++I  Y+    L+ + +++ +L+ MY+KCGS+ +AR VF+++  +D
Sbjct: 359 VVSACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTDKD 418

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMS-GLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           +  WTSMI++Y + G G +A++LF KM  + G+ PD+I + SV  ACSH+GL+EEG  YF
Sbjct: 419 LTVWTSMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLKYF 478

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
           K M + + + P +EH  CL+DLLGR G+++ A + I+ MP +   ++WG L++AC ++ N
Sbjct: 479 KSMQKDFGITPTVEHCTCLIDLLGRVGQLDLALNAIQGMPPDVQAQVWGPLLSACRIHGN 538

Query: 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VE 542
           +++G LA   +   +P  SG YVL++N+Y   G+W +   +R  M+ KG+ K  G S VE
Sbjct: 539 VELGELATVRLLDSSPGSSGSYVLMANLYTSLGKWKEAHMMRNSMDGKGLVKESGWSQVE 598

Query: 543 MNDQVQIIALPLRS 556
           + D     A+  +S
Sbjct: 599 VTDTYHTFAVGNQS 612



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 209/424 (49%), Gaps = 47/424 (11%)

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           +++  +N++IR   NN  +   L++Y +M+  G   +  TYP +LKAC+   S+  G  +
Sbjct: 9   RSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTML 68

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  V+K+G   + F    LV MY KC  +  AR+V ++MP + VV+WN+MV+ Y++    
Sbjct: 69  HGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSM 128

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTN--------------------------TSP 246
           D+AL + +EM  L  +P A T  S+L   +N                           S 
Sbjct: 129 DQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEVSL 188

Query: 247 ENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
            N L             +++F  +D K+++SW  MI  Y       EA  L+ QM+   +
Sbjct: 189 ANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSV 248

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
             + +   +++  C  +  LLL   +H  V +        +EN L+ MYAKCG+LT AR 
Sbjct: 249 GIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSARR 308

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           +FD +  + ++SWTSMI+ Y   G   +A+ LF +M+ + + P+     +V+SAC+  G 
Sbjct: 309 IFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACADLGS 368

Query: 416 LEEGRYYFKIMTEQYKLVPRIEH----FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIW 471
           L  G+       E+Y  +  +E        L+ +  + G + +A ++ +++  + +  +W
Sbjct: 369 LSIGQE-----IEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVT-DKDLTVW 422

Query: 472 GSLV 475
            S++
Sbjct: 423 TSMI 426



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 161/373 (43%), Gaps = 38/373 (10%)

Query: 23  STQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD 82
           ST  ++LSG +    LD +      K +H  +I    ++   S+   LM  Y     M +
Sbjct: 148 STFVSILSGYSN---LDSFEFHLLGKSIHCCLIKLGIVYLEVSLANSLMGMYVQFCLMDE 204

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
            R VFD +  K+++ +  +I  YV      +A  ++  M       D   +  ++  C  
Sbjct: 205 ARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVFLNLISGCIQ 264

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
              LL+   +H  V+K G +      N L+ MY KCG L  ARR+ + +  K +++W SM
Sbjct: 265 VRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSARRIFDLIIEKSMLSWTSM 324

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP---------------- 246
           +AGY   G   EALD+ R M    I+P+  T+A+++ +  +                   
Sbjct: 325 IAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACADLGSLSIGQEIEEYIFLNGL 384

Query: 247 -----------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
                             +++  +E+F ++ +K+L  W  MI  YA + M  EA+ L+ +
Sbjct: 385 ESDQQVQTSLIHMYSKCGSIVKAREVFERVTDKDLTVWTSMINSYAIHGMGNEAISLFHK 444

Query: 290 MEV-HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKC 347
           M    GI P+AI   SV  AC     +  G K  + +++   + P +     L+D+  + 
Sbjct: 445 MTTAEGIMPDAIVYTSVFLACSHSGLVEEGLKYFKSMQKDFGITPTVEHCTCLIDLLGRV 504

Query: 348 GSLTEARTVFDQM 360
           G L  A      M
Sbjct: 505 GQLDLALNAIQGM 517


>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Glycine max]
          Length = 518

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 183/507 (36%), Positives = 285/507 (56%), Gaps = 16/507 (3%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKL-----MRTYGACGQMVDTRH---VFDEITNKN 94
           ++ TLK++HA +I+N  L SN     KL     M   G        R+   +F +I   +
Sbjct: 13  NVGTLKQIHALMIVNG-LTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQPD 71

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
              +N  IR    ++    A+ +Y  M      PD +T+P VLKAC+    +  G  +H 
Sbjct: 72  TFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVHG 131

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            V+++G   N+   N L+  + KCG LK A  + +D    DVV W++++AGYAQ G    
Sbjct: 132 RVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAGYAQRGDLSV 191

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
           A  +  EM      P  D ++  +     T    + S + +F +   K++VSWN +I  Y
Sbjct: 192 ARKLFDEM------PKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGY 245

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH-RYVERKKLQPN 333
              ++  EA++L+ +M   G  P+ +++ S+L AC DL  L  G K+H + +E  K + +
Sbjct: 246 VLRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLS 305

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             L NALVDMYAKCG++ +A  VF  +R +DVVSW S+IS     G   +++ LF +M M
Sbjct: 306 TLLGNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKM 365

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           + +CPD + FV VL+ACSHAG ++EG  YF +M  +YK+ P I H  C+VD+LGRAG ++
Sbjct: 366 TKVCPDEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLK 425

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA++ I  M +EPN  +W SL+ AC ++ ++++   A + +  +  +QSG YVLLSN+YA
Sbjct: 426 EAFNFIASMKIEPNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGDQSGDYVLLSNVYA 485

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGAS 540
             G W   + VRK M+  G+ K  G+S
Sbjct: 486 SQGEWDGAENVRKLMDDNGVTKNRGSS 512


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 182/530 (34%), Positives = 297/530 (56%), Gaps = 67/530 (12%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VF  I   N++ +N + R +  +     AL +Y  M   G  P+ YT+P VLK+C+ S +
Sbjct: 90  VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKA 149

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN---------------- 189
              G QIH  V+K+G D +L+    L++MY + G L++A +V +                
Sbjct: 150 FKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKG 209

Query: 190 ---------------DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
                          ++P KDVV+WN+M++GYA+ G + EAL++ ++M    ++PD  TM
Sbjct: 210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 269

Query: 235 ASLLPSV----------------------TNTSPENVL-----------SVKEMFLKLDN 261
            +++ +                       +N    N L           +   +F +L  
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY 329

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           K+++SWN +I  Y + ++  EA+ L+ +M   G  PN +++ S+LPAC  L A+ +GR I
Sbjct: 330 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 389

Query: 322 HRYVER--KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
           H Y+++  K +     L  +L+DMYAKCG +  A  VF+ +  + + SW +MI  + M G
Sbjct: 390 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHG 449

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
           +   +  LFS+M   G+ PD I FV +LSACSH+G+L+ GR+ F+ MT+ YK+ P++EH+
Sbjct: 450 RADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHY 509

Query: 440 ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
            C++DLLG +G  +EA ++I  M MEP+  IW SL+ AC ++ N+++G   A+++  + P
Sbjct: 510 GCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEP 569

Query: 500 NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
              G YVLLSNIYA AGRW +V + R  +N KG+KK+PG +S+E++  V 
Sbjct: 570 ENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVH 619



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 167/347 (48%), Gaps = 37/347 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L++ Y + G + + + +FDEI  K+VV +N +I  Y     Y +AL ++K+M      PD
Sbjct: 206 LIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPD 265

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   V+ AC+ S S+ +G Q+H  +   G   NL   N L+ +Y KCG L+ A  +  
Sbjct: 266 ESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFE 325

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
            +P KDV++WN+++ GY     + EAL + +EM      P+  TM S+LP+         
Sbjct: 326 RLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDI 385

Query: 241 --------------VTNTSP------------ENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
                         VTN S              ++ +  ++F  + +K+L SWN MI  +
Sbjct: 386 GRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGF 445

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPN 333
           A +     + DL+ +M   GI+P+ I+   +L AC     L LGR I R + +  K+ P 
Sbjct: 446 AMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPK 505

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSG 379
           L     ++D+    G   EA  + + M  + D V W S++ A  M G
Sbjct: 506 LEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHG 552



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 101/195 (51%), Gaps = 3/195 (1%)

Query: 53  QIIINQH-LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLY 111
            + I+ H   SN  I   L+  Y  CG++     +F+ +  K+V+ +N LI  Y +  LY
Sbjct: 289 HLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLY 348

Query: 112 YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK--VGLDYNLFNGN 169
            +AL +++ M   G  P+  T   +L AC+   ++ +G  IH  + K   G+        
Sbjct: 349 KEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRT 408

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            L+ MY KCG ++ A +V N +  K + +WN+M+ G+A +GR D + D+   M  + I+P
Sbjct: 409 SLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQP 468

Query: 230 DADTMASLLPSVTNT 244
           D  T   LL + +++
Sbjct: 469 DDITFVGLLSACSHS 483



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 59/116 (50%), Gaps = 5/116 (4%)

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           L  A +VF  ++  +++ W +M   + +S     A+ L+  M+  GL P+S  F  VL +
Sbjct: 84  LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143

Query: 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMP 463
           C+ +   +EG+   +I     KL   ++ +    L+ +  + G++E+A+ +  + P
Sbjct: 144 CAKSKAFKEGQ---QIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSP 196


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/532 (32%), Positives = 306/532 (57%), Gaps = 35/532 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LH  +++   L   P +G  L+  Y    Q+ D R +FD +   ++V +N +I  YV 
Sbjct: 131 RQLHG-LVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQ 189

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    DA  ++  M   G  PD  T+   L + + S+SL    +IH  +V+ G+  +++ 
Sbjct: 190 NGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYL 249

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            + L+ +Y KC     A ++ N     D+V + +M++GY  NG   +AL++ R +   ++
Sbjct: 250 NSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKM 309

Query: 228 KPDADTMASLLPSVTNTSP------------ENVLSVK---------------------E 254
            P+A T +S+LP+    +             +N L  K                      
Sbjct: 310 IPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHL 369

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F ++  K+ + WN +I  ++ +  P EA+ L+ QM + G++ + ++V++ L AC ++ A
Sbjct: 370 IFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPA 429

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           L  G++IH ++ +   + +L   +AL++MYAKCG L  AR VF+ M+ ++ V+W S+I+A
Sbjct: 430 LHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAA 489

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
           YG  G   D++ALF  ML  G+ PD I F+++LS+C HAG +E+G  YF+ MTE+Y +  
Sbjct: 490 YGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPA 549

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
           ++EH+AC+ DL GRAG ++EA+++I  MP  P   +WG+L+ AC ++ N+++  +A+ ++
Sbjct: 550 QMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELAEVASRYL 609

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMND 545
             L P  SGYY+LL+++ A AG+W  V +++  M  +G++K+PG S +E+N+
Sbjct: 610 LDLEPKNSGYYLLLTHVLADAGKWRSVHKIQHLMKERGVQKVPGCSWIEVNN 661



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 145/490 (29%), Positives = 242/490 (49%), Gaps = 48/490 (9%)

Query: 33  ACNDILDKY---PDIKT--------LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMV 81
            C    DKY   P IK         L K+   +I+      +  +   L++ Y   G + 
Sbjct: 3   GCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIE 62

Query: 82  DTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACS 141
           D R  FD++ +K+ V +NV+I  YV       A+ ++K+M      PD  T+ CVL    
Sbjct: 63  DARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISC 122

Query: 142 GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNS 201
               +  G Q+H  VV+ GLD+    GN LV +Y K   L +AR++ + MP  D+V WN 
Sbjct: 123 SEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNR 182

Query: 202 MVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP--------------- 246
           M+ GY QNG  D+A  +  EM S  IKPD+ T  S LPS+  +S                
Sbjct: 183 MIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHG 242

Query: 247 -------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
                              + V++ K MF      ++V +  MI+ Y  N M  +A++++
Sbjct: 243 VILDVYLNSALIDLYFKCRDAVMACK-MFNLSTKFDIVIYTAMISGYVLNGMNKDALEIF 301

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
             +    + PNA++ +S+LPAC  L+A+ LGR++H Y+ + +L+    + +A+++MYAKC
Sbjct: 302 RWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKC 361

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           G L  A  +F ++  +D + W S+I+++   G+  +A+ LF +M M G+  D +   + L
Sbjct: 362 GRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAAL 421

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
           SAC++   L  G+     M +       +   + L+++  + GK+  A  L+  +  E N
Sbjct: 422 SACANIPALHYGKEIHGFMIKG-AFESDLFDMSALINMYAKCGKLNIA-RLVFNLMQEKN 479

Query: 468 ERIWGSLVAA 477
           E  W S++AA
Sbjct: 480 EVAWNSIIAA 489


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 176/507 (34%), Positives = 281/507 (55%), Gaps = 39/507 (7%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIG-LKLMRTYGACGQMVDTRH-VFDEITNKNVVFFNVL 101
           I  L + HA I+ +  +HS  +   L    +  +  Q +   H +F  I N N   +N +
Sbjct: 20  ISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTI 79

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           IR+Y N+     AL ++  M      PD YT+   LK+C   + +  G QIH  V+K GL
Sbjct: 80  IRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGL 139

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             +LF  N L+ +Y  CGC+++AR +L+ M  +DVV+WN++++ YA+ G  +        
Sbjct: 140 GDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLME-------- 191

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
                                       L+ + +F +   KN+VSWN MI  Y++    +
Sbjct: 192 ----------------------------LASRRVFGETPVKNVVSWNAMITGYSHAGRFS 223

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
           E + L+  M+  G++P+  ++ SVL AC  + AL  G  +H Y+++  +  +  +  ALV
Sbjct: 224 EVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALV 283

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           DMY+KCGS+ +A  VF+    +D+ +W S+IS     G G  A+ +FS+ML+ G  P+ +
Sbjct: 284 DMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEV 343

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
            FV VLSACS AGLL+EGR  F +M   + + P IEH+ C+VDLLGR G +EEA +L+++
Sbjct: 344 TFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQK 403

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
           MP +    +W SL+ AC  + N+++    A  +  L+P +S  +V LSN+YA  GRW DV
Sbjct: 404 MPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDV 463

Query: 522 KRVRKFMNSKGIKKMPGAS-VEMNDQV 547
             VR+ M ++G++K PG S +E++  V
Sbjct: 464 MEVRQKMRAQGVRKDPGCSMIEVDGTV 490


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 170/484 (35%), Positives = 263/484 (54%), Gaps = 38/484 (7%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+ +Y + G + D+R  FDE+ ++NVV +N +I  Y       +   ++  M   G
Sbjct: 149 VGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQG 208

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           F  D +T   +L ACS   +L +G  +HC ++  G   +L   + LV MYGKCG L  AR
Sbjct: 209 FLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMAR 268

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           R    MP K VV+W SM+    ++G  + A                              
Sbjct: 269 RCFEMMPIKSVVSWTSMLCAQTKHGSVNAA------------------------------ 298

Query: 246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                  +  F  +  +N+VSWN MI+ Y       EA+DLY QM+  G+ P+ I++ +V
Sbjct: 299 -------RCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAV 351

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L A G +  L +G+ +H Y+      P++ L N+L+DMYAKCG +  A ++F +M  ++V
Sbjct: 352 LSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNV 411

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           VSW  +I    M G+  D +  F  M+     PD I FV++LSACSH GLLE G++YF+ 
Sbjct: 412 VSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFES 471

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M   Y +   +EH+AC+VDLLGR G +E+A  LIK+MPM+P+  +WG+L+ AC ++ N+ 
Sbjct: 472 MRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVK 531

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK-MPGASVEMN 544
           IG      +  L     G +VL+SN+  +  +W D+KR+RK M   G +K M  +S+E+N
Sbjct: 532 IGRQVIKQLLELEGISGGLFVLISNLLYETHQWEDMKRLRKLMKEWGTRKDMGVSSIEIN 591

Query: 545 DQVQ 548
           + + 
Sbjct: 592 NSIH 595



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 116/242 (47%), Gaps = 2/242 (0%)

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           + +F  +   + V +N +I  Y N+S P EA+ L+  M   GI PN  ++  V+ AC   
Sbjct: 66  RRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIA 125

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
            A      +H    R  L   + + NAL+  YA  GSL ++R  FD+M  ++VVSW SMI
Sbjct: 126 QAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMI 185

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
             Y  +G   +  +LF +M   G   D    VS+L ACS  G LE GR     M      
Sbjct: 186 GGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSR 245

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAAD 492
           V  I   A LVD+ G+ G +  A    + MP++     W S++ A   + +++      D
Sbjct: 246 VDLILESA-LVDMYGKCGDLWMARRCFEMMPIKSVVS-WTSMLCAQTKHGSVNAARCWFD 303

Query: 493 HI 494
           H+
Sbjct: 304 HM 305


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 170/460 (36%), Positives = 268/460 (58%), Gaps = 38/460 (8%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VFDE   +++V +N LI  YV      +A+ +Y+ M      PD  T   V+ AC+   S
Sbjct: 211 VFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLES 270

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           L +G +IH  + + GL+  +   N L+ MY KCG L+  + + ++M  K VV+W +M+ G
Sbjct: 271 LKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVG 330

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           YA+NG  D A                                      ++F  +  KN+V
Sbjct: 331 YAKNGLLDMA-------------------------------------GKLFHDMPEKNVV 353

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           +WN MI      ++  EA++L+ +M+   ++P+ +++   L AC  L AL  G   H Y+
Sbjct: 354 AWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYI 413

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
           ++  L  ++ L  AL+DMYAKCG++T+A  VF++M  ++ ++WT++I    + G   DA+
Sbjct: 414 KKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAI 473

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
             FSKM+ SGL PD I F+ VL+AC H GL+EEGR YF  M  ++ L P+ +H++C+V+L
Sbjct: 474 FYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNL 533

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           LGRAG +EEA +LIK MPME +  +WG+L  AC ++ N+ IG  AA  +  L P+ SG Y
Sbjct: 534 LGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDLDPHDSGIY 593

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMN 544
           VLL+N+Y +AG+W + + +RK M  +G++K PG +S+E+N
Sbjct: 594 VLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVN 633


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 173/460 (37%), Positives = 269/460 (58%), Gaps = 38/460 (8%)

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            +P+   Y  +L  C+    L  G  IH  +     + +L   N ++ MY KCG L+EA+
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            + + MP+KD+V+W  +++GY+Q+G+  EAL +  +M  L  +P+  T++SLL + + T 
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA-SGTG 219

Query: 246 PEN----------------------------------VLSVKEMFLKLDNKNLVSWNVMI 271
           P +                                  +   K +F  L  KN+VSWN +I
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALI 279

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           A +A        + L+ QM   G EP   + +SVL AC    +L  G+ +H +V +   Q
Sbjct: 280 AGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQ 338

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
           P   + N L+DMYAK GS+ +A+ VF ++  QD+VSW S+IS Y   G G +A+ LF +M
Sbjct: 339 PIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQM 398

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
           L + + P+ I F+SVL+ACSH+GLL+EG+YYF++M +++K+  ++ H   +VDLLGRAG+
Sbjct: 399 LKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGR 457

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
           + EA   I++MP++P   +WG+L+ AC ++ NMD+G+ AA+ IF L P+ SG +VLLSNI
Sbjct: 458 LNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNI 517

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           YA AGR  D  +VRK M   G+KK P  S VE+ ++V + 
Sbjct: 518 YASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVF 557



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 168/338 (49%), Gaps = 33/338 (9%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y  CG + + + +FD++  K++V + VLI  Y  +    +AL ++  M   GF P+
Sbjct: 146 ILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPN 205

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +T   +LKA     S   G Q+H   +K G D N+  G+ L+ MY +   ++EA+ + N
Sbjct: 206 EFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFN 265

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE-- 247
            + +K+VV+WN+++AG+A+ G  +  + +  +M     +P   T +S+L   ++ S E  
Sbjct: 266 SLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLACASSGSLEQG 325

Query: 248 ------------------------------NVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
                                         ++   K++F +L  +++VSWN +I+ YA +
Sbjct: 326 KWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQH 385

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
            + AEA+ L+ QM    ++PN I+  SVL AC     L  G+     +++ K++  +   
Sbjct: 386 GLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHH 445

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTSMISA 374
             +VD+  + G L EA    ++M  +   + W +++ A
Sbjct: 446 VTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGA 483



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 150/305 (49%), Gaps = 15/305 (4%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           N  +G  L+  Y     M + + +F+ +  KNVV +N LI  +         + ++  M 
Sbjct: 240 NVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQML 299

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
             GF+P  +TY  VL AC+ S SL  G  +H  V+K G     + GN L+ MY K G +K
Sbjct: 300 RQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIK 358

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
           +A++V   +  +D+V+WNS+++GYAQ+G   EAL +  +M   +++P+  T  S+L   T
Sbjct: 359 DAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVL---T 415

Query: 243 NTSPENVLSVKEMFLKLDNKNLVSWNV-----MIAVYANNSMPAEAVDLYLQMEVHGIEP 297
             S   +L   + + +L  K+ +   V     ++ +        EA     +M    I+P
Sbjct: 416 ACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMP---IKP 472

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV-DMYAKCGSLTEARTV 356
            A    ++L AC     + LG  ++   +  +L P+    + L+ ++YA  G L++A  V
Sbjct: 473 TAAVWGALLGACRMHKNMDLG--VYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKV 530

Query: 357 FDQMR 361
              M+
Sbjct: 531 RKMMK 535


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 176/537 (32%), Positives = 295/537 (54%), Gaps = 36/537 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++HA  ++ +    + S+   L+  Y  C ++   R +FD++  KN++ +  +I  Y+ 
Sbjct: 158 KQIHA-YVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQ 216

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N   ++A+ ++  M+  G+ PD +    VL +C    +L  G Q+H   +K  L+ N F 
Sbjct: 217 NSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFV 276

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            NGL+ MY K   L +A++V + M  ++V+++N+M+ GY+   +  EAL++  EM     
Sbjct: 277 KNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLF 336

Query: 228 KPDADTMASLLPSVTN---------------------------------TSPENVLSVKE 254
            P   T  SLL    +                                 +    V   + 
Sbjct: 337 PPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARH 396

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F +++ K++V WN M   Y  +    EA+ LY  ++    +PN  + A+++ A  +L++
Sbjct: 397 VFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLAS 456

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           L  G++ H  + +  L     + NALVDMYAKCGS+ EAR +F+    +DVV W SMIS 
Sbjct: 457 LRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMIST 516

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
           +   G+  +A+ +F +M+  G+ P+ + FV+VLSACSHAG +E+G  +F  M   + + P
Sbjct: 517 HAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMP-GFGIKP 575

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
             EH+AC+V LLGR+GK+ EA + I++MP+EP   +W SL++AC +  N+++G  AA+  
Sbjct: 576 GTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMA 635

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
               P  SG Y+LLSNI+A  G W DVK+VR  M+S  + K PG S +E+N++V + 
Sbjct: 636 ISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVF 692



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 216/461 (46%), Gaps = 44/461 (9%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +LH   ++      +  +G  L+  Y   G +   R VFD++  K  V +  +I  Y   
Sbjct: 58  QLHG-FVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKC 116

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
                +L ++  M      PD Y    VL ACS    L  G QIH  V++ G + ++   
Sbjct: 117 GRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVV 176

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           N L+  Y KC  +K  R++ + M  K++++W +M++GY QN    EA+ +  EM  L  K
Sbjct: 177 NVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWK 236

Query: 229 PDADTMASLLPSV----------------------TNTSPENVL-----------SVKEM 255
           PD     S+L S                       +N   +N L             K++
Sbjct: 237 PDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKV 296

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F  +  +N++S+N MI  Y++    +EA++L+ +M V    P+ ++  S+L     L AL
Sbjct: 297 FDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFAL 356

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
            L ++IH  + +  +  +L   +AL+D+Y+KC  + +AR VF++M  +D+V W +M   Y
Sbjct: 357 ELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGY 416

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-RYYFKIMTEQYKLVP 434
               +  +A+ L+S +  S   P+   F ++++A S+   L  G +++ +++       P
Sbjct: 417 TQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCP 476

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
            + +   LVD+  + G +EEA  +        N  IW  +V
Sbjct: 477 FVTN--ALVDMYAKCGSIEEARKMF-------NSSIWRDVV 508



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 199/398 (50%), Gaps = 40/398 (10%)

Query: 113 DALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGL 171
           +AL V+ ++    G  P+ +    V++AC+    +  G Q+H  VV+ G D +++ G  L
Sbjct: 19  EALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSL 78

Query: 172 VAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA 231
           +  Y K G ++ AR V + +  K  VTW +++AGY + GR   +L++  +M    + PD 
Sbjct: 79  IDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDR 138

Query: 232 DTMASLLP---------------------------SVTN------TSPENVLSVKEMFLK 258
             ++S+L                            SV N      T    V + +++F +
Sbjct: 139 YVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQ 198

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +  KN++SW  MI+ Y  NS   EA+ L+ +M   G +P+  +  SVL +CG L AL  G
Sbjct: 199 MVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQG 258

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           R++H Y  +  L+ N  ++N L+DMYAK   L +A+ VFD M  Q+V+S+ +MI  Y   
Sbjct: 259 RQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQ 318

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
            +  +A+ LF +M +    P  + FVS+L   +    LE  +    ++    K    ++ 
Sbjct: 319 EKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLII---KXGVSLDL 375

Query: 439 FA--CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
           FA   L+D+  +   V++A  + ++M  E +  +W ++
Sbjct: 376 FAGSALIDVYSKCSYVKDARHVFEEMN-EKDIVVWNAM 412



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 182/386 (47%), Gaps = 38/386 (9%)

Query: 31  GDACNDILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVF 87
           G AC  +L     ++ L   +++HA   I  +L SN  +   L+  Y     + D + VF
Sbjct: 239 GFACTSVLTSCGSLEALEQGRQVHA-YTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVF 297

Query: 88  DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLL 147
           D +  +NV+ +N +I  Y +     +AL ++  M V  F P   T+  +L   +   +L 
Sbjct: 298 DVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALE 357

Query: 148 VGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA 207
           +  QIH  ++K G+  +LF G+ L+ +Y KC  +K+AR V  +M  KD+V WN+M  GY 
Sbjct: 358 LSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYT 417

Query: 208 QNGRFDEALDVCREMESLRIKPDADTMASLL---------------------------PS 240
           Q+   +EAL +   ++  R KP+  T A+L+                           P 
Sbjct: 418 QHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPF 477

Query: 241 VTNTSPE------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
           VTN   +      ++   ++MF     +++V WN MI+ +A +    EA+ ++ +M   G
Sbjct: 478 VTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEG 537

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
           I+PN ++  +VL AC     +  G      +    ++P       +V +  + G L EA+
Sbjct: 538 IQPNYVTFVAVLSACSHAGXVEDGLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLFEAK 597

Query: 355 TVFDQMRCQ-DVVSWTSMISAYGMSG 379
              ++M  +   + W S++SA  ++G
Sbjct: 598 EFIEKMPIEPAAIVWRSLLSACRIAG 623


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 176/479 (36%), Positives = 272/479 (56%), Gaps = 35/479 (7%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNM--SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
           +NVL+R++++     DALH++  M  +      D +T  C LK+CS   +L VG  +   
Sbjct: 86  YNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAY 145

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
            VK GL  + F  + L+ MY  CG +  AR V +      VV WN++VA Y +NG + E 
Sbjct: 146 AVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEV 205

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNT--------------------SPENVLSVKEM 255
           +++ + M  + +  D  T+ S++ +                        +P+ V ++ +M
Sbjct: 206 VEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDM 265

Query: 256 FLK-------------LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
           + K             + ++++V+W+ MI+ Y       EA+ L+ +M++  +EPN +++
Sbjct: 266 YAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTM 325

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            SVL AC  L AL  G+ +H YV RK+L     L  ALVD YAKCG + +A   F+ M  
Sbjct: 326 VSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPV 385

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           ++  +WT++I     +G+G +A+ LFS M  +G+ P  + F+ VL ACSH+ L+EEGR +
Sbjct: 386 KNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRH 445

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           F  M   Y + PR+EH+ C+VDLLGRAG V+EAY  I+ MP+EPN  IW +L+++C ++ 
Sbjct: 446 FDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHR 505

Query: 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           N+ IG  A   I  L P+ SG YVLLSNIYA AG+W D   VRK M  +GI+K PG S+
Sbjct: 506 NVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSL 564



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 151/340 (44%), Gaps = 35/340 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y +CG +   R VFD      VV +N ++ +Y+ N  + + + ++K M   G   D
Sbjct: 161 LIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFD 220

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   V+ AC       +G  +   V + GL  N      L+ MY KCG + +ARR+ +
Sbjct: 221 EVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFD 280

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT------- 242
            M S+DVV W++M++GY Q  +  EAL +  EM+  R++P+  TM S+L +         
Sbjct: 281 GMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALET 340

Query: 243 -----------NTSPENVLSVK---------------EMFLKLDNKNLVSWNVMIAVYAN 276
                        S   +L                  E F  +  KN  +W  +I   A 
Sbjct: 341 GKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMAT 400

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLR 335
           N    EA++L+  M   GIEP  ++   VL AC     +  GR+    + R   ++P + 
Sbjct: 401 NGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVE 460

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
               +VD+  + G + EA      M  + + V W +++S+
Sbjct: 461 HYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSS 500



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 146/333 (43%), Gaps = 14/333 (4%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC  I D       L K  A  +  + L  NP +   LM  Y  CG++   R +FD + +
Sbjct: 230 ACGRIGDA-----KLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQS 284

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           ++VV ++ +I  Y       +AL ++  M +   +P+  T   VL AC+   +L  G  +
Sbjct: 285 RDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWV 344

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  V +  L      G  LV  Y KCGC+ +A      MP K+  TW +++ G A NGR 
Sbjct: 345 HSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRG 404

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTS--PENVLSVKEMFLKLDNKNLVS-WNV 269
            EAL++   M    I+P   T   +L + +++    E       M      K  V  +  
Sbjct: 405 REALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGC 464

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           M+ +     +  EA      M    IEPNA+   ++L +C     + +G +  + +    
Sbjct: 465 MVDLLGRAGLVDEAYQFIRTMP---IEPNAVIWRALLSSCAVHRNVGIGEEALKQI--IS 519

Query: 330 LQPNLRLENALV-DMYAKCGSLTEARTVFDQMR 361
           L P+   +  L+ ++YA  G   +A  V  +M+
Sbjct: 520 LNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMK 552


>gi|224096616|ref|XP_002310672.1| predicted protein [Populus trichocarpa]
 gi|222853575|gb|EEE91122.1| predicted protein [Populus trichocarpa]
          Length = 551

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 178/525 (33%), Positives = 289/525 (55%), Gaps = 35/525 (6%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           +H QI+ N    SN  +  KL+  Y   G  V  R VFD +  + VV ++  I  Y  N 
Sbjct: 19  IHNQILTNG-FASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTVVSWSAQISGYSQNG 77

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
            Y DAL V+ +M   GF  + +TY  VL+AC+G   L  G+QI   + K     NL   +
Sbjct: 78  CYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGCLEKSRFASNLIVQS 137

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            L+ ++ KCG +++A  +   M  +DVV+WN+++  YA  G   ++  + R M    + P
Sbjct: 138 ALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGDSFRMFRSMMQEGMSP 197

Query: 230 DADTMASLLPSVTNTSP---------------------------------ENVLSVKEMF 256
           D  T  S+L +    S                                  E++ S   ++
Sbjct: 198 DLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGSLIDAYAKCESLASAHCLY 257

Query: 257 LKLDNKNLVSWNVMIAVYANNS-MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
             +  K+++S   ++  YA +S   ++A+DL+ +++   ++ + + + S+   C ++S+L
Sbjct: 258 KSMPMKDMISCTALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVILCSMFNICANISSL 317

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
            +GR+IH    + K   ++ + NAL+DMYAK G + +A   F++M  ++V+SWTS+I+ Y
Sbjct: 318 SVGRQIHALALKCKPTYDVAMGNALIDMYAKSGEIKDANRAFNEMEEKNVISWTSLITGY 377

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
           G  G G++A+ALF KM   GL P+ I F+S+L AC+H GL  EG   F  M  +Y ++PR
Sbjct: 378 GSHGHGHEAIALFKKMEYEGLKPNDITFLSLLFACNHCGLTGEGWECFNNMISKYNILPR 437

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
            EHF+C+VDL  R G +EEAY+LI +M ++PN  +WG+++ AC +Y NM +   AA H+F
Sbjct: 438 AEHFSCMVDLFARGGLLEEAYNLINKMNIKPNASLWGAILGACYIYGNMPLAEEAAIHLF 497

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            + P  S  YV+L++IYA AG W +  ++RK M  + +KK PG S
Sbjct: 498 KMDPENSVNYVVLADIYAAAGSWDNAWKMRKLMEERNLKKAPGYS 542



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 170/377 (45%), Gaps = 40/377 (10%)

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDV 196
           L+ C  + +   G  IH  ++  G   N+     L+  Y K G    AR+V + MP + V
Sbjct: 4   LQLCIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTV 63

Query: 197 VTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT-------------- 242
           V+W++ ++GY+QNG + +AL V  +M     K +  T  S+L + T              
Sbjct: 64  VSWSAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGC 123

Query: 243 --------NTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
                   N   ++ L               +F  ++ +++VSWN +I  YA      ++
Sbjct: 124 LEKSRFASNLIVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGDS 183

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
             ++  M   G+ P+  +  SVL A G  S ++   +IH+ + +     ++ L  +L+D 
Sbjct: 184 FRMFRSMMQEGMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGSLIDA 243

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM-SGQGYDAVALFSKMLMSGLCPDSIA 402
           YAKC SL  A  ++  M  +D++S T++++ Y   S     A+ LF ++    +  D + 
Sbjct: 244 YAKCESLASAHCLYKSMPMKDMISCTALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVI 303

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR--IEHFACLVDLLGRAGKVEEAYDLIK 460
             S+ + C++   L  GR   +I     K  P   +     L+D+  ++G++++A     
Sbjct: 304 LCSMFNICANISSLSVGR---QIHALALKCKPTYDVAMGNALIDMYAKSGEIKDANRAFN 360

Query: 461 QMPMEPNERIWGSLVAA 477
           +M  E N   W SL+  
Sbjct: 361 EME-EKNVISWTSLITG 376


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 182/518 (35%), Positives = 290/518 (55%), Gaps = 37/518 (7%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
           L SN  +   L+  Y  CG + D + VFD++  ++VV +N +I  +  +   YD +    
Sbjct: 150 LESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLL 209

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
               +   P+  T   VL A +  NSL  G +IH   V+ G   ++  G G++ +YGKC 
Sbjct: 210 VQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQ 269

Query: 180 CLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR---IKPDADTMA 235
           C+  ARR+ + M   K+ VTW++MV  Y       EAL++  ++  L+   I   A T+A
Sbjct: 270 CIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLA 329

Query: 236 SLL---PSVTNTSPENVL---SVKEMFL---------------------------KLDNK 262
           +++    ++T+ S    L   ++K  F+                           ++D +
Sbjct: 330 TVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLR 389

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH 322
           + VS+  +I+ Y  N    E + ++L+M++ GI P   ++ASVLPAC  L+ L  G   H
Sbjct: 390 DAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSH 449

Query: 323 RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY 382
            Y        +  + NAL+DMYAKCG +  AR VFD+M  + +VSW +MI AYG+ G G 
Sbjct: 450 CYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGL 509

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL 442
           +A+ LF  M   GL PD + F+ ++SACSH+GL+ EG+Y+F  MT+ + ++PR+EH+AC+
Sbjct: 510 EALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACM 569

Query: 443 VDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS 502
           VDLL RAG  +E +  I++MP+EP+ R+WG+L++AC +Y N+++G   +  I  L P  +
Sbjct: 570 VDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPEST 629

Query: 503 GYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           G +VLLSN+Y+  GRW D  +VR     +G +K PG S
Sbjct: 630 GNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCS 667



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 146/493 (29%), Positives = 248/493 (50%), Gaps = 67/493 (13%)

Query: 27  TLLSGDACNDILDKYPDIKTLKKLHAQIIINQHL----HSNPSIGL--------KLMRTY 74
           T LS + C  +L+     K+L +     +I+QHL    H      L        KL+  Y
Sbjct: 5   TRLSLEYCTVLLESCIQSKSLFR---GKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLY 61

Query: 75  GACGQMVDTRHVFDEITN--KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYT 132
            AC ++   RHVFD++ +  KNVV +N+LIR+Y  N  Y +A+ +Y  M  +G  P+ +T
Sbjct: 62  IACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFT 121

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           +P VLKACS       G +IHC + ++ L+ N++    LV  Y KCGCL +A+ V + M 
Sbjct: 122 FPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMH 181

Query: 193 SKDVVTWNSMVAGYA-QNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP----- 246
            +DVV WNSM++G++   G +DE   +  +M++  + P++ T+  +LP+V   +      
Sbjct: 182 KRDVVAWNSMISGFSLHEGSYDEVARLLVQMQN-DVSPNSSTIVGVLPAVAQVNSLRHGK 240

Query: 247 ------------------ENVLSVKEMFLKLDN-----------KNLVSWNVMIAVYANN 277
                               +L V      +D            KN V+W+ M+  Y   
Sbjct: 241 EIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVC 300

Query: 278 SMPAEAVDLYLQ---MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
               EA++L+ Q   ++   I  +A+++A+V+  C +L+ L  G  +H Y  +     +L
Sbjct: 301 DFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDL 360

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + N L+ MYAKCG +  A   F++M  +D VS+T++IS Y  +G   + + +F +M +S
Sbjct: 361 MVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLS 420

Query: 395 GLCPDSIAFVSVLSACSH-AGLLEEGRYYFKIMTEQYKLVPRI--EHFAC--LVDLLGRA 449
           G+ P+     SVL AC+H AGL      ++   +  Y ++     +   C  L+D+  + 
Sbjct: 421 GINPEKATLASVLPACAHLAGL------HYGSCSHCYAIICGFTADTMICNALIDMYAKC 474

Query: 450 GKVEEAYDLIKQM 462
           GK++ A  +  +M
Sbjct: 475 GKIDTARKVFDRM 487



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 115/216 (53%), Gaps = 1/216 (0%)

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           KN+V WN++I  YA N    EA+DLY +M  +GI PN  +   VL AC  L     GR+I
Sbjct: 82  KNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREI 141

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
           H  ++R +L+ N+ +  ALVD YAKCG L +A+ VFD+M  +DVV+W SMIS + +    
Sbjct: 142 HCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGS 201

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
           YD VA     + + + P+S   V VL A +    L  G+        +   V  +     
Sbjct: 202 YDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRR-GFVGDVVVGTG 260

Query: 442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           ++D+ G+   ++ A  +   M +  NE  W ++V A
Sbjct: 261 ILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 11/188 (5%)

Query: 305 VLPACGDLSALLLGRKIHRYVER---KKLQPNLRLENA----LVDMYAKCGSLTEARTVF 357
           +L +C    +L  G+ IH+++ +   +  + NL   +     LVD+Y  C  L  AR VF
Sbjct: 15  LLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVF 74

Query: 358 DQM--RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           D+M  R ++VV W  +I AY  +G   +A+ L+ KML  G+ P+   F  VL ACS    
Sbjct: 75  DKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKE 134

Query: 416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
             EGR       ++ +L   +     LVD   + G +++A ++  +M  + +   W S++
Sbjct: 135 ASEGR-EIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMH-KRDVVAWNSMI 192

Query: 476 AACCLYSN 483
           +   L+  
Sbjct: 193 SGFSLHEG 200


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 181/524 (34%), Positives = 287/524 (54%), Gaps = 37/524 (7%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           N  +   L+  Y   G     R +FD++  +++  +N +I   + N     AL V   M 
Sbjct: 249 NVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR 308

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
           + G   +  T   +L  C     +   + IH  V+K GL+++LF  N L+ MY K G L+
Sbjct: 309 LEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLE 368

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
           +AR+    M   DVV+WNS++A Y QN     A     +M+    +PD  T+ SL   V 
Sbjct: 369 DARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVA 428

Query: 243 NTSP------------------ENVL---SVKEMFLKLD-------------NKNLVSWN 268
            +                    E+V+   +V +M+ KL               K+++SWN
Sbjct: 429 QSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWN 488

Query: 269 VMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
            +I  YA N + +EA+++Y  M E   I PN  +  S+LPA   + AL  G +IH  V +
Sbjct: 489 TLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIK 548

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
             L  ++ +   L+D+Y KCG L +A ++F Q+  +  V+W ++IS +G+ G     + L
Sbjct: 549 TNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKL 608

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           F +ML  G+ PD + FVS+LSACSH+G +EEG++ F++M E Y + P ++H+ C+VDLLG
Sbjct: 609 FGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLG 667

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507
           RAG +E AY  IK MP++P+  IWG+L+ AC ++ N+++G  A+D +F +     GYYVL
Sbjct: 668 RAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVL 727

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQII 550
           LSNIYA  G+W  V +VR     +G+KK PG +++E+N +V + 
Sbjct: 728 LSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVF 771



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/543 (27%), Positives = 271/543 (49%), Gaps = 55/543 (10%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N + D        K LHA +++   + S   I  +L+  Y   G +  +R  FD+I  K+
Sbjct: 123 NFLFDSSTKTPFAKCLHALLVVAGKVQS-IFISTRLVNLYANLGDVSLSRCTFDQIPQKD 181

Query: 95  VVFFNVLIRSYVNNYLYYDALH-VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           V  +N +I +YV+N  +++A+   Y+ + V    PD YT+P VLKAC    +L+ G +IH
Sbjct: 182 VYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRRIH 238

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
           C   K+G  +N+F    L+ MY + G    AR + +DMP +D+ +WN+M++G  QNG   
Sbjct: 239 CWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAA 298

Query: 214 EALDVCREMESLRIKPDADTMASLLP-------------------------------SVT 242
           +ALDV  EM    IK +  T+ S+LP                               ++ 
Sbjct: 299 QALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALI 358

Query: 243 NTSPE--NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
           N   +  N+   ++ F ++   ++VSWN +IA Y  N  P  A   +++M+++G +P+ +
Sbjct: 359 NMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLL 418

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKK-LQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           ++ S+             R +H ++ R+  L  ++ + NA+VDMYAK G L  A  VF+ 
Sbjct: 419 TLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEI 478

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM-SGLCPDSIAFVSVLSACSHAGLLEE 418
           +  +DV+SW ++I+ Y  +G   +A+ ++  M     + P+   +VS+L A +H G L++
Sbjct: 479 ILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQ 538

Query: 419 G-RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           G R + +++     L   +    CL+D+ G+ G++ +A  L  Q+P E +   W ++++ 
Sbjct: 539 GMRIHGRVIKTNLHLDVFVA--TCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAIISC 595

Query: 478 CCLYSNMDIGILAADHIFH--LAPNQSGYYVLLS----NIYAKAGRWGDVKRVRKFMNSK 531
             ++ + +  +     +    + P+   +  LLS    + + + G+W       + M   
Sbjct: 596 HGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKW-----CFRLMQEY 650

Query: 532 GIK 534
           GIK
Sbjct: 651 GIK 653



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 112/221 (50%), Gaps = 1/221 (0%)

Query: 25  QYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR 84
           Q  LL+  +   I+ +  D K  + +H  I+    L  +  IG  ++  Y   G +    
Sbjct: 414 QPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAH 473

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGS 143
            VF+ I  K+V+ +N LI  Y  N L  +A+ VYK M       P+  T+  +L A +  
Sbjct: 474 KVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHV 533

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
            +L  G++IH  V+K  L  ++F    L+ +YGKCG L +A  +   +P +  VTWN+++
Sbjct: 534 GALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAII 593

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           + +  +G  ++ L +  EM    +KPD  T  SLL + +++
Sbjct: 594 SCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHS 634


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 179/532 (33%), Positives = 297/532 (55%), Gaps = 34/532 (6%)

Query: 54  IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
           ++I      +P +   L+  Y  CG + D R +F+ +   + V +N LI  YV N    +
Sbjct: 271 LVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDE 330

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           A  ++  M   G  PD  T+   L +   S SL    ++H  +V+  + ++++  + L+ 
Sbjct: 331 AAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALID 390

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           +Y K G ++ AR++       DV    +M++GY  +G   +A++  R +    + P++ T
Sbjct: 391 IYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLT 450

Query: 234 MAS----------------LLPSVTNTSPENVLSVK-----------------EMFLKLD 260
           MAS                L   +     EN+++V                  E F ++ 
Sbjct: 451 MASVLPACAALAALKLGKELHCDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMS 510

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
             + + WN MI+ ++ N  P  AVDL+ QM + G + +++S++S L +  +L AL  G++
Sbjct: 511 ETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKE 570

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
           +H YV R     +  + +AL+DMY+KCG L  AR VF+ M  ++ VSW S+I+AYG  G 
Sbjct: 571 MHGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSWNSIIAAYGNHGC 630

Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA 440
             + + LF +ML +G+ PD + F+ ++SAC HAGL+ EG +YF  MT +Y +  R+EH+A
Sbjct: 631 ARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYA 690

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500
           C+VDL GRAG++ EA+D IK MP  P+  +WG+L+ AC L+ N+++  LA+ H+  L P 
Sbjct: 691 CMVDLYGRAGRLHEAFDAIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPK 750

Query: 501 QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIA 551
            SGYYVLLSN++A AG WG V +VR+ M  KG++K+PG S +++N    + +
Sbjct: 751 NSGYYVLLSNVHADAGEWGSVLKVRRLMKEKGVQKIPGYSWIDVNGGTHMFS 802



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 155/587 (26%), Positives = 262/587 (44%), Gaps = 91/587 (15%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
            H +  +G  L++ Y   G + D R VFDE+  ++ + +NV++  YV +  + +A+  + 
Sbjct: 176 FHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFC 235

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M       +  TY C+L  C+      +G Q+H  V+  G +++    N LVAMY KCG
Sbjct: 236 GMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCG 295

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
            L +AR++ N MP  D VTWN ++AGY QNG  DEA  +   M S  +KPD+ T AS LP
Sbjct: 296 NLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLP 355

Query: 240 SVTNTSP---------------------------------ENVLSVKEMFLKLDNKNLVS 266
           S+  +                                    +V   +++F +    ++  
Sbjct: 356 SILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAV 415

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
              MI+ Y  + +  +A++ +  +   G+ PN++++ASVLPAC  L+AL LG+++H  + 
Sbjct: 416 CTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDIL 475

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           +K+L+  + + +A+ DMYAKCG L  A   F +M   D + W SMIS++  +G+   AV 
Sbjct: 476 KKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVD 535

Query: 387 LFSKMLMSG-----------------------------------LCPDSIAFVSVLSACS 411
           LF +M MSG                                      D+    +++   S
Sbjct: 536 LFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAFSSDTFVASALIDMYS 595

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM---PMEPNE 468
             G L   R  F +M  + ++      +  ++   G  G   E  DL  +M    + P+ 
Sbjct: 596 KCGKLALARCVFNLMAGKNEV-----SWNSIIAAYGNHGCARECLDLFHEMLRAGVHPDH 650

Query: 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG------YYVLLSNIYAKAGRWG--- 519
             +  +++AC     +  GI    H FH    + G      +Y  + ++Y +AGR     
Sbjct: 651 VTFLVIISACGHAGLVGEGI----HYFHCMTREYGIGARMEHYACMVDLYGRAGRLHEAF 706

Query: 520 DVKRVRKFMNSKGIKKMPGASVEMNDQVQIIALPLRSSKCLTTGPKN 566
           D  +   F    G+      +  ++  V++  L  R    L   PKN
Sbjct: 707 DAIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASR--HLLELDPKN 751



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 131/498 (26%), Positives = 248/498 (49%), Gaps = 43/498 (8%)

Query: 14  TKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRT 73
           +KP     L+TQ   L   AC+D       ++  +++H QII+   +    ++  +++  
Sbjct: 35  SKPETQDYLTTQLESLF-RACSDA----SVVQQARQVHTQIIVGG-MSDVCALSSRVLGL 88

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y  CG++ D  ++F  +   N + +N +IR       +  AL  Y  M      PD YT+
Sbjct: 89  YVLCGRISDGGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTF 148

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
           P V+KAC G N++ + + +H +   +G   +LF G+ L+ +Y   G + +ARRV +++P 
Sbjct: 149 PYVIKACGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQ 208

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL--------------- 238
           +D + WN M+ GY ++G F+ A+     M +     ++ T   +L               
Sbjct: 209 RDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQV 268

Query: 239 ------------PSVTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                       P V NT         N+   +++F  +   + V+WN +IA Y  N   
Sbjct: 269 HGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFT 328

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            EA  L+  M   G++P++++ AS LP+  +  +L   +++H Y+ R ++  ++ L++AL
Sbjct: 329 DEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSAL 388

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +D+Y K G +  AR +F Q    DV   T+MIS Y + G   DA+  F  ++  G+ P+S
Sbjct: 389 IDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNS 448

Query: 401 IAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
           +   SVL AC+    L+ G+  +  I+ +Q + +  +   + + D+  + G+++ AY+  
Sbjct: 449 LTMASVLPACAALAALKLGKELHCDILKKQLENIVNVG--SAITDMYAKCGRLDLAYEFF 506

Query: 460 KQMPMEPNERIWGSLVAA 477
           ++M  E +   W S++++
Sbjct: 507 RRMS-ETDSICWNSMISS 523


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 185/549 (33%), Positives = 306/549 (55%), Gaps = 50/549 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++HA  +    L  N  I   L+  YG  G++  ++ +      +++V +N ++ S   
Sbjct: 218 KQVHAYGLRKGEL--NSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQ 275

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLF 166
           N  + +AL   + M + G +PD +T   VL ACS    L  G ++H   +K G LD N F
Sbjct: 276 NEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 335

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME-SL 225
            G+ LV MY  C  +    RV + M  + +  WN+M+ GYAQN   +EAL +  EME S 
Sbjct: 336 VGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESA 395

Query: 226 RIKPDADTMASLLPSVTNTSP----------------------ENVLS-----------V 252
            +  ++ TMA ++P+   +                        +N L             
Sbjct: 396 GLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIA 455

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-----------GIEPNAIS 301
           K +F K+++++LV+WN +I  Y  +    +A+ +  +M++             ++PN+I+
Sbjct: 456 KRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSIT 515

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           + ++LP+C  LSAL  G++IH Y  +  L  ++ + +ALVDMYAKCG L  +R VFDQ+ 
Sbjct: 516 LMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 575

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            ++V++W  ++ AYGM G   DA+ +   M++ G+ P+ + F+SV +ACSH+G++ EG  
Sbjct: 576 IRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLK 635

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNER-IWGSLVAACCL 480
            F  M + Y + P  +H+AC+VDLLGRAG+V+EAY LI  +P   ++   W SL+ AC +
Sbjct: 636 IFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRI 695

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           ++N++IG +AA ++  L PN + +YVLL+NIY+ AG W     VR+ M ++G++K PG S
Sbjct: 696 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCS 755

Query: 541 -VEMNDQVQ 548
            +E  D+V 
Sbjct: 756 WIEHGDEVH 764



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 136/490 (27%), Positives = 237/490 (48%), Gaps = 52/490 (10%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   K++HA +    +   + ++   L+  Y  CG       VFD I+ +N V +N LI
Sbjct: 108 DMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLI 167

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG---SNSLLVGLQIHCSVVKV 159
            S  +   +  AL  ++ M     +P  +T   V  ACS       LL+G Q+H   ++ 
Sbjct: 168 SSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRK 227

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G + N F  N LVAMYGK G L  ++ +L     +D+VTWN++++   QN +F EAL+  
Sbjct: 228 G-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYL 286

Query: 220 REMESLRIKPDADTMASLLPSVTN-----TSPE--------------------------- 247
           REM    ++PD  T++S+LP+ ++     T  E                           
Sbjct: 287 REMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCN 346

Query: 248 --NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVAS 304
              VLS   +F  + ++ +  WN MI  YA N    EA+ L+++ME   G+  N+ ++A 
Sbjct: 347 CKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAG 406

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           V+PAC    A      IH +V ++ L  +  ++NAL+DMY++ G +  A+ +F +M  +D
Sbjct: 407 VVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRD 466

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLM-----------SGLCPDSIAFVSVLSACSHA 413
           +V+W ++I+ Y  S +  DA+ +  KM +             L P+SI  +++L +C+  
Sbjct: 467 LVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAAL 526

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
             L +G+       +   L   +   + LVD+  + G ++ +  +  Q+P+  N   W  
Sbjct: 527 SALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIR-NVITWNV 584

Query: 474 LVAACCLYSN 483
           +V A  ++ N
Sbjct: 585 IVMAYGMHGN 594



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 188/400 (47%), Gaps = 39/400 (9%)

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           L+RS V + L  +A+  Y +M V G  PD + +P +LKA +    + +G QIH  V K G
Sbjct: 64  LLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFG 123

Query: 161 LDYNLFN-GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
              +     N LV +Y KCG      +V + +  ++ V+WNS+++      +++ AL+  
Sbjct: 124 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAF 183

Query: 220 REMESLRIKPDADTMASLLPSVTNTS-PENVL---------------------------- 250
           R M    ++P + T+ S+  + +N   PE +L                            
Sbjct: 184 RCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINTLVAMYG 243

Query: 251 ------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
                 S K +    + ++LV+WN +++    N    EA++   +M + G+EP+  +++S
Sbjct: 244 KMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISS 303

Query: 305 VLPACGDLSALLLGRKIHRY-VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           VLPAC  L  L  G+++H Y ++   L  N  + +ALVDMY  C  +     VFD M  +
Sbjct: 304 VLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDR 363

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMS-GLCPDSIAFVSVLSACSHAGLLEEGRYY 422
            +  W +MI+ Y  +    +A+ LF +M  S GL  +S     V+ AC  +G   +    
Sbjct: 364 KIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAI 423

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
              + ++     R    A L+D+  R GK++ A  +  +M
Sbjct: 424 HGFVVKRGLDRDRFVQNA-LMDMYSRLGKIDIAKRIFGKM 462



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 1/147 (0%)

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           W  ++     +++  EAV  Y+ M V GI+P+  +  ++L A  DL  + LG++IH +V 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 327 RKKLQ-PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
           +      ++ + N LV++Y KCG       VFD++  ++ VSW S+IS+     +   A+
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSH 412
             F  ML   + P S   VSV  ACS+
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSN 207


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 183/510 (35%), Positives = 285/510 (55%), Gaps = 35/510 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDP 128
           L+  Y   G + D   VFD +  +++V +N+++  YV+N L   AL  ++ M        
Sbjct: 148 LVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQH 207

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D       L AC    S + G +IH  V++ GL+ ++  G  L+ MY KCG +  AR V 
Sbjct: 208 DSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVF 267

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS--- 245
             MP + VVTWN M+ GYA N R DEA D   +M +  ++ +  T  +LL +   T    
Sbjct: 268 ATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSL 327

Query: 246 ---------------PENVL---------------SVKEMFLKLDNKNLVSWNVMIAVYA 275
                          P  VL               S +++F K+ NK LVSWN MIA Y 
Sbjct: 328 YGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYM 387

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
              M  EA+ L+L++    + P+  ++++V+PA   L +L   R+IH Y+       N  
Sbjct: 388 YKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTL 447

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           + NA++ MYA+ G +  +R +FD+M  +DV+SW +MI  Y + GQG  A+ +F +M  +G
Sbjct: 448 IMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNG 507

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           L P+   FVSVL+ACS +GL++EG  +F +M ++Y ++P+IEH+ C+ DLLGR G + E 
Sbjct: 508 LQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREV 567

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
              I+ MP++P  R+WGSL+ A    +++DI   AA+ IF L  + +G Y++LS++YA A
Sbjct: 568 LQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADA 627

Query: 516 GRWGDVKRVRKFMNSKGIKKM-PGASVEMN 544
           GRW DV+RVR  M  KG+++  P + VE++
Sbjct: 628 GRWEDVERVRLLMKEKGLRRTEPISLVELH 657



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 144/537 (26%), Positives = 244/537 (45%), Gaps = 80/537 (14%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+ +  A G+M +       +   +    NV+IR + +  L   AL  Y+ M   G  PD
Sbjct: 47  LVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPD 106

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +T+P V+K C+    L  G   H  V+K+GL+++++  N LVA Y K G +++A RV +
Sbjct: 107 RFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFD 166

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPDADTMASLLPS-------- 240
            MP +D+VTWN MV GY  NG    AL   +EM ++L ++ D+  + + L +        
Sbjct: 167 GMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEFSSM 226

Query: 241 --------VTNTSPENVLSV-----------------KEMFLKLDNKNLVSWNVMIAVYA 275
                   V     E  + V                 + +F  +  + +V+WN MI  YA
Sbjct: 227 QGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYA 286

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            N  P EA D ++QM   G++   ++  ++L AC    + L GR +H YV R++  P++ 
Sbjct: 287 LNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVV 346

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           LE AL++MY K G +  +  +F ++  + +VSW +MI+AY       +A+ LF ++L   
Sbjct: 347 LETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQP 406

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRY-------------------YFKIMTEQYKLVPRI 436
           L PD     +V+ A    G L   R                       +      +V   
Sbjct: 407 LYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASR 466

Query: 437 EHFACLVD--------------LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           E F  +V               + G+     E +D +K   ++PNE  + S++ AC +  
Sbjct: 467 EIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSG 526

Query: 483 NMDIGILAADHIFHLAPNQSG------YYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
            +D G +     F+L   + G      +Y  ++++    GR GD++ V +F+ S  I
Sbjct: 527 LVDEGWMH----FNLMLQEYGMIPQIEHYGCMTDLL---GREGDLREVLQFIESMPI 576



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 168/363 (46%), Gaps = 38/363 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H   +I   L  +  +G  L+  Y  CG++   R VF  +  + VV +N +I  Y  
Sbjct: 229 KEIHG-YVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYAL 287

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    +A   +  M   G   +  T   +L AC+ + S L G  +H  VV+     ++  
Sbjct: 288 NERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVL 347

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L+ MYGK G ++ + ++   + +K +V+WN+M+A Y     + EA+ +  E+ +  +
Sbjct: 348 ETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPL 407

Query: 228 KPDADTMASLLPSVT----------------------NT-----------SPENVLSVKE 254
            PD  TM++++P+                        NT              +V++ +E
Sbjct: 408 YPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASRE 467

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F K+ +K+++SWN MI  YA +     A++++ +M+ +G++PN  +  SVL AC  +S 
Sbjct: 468 IFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTAC-SVSG 526

Query: 315 LLLGRKIH--RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTSM 371
           L+    +H    ++   + P +     + D+  + G L E     + M        W S+
Sbjct: 527 LVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVWGSL 586

Query: 372 ISA 374
           ++A
Sbjct: 587 LTA 589



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 107/254 (42%), Gaps = 37/254 (14%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++  +++H+  II      N  I   ++  Y   G +V +R +FD++ +K+V+ +N +I 
Sbjct: 427 LRHCRQIHS-YIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIM 485

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            Y  +     AL ++  M  +G  P+  T+  VL ACS S  +  G           + +
Sbjct: 486 GYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGW----------MHF 535

Query: 164 NL-FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
           NL     G++      GC+ +                          GR  +  +V + +
Sbjct: 536 NLMLQEYGMIPQIEHYGCMTDLL------------------------GREGDLREVLQFI 571

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVLS-VKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
           ES+ I P +    SLL +  N +  ++     E   +L++ N   + V+ ++YA+     
Sbjct: 572 ESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWE 631

Query: 282 EAVDLYLQMEVHGI 295
           +   + L M+  G+
Sbjct: 632 DVERVRLLMKEKGL 645



 Score = 40.0 bits (92), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 5/138 (3%)

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
           +L P      +LV   A  G + EA      +R  D      MI  +  +G    A+A +
Sbjct: 36  RLPPKRGSSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAY 95

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC--LVDLL 446
             ML  G  PD   F  V+  C+  G L+EGR    ++    KL    + + C  LV   
Sbjct: 96  RGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVI---KLGLEHDVYTCNSLVAFY 152

Query: 447 GRAGKVEEAYDLIKQMPM 464
            + G VE+A  +   MP+
Sbjct: 153 AKLGLVEDAERVFDGMPV 170


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 174/543 (32%), Positives = 289/543 (53%), Gaps = 40/543 (7%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC ++     D+   KK+H Q++      +    GL  +  Y  CG++     VF++IT 
Sbjct: 151 ACTEL----QDLDNGKKIHCQLVKVPSFDNVVLTGL--LDMYAKCGEIKSAHKVFNDITL 204

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           +NVV +  +I  YV N L  + L ++  M  +    + YTY  ++ AC+  ++L  G   
Sbjct: 205 RNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWF 264

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  +VK G++ +      L+ MY KCG +  ARRV N+    D+V W +M+ GY  NG  
Sbjct: 265 HGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSV 324

Query: 213 DEALDVCREMESLRIKPDADTMASLLPS---------------------VTNTSPENVL- 250
           +EAL + ++M+ + IKP+  T+AS+L                       + +T+  N L 
Sbjct: 325 NEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNVANALV 384

Query: 251 ----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                       K +F     K++V+WN +I+ ++ N    EA+ L+ +M    + PN +
Sbjct: 385 HMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGV 444

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKL--QPNLRLENALVDMYAKCGSLTEARTVFD 358
           +VAS+  AC  L +L +G  +H Y  +       ++ +  AL+D YAKCG    AR +FD
Sbjct: 445 TVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFD 504

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
            +  ++ ++W++MI  YG  G    ++ LF +ML     P+   F S+LSAC H G++ E
Sbjct: 505 TIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNE 564

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           G+ YF  M + Y   P  +H+ C+VD+L RAG++E+A D+I++MP++P+ R +G+ +  C
Sbjct: 565 GKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGC 624

Query: 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
            ++S  D+G +    +  L P+ + YYVL+SN+YA  GRW   K VR  M  +G+ K+ G
Sbjct: 625 GMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSKIAG 684

Query: 539 ASV 541
            S 
Sbjct: 685 HST 687



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 152/536 (28%), Positives = 248/536 (46%), Gaps = 50/536 (9%)

Query: 34  CNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
           C  +L K  +I +L++ H  ++    L  + SI  KL+  YG  G   D R VFD+I   
Sbjct: 47  CFLLLSKCTNIDSLRQSHG-VLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEP 105

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           +   + V++R Y  N    + + +Y  +  HGF  D   +   LKAC+    L  G +IH
Sbjct: 106 DFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIH 165

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
           C +VKV    N+    GL+ MY KCG +K A +V ND+  ++VV W SM+AGY +N   +
Sbjct: 166 CQLVKVPSFDNVVL-TGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCE 224

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPEN--------------------VLSVK 253
           E L +   M    +  +  T  +L+ + T  S  +                    V S+ 
Sbjct: 225 EGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLL 284

Query: 254 EMFLKL-------------DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
           +M++K               + +LV W  MI  Y +N    EA+ L+ +M+   I+PN +
Sbjct: 285 DMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCV 344

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           ++ASVL  CG +  L LGR +H    +  +  +  + NALV MYAKC    +A+ VF+  
Sbjct: 345 TIASVLSGCGLIENLELGRSVHGLSIKVGIW-DTNVANALVHMYAKCYQNRDAKYVFEME 403

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             +D+V+W S+IS +  +G  ++A+ LF +M    + P+ +   S+ SAC+  G L  G 
Sbjct: 404 SEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGS 463

Query: 421 YYFKIMTEQYKLVPRIEHFA-CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
                  +   L     H    L+D   + G  + A  LI     E N   W +++    
Sbjct: 464 SLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSA-RLIFDTIEEKNTITWSAMIGG-- 520

Query: 480 LYSNMDIGILAADHIFHL-----APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530
            Y      I + +    +      PN+S +    ++I +  G  G V   +K+ +S
Sbjct: 521 -YGKQGDTIGSLELFEEMLKKQQKPNESTF----TSILSACGHTGMVNEGKKYFSS 571


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 179/510 (35%), Positives = 288/510 (56%), Gaps = 45/510 (8%)

Query: 86  VFDEITNKNVVF-FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
           +F++  ++  V+ +N LI          ++L  +  M      P+  T+PC +K+CS   
Sbjct: 37  LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
            L  G Q H   +  G + +LF  + L+ MY KCG L  AR + +++P +++VTW S++ 
Sbjct: 97  DLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLIT 156

Query: 205 GYAQNGRFDEALDVCREM---------ESLRIKPDADTMASLLPSVTNTS----PENVLS 251
           GY QN    EAL V +E          E +    D+  M S+L + +  S     E V  
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHG 216

Query: 252 V-----------------------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
           V                             +++F  +  K++VSWN MIAVYA N +  +
Sbjct: 217 VAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTD 276

Query: 283 AVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
           A +++  M +  G + N ++++++L AC    AL +G  +H  V +     N+ +  +++
Sbjct: 277 AFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSII 336

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           DMY KCG    AR  FD M+ ++V SWT+MI+ YGM G   +A+ +F +M+ +G+ P+ I
Sbjct: 337 DMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYI 396

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
            F+SVL+ACSHAG LEEG  +F  M+ +Y + P +EH+ C+VDLLGRAG ++EAY+LIK 
Sbjct: 397 TFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKS 456

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
           M +  +  +WGSL+AAC ++ ++++  ++A  +F L P+  GYYVLL+NIYA AGRW DV
Sbjct: 457 MKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDV 516

Query: 522 KRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           +R+R  +  +G+ K PG S VE+  +V + 
Sbjct: 517 ERMRILVKDRGLVKPPGYSLVELKGRVHVF 546



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 180/377 (47%), Gaps = 46/377 (12%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+ + K+ H Q ++     S+  +   L+  Y  CG++ + R +FDEI  +N+V +  LI
Sbjct: 97  DLNSGKQAHQQALVFG-FESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLI 155

Query: 103 RSYVNNYLYYDALHVYK---------NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
             YV N   ++AL V+K         N    G   D      VL ACS  ++  V   +H
Sbjct: 156 TGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVH 215

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
              +KVGLD  +   N L+  Y KCG +  +R+V +DM  KDVV+WNSM+A YAQNG   
Sbjct: 216 GVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLST 275

Query: 214 EALDVCREM-ESLRIKPDADTMASLLPSVTNTSP-----------------ENVL---SV 252
           +A +V   M ++   K +  T+++LL +  +                     NV+   S+
Sbjct: 276 DAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSI 335

Query: 253 KEMFLK-------------LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
            +M+ K             +  KN+ SW  MIA Y  +    EA+D++ QM   G++PN 
Sbjct: 336 IDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNY 395

Query: 300 ISVASVLPACGDLSALLLG-RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
           I+  SVL AC     L  G R  +       ++P +     +VD+  + G + EA  +  
Sbjct: 396 ITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIK 455

Query: 359 QMRC-QDVVSWTSMISA 374
            M+  +D V W S+++A
Sbjct: 456 SMKVRRDFVLWGSLLAA 472


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 172/478 (35%), Positives = 272/478 (56%), Gaps = 37/478 (7%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           FN L+  Y        A  VY+ +   GF PD +T+P VLK+C+    +  G Q+H  ++
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           K+G   N++  N LV  Y  C    +A RV ++M  +DVV+W  +++GY + G FDEA+ 
Sbjct: 62  KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121

Query: 218 VCREMESLRIKPDADTMASLL------------PSVTNTSPENVLSV------------- 252
           +   M+   ++P+A T  S+L              +   S ++   V             
Sbjct: 122 LFLRMD---VEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYV 178

Query: 253 --------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
                   K++F +L  K++VSW  +I+     + P EA++L+  M+  GIEP+ I + S
Sbjct: 179 KCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTS 238

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           VL AC  L AL  GR +H +++RK ++ ++++  A+VDMYAKCG +  +  +F+ M  ++
Sbjct: 239 VLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKN 298

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
           V++W ++++   M G  Y  + LF +M+  G+ P+ + F+++L+AC H GL+ EGR YF 
Sbjct: 299 VLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFN 358

Query: 425 IMT-EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
            M  +QY L PR+EH+ C+VDLL RA  ++EA +L K MPM P+ RI G+L++AC    N
Sbjct: 359 WMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENGN 418

Query: 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
            ++     D    L  + SG YVLLSNI+A   RW DV R+R+ M  KGIKK PG++V
Sbjct: 419 TELPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGSTV 476



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 161/349 (46%), Gaps = 39/349 (11%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           K+  I   +++H  +II      N  +   L+  Y  C +  D   VFDE+  ++VV + 
Sbjct: 46  KFVGIGEGRQVHG-VIIKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWT 104

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            +I  YV   L+ +A+ ++  M V   +P+  T+  VL AC     L VG  IH    K 
Sbjct: 105 GVISGYVRAGLFDEAVGLFLRMDV---EPNAATFVSVLVACGRKGYLSVGKGIHGLSFKS 161

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
                L   N L+ MY KCGCL  A++V +++  KD+V+W S+++G  Q     EAL++ 
Sbjct: 162 AFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELF 221

Query: 220 REMESLRIKPDADTMASLLPSVTNTSPEN------------------------------- 248
           ++M+S  I+PD   + S+L +       +                               
Sbjct: 222 QDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKC 281

Query: 249 --VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
             +    ++F  + +KN+++WN ++   A +    + ++L+ +M   G+ PN ++  ++L
Sbjct: 282 GCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAIL 341

Query: 307 PACGDLSALLLGRKIHRYVERKK--LQPNLRLENALVDMYAKCGSLTEA 353
            AC     +  GR+   +++ ++  L P L     +VD+  +   L EA
Sbjct: 342 TACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEA 390



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 131/262 (50%), Gaps = 8/262 (3%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           LM  Y  CG +   + VFDE+  K++V +  +I   V      +AL ++++M   G +PD
Sbjct: 173 LMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPD 232

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
                 VL AC+   +L  G  +H  + +  + +++  G  +V MY KCGC++ + ++ N
Sbjct: 233 GIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFN 292

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            MP K+V+TWN+++ G A +G   + L++  EM  + ++P+  T  ++L +  +    N 
Sbjct: 293 GMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNE 352

Query: 250 LSVKEMFLKLDNKN----LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                 ++K    N    L  +  M+ +     +  EA++L   M    + P+   + ++
Sbjct: 353 GRQYFNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMP---MSPDVRIMGAL 409

Query: 306 LPACGDLSALLLGRKI-HRYVE 326
           L AC +     L ++I  R+VE
Sbjct: 410 LSACKENGNTELPQEILDRFVE 431



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 113/267 (42%), Gaps = 35/267 (13%)

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
            IG  ++  Y  CG +  +  +F+ + +KNV+ +N L+     +   Y  L +++ M   
Sbjct: 269 QIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRV 328

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G  P+  T+  +L AC            HC +V  G  Y  FN      M G+       
Sbjct: 329 GMRPNEVTFLAILTACC-----------HCGLVNEGRQY--FN-----WMKGQ------- 363

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV-TN 243
                ++P + +  +  MV    +    DEAL++ + M    + PD   M +LL +   N
Sbjct: 364 ---QYNLPPR-LEHYGCMVDLLCRARLLDEALELTKAMP---MSPDVRIMGALLSACKEN 416

Query: 244 TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
            + E    + + F++LD+ +   + ++  ++A N    +   +   M+  GI+    S  
Sbjct: 417 GNTELPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGS-- 474

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKL 330
           +V+   G     ++G   H   +R +L
Sbjct: 475 TVIELDGKAHEFIVGDTRHPQDKRIRL 501


>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
 gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
          Length = 545

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 168/473 (35%), Positives = 267/473 (56%), Gaps = 47/473 (9%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-------SVHGFD-PDCYTYPCVL 137
           VF +I   N+   N +I++Y  N+L+ DA+ VY  M       S  GF   D +TYP +L
Sbjct: 64  VFAQIPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLL 123

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
           KAC    +  +G Q+H  V + G + +    N L+ MY +CG L  AR+  + M  KDVV
Sbjct: 124 KACGALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVV 183

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
           +WN++++ +A+ G+   A                                     +E+F 
Sbjct: 184 SWNTLISAHARMGQMRRA-------------------------------------RELFY 206

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
            + +K +VSW  +++ Y        AV+++  M++ G EP+ +S+ +VLPAC  L AL L
Sbjct: 207 SMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPDDVSIVAVLPACAQLGALEL 266

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           GR I+ Y  +  +   + + NAL++MYAKCG + EA  +F  M  +DV+SW++ I     
Sbjct: 267 GRWIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAA 326

Query: 378 SGQGYDAVALFSKMLMSG-LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
            G+  +AV LF  M   G + P+ I FV +LSACSHAGL++EG  Y   M E Y + P +
Sbjct: 327 HGRAREAVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGLRYLDQMKEDYGVEPGV 386

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           EH+ C+VDLLGR+G+++ A D I+ MP+ P+ +IWGSL++AC  + +++  ++AA+ +  
Sbjct: 387 EHYGCVVDLLGRSGRIQRALDTIRGMPVPPDGKIWGSLLSACRSHGDVETAVVAAERLVE 446

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           L P   G  V+L+N+Y  AGRWG+V   RK + S+  +K PG S +E+++ V+
Sbjct: 447 LEPGDVGNLVMLANVYGAAGRWGEVASTRKEIRSRSTRKTPGCSMIEVDNVVR 499


>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Vitis vinifera]
          Length = 634

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 196/618 (31%), Positives = 308/618 (49%), Gaps = 110/618 (17%)

Query: 28  LLSGDACNDILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR 84
           LLS    N +L    + K L   K+LH  II+   L  +P +  KL++ Y  CG +   +
Sbjct: 20  LLSSFQLNHLLQLCSNSKALHQGKQLHQHIILCG-LDHHPFMLTKLVQMYADCGDLGSAQ 78

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
            +FD+++  NV  +  ++  Y  N L  + +  Y  M + G  PD Y +P V +AC    
Sbjct: 79  ALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLL 138

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDV-------- 196
            L VG+Q+H  VV  G +++L   N L+ MY K G +   RRV ++M  +DV        
Sbjct: 139 WLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMIS 198

Query: 197 ---------------------------VTWNS---------------------------- 201
                                      VTWN+                            
Sbjct: 199 GYVCNGFLEFSVELLASMRIRGFEPDMVTWNTVMDAYCRMGLCDEAWEIFEQIKEPNIIS 258

Query: 202 ---MVAGYAQNGRFDEALDVCREMESLRIK-PDADTMASLLPSVTNTSP----------- 246
              +V+GY++ G  +++L + REM S R+  PD D+++S+L S  +              
Sbjct: 259 LTTLVSGYSRIGNHEKSLGIFREMMSRRVAFPDLDSLSSVLVSCRHLGALVCGQEIHGYG 318

Query: 247 ------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                                   + +     +F  +D  ++V+WN MI  + +  M   
Sbjct: 319 IRSVDSSSFYKSAGAALLTMYVKCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHL 378

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A++ + +M+  GI  N I++++VLPAC DL +   G+++H Y+ +      + + NAL+ 
Sbjct: 379 ALECFSKMQRSGIMNNQITISTVLPAC-DLKS---GKQVHAYITKNSFSSVIPVWNALIH 434

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MY+KCG +  A ++F  M  +D+VSW +MI  +GM G G  A+ L   M  S +CP+S+ 
Sbjct: 435 MYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPNSVT 494

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           F S LSACSH+GL++EG   F  MT  +   P +EHF+C+VDLL RA ++E+A   I++M
Sbjct: 495 FTSALSACSHSGLVDEGMELFHTMTRDFGFTPGMEHFSCVVDLLARADRLEDAVGFIEKM 554

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
           P++P++ IW +L+AAC    N+ +  LAA+ +F L P  +G YV LSNIYA+AGRW D  
Sbjct: 555 PLKPSKHIWSALLAACRAQQNVSVAKLAAEQLFQLEPEHAGNYVTLSNIYARAGRWDDAV 614

Query: 523 RVRKFMNSKGIKKMPGAS 540
            VRK M  +G+ K  G S
Sbjct: 615 AVRKLMEDRGLVKPSGYS 632


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 175/531 (32%), Positives = 299/531 (56%), Gaps = 36/531 (6%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +LH  ++++  L    SI   L+  Y  CG+  D   +F  ++  + V +N +I  YV +
Sbjct: 256 QLHGLVVVSG-LDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQS 314

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
            L  ++L  +  M   G  PD  T+  +L + S   +L    QIHC +++  +  ++F  
Sbjct: 315 GLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLT 374

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           + L+  Y KC  +  A+++ +   S DVV + +M++GY  NG   +AL++ R +  ++I 
Sbjct: 375 SALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKIS 434

Query: 229 PDADTMASLLPSV----------------TNTSPENVLSVK-----------------EM 255
           P+  T+ S+LP +                     +N  ++                  E+
Sbjct: 435 PNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEI 494

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F +L  +++VSWN MI   A +  P+ A+D++ QM V GI  + +S+++ L AC +L + 
Sbjct: 495 FGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSE 554

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             G+ IH ++ +  L  ++  E+ L+DMYAKCG+L  A  VFD M+ +++VSW S+I+AY
Sbjct: 555 SFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSWNSIIAAY 614

Query: 376 GMSGQGYDAVALFSKML-MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
           G  G+  D++ LF +M+  SG  PD I F+ ++S C H G ++EG  +F+ MT+ Y + P
Sbjct: 615 GNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQP 674

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
           + EH+AC+VDL GRAG++ EAY+ +K MP  P+  +WG+L+ A  L+ N+++  +A+  +
Sbjct: 675 QQEHYACVVDLFGRAGRLSEAYETVKSMPFPPDAGVWGTLLGASRLHKNVELAKVASSRL 734

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMN 544
             L P  SGYYVL+SN +A  G W  V +VR  M  + ++K+PG S +E+N
Sbjct: 735 MDLDPWNSGYYVLISNAHANTGEWESVTKVRSLMKEREVQKIPGYSWIEIN 785



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 123/498 (24%), Positives = 228/498 (45%), Gaps = 43/498 (8%)

Query: 21  VLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQM 80
            L  + +LL  D  N  L     ++  K++HA +I+N+ +  +     +++  Y  CG  
Sbjct: 29  TLPRRLSLLLQDCSNLTL-----LRQGKQVHAFVIVNR-ISGDSYTDERILGMYAMCGSF 82

Query: 81  VDTRHVFDEITNK--NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLK 138
            +   +F  + ++  ++  +N +I S+V   L   AL  Y  M   G  PD  T+PC++K
Sbjct: 83  SNCGKMFYRLDSRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVK 142

Query: 139 ACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVT 198
           AC    +      +  +V  +G+D N F  + L+  Y + G +  A ++ + +  KD V 
Sbjct: 143 ACVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVI 202

Query: 199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT-------------- 244
           WN M+ GYA+ G  D  +     M   +I P+A T   +L    +               
Sbjct: 203 WNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVV 262

Query: 245 --------SPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285
                   S +N L              ++F  +   + V+WN MI+ Y  + +  E++ 
Sbjct: 263 VSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLI 322

Query: 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
            + +M   G+ P+AI+ +S+LP+      L   R+IH Y+ R  +  ++ L +AL+D Y 
Sbjct: 323 FFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYF 382

Query: 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
           KC  ++ A+ +F Q    DVV +T+MIS Y  +G   DA+ +F  ++   + P+ I  VS
Sbjct: 383 KCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVS 442

Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME 465
           +L        L+ GR     + ++     R      ++D+  + G++  AY++  ++  +
Sbjct: 443 ILPVIGGLLALKLGRELHGFIIKK-GFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLS-K 500

Query: 466 PNERIWGSLVAACCLYSN 483
            +   W S++  C    N
Sbjct: 501 RDIVSWNSMITRCAQSDN 518



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 166/373 (44%), Gaps = 37/373 (9%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
           + K+ +++  +++H  I+    +  +  +   L+  Y  C  +   + +F +  + +VV 
Sbjct: 346 VSKFENLEYCRQIHCYIM-RHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVV 404

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           F  +I  Y++N L  DAL +++ +      P+  T   +L    G  +L +G ++H  ++
Sbjct: 405 FTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFII 464

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           K G D     G  ++ MY KCG +  A  +   +  +D+V+WNSM+   AQ+     A+D
Sbjct: 465 KKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAID 524

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSPE------------------------------ 247
           + R+M    I  D  ++++ L +  N   E                              
Sbjct: 525 IFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYA 584

Query: 248 ---NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVA 303
              N+ +   +F  +  KN+VSWN +IA Y N+    +++ L+ +M E  G  P+ I+  
Sbjct: 585 KCGNLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFL 644

Query: 304 SVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            ++  C  +  +  G +  R + +   +QP       +VD++ + G L+EA      M  
Sbjct: 645 EIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPF 704

Query: 363 -QDVVSWTSMISA 374
             D   W +++ A
Sbjct: 705 PPDAGVWGTLLGA 717


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 176/458 (38%), Positives = 255/458 (55%), Gaps = 34/458 (7%)

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           NV+ +N L+     +    DA+     M   GF PD     C L A      + VG Q+H
Sbjct: 120 NVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLH 179

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
             VVK G   +      L+ MYGKCG   E  RV ++    DV + N++VAG ++N +  
Sbjct: 180 GYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVS 239

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273
           EAL + RE     I+                                  N+VSW  ++A 
Sbjct: 240 EALRLFREFVGRGIE---------------------------------LNVVSWTSIVAC 266

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
              N    EAVDL+ +M+  GIEPN++++  VLPA  +++AL+ GR  H +  RK    +
Sbjct: 267 CVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHD 326

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
           + + +ALVDMYAKCG + +AR +F+ M  ++VVSW +MI  Y M G+  +AV LF  M  
Sbjct: 327 IYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQS 386

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           S   PD + F  VL ACS AG  EEGR YF  M  ++ + PR+EH+AC+V LLGRAGK++
Sbjct: 387 SKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLD 446

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           +AYD+I QMP EP+  IWGSL+ +C ++ N+ +  +AA+++F L P  +G YVLLSNIYA
Sbjct: 447 DAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYA 506

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
               W  V R+R  M + G+KK  G S +E+ ++V ++
Sbjct: 507 SKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHML 544



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 162/399 (40%), Gaps = 81/399 (20%)

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           F PD    P  LK+CS             +    G+  + F  + L+  Y + G   +AR
Sbjct: 19  FPPDPRLLPSALKSCSALRLARALHA---AAAVAGVSRDAFVASSLLHAYLRFGATADAR 75

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            VL+ MP + VV W++++A +A +G  + A  +   M S  ++P                
Sbjct: 76  SVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEP---------------- 119

Query: 246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                            N+++WN +++    +    +AV   ++M   G  P+A  V+  
Sbjct: 120 -----------------NVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCA 162

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD- 364
           L A GD+  + +G ++H YV +   + +  +  AL+DMY KCG   E   VFD+    D 
Sbjct: 163 LSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDV 222

Query: 365 ----------------------------------VVSWTSMISAYGMSGQGYDAVALFSK 390
                                             VVSWTS+++    +G+  +AV LF +
Sbjct: 223 ASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFRE 282

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH----FACLVDLL 446
           M   G+ P+S+    VL A ++   L  GR         + L     H     + LVD+ 
Sbjct: 283 MQSEGIEPNSVTIPCVLPAFANIAALMHGRS-----AHCFSLRKGFHHDIYVGSALVDMY 337

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
            + G+V +A  + + MP   N   W +++    ++   +
Sbjct: 338 AKCGRVRDARMIFEAMPYR-NVVSWNAMIGGYAMHGEAE 375



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 140/307 (45%), Gaps = 46/307 (14%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   ++LH   ++      +  +   L+  YG CG+  +   VFDE ++ +V   N L+
Sbjct: 171 DVAVGEQLHG-YVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALV 229

Query: 103 ----------------RSY-------------------VNNYLYYDALHVYKNMSVHGFD 127
                           R +                   V N    +A+ +++ M   G +
Sbjct: 230 AGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIE 289

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           P+  T PCVL A +   +L+ G   HC  ++ G  ++++ G+ LV MY KCG +++AR +
Sbjct: 290 PNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMI 349

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE 247
              MP ++VV+WN+M+ GYA +G  + A+ + R M+S + KPD  T   +L + +     
Sbjct: 350 FEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWT 409

Query: 248 NVLSVKEMFLKLDNKNLVS-----WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
                +  F ++ +K+ +S     +  M+ +        +A D+  QM     EP+    
Sbjct: 410 E--EGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMP---FEPDGCIW 464

Query: 303 ASVLPAC 309
            S+L +C
Sbjct: 465 GSLLGSC 471


>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 176/563 (31%), Positives = 310/563 (55%), Gaps = 72/563 (12%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LHA+++++  +  N  +G KL+  Y   G + D  +VF +I  KN+  +N L+ SY  
Sbjct: 23  KQLHARLVLSSVVPDN-FLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALLISYTL 81

Query: 108 NYLYYDALHVYK---NMSVHGFDPDCYTYPCVLKACSG--SNSLLVGLQIHCSVVKVGLD 162
           + ++ D L ++    N +     PD +T  C LKA +   SNS L   ++H  +++ GL+
Sbjct: 82  HNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFSNSGLAK-EVHSFILRRGLE 140

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
           Y++F  N L+  Y +C  L  AR + + MP +D+V+WN+M+AGY+Q G +++  ++ R M
Sbjct: 141 YDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVM 200

Query: 223 -ESLRIKPDADTMASLLPSVTNTSP------------ENVLSV----------------- 252
             SL +KP+A T  S+L +   ++             E+ + +                 
Sbjct: 201 LSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGS 260

Query: 253 ----KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ------------------- 289
               +E+F ++  K+ +++  MI+ Y  +    +A+DL+ +                   
Sbjct: 261 LDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQN 320

Query: 290 ------------MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
                       M+ HG  PN +++AS+LP     S L  G++IH Y  R     N+ + 
Sbjct: 321 NRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVA 380

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
            A++D YAKCG L  A+ VFDQ++ + +++WTS+ISAY + G    A++LF +ML +G+ 
Sbjct: 381 TAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQ 440

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
           PD + F SVL+AC+H+G L+E    F ++  +Y + P +EH+AC+V +L RAGK+ +A +
Sbjct: 441 PDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVE 500

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
            I +MP+EP  ++WG+L+    +  ++++G    D +F + P  +G YV+++N+Y+++GR
Sbjct: 501 FISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIMANLYSQSGR 560

Query: 518 WGDVKRVRKFMNSKGIKKMPGAS 540
           W D   +R  M    +KK+PG S
Sbjct: 561 WKDADTIRDLMKEVRLKKIPGNS 583



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 162/357 (45%), Gaps = 69/357 (19%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           Y  +++ C+      VG Q+H  +V   +  + F G+ L++ Y K G +++A  V   +P
Sbjct: 6   YGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIP 65

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREM---ESLRIKPDADTMASLLPSVTNTSPENV 249
            K++ +WN+++  Y  +    + L +   +    S  +KPD  T+   L ++ +    + 
Sbjct: 66  RKNIFSWNALLISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFSNSG 125

Query: 250 LS----------------------------------VKEMFLKLDNKNLVSWNVMIAVYA 275
           L+                                   + MF ++  +++VSWN M+A Y+
Sbjct: 126 LAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGYS 185

Query: 276 NNSMPAEAVDLY-LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
                 +  +L+ + +    ++PNA++  SVL AC   + L+ G ++HR+V   +++ ++
Sbjct: 186 QGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDV 245

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY---GMSGQGYD-------- 383
            L NA++ +YAKCGSL  AR +F++M  +D +++ SMIS Y   G   Q  D        
Sbjct: 246 SLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQERP 305

Query: 384 --------------------AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
                               AV +F  M   G  P+++   S+L   SH   L+ G+
Sbjct: 306 RLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGK 362



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 7/128 (5%)

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           N  +   ++  C D     +G+++H  +    + P+  L + L+  Y+K GS+ +A  VF
Sbjct: 2   NYSAYGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVF 61

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG---LCPDSIAFVSVLSAC---- 410
            ++  +++ SW +++ +Y +     D + LFS ++ S    + PD       L A     
Sbjct: 62  GKIPRKNIFSWNALLISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLF 121

Query: 411 SHAGLLEE 418
           S++GL +E
Sbjct: 122 SNSGLAKE 129


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 176/484 (36%), Positives = 274/484 (56%), Gaps = 43/484 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDP 128
           LM  Y   G++ + R VF+E+  ++VV +NVLI  YV    Y DA+ V++ M       P
Sbjct: 173 LMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRP 232

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           +  T    L AC     L +G +IH   V+  L + +  GN LV MY KCG L  AR + 
Sbjct: 233 NEATVVSTLSACIALKMLELGKEIH-RYVREQLGFTIKIGNALVDMYCKCGHLSIAREIF 291

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
           NDMP K V+ W SMV+GY   G+ DEA                                 
Sbjct: 292 NDMPIKTVICWTSMVSGYVNCGQLDEA--------------------------------- 318

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
               +E+F +   +++V W  MI  Y   +   +AV L+ +M++  + P+  ++ ++L  
Sbjct: 319 ----RELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTG 374

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  L  L  G+ IH Y++  K+  +  +  AL++MYAKCG + ++  +F+ ++ +D  SW
Sbjct: 375 CAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASW 434

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
           TS+I    M+G+   A+ LF++M+ +G+ PD I F+ VLSACSH GL+EEGR +F+ MT 
Sbjct: 435 TSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTA 494

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI---WGSLVAACCLYSNMD 485
            Y++ P++EH+ CL+DLLGRAG+++EA +LI++ P   NE I   +G+L++AC  + N++
Sbjct: 495 VYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVE 554

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMN 544
           +G   A  +  +    S  + LL+NIYA A RW DV +VR+ M   G+KK+PG +SVE+N
Sbjct: 555 MGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVN 614

Query: 545 DQVQ 548
             V 
Sbjct: 615 GIVH 618


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 172/500 (34%), Positives = 279/500 (55%), Gaps = 37/500 (7%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VFD + +++ + +N +I    +N L  +A+ ++  M + G + D  T   VL AC+ S+ 
Sbjct: 467 VFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHY 526

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
             VG  +H   VK GL       N L+ MY  C       ++  +M  K+VV+W +M+  
Sbjct: 527 WFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITS 586

Query: 206 YAQNGRFDEALDVCREMESLRIKPDA----------------------------DTMASL 237
           Y + G FD+   + +EM    IKPD                             + M  L
Sbjct: 587 YTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKL 646

Query: 238 LPSVTNTSPENVLSVKEM------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
           LP V N   E  ++ + M      F  + NK+++SWN +I  Y+ N+   E+  L+  M 
Sbjct: 647 LP-VANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDML 705

Query: 292 VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351
           +   +PN +++  +LPA   +S+L  GR+IH Y  R+    +    NALVDMY KCG+L 
Sbjct: 706 LQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALL 764

Query: 352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
            AR +FD++  ++++SWT MI+ YGM G G DAVALF +M  SG+ PD+ +F ++L AC 
Sbjct: 765 VARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACC 824

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIW 471
           H+GL  EG  +F  M ++YK+ P+++H+ C+VDLL   G ++EA++ I+ MP+EP+  IW
Sbjct: 825 HSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIW 884

Query: 472 GSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531
            SL+  C ++ ++ +    AD +F L P  +GYYVLL+NIYA+A RW  VK+++  +  +
Sbjct: 885 VSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGR 944

Query: 532 GIKKMPGAS-VEMNDQVQII 550
           G+++  G S +E+  +V + 
Sbjct: 945 GLRENTGCSWIEVRGKVHVF 964



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 189/392 (48%), Gaps = 35/392 (8%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           + ++G KL+  Y  CG M   R VFD + +K NV  +N+++  Y     + ++L +++ M
Sbjct: 342 DEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQM 401

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              G  PD +   C+LK  +  +    GL  H  +VK+G        N L++ Y K   +
Sbjct: 402 HELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMI 461

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS- 240
             A  V + MP +D ++WNS+++G   NG   EA+++   M     + D+ T+ S+LP+ 
Sbjct: 462 DNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPAC 521

Query: 241 ---------------------VTNTSPENVL-----------SVKEMFLKLDNKNLVSWN 268
                                +  TS  N L           S  ++F  +  KN+VSW 
Sbjct: 522 ARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWT 581

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
            MI  Y    +  +   L  +M + GI+P+  +V SVL       +L  G+ +H Y  R 
Sbjct: 582 AMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRN 641

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
            ++  L + NAL++MY  C ++ EAR VFD +  +D++SW ++I  Y  +    ++ +LF
Sbjct: 642 GMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLF 701

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           S ML+    P+++    +L A +    LE GR
Sbjct: 702 SDMLLQ-FKPNTVTMTCILPAVASISSLERGR 732



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 188/400 (47%), Gaps = 45/400 (11%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNK--NVVFFNVLIRSYVNNYLYYDALHVYKNMSV 123
           +G +L+  Y  CG +   R VFDE+  +  +V  +  L+ +Y     + + + +++ M  
Sbjct: 132 LGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQC 191

Query: 124 HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183
            G  PD +   CVLK  +   S+  G  IH  + K+GL       N L+A+Y +CGC+++
Sbjct: 192 CGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMED 251

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           A +V + M ++D ++WNS ++GY  NG  D A+D+  +M S   +  + T+ S+LP+   
Sbjct: 252 AMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAE 311

Query: 244 TSPE------------------------------------------NVLSVKEMFLKLDN 261
              E                                          ++ S + +F  + +
Sbjct: 312 LGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPS 371

Query: 262 K-NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
           K N+  WN+++  YA  +   E++ L+ QM   GI P+  +++ +L     LS    G  
Sbjct: 372 KGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLV 431

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
            H Y+ +        + NAL+  YAK   +  A  VFD+M  QD +SW S+IS    +G 
Sbjct: 432 AHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGL 491

Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             +A+ LF +M M G   DS   +SVL AC+ +     GR
Sbjct: 492 NSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGR 531



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 161/343 (46%), Gaps = 36/343 (10%)

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
           S+   L+  Y  C     T  +F  +  KNVV +  +I SY    L+     + + M + 
Sbjct: 547 SLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLD 606

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G  PD +    VL   +G  SL  G  +H   ++ G++  L   N L+ MY  C  ++EA
Sbjct: 607 GIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEA 666

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           R V + + +KD+++WN+++ GY++N   +E+  +  +M  L+ KP+  TM  +LP+V + 
Sbjct: 667 RLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDM-LLQFKPNTVTMTCILPAVASI 725

Query: 245 SPEN---------------------------------VLSVKEMFLKLDNKNLVSWNVMI 271
           S                                    +L  + +F +L  KNL+SW +MI
Sbjct: 726 SSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMI 785

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KL 330
           A Y  +    +AV L+ QM   G+EP+  S +++L AC        G K    + ++ K+
Sbjct: 786 AGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKI 845

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMI 372
           +P L+    +VD+ +  G+L EA    + M  + D   W S++
Sbjct: 846 EPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLL 888



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 120/255 (47%), Gaps = 10/255 (3%)

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           W  +++ YA      E V L+ QM+  G+ P+A +V+ VL     L ++  G  IH  +E
Sbjct: 166 WTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLE 225

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           +  L     + NAL+ +Y++CG + +A  VFD M  +D +SW S IS Y  +G    AV 
Sbjct: 226 KLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVD 285

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YYFK--IMTEQYKLVPRIEHF- 439
           LFSKM   G    S+  +SVL AC+  G    G+    Y  K  ++ +   +   I+   
Sbjct: 286 LFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEAL 345

Query: 440 -ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAAD--HIFH 496
            + LV +  + G +  A  +   MP + N  +W  ++      +  +  +L  +  H   
Sbjct: 346 GSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELG 405

Query: 497 LAPNQSGYYVLLSNI 511
           + P++     LL  I
Sbjct: 406 ITPDEHALSCLLKCI 420



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 77/165 (46%), Gaps = 4/165 (2%)

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQP-NLRLENALVDMYAKCGSLTEARTVFDQ 359
           S  +V+  CG+  +L   R+ H  V           L   LV  Y KCG L  AR VFD+
Sbjct: 96  SYCAVVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDE 155

Query: 360 M--RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           M  R  DV  WTS++SAY  +G   + V+LF +M   G+ PD+ A   VL   +  G + 
Sbjct: 156 MPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSIT 215

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           EG     ++ E+  L         L+ L  R G +E+A  +   M
Sbjct: 216 EGEVIHGLL-EKLGLGEACAVANALIALYSRCGCMEDAMQVFDSM 259


>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 550

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 176/498 (35%), Positives = 293/498 (58%), Gaps = 17/498 (3%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH---VFDEITNKNVVFFNVLIR 103
           L + HA +I++  L S+P    +L+          D  H   +F    N +   FN +I 
Sbjct: 27  LHQAHAHLIVSG-LASHPFTVTRLLACAALSPSASDLPHAKTIFLHTHNPSPFMFNTIIM 85

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           +        D++  Y  M   G  PD +T+P ++K+ S S + L+G Q+H  VVK GLD 
Sbjct: 86  ASSRTL---DSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQLHAHVVKFGLDR 142

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPS-KDVVTWNSMVAGYAQNGRFDEALDVCREM 222
           ++F  N ++A+Y     L+ AR+V ++  S  DVV+W +++ G++ +G+ DEA    R++
Sbjct: 143 DVFVVNNMIALYSSFRELRSARKVFDESYSLVDVVSWTTLITGFSNSGQIDEA----RKI 198

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
             L    +  +  +++     +S  N    +++F ++ +++  SW+ M++ Y+   M  E
Sbjct: 199 FDLMPLKNTVSWNAMISGYAGSSRIN--EARKLFDEMPDRDAASWSAMVSGYSQLGMCNE 256

Query: 283 AVDLYLQMEVHGIE--PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
           A+DL+++M V G +  PN  ++ S + AC  L AL  GR +H Y++ KKL+ N+ L   L
Sbjct: 257 ALDLFMEM-VTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRINVTLGTVL 315

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +DMY KCGS+ +A  VF+ M  ++V SW SMI+   ++G G +A+ALF KM   G  P++
Sbjct: 316 LDMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNA 375

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           I F+++L+ CSH+GL+ EGR+ F +MT+ Y + P+++H+ C+VDLLGRAG V+EA D ++
Sbjct: 376 ITFIALLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFVE 435

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD 520
           +MPM+P+  +WG+LV AC ++  +++G      +  L P+  G Y LL NI+A A RW D
Sbjct: 436 KMPMKPHSELWGALVGACRIHGQVELGEELGKRLIDLEPHHGGRYALLCNIFAAAQRWDD 495

Query: 521 VKRVRKFMNSKGIKKMPG 538
           V  VR     + + K PG
Sbjct: 496 VAMVRDLEKGRKVLKNPG 513


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 187/528 (35%), Positives = 295/528 (55%), Gaps = 31/528 (5%)

Query: 34  CNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLM-RTYGACGQMVD-TRHVFDEIT 91
           C+ +L     +K LK++HA +     L ++P I  KL+  +  +    +D  R +F    
Sbjct: 8   CSSLLTNCRSLKNLKQVHAYVC-KTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFP 66

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP-DCYTYPCVLKACSGSNSLLVGL 150
           N +V   N LIR    +    ++L  +  M      P D +++  +LKA +   SL  G+
Sbjct: 67  NPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGI 126

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
           Q+HC  +  GLD +LF G  LV+MY +CG +  A++V  +M   +VV WN++V    + G
Sbjct: 127 QLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCG 186

Query: 211 RFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS----------VKEMFLKLD 260
                 DV            AD M + +P    TS   +L+           +++FL++ 
Sbjct: 187 ------DV----------KGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMP 230

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
            K+ VSW+ MI  +A+N    EA   + +++  G+ PN +S+   L AC D  A+  G+ 
Sbjct: 231 VKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKI 290

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM-RCQDVVSWTSMISAYGMSG 379
           +H ++E+      + + NAL+D Y+KCG++  AR VF++M   + +VSWTSMI+   M G
Sbjct: 291 LHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHG 350

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
            G +A+ LF +M  SG+ PD IAF+S+L ACSHAGL+E+G  YF  M + Y + P IEH+
Sbjct: 351 YGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHY 410

Query: 440 ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
            C+VDL GRAG++++AY+ I  MP+ P   IW +L+ AC ++ N+ +     + +  L P
Sbjct: 411 GCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDP 470

Query: 500 NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQV 547
           N SG +VLLSNIYA AG+W DV  VR+ M  + + K PG S+   D++
Sbjct: 471 NNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKI 518


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 169/484 (34%), Positives = 263/484 (54%), Gaps = 38/484 (7%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+ +Y + G + D+R  FDE+ ++NVV +N +I  Y       +A  +++ M   G
Sbjct: 147 VGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQG 206

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
              D +T   +L ACS   +L  G  +H  ++  G   +L   N LV MYGKCG L  A 
Sbjct: 207 LLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAH 266

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
              + MP K+ V+W SM+   A+    D A                              
Sbjct: 267 TCFDMMPFKNAVSWTSMLCALAKRASIDAA------------------------------ 296

Query: 246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                  ++ F ++  K+++SWN MI+ Y       EA+DLY +M++ G+ P+  ++A+V
Sbjct: 297 -------RDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAV 349

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L ACG L  L  G+ IH  +      P + L N+L+DMYA+CG +  A ++F +M  ++V
Sbjct: 350 LSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNV 409

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           +SW ++I A  M G+  DA+  F  M+     PD I FV++LSAC+H GLLE G+YYF+ 
Sbjct: 410 ISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQA 469

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M   Y + P +EH+AC+VDLLGR G++ +A DLIK MPM P+  +WG+L+ AC ++ ++ 
Sbjct: 470 MRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQ 529

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMN 544
           IG      +  L     G +VL+SN+  +  +W D+KR+RK M   G+KK  G +S+E N
Sbjct: 530 IGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETN 589

Query: 545 DQVQ 548
             + 
Sbjct: 590 SNIH 593


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 186/531 (35%), Positives = 287/531 (54%), Gaps = 41/531 (7%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++ LK++HAQII + +     S    L         +   + +F  + N     +N LIR
Sbjct: 109 LRHLKQVHAQIITHHNSPFQLSALASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIR 168

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           +  ++    +AL +Y  M   G  PD  TYP V+KAC+ S+    GL +H  VVK G + 
Sbjct: 169 ALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFEC 228

Query: 164 N----------------------LFN---------GNGLVAMYGKCGCLKEARRVLNDMP 192
           +                      LFN          N ++  Y K   +  AR V + M 
Sbjct: 229 DSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMV 288

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA--SLLPSVTNTSPENVL 250
            +DV++WN+M+ GYA  G+ DEA  +  EM      P+ + ++  S+L         NV 
Sbjct: 289 CRDVISWNTMINGYAIVGKIDEAKRLFDEM------PERNLVSWNSMLAGFVKCG--NVE 340

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
               +F ++  +++VSWN M+A YA    P EA+ L+ QM   G++P   +V S+L AC 
Sbjct: 341 DAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACA 400

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
            L AL  G  +H Y+   +++ N  +  ALVDMYAKCG ++ A  VF+ M  +DV++W +
Sbjct: 401 HLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNT 460

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           +I+   + G   +A  LF +M  +G+ P+ I FV++LSACSHAG+++EG+     M+  Y
Sbjct: 461 IIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSY 520

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            + P++EH+ C++DLL RAG +EEA +LI  MPMEPN    G+L+  C ++ N ++G + 
Sbjct: 521 GIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMV 580

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
              + +L P  SG Y+LLSNIYA A +W D ++VR  M   GI K+PG SV
Sbjct: 581 GKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSV 631


>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 540

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 179/549 (32%), Positives = 304/549 (55%), Gaps = 59/549 (10%)

Query: 15  KPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTY 74
           K V++L L+ + TL      + ++++  +++ LKK H QI+ +  LH+     L + R  
Sbjct: 8   KTVESLSLTLRNTL------SRLIEQCKNLRELKKTHTQILKSPTLHTGDQYYL-ITRLL 60

Query: 75  GAC-----GQMVDTRHVFDEITNKNVVFFNVLIRSYV-----NNYLYYDALHVYKNMSVH 124
             C     G      +VF  I N ++  +N++IR+Y+     ++  +  AL +YK M   
Sbjct: 61  YVCSFSYYGSFSYATNVFHMIKNPDLRAYNIMIRAYISMESGDDTHFCKALMLYKQMFCK 120

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
              P+C T+P +LK C+       G  IH  V+K G   +++  N L+++Y   G L  A
Sbjct: 121 DIVPNCLTFPFLLKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNA 180

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           R+V ++M   DVVTWNSMV G  +NG  D A+D                           
Sbjct: 181 RKVFDEMLVTDVVTWNSMVIGCLRNGGLDMAMD--------------------------- 213

Query: 245 SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG---IEPNAIS 301
                     +F K++ +N+++WN +I   A      E+++L+ +M++     ++P+ I+
Sbjct: 214 ----------LFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPDKIT 263

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           +ASVL AC  L A+  G+ +H Y+ R  ++ ++ +  ALV+MY KCG + +A  +F++M 
Sbjct: 264 IASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYGKCGDVQKAFEIFEEMP 323

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            +D  +WT MIS + + G G+ A   F +M  +G+ P+ + FV +LSAC+H+GL+E+GR+
Sbjct: 324 EKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVTFVGLLSACAHSGLVEQGRW 383

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
            F +M   Y + P++ H+AC+VD+L RA   +E+  LI+ MPM+P+  +WG+L+  C ++
Sbjct: 384 CFDVMKRVYSIEPQVYHYACMVDILSRARLFDESEILIRSMPMKPDVYVWGALLGGCQMH 443

Query: 482 SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI-KKMPGAS 540
            N+++G     H+  L P+   +YV   +IYAKAG +   KR+R  M  K I KK+PG S
Sbjct: 444 GNVELGEKVVHHLIDLEPHNHAFYVNWCDIYAKAGMFDAAKRIRNIMKEKRIEKKIPGCS 503

Query: 541 -VEMNDQVQ 548
            +E+N +VQ
Sbjct: 504 MIEINGEVQ 512


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 183/510 (35%), Positives = 284/510 (55%), Gaps = 35/510 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDP 128
           L+  Y   G + D   VFD +  +++V +N ++  YV+N L   AL  ++ M        
Sbjct: 148 LVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQH 207

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D       L AC    S + G +IH  V++ GL+ ++  G  L+ MY KCG +  AR V 
Sbjct: 208 DSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVF 267

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS--- 245
             MP + VVTWN M+ GYA N R DEA D   +M +  ++ +  T  +LL +   T    
Sbjct: 268 ATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSL 327

Query: 246 ---------------PENVL---------------SVKEMFLKLDNKNLVSWNVMIAVYA 275
                          P  VL               S +++F K+ NK LVSWN MIA Y 
Sbjct: 328 YGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYM 387

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
              M  EA+ L+L++    + P+  ++++V+PA   L +L   R+IH Y+       N  
Sbjct: 388 YKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTL 447

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           + NA++ MYA+ G +  +R +FD+M  +DV+SW +MI  Y + GQG  A+ +F +M  +G
Sbjct: 448 IMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNG 507

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           L P+   FVSVL+ACS +GL++EG  +F +M ++Y ++P+IEH+ C+ DLLGR G + E 
Sbjct: 508 LQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREV 567

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
              I+ MP++P  R+WGSL+ A    +++DI   AA+ IF L  + +G Y++LS++YA A
Sbjct: 568 LQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADA 627

Query: 516 GRWGDVKRVRKFMNSKGIKKM-PGASVEMN 544
           GRW DV+RVR  M  KG+++  P + VE++
Sbjct: 628 GRWEDVERVRLLMKEKGLRRTEPISLVELH 657



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 144/537 (26%), Positives = 245/537 (45%), Gaps = 80/537 (14%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+ +  A G+M +       +   +    NV+IR + +  L   AL  Y+ M   G  PD
Sbjct: 47  LVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPD 106

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +T+P V+K C+    L  G   H  V+K+GL+++++  N LVA Y K G +++A RV +
Sbjct: 107 RFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFD 166

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPDADTMASLLPS-------- 240
            MP +D+VTWN+MV GY  NG    AL   +EM ++L ++ D+  + + L +        
Sbjct: 167 GMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEVSSM 226

Query: 241 --------VTNTSPENVLSV-----------------KEMFLKLDNKNLVSWNVMIAVYA 275
                   V     E  + V                 + +F  +  + +V+WN MI  YA
Sbjct: 227 QGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYA 286

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            N  P EA D ++QM   G++   ++  ++L AC    + L GR +H YV R++  P++ 
Sbjct: 287 LNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVV 346

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           LE AL++MY K G +  +  +F ++  + +VSW +MI+AY       +A+ LF ++L   
Sbjct: 347 LETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQP 406

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRY-------------------YFKIMTEQYKLVPRI 436
           L PD     +V+ A    G L   R                       +      +V   
Sbjct: 407 LYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASR 466

Query: 437 EHFACLVD--------------LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           E F  +V               + G+     E +D +K   ++PNE  + S++ AC +  
Sbjct: 467 EIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSG 526

Query: 483 NMDIGILAADHIFHLAPNQSG------YYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
            +D G +     F+L   + G      +Y  ++++    GR GD++ V +F+ S  I
Sbjct: 527 LVDEGWMH----FNLMLQEYGMIPQIEHYGCMTDLL---GREGDLREVLQFIESMPI 576



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 168/363 (46%), Gaps = 38/363 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H   +I   L  +  +G  L+  Y  CG++   R VF  +  + VV +N +I  Y  
Sbjct: 229 KEIHG-YVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYAL 287

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    +A   +  M   G   +  T   +L AC+ + S L G  +H  VV+     ++  
Sbjct: 288 NERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVL 347

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L+ MYGK G ++ + ++   + +K +V+WN+M+A Y     + EA+ +  E+ +  +
Sbjct: 348 ETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPL 407

Query: 228 KPDADTMASLLPSVT----------------------NT-----------SPENVLSVKE 254
            PD  TM++++P+                        NT              +V++ +E
Sbjct: 408 YPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASRE 467

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F K+ +K+++SWN MI  YA +     A++++ +M+ +G++PN  +  SVL AC  +S 
Sbjct: 468 IFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTAC-SVSG 526

Query: 315 LLLGRKIH--RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTSM 371
           L+    +H    ++   + P +     + D+  + G L E     + M        W S+
Sbjct: 527 LVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVWGSL 586

Query: 372 ISA 374
           ++A
Sbjct: 587 LTA 589



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 107/254 (42%), Gaps = 37/254 (14%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++  +++H+  II      N  I   ++  Y   G +V +R +FD++ +K+V+ +N +I 
Sbjct: 427 LRHCRQIHS-YIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIM 485

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            Y  +     AL ++  M  +G  P+  T+  VL ACS S  +  G           + +
Sbjct: 486 GYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGW----------MHF 535

Query: 164 NL-FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
           NL     G++      GC+ +                          GR  +  +V + +
Sbjct: 536 NLMLQEYGMIPQIEHYGCMTDLL------------------------GREGDLREVLQFI 571

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVLS-VKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
           ES+ I P +    SLL +  N +  ++     E   +L++ N   + V+ ++YA+     
Sbjct: 572 ESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWE 631

Query: 282 EAVDLYLQMEVHGI 295
           +   + L M+  G+
Sbjct: 632 DVERVRLLMKEKGL 645



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 6/149 (4%)

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
           +L P      +LV   A  G + EA      +R  D      MI  +  +G    A+A +
Sbjct: 36  RLPPKRGSSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAY 95

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC--LVDLL 446
             ML  G  PD   F  V+  C+  G L+EGR    ++    KL    + + C  LV   
Sbjct: 96  RGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVI---KLGLEHDVYTCNSLVAFY 152

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
            + G VE+A  +   MP+  +   W ++V
Sbjct: 153 AKLGLVEDAERVFDGMPVR-DIVTWNTMV 180


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 180/513 (35%), Positives = 275/513 (53%), Gaps = 34/513 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L   Y  C Q+ + R VFD +  +++V +N ++  Y  N +   AL +   M      P 
Sbjct: 176 LENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPS 235

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   VL A S    + +G +IH   ++ G D  +     LV MY KCG LK AR + +
Sbjct: 236 FITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFD 295

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP-DADTMASLLP--------- 239
            M  ++VV+WNSM+  Y QN    EA+ + ++M    +KP D   M +L           
Sbjct: 296 GMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLER 355

Query: 240 -----------------SVTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                            SV N+        + V +   MF KL ++ +VSWN MI  +A 
Sbjct: 356 GRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQ 415

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N  P EA++ + QM+   ++P+  +  SV+ A  +LS     + IH  V R  L  N+ +
Sbjct: 416 NGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFV 475

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
             ALVDMYAKCG++  AR +FD M  + V +W +MI  YG  G G  A+ LF +M    +
Sbjct: 476 TTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTI 535

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P+ + F+SV+SACSH+GL+E G   F +M E Y + P ++H+  +VDLLGRAG++ EA+
Sbjct: 536 RPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAW 595

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           D I QMP++P   ++G+++ AC ++ N++     A+ +F L P   GY+VLL+NIY  A 
Sbjct: 596 DFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAAS 655

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            W  V +VR  M  +G++K PG S VE+ ++V 
Sbjct: 656 MWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVH 688



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/505 (26%), Positives = 238/505 (47%), Gaps = 46/505 (9%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +L++   +K L+ +   +I    L+       KL+  +   G + +   VF+ I  K  V
Sbjct: 43  LLERCSSLKELRHI-LPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNV 101

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +  +++ +        AL  +  M     +P  Y +  +LK C     L VG +IH  +
Sbjct: 102 LYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLL 161

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           VK G   +LF   GL  MY KC  + EAR+V + MP +D+V+WN++VAGY+QNG    AL
Sbjct: 162 VKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMAL 221

Query: 217 DVCREMESLRIKPDADTMASLLPSVT------------------------NTSPE----- 247
           ++   M    +KP   T+ S+LP+V+                        N +       
Sbjct: 222 EMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMY 281

Query: 248 ----NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
               ++ + + +F  +  +N+VSWN MI  Y  N  P EA+ ++ +M   G++P  +SV 
Sbjct: 282 AKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVM 341

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
             L AC DL  L  GR IH+     +L  N+ + N+L+ MY KC  +  A ++F +++ +
Sbjct: 342 GALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSR 401

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
            +VSW +MI  +  +G+  +A+  FS+M    + PD+  +VSV++A +   +    ++  
Sbjct: 402 TIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIH 461

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV-------- 475
            ++     L   +     LVD+  + G +  A  LI  M  E +   W +++        
Sbjct: 462 GVVMRNC-LDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTHGI 519

Query: 476 --AACCLYSNMDIGILAADHIFHLA 498
             AA  L+  M  G +  + +  L+
Sbjct: 520 GKAALELFEEMQKGTIRPNGVTFLS 544



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 107/212 (50%), Gaps = 5/212 (2%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC D+     D++  + +H ++ +   L  N S+   L+  Y  C ++     +F ++ +
Sbjct: 346 ACADL----GDLERGRFIH-KLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQS 400

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           + +V +N +I  +  N    +AL+ +  M      PD +TY  V+ A +  +       I
Sbjct: 401 RTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWI 460

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  V++  LD N+F    LV MY KCG +  AR + + M  + V TWN+M+ GY  +G  
Sbjct: 461 HGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIG 520

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNT 244
             AL++  EM+   I+P+  T  S++ + +++
Sbjct: 521 KAALELFEEMQKGTIRPNGVTFLSVISACSHS 552



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 1/156 (0%)

Query: 54  IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
           +++   L  N  +   L+  Y  CG ++  R +FD ++ ++V  +N +I  Y  + +   
Sbjct: 463 VVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKA 522

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ-IHCSVVKVGLDYNLFNGNGLV 172
           AL +++ M      P+  T+  V+ ACS S  +  GL+  H       ++ ++ +   +V
Sbjct: 523 ALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMV 582

Query: 173 AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
            + G+ G L EA   +  MP K  V     + G  Q
Sbjct: 583 DLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQ 618


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 166/505 (32%), Positives = 272/505 (53%), Gaps = 40/505 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LHA++I       +P +   L+  Y  CG   + + VF+ + ++N V + VLI   + 
Sbjct: 290 KQLHAKVI-RSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQ 348

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
              +  ++ ++  M       D +    ++  C     L +G Q+H   +K G +  +  
Sbjct: 349 YECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVV 408

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+++Y KCG L+ A  V + M  +D+V+W SM+  Y+Q G                 
Sbjct: 409 SNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIG----------------- 451

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
                               N++  +E F  +D +N ++WN M+  Y  +    + + +Y
Sbjct: 452 --------------------NIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMY 491

Query: 288 LQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
             M     + P+ ++  ++   C D+ A  LG +I  +  +  L  N+ + NA + MY+K
Sbjct: 492 SAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSK 551

Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
           CG ++EA+ +FD +  +DVVSW +MI+ Y   G G  A   F  ML  G  PD I++V+V
Sbjct: 552 CGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAV 611

Query: 407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP 466
           LS CSH+GL++EG+ YF +MT  + + P +EHF+C+VDLLGRAG + EA DLI +MPM+P
Sbjct: 612 LSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKP 671

Query: 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526
              +WG+L++AC ++ N ++  LAA H+F L    SG Y+LL+ IY+ AG+  D  +VRK
Sbjct: 672 TAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRK 731

Query: 527 FMNSKGIKKMPGAS-VEMNDQVQII 550
            M  KGIKK PG S +E+ ++V + 
Sbjct: 732 LMRDKGIKKNPGYSWMEVENKVHVF 756



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 160/348 (45%), Gaps = 50/348 (14%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD-P 128
           +M  Y   G + D   +FD +  ++V  +N L+  Y     + D L  + +M   G   P
Sbjct: 77  MMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLP 136

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL-FNGN-----GLVAMYGKCGCLK 182
           + +T+ CV+K+C       +  Q+      +GL +   F G+      LV M+ +CG + 
Sbjct: 137 NAFTFCCVMKSCGALGCRELAPQL------LGLFWKFDFWGDPDVETALVDMFVRCGYVD 190

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
            A R+ + +    +   NSM+AGYA+    D A+                          
Sbjct: 191 FASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAI-------------------------- 224

Query: 243 NTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
                      E F  +  +++VSWN+MIA  + +    EA+ L ++M   G+  ++ + 
Sbjct: 225 -----------EYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTY 273

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            S L AC  L +L  G+++H  V R   Q +  + +AL+++YAKCGS  EA+ VF+ ++ 
Sbjct: 274 TSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQD 333

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
           ++ VSWT +I           +V LF++M    +  D  A  +++S C
Sbjct: 334 RNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 381



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 175/414 (42%), Gaps = 87/414 (21%)

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN-DMPSKD 195
           L++C    +L     +H  +V VGL   +F  N L+  Y  CG L +ARR+L  D+   +
Sbjct: 11  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPN 70

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM 255
           V+T N M+ GYA+ G   +A                                     +E+
Sbjct: 71  VITHNIMMNGYAKQGSLSDA-------------------------------------EEL 93

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE-PNAISVASVLPACGDLSA 314
           F ++  +++ SWN +++ Y       + ++ ++ M   G   PNA +   V+ +CG L  
Sbjct: 94  FDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGC 153

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ--------------- 359
             L  ++     +     +  +E ALVDM+ +CG +  A  +F Q               
Sbjct: 154 RELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAG 213

Query: 360 ----------------MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
                           M  +DVVSW  MI+A   SG+  +A+ L  +M   G+  DS  +
Sbjct: 214 YAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTY 273

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQ 461
            S L+AC+    L  G+   ++  +  + +P+I+ +  + L++L  + G  +EA  +   
Sbjct: 274 TSSLTACARLFSLGWGK---QLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNS 330

Query: 462 MPMEPNERIW-----GSLVAACC-----LYSNMDIGILAADHIFHLAPNQSGYY 505
           +  + N   W     GSL   C      L++ M   ++A D  F LA   SG +
Sbjct: 331 LQ-DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQ-FALATLISGCF 382



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 36/196 (18%)

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR------ 354
           ++A  L +CG   AL   R +H  +    L   + L+N L+  Y  CG+L++AR      
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRAD 65

Query: 355 --------------------------TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
                                      +FD+M  +DV SW +++S Y  + +  D +  F
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETF 125

Query: 389 SKMLMSG-LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE-QYKLVPRIEHFACLVDLL 446
             M  SG   P++  F  V+ +C   G  E       +  +  +   P +E    LVD+ 
Sbjct: 126 VSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVE--TALVDMF 183

Query: 447 GRAGKVEEAYDLIKQM 462
            R G V+ A  L  Q+
Sbjct: 184 VRCGYVDFASRLFSQI 199


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 177/527 (33%), Positives = 293/527 (55%), Gaps = 37/527 (7%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           +HAQI+I +   S+  +   L+  Y    ++ D+  VF+ +T  NVV +N +I  + +N 
Sbjct: 193 VHAQIVI-RGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSND 251

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
           LY DA  ++  M   G  PD  T+  V KA      +    ++    +++G+D N   G 
Sbjct: 252 LYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGT 311

Query: 170 GLVAMYGKCGCLKEARRVLND--MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            L+ M  KCG L+EAR + N   +  +    WN+M++GY ++G  ++AL++  +M    I
Sbjct: 312 ALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDI 371

Query: 228 KPDADTMASLLPS-----------------------VTNTSPENVLS-----------VK 253
             D  T  S+  +                       V   S  N ++           V+
Sbjct: 372 YLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVR 431

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           ++F ++++++L+SW  ++  Y+  S   +A++++  M   GI PN  + +SVL +C +L 
Sbjct: 432 KVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLC 491

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
            L  G+++H  + +  L  +  +E+ALVDMYAKCG L +A+ VF+++   D VSWT++I+
Sbjct: 492 LLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIA 551

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
            +   G   DA+ LF +M+  G+ P+++ F+ VL ACSH GL+EEG  YFK+M + Y LV
Sbjct: 552 GHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLV 611

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P +EH+AC+VDLL R G + +A + I +MP+EPNE +W +L+ AC ++ N+++G LAA  
Sbjct: 612 PEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQK 671

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           I       S  YVLLSN Y ++G + D   +R  M  +G+KK PG S
Sbjct: 672 ILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCS 718



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 120/464 (25%), Positives = 218/464 (46%), Gaps = 51/464 (10%)

Query: 51  HAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYL 110
           H+ +++N   H+           Y  C  +     +FD+++ +N   + VLI     N L
Sbjct: 103 HSLVLLNHVAHA-----------YSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGL 151

Query: 111 YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG 170
           + D    +  M   G  PD + Y  +L+ C G +S+ +G  +H  +V  G   + F    
Sbjct: 152 FLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTA 211

Query: 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
           L+ MY K   ++++ +V N M   +VV+WN+M+ G+  N  + +A D+   M    + PD
Sbjct: 212 LLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPD 271

Query: 231 ADT---MASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS--------------------- 266
           A T   +A  +  + + +    +S   + L +D+  LV                      
Sbjct: 272 AQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFN 331

Query: 267 -----------WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
                      WN MI+ Y  +    +A++L+ +M  + I  +  +  SV  A   L  L
Sbjct: 332 SHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCL 391

Query: 316 LLGRKIHRYVERKKLQPN-LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
            LG+K+H    +  L+ N + + NA+ + YAKCGSL + R VF++M  +D++SWTS+++A
Sbjct: 392 SLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTA 451

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE-QYKLV 433
           Y    +   A+ +FS M   G+ P+   F SVL +C++  LLE G+    I+ +    + 
Sbjct: 452 YSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMD 511

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             IE  + LVD+  + G + +A  +  ++    +   W +++A 
Sbjct: 512 KCIE--SALVDMYAKCGCLGDAKKVFNRIS-NADTVSWTAIIAG 552



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 169/344 (49%), Gaps = 36/344 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           KK+HA+ I +    +  SI   +   Y  CG + D R VF+ + +++++ +  L+ +Y  
Sbjct: 395 KKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQ 454

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
              +  A+ ++ NM   G  P+ +T+  VL +C+    L  G Q+H  + KVGLD +   
Sbjct: 455 CSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCI 514

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            + LV MY KCGCL +A++V N + + D V+W +++AG+AQ+G  D+AL + R M  L +
Sbjct: 515 ESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGV 574

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKN------LVSWNVMIAVYANNSMPA 281
           +P+A T   +L +    S   ++     + KL  K       +  +  ++ + +      
Sbjct: 575 EPNAVTFLCVLFAC---SHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLN 631

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP----NLRLE 337
           +A++   +M V   EPN +   ++L AC          ++H  VE  +L      + + E
Sbjct: 632 DAMEFISRMPV---EPNEMVWQTLLGAC----------RVHGNVELGELAAQKILSFKAE 678

Query: 338 NA-----LVDMYAKCGSLTEARTVFDQMRCQDV-----VSWTSM 371
           N+     L + Y + GS  +  ++   M+ Q V      SW S+
Sbjct: 679 NSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCSWISV 722



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 15/204 (7%)

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL--QPNL 334
           NS+  +  D +LQ     I+P    +  +L  C D   L   + +H ++ + K     +L
Sbjct: 55  NSVKVDKTDSHLQ-----IQP----LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSL 105

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            L N +   Y+KC  +  A  +FDQM  ++  SWT +I+    +G   D    F +M   
Sbjct: 106 VLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQ 165

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           G+ PD  A+  +L  C     +E G   + +I+   +     +     L+++  +  ++E
Sbjct: 166 GIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVS--TALLNMYAKLQEIE 223

Query: 454 EAYDLIKQMPMEPNERIWGSLVAA 477
           ++Y +   M  E N   W +++  
Sbjct: 224 DSYKVFNTMT-EVNVVSWNAMITG 246



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 114/252 (45%), Gaps = 9/252 (3%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++H  II    L  +  I   L+  Y  CG + D + VF+ I+N + V +  +I  +  
Sbjct: 497 QQVHG-IICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQ 555

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV-GLDYNLF 166
           + +  DAL +++ M   G +P+  T+ CVL ACS    +  GLQ    + K  GL   + 
Sbjct: 556 HGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEME 615

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           +   +V +  + G L +A   ++ MP + + + W +++     +G  +      +++ S 
Sbjct: 616 HYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSF 675

Query: 226 RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL--VSW----NVMIAVYANNSM 279
           + +  A  +      + + S ++ LS++ +  +   K     SW      +   YA +  
Sbjct: 676 KAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCSWISVNGTLHKFYAGDQQ 735

Query: 280 PAEAVDLYLQME 291
             E   +Y ++E
Sbjct: 736 HPEKDKIYAKLE 747


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 179/511 (35%), Positives = 272/511 (53%), Gaps = 35/511 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D   +K++H   I    + S+  +G  L+  YG C  +   R VFD++  K+VV +  + 
Sbjct: 147 DASRVKEVHDDAI-RCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMS 205

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             YVN  L    L V+  M  +G  P+  T   +L ACS    L  G  IH   V+ G+ 
Sbjct: 206 SCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMI 265

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            N+F  + LV++Y +C  +K+AR V + MP +DVV+WN ++  Y  N  +D+ L +  +M
Sbjct: 266 ENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQM 325

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
            S  ++ D  T                                 WN +I     N    +
Sbjct: 326 SSKGVEADEAT---------------------------------WNAVIGGCMENGQTEK 352

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           AV++  +M+  G +PN I+++S LPAC  L +L +G+++H YV R  L  +L    ALV 
Sbjct: 353 AVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVY 412

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MYAKCG L  +R VFD +  +DVV+W +MI A  M G G + + LF  ML SG+ P+S+ 
Sbjct: 413 MYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVT 472

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           F  VLS CSH+ L+EEG   F  M   + + P   H+AC+VD+  RAG++ EAY+ I++M
Sbjct: 473 FTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRM 532

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
           PMEP    WG+L+ AC +Y N+++  ++A+ +F + PN  G YV L NI   A  W +  
Sbjct: 533 PMEPTASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEAS 592

Query: 523 RVRKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
             R  M  +GI K PG S +++ D+V    +
Sbjct: 593 EARILMKERGITKTPGCSWLQVGDRVHTFVV 623



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 1/211 (0%)

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           +++F  +   +  + + +I+ +    +P EA+ LY  +   GI+P+     +V  ACG  
Sbjct: 86  QQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGAS 145

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
                 +++H    R  +  +  L NAL+  Y KC  +  AR VFD +  +DVVSWTSM 
Sbjct: 146 GDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMS 205

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           S Y   G     +A+F +M  +G+ P+S+   S+L ACS    L+ GR        ++ +
Sbjct: 206 SCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAV-RHGM 264

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           +  +   + LV L  R   V++A  +   MP
Sbjct: 265 IENVFVCSALVSLYARCLSVKQARLVFDLMP 295


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 167/478 (34%), Positives = 269/478 (56%), Gaps = 42/478 (8%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G +   R VF+E+  K  V +N +I  YV + +  DA  +++ M       D +T+  VL
Sbjct: 246 GDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVL 305

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDY----NLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
            AC+ +   + G  +H  ++++  ++     L   N LV +Y K G +  A+R+ + M  
Sbjct: 306 SACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNL 365

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK 253
           KDVV+WN++++GY  +G  D+A+                                     
Sbjct: 366 KDVVSWNTILSGYIDSGCLDKAV------------------------------------- 388

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           E+F  +  KN +SW VM++ Y +  +  +A+ L+ QM    ++P   + A  + ACG+L 
Sbjct: 389 EVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELG 448

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           AL  GR++H ++ +   + +    NAL+ MYAKCG++ +AR VF  M   D VSW +MIS
Sbjct: 449 ALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMIS 508

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
           A G  G G +A+ LF +M+  G+ PD I+F+++L+AC+HAGL++EG +YF+ M   + + 
Sbjct: 509 ALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGIS 568

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P  +H+A L+DLLGR+G++ EA DLIK MP EP   IW ++++ C    +M+ G  AAD 
Sbjct: 569 PGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQ 628

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           +F + P   G Y+LLSN Y+ AGRW D  RVRK M  +G+KK PG S +E+  ++ + 
Sbjct: 629 LFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVF 686



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 105/230 (45%), Gaps = 40/230 (17%)

Query: 48  KKLHAQIIINQHLHSN--PSIGL----KLMRTYGACGQMVDTRHVFDEITNKNVVFFN-- 99
           K +H QII    L  N  P   L     L+  Y   G++V  + +FD +  K+VV +N  
Sbjct: 318 KSVHGQII---RLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTI 374

Query: 100 -----------------------------VLIRSYVNNYLYYDALHVYKNMSVHGFDPDC 130
                                        V++  YV+  L  DAL ++  M      P  
Sbjct: 375 LSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCD 434

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
           YTY   + AC    +L  G Q+H  +V+ G + +   GN L+ MY KCG + +AR V   
Sbjct: 435 YTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLV 494

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           MP+ D V+WN+M++   Q+G   EAL++  +M +  I PD  +  ++L +
Sbjct: 495 MPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTA 544



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 136/316 (43%), Gaps = 50/316 (15%)

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGR- 319
           ++ V  N M++ +A  S+ A AV ++  +   G + P+  S  +++ A G +  L     
Sbjct: 123 RDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHC 182

Query: 320 -KIHRYVERKKLQPNLRLENALVDMYAKC------------------------------- 347
            ++H  V +      L + NAL+ +Y KC                               
Sbjct: 183 TQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGY 242

Query: 348 ---GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404
              G +  AR+VF+++  +  V W +MIS Y  SG   DA  LF +M+   +  D   F 
Sbjct: 243 VRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFT 302

Query: 405 SVLSACSHAGLLEEGR-YYFKIMTEQYKLVPR--IEHFACLVDLLGRAGKVEEAYDLIKQ 461
           SVLSAC++AG    G+  + +I+  Q   VP   +     LV L  + GK+  A  +   
Sbjct: 303 SVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDT 362

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGIL-AADHIFHLAP--NQSGYYVLLSNIYAKAGRW 518
           M ++ +   W ++     L   +D G L  A  +F + P  N   + V++S  Y   G  
Sbjct: 363 MNLK-DVVSWNTI-----LSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSG-YVHGGLS 415

Query: 519 GDVKRVRKFMNSKGIK 534
            D  ++   M ++ +K
Sbjct: 416 EDALKLFNQMRAEDVK 431



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 9/172 (5%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +K  ++LHA ++      SN S G  L+  Y  CG + D R VF  + N + V +N +I 
Sbjct: 450 LKHGRQLHAHLVQCGFEASN-SAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMIS 508

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           +   +    +AL ++  M   G DPD  ++  +L AC+ +  +  G     S+ +   D+
Sbjct: 509 ALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKR---DF 565

Query: 164 NLFNGNG----LVAMYGKCGCLKEARRVLNDMPSKDVVT-WNSMVAGYAQNG 210
            +  G      L+ + G+ G + EAR ++  MP +   + W ++++G   NG
Sbjct: 566 GISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNG 617


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 179/552 (32%), Positives = 296/552 (53%), Gaps = 42/552 (7%)

Query: 28  LLSGDACNDILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLK--LMRTYGACGQMVD 82
           L   +A   ++  Y   K L   K+LHA +I   +    P   L   L+  Y  CG++  
Sbjct: 2   LRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGY---TPCTFLTNHLVNMYSKCGELDH 58

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
              +FD +  +N+V +  +I     N  + +A+  +  M + G  P  + +   ++AC+ 
Sbjct: 59  ALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACAS 118

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
             S+ +G Q+HC  +K G+   LF G+ L  MY KCG + +A +V  +MP KD V+W +M
Sbjct: 119 LGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAM 178

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL----------------PSVTNTSP 246
           + GY++ G F+EAL   ++M    +  D   + S L                 SV     
Sbjct: 179 IDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGF 238

Query: 247 ENVL----SVKEMFLKLDN--------------KNLVSWNVMIAVYANNSMPAEAVDLYL 288
           E+ +    ++ +M+ K  +              +N+VS+  +I  Y       + + +++
Sbjct: 239 ESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFV 298

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           ++   GIEPN  + +S++ AC + +AL  G ++H  V +     +  + + LVDMY KCG
Sbjct: 299 ELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCG 358

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
            L +A   FD++     ++W S++S +G  G G DA+ +F +M+  G+ P++I F+S+L+
Sbjct: 359 LLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLT 418

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
            CSHAGL+EEG  YF  M + Y +VP  EH++C++DLLGRAG+++EA + I +MP EPN 
Sbjct: 419 GCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNA 478

Query: 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
             W S + AC ++ + ++G LAA+ +  L P  SG  VLLSNIYA   +W DV+ VR  M
Sbjct: 479 FGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRM 538

Query: 529 NSKGIKKMPGAS 540
               +KK+PG S
Sbjct: 539 RDGNVKKLPGYS 550


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 183/542 (33%), Positives = 309/542 (57%), Gaps = 35/542 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+ +  +LH+ + +   L    ++   L+  Y  C  + D   +F+ +   ++V +N +I
Sbjct: 257 DLLSGVQLHS-LAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMI 315

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
              V N L  +AL ++ +M   G  PD  T   +L A +  N L  G ++H  +++  + 
Sbjct: 316 SGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVH 375

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            + F  + LV +Y KC  ++ AR + +   + DVV  +++++GY  NG  ++AL + R +
Sbjct: 376 MDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYL 435

Query: 223 ESLRIKPDADTMASLLPSVTNTSP----------------ENVLSVKE------------ 254
               IKP+A T+AS+LP+  + S                 E    V+             
Sbjct: 436 LEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRL 495

Query: 255 -----MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                +F K+  K+ V+WN MI+ ++ N  P EA+DL+ QM + GI+ N ++++S L AC
Sbjct: 496 DLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSAC 555

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L A+  G++IH  + +  ++ ++  E+AL+DMYAKCG++  A  VF+ M  ++ VSW 
Sbjct: 556 ASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWN 615

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           S+ISAYG  G   ++V+   +M   G  PD + F++++SAC+HAGL+EEG   F+ MT++
Sbjct: 616 SIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKE 675

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y + PR+EHFAC+VDL  R+G++++A   I  MP +P+  IWG+L+ AC ++ N+++  +
Sbjct: 676 YLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADI 735

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           A+  +F L P  SGYYVL+SNI A AGRW  V +VR+ M    I K+PG S V++N+   
Sbjct: 736 ASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSSH 795

Query: 549 II 550
           + 
Sbjct: 796 LF 797



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/451 (31%), Positives = 241/451 (53%), Gaps = 35/451 (7%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
           L S+  +G  L++ Y   G + D R  FD +  ++ V +NV++  Y+       A+ +++
Sbjct: 172 LASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFR 231

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
           NM V G +P+  T  C L  C+    LL G+Q+H   VK GL+  +   N L++MY KC 
Sbjct: 232 NMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCR 291

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
           CL +A R+   +P  D+VTWN M++G  QNG  DEAL +  +M     +PD+ T+ SLLP
Sbjct: 292 CLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLP 351

Query: 240 SVTNTSP---------------------------------ENVLSVKEMFLKLDNKNLVS 266
           ++T+ +                                   +V + + ++      ++V 
Sbjct: 352 ALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVI 411

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
            + +I+ Y  N M  +A+ ++  +    I+PNA++VASVLPAC  +SAL LG++IH YV 
Sbjct: 412 GSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVL 471

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           R   +    +E+AL+DMYAKCG L  +  +F +M  +D V+W SMIS++  +G+  +A+ 
Sbjct: 472 RNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALD 531

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           LF +M M G+  +++   S LSAC+    +  G+    ++ +   +   I   + L+D+ 
Sbjct: 532 LFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKG-PIKADIFAESALIDMY 590

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            + G +E A  + + MP + NE  W S+++A
Sbjct: 591 AKCGNMELALRVFEFMP-DKNEVSWNSIISA 620



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 235/478 (49%), Gaps = 46/478 (9%)

Query: 42  PDIKTLKKLHAQIIINQHL--HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK---NVV 96
           P +    ++HA+ +++  L  H++ ++  +L+  Y    +  D   VF  +      + +
Sbjct: 46  PHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAGSSL 105

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVH--GFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
            +N LIR +     +  A+  Y  M  H     PD +T P V+K+C+   ++ +G  +H 
Sbjct: 106 PWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHR 165

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
           +    GL  +++ G+ L+ MY   G L++AR   + MP +D V WN M+ GY + G    
Sbjct: 166 TARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGG 225

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPE-------NVLSVK-------------- 253
           A+ + R M     +P+  T+A  L SV     +       + L+VK              
Sbjct: 226 AVRLFRNMRVSGCEPNFATLACFL-SVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLL 284

Query: 254 -------------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                         +F  L   +LV+WN MI+    N +  EA+ L+  M   G  P+++
Sbjct: 285 SMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSV 344

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           ++ S+LPA  DL+ L  G+++H Y+ R  +  +  L +ALVD+Y KC  +  AR ++D  
Sbjct: 345 TLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAA 404

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           R  DVV  +++IS Y ++G    A+ +F  +L   + P+++   SVL AC+    L  G+
Sbjct: 405 RAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQ 464

Query: 421 -YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             +  ++   Y+    +E  + L+D+  + G+++ ++ +  +M ++ +E  W S++++
Sbjct: 465 EIHGYVLRNAYEGKCYVE--SALMDMYAKCGRLDLSHYIFSKMSLK-DEVTWNSMISS 519



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 4/214 (1%)

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVH--GIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           WN +I  +      + AV  Y++M  H     P+A ++  V+ +C  L A+ LGR +HR 
Sbjct: 107 WNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRT 166

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
                L  ++ + +AL+ MY+  G L +AR  FD M  +D V W  M+  Y  +G    A
Sbjct: 167 ARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGA 226

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           V LF  M +SG  P+       LS C+    L  G      +  +  L   +     L+ 
Sbjct: 227 VRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSG-VQLHSLAVKCGLEQEVAVANTLLS 285

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           +  +   +++A+ L + +P + +   W  +++ C
Sbjct: 286 MYAKCRCLDDAWRLFELLPRD-DLVTWNGMISGC 318


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 178/537 (33%), Positives = 302/537 (56%), Gaps = 35/537 (6%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +LH  ++I      +P +   L+  Y  CG ++  R +F+ +   + V +N LI  YV N
Sbjct: 234 QLHG-LVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQN 292

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
               +A  ++  M   G  PD  T+   L +   S SL    ++H  +V+  + ++++  
Sbjct: 293 GFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLK 352

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           + L+ +Y K G ++ AR++       DV    +M++GY  +G   +A++  R +    + 
Sbjct: 353 SALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMV 412

Query: 229 PDADTMASLLPSVTNTSP----------------ENVLSVK-----------------EM 255
            ++ TMAS+LP+    +                 EN+++V                  E 
Sbjct: 413 TNSLTMASVLPACAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEF 472

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F ++ +++ V WN MI+ ++ N  P  A+DL+ QM + G + +++S++S L A  +L AL
Sbjct: 473 FRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPAL 532

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             G+++H YV R     +  + + L+DMY+KCG+L  A  VF+ M  ++ VSW S+I+AY
Sbjct: 533 YYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAY 592

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
           G  G   + + L+ +ML +G+ PD + F+ ++SAC HAGL++EG +YF  MT +Y +  R
Sbjct: 593 GNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGAR 652

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
           +EH+AC+VDL GRAG+V EA+D IK MP  P+  +WG+L+ AC L+ N+++  LA+ H+ 
Sbjct: 653 MEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLL 712

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIA 551
            L P  SGYYVLLSN++A AG W  V +VR  M  KG++K+PG S +++N    + +
Sbjct: 713 ELDPKNSGYYVLLSNVHADAGEWASVLKVRSLMKEKGVQKIPGYSWIDVNGGTHMFS 769



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 162/582 (27%), Positives = 269/582 (46%), Gaps = 81/582 (13%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
            H +   G  L++ Y   G + D R VFDE+  ++ + +NV++R YV +  + +A+  + 
Sbjct: 143 FHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFC 202

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M       +  TY C+L  C+   +   G Q+H  V+  G +++    N LVAMY KCG
Sbjct: 203 EMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCG 262

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
            L  AR++ N MP  D VTWN ++AGY QNG  DEA  +   M S  +KPD+ T AS LP
Sbjct: 263 NLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLP 322

Query: 240 SVTNTS-----------------PENVLSVK------------EMFLKLDNKNLV----S 266
           S+  +                  P +V                EM  K+  +N++     
Sbjct: 323 SILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAV 382

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
              MI+ Y  + +  +A++ +  +   G+  N++++ASVLPAC  ++AL  G+++H ++ 
Sbjct: 383 CTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHIL 442

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           +K+L+  + + +A+ DMYAKCG L  A   F +M  +D V W SMIS++  +G+   A+ 
Sbjct: 443 KKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAID 502

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR---------------YYFKIMTEQYK 431
           LF +M MSG   DS++  S LSA ++   L  G+               +    + + Y 
Sbjct: 503 LFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMYS 562

Query: 432 LVPRIEHFACLVDLL---------------GRAGKVEEAYDLIKQM---PMEPNERIWGS 473
               +    C+ +L+               G  G   E  DL  +M    + P+   +  
Sbjct: 563 KCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLV 622

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSG------YYVLLSNIYAKAGRWG---DVKRV 524
           +++AC     +D GI    H FH    + G      +Y  + ++Y +AGR     D  + 
Sbjct: 623 IISACGHAGLVDEGI----HYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKS 678

Query: 525 RKFMNSKGIKKMPGASVEMNDQVQIIALPLRSSKCLTTGPKN 566
             F    G+      +  ++  V++  L  R    L   PKN
Sbjct: 679 MPFTPDAGVWGTLLGACRLHGNVELAKLASR--HLLELDPKN 718



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 130/498 (26%), Positives = 248/498 (49%), Gaps = 43/498 (8%)

Query: 14  TKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRT 73
            KP     L+TQ   L   AC+D       ++  +++H Q+I+   +    +   +++  
Sbjct: 2   AKPETLDSLTTQLESLF-RACSDA----SMVQQARQVHTQVIVGG-MGDVCAPSSRVLGL 55

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y  CG+  D  ++F E+  +  + +N +IR       +  AL  Y  M      PD YT+
Sbjct: 56  YVLCGRFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTF 115

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
           P V+KAC G N++ + + +H +   +G   +LF G+ L+ +Y   G +++ARRV +++P 
Sbjct: 116 PYVIKACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPL 175

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL--------------- 238
           +D + WN M+ GY ++G FD A+    EM +     ++ T   +L               
Sbjct: 176 RDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQL 235

Query: 239 ------------PSVTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                       P V NT         N+L  +++F  +   + V+WN +IA Y  N   
Sbjct: 236 HGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFT 295

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            EA  L+  M   G++P++++ AS LP+  +  +L   +++H Y+ R ++  ++ L++AL
Sbjct: 296 DEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSAL 355

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +D+Y K G +  AR +F Q    DV   T+MIS Y + G   DA+  F  ++  G+  +S
Sbjct: 356 IDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNS 415

Query: 401 IAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
           +   SVL AC+    L+ G+  +  I+ ++ + +  +   + + D+  + G+++ AY+  
Sbjct: 416 LTMASVLPACAAVAALKPGKELHCHILKKRLENIVNVG--SAITDMYAKCGRLDLAYEFF 473

Query: 460 KQMPMEPNERIWGSLVAA 477
           ++M  + +   W S++++
Sbjct: 474 RRMS-DRDSVCWNSMISS 490


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 169/485 (34%), Positives = 267/485 (55%), Gaps = 39/485 (8%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEIT-NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
           +G  L+ +  + G + D+R +F E+  ++NVV +N +I          +A  +++ M   
Sbjct: 144 VGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQ 203

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G   D +T+  +L  CS   +L VG  +HC ++  G   +L  GN LV MYGKCG L  A
Sbjct: 204 GVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMA 263

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
            R  + MP K+VV+W SM+   A++G  D A                             
Sbjct: 264 HRCFDVMPIKNVVSWTSMLCALAKHGSVDAA----------------------------- 294

Query: 245 SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
                   ++ F ++  +N++SWN MI+ Y       E + LY +M+  G+ P+ +++A 
Sbjct: 295 --------RDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAG 346

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           VL   G    L  GR IH Y++     P + + N+L+DMYA+CG +  + ++F +M  ++
Sbjct: 347 VLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKN 406

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
            +SW  +I A  M G+  +AV  F  M+     PD I FV +LSACSH GLLE+G+YYFK
Sbjct: 407 TISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFK 466

Query: 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNM 484
            M   Y + P +EH+AC+VDLLGR G + +A DLIK MPM+P+  +WG+L+ AC ++ ++
Sbjct: 467 AMRHIYNVKPEVEHYACMVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHV 526

Query: 485 DIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEM 543
           +IG LA   +  L     G +VL+SN+  +  +W D+KR+RK M  +G KK  G +S+E+
Sbjct: 527 EIGKLAIKQLLELEGINGGLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVSSIEI 586

Query: 544 NDQVQ 548
           N+ + 
Sbjct: 587 NNSIH 591


>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
 gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 197/534 (36%), Positives = 296/534 (55%), Gaps = 20/534 (3%)

Query: 24  TQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHL-HSNPSIGLKLMRTYGACGQMVD 82
           T   LL+ ++C  +L        LK++ A +     + H+ P   +         G +  
Sbjct: 50  THPILLAMESCTSMLQ-------LKQIQAHMTKTALISHTFPVSRVLAFCALSDSGDINH 102

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
              +F ++ N N   +N +IR Y    +       +  M   G + DC ++   LKAC  
Sbjct: 103 AHLLFSQLQNPNTYIWNTMIRGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQ 162

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
              +L G  +HC V K+G  Y L   NGLV  YG  GCL  AR V +++  +DVV+W SM
Sbjct: 163 FLGVLEGKSVHCVVWKMGFVYTLLVQNGLVHFYGLRGCLGLARLVFDEISERDVVSWTSM 222

Query: 203 VAGYAQNGRFDEALDVCREMESLRI-KPDADTMASLLPSVTNTSPENVLSVKEMFLK-LD 260
           + GY+++   DEAL +   M    + +P+  TM ++L S    S +  L + + FL+ + 
Sbjct: 223 IDGYSKHKWCDEALKLFDSMLMYGVVEPNEVTMIAVLSSC---SQKGDLILGKTFLEYVK 279

Query: 261 NKNLV-SWNVMIAV---YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
            +N+  S N+M A+   Y        A +++  M      P   ++A VLP CG L  L 
Sbjct: 280 TRNVTRSLNLMNAILDMYVKCGCLDSAREIFDTMGA-AFAPMENTLACVLPVCGQLGCLD 338

Query: 317 LGRKIHR-YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
           +G+ IHR YV  +  + ++ L NAL+DMYAKCG + EA  VF+ M  +++VSW SMI+AY
Sbjct: 339 VGQWIHRNYVRMRYNEISVILANALIDMYAKCGVIHEAAKVFNDMPERNLVSWNSMITAY 398

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
              G    A+++F +M+  G  PD I  V VLSACSH GL+ EG+ YF+ M  +Y + P+
Sbjct: 399 ASHGHAKQALSVFERMISGGFKPDDITLVGVLSACSHGGLVAEGQEYFQNMKRKYGIEPK 458

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
            EH+AC++DLLGR G +E+AY+LI +MPMEP+   WG+LV AC ++ N+++  +AA  + 
Sbjct: 459 NEHYACMIDLLGRVGLLEDAYELITKMPMEPSAAAWGALVHACRMHGNVEVAKIAAPRLL 518

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            L P  SG YVLL+NI A   RWGDVK  R+ M  + +KK+PG S VE+  Q  
Sbjct: 519 ELDPEDSGIYVLLANICASGRRWGDVKMARRMMRERRVKKIPGRSIVEVEGQFH 572


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 169/484 (34%), Positives = 263/484 (54%), Gaps = 38/484 (7%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+ +Y + G + D+R  FDE+ ++NVV +N +I  Y       +A  +++ M   G
Sbjct: 147 VGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQG 206

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
              D +T   +L ACS   +L  G  +H  ++  G   +L   N LV MYGKCG L  A 
Sbjct: 207 LLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAH 266

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
              + MP K+ V+W SM+   A+    D A                              
Sbjct: 267 TCFDMMPFKNAVSWTSMLCALAKRASIDAA------------------------------ 296

Query: 246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                  ++ F ++  K+++SWN MI+ Y       EA+DLY +M++ G+ P+  ++A+V
Sbjct: 297 -------RDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAV 349

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L ACG L  L  G+ IH  +      P + L N+L+DMYA+CG +  A ++F +M  ++V
Sbjct: 350 LSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNV 409

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           +SW ++I A  M G+  DA+  F  M+     PD I FV++LSAC+H GLLE G+YYF+ 
Sbjct: 410 ISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQA 469

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M   Y + P +EH+AC+VDLLGR G++ +A DLIK MPM P+  +WG+L+ AC ++ ++ 
Sbjct: 470 MRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQ 529

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMN 544
           IG      +  L     G +VL+SN+  +  +W D+KR+RK M   G+KK  G +S+E N
Sbjct: 530 IGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETN 589

Query: 545 DQVQ 548
             + 
Sbjct: 590 SNIH 593


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 177/527 (33%), Positives = 293/527 (55%), Gaps = 37/527 (7%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           +HAQI+I +   S+  +   L+  Y    ++ D+  VF+ +T  NVV +N +I  + +N 
Sbjct: 193 VHAQIVI-RGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSND 251

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
           LY DA  ++  M   G  PD  T+  V KA      +    ++    +++G+D N   G 
Sbjct: 252 LYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGT 311

Query: 170 GLVAMYGKCGCLKEARRVLND--MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            L+ M  KCG L+EAR + N   +  +    WN+M++GY ++G  ++AL++  +M    I
Sbjct: 312 ALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDI 371

Query: 228 KPDADTMASLLPS-----------------------VTNTSPENVLS-----------VK 253
             D  T  S+  +                       V   S  N ++           V+
Sbjct: 372 YLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVR 431

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           ++F ++++++L+SW  ++  Y+  S   +A++++  M   GI PN  + +SVL +C +L 
Sbjct: 432 KVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLC 491

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
            L  G+++H  + +  L  +  +E+ALVDMYAKCG L +A+ VF+++   D VSWT++I+
Sbjct: 492 LLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIA 551

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
            +   G   DA+ LF +M+  G+ P+++ F+ VL ACSH GL+EEG  YFK+M + Y LV
Sbjct: 552 GHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLV 611

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P +EH+AC+VDLL R G + +A + I +MP+EPNE +W +L+ AC ++ N+++G LAA  
Sbjct: 612 PEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQK 671

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           I       S  YVLLSN Y ++G + D   +R  M  +G+KK PG S
Sbjct: 672 ILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCS 718



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 120/464 (25%), Positives = 218/464 (46%), Gaps = 51/464 (10%)

Query: 51  HAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYL 110
           H+ +++N   H+           Y  C  +     +FD+++ +N   + VLI     N L
Sbjct: 103 HSLVLLNHVAHA-----------YSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGL 151

Query: 111 YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG 170
           + D    +  M   G  PD + Y  +L+ C G +S+ +G  +H  +V  G   + F    
Sbjct: 152 FLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTA 211

Query: 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
           L+ MY K   ++++ +V N M   +VV+WN+M+ G+  N  + +A D+   M    + PD
Sbjct: 212 LLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPD 271

Query: 231 ADT---MASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS--------------------- 266
           A T   +A  +  + + +    +S   + L +D+  LV                      
Sbjct: 272 AQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFN 331

Query: 267 -----------WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
                      WN MI+ Y  +    +A++L+ +M  + I  +  +  SV  A   L  L
Sbjct: 332 SHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCL 391

Query: 316 LLGRKIHRYVERKKLQPN-LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
            LG+K+H    +  L+ N + + NA+ + YAKCGSL + R VF++M  +D++SWTS+++A
Sbjct: 392 SLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTA 451

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE-QYKLV 433
           Y    +   A+ +FS M   G+ P+   F SVL +C++  LLE G+    I+ +    + 
Sbjct: 452 YSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMD 511

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             IE  + LVD+  + G + +A  +  ++    +   W +++A 
Sbjct: 512 KCIE--SALVDMYAKCGCLGDAKKVFNRIS-NADTVSWTAIIAG 552



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 169/344 (49%), Gaps = 36/344 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           KK+HA+ I +    +  SI   +   Y  CG + D R VF+ + +++++ +  L+ +Y  
Sbjct: 395 KKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQ 454

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
              +  A+ ++ NM   G  P+ +T+  VL +C+    L  G Q+H  + KVGLD +   
Sbjct: 455 CSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCI 514

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            + LV MY KCGCL +A++V N + + D V+W +++AG+AQ+G  D+AL + R M  L +
Sbjct: 515 ESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGV 574

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKN------LVSWNVMIAVYANNSMPA 281
           +P+A T   +L +    S   ++     + KL  K       +  +  ++ + +      
Sbjct: 575 EPNAVTFLCVLFAC---SHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLN 631

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP----NLRLE 337
           +A++   +M V   EPN +   ++L AC          ++H  VE  +L      + + E
Sbjct: 632 DAMEFISRMPV---EPNEMVWQTLLGAC----------RVHGNVELGELAAQKILSFKAE 678

Query: 338 NA-----LVDMYAKCGSLTEARTVFDQMRCQDV-----VSWTSM 371
           N+     L + Y + GS  +  ++   M+ Q V      SW S+
Sbjct: 679 NSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCSWISV 722



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 15/204 (7%)

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL--QPNL 334
           NS+  +  D +LQ     I+P    +  +L  C D   L   + +H ++ + K     +L
Sbjct: 55  NSVKVDKTDSHLQ-----IQP----LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSL 105

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            L N +   Y+KC  +  A  +FDQM  ++  SWT +I+    +G   D    F +M   
Sbjct: 106 VLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQ 165

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           G+ PD  A+  +L  C     +E G   + +I+   +     +     L+++  +  ++E
Sbjct: 166 GIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVS--TALLNMYAKLQEIE 223

Query: 454 EAYDLIKQMPMEPNERIWGSLVAA 477
           ++Y +   M  E N   W +++  
Sbjct: 224 DSYKVFNTMT-EVNVVSWNAMITG 246


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 177/539 (32%), Positives = 293/539 (54%), Gaps = 37/539 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +K+H  +++      +  I    +  Y   G +    ++FD +  +++  +N +I  +  
Sbjct: 159 RKVHC-LVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYL 217

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    +AL V+  M       D  T   +L  C   + ++ G+ IH   +K+GL+++LF 
Sbjct: 218 NGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFV 277

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY K G L+ A  + N M  +D+V+WNS++A + QN +   AL V  +M S+ +
Sbjct: 278 CNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGV 337

Query: 228 KPDADTMASLLPSVT-----------------------NTSPENVL-----------SVK 253
            PD  T+ SL                            + +  N +           S +
Sbjct: 338 VPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSAR 397

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVASVLPACGDL 312
           ++F  L  K+++SWN +I  Y+ N +  EA+D+Y  M  + G  PN  +  S+L A   L
Sbjct: 398 KVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQL 457

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
            AL  G K H  + +  L  ++ +   LVDMY KCG L +A ++F ++  Q  VSW ++I
Sbjct: 458 GALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAII 517

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           S +G+ G G  AV LF +M   G+ PD I FVS+LSACSH+GL++EG++ F++M E Y +
Sbjct: 518 SCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGI 577

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAAD 492
            P ++H+ C+VDL GRAG +E+A++ +K MP+ P+  +WG+L+ AC ++ N+++    +D
Sbjct: 578 RPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSD 637

Query: 493 HIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQII 550
           H+  +     GYYVLLSNIYAK G W  V  VR     +G+KK PG +S+E++ ++ + 
Sbjct: 638 HLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVF 696



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 135/498 (27%), Positives = 248/498 (49%), Gaps = 62/498 (12%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LHA ++++    S   +  KL+  Y   G +   R  FD+I  K+V  +N +I +Y  
Sbjct: 60  KQLHALLVVSGKTQS-IFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYAR 118

Query: 108 NYLYYDALHVYKN-MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
              ++ A+  +   +S      D YT+P V++AC   +    G ++HC V+K+G + +++
Sbjct: 119 IGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVLKLGFECDVY 175

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
                +  Y + G +  A  + ++M  +D+ TWN+M++G+  NG+  EAL+V  EM    
Sbjct: 176 IAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKS 235

Query: 227 IKPDADTMASLLP-------------------------------SVTNTSPE--NVLSVK 253
           +  D+ T++SLLP                               ++ N   +   + S +
Sbjct: 236 VSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAE 295

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
            +F ++  +++VSWN ++A +  N  P  A+ +Y +M   G+ P+ +++ S+     +L 
Sbjct: 296 TIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELG 355

Query: 314 ALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
             L  R IH +V R+     ++ L NA++DMYAK G +  AR VF+ +  +DV+SW S+I
Sbjct: 356 NFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLI 415

Query: 373 SAYGMSGQGYDAVALFSKM-LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           + Y  +G   +A+ ++S M   SG  P+   +VS+L+A S  G L++G      M    +
Sbjct: 416 TGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQG------MKAHGQ 469

Query: 432 LVPRIEHF-----ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA---------- 476
           L+    +F      CLVD+ G+ GK+ +A  L  ++P + +   W ++++          
Sbjct: 470 LIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVS-WNAIISCHGLHGYGLK 528

Query: 477 ACCLYSNMDIGILAADHI 494
           A  L+  M    +  DHI
Sbjct: 529 AVKLFKEMQSEGVKPDHI 546



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 100/206 (48%), Gaps = 14/206 (6%)

Query: 37  ILDKYPDIKTLK---KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
           IL  +  +  LK   K H Q+I N  L+ +  +   L+  YG CG++ D   +F E+ ++
Sbjct: 450 ILTAHSQLGALKQGMKAHGQLIKN-FLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQ 508

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           + V +N +I  +  +     A+ ++K M   G  PD  T+  +L ACS S   LV     
Sbjct: 509 SSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSG--LVDEGQW 566

Query: 154 CSVV---KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQN 209
           C  +     G+  +L +   +V ++G+ G L++A   + +MP + DV  W +++      
Sbjct: 567 CFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGA---- 622

Query: 210 GRFDEALDVCREMESLRIKPDADTMA 235
            R  E +++ R +    +K +++ + 
Sbjct: 623 CRIHENVELVRTVSDHLLKVESENVG 648



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 10/164 (6%)

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
           L +++H  +       ++ L   L++ YA  G +  AR  FDQ++ +DV +W SMISAY 
Sbjct: 58  LAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYA 117

Query: 377 MSGQGYDAVALFSKML-MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
             G  + AV  F++ L  S L  D   F  V+ AC   G L++GR   K+     KL   
Sbjct: 118 RIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGR---KVHCLVLKLGFE 171

Query: 436 IEHF--ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            + +  A  +    R G V  A +L   M M  +   W ++++ 
Sbjct: 172 CDVYIAASFIHFYSRFGFVSLACNLFDNM-MIRDIGTWNAMISG 214


>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Glycine max]
          Length = 512

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 166/467 (35%), Positives = 273/467 (58%), Gaps = 41/467 (8%)

Query: 94  NVVFFNVLIRSYVNNYLY-YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
            +  +N LI++Y ++  + +    +Y  M +H F P+ +T+  +  AC+  +S  +G  +
Sbjct: 46  TLFLYNKLIQAYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQML 105

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H   +K G + +LF    L+ MY K G L+ AR++ + MP + V TWN+M+AG+A+ G  
Sbjct: 106 HTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDM 165

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIA 272
           D AL++ R                L+PS                     +N+VSW  MI+
Sbjct: 166 DVALELFR----------------LMPS---------------------RNVVSWTTMIS 188

Query: 273 VYANNSMPAEAVDLYLQMEVH-GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
            Y+ +    EA+ L+L+ME   G+ PNA+++AS+ PA  +L AL +G+++  Y  +    
Sbjct: 189 GYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRVEAYARKNGFF 248

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQM-RCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
            NL + NA+++MYAKCG +  A  VF+++   +++ SW SMI    + G+    + L+ +
Sbjct: 249 KNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQ 308

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450
           ML  G  PD + FV +L AC+H G++E+GR+ FK MT  + ++P++EH+ C+VDLLGRAG
Sbjct: 309 MLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRAG 368

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSN 510
           ++ EAY++I++MPM+P+  IWG+L+ AC  + N+++  +AA+ +F L P   G YV+LSN
Sbjct: 369 QLREAYEVIQRMPMKPDSVIWGALLGACSFHDNVELAEIAAESLFALEPWNPGNYVILSN 428

Query: 511 IYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           IYA AG+W  V ++RK M    I K  G S +E   Q+    +  RS
Sbjct: 429 IYASAGQWDGVAKLRKVMKGSKITKSAGHSFIEEGGQLHKFIVEDRS 475



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 127/284 (44%), Gaps = 14/284 (4%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           A   +LD Y  + TL+ L  ++     +   P+    +M  +   G M     +F  + +
Sbjct: 120 AATALLDMYTKVGTLE-LARKLFDQMPVRGVPTWN-AMMAGHARFGDMDVALELFRLMPS 177

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQ 151
           +NVV +  +I  Y  +  Y +AL ++  M    G  P+  T   +  A +   +L +G +
Sbjct: 178 RNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQR 237

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS-KDVVTWNSMVAGYAQNG 210
           +     K G   NL+  N ++ MY KCG +  A +V N++ S +++ +WNSM+ G A +G
Sbjct: 238 VEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHG 297

Query: 211 RFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLV 265
              + L +  +M      PD  T   LL + T+     V   + +F  +         L 
Sbjct: 298 ECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGG--MVEKGRHIFKSMTTSFNIIPKLE 355

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            +  M+ +        EA ++  +M    ++P+++   ++L AC
Sbjct: 356 HYGCMVDLLGRAGQLREAYEVIQRMP---MKPDSVIWGALLGAC 396


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 175/537 (32%), Positives = 295/537 (54%), Gaps = 36/537 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++HA  ++ +    + S+   L+  Y  C ++   R +FD++  KN++ +  +I  Y+ 
Sbjct: 250 KQIHA-YVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQ 308

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N   ++A+ ++  M+  G+ PD +    VL +C    +L  G Q+H   +K  L+ + F 
Sbjct: 309 NSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFV 368

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            NGL+ MY K   L +A++V + M  ++V+++N+M+ GY+   +  EAL++  EM     
Sbjct: 369 KNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLF 428

Query: 228 KPDADTMASLLPSVTN---------------------------------TSPENVLSVKE 254
            P   T  SLL    +                                 +    V   + 
Sbjct: 429 PPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARH 488

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F +++ K++V WN M   Y  +    EA+ LY  ++    +PN  + A+++ A  +L++
Sbjct: 489 VFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLAS 548

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           L  G++ H  + +  L     + NALVDMYAKCGS+ EAR +F+    +DVV W SMIS 
Sbjct: 549 LRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMIST 608

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
           +   G+  +A+ +F +M+  G+ P+ + FV+VLSACSHAG +E+G  +F  M   + + P
Sbjct: 609 HAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMP-GFGIKP 667

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
             EH+AC+V LLGR+GK+ EA + I++MP+EP   +W SL++AC +  N+++G  AA+  
Sbjct: 668 GTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMA 727

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
               P  SG Y+LLSNI+A  G W DVK+VR  M+S  + K PG S +E+N++V + 
Sbjct: 728 ISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVF 784



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 232/463 (50%), Gaps = 41/463 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +H QII++  L S+  +   L+       ++ + R VFD++ +KN++ ++ ++  Y  
Sbjct: 47  KIIHGQIIVSG-LQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQ 105

Query: 108 NYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
                +AL V+ ++    G  P+ +    V++AC+    +  G Q+H  VV+ G D +++
Sbjct: 106 QGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVY 165

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
            G  L+  Y K G ++EAR V + +  K  VTW +++AGY + GR   +L++  +M    
Sbjct: 166 VGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETN 225

Query: 227 IKPDADTMASLLP---------------------------SVTN------TSPENVLSVK 253
           + PD   ++S+L                            SV N      T    V + +
Sbjct: 226 VVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGR 285

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           ++F ++  KN++SW  MI+ Y  NS   EA+ L+ +M   G +P+  +  SVL +CG   
Sbjct: 286 KLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSRE 345

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           AL  GR++H Y  +  L+ +  ++N L+DMYAK   L +A+ VFD M  Q+V+S+ +MI 
Sbjct: 346 ALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIE 405

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
            Y    +  +A+ LF +M +    P  + FVS+L   +    LE  +    ++    K  
Sbjct: 406 GYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLII---KFG 462

Query: 434 PRIEHFA--CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
             ++ FA   L+D+  +   V++A  + ++M  E +  +W ++
Sbjct: 463 VSLDLFAGSALIDVYSKCSYVKDARHVFEEMN-EKDIVVWNAM 504



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 218/461 (47%), Gaps = 44/461 (9%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +LH   ++      +  +G  L+  Y   G + + R VFD+++ K  V +  +I  Y   
Sbjct: 150 QLHG-FVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKC 208

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
                +L ++  M      PD Y    VL ACS    L  G QIH  V++ G + ++   
Sbjct: 209 GRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVV 268

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           N L+  Y KC  +K  R++ + M  K++++W +M++GY QN    EA+ +  EM  L  K
Sbjct: 269 NVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWK 328

Query: 229 PDADTMASLLPSVTN-------------------TSPENV--------------LSVKEM 255
           PD     S+L S  +                    S E V              +  K++
Sbjct: 329 PDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKV 388

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F  +  +N++S+N MI  Y++    +EA++L+ +M V    P+ ++  S+L     L AL
Sbjct: 389 FDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFAL 448

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
            L ++IH  + +  +  +L   +AL+D+Y+KC  + +AR VF++M  +D+V W +M   Y
Sbjct: 449 ELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGY 508

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-RYYFKIMTEQYKLVP 434
               +  +A+ L+S +  S   P+   F ++++A S+   L  G +++ +++       P
Sbjct: 509 TQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCP 568

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
            + +   LVD+  + G +EEA  +        N  IW  +V
Sbjct: 569 FVTN--ALVDMYAKCGSIEEARKMF-------NSSIWRDVV 600



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 182/386 (47%), Gaps = 38/386 (9%)

Query: 31  GDACNDILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVF 87
           G AC  +L      + L   +++HA   I  +L S+  +   L+  Y     ++D + VF
Sbjct: 331 GFACTSVLTSCGSREALEQGRQVHA-YTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVF 389

Query: 88  DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLL 147
           D +  +NV+ +N +I  Y +     +AL ++  M V  F P   T+  +L   +   +L 
Sbjct: 390 DVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALE 449

Query: 148 VGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA 207
           +  QIH  ++K G+  +LF G+ L+ +Y KC  +K+AR V  +M  KD+V WN+M  GY 
Sbjct: 450 LSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYT 509

Query: 208 QNGRFDEALDVCREMESLRIKPDADTMASLL---------------------------PS 240
           Q+   +EAL +   ++  R KP+  T A+L+                           P 
Sbjct: 510 QHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPF 569

Query: 241 VTNTSPE------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
           VTN   +      ++   ++MF     +++V WN MI+ +A +    EA+ ++ +M   G
Sbjct: 570 VTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEG 629

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
           I+PN ++  +VL AC     +  G      +    ++P       +V +  + G L EA+
Sbjct: 630 IQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLFEAK 689

Query: 355 TVFDQMRCQ-DVVSWTSMISAYGMSG 379
              ++M  +   + W S++SA  ++G
Sbjct: 690 EFIEKMPIEPAAIVWRSLLSACRIAG 715



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 90/189 (47%), Gaps = 3/189 (1%)

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           +++  + P     A++L      + ++  + IH  +    LQ +  L N L+++ +K   
Sbjct: 18  LQIPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDR 77

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM-SGLCPDSIAFVSVLS 408
           +  AR VFD+M  +++++W+SM+S Y   G   +A+ +F  +   SG  P+     SV+ 
Sbjct: 78  VDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIR 137

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
           AC+  G++E+G      +         +     L+D   + G +EEA  +  Q+  E   
Sbjct: 138 ACTQLGVVEKGAQLHGFVVRS-GFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLS-EKTA 195

Query: 469 RIWGSLVAA 477
             W +++A 
Sbjct: 196 VTWTTIIAG 204


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 167/478 (34%), Positives = 269/478 (56%), Gaps = 42/478 (8%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G +   R VF+E+  K  V +N +I  YV + +  DA  +++ M       D +T+  VL
Sbjct: 248 GDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVL 307

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDY----NLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
            AC+ +   + G  +H  ++++  ++     L   N LV +Y K G +  A+R+ + M  
Sbjct: 308 SACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNL 367

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK 253
           KDVV+WN++++GY  +G  D+A+                                     
Sbjct: 368 KDVVSWNTILSGYIDSGCLDKAV------------------------------------- 390

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           E+F  +  KN +SW VM++ Y +  +  +A+ L+ QM    ++P   + A  + ACG+L 
Sbjct: 391 EVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELG 450

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           AL  GR++H ++ +   + +    NAL+ MYAKCG++ +AR VF  M   D VSW +MIS
Sbjct: 451 ALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMIS 510

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
           A G  G G +A+ LF +M+  G+ PD I+F+++L+AC+HAGL++EG +YF+ M   + + 
Sbjct: 511 ALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGIS 570

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P  +H+A L+DLLGR+G++ EA DLIK MP EP   IW ++++ C    +M+ G  AAD 
Sbjct: 571 PGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQ 630

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           +F + P   G Y+LLSN Y+ AGRW D  RVRK M  +G+KK PG S +E+  ++ + 
Sbjct: 631 LFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVF 688



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 40/228 (17%)

Query: 48  KKLHAQIIINQHLHSN--PSIGL----KLMRTYGACGQMVDTRHVFDEITNKNVVFFN-- 99
           K +H QII    L  N  P   L     L+  Y   G++V  + +FD +  K+VV +N  
Sbjct: 320 KSVHGQII---RLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTI 376

Query: 100 -----------------------------VLIRSYVNNYLYYDALHVYKNMSVHGFDPDC 130
                                        V++  YV+  L  DAL ++  M      P  
Sbjct: 377 LSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCD 436

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
           YTY   + AC    +L  G Q+H  +V+ G + +   GN L+ MY KCG + +AR V   
Sbjct: 437 YTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLV 496

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238
           MP+ D V+WN+M++   Q+G   EAL++  +M +  I PD  +  ++L
Sbjct: 497 MPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTIL 544



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 136/317 (42%), Gaps = 50/317 (15%)

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGR 319
            ++ V  N M++ +A  S+ A AV ++  +   G + P+  S  +++ A G +  L    
Sbjct: 124 RRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPH 183

Query: 320 --KIHRYVERKKLQPNLRLENALVDMYAKC------------------------------ 347
             ++H  V +      L + NAL+ +Y KC                              
Sbjct: 184 CTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVG 243

Query: 348 ----GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
               G +  AR+VF+++  +  V W +MIS Y  SG   DA  LF +M+   +  D   F
Sbjct: 244 YVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTF 303

Query: 404 VSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPR--IEHFACLVDLLGRAGKVEEAYDLIK 460
            SVLSAC++AG    G+  + +I+  Q   VP   +     LV L  + GK+  A  +  
Sbjct: 304 TSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFD 363

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGIL-AADHIFHLAP--NQSGYYVLLSNIYAKAGR 517
            M ++ +   W ++     L   +D G L  A  +F + P  N   + V++S  Y   G 
Sbjct: 364 TMNLK-DVVSWNTI-----LSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSG-YVHGGL 416

Query: 518 WGDVKRVRKFMNSKGIK 534
             D  ++   M ++ +K
Sbjct: 417 SEDALKLFNQMRAEDVK 433



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 9/172 (5%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +K  ++LHA ++      SN S G  L+  Y  CG + D R VF  + N + V +N +I 
Sbjct: 452 LKHGRQLHAHLVQCGFEASN-SAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMIS 510

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           +   +    +AL ++  M   G DPD  ++  +L AC+ +  +  G     S+ +   D+
Sbjct: 511 ALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKR---DF 567

Query: 164 NLFNGNG----LVAMYGKCGCLKEARRVLNDMPSKDVVT-WNSMVAGYAQNG 210
            +  G      L+ + G+ G + EAR ++  MP +   + W ++++G   NG
Sbjct: 568 GISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNG 619


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 181/590 (30%), Positives = 305/590 (51%), Gaps = 69/590 (11%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N+++  Y  + ++   +A  + +Q  H N      ++  Y   G++ +  ++FD +  ++
Sbjct: 48  NNLISSYAKLGSIP--YACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRD 105

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNM--SVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
            V +N LI  Y    L Y ++  Y  M  +   F+ +  T+  +L   S    + +G QI
Sbjct: 106 GVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQI 165

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV--------------- 197
           H  VVK G    +F G+ LV MY K G +  AR+V +++P K+VV               
Sbjct: 166 HGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRV 225

Query: 198 ----------------TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
                           +W SM+ G+ QNG   +A+D+ REM+   ++ D  T  S+L + 
Sbjct: 226 EDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTAC 285

Query: 242 TNTSP---------------------------------ENVLSVKEMFLKLDNKNLVSWN 268
                                                 +N+ S + +F K+  KN+VSW 
Sbjct: 286 GGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWT 345

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
            M+  Y  N    EAV  +  M+ +GIEP+  ++ SV+ +C +L++L  G + H      
Sbjct: 346 AMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTS 405

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
            L   + + NALV +Y KCGS+ ++  +F+++  +D V+WT+++S Y   G+  + + LF
Sbjct: 406 GLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLF 465

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
             ML  GL PD + F+ VLSACS AGL+E+G   F+ M  ++ +VP  +H+ C++DL  R
Sbjct: 466 ESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSR 525

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508
           AG++EEA + I +MP  P+   W +L+++C  Y NMDIG  AA+ +  L P+ +  YVLL
Sbjct: 526 AGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLL 585

Query: 509 SNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRSS 557
           S++YA  G+W +V R+RK M  KG++K PG S ++  +QV + +   +S+
Sbjct: 586 SSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSN 635



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 193/466 (41%), Gaps = 118/466 (25%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           Y  +LK C  +++      +H  ++K       F  N L++ Y K G +  A +V + MP
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSV 252
             ++ +WN++++ Y++ GR         EME L                           
Sbjct: 72  HPNLYSWNTILSAYSKLGRVS-------EMEYL--------------------------- 97

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY-LQMEVHG-IEPNAISVASVLPACG 310
              F  +  ++ VSWN +I+ YA   +  ++V  Y L ++  G    N I+ +++L    
Sbjct: 98  ---FDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILAS 154

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ----------- 359
               + LGR+IH +V +      + + + LVDMY+K G ++ AR VFD+           
Sbjct: 155 KRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNT 214

Query: 360 -----MRC---------------QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
                MRC               +D +SWTSMI+ +  +G   DA+ +F +M +  L  D
Sbjct: 215 LIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMD 274

Query: 400 SIAFVSVLSACSHAGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVDL------------- 445
              F SVL+AC     L+EG+  +  I+   YK    I   + LVD+             
Sbjct: 275 QYTFGSVLTACGGVMALQEGKQVHAYIIRTDYK--DNIFVASALVDMYCKCKNIKSAEAV 332

Query: 446 ------------------LGRAGKVEEAYDLIKQMP---MEPNERIWGSLVAACCLYSNM 484
                              G+ G  EEA      M    +EP++   GS++++C   +++
Sbjct: 333 FKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASL 392

Query: 485 DIGILAADHIFHLAPNQSGY--YVLLSN----IYAKAGRWGDVKRV 524
           + G       FH     SG   ++ +SN    +Y K G   D  R+
Sbjct: 393 EEGAQ-----FHARALTSGLISFITVSNALVTLYGKCGSIEDSHRL 433


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 174/505 (34%), Positives = 279/505 (55%), Gaps = 35/505 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  YGA   + +   VF+E+  ++VV +  +I +      +   L +   M   G  P+
Sbjct: 162 LVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPN 221

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   +L AC  + ++  G  ++  V K G++ ++   N L++MY KCGCL +A     
Sbjct: 222 KVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQ 281

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP--- 246
            MP++   +WN+++ G+ QN    EAL +  EM    + PD  T+ S+L +         
Sbjct: 282 AMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRK 341

Query: 247 ---------------ENVLS---------------VKEMFLKLDNKNLVSWNVMIAVYAN 276
                          +N+L+                + +F  +  K++VSW VM+  Y  
Sbjct: 342 GMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVK 401

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
                 A +L+ +M++  +  + +++ S+L AC  L AL  GR+IH Y+E   +  +L L
Sbjct: 402 GHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCL 461

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML-MSG 395
           E+ALVDMYAKCG +  A  +F +M+ +  +SW +MI     +G G +AV LF +ML +  
Sbjct: 462 ESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQD 521

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
             PD I   +VL AC+H G+++EG  YF +M+    +VP  EH+ C+VDLLGRAG ++EA
Sbjct: 522 PKPDGITLKAVLGACAHVGMVDEGLRYFYLMS-SLGVVPDTEHYGCIVDLLGRAGMLDEA 580

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
           +  IK+MP+EPN  IWGSL+AAC ++  MD+G +   HI ++APN  G +VL+SN++A+ 
Sbjct: 581 FHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEE 640

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS 540
            +W DV+ VR  M S+GI+K PG S
Sbjct: 641 SQWDDVEHVRGLMGSRGIEKTPGHS 665



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 140/464 (30%), Positives = 222/464 (47%), Gaps = 41/464 (8%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIG---LKLMRTYGACGQMVDTRHVFDEITNKN 94
           LD       L +LH +++   HL S+  +    + L+ +  A   M   R VFD +   N
Sbjct: 24  LDACASRAHLAELHGRLV-RAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPN 82

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLV---GLQ 151
              +N +IR Y +     DAL V++ M   G  PD YT   V+ A +    L     G  
Sbjct: 83  AFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDA 142

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           IH  V ++G   ++F  +GLV  YG    +KEA +V  +M  +DVV+W SM++  AQ G 
Sbjct: 143 IHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGH 202

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSP----------------------ENV 249
           +D+ L +  EM++  I P+  T+ SLL +   T                         N 
Sbjct: 203 WDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNA 262

Query: 250 L-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
           L              E F  +  +   SWN +I  +  N    EA+ ++ +M +HG+ P+
Sbjct: 263 LISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPD 322

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
            I++ SVL AC  L  L  G  +H Y++   +  +  L N+L++MYAKCG +  A  VF 
Sbjct: 323 GITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQ 382

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
            M  +DVVSWT M+  Y    Q   A  LF +M ++ +    +A VS+LSACS  G L++
Sbjct: 383 TMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDK 442

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           GR     + E+  +   +   + LVD+  + G ++ A ++ ++M
Sbjct: 443 GREIHSYI-EEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKM 485



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 98/248 (39%), Gaps = 23/248 (9%)

Query: 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
           LY         P    + + L AC   + L    ++H  + R  L  +  +   L+ + A
Sbjct: 4   LYFHGNASQARPIRHHLLAYLDACASRAHLA---ELHGRLVRAHLTSDSFVAGRLIALLA 60

Query: 346 KCGS---LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
              +   +  AR VFD M   +   W  MI  Y       DA+A+F +M   G+ PD+  
Sbjct: 61  SPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNY- 119

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH------FACLVDLLGRAGKVEEAY 456
               ++A   A     G  +       + LV RI         + LV+  G    V+EA 
Sbjct: 120 ---TMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEAS 176

Query: 457 DLIKQMPMEPNERIWGSLVAAC--CLYSNMDIGILAADHIFHLAPNQSGYYVLLS----N 510
            + ++M  E +   W S+++AC  C + +  + +L+      + PN+     LLS     
Sbjct: 177 KVFEEM-YERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQT 235

Query: 511 IYAKAGRW 518
                GRW
Sbjct: 236 QAVDEGRW 243


>gi|296082436|emb|CBI21441.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 258/455 (56%), Gaps = 43/455 (9%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +FD+++  NV  +  ++  Y  N L  + +  Y  M + G  PD Y +P V +AC     
Sbjct: 419 LFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLW 478

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           L VG+Q+H  VV  G +++L   N L+ MY K G +   RRV ++M  +DV++WNSM++G
Sbjct: 479 LEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISG 538

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           Y +  R  +AL+V                                     F  +D  ++V
Sbjct: 539 YCK--RIQDALNV-------------------------------------FELMDRFDVV 559

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           +WN MI  + +  M   A++ + +M+  GI  N I++++VLPAC DL +   G+++H Y+
Sbjct: 560 TWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTVLPAC-DLKS---GKQVHAYI 615

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
            +      + + NAL+ MY+KCG +  A ++F  M  +D+VSW +MI  +GM G G  A+
Sbjct: 616 TKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHGLGQFAL 675

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
            L   M  S +CP+S+ F S LSACSH+GL++EG   F  MT  +   P +EHF+C+VDL
Sbjct: 676 QLLRDMSHSDVCPNSVTFTSALSACSHSGLVDEGMELFHTMTRDFGFTPGMEHFSCVVDL 735

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           L RA ++E+A   I++MP++P++ IW +L+AAC    N+ +  LAA+ +F L P  +G Y
Sbjct: 736 LARADRLEDAVGFIEKMPLKPSKHIWSALLAACRAQQNVSVAKLAAEQLFQLEPEHAGNY 795

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           V LSNIYA+AGRW D   VRK M  +G+ K  G S
Sbjct: 796 VTLSNIYARAGRWDDAVAVRKLMEDRGLVKPSGYS 830



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 111/241 (46%), Gaps = 34/241 (14%)

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
           S + +F KL   N+ +W  ++  Y+ N +  E V  Y +M++ G+ P+      V  ACG
Sbjct: 415 SAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACG 474

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
            L  L +G ++H+ V     + +L++ N+L+DMY+K G +   R VFD+M  +DV+SW S
Sbjct: 475 QLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNS 534

Query: 371 MISAYGMSGQ-----------------------------GYDAVALFSKMLMSGLCPDSI 401
           MIS Y    Q                             G+ A+  FSKM  SG+  + I
Sbjct: 535 MISGYCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQI 594

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
              +VL AC     L+ G+     +T+       I  +  L+ +  + G +  AY +   
Sbjct: 595 TISTVLPACD----LKSGKQVHAYITKN-SFSSVIPVWNALIHMYSKCGCIGTAYSIFSN 649

Query: 462 M 462
           M
Sbjct: 650 M 650



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 106/214 (49%), Gaps = 14/214 (6%)

Query: 34  CNDILDKYP---DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI 90
           CN ++D Y    D+ + +++  +++    L  N  I        G C ++ D  +VF+ +
Sbjct: 501 CNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMIS-------GYCKRIQDALNVFELM 553

Query: 91  TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGL 150
              +VV +N +I  +V+  + + AL  +  M   G   +  T   VL AC     L  G 
Sbjct: 554 DRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTVLPAC----DLKSGK 609

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
           Q+H  + K      +   N L+ MY KCGC+  A  + ++M S+D+V+WN+M+ G+  +G
Sbjct: 610 QVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHG 669

Query: 211 RFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
               AL + R+M    + P++ T  S L + +++
Sbjct: 670 LGQFALQLLRDMSHSDVCPNSVTFTSALSACSHS 703



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 8/132 (6%)

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
           + A+ +FD++   +V +WT+++  Y  +G   + V  +S+M + G+ PD   F  V  AC
Sbjct: 414 SSAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRAC 473

Query: 411 SHAGLLEEGRYYFK---IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
                LE G    K   I   ++ L    +    L+D+  ++G V     +  +M +E +
Sbjct: 474 GQLLWLEVGIQVHKDVVICGCEFDL----QVCNSLIDMYSKSGDVGSGRRVFDEM-VERD 528

Query: 468 ERIWGSLVAACC 479
              W S+++  C
Sbjct: 529 VLSWNSMISGYC 540


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 178/525 (33%), Positives = 294/525 (56%), Gaps = 34/525 (6%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
             ++P +   L+  Y  C  + D  +VFD+++ K    +N +I +YV N   YD L +YK
Sbjct: 287 FENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYK 346

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M V    PD  T   VL +C    S   G  IH  +VK  +  N+   + L+ MY KCG
Sbjct: 347 QMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCG 406

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
              +A  + N +  +DVV W SM++G+ QN ++ EAL+    M     KPD+D MAS++ 
Sbjct: 407 NSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVS 466

Query: 240 SVTNTSPENV------LSVK--------------EMFLKLDN-------------KNLVS 266
           + T     N+      L++K              +M+ K +              KNLV+
Sbjct: 467 ACTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVA 526

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           WN +I+ Y  N +P  ++ L+ QM  +G+ P+++S+ SVL +   ++ L  G+ +H Y+ 
Sbjct: 527 WNSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLI 586

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           R+++  +L+LENAL+DMY KCG L  A+ +F  M   ++V+W  MI+  G  G    A++
Sbjct: 587 RQRIPSDLQLENALIDMYIKCGFLKYAQHIFQNMLQTNLVTWNIMIAGCGSHGDWLKAMS 646

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           LF +M   G+ PD I F+S+L++C+H G +EEG   F++MT ++ + PR+EH+  +VDLL
Sbjct: 647 LFDEMRSFGIAPDDITFISLLTSCNHCGFIEEGLKLFQLMTVEHGIEPRMEHYVNIVDLL 706

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
           GRAG++++AY  +K +P+EP+  IW SL+ +C ++ N+++G LAA  +  + P++   YV
Sbjct: 707 GRAGRLDDAYAFVKNLPIEPDRSIWLSLLCSCRVHHNVELGKLAAHKLLDIEPSRGSNYV 766

Query: 507 LLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            L N+Y +         +R  M  KG+KK PG S +E+ + + + 
Sbjct: 767 QLLNLYGENELQDRAANLRASMKEKGLKKTPGCSWIEVGNSIDVF 811



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 132/502 (26%), Positives = 252/502 (50%), Gaps = 45/502 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFFNVLIRSYV 106
           K++H    + +  + +P +   L+  Y +CG+ +D   +F E+ +K NVV +NV+I  + 
Sbjct: 174 KQIHG-YSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFG 232

Query: 107 NNYLYYDALHVY---KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            N L+ ++L VY   KN +V        ++   L AC     +  G+Q+HC +VK+G + 
Sbjct: 233 ENGLWENSLEVYLLAKNENVKLVSA---SFTSTLSACCQGEFVSFGMQVHCDLVKLGFEN 289

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           + +    L+ MY KC  +++A  V + +  K    WN+M++ Y  NGR  + L + ++M+
Sbjct: 290 DPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMK 349

Query: 224 SLRIKPDADTMASLL----------------------PSVTNTSPENVL----------- 250
            L+I PD+ T  ++L                      P  +N + ++ L           
Sbjct: 350 VLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSD 409

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
               +F  +  +++V+W  MI+ +  N    EA++ Y  M V+G +P++  +ASV+ AC 
Sbjct: 410 DANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACT 469

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
            L  + LG  IH    +  L+ ++ + ++LVDMY+K      +  VF  M  +++V+W S
Sbjct: 470 GLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWNS 529

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           +IS Y  +G    +++LFS+M   GL PDS++  SVL + S   +L +G+     +  Q 
Sbjct: 530 IISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQ- 588

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
           ++   ++    L+D+  + G ++ A  + + M ++ N   W  ++A C  + +    +  
Sbjct: 589 RIPSDLQLENALIDMYIKCGFLKYAQHIFQNM-LQTNLVTWNIMIAGCGSHGDWLKAMSL 647

Query: 491 ADHI--FHLAPNQSGYYVLLSN 510
            D +  F +AP+   +  LL++
Sbjct: 648 FDEMRSFGIAPDDITFISLLTS 669



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 224/475 (47%), Gaps = 51/475 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFD-----EITNKNVVFFNVLI 102
           K +H+ II     +S+P I   L+  Y  CG   +   VFD     E++ ++V F+N ++
Sbjct: 69  KTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIV 128

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             Y       + +  +  M + G  PD Y+   +L A  G   L    QIH   V+    
Sbjct: 129 NGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGASDG--HLGYAKQIHGYSVRKVFY 186

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCRE 221
            + F  +GL+ MY  CG   +A R+  ++  K +VV WN M+ G+ +NG ++ +L+V   
Sbjct: 187 GDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLL 246

Query: 222 MESLRIKPDADTMASLLPS----------------VTNTSPEN----------------- 248
            ++  +K  + +  S L +                +     EN                 
Sbjct: 247 AKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKL 306

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           V   + +F ++  K    WN MI+ Y  N    + + +Y QM+V  I P++++  +VL +
Sbjct: 307 VEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSS 366

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  + +   GR IH  + ++ +Q N+ L++AL+ MY+KCG+  +A ++F+ ++ +DVV+W
Sbjct: 367 CCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAW 426

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG----RYYFK 424
            SMIS +  + +  +A+  ++ M + G  PDS    SV+SAC+    +  G        K
Sbjct: 427 GSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIK 486

Query: 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
              EQ   V      + LVD+  +    + + ++   MP++ N   W S+++  C
Sbjct: 487 SGLEQDVFVA-----SSLVDMYSKFNFPKMSGNVFSDMPLK-NLVAWNSIISCYC 535



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 192/408 (47%), Gaps = 45/408 (11%)

Query: 111 YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY-NLFNGN 169
           Y DAL  Y   S +  +   +TYP +LKAC   ++L  G  IH +++  G  Y + +   
Sbjct: 33  YVDALQFY---SRNPLNATRFTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITT 89

Query: 170 GLVAMYGKCGCLKEARRVLNDMPS-----KDVVTWNSMVAGYAQNGRFDEAL-DVCREME 223
            L+  Y KCG    A +V + +P      +DV  WNS+V GY + G   E +   CR M+
Sbjct: 90  SLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCR-MQ 148

Query: 224 SLRIKPDADTMASLLPS----------VTNTSPENV---------------------LSV 252
              ++PDA ++  LL +          +   S   V                     L  
Sbjct: 149 LFGVRPDAYSLCILLGASDGHLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDA 208

Query: 253 KEMFLKLDNK-NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
             +F +L++K N+V+WNVMI  +  N +   ++++YL  +   ++  + S  S L AC  
Sbjct: 209 WRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQ 268

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
              +  G ++H  + +   + +  +  +L+ MY+KC  + +A  VFDQ+  +    W +M
Sbjct: 269 GEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAM 328

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           ISAY  +G+ YD + ++ +M +  + PDS+   +VLS+C   G  + GR     + ++  
Sbjct: 329 ISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKR-P 387

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
           +   +   + L+ +  + G  ++A  +   +    +   WGS+++  C
Sbjct: 388 IQSNVALQSALLTMYSKCGNSDDANSIFNTIKGR-DVVAWGSMISGFC 434


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 186/541 (34%), Positives = 297/541 (54%), Gaps = 38/541 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++H   I      +  ++G  L+  Y  CG +   R VF  + +K+ V +N +I     
Sbjct: 122 RQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQ 181

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N  + DA+  Y +M   G  P  +     L +C+    +L+G Q H   +K+GLD ++  
Sbjct: 182 NKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSV 241

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG-RFDEALDVCREMESLR 226
            N L+A+Y +   L E ++V + M  +D V+WN+++   A +G    EA++V  EM    
Sbjct: 242 SNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAG 301

Query: 227 IKPDADTMASLLPSVTNTSP----------------------ENVL-----------SVK 253
             P+  T  +LL +V++ S                       EN L           + +
Sbjct: 302 WSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCE 361

Query: 254 EMFLKL-DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           E+F ++ + ++ VSWN MI+ Y +N +  +A+DL   M   G   +  + A+VL AC  +
Sbjct: 362 EIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATV 421

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
           + L  G ++H    R  L+ ++ + +ALVDMY+KCG +  A   F+ M  +++ SW SMI
Sbjct: 422 ATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMI 481

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           S Y   G G +A+ LF++M +SG  PD I FV VLSACSH GL++EG  YFK MTE Y L
Sbjct: 482 SGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGL 541

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN--MDIGILA 490
           VPR+EH++C+VDLLGRAG++++  + I +MP++PN  IW +++ ACC  +    ++G  A
Sbjct: 542 VPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRA 601

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQI 549
           A+ +F++ P  +  YVLLSN+YA  G+W D+ R R+ M    +KK  G S V M D V +
Sbjct: 602 AEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHV 661

Query: 550 I 550
            
Sbjct: 662 F 662



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 145/538 (26%), Positives = 233/538 (43%), Gaps = 77/538 (14%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G  V  R +FDE+ ++N V +  LI  Y  N +  DA  V K M   GF P+
Sbjct: 41  LINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFLPN 100

Query: 130 CYTYPCVLKACSGSNSLLV---GLQIHCSVVKVGL-DYNLFNGNGLVAMYGKCGCLKEAR 185
            + +   ++AC    S+L    G Q+H   ++ GL D  +  GNGL+ MY KCG +  AR
Sbjct: 101 RFAFGSAIRAC--QESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHAR 158

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP------ 239
            V   M  KD V+WNSM+ G  QN  F++A+     M    + P    + S L       
Sbjct: 159 SVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLG 218

Query: 240 ---------------------SVTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIA 272
                                SV+NT          +   +++F  +  ++ VSWN +I 
Sbjct: 219 CILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIG 278

Query: 273 VYANNSMP-AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
             A++    +EA++++L+M   G  PN ++  ++L     LS   L  +IH  + +  ++
Sbjct: 279 ALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVK 338

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQM-RCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
            +  +ENAL+  Y K G +     +F +M   +D VSW SMIS Y  +     A+ L   
Sbjct: 339 DDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWL 398

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450
           M+  G   D   F +VLSAC+    LE G            L   +   + LVD+  + G
Sbjct: 399 MMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRAC-LESDVVIGSALVDMYSKCG 457

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVA----------ACCLYSNMDIGILAADHIF----- 495
           +++ A      MP+  N   W S+++          A  L++ M +     DHI      
Sbjct: 458 RIDYASRFFNLMPVR-NLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVL 516

Query: 496 ----HLAPNQSG--YYVLLSNIYAKA-------------GRWGDVKRVRKFMNSKGIK 534
               H+     G  Y+  ++ +Y                GR G++ ++  F+N   IK
Sbjct: 517 SACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIK 574



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 168/363 (46%), Gaps = 39/363 (10%)

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
            H +V+K G D +LF  N L+ +Y + G    AR++ ++MP ++ VTW  +++GY QNG 
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGM 81

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNT--------------------------- 244
            ++A  V +EM      P+     S + +   +                           
Sbjct: 82  PEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVG 141

Query: 245 --------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE 296
                      ++   + +F  + +K+ VSWN MI     N    +AV  Y  M   G+ 
Sbjct: 142 NGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLM 201

Query: 297 PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTV 356
           P+  ++ S L +C  L  +LLG++ H    +  L  ++ + N L+ +YA+   L E + V
Sbjct: 202 PSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKV 261

Query: 357 FDQMRCQDVVSWTSMISAYGMSGQGY-DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           F  M  +D VSW ++I A   SG    +A+ +F +M+ +G  P+ + F+++L+  S    
Sbjct: 262 FSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLST 321

Query: 416 LE-EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
            +   + +  I+    K    IE+   L+   G++G++E   ++  +M    +E  W S+
Sbjct: 322 SKLSHQIHALILKYNVKDDNAIEN--ALLACYGKSGEMENCEEIFSRMSERRDEVSWNSM 379

Query: 475 VAA 477
           ++ 
Sbjct: 380 ISG 382



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 110/200 (55%), Gaps = 2/200 (1%)

Query: 45  KTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFFNVLIR 103
           K   ++HA +I+  ++  + +I   L+  YG  G+M +   +F  ++ + + V +N +I 
Sbjct: 323 KLSHQIHA-LILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMIS 381

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            Y++N L   A+ +   M   G   DC+T+  VL AC+   +L  G+++H   ++  L+ 
Sbjct: 382 GYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLES 441

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           ++  G+ LV MY KCG +  A R  N MP +++ +WNSM++GYA++G  D AL +   M+
Sbjct: 442 DVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMK 501

Query: 224 SLRIKPDADTMASLLPSVTN 243
                PD  T   +L + ++
Sbjct: 502 LSGQLPDHITFVGVLSACSH 521


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 174/505 (34%), Positives = 279/505 (55%), Gaps = 35/505 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  YGA   + +   VF+E+  ++VV +  +I +      +   L +   M   G  P+
Sbjct: 162 LVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPN 221

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   +L AC  + ++  G  ++  V K G++ ++   N L++MY KCGCL +A     
Sbjct: 222 KVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQ 281

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP--- 246
            MP++   +WN+++ G+ QN    EAL +  EM    + PD  T+ S+L +         
Sbjct: 282 AMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRK 341

Query: 247 ---------------ENVLS---------------VKEMFLKLDNKNLVSWNVMIAVYAN 276
                          +N+L+                + +F  +  K++VSW VM+  Y  
Sbjct: 342 GMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVK 401

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
                 A +L+ +M++  +  + +++ S+L AC  L AL  GR+IH Y+E   +  +L L
Sbjct: 402 GHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCL 461

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML-MSG 395
           E+ALVDMYAKCG +  A  +F +M+ +  +SW +MI     +G G +AV LF +ML +  
Sbjct: 462 ESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQD 521

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
             PD I   +VL AC+H G+++EG  YF +M+    +VP  EH+ C+VDLLGRAG ++EA
Sbjct: 522 PKPDGITLKAVLGACAHVGMVDEGLRYFYLMS-SLGVVPDTEHYGCIVDLLGRAGMLDEA 580

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
           +  IK+MP+EPN  IWGSL+AAC ++  MD+G +   HI ++APN  G +VL+SN++A+ 
Sbjct: 581 FHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEE 640

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS 540
            +W DV+ VR  M S+GI+K PG S
Sbjct: 641 SQWDDVEHVRGLMGSRGIEKTPGHS 665



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 139/464 (29%), Positives = 222/464 (47%), Gaps = 41/464 (8%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIG---LKLMRTYGACGQMVDTRHVFDEITNKN 94
           LD       L +LH +++   HL S+  +    + L+ +  A   M   R VFD +   N
Sbjct: 24  LDACASRAHLAELHGRLV-RAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPN 82

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLV---GLQ 151
              +N +IR Y +     DAL V++ M   G  PD YT   V+ A +    L     G  
Sbjct: 83  AFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDA 142

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           IH  V ++G   ++F  +GLV  YG    ++EA +V  +M  +DVV+W SM++  AQ G 
Sbjct: 143 IHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGH 202

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSP----------------------ENV 249
           +D+ L +  EM++  I P+  T+ SLL +   T                         N 
Sbjct: 203 WDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNA 262

Query: 250 L-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
           L              E F  +  +   SWN +I  +  N    EA+ ++ +M +HG+ P+
Sbjct: 263 LISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPD 322

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
            I++ SVL AC  L  L  G  +H Y++   +  +  L N+L++MYAKCG +  A  VF 
Sbjct: 323 GITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQ 382

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
            M  +DVVSWT M+  Y    Q   A  LF +M ++ +    +A VS+LSACS  G L++
Sbjct: 383 TMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDK 442

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           GR     + E+  +   +   + LVD+  + G ++ A ++ ++M
Sbjct: 443 GREIHSYI-EEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKM 485



 Score = 42.7 bits (99), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 98/248 (39%), Gaps = 23/248 (9%)

Query: 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
           LY         P    + + L AC   + L    ++H  + R  L  +  +   L+ + A
Sbjct: 4   LYFHGNASQARPIRHHLLAYLDACASRAHLA---ELHGRLVRAHLTSDSFVAGRLIALLA 60

Query: 346 KCGS---LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
              +   +  AR VFD M   +   W  MI  Y       DA+A+F +M   G+ PD+  
Sbjct: 61  SPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNY- 119

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH------FACLVDLLGRAGKVEEAY 456
               ++A   A     G  +       + LV RI         + LV+  G    VEEA 
Sbjct: 120 ---TMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEAS 176

Query: 457 DLIKQMPMEPNERIWGSLVAAC--CLYSNMDIGILAADHIFHLAPNQSGYYVLLS----N 510
            + ++M  E +   W S+++AC  C + +  + +L+      + PN+     LLS     
Sbjct: 177 KVFEEM-YERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQT 235

Query: 511 IYAKAGRW 518
                GRW
Sbjct: 236 QAVDEGRW 243


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 183/526 (34%), Positives = 280/526 (53%), Gaps = 53/526 (10%)

Query: 37  ILDKYP---------DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGAC---GQMVDTR 84
           +L KYP          +K L ++HAQ I    + S+  +  +++ ++ A    G +   R
Sbjct: 32  LLCKYPILRHLSSCKTLKDLTQIHAQTITTG-IFSDNFVASRIL-SFAALSPHGSIPYAR 89

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF-DPDCYTYPCVLKACSGS 143
            +F  I   ++   N LIR+Y  +    DA+  Y  M+      PD +T+P +LKACS  
Sbjct: 90  FLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEI 149

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
            SL +G  IH  V K+G    +   N LV MY  CG ++ A  V +  P  D  +WN M+
Sbjct: 150 PSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMI 209

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKN 263
            GY + G F                                      S + MF  + +++
Sbjct: 210 GGYLKCGVFK-------------------------------------SARRMFEAMPDRD 232

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR 323
           +VSW+VMI  Y   S   E + L+  M    IEPN   + + L AC  L A+  G+ I R
Sbjct: 233 VVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIER 292

Query: 324 YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383
           Y+ERK ++  +RL  AL+DMY+KCGS+  A  VF +M+ ++V++W++MI+   ++GQG D
Sbjct: 293 YMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKD 352

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV 443
           A+ LFS+M M G+ P+ + F+ +L+ACSH+ L++EG  +F  MT  Y L P   H  C+V
Sbjct: 353 ALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMV 412

Query: 444 DLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503
           DL GRAG +++A  +IK MP +PN  IWG+L+ AC ++ + ++G      +  L PN  G
Sbjct: 413 DLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGG 472

Query: 504 YYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            YVLLSNIYA  GRW  V  +R+ M  + + K PG S +++ D + 
Sbjct: 473 RYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIH 518



 Score = 42.4 bits (98), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 89/211 (42%), Gaps = 24/211 (11%)

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC-PDSIAFVSV 406
           GS+  AR +F ++R  D+    ++I AY  S    DAV  +S+M  S +  PD   F  +
Sbjct: 83  GSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLL 142

Query: 407 LSACSHAGLLEEGRYYFKIMTEQYKL--VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM 464
           L ACS    L  G     I +  +KL     +     LV +    G +E A  +  + P 
Sbjct: 143 LKACSEIPSLRLGE---AIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTP- 198

Query: 465 EPNERIWGSLVAACCLYSNMDIGIL-AADHIFHLAPNQSGY-YVLLSNIYAKAGRWGDVK 522
           E +   W  ++        +  G+  +A  +F   P++    + ++ N Y +  R     
Sbjct: 199 ECDGASWNIMIGG-----YLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESR----- 248

Query: 523 RVRKFMNSKGI-KKMPGASVEMNDQVQIIAL 552
               F    G+ + M G  +E N+ V + AL
Sbjct: 249 ----FKEGLGLFQDMMGEKIEPNESVLVNAL 275


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 176/563 (31%), Positives = 308/563 (54%), Gaps = 72/563 (12%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LHA+++++  +  N  +G KL+  Y   G + D  +VF +I  KN+  +N L  SY  
Sbjct: 23  KQLHARLVLSSVVPDN-FLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALFISYTL 81

Query: 108 NYLYYDALHVYK---NMSVHGFDPDCYTYPCVLKACSG--SNSLLVGLQIHCSVVKVGLD 162
           + ++ D L ++    N +     PD +T  C LKA +   SNS L   ++H  +++ GL+
Sbjct: 82  HNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAK-EVHSFILRRGLE 140

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
           Y++F  N L+  Y +C  L  AR + + MP +D V+WN+M+AGY+Q G ++E  ++ R M
Sbjct: 141 YDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVM 200

Query: 223 -ESLRIKPDADTMASLLPSVTNTSP------------ENVLSV----------------- 252
             S+ +KP+A T  S+L +   ++             E+ + +                 
Sbjct: 201 LSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGI 260

Query: 253 ----KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ------------------- 289
               +E+F ++  K+ +++  MI+ Y  +    +A+DL+ +                   
Sbjct: 261 LDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQN 320

Query: 290 ------------MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
                       M+ HG  PN +++AS+LP     S L  G++IH Y  R     N+ + 
Sbjct: 321 NRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVA 380

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
            A++D YAKCG L  A+ VFDQ++ + +++WTS+ISAY + G    A++LF +ML +G+ 
Sbjct: 381 TAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQ 440

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
           PD + F SVL+AC+H+G L+E    F ++  +Y + P +EH+AC+V +L RAGK+ +A +
Sbjct: 441 PDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVE 500

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
            I +MP+EP  ++WG+L+    +  ++++G    D +F + P  +G YV+++N+Y+++GR
Sbjct: 501 FISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIMANLYSQSGR 560

Query: 518 WGDVKRVRKFMNSKGIKKMPGAS 540
           W D   +R  M    +KK+PG S
Sbjct: 561 WKDADTIRDLMKEVRLKKIPGNS 583



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 161/357 (45%), Gaps = 69/357 (19%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           Y  +++ C+      VG Q+H  +V   +  + F G+ L++ Y K G +++A  V   +P
Sbjct: 6   YGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIP 65

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREM---ESLRIKPDADT-------MASLLPS-- 240
            K++ +WN++   Y  +    + L +   +    S  +KPD  T       +ASL  +  
Sbjct: 66  RKNIFSWNALFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSG 125

Query: 241 -------------------VTN------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
                              V N      +  + ++  + MF ++  ++ VSWN M+A Y+
Sbjct: 126 LAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYS 185

Query: 276 NNSMPAEAVDLY-LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
                 E  +L+ + +    ++PNA++  SVL AC   + L  G ++HR+V   +++ ++
Sbjct: 186 QGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDV 245

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY---GMSGQGYD-------- 383
            L NA++ +YAKCG L  AR +F++M  +D +++ SMIS Y   G   Q  D        
Sbjct: 246 SLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQERP 305

Query: 384 --------------------AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
                               AV +F  M   G  P+++   S+L   SH   L+ G+
Sbjct: 306 RLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGK 362



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 83/187 (44%), Gaps = 12/187 (6%)

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           N  +   ++  C D     +G+++H  +    + P+  L + L+  Y+K GS+ +A  VF
Sbjct: 2   NYSAYGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVF 61

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG---LCPDSIAFVSVLSAC---- 410
            ++  +++ SW ++  +Y +     D + LFS ++ S    + PD       L A     
Sbjct: 62  GKIPRKNIFSWNALFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLF 121

Query: 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI 470
           S++GL +E   +      +Y +         L+    R  ++  A  +  +MP E +   
Sbjct: 122 SNSGLAKEVHSFILRRGLEYDIFV----VNALITFYSRCDELVLARIMFDRMP-ERDTVS 176

Query: 471 WGSLVAA 477
           W +++A 
Sbjct: 177 WNAMLAG 183


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 204/615 (33%), Positives = 317/615 (51%), Gaps = 68/615 (11%)

Query: 2   KAVVLLCRHFSTTK------PVQALVLSTQYTLLSGDACNDILDK---------YPDIKT 46
           K V L CR+ S  +      P+ + +    +T+L G A    LDK         Y D++ 
Sbjct: 74  KLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEP 133

Query: 47  -------LKKL---HAQIIINQHLH-----SNPSIGLKLM----RTYGACGQMVDTRHVF 87
                  L K+    A++ + + +H     S  S+ L  M      Y  C Q+ + R VF
Sbjct: 134 VVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVF 193

Query: 88  DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLL 147
           D +  +++V +N ++  Y  N +   AL + K+M      P   T   VL A S    + 
Sbjct: 194 DRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLIS 253

Query: 148 VGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA 207
           VG +IH   ++ G D  +     LV MY KCG L+ AR++ + M  ++VV+WNSM+  Y 
Sbjct: 254 VGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYV 313

Query: 208 QNGRFDEALDVCREMESLRIKP-DADTMASLLP--------------------------S 240
           QN    EA+ + ++M    +KP D   M +L                            S
Sbjct: 314 QNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVS 373

Query: 241 VTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
           V N+        + V +   MF KL ++ LVSWN MI  +A N  P +A++ + QM    
Sbjct: 374 VVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRT 433

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
           ++P+  +  SV+ A  +LS     + IH  V R  L  N+ +  ALVDMYAKCG++  AR
Sbjct: 434 VKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIAR 493

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            +FD M  + V +W +MI  YG  G G  A+ LF +M    + P+ + F+SV+SACSH+G
Sbjct: 494 LIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSG 553

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
           L+E G   F +M E Y +   ++H+  +VDLLGRAG++ EA+D I QMP++P   ++G++
Sbjct: 554 LVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAM 613

Query: 475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534
           + AC ++ N++    AA+ +F L P+  GY+VLL+NIY  A  W  V +VR  M  +G++
Sbjct: 614 LGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLR 673

Query: 535 KMPGAS-VEMNDQVQ 548
           K PG S VE+ ++V 
Sbjct: 674 KTPGCSMVEIKNEVH 688



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 137/505 (27%), Positives = 242/505 (47%), Gaps = 46/505 (9%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +L++   +K L+++   ++    L+       KL+  +   G + +   VF+ I +K  V
Sbjct: 43  LLERCSSLKELRQI-LPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNV 101

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            ++ +++ +        AL  +  M     +P  Y +  +LK C     L VG +IH  +
Sbjct: 102 LYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLL 161

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           VK G   +LF   GL  MY KC  + EAR+V + MP +D+V+WN++VAGY+QNG    AL
Sbjct: 162 VKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMAL 221

Query: 217 DVCREMESLRIKPDADTMASLLPSVT------------------------NTSPE----- 247
           ++ + M    +KP   T+ S+LP+V+                        N S       
Sbjct: 222 EMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMY 281

Query: 248 ----NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
               ++ + +++F  +  +N+VSWN MI  Y  N  P EA+ ++ +M   G++P  +SV 
Sbjct: 282 AKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVM 341

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
             L AC DL  L  GR IH+      L  N+ + N+L+ MY KC  +  A ++F +++ +
Sbjct: 342 GALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSR 401

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
            +VSW +MI  +  +G+  DA+  FS+M    + PD+  +VSV++A +   +    ++  
Sbjct: 402 TLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIH 461

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV-------- 475
            ++     L   +     LVD+  + G +  A  LI  M  E +   W +++        
Sbjct: 462 GVVMRSC-LDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTHGF 519

Query: 476 --AACCLYSNMDIGILAADHIFHLA 498
             AA  L+  M  G +  + +  L+
Sbjct: 520 GKAALELFEEMQKGTIKPNGVTFLS 544


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 173/530 (32%), Positives = 282/530 (53%), Gaps = 45/530 (8%)

Query: 23  STQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD 82
           ST YT  S  AC     +   ++  K+LHAQ+I N   H +P +   L+  Y   G   +
Sbjct: 290 STTYTS-SLTACA----RLSSLRWGKQLHAQVIRNLP-HIDPYVASALVELYAKSGCFKE 343

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
            + VF+ + ++N V + VLI  ++    + +++ ++  M       D +    ++  C  
Sbjct: 344 AKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCS 403

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
              L +G Q+H   +K G    +   N L++MY KC  L+ A  +   M  KD+V+W SM
Sbjct: 404 RMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSM 463

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK 262
           +  Y+Q G                                     NV   +E F  +  K
Sbjct: 464 ITAYSQVG-------------------------------------NVAKAREFFDGMSEK 486

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLY-LQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           N+++WN M+  Y  +    + + +Y + +    + P+ ++  ++   C DL A  LG +I
Sbjct: 487 NVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQI 546

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
                +  L  +  + NA++ MY+KCG + EAR VFD +  +D+VSW +MI+ Y   G G
Sbjct: 547 IGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMG 606

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
             A+ +F  +L  G  PD I++V+VLS CSH+GL++EG++YF +M   + + P +EHF+C
Sbjct: 607 KQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSC 666

Query: 442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501
           +VDLLGRAG + EA DLI  MPM+P   +WG+L++AC ++ N ++  LAA H+F L    
Sbjct: 667 MVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPD 726

Query: 502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           SG Y+L++ IYA AG+  D  ++RK M  KGIKK PG S +E++++V + 
Sbjct: 727 SGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVF 776



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 157/342 (45%), Gaps = 38/342 (11%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD-P 128
           ++  Y   G++ D   +F  +  ++V  +N L+  Y  +  Y  +L  + +M   G   P
Sbjct: 97  MLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWP 156

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           + +T  C +K+C       + LQ+   V K     +      LV M+ +CG +  A R+ 
Sbjct: 157 NAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLF 216

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
             +    +   NSM+AGY +    D AL                                
Sbjct: 217 VRIKEPTMFCRNSMLAGYVKTYGVDHAL-------------------------------- 244

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
                E+F  +  +++VSWN+M++  + +    EA+D+ + M+  G+  ++ +  S L A
Sbjct: 245 -----ELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTA 299

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  LS+L  G+++H  V R     +  + +ALV++YAK G   EA+ VF+ +  ++ V+W
Sbjct: 300 CARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAW 359

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
           T +IS +   G   ++V LF++M    +  D  A  +++S C
Sbjct: 360 TVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGC 401



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 112/469 (23%), Positives = 194/469 (41%), Gaps = 114/469 (24%)

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL-NDMPSKD 195
           L++C    +L     +H  +V VGL   +F  N L+  Y  CG L +ARR+L  D+   +
Sbjct: 31  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPN 90

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM 255
           V+T N M+ GYA+ GR  +A+                                     E+
Sbjct: 91  VITHNVMLNGYAKLGRLSDAV-------------------------------------EL 113

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE-PNAISVASVLPACGDLSA 314
           F ++  +++ SWN +++ Y  +     +++ +L M   G   PNA ++A  + +CG L  
Sbjct: 114 FGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGW 173

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT----------------------- 351
             L  ++   V++   Q +  +  ALVDM+ +CG++                        
Sbjct: 174 HSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAG 233

Query: 352 --------EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
                    A  +FD M  +DVVSW  M+SA   SG+  +A+ +   M   G+  DS  +
Sbjct: 234 YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 293

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEA------ 455
            S L+AC+    L  G+   ++  +  + +P I+ +  + LV+L  ++G  +EA      
Sbjct: 294 TSSLTACARLSSLRWGK---QLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNS 350

Query: 456 -------------------------YDLIKQMP---MEPNERIWGSLVAACCLYSNMDIG 487
                                     +L  QM    M  ++    +L++ CC  S MD+ 
Sbjct: 351 LHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCC--SRMDLC 408

Query: 488 ILAADHIFHLAPNQSGYYVL---LSNIYAKAGRWGDVKRVRKFMNSKGI 533
           +    H   L   Q    V+   L ++YAK       + + +FMN K I
Sbjct: 409 LGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDI 457



 Score = 39.7 bits (91), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 35/210 (16%)

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR------ 354
           + A  L +CG   AL   R +H  +    L   + L+N L+  Y  CG+L++AR      
Sbjct: 26  AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 85

Query: 355 --------------------------TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
                                      +F +M  +DV SW +++S Y  S Q   ++  F
Sbjct: 86  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 145

Query: 389 SKMLMSG-LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
             M  SG   P++      + +C   G           M +++      E  A LVD+  
Sbjct: 146 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLA-MVQKFDSQDDSEVAAALVDMFV 204

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           R G V+ A  L  ++  EP      S++A 
Sbjct: 205 RCGAVDLASRLFVRIK-EPTMFCRNSMLAG 233


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 181/521 (34%), Positives = 289/521 (55%), Gaps = 37/521 (7%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +   L+  Y   G +   R +FD++  +++  +N +I   + N     AL V   M + G
Sbjct: 209 VAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 268

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            + D  T   +L  C+    +     IH  V+K GL++ LF  N L+ MY K G L +A+
Sbjct: 269 INMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQ 328

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           +V   M  +DVV+WNS++A Y QN     A     +M+   ++PD  T+ SL      + 
Sbjct: 329 KVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSR 388

Query: 246 P------------------ENVL---SVKEMFLKL---DN----------KNLVSWNVMI 271
                              E V+   +V +M+ KL   D+          K++VSWN +I
Sbjct: 389 DYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLI 448

Query: 272 AVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
           + Y  N + +EA+++Y  M E   I+ N  +  S+L A   + AL  G +IH ++ +  L
Sbjct: 449 SGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNL 508

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
             ++ +   L+D+Y KCG L +A  +F Q+  +  V W ++IS +G+ G G  A+ LF +
Sbjct: 509 HLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFRE 568

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450
           M   G+ PD + F+S+LSACSH+GL++EG+++F +M E Y + P ++H+ C+VDLLGRAG
Sbjct: 569 MQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQE-YGIKPSLKHYGCMVDLLGRAG 627

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSN 510
            +E AYD IK MP+ P+  IWG+L+ AC ++ N+++G  A+D +F +     GYYVLLSN
Sbjct: 628 FLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSN 687

Query: 511 IYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQII 550
           IYA  G+W  V +VR     +G+KK PG +S+E+N +V I 
Sbjct: 688 IYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIF 728



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 142/471 (30%), Positives = 247/471 (52%), Gaps = 45/471 (9%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N + D        K+LHA ++++  + SN  I ++L+  Y + G +  +R  FD+I  K+
Sbjct: 80  NSLFDSCTKTLLAKRLHALLVVSGKIQSN-FISIRLVNLYASLGDVSLSRGTFDQIQRKD 138

Query: 95  VVFFNVLIRSYVNNYLYYDALH-VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           V  +N +I +YV N  + +A+   Y+ + V  F  D YT+P VLKAC    +L+ G +IH
Sbjct: 139 VYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC---QTLVDGRKIH 195

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
           C V K+G  +++F    L+ MY + G +  AR + +DMP +D+ +WN+M++G  QNG   
Sbjct: 196 CWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAA 255

Query: 214 EALDVCREMESLRIKPDADTMASLLP------SVTNTSPENVLSVKE------------- 254
           +ALDV  EM    I  D+ T+AS+LP       ++  +  ++  +K              
Sbjct: 256 QALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALI 315

Query: 255 -MFLKLDN-------------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
            M+ K  N             +++VSWN +IA Y  N  P  A   + +M+++G+EP+ +
Sbjct: 316 NMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLL 375

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKK-LQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           ++ S+             R +H ++ R+  L   + + NA++DMYAK G +  A  VF+ 
Sbjct: 376 TLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNL 435

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM-SGLCPDSIAFVSVLSACSHAGLLEE 418
           +  +DVVSW ++IS Y  +G   +A+ ++  M     +  +   +VS+L+A +H G L++
Sbjct: 436 IPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQ 495

Query: 419 GRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
           G    +I     K    ++ F   CL+DL G+ G++ +A  L  Q+P E +
Sbjct: 496 G---MRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESS 543



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 12/197 (6%)

Query: 37  ILDKYPDIKTLK---KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
           IL  Y  +  L+   ++H  +I   +LH +  +G  L+  YG CG++VD   +F ++  +
Sbjct: 483 ILAAYAHVGALQQGMRIHGHLI-KTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRE 541

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           + V +N +I  +  +     AL +++ M   G  PD  T+  +L ACS S  +  G    
Sbjct: 542 SSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFF 601

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVA-----GYA 207
             + + G+  +L +   +V + G+ G L+ A   + DMP   D   W +++      G  
Sbjct: 602 HLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNI 661

Query: 208 QNGRFDEALDVCREMES 224
           + G+F  A D   E++S
Sbjct: 662 ELGKF--ASDRLFEVDS 676


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 176/517 (34%), Positives = 288/517 (55%), Gaps = 40/517 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDP 128
           L + Y    ++   R VFD + + + V +N L+     +    +A+  +  M   G   P
Sbjct: 155 LAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMVCDGSVRP 210

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D  T   VL A +    + +G  +H    K GL  +     GL+++Y KCG ++ AR + 
Sbjct: 211 DATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLF 270

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP--------- 239
           + M   D+V +N++++GY+ NG    ++++  E+ +L + P++ T+ +L+P         
Sbjct: 271 DMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDL 330

Query: 240 ------------SVTNTSP------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
                         T  SP             ++ S ++ F  +  K + SWN MI+ YA
Sbjct: 331 LAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYA 390

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            N +   AV L+ QM    + PN I+++S L AC  L AL LG+ +HR +  + L+PN+ 
Sbjct: 391 QNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVY 450

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           +  AL+DMYAKCGS++EAR +F+ M  ++VVSW +MI+ YG+ GQG +A+ L+  ML + 
Sbjct: 451 VMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAH 510

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           L P S  F+SVL ACSH GL+EEG   F+ MT+ Y + P IEH  C+VDLLGRAG+++EA
Sbjct: 511 LLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEA 570

Query: 456 YDLIKQMPMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           ++LI + P       +WG+L+ AC ++ + D+  LA+  +F L P  SGYYVLLSN++  
Sbjct: 571 FELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTS 630

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
             ++ +   VR+   S+ + K PG + +E+ ++  + 
Sbjct: 631 KKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVF 667



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 171/354 (48%), Gaps = 40/354 (11%)

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD-VCREM 222
           + F  + L  +Y     +  AR+V + +PS D V WN+++AG + +    EA++   R +
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMV 203

Query: 223 ESLRIKPDADTMASLLPSVTNTSP-------------------ENVL------------- 250
               ++PDA T+AS+LP+    +                    E+VL             
Sbjct: 204 CDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDV 263

Query: 251 -SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            S + +F  ++  +LV++N +I+ Y+ N M   +V+L+ ++   G+ PN+ ++ +++P  
Sbjct: 264 ESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVH 323

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
                 LL + +H +V +     N  +  A+  ++ +   +  AR  FD M  + + SW 
Sbjct: 324 SPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWN 383

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           +MIS Y  +G    AVALF +M+   + P+ I   S LSAC+  G L  G++  +I+TE+
Sbjct: 384 AMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEE 443

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
             L P +     L+D+  + G + EA  +   M  + N   W +++A   L+  
Sbjct: 444 -DLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNK-NVVSWNAMIAGYGLHGQ 495



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 93/185 (50%)

Query: 54  IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
            ++     +N  +   +   +     M   R  FD +  K +  +N +I  Y  N L   
Sbjct: 338 FVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEM 397

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           A+ +++ M      P+  T    L AC+   +L +G  +H  + +  L+ N++    L+ 
Sbjct: 398 AVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALID 457

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MY KCG + EARR+ N M +K+VV+WN+M+AGY  +G+  EAL + ++M    + P + T
Sbjct: 458 MYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSAT 517

Query: 234 MASLL 238
             S+L
Sbjct: 518 FLSVL 522



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 8/153 (5%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K LH +II  + L  N  +   L+  Y  CG + + R +F+ + NKNVV +N +I  Y  
Sbjct: 434 KWLH-RIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGL 492

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +    +AL +YK+M      P   T+  VL ACS    +  G ++  S+     DY +  
Sbjct: 493 HGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTD---DYAINP 549

Query: 168 G----NGLVAMYGKCGCLKEARRVLNDMPSKDV 196
           G      +V + G+ G LKEA  ++++ P   V
Sbjct: 550 GIEHCTCMVDLLGRAGQLKEAFELISEFPKSAV 582


>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
          Length = 436

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 172/440 (39%), Positives = 261/440 (59%), Gaps = 41/440 (9%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M  +G  PD Y++P VLKAC+  + L  G +IH S +K+G+  ++F  N L++ +  CG 
Sbjct: 1   MLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGA 60

Query: 181 LKEARRVLNDMPS--KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238
           ++ AR V + +P+  +DVV+WNSM++GY Q+ R++ AL V                    
Sbjct: 61  VEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKV-------------------- 100

Query: 239 PSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                            F ++ ++N V W  MIA YA + +  EA++L+ +M++ G   +
Sbjct: 101 -----------------FDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAAD 143

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
           A ++A VL ACG   AL  GR IH Y ER  ++ +L   NAL+ MY+KCG + +A  +F 
Sbjct: 144 AATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFH 203

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM-LMSGLCPDSIAFVSVLSACSHAGLLE 417
            +   D+ SW+++IS   M+G+   A+ LFS+M ++S + P+ I F+ VL AC+H G ++
Sbjct: 204 GLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVD 263

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           +G YYF  MT+ Y L P IEH+ C+VDLLGRA  + EA   I+ +P++P+  IW SL+ A
Sbjct: 264 KGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFA 323

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
           C  + N+++   AA  I  L P + G  VLLSN+YA A RWGDVKRVRK M ++ IKK P
Sbjct: 324 CRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDMATQRIKKQP 383

Query: 538 GAS-VEMNDQVQIIALPLRS 556
           G S VE++  V  + +  RS
Sbjct: 384 GCSFVEIDGLVHELFVADRS 403



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 86/154 (55%), Gaps = 1/154 (0%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VFD I ++N V +  +I  Y  + L+ +A+ +++ M + GF  D  T  CVL AC    +
Sbjct: 100 VFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGA 159

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           L  G  IH    +  ++ +L   N L+ MY KCG +++A  + + +   D+ +W+++++G
Sbjct: 160 LAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISG 219

Query: 206 YAQNGRFDEALDVCREMESLR-IKPDADTMASLL 238
            A NG  D+AL +  +ME +  I+P+  T   +L
Sbjct: 220 LAMNGESDKALHLFSQMEMISDIRPNEITFLGVL 253



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 9/163 (5%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS-VHGFDP 128
           L+  Y  CG +     +F  +T  ++  ++ +I     N     ALH++  M  +    P
Sbjct: 185 LIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRP 244

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG----NGLVAMYGKCGCLKEA 184
           +  T+  VL AC+    +  GL    ++ ++   YNL  G      +V + G+   L EA
Sbjct: 245 NEITFLGVLCACNHGGFVDKGLYYFNAMTQI---YNLTPGIEHYGCMVDLLGRANLLVEA 301

Query: 185 RRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
            + +  +P + DVV W S++     +G  + A    +++E L 
Sbjct: 302 EKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELE 344


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 159/481 (33%), Positives = 277/481 (57%), Gaps = 38/481 (7%)

Query: 74  YGACGQMVDTRHVFD--EITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDC 130
           Y   G +   + +FD  E+  K+ + +N +I  Y +N L+ +AL +++++ +  G + D 
Sbjct: 218 YCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADS 277

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
           +T   VL AC+   SL  G ++H   V  GL +N F G  LV MY KC  LK A+   + 
Sbjct: 278 FTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDG 337

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL 250
           +  +D  TWN +++GYA   + +   ++ ++M+    +P                     
Sbjct: 338 VTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEP--------------------- 376

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
                       N+ +WN +I+ +  N     A+ L+ +M+   + P+  +V  +LPAC 
Sbjct: 377 ------------NVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACA 424

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
            L+ +  G+++H +  R+  + ++ +  ALVDMYAKCGS+  A  V++++   ++VS  +
Sbjct: 425 RLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNA 484

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           M++AY M G G + +ALF  ML +G  PD + F+SVLS+C HAG +E G  +F +MT  Y
Sbjct: 485 MLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMT-YY 543

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            + P ++H+ C+VDLL RAG+++EAY+L+K++P +P+  +WG+L+  C ++ N+++G +A
Sbjct: 544 NVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIA 603

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQI 549
           A+ +  L PN +G YVLL+N+YA AGRW D+ R R+ +  +G+ K PG S +E  + + +
Sbjct: 604 AESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWIEDREDIHV 663

Query: 550 I 550
            
Sbjct: 664 F 664



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 205/447 (45%), Gaps = 95/447 (21%)

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D  TY  +L++C    +L +G Q+H   +K G   + F    L+ MYG+ GCL +A  V 
Sbjct: 61  DSSTYASLLESC---RTLNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVF 117

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEA-------------------------------LD 217
             MP +++ +W ++++ +  +G F+EA                               L+
Sbjct: 118 VKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLE 177

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSPENVLS----------------VKEMF--LKL 259
           + R++  + IK  AD M S L   +  S +NV+S                 KE+F  ++L
Sbjct: 178 LGRQLHGVVIKRCAD-MGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMEL 236

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLY--LQMEVHGIEPNAISVASVLPACGDLSALLL 317
             K+ +SWN MI+ YA+N +  EA+ ++  L ME  GIE ++ ++ SVL AC D+++L  
Sbjct: 237 VGKDTISWNSMISGYADNLLFDEALSMFRDLLME-EGIEADSFTLGSVLAACADMASLRR 295

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG- 376
           G+++H     + L  N  +  ALV+MY+KC  L  A+  FD +  +D  +W  +IS Y  
Sbjct: 296 GKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYAC 355

Query: 377 -------------MSGQGYD---------------------AVALFSKMLMSGLCPDSIA 402
                        M G G++                     A+ LF++M  S L PD   
Sbjct: 356 CNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYT 415

Query: 403 FVSVLSACSHAGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
              +L AC+    +  G+  +   + + Y+L   I   A LVD+  + G ++ A  +  +
Sbjct: 416 VGIILPACARLATIARGKQVHAHSIRQGYELDVHIG--AALVDMYAKCGSIKHAMQVYNR 473

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGI 488
           +   PN     +++ A  ++ + D GI
Sbjct: 474 IS-NPNLVSQNAMLTAYAMHGHGDEGI 499



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 2/159 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++HA  I  Q    +  IG  L+  Y  CG +     V++ I+N N+V  N ++ +Y  
Sbjct: 433 KQVHAHSI-RQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAM 491

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +    + + +++NM  +GF PD  T+  VL +C  + ++  G +    +    +  +L +
Sbjct: 492 HGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKH 551

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAG 205
              +V +  + G L EA  ++  +P K D V W +++ G
Sbjct: 552 YTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGG 590


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 189/553 (34%), Positives = 295/553 (53%), Gaps = 44/553 (7%)

Query: 24  TQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT 83
           T  ++LS  AC     KY D+    +LH+ II N+   SN  +G  L+  Y   G + D 
Sbjct: 430 TYSSILSACACL----KYLDLG--HQLHSVIIKNK-FASNLFVGNALVDMYAKSGALEDA 482

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
           R  F+ I N++ V +NV+I  YV      +A H+++ M++ G  PD  +   +L AC+  
Sbjct: 483 RQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASV 542

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
             L  G Q+HC  VK G +  L++G+ L+ MY KCG +  A ++L  MP + VV+ N+++
Sbjct: 543 RGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALI 602

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS-----VKEMFLK 258
           AGYAQ    ++A+++ R+M    I     T ASLL +       N+       + +M L+
Sbjct: 603 AGYAQI-NLEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQ 661

Query: 259 LDN------------------------------KNLVSWNVMIAVYANNSMPAEAVDLYL 288
           LD+                              K+ V W  MI+  + N     A+ LY 
Sbjct: 662 LDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYK 721

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           +M    + P+  +  S L AC  +S++  G + H  +       +    +ALVDMYAKCG
Sbjct: 722 EMRSCNVLPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCG 781

Query: 349 SLTEARTVFDQM-RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
            +  +  VF +M R +DV+SW SMI  +  +G   DA+ +F +M  S + PD + F+ VL
Sbjct: 782 DVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVL 841

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
           +ACSH+G + EGR  F +M   Y + PR +H AC+VDLLGR G ++EA + I ++  EP+
Sbjct: 842 TACSHSGRVSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFEPD 901

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527
            ++W +++ AC ++ +   G  AA+ +  L P  S  YVLLSNIYA +G W +V  +R+ 
Sbjct: 902 AKVWATMLGACRIHGDDIRGQQAAEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLRRE 961

Query: 528 MNSKGIKKMPGAS 540
           M  KG+KK+PG S
Sbjct: 962 MREKGVKKLPGCS 974



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 166/601 (27%), Positives = 271/601 (45%), Gaps = 88/601 (14%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           +HA+ +  Q LHSN  +G  L+  Y  CG+M   + VFD +  +NVV +N ++  YV N 
Sbjct: 349 VHAEAL-KQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNG 407

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
              + + ++ NM   GF PD +TY  +L AC+    L +G Q+H  ++K     NLF GN
Sbjct: 408 YANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGN 467

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            LV MY K G L++AR+    + ++D V+WN ++ GY Q     EA  + R M  L I P
Sbjct: 468 ALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILP 527

Query: 230 DADTMASLLPSVTN----------------TSPENVL----SVKEMFLK----------- 258
           D  ++AS+L +  +                T  E  L    S+ +M+ K           
Sbjct: 528 DEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKIL 587

Query: 259 --LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
             +  +++VS N +IA YA  ++  +AV+L+  M V GI    I+ AS+L AC +   L 
Sbjct: 588 ACMPERSVVSMNALIAGYAQINLE-QAVNLFRDMLVEGINSTEITFASLLDACHEQQKLN 646

Query: 317 LGRKIHRYVERKKLQPNLR-LENALVDMYAKCGSLTEARTVFDQMRC-QDVVSWTSMISA 374
           LGR+IH  + +  LQ +   L  +L+ MY      T+A  +F +    +  V WT+MIS 
Sbjct: 647 LGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISG 706

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
              +     A+ L+ +M    + PD   FVS L AC+    +++G       TE + L+ 
Sbjct: 707 LSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDG-------TETHSLIF 759

Query: 435 RIEH------FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA----------AC 478
                      + LVD+  + G V+ +  + K+M  + +   W S++           A 
Sbjct: 760 HTGFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDAL 819

Query: 479 CLYSNMDIGILAADHIFHL----APNQSG-------YYVLLSNIYAKA------------ 515
            ++  M    +  D +  L    A + SG        + ++ N+Y               
Sbjct: 820 RVFDEMKQSHVTPDDVTFLGVLTACSHSGRVSEGRLIFDMMVNLYGMQPRADHCACMVDL 879

Query: 516 -GRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQIIALPLR----SSKCLTTGPKNVPPI 570
            GRWG +K   +F+N    +        M    +I    +R    + K +   P+N  P 
Sbjct: 880 LGRWGSLKEAEEFINKLNFEPDAKVWATMLGACRIHGDDIRGQQAAEKLIELEPQNSSPY 939

Query: 571 V 571
           V
Sbjct: 940 V 940



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 215/418 (51%), Gaps = 7/418 (1%)

Query: 46  TLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           T K +HAQ +      S   +G  ++  Y  C  +      F ++ +K+++ +N ++  +
Sbjct: 77  TNKIIHAQSL-KLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMH 135

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
                 +  +  +  +   G  P+ +T+  VL +C+    +  G Q+HC+VVK+G +   
Sbjct: 136 SKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESIS 195

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           +    L+ MY KC  L +AR + +     D V+W SM+ GY + G  +EA+ V +EME +
Sbjct: 196 YCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKV 255

Query: 226 RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285
             +PD     +++ +  +    +  +  ++F ++ N+N+V+WN+MI+ +A      EA++
Sbjct: 256 GQEPDQVAFVTVINAYVDLGRLD--NASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIE 313

Query: 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
            +  M   GI+    ++ SVL A   L+AL  G  +H    ++ L  N+ + ++LV MYA
Sbjct: 314 FFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYA 373

Query: 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
           KCG +  A+ VFD +  Q+VV W +M+  Y  +G   + + LF  M   G  PD   + S
Sbjct: 374 KCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSS 433

Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA---YDLIK 460
           +LSAC+    L+ G     ++ +  K    +     LVD+  ++G +E+A   ++LI+
Sbjct: 434 ILSACACLKYLDLGHQLHSVIIKN-KFASNLFVGNALVDMYAKSGALEDARQQFELIR 490



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/452 (21%), Positives = 176/452 (38%), Gaps = 112/452 (24%)

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG- 210
           IH   +K+G       GN +V +Y KC  +  A R    +  KD++ WNS+++ +++ G 
Sbjct: 81  IHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGF 140

Query: 211 ---------------------RFDEALDVCREMESLR---------IKPDADTMASLLPS 240
                                 F   L  C  +E ++         +K   ++++    +
Sbjct: 141 PHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGA 200

Query: 241 VTNTSPE-NVLS-VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
           +     + N L+  + +F      + VSW  MI  Y    +P EAV ++ +ME  G EP+
Sbjct: 201 LIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPD 260

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
            ++  +V+                               NA VD+    G L  A  +F 
Sbjct: 261 QVAFVTVI-------------------------------NAYVDL----GRLDNASDLFS 285

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS------- 411
           +M  ++VV+W  MIS +   G G +A+  F  M  +G+        SVLSA +       
Sbjct: 286 RMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDF 345

Query: 412 ----HAGLLEEGR----YYFKIMTEQYKLVPRIEHFACLVDLL----------------- 446
               HA  L++G     Y    +   Y    ++E    + D L                 
Sbjct: 346 GLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQ 405

Query: 447 -GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH--LAPNQSG 503
            G A +V E +  +K     P++  + S+++AC     +D+G     H  H  +  N+  
Sbjct: 406 NGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLG-----HQLHSVIIKNKFA 460

Query: 504 YYVLLSN----IYAKAGRWGDVKRVRKFMNSK 531
             + + N    +YAK+G   D ++  + + ++
Sbjct: 461 SNLFVGNALVDMYAKSGALEDARQQFELIRNR 492


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 179/552 (32%), Positives = 294/552 (53%), Gaps = 42/552 (7%)

Query: 28  LLSGDACNDILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLK--LMRTYGACGQMVD 82
           L   +A   ++  Y   K L   K+LHA +I   +    P   L   L+  Y  CG++  
Sbjct: 2   LRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGY---TPCTFLTNHLVNMYSKCGELDH 58

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
              +FD +  +N+V +  +I     N  + +A+  +  M + G  P  + +   ++AC+ 
Sbjct: 59  ALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACAS 118

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
             S+ +G Q+HC  +K G+   LF G+ L  MY KCG + +A +V  +MP KD V+W +M
Sbjct: 119 LGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAM 178

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL----------------PSVTNTSP 246
           + GY++ G F+EAL   ++M    +  D   + S L                 SV     
Sbjct: 179 IDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGF 238

Query: 247 ENVL----SVKEMFLKLDN--------------KNLVSWNVMIAVYANNSMPAEAVDLYL 288
           E+ +    ++ +M+ K  +              +N+VS+  +I  Y       + + +++
Sbjct: 239 ESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFV 298

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           ++   GIEPN  + +S++ AC + +AL  G ++H  V +     +  + + LVDMY KCG
Sbjct: 299 ELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCG 358

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
            L  A   FD++     ++W S++S +G  G G DA+  F +M+  G+ P++I F+S+L+
Sbjct: 359 LLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLT 418

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
            CSHAGL+EEG  YF  M + Y +VP  EH++C++DLLGRAG+++EA + I +MP EPN 
Sbjct: 419 GCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNA 478

Query: 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
             W S + AC ++ + ++G LAA+ +  L P  SG  VLLSNIYA   +W DV+ VR  M
Sbjct: 479 FGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRM 538

Query: 529 NSKGIKKMPGAS 540
               +KK+PG S
Sbjct: 539 RDGNVKKLPGYS 550


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/505 (32%), Positives = 273/505 (54%), Gaps = 40/505 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LH Q+I N   H +P +   ++  Y  CG   + + VF  + ++N V + VLI  ++ 
Sbjct: 311 KQLHVQVIRNLP-HIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQ 369

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
              + +++ ++  M       D +    ++  C  +  + +G Q+H   +K G    +  
Sbjct: 370 YGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVV 429

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L++MY KCG L+ A  + N M  +D+V+W  M+  Y+Q G                 
Sbjct: 430 SNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVG----------------- 472

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
                               N+   +E F  +  +N+++WN M+  Y  +    + + +Y
Sbjct: 473 --------------------NIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMY 512

Query: 288 LQMEVH-GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
             M     + P+ ++  ++   C D+ A  LG +I  +  +  L  +  + NA++ MY+K
Sbjct: 513 SDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSK 572

Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
           CG ++EAR  FD +  +D+VSW +MI+ Y   G G  A+ +F  +L  G  PD I++V+V
Sbjct: 573 CGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAV 632

Query: 407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP 466
           LS CSH+GL+EEG++YF +M   + + P +EHF+C+VDLLGRAG + EA +LI +MPM+P
Sbjct: 633 LSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKP 692

Query: 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526
              +WG+L++AC  + N D+  LAA H+F L    SG Y+LL+ +YA AG+  D  +VRK
Sbjct: 693 TAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRK 752

Query: 527 FMNSKGIKKMPGAS-VEMNDQVQII 550
            M  KGIKK PG S +E+N++V + 
Sbjct: 753 LMRDKGIKKSPGYSWMEVNNRVHVF 777



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 164/342 (47%), Gaps = 38/342 (11%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD-P 128
           +M  Y   G + D   +F  +  ++V  +N ++  Y  +  + +AL ++ +M   G   P
Sbjct: 98  MMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLP 157

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           + +T+ CV+K+C       V LQ+   + K     +      LV M  +CG +  A +  
Sbjct: 158 NAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQF 217

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
           + + +  ++  NSM+ GYA++   D AL++ + M                       PE 
Sbjct: 218 SRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSM-----------------------PE- 253

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
                        +++VSWN++I+  + +    EA+D+ + M   G+ P++ +  S L A
Sbjct: 254 -------------RDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTA 300

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  LS+L  G+++H  V R     +  + +A+V++YAKCG   EA+ VF  +R ++ VSW
Sbjct: 301 CARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSW 360

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
           T +I  +   G   ++V LF++M    +  D  A  +++S C
Sbjct: 361 TVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGC 402



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 113/473 (23%), Positives = 193/473 (40%), Gaps = 112/473 (23%)

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND-MPSKD 195
           L++C   ++L     +H  ++ VGL   +F  N L+  Y  CG L +AR +L D +   +
Sbjct: 32  LRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPN 91

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM 255
           V+T N M+ GYA+ G   +A+                                     E+
Sbjct: 92  VITHNIMMNGYAKLGSLSDAV-------------------------------------EL 114

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE-PNAISVASVLPACGDLSA 314
           F ++  +++ SWN +++ Y  +     A+D+++ M   G   PNA +   V+ +CG L  
Sbjct: 115 FGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGW 174

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT----------------------- 351
             +  ++   + +   Q +  ++ ALVDM  +CG++                        
Sbjct: 175 HEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVG 234

Query: 352 --------EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
                    A  +F  M  +DVVSW  +ISA   SG+  +A+ +   M   G+ PDS  +
Sbjct: 235 YAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTY 294

Query: 404 VSVLSACSHAGLLEEGR---------------YYFKIMTEQY------KLVPRIEHFACL 442
            S L+AC+    LE G+               Y    M E Y      K   R+  F+ L
Sbjct: 295 TSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRV--FSSL 352

Query: 443 VD--------LLG---RAGKVEEAYDLIKQMP---MEPNERIWGSLVAACCLYSNMDIGI 488
            D        L+G   + G   E+ +L  QM    M  ++    +L++ CC  + MDI +
Sbjct: 353 RDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCC--NTMDICL 410

Query: 489 LAADHIFHLAPNQSGYYVL---LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
            +  H   L    +   V+   L ++YAK G   + + +  FM  + I    G
Sbjct: 411 GSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTG 463



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 36/189 (19%)

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART----- 355
           ++A  L +CG  SAL   R +H  +    L   + L+N L+  Y  CG+L++AR      
Sbjct: 27  ALADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDE 86

Query: 356 ---------------------------VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
                                      +F +M  +DV SW +++S Y  SGQ  +A+ +F
Sbjct: 87  ITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIF 146

Query: 389 SKMLMSG-LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE-QYKLVPRIEHFACLVDLL 446
             M  +G   P++  F  V+ +C   G  E       ++++   +  P ++    LVD+L
Sbjct: 147 VSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQ--TALVDML 204

Query: 447 GRAGKVEEA 455
            R G ++ A
Sbjct: 205 VRCGAMDFA 213


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 177/519 (34%), Positives = 285/519 (54%), Gaps = 36/519 (6%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           IG  L+  Y    ++ + R VF ++  K+ V +N +I  Y     +  ++ ++ +M + G
Sbjct: 259 IGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-IDG 317

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           F PD  +    ++AC  S  L VG  +H  ++  G + +    N L+ MY KCG L  A+
Sbjct: 318 FVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQ 377

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            V +    KD VTWNS++ GY Q+G + E L+  + M+  R KPD+ T   LL   +  +
Sbjct: 378 EVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLA 436

Query: 246 PEN-----------------------VLSVK----------EMFLKLDNKNLVSWNVMIA 272
             N                       +L V           ++F  +   +++SWN +IA
Sbjct: 437 DINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIA 496

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
              +         +  +M   G+ P+  +V  +LP C  L+    G++IH Y+ +   + 
Sbjct: 497 SSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFES 556

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           N+ + NAL++MY+KCGSL     VF  M+ +DVV+WT++ISA+GM G+G  A+  F  M 
Sbjct: 557 NVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDME 616

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
           +SG+ PDS+AF++ + ACSH+G+++EG  +F  M   Y L PR+EH+AC+VDLL R+G +
Sbjct: 617 LSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLL 676

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
            +A + I  MPM+P+  +WG+L++AC    N +I    +  I  L  + +GYYVL+SNIY
Sbjct: 677 AQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIY 736

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           A  G+W  VK VR  M +KG+KK PG+S +E+  +V + 
Sbjct: 737 ATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVF 775



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 145/521 (27%), Positives = 247/521 (47%), Gaps = 57/521 (10%)

Query: 7   LCRHFSTT-KPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPS 65
            C +F+ T +P Q  + S+    LS           P ++T+  L    II   L  +  
Sbjct: 6   FCSNFNNTPEPSQEFLRSSLLKTLSS------AKNTPQLRTVHSL----IITSGLSLSVI 55

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEIT-NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
              KL+  Y      + +  VF  I+   NV  +N +IR+  +N L+  AL  Y  M   
Sbjct: 56  FSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREK 115

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
              PD +T+P V+ +C+    L +G  +H   +++G + +L+ GN L+ MY +   L  A
Sbjct: 116 KLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNA 175

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           R V  +M ++D V+WNS+++GY  NG +++ALD+  +     + PD  TM+S+L +  + 
Sbjct: 176 RYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSL 235

Query: 245 SP---------------------------------ENVLSVKEMFLKLDNKNLVSWNVMI 271
                                              E +   + +F K+  K+ V+WN MI
Sbjct: 236 MAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMI 295

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
             YA       +V L++ M + G  P+ +S+ S + ACG    L +G+ +H+Y+     +
Sbjct: 296 CGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFE 354

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            +    N L+DMYAKCG L  A+ VFD  +C+D V+W S+I+ Y  SG   + +  F KM
Sbjct: 355 CDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESF-KM 413

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA--CLVDLLGRA 449
           +     PDS+ FV +LS  S    + +GR    I  +  K     E      L+D+  + 
Sbjct: 414 MKMERKPDSVTFVLLLSIFSQLADINQGR---GIHCDVIKFGFEAELIIGNSLLDVYAKC 470

Query: 450 GKVEEAYDLIKQMP-MEPNERI-WGSLVAACCLYSNMDIGI 488
           G+++   DL+K    M  ++ I W +++A+   + +  +G 
Sbjct: 471 GEMD---DLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGF 508



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 232/491 (47%), Gaps = 58/491 (11%)

Query: 32  DACNDILDKYPDIKTLKKLHAQIIINQH-----LHSNPSIGLKLMRTYGACGQMVDTRHV 86
           ++C  ILD          L    I+++H       S+  IG  L+  Y     + + R+V
Sbjct: 129 NSCARILD----------LELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYV 178

Query: 87  FDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL 146
           F+E++N++ V +N LI  Y +N  + DAL +Y    + G  PDC+T   VL AC    ++
Sbjct: 179 FEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAV 238

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY 206
             G+ +H  + K+G+  ++  GNGL++MY K   L+EARRV + M  KD VTWN+M+ GY
Sbjct: 239 KEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGY 298

Query: 207 AQNGRFDEALDV---------------------CREMESLRIKP-----------DADTM 234
           AQ GR + ++ +                     C +   L++             + DT+
Sbjct: 299 AQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTV 358

Query: 235 ASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
           A  +         ++L+ +E+F     K+ V+WN +I  Y  +    E ++ +  M++  
Sbjct: 359 ACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER 418

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
            +P++++   +L     L+ +  GR IH  V +   +  L + N+L+D+YAKCG + +  
Sbjct: 419 -KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLL 477

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            VF  M   D++SW ++I++            + ++M   GL PD    + +L  CS   
Sbjct: 478 KVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLA 537

Query: 415 LLEEGR----YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI 470
           +  +G+    Y FK   E       +     L+++  + G +E    + K M  E +   
Sbjct: 538 VRRQGKEIHGYIFKSGFES-----NVPIGNALIEMYSKCGSLENCIKVFKYMK-EKDVVT 591

Query: 471 WGSLVAACCLY 481
           W +L++A  +Y
Sbjct: 592 WTALISAFGMY 602


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 198/597 (33%), Positives = 315/597 (52%), Gaps = 63/597 (10%)

Query: 6   LLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKT----------LKKLHAQII 55
           LL  +F   K V+ L L  Q   ++ DA   I ++ PD  T          L+KL    +
Sbjct: 73  LLRSYFLEGKWVETLSLFHQ---MNADA---ITEERPDNYTVSIALKSCSGLQKLELGKM 126

Query: 56  IN-----QHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYL 110
           I+     + + ++  +G  L+  Y  CGQM D   VF E   ++VV +  +I  Y  N  
Sbjct: 127 IHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGS 186

Query: 111 YYDALHVYKNMSV-HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
              AL  +  M V     PD  T      AC+  +   +G  +H  V + G D  L   N
Sbjct: 187 PELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLAN 246

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            ++ +YGK G ++ A  +  +MP KD+++W+SMVA YA NG    AL++  EM   RI+ 
Sbjct: 247 SILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIEL 306

Query: 230 DADTMASLLPSVTNTS------------------------------------PENVLSVK 253
           +  T+ S L +  ++S                                    P+N +   
Sbjct: 307 NRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAI--- 363

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           ++F ++  K++VSW V+ + YA   M  +++ ++  M  +G  P+AI++  +L A  +L 
Sbjct: 364 DLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELG 423

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
            +     +H +V +     N  +  +L+++YAKC S+  A  VF  MR +DVV+W+S+I+
Sbjct: 424 IVQQALCLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRKDVVTWSSIIA 483

Query: 374 AYGMSGQGYDAVALFSKML-MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           AYG  GQG +A+ LF +M   S + P+ + FVS+LSACSHAGL+EEG   F +M  +Y+L
Sbjct: 484 AYGFHGQGEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQL 543

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAAD 492
           +P  EH+  +VDLLGR G++++A D+I +MPM+    +WG+L+ AC ++ N+ IG LAA 
Sbjct: 544 MPNTEHYGIMVDLLGRMGELDKALDMINEMPMQAGPHVWGALLGACRIHQNIKIGELAAL 603

Query: 493 HIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           ++F L PN +GYY LLSNIY     W D  ++R  +     KK+ G S VE+ ++V 
Sbjct: 604 NLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRFKKIVGQSMVEIKNEVH 660



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 150/570 (26%), Positives = 256/570 (44%), Gaps = 87/570 (15%)

Query: 46  TLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           ++ +LH+Q +    L  +  +  KL   Y     +     +F+E   K V  +N L+RSY
Sbjct: 19  SIPQLHSQCL-KVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSY 77

Query: 106 VNNYLYYDALHVYKNMSVHGFD---PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
                + + L ++  M+        PD YT    LK+CSG   L +G  IH  + K  +D
Sbjct: 78  FLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKID 137

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++F G+ L+ +Y KCG + +A +V  + P +DVV W S++ GY QNG  + AL     M
Sbjct: 138 NDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRM 197

Query: 223 ESL-RIKPDADTMASLLPSVTNTSPEN--------------------------------- 248
             L ++ PD  T+ S   +    S  N                                 
Sbjct: 198 VVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGS 257

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           + S   +F ++  K+++SW+ M+A YA+N     A++L+ +M    IE N ++V S L A
Sbjct: 258 IRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRA 317

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C   S L  G+ IH+       + ++ +  AL+DMY KC S   A  +F++M  +DVVSW
Sbjct: 318 CASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSW 377

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG--------- 419
             + S Y   G  + ++ +F  ML  G  PD+IA V +L+A S  G++++          
Sbjct: 378 AVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQALCLHAFVSK 437

Query: 420 ------RYYFKIMTEQYKLVPRIEH---------------FACLVDLLGRAGKVEEAYDL 458
                  +    + E Y     I++               ++ ++   G  G+ EEA  L
Sbjct: 438 SGFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRKDVVTWSSIIAAYGFHGQGEEALKL 497

Query: 459 IKQMP----MEPNERIWGSLVAACCLYSNMDIGILAADHIFH-------LAPNQSGYYVL 507
             QM     ++PN+  + S+++AC     ++ GI     +FH       L PN   Y ++
Sbjct: 498 FYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGI----KMFHVMVNEYQLMPNTEHYGIM 553

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
           +  +    GR G++ +    +N   ++  P
Sbjct: 554 VDLL----GRMGELDKALDMINEMPMQAGP 579


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 192/614 (31%), Positives = 320/614 (52%), Gaps = 75/614 (12%)

Query: 1    MKAVVLLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKT---------LKKLH 51
            MK ++ L R F     V + +L+        +    ++D+   +K+         +K+LH
Sbjct: 414  MKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNSVKSFFNIVRMEAIKRLH 473

Query: 52   AQIIINQHLHSNPSIGLKLMRTYGACG-QMVDTRHVFDEITNKNVVFFNVLIRSYVNNYL 110
            A  I++   + + ++  K++R+Y      +V    VFD+I       +N+LIR    +  
Sbjct: 474  AYYIVSGLYNCHYAMS-KVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQSDA 532

Query: 111  YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG 170
              DA+  YK     G  PD  T+P +LKAC+  N+L  G Q+H  + K+GL  ++F  N 
Sbjct: 533  PADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNS 592

Query: 171  LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
            L+ +Y  CG L  AR V ++M  KDVV+WNS++ GY+Q  RF + L + + M++  +K D
Sbjct: 593  LIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKAD 652

Query: 231  ADTMASLLPSVT---------------------------NTSPE------NVLSVKEMFL 257
              TM  ++ + T                           NT  +       + S +++F 
Sbjct: 653  KVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFF 712

Query: 258  KLDNKNLVSWNVMIAVYAN-----------NSMP--------------------AEAVDL 286
             +  +N+V+ N MIA YA            + +P                    ++A+++
Sbjct: 713  NMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEI 772

Query: 287  YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
            + QM+   ++P+AI +ASV+ +C  L AL LG+ +H YV R  ++ +  +EN+L+DMY K
Sbjct: 773  FRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMK 832

Query: 347  CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
            CGS  EA  VF +M+ +D +SW S+I     +G   +++ LF  ML  G  P+ + F+ V
Sbjct: 833  CGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGV 892

Query: 407  LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP 466
            L AC++A L+EEG  +F+ M   Y L P+++H+ C+VDLLGRAG++E+A   I +MP++P
Sbjct: 893  LIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDP 952

Query: 467  NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526
            +  +W  L+ +C  + ++ I  +    +  L P+ SG Y LLSN YA A RW +   VR+
Sbjct: 953  DPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQ 1012

Query: 527  FMNSKGIKKMPGAS 540
             M    ++K PG S
Sbjct: 1013 CMADTDVRKSPGCS 1026



 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 146/452 (32%), Positives = 251/452 (55%), Gaps = 39/452 (8%)

Query: 81  VDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC 140
           + ++ +  ++ ++    ++ L+++Y +     DAL ++++   H  D D Y +   LKAC
Sbjct: 41  IHSQLIAHQVFDRRPTPWHALLKAYSHGPHPQDALQLFRHARWHAAD-DTYAFTFALKAC 99

Query: 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWN 200
           +G       +Q+H  VV+ G ++  +    LV +Y  CGCL ++R    +MP K+ V+WN
Sbjct: 100 AGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWN 159

Query: 201 SMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD 260
            ++ G+A  G          E+E  R+                           +F ++ 
Sbjct: 160 VVITGFAGWG----------EVEYARL---------------------------LFERMP 182

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
            +N+VSW+ MI  Y     P EAV L+ +M   GI P+ I+V +V+PA  ++  +L+G  
Sbjct: 183 CRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEA 242

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM-RCQDVVSWTSMISAYGMSG 379
           +H Y E++ L  ++R+ N+L+D+YAK GS+  +  VFD+M   +++VSWTS+IS + M G
Sbjct: 243 LHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHG 302

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
               AV LF+ M  +G+ P+ I F+SVL ACSH GL+E+G  +FK M  +Y + P ++HF
Sbjct: 303 LSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHF 362

Query: 440 ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
            C++D+LGRAG++ EA  +I+  P+E N  +W +L+  C  Y  +++G      I  L  
Sbjct: 363 GCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILALER 422

Query: 500 NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531
              G +V+LSN+  +  R+ D + VRK ++ +
Sbjct: 423 EFGGDFVVLSNMLTELRRFSDAEIVRKLVDQR 454



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 147/333 (44%), Gaps = 42/333 (12%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY--- 105
           +LH  +++ +       +   L+  Y  CG + D+R  F+E+  KN V +NV+I  +   
Sbjct: 110 QLHG-LVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGW 168

Query: 106 ------------------------VNNYLY----YDALHVYKNMSVHGFDPDCYTYPCVL 137
                                   ++ Y       +A+ +++ M   G  P   T   V+
Sbjct: 169 GEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVV 228

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM-PSKDV 196
            A S    +L+G  +H    K GL +++  GN L+ +Y K G ++ + RV ++M   +++
Sbjct: 229 PALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNL 288

Query: 197 VTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS--PENVLSVKE 254
           V+W S+++G+A +G   +A+++  +M    I+P+  T  S+L + ++     + V   K 
Sbjct: 289 VSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKS 348

Query: 255 MFLKLD-NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           M  + + N ++  +  +I +        EA  +     V   E NA    ++L  C    
Sbjct: 349 MIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPV---EVNATVWRTLLGCCSKYG 405

Query: 314 ALLLGRKIHRYV---ERKKLQPNLRLENALVDM 343
            + +G +  + +   ER+     + L N L ++
Sbjct: 406 EVEMGERTMKKILALEREFGGDFVVLSNMLTEL 438


>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 184/492 (37%), Positives = 275/492 (55%), Gaps = 38/492 (7%)

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
            K ++   ++I  Y +   +  A  V+  M     DP+ +T   VLKAC G   L  G  
Sbjct: 55  GKGLIGEALMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKGMKCLSYGRL 114

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGC--LKEARRVLNDMPSKDVVTWNSMVAGYAQN 209
           +H   +K GLD  ++  N L+ MY  C C  + +A  V   +  K+ V+W +++AGY   
Sbjct: 115 VHGLAIKHGLDGFIYVDNALMDMYATC-CVSMDDACMVFRGIHLKNEVSWTTLIAGYTHR 173

Query: 210 GRFDEALDVCREM--ESLRIKPDADTMA--------------SLLPSVTNTSPENVLSV- 252
                 L V R+M  E + + P + ++A               L  +VT    E+ L V 
Sbjct: 174 DDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVM 233

Query: 253 ----------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE 296
                              F +++ ++L++WN +IA Y   S P E++ ++  ME  G  
Sbjct: 234 NSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGY-ERSNPTESLYVFSMMESEGFS 292

Query: 297 PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTV 356
           PN  +  S++ AC  L+ L  G++IH  + R+ L  NL L NAL+DMY+KCG++ ++  V
Sbjct: 293 PNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQV 352

Query: 357 FDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL 416
           F  M  +D+VSWT+M+  YG  G G +AV LF KM+ SG+ PD + F+++LSACSHAGL+
Sbjct: 353 FGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLV 412

Query: 417 EEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
           +EG  YFK+M   Y + P  E + C+VDLLGRAGKVEEAY+LI+ MP +P+E +WG  + 
Sbjct: 413 DEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLG 472

Query: 477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKM 536
           AC  ++  ++G LAA  I  L P+ +G YV+LSNIYA  G+WG+  R+RK M   G KK 
Sbjct: 473 ACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAADGKWGEFARLRKLMKRMGNKKE 532

Query: 537 PGAS-VEMNDQV 547
            G S VE+ + V
Sbjct: 533 TGRSWVEVGNHV 544



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 148/341 (43%), Gaps = 37/341 (10%)

Query: 70  LMRTYGACG-QMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
           LM  Y  C   M D   VF  I  KN V +  LI  Y +    Y  L V++ M +   + 
Sbjct: 134 LMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVEL 193

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           + +++   ++AC+   S   G Q+H +V K G + NL   N ++ MY +C C  EA R  
Sbjct: 194 NPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYF 253

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN----- 243
            +M  +D++TWN+++AGY ++    E+L V   MES    P+  T  S++ +        
Sbjct: 254 YEMNQRDLITWNTLIAGYERSNP-TESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLN 312

Query: 244 ----------------------------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
                                       +   N+    ++F  +  ++LVSW  M+  Y 
Sbjct: 313 CGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYG 372

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG-RKIHRYVERKKLQPNL 334
            +    EAV+L+ +M   GI P+ +   ++L AC     +  G R     V    + P+ 
Sbjct: 373 THGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQ 432

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
            +   +VD+  + G + EA  + + M  + D   W   + A
Sbjct: 433 EIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLGA 473



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 105/198 (53%), Gaps = 2/198 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LHA +       SN  +   ++  Y  C    +    F E+  ++++ +N LI  Y  
Sbjct: 215 EQLHAAVT-KHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYER 273

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +    ++L+V+  M   GF P+C+T+  ++ AC+    L  G QIH  +++ GLD NL  
Sbjct: 274 SNPT-ESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLAL 332

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY KCG + ++ +V   M  +D+V+W +M+ GY  +G  +EA+++  +M    I
Sbjct: 333 SNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGI 392

Query: 228 KPDADTMASLLPSVTNTS 245
           +PD     ++L + ++  
Sbjct: 393 RPDRVVFMAILSACSHAG 410



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 9/162 (5%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++H +II  + L  N ++   L+  Y  CG + D+  VF  ++ +++V +  ++  Y  
Sbjct: 315 QQIHGRII-RRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGT 373

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +    +A+ ++  M   G  PD   +  +L ACS +  +  GL+    +V    DYN+  
Sbjct: 374 HGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVG---DYNISP 430

Query: 168 GNGL----VAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVA 204
              +    V + G+ G ++EA  ++  MP K D   W   + 
Sbjct: 431 DQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLG 472


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 173/530 (32%), Positives = 282/530 (53%), Gaps = 45/530 (8%)

Query: 23  STQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD 82
           ST YT  S  AC     +   ++  K+LHAQ+I N   H +P +   L+  Y   G   +
Sbjct: 270 STTYTS-SLTACA----RLSSLRWGKQLHAQVIRNLP-HIDPYVASALVELYAKSGCFKE 323

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
            + VF+ + ++N V + VLI  ++    + +++ ++  M       D +    ++  C  
Sbjct: 324 AKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCS 383

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
              L +G Q+H   +K G    +   N L++MY KC  L+ A  +   M  KD+V+W SM
Sbjct: 384 RMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSM 443

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK 262
           +  Y+Q G                                     NV   +E F  +  K
Sbjct: 444 ITAYSQVG-------------------------------------NVAKAREFFDGMSEK 466

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLY-LQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           N+++WN M+  Y  +    + + +Y + +    + P+ ++  ++   C DL A  LG +I
Sbjct: 467 NVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQI 526

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
                +  L  +  + NA++ MY+KCG + EAR VFD +  +D+VSW +MI+ Y   G G
Sbjct: 527 IGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMG 586

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
             A+ +F  +L  G  PD I++V+VLS CSH+GL++EG++YF +M   + + P +EHF+C
Sbjct: 587 KQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSC 646

Query: 442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501
           +VDLLGRAG + EA DLI  MPM+P   +WG+L++AC ++ N ++  LAA H+F L    
Sbjct: 647 MVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPD 706

Query: 502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           SG Y+L++ IYA AG+  D  ++RK M  KGIKK PG S +E++++V + 
Sbjct: 707 SGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVF 756



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 157/342 (45%), Gaps = 38/342 (11%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD-P 128
           ++  Y   G++ D   +F  +  ++V  +N L+  Y  +  Y  +L  + +M   G   P
Sbjct: 77  MLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWP 136

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           + +T  C +K+C       + LQ+   V K     +      LV M+ +CG +  A R+ 
Sbjct: 137 NAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLF 196

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
             +    +   NSM+AGY +    D AL                                
Sbjct: 197 VRIKEPTMFCRNSMLAGYVKTYGVDHAL-------------------------------- 224

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
                E+F  +  +++VSWN+M++  + +    EA+D+ + M+  G+  ++ +  S L A
Sbjct: 225 -----ELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTA 279

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  LS+L  G+++H  V R     +  + +ALV++YAK G   EA+ VF+ +  ++ V+W
Sbjct: 280 CARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAW 339

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
           T +IS +   G   ++V LF++M    +  D  A  +++S C
Sbjct: 340 TVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGC 381



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 112/469 (23%), Positives = 194/469 (41%), Gaps = 114/469 (24%)

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL-NDMPSKD 195
           L++C    +L     +H  +V VGL   +F  N L+  Y  CG L +ARR+L  D+   +
Sbjct: 11  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPN 70

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM 255
           V+T N M+ GYA+ GR  +A+                                     E+
Sbjct: 71  VITHNVMLNGYAKLGRLSDAV-------------------------------------EL 93

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE-PNAISVASVLPACGDLSA 314
           F ++  +++ SWN +++ Y  +     +++ +L M   G   PNA ++A  + +CG L  
Sbjct: 94  FGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGW 153

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT----------------------- 351
             L  ++   V++   Q +  +  ALVDM+ +CG++                        
Sbjct: 154 HSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAG 213

Query: 352 --------EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
                    A  +FD M  +DVVSW  M+SA   SG+  +A+ +   M   G+  DS  +
Sbjct: 214 YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 273

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEA------ 455
            S L+AC+    L  G+   ++  +  + +P I+ +  + LV+L  ++G  +EA      
Sbjct: 274 TSSLTACARLSSLRWGK---QLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNS 330

Query: 456 -------------------------YDLIKQMP---MEPNERIWGSLVAACCLYSNMDIG 487
                                     +L  QM    M  ++    +L++ CC  S MD+ 
Sbjct: 331 LHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCC--SRMDLC 388

Query: 488 ILAADHIFHLAPNQSGYYVL---LSNIYAKAGRWGDVKRVRKFMNSKGI 533
           +    H   L   Q    V+   L ++YAK       + + +FMN K I
Sbjct: 389 LGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDI 437


>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 179/482 (37%), Positives = 266/482 (55%), Gaps = 33/482 (6%)

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
           R VF+ I   +V  +N +IR Y N+     AL  Y+ M   G+ PD +T+P VLKACSG 
Sbjct: 60  RSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGL 119

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
             +  G  +H  VVK G + N++    L+ MY  CG +    RV  D+P  +VV W S++
Sbjct: 120 RDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLI 179

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLL--------PSVTNTSPENVL----- 250
           +G+  N RF +A++  REM+S+ +KP+   M  LL        P   +    NV+     
Sbjct: 180 SGFVNNNRFSDAIEAFREMQSIGVKPNETIMVDLLVACGRCFDPYCQSKFEFNVILATSL 239

Query: 251 -----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                      + + +F  +  +NLVSWN +I  Y+ N    EA+ ++  M   GI P+ 
Sbjct: 240 IDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGIAPDK 299

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           ++  SV+ A        LG+ IH YV +     +  +  ALV+MYAK G+   A+ +F+ 
Sbjct: 300 VTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYAKTGNAESAKKMFED 359

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG-LCPDSIAFVSVLSACSHAGLLEE 418
           +  +D ++WT +I      G G  A+++F +M   G   PD I ++ VL ACSH GL+EE
Sbjct: 360 LEKKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATPDGITYLGVLYACSHIGLVEE 419

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           G+ YF  M + Y L P +EH+ C+VD+L RAG+ EEA  L+K MP++P   IWG+L+  C
Sbjct: 420 GQRYFAEMRDLYGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVQPTANIWGALLNGC 479

Query: 479 CLYSNMDIGILAADHIFHLAPNQ----SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534
            ++ N+D+    AD I  +        SG YVLLSNIYAKAGRW DVK +R+ M SK + 
Sbjct: 480 EIHENLDL----ADRIRSMVSESEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSKRVD 535

Query: 535 KM 536
           K+
Sbjct: 536 KL 537



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 168/376 (44%), Gaps = 62/376 (16%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           DI+    +H   ++      N  +   L+  Y  CG++     VF++I   NVV +  LI
Sbjct: 121 DIQFGSCVHG-FVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLI 179

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS-----VV 157
             +VNN  + DA+  ++ M   G  P+               +++V L + C        
Sbjct: 180 SGFVNNNRFSDAIEAFREMQSIGVKPN--------------ETIMVDLLVACGRCFDPYC 225

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           +   ++N+     L+ MY KCG ++ AR + + MP +++V+WNS++ GY+QNG  +EA+ 
Sbjct: 226 QSKFEFNVILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMC 285

Query: 218 VCREMESLRIKPDADTMASLLPS----------------VTNTS---------------- 245
           +  +M  L I PD  T  S++ +                V+ T                 
Sbjct: 286 MFSDMLDLGIAPDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYA 345

Query: 246 -PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAISVA 303
              N  S K+MF  L+ K+ ++W V+I   A++    +A+ ++ +M+  G   P+ I+  
Sbjct: 346 KTGNAESAKKMFEDLEKKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATPDGITYL 405

Query: 304 SVLPACGDLSALLLGRKIHRYVERKK----LQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
            VL AC  +  +  G+   RY    +    L+P +     +VD+ ++ G   EA  +   
Sbjct: 406 GVLYACSHIGLVEEGQ---RYFAEMRDLYGLEPTVEHYGCMVDILSRAGRFEEAERLVKT 462

Query: 360 MRCQDVVS-WTSMISA 374
           M  Q   + W ++++ 
Sbjct: 463 MPVQPTANIWGALLNG 478



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 122/266 (45%), Gaps = 24/266 (9%)

Query: 236 SLLPSVTNTSPE--NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
           S L     T PE  N+   + +F  +D  ++  WN MI  Y+N+  P +A+  Y +M   
Sbjct: 41  SRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRK 100

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
           G  P+  +   VL AC  L  +  G  +H +V +   + N+ +   L+ MY  CG +   
Sbjct: 101 GYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWG 160

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
             VF+ +   +VV+W S+IS +  + +  DA+  F +M   G+ P+    V +L AC   
Sbjct: 161 LRVFEDIPKLNVVAWGSLISGFVNNNRFSDAIEAFREMQSIGVKPNETIMVDLLVAC--- 217

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
                GR +      +++    +     L+D+  + G +  A  L   MP E N   W S
Sbjct: 218 -----GRCFDPYCQSKFEF--NVILATSLIDMYAKCGDMRTARYLFDGMP-ERNLVSWNS 269

Query: 474 LVA----------ACCLYSNM-DIGI 488
           ++           A C++S+M D+GI
Sbjct: 270 IITGYSQNGDAEEAMCMFSDMLDLGI 295



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 137/310 (44%), Gaps = 14/310 (4%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           N  +   L+  Y  CG M   R++FD +  +N+V +N +I  Y  N    +A+ ++ +M 
Sbjct: 232 NVILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDML 291

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
             G  PD  T+  V++A        +G  IH  V K G   +      LV MY K G  +
Sbjct: 292 DLGIAPDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYAKTGNAE 351

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPDADTMASLLPSV 241
            A+++  D+  KD + W  ++ G A +G  ++AL + + M E     PD  T   +L + 
Sbjct: 352 SAKKMFEDLEKKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATPDGITYLGVLYAC 411

Query: 242 TNTSPENVLSVKEMFLKLDN-----KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE 296
           ++     V   +  F ++ +       +  +  M+ + +      EA  L   M V   +
Sbjct: 412 SHIGL--VEEGQRYFAEMRDLYGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPV---Q 466

Query: 297 PNAISVASVLPACGDLSALLLGRKIHRYV-ERKKLQPNLRLENALVDMYAKCGSLTEART 355
           P A    ++L  C     L L  +I   V E ++L   + +   L ++YAK G   + + 
Sbjct: 467 PTANIWGALLNGCEIHENLDLADRIRSMVSESEELGSGIYV--LLSNIYAKAGRWADVKL 524

Query: 356 VFDQMRCQDV 365
           + + M+ + V
Sbjct: 525 IRESMKSKRV 534


>gi|2191182|gb|AAB61067.1| similar to N. tabacum membrane-associated salt-inducible protein
           (PID:g473874) [Arabidopsis thaliana]
          Length = 597

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 183/518 (35%), Positives = 283/518 (54%), Gaps = 21/518 (4%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF---------FN 99
           KL  Q I+   L  +  +   L+  Y  C      RHVF+    ++ V+         +N
Sbjct: 51  KLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSASWN 110

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            +I  +  +     AL ++  M   GF+P+  +    + ACS    L  G +IH   VK 
Sbjct: 111 TVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKK 170

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G + + +  + LV MYGKC CL+ AR V   MP K +V WNSM+ GY   G     +++ 
Sbjct: 171 GFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEIL 230

Query: 220 REMESLRIKPDADTMASLLPSVTNTSPENVLSVK--------EMFLKLDNKNLVSWNVMI 271
             M     +P   T+ S+L + + +   N+L  K         +F K       SWNVMI
Sbjct: 231 NRMIIEGTRPSQTTLTSILMACSRS--RNLLHGKFIHANLAETVFSKTQKDVAESWNVMI 288

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           + Y +     +AV++Y QM   G++P+ ++  SVLPAC  L+AL  G++IH  +   +L+
Sbjct: 289 SSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLE 348

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            +  L +AL+DMY+KCG+  EA  +F+ +  +DVVSWT MISAYG  GQ  +A+  F +M
Sbjct: 349 TDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEM 408

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
              GL PD +  ++VLSAC HAGL++EG  +F  M  +Y + P IEH++C++D+LGRAG+
Sbjct: 409 QKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGR 468

Query: 452 VEEAYDLIKQMP-MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSN 510
           + EAY++I+Q P    N  +  +L +ACCL+    +G   A  +    P+ +  Y++L N
Sbjct: 469 LLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPDDASTYMVLFN 528

Query: 511 IYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           +YA    W   +RVR  M   G++K PG S +EM+D+V
Sbjct: 529 LYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKV 566


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 174/498 (34%), Positives = 271/498 (54%), Gaps = 34/498 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+K+ K +H    +   +  +  +   L+  Y  C  + + + VFD + ++NVV +N L 
Sbjct: 358 DLKSGKTIHG-FAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLS 416

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             YVN       L+V++ M ++G  PD  T   +L ACS    L  G  IH   V+ G+ 
Sbjct: 417 SCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMV 476

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++F  N L+++Y KC C++EA+ V + +P ++V +WN ++  Y  N  +++ L +  +M
Sbjct: 477 EDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQM 536

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
               +K D                                  ++W+V+I     NS   E
Sbjct: 537 NRDEVKADE---------------------------------ITWSVVIGGCVKNSRIEE 563

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A++++ +M+  G +P+  ++ S+L AC     L +G++IH YV R     +L   NALVD
Sbjct: 564 AMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVD 623

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MYAKCG L+ +R VFD M  +DV SW +MI A GM G G +A++LF KML+S + PDS  
Sbjct: 624 MYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSAT 683

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           F  VLSACSH+ L+EEG   F  M+  + + P  EH+ C+VD+  RAG +EEAY  I++M
Sbjct: 684 FTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRM 743

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
           PMEP    W + +A C +Y N+++  ++A  +F + PN S  YV L NI   A  W +  
Sbjct: 744 PMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEAS 803

Query: 523 RVRKFMNSKGIKKMPGAS 540
           ++RK M  +GI K PG S
Sbjct: 804 KIRKLMKERGITKTPGCS 821



 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 209/392 (53%), Gaps = 33/392 (8%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S+ SIG   +  YG C  +   R VFD++  ++VV +N L   YVN       L+V++ M
Sbjct: 73  SDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKM 132

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
            ++    +  T   +L  CS    L  G +IH  VV+ G+  ++F  +  V  Y KC C+
Sbjct: 133 GLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCV 192

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
           +EA+ V + MP +DVVTWNS+ + Y   G   + L+V REM    +KPD  T++ +L + 
Sbjct: 193 REAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSAC 252

Query: 242 TNTSP------------------------------ENVLSVKE---MFLKLDNKNLVSWN 268
           ++                                 E+ L V+E   +F  + ++N+++WN
Sbjct: 253 SDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWN 312

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
            + + Y N   P + ++++ +M ++G++P+ ++++S+LPAC  L  L  G+ IH +  + 
Sbjct: 313 SLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKH 372

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
            +  ++ +  ALV++YA C  + EA+TVFD M  ++VV+W S+ S Y   G     + +F
Sbjct: 373 GMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVF 432

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
            +M+++G+ PD +  +S+L ACS    L+ G+
Sbjct: 433 REMVLNGVKPDLVTMLSILHACSDLQDLKSGK 464



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 125/436 (28%), Positives = 222/436 (50%), Gaps = 40/436 (9%)

Query: 24  TQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT 83
           T  ++L G  C+D+     D+K+ K++H   ++   +  +  +    +  Y  C  + + 
Sbjct: 143 TVSSILPG--CSDL----QDLKSGKEIHG-FVVRHGMVEDVFVSSAFVNFYAKCLCVREA 195

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
           + VFD + +++VV +N L   YVN       L+V++ M + G  PD  T  C+L ACS  
Sbjct: 196 QTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDL 255

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
             L  G  IH   +K G+  N+F  N LV +Y  C C++EA+ V + MP ++V+TWNS+ 
Sbjct: 256 QDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLA 315

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP----------------- 246
           + Y   G   + L+V REM    +KPD   M+S+LP+ +                     
Sbjct: 316 SCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMV 375

Query: 247 -------------ENVLSVKE---MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
                         N L V+E   +F  + ++N+V+WN + + Y N   P + ++++ +M
Sbjct: 376 EDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREM 435

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
            ++G++P+ +++ S+L AC DL  L  G+ IH +  R  +  ++ + NAL+ +YAKC  +
Sbjct: 436 VLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCV 495

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
            EA+ VFD +  ++V SW  +++AY  + +    + +FS+M    +  D I +  V+  C
Sbjct: 496 REAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGC 555

Query: 411 SHAGLLEEGRYYFKIM 426
                +EE    F+ M
Sbjct: 556 VKNSRIEEAMEIFRKM 571



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 200/395 (50%), Gaps = 35/395 (8%)

Query: 113 DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV 172
           +A+ +Y +    G  PD   +  V KAC+ S   L   Q H    + G+  ++  GN  +
Sbjct: 23  EAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFI 82

Query: 173 AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
             YGKC C++ ARRV +D+ ++DVVTWNS+ A Y   G   + L+V R+M   ++K +  
Sbjct: 83  HAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPL 142

Query: 233 TMASLLPSVTNTSP-----------------ENV-------------LSVKE---MFLKL 259
           T++S+LP  ++                    E+V             L V+E   +F  +
Sbjct: 143 TVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLM 202

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
            ++++V+WN + + Y N   P + ++++ +M + G++P+ ++V+ +L AC DL  L  G+
Sbjct: 203 PHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGK 262

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
            IH +  +  +  N+ + NALV++Y  C  + EA+ VFD M  ++V++W S+ S Y   G
Sbjct: 263 AIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCG 322

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
                + +F +M ++G+ PD +A  S+L ACS    L+ G+        ++ +V  +   
Sbjct: 323 FPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAV-KHGMVEDVFVC 381

Query: 440 ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
             LV+L      V EA  +   MP   N   W SL
Sbjct: 382 TALVNLYANCLCVREAQTVFDLMPHR-NVVTWNSL 415



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 125/230 (54%), Gaps = 3/230 (1%)

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           V   + +F  L  +++V+WN + A Y N   P + ++++ +M ++ ++ N ++V+S+LP 
Sbjct: 91  VEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPG 150

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C DL  L  G++IH +V R  +  ++ + +A V+ YAKC  + EA+TVFD M  +DVV+W
Sbjct: 151 CSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTW 210

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            S+ S Y   G     + +F +M++ G+ PD +    +LSACS    L+ G+        
Sbjct: 211 NSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFAL- 269

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           ++ +V  +     LV+L      V EA  +   MP   N   W SL A+C
Sbjct: 270 KHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHR-NVITWNSL-ASC 317



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 89/198 (44%), Gaps = 2/198 (1%)

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           + +P EA+ +Y      GI+P+     +V  AC      L  ++ H    R  +  ++ +
Sbjct: 18  HGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSI 77

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            NA +  Y KC  +  AR VFD +  +DVV+W S+ + Y   G     + +F KM ++ +
Sbjct: 78  GNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKV 137

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
             + +   S+L  CS    L+ G+     +  ++ +V  +   +  V+   +   V EA 
Sbjct: 138 KANPLTVSSILPGCSDLQDLKSGKEIHGFVV-RHGMVEDVFVSSAFVNFYAKCLCVREAQ 196

Query: 457 DLIKQMPMEPNERIWGSL 474
            +   MP   +   W SL
Sbjct: 197 TVFDLMPHR-DVVTWNSL 213


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 173/542 (31%), Positives = 287/542 (52%), Gaps = 43/542 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++H  ++    LH++P +   L+  Y  CG + +   VF  + +K +  +N ++ +Y  
Sbjct: 292 RQIHCDVV-KMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAE 350

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N   Y AL ++  M      PD +T   V+  CS       G  +H  + K  +      
Sbjct: 351 NDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTI 410

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM--ESL 225
            + L+ +Y KCGC  +A  V   M  KD+V W S+++G  +NG+F EAL V  +M  +  
Sbjct: 411 ESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDD 470

Query: 226 RIKPDADTMASLLPSVTNTS------------------------------------PENV 249
            +KPD+D M S+  +                                         PE  
Sbjct: 471 SLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMA 530

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
           L V   F  +  +N+V+WN MI+ Y+ N++P  ++DL+  M   GI P+++S+ SVL A 
Sbjct: 531 LKV---FTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAI 587

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
              ++LL G+ +H Y  R  +  +  L+NAL+DMY KCG    A  +F +M+ + +++W 
Sbjct: 588 SSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWN 647

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
            MI  YG  G    A++LF +M  +G  PD + F+S++SAC+H+G +EEG+  F+ M + 
Sbjct: 648 LMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQD 707

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y + P +EH+A +VDLLGRAG +EEAY  IK MP+E +  IW  L++A   + N+++GIL
Sbjct: 708 YGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGIL 767

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           +A+ +  + P +   YV L N+Y +AG   +  ++   M  KG+ K PG S +E++D+  
Sbjct: 768 SAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVSDRTN 827

Query: 549 II 550
           + 
Sbjct: 828 VF 829



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 126/426 (29%), Positives = 202/426 (47%), Gaps = 48/426 (11%)

Query: 99  NVLIRSYVNNYLYYDALHVY-KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           N  IR+ +    Y  ALH+Y K+     F    +T+P +LKACS   +L  G  IH SVV
Sbjct: 28  NSGIRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTIHGSVV 87

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND-------MPSKDVVTWNSMVAGYAQNG 210
            +G  Y+ F    LV MY KCG L  A +V +        + ++DV  WNSM+ GY +  
Sbjct: 88  VLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFR 147

Query: 211 RFDEALDVCREMESLRIKPDA---------------------------------DTMASL 237
           RF E +   R M    ++PDA                                 DT + L
Sbjct: 148 RFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFL 207

Query: 238 LPSVTNTSPENVLSVK--EMFLKLDNK-NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
             ++ +   +  LS+    +F+++++K N+V WNVMI  +  + +   ++DLY+  + + 
Sbjct: 208 KTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNS 267

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
           ++  + S    L AC        GR+IH  V +  L  +  +  +L+ MY+KCG + EA 
Sbjct: 268 VKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAE 327

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
           TVF  +  + +  W +M++AY  +  GY A+ LF  M    + PDS    +V+S CS  G
Sbjct: 328 TVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLG 387

Query: 415 LLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           L   G+  + ++     +    IE  + L+ L  + G   +AY + K M  E +   WGS
Sbjct: 388 LYNYGKSVHAELFKRPIQSTSTIE--SALLTLYSKCGCDPDAYLVFKSME-EKDMVAWGS 444

Query: 474 LVAACC 479
           L++  C
Sbjct: 445 LISGLC 450


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 176/465 (37%), Positives = 256/465 (55%), Gaps = 35/465 (7%)

Query: 88  DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF-DPDCYTYPCVLKACSGSNSL 146
           D     NV+ +N L+     +    DA+     M   G   PD     C L A      +
Sbjct: 114 DGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLV 173

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY 206
            VG Q+H   VK G   +      L+ MYGKCG   E  RV ++    DV + N+++AG 
Sbjct: 174 SVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGL 233

Query: 207 AQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS 266
           ++N +  EAL + +E          D    L                         N+VS
Sbjct: 234 SRNAQVCEALRLFKEF--------VDRGVEL-------------------------NVVS 260

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           W  ++A    N    EAV+ + +M+  G EPN++++  VLPA  +++AL+ GR  H +  
Sbjct: 261 WTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFAL 320

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           RK    ++ + +ALVDMYAKCG + +AR +FD M  ++VVSW +MI  Y M G+  +AV 
Sbjct: 321 RKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVW 380

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           +F  ML     PD + F  +L+AC+ AGL EEGR+YFK M  +Y + PR+EH+AC+V LL
Sbjct: 381 MFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLL 440

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
           GRAGK++EAYDLI  MP EP+  IWGSL+ +C ++ N+D+  +AA+ +FHL P  +G YV
Sbjct: 441 GRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYV 500

Query: 507 LLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           LLSNIYA    W  V RVR+ M   G+KK  G S +E+ ++V ++
Sbjct: 501 LLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHML 545



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 121/278 (43%), Gaps = 41/278 (14%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKN--------- 120
           L+  YG CGQ  +   VFDE ++ +V   N LI     N    +AL ++K          
Sbjct: 198 LIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELN 257

Query: 121 --------------------------MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
                                     M   G +P+  T PCVL A +   +L+ G   HC
Sbjct: 258 VVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHC 317

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
             ++ G  ++++  + LV MY KCG +K+AR + + M S++VV+WN+M+ GYA  G    
Sbjct: 318 FALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVN 377

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNT--SPENVLSVKEMFLKLD-NKNLVSWNVMI 271
           A+ +   M   + KPD  T   LL + T    + E     KEM  +   +  +  +  M+
Sbjct: 378 AVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMV 437

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            +        EA DL   M     EP+A    S+L +C
Sbjct: 438 TLLGRAGKLDEAYDLISDMP---FEPDAYIWGSLLGSC 472



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 2/148 (1%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  CG++ D R +FD + ++NVV +N +I  Y       +A+ ++ +M      PD
Sbjct: 334 LVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPD 393

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVV-KVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
             T+ C+L AC+ +     G      +  + G+   + +   +V + G+ G L EA  ++
Sbjct: 394 MVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLI 453

Query: 189 NDMP-SKDVVTWNSMVAGYAQNGRFDEA 215
           +DMP   D   W S++     +G  D A
Sbjct: 454 SDMPFEPDAYIWGSLLGSCRVHGNVDLA 481


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 172/530 (32%), Positives = 283/530 (53%), Gaps = 45/530 (8%)

Query: 23  STQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD 82
           ST YT  S  AC     +   ++  K+LHAQ+I N     +P +   L+  Y  CG   +
Sbjct: 270 STTYTS-SLTACA----RLSSLRWGKQLHAQVIRNLPC-IDPYVASALVELYAKCGCFKE 323

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
            + VF+ + ++N V + VLI  ++ +  + +++ ++  M       D +    ++  C  
Sbjct: 324 AKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCS 383

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
              L +G Q+H   +K G    +   N L++MY KC  L+ A  +   M  KD+V+W SM
Sbjct: 384 RMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSM 443

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK 262
           +  ++Q G                                     N+   +E F  +  K
Sbjct: 444 ITAHSQVG-------------------------------------NIAKAREFFDGMSTK 466

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLY-LQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           N+++WN M+  Y  +    + + +Y + +    + P+ ++  ++   C DL A  LG +I
Sbjct: 467 NVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQI 526

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
                +  L  +  + NA++ MY+KCG + EAR VFD +  +D+VSW +MI+ Y   G G
Sbjct: 527 IGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMG 586

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
             A+ +F  +L  G  PD I++V+VLS CSH+GL++EG+ YF +M   + + P +EHF+C
Sbjct: 587 KQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSC 646

Query: 442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501
           +VDLLGRAG + EA DLI +MPM+P   +WG+L++AC ++ N ++  LAA H+F L    
Sbjct: 647 MVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPD 706

Query: 502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           SG Y+L++ IYA AG+  D  ++RK M  KGIKK PG S +E+N++V + 
Sbjct: 707 SGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVF 756



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 158/342 (46%), Gaps = 38/342 (11%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDP 128
           ++  Y   G++ D   +F  +  ++V  +N L+  Y  +  Y  +L  + +M   G   P
Sbjct: 77  MLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSP 136

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           + +T+   +K+C       + LQ+   V K G   +      LV M+ +CG +  A R+ 
Sbjct: 137 NAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLF 196

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
             +    +   NSM+ GY +    D AL                                
Sbjct: 197 VRIKEPTIFCRNSMLVGYVKTYGVDHAL-------------------------------- 224

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
                E+F  +  +++VSWN+M++  + +    EA+D+ + M+  G+  ++ +  S L A
Sbjct: 225 -----ELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTA 279

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  LS+L  G+++H  V R     +  + +ALV++YAKCG   EA+ VF+ +  ++ V+W
Sbjct: 280 CARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAW 339

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
           T +I+ +   G   ++V LF++M    +  D  A  +++S C
Sbjct: 340 TVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGC 381



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 191/469 (40%), Gaps = 114/469 (24%)

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR-VLNDMPSKD 195
           L++C    +L     +H  +V VGL   +F  N L+  Y  CG L +ARR +L D+   +
Sbjct: 11  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPN 70

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM 255
           V+T N M+ GY + GR  +A+                                     E+
Sbjct: 71  VITHNVMLNGYVKLGRLSDAV-------------------------------------EL 93

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSA 314
           F ++  +++ SWN +++ Y  +     +++ ++ M   G   PNA + A  + +CG L  
Sbjct: 94  FGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGE 153

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS------------------------- 349
             L  ++   V++   Q +  +  ALVDM+ +CG+                         
Sbjct: 154 RSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVG 213

Query: 350 ------LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
                 +  A  +FD M  +DVVSW  M+SA   SG+  +A+ +   M   G+  DS  +
Sbjct: 214 YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 273

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEA------ 455
            S L+AC+    L  G+   ++  +  + +P I+ +  + LV+L  + G  +EA      
Sbjct: 274 TSSLTACARLSSLRWGK---QLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNS 330

Query: 456 -------------------------YDLIKQMP---MEPNERIWGSLVAACCLYSNMDIG 487
                                     +L  QM    M  ++    +L++ CC  S MD+ 
Sbjct: 331 LHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCC--SRMDLC 388

Query: 488 ILAADHIFHLAPNQSGYYVL---LSNIYAKAGRWGDVKRVRKFMNSKGI 533
           +    H   L   Q    V+   L ++YAK       + + +FMN K I
Sbjct: 389 LGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDI 437


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 203/574 (35%), Positives = 309/574 (53%), Gaps = 41/574 (7%)

Query: 18  QALVLSTQYTLLSG-DACNDILDKYPDIKTLKKLHAQII-INQHLHSNPSIGLKLMRTYG 75
           +A V +  YTL++   AC D   K    K   ++HA I+  NQ L  +  +   L+  + 
Sbjct: 105 KAGVGANTYTLVAALQACEDSSFK----KLGMEIHAAILKSNQVL--DVYVANALVAMHV 158

Query: 76  ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC 135
             G+M     +FDE+  K+ + +N +I  +  N LY +AL  +  +      PD  +   
Sbjct: 159 RFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLIS 218

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
           +L A      LL G +IH   +K  LD NL  GN L+ MY KC C+  A  V + M +KD
Sbjct: 219 ILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKD 278

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN------------ 243
           +++W +++A YAQN    EAL + R++++  +  D   + S L + +             
Sbjct: 279 LISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHG 338

Query: 244 --------------------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
                                   N+     MF  +  K++VSW  MI+ Y +N +  EA
Sbjct: 339 YTLKRGLSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEA 398

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
           + ++  M+   +EP++I++ S+L A   LSAL  G++IH ++ RK         N+LVDM
Sbjct: 399 LGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDM 458

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
           YA CGSL  A  VF   R + +V WT+MI+AYGM G+G  AV LFS M    L PD I F
Sbjct: 459 YACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITF 518

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           +++L ACSH+GL+ EG+   + M  +Y+L P  EH+ACLVDLLGRA  +EEAY  +K M 
Sbjct: 519 LALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQ 578

Query: 464 MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKR 523
           +EP   +W + + AC ++SN  +G +AA  +  L P+  G YVL+SN++A +GRW DV+ 
Sbjct: 579 IEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEE 638

Query: 524 VRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           VR  M   G+KK PG S +E+ ++V    +  +S
Sbjct: 639 VRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKS 672



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 147/506 (29%), Positives = 253/506 (50%), Gaps = 58/506 (11%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN-VVFFNV 100
            DI    ++H  +II     S   +   L+  Y  C  ++  R +FD +  +N VV +N 
Sbjct: 24  EDIHRGAEIHG-LIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNS 82

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           +I +Y  N    +AL +++ M   G   + YT    L+AC  S+   +G++IH +++K  
Sbjct: 83  IISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSN 142

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
              +++  N LVAM+ + G +  A R+ +++  KD +TWNSM+AG+ QNG ++EAL    
Sbjct: 143 QVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFC 202

Query: 221 EMESLRIKPDADTMASLLPS------VTNTSPENVLSVKE-------------------- 254
            ++   +KPD  ++ S+L +      + N    +  ++K                     
Sbjct: 203 GLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCC 262

Query: 255 -------MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                  +F K+ NK+L+SW  +IA YA N+   EA+ L  +++  G++ + + + S L 
Sbjct: 263 CVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLL 322

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           AC  L  L   +++H Y  ++ L  +L ++N ++D+YA CG++  A  +F+ ++C+DVVS
Sbjct: 323 ACSGLRCLSHAKEVHGYTLKRGL-SDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVS 381

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YYF 423
           WTSMIS Y  +G   +A+ +F  M  + + PDSI  VS+LSA +    L +G+    + F
Sbjct: 382 WTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIF 441

Query: 424 K--IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY---------DLIKQMPMEPNERIWG 472
           +   M E   +   ++ +AC        G +E AY          L+    M     + G
Sbjct: 442 RKGFMLEGSTVNSLVDMYAC-------CGSLENAYKVFICTRSKSLVLWTTMINAYGMHG 494

Query: 473 SLVAACCLYSNMDIGILAADHIFHLA 498
              AA  L+S M+   L  DHI  LA
Sbjct: 495 RGKAAVELFSIMEDQKLIPDHITFLA 520



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 174/325 (53%), Gaps = 34/325 (10%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M V G   D +T+PCVLKAC     +  G +IH  ++K G D  +F  N LV+MY KC  
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 181 LKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
           +  AR++ + M  + DVV+WNS+++ Y+ NG+  EAL + REM+   +  +  T+ + L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 240 SVTNTS--------------PENVLSV-------------------KEMFLKLDNKNLVS 266
           +  ++S                 VL V                     +F +LD K+ ++
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           WN MIA +  N +  EA+  +  ++   ++P+ +S+ S+L A G L  LL G++IH Y  
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAM 240

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           +  L  NLR+ N L+DMY+KC  +  A  VFD+M  +D++SWT++I+AY  +    +A+ 
Sbjct: 241 KNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALK 300

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACS 411
           L  K+   G+  D++   S L ACS
Sbjct: 301 LLRKVQTKGMDVDTMMIGSTLLACS 325



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 117/234 (50%), Gaps = 11/234 (4%)

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M V G+  ++ +   VL ACG +  +  G +IH  + +      + + N+LV MYAKC  
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 350 LTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
           +  AR +FD+M  + DVVSW S+ISAY ++GQ  +A+ LF +M  +G+  ++   V+ L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
           AC  +   + G      + +  +++      A LV +  R GK+  A  +  ++  E + 
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANA-LVAMHVRFGKMSYAARIFDELD-EKDN 178

Query: 469 RIWGSLVAACC---LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519
             W S++A      LY N  +         +L P++    V L +I A +GR G
Sbjct: 179 ITWNSMIAGFTQNGLY-NEALQFFCGLQDANLKPDE----VSLISILAASGRLG 227


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 188/561 (33%), Positives = 288/561 (51%), Gaps = 70/561 (12%)

Query: 50  LHAQIIINQHLHSN-PS-IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           L  + ++   L +N PS +GL+L+R     G     R +FD I   +    + LI +   
Sbjct: 82  LSTEAMVPPSLPTNIPSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTT 141

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           + L  +A+ +Y ++   G  PD   +    KAC+ S   L   ++H    + G+  ++F 
Sbjct: 142 HGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFV 201

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           GN L+  YGKC C++ ARRV +D+  +DVV+W S+ + Y + G   + +DV REM    +
Sbjct: 202 GNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGV 261

Query: 228 KPDADTMASLLPSVTNTSP------------------------------ENVLSVKEMFL 257
           KP+  T++S+LP+                                       LSV+E  +
Sbjct: 262 KPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARM 321

Query: 258 KLD---NKNLVSWN-VMIAVYAN----------------------------------NSM 279
             D   ++++VSWN V+ A + N                                  N  
Sbjct: 322 VFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGR 381

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
             EAV+++ +M+  G +PN I+++S+LPAC     L +G++IH YV R     +L    A
Sbjct: 382 SEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTA 441

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           L+ MYAKCG L  +R VFD MR +DVV+W +MI A  M G G +A+ LF KML+S + P+
Sbjct: 442 LLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPN 501

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
           S+ F  VLS CSH+ L+EEG   F  M   + + P   H++C+VD+  RAG++ EAY  I
Sbjct: 502 SVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFI 561

Query: 460 KQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519
           + MPMEP    WG+L+AAC +Y N+++  ++A  +F + PN  G YV L NI   A  W 
Sbjct: 562 QGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWS 621

Query: 520 DVKRVRKFMNSKGIKKMPGAS 540
           +  +VR  M  +GI K PG S
Sbjct: 622 EASQVRILMKERGITKTPGCS 642


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 179/509 (35%), Positives = 279/509 (54%), Gaps = 52/509 (10%)

Query: 45  KTLKKLHAQIIINQHLHSNPSIGLKLMRTYG--ACGQMVDTRHVFDEITNKNVVFFNVLI 102
           + +++LHA   +   + ++P +  +L+  Y       +   R +FD I  ++++ +N +I
Sbjct: 30  QEVEQLHA-FSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTII 88

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
           + YV N   +D + ++  + VH + PD +T PCV+K C+    +  G QIH   +K+G  
Sbjct: 89  KCYVENQFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFG 147

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNS-----------MVAGYAQNGR 211
            ++F    LV MY KCG +  AR+V + M  KDVV WNS           M+ GY ++G 
Sbjct: 148 SDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGD 207

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
           FD AL                                     E+F ++   +LV+WN+MI
Sbjct: 208 FDSAL-------------------------------------ELFYQMPIWDLVTWNLMI 230

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           A Y  N    +AV ++  M   G  P+  ++ SVL A   L+ L  GR IH Y+E+   +
Sbjct: 231 AGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFE 290

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            +  L  +L++MYAKCG +  A TVF  ++ + V  WT++I   G+ G    A+ALF +M
Sbjct: 291 LDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEM 350

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
             +GL P++I F+ VL+AC+HAGL+++GR YF +M  +YK+ P +EH+ CLVD+L RAG 
Sbjct: 351 CKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGH 410

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
           +EEA + I+ MP+ PN+ IW SL+     +  +DIG  AA  +  +AP   G Y+LLSN+
Sbjct: 411 LEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNM 470

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           YA +G W  V  VR+ M  +G +K PG S
Sbjct: 471 YAASGMWEKVSHVREMMYKRGFRKDPGCS 499


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 186/589 (31%), Positives = 302/589 (51%), Gaps = 68/589 (11%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N++++ Y  +  LK  +A+ + +     N      L+  Y   G + D + VFD + N +
Sbjct: 44  NNLINTYGKLGDLK--NARNVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHD 101

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           VV +N L+  Y  N L  +++ VY  M   G  + +  T+  +L   S    + +G QIH
Sbjct: 102 VVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIH 161

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL------------------------- 188
             + K G    LF G+ LV MY K G + +A R+                          
Sbjct: 162 GQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIV 221

Query: 189 ------NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS-- 240
                 ++MP KD ++W +++ G  QNG F EA+D  +EM       D  T  S+L +  
Sbjct: 222 EAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACG 281

Query: 241 --------------VTNTSPE-----------------NVLSVKEMFLKLDNKNLVSWNV 269
                         +  T  +                 NV   + +F K+ +KN++SW  
Sbjct: 282 GFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTA 341

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           M+  Y  N    EAV ++  M+ + I P+  ++ SV+ +C +L++L  G + H       
Sbjct: 342 MLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASG 401

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           L   + + NAL+ +Y KCGSL  A  +F +M+ +D VSWT+++S Y   G+  + ++LF 
Sbjct: 402 LICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFE 461

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
            ML  G+ PD + FV VLSACS AGL+E+G +YF+ M +++++ P  +H+ C++DLL RA
Sbjct: 462 TMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRA 521

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G++EEA + I QMP  P+   W +L+++C L  N++IG  AA+ +  L P     Y+LLS
Sbjct: 522 GRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLS 581

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRSS 557
           +IYA  G+W DV ++RK M   G+KK PG S ++  ++V I +   RSS
Sbjct: 582 SIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSS 630



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 192/441 (43%), Gaps = 98/441 (22%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR------- 185
           Y   LK C  + +     ++HC +++   +   F  N L+  YGK G LK AR       
Sbjct: 8   YTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIP 67

Query: 186 ------------------------RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
                                   RV + MP+ DVV+WNS+++GYA NG   E++ V   
Sbjct: 68  QPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNM 127

Query: 222 M-ESLRIKPDADTMASLLPSVTNT-------------------------SPENVLSVK-- 253
           M +   +  +  T +++L   +N                          SP   +  K  
Sbjct: 128 MLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTG 187

Query: 254 ------EMFLKLDNKNLVSWNVMIA-------------VYAN------------------ 276
                  +F ++  KN+V +N MI              ++ N                  
Sbjct: 188 FINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQ 247

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N +  EAVD + +M + G   +  +  SVL ACG   AL  G++IH Y+ R   Q N+ +
Sbjct: 248 NGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFV 307

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            +AL+DMY KC ++  A  VF +MR ++V+SWT+M+  YG +G   +AV +F  M  + +
Sbjct: 308 GSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEI 367

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PD     SV+S+C++   LEEG   F        L+  +     L+ L G+ G +E A+
Sbjct: 368 HPDDFTLGSVISSCANLASLEEGA-QFHGQALASGLICFVTVSNALITLYGKCGSLEHAH 426

Query: 457 DLIKQMPMEPNERIWGSLVAA 477
            L  +M +  +E  W +LV+ 
Sbjct: 427 QLFHEMKIR-DEVSWTALVSG 446



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 168/377 (44%), Gaps = 27/377 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++HA II   +   N  +G  L+  Y  C  +     VF ++ +KNV+ +  ++  Y  
Sbjct: 290 KQIHAYIIRTDY-QDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQ 348

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    +A+ ++ +M  +   PD +T   V+ +C+   SL  G Q H   +  GL   +  
Sbjct: 349 NGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTV 408

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ +YGKCG L+ A ++ ++M  +D V+W ++V+GYAQ G+ +E + +   M +  I
Sbjct: 409 SNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGI 468

Query: 228 KPDADTMASLLPSVTNTS-PENVLSVKEMFLKLDNKNLV--SWNVMIAVYANNSMPAEAV 284
            PD  T   +L + +     E      E  +K      +   +  MI + +      EA 
Sbjct: 469 VPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAK 528

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP-NLRLENALVDM 343
           +   QM      P+AI  A++L +C     L +G+     +   KL+P N      L  +
Sbjct: 529 NFINQMP---FSPDAIGWATLLSSCRLNGNLEIGKWAAESLH--KLEPQNPASYILLSSI 583

Query: 344 YAKCGSLTEARTVFDQMRCQDVV-----SWTS------MISAYGMSGQGYDAV-----AL 387
           YA  G   +   +   MR   V      SW        + SA   S    D +     +L
Sbjct: 584 YAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESL 643

Query: 388 FSKMLMSGLCPDSIAFV 404
           + KM+  G  PD ++FV
Sbjct: 644 YLKMIEEGYVPD-MSFV 659


>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
 gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 565

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 165/522 (31%), Positives = 290/522 (55%), Gaps = 31/522 (5%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           L ++HA +I  + L  +  +  + +    +   +  +  VFD + + +   +N L+  Y 
Sbjct: 45  LHQVHAHLI-QKGLEQDSFLVTQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYC 103

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
               + D + +Y  M      PD YT+P +LK C+    ++ G+ +H S+++ G+D +++
Sbjct: 104 AKLQFVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIY 163

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL---------- 216
               LV +YGK G +  AR+V + M  ++VV+W +M+ GY+  G   EA           
Sbjct: 164 VTTSLVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPERN 223

Query: 217 ---------------DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN 261
                          DV    ++    P+ + ++            ++LS + +F K   
Sbjct: 224 VASWNAIIGGYMKMGDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAPE 283

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           +++++W+ +I+ Y  N  P EAV  +L+M    ++P+   + S++ AC  L  L L + +
Sbjct: 284 RDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWV 343

Query: 322 HRYVERKKLQPNLR---LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
             Y  R  +  +LR   +  AL+DM AKCG++  A  +F++M  +D++S+ S++    + 
Sbjct: 344 DSYATRCSV--DLRGAHVTAALIDMNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIH 401

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           G G  AV+LF +ML   L PD +AF  +L+ACS AGL++EG +YF++M  +Y +VP ++H
Sbjct: 402 GHGDQAVSLFERMLGEDLTPDDVAFTVILTACSRAGLVDEGWHYFEMMRCKYSMVPSVDH 461

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
           +AC+VDLL R+G+++EAY+LIK +P++ +   WG+L+ AC LY + ++  + A  +  + 
Sbjct: 462 YACIVDLLSRSGRLKEAYELIKSVPVQSHAGAWGALLGACKLYCDSELAEVVASRLIEIE 521

Query: 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           P  +G YVLLSNIYA A RW DV  VR  MN +G++K+PG S
Sbjct: 522 PENAGNYVLLSNIYAAADRWLDVSAVRNQMNERGLRKIPGCS 563


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 182/555 (32%), Positives = 293/555 (52%), Gaps = 41/555 (7%)

Query: 33  ACNDILDKYPDIKTLK---KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDE 89
           ACN  L    D+  L+   ++H+ + +      +  IG  L+  Y  CG +   + VFD 
Sbjct: 116 ACNAALVACADLGALRAGEQVHS-LAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDR 174

Query: 90  ITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG 149
           + + +VV +  LI ++  N  +  A      M   G  P+ +T   +L AC      ++G
Sbjct: 175 MDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC----PRVLG 230

Query: 150 LQIHCSVV-KVGL-DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA 207
            QIH  ++ K+GL   ++++   L+  Y + G  K A+ V + +  K+VV+W SM+  Y 
Sbjct: 231 QQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYI 290

Query: 208 QNGRFDEALDVCREMESLRIKPDADTMASLLPS-------------------VTNTSPEN 248
           ++GR +EAL V  +M S  + P+   ++ +L +                   +T+    N
Sbjct: 291 RDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSN 350

Query: 249 VL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297
            L            ++ M  K++N +LVSW   I+    N    +A+ L  QM   G  P
Sbjct: 351 ALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTP 410

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           N  + +SVL +C D+++L  G + H    +      +   NAL++MY+KCG +  AR  F
Sbjct: 411 NGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAF 470

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           D M   DV SW S+I  +   G    A+ +FSKM  +G+ PD   F+ VL  C+H+G++E
Sbjct: 471 DVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVE 530

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           EG  +F++M +QY   P   H+AC++D+LGR G+ +EA  +I  MP EP+  IW +L+A+
Sbjct: 531 EGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLAS 590

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
           C L+ N+DIG LAAD +  L+   S  YVL+SNIYA  G W D ++VR+ M+  G+KK  
Sbjct: 591 CKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDA 650

Query: 538 GAS-VEMNDQVQIIA 551
           G S +E+N++V   A
Sbjct: 651 GCSWIEINNEVHTFA 665



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 188/376 (50%), Gaps = 34/376 (9%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G++ D   +FD +  KNVV +  ++  Y  N     AL ++ +M   G  P+ +     L
Sbjct: 62  GRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAAL 121

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
            AC+   +L  G Q+H   V+ G   + + G+ L+ MY +CG L  A+ V + M S DVV
Sbjct: 122 VACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVV 181

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL---PSVTNTS--------- 245
            + S+++ + +NG F+ A +   +M    +KP+  TM ++L   P V             
Sbjct: 182 GYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKI 241

Query: 246 ---PENVLS----------------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
               ++V S                 K +F  L  KN+VSW  M+ +Y  +    EA+ +
Sbjct: 242 GLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQV 301

Query: 287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
           +  M   G++PN  +++ VL ACG +    LGR++H    +  L  ++R+ NAL+ MY +
Sbjct: 302 FGDMISEGVDPNEFALSIVLGACGSIG---LGRQLHCSAIKHDLITDIRVSNALLSMYGR 358

Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
            G + E   + +++   D+VSWT+ ISA   +G G  A+AL  +M   G  P+  AF SV
Sbjct: 359 TGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSV 418

Query: 407 LSACSHAGLLEEGRYY 422
           LS+C+    L++G  +
Sbjct: 419 LSSCADVASLDQGMQF 434



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 172/371 (46%), Gaps = 46/371 (12%)

Query: 177 KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV------------------ 218
           K G L +A  + + MP K+VV W S+++GY +NGR + AL +                  
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 219 ----CREMESLRIKPDADTMASLLPSVTNTSPENVL-----------SVKEMFLKLDNKN 263
               C ++ +LR      ++A       +    + L           + KE+F ++D+ +
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR 323
           +V +  +I+ +  N     A +  +QM   G++PN  ++ ++L AC      +LG++IH 
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC----PRVLGQQIHG 235

Query: 324 YVERK--KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
           Y+ +K      ++    AL+D Y++ G    A+ VFD + C++VVSW SM+  Y   G+ 
Sbjct: 236 YLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRL 295

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
            +A+ +F  M+  G+ P+  A   VL AC   GL   GR        ++ L+  I     
Sbjct: 296 EEALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GR-QLHCSAIKHDLITDIRVSNA 351

Query: 442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL--YSNMDIGILAADHIFHLAP 499
           L+ + GR G VEE   ++ ++   P+   W + ++A     +    I +L   H     P
Sbjct: 352 LLSMYGRTGLVEELEAMLNKIE-NPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTP 410

Query: 500 NQSGYYVLLSN 510
           N   +  +LS+
Sbjct: 411 NGYAFSSVLSS 421



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 90/180 (50%), Gaps = 4/180 (2%)

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
           P++ LE   ++   K G L +A  +FD+M  ++VV+WTS++S Y  +G+   A+A+F+ M
Sbjct: 46  PDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADM 105

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
           + SG+ P+  A  + L AC+  G L  G     +   +          +CL+++  R G 
Sbjct: 106 VESGVAPNDFACNAALVACADLGALRAGEQVHSLAV-RAGFAGDAWIGSCLIEMYSRCGS 164

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH--LAPNQSGYYVLLS 509
           +  A ++  +M   P+   + SL++A C     ++   A   +    L PN+     +L+
Sbjct: 165 LPAAKEVFDRMD-SPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILT 223


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 179/557 (32%), Positives = 300/557 (53%), Gaps = 50/557 (8%)

Query: 42  PDIKTL--------KKLHAQIIINQH-------LHSNPSIGLKLMRTYGACGQMVDTRHV 86
           PDI TL        +++  Q+ I  H       L  +  +   L+  Y  CG + + + +
Sbjct: 132 PDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQML 191

Query: 87  FDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNS 145
           FD+   KN V +N +I         ++A ++++ M +    + +  T   +L AC   + 
Sbjct: 192 FDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQ 251

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           L    ++H   ++ G  Y+    NG VA Y KCG L  A RV   M +K V +WN+++ G
Sbjct: 252 LRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGG 311

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP------------------- 246
            AQNG   +AL++  +M    + PD  T+ SLL +  +                      
Sbjct: 312 CAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEID 371

Query: 247 --------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
                             S + +F  ++ K+ VSWN MI+ Y+ N +P +A+ L+ ++  
Sbjct: 372 SFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVS 431

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
            G +P+ I+V SVL AC   SAL LG++ H Y  +  L  ++ +  + +DMYAK G + E
Sbjct: 432 DGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKE 491

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           +R+VFD ++ +D+ SW ++I+AYG+ G G +++ LF +M   G  PD   F+ +L+ CSH
Sbjct: 492 SRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSH 551

Query: 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG 472
           AGL+EEG  YF  M   + + P++EH+AC++D+LGRAG++++A  L+ +MP +P+ R+W 
Sbjct: 552 AGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWS 611

Query: 473 SLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532
           SL++ C  +  ++IG + A+ +  L P     YV LSN+YA +GRW DV+RVR+ +   G
Sbjct: 612 SLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIG 671

Query: 533 IKKMPGAS-VEMNDQVQ 548
           ++K  G S +E+  +V 
Sbjct: 672 LQKDAGCSWIELGGKVH 688



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 140/491 (28%), Positives = 231/491 (47%), Gaps = 63/491 (12%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC   LD+      L ++   ++I   L  +  +G  L+  YG  G +     VF  +  
Sbjct: 40  ACTGSLDR-----GLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPV 94

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSV--HGFDPDCYTYPCVLKACSGSNSLLVGL 150
           +N+V +N +I  +  N    D   +   M     G  PD  T   VL  C+    + +G+
Sbjct: 95  RNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGI 154

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
           +IH   VK+GL  ++   N LV MY KCG L EA+ + +    K+ V+WN+M+ G    G
Sbjct: 155 RIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKG 214

Query: 211 RFDEALDVCREMESLR-IKPDADTMASLLPSVTNTSPENVLSVKEM-------------- 255
              EA ++ REM+    I+ +  T+ ++LP+    S   + S+KE+              
Sbjct: 215 YIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEIS--QLRSLKELHGYSIRHGFQYDEL 272

Query: 256 ---------------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
                                F  ++ K + SWN +I   A N  P +A++LY+QM   G
Sbjct: 273 VANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSG 332

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
           + P+  ++ S+L A   L +L  G+++H +V R  L+ +  +  +L+ +Y  CG  + AR
Sbjct: 333 LVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSAR 392

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            +FD M  +  VSW +MIS Y  +G   DA+ LF K++  G  P  IA VSVL ACS   
Sbjct: 393 LLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQS 452

Query: 415 LLEEGR----YYFKIMTEQYKLVPRIEHFAC-LVDLLGRAGKVEEA---YDLIKQMPMEP 466
            L  G+    Y  K +  +   V      AC  +D+  ++G ++E+   +D +K   +  
Sbjct: 453 ALRLGKETHCYALKALLMEDVFV------ACSTIDMYAKSGCIKESRSVFDGLKNKDLAS 506

Query: 467 NERIWGSLVAA 477
               W +++AA
Sbjct: 507 ----WNAIIAA 513



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 117/350 (33%), Positives = 183/350 (52%), Gaps = 37/350 (10%)

Query: 108 NYLYYDALHVY-KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
           N LY DA+ ++ K ++   F+ D +T+PCV+KAC+GS    +G  IH  V+K+GL  ++F
Sbjct: 8   NELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVF 67

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
            GN L+AMYGK G +  A +V + MP +++V+WNS+++G+++NG   +  D+  EM +  
Sbjct: 68  VGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGE 127

Query: 227 --IKPDADTMASLLP---------------------------SVTNT-----SPENVLSV 252
             + PD  T+ ++LP                            V N+     S    L+ 
Sbjct: 128 EGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTE 187

Query: 253 KEM-FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVASVLPACG 310
            +M F K + KN VSWN MI          EA +L+ +M++   IE N ++V ++LPAC 
Sbjct: 188 AQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACL 247

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           ++S L   +++H Y  R   Q +  + N  V  YAKCG L  A  VF  M  + V SW +
Sbjct: 248 EISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNA 307

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           +I     +G    A+ L+ +M  SGL PD     S+L A +H   L  G+
Sbjct: 308 LIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGK 357



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 16/217 (7%)

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNA--ISVASVLPACGDLSALLLGRKIHRYVERK 328
           +AV+  N + ++A+D+++++ +   E NA   +   V+ AC       LG  IH  V + 
Sbjct: 3   VAVH-RNELYSDAIDMFVKL-ITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKM 60

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
            L  ++ + NAL+ MY K G +  A  VF  M  +++VSW S+IS +  +G   D   + 
Sbjct: 61  GLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDML 120

Query: 389 SKMLM--SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
            +M+    GL PD    V+VL  C+    ++ G     +   +  L   +     LVD+ 
Sbjct: 121 VEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAV-KLGLSEDVRVNNSLVDMY 179

Query: 447 GRAGKVEEAYDLIKQMPMEPNER----IWGSLVAACC 479
            + G + EA     QM  + N R     W +++   C
Sbjct: 180 SKCGYLTEA-----QMLFDKNNRKNAVSWNTMIGGLC 211


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 185/539 (34%), Positives = 288/539 (53%), Gaps = 34/539 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+K  +++H  II N    SN  +   +M  Y  C Q+ +   +F+ + +K++V +  L+
Sbjct: 160 DLKKGREIHGLIITNG-FESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLV 218

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             Y  N     AL +   M   G  PD  T   +L A +   +L +G  IH    + G +
Sbjct: 219 AGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFE 278

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
             +   N L+ MY KCG  + AR V   M SK VV+WN+M+ G AQNG  +EA     +M
Sbjct: 279 SLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKM 338

Query: 223 ESLRIKPDADTMASLLPSVTNTSP-ENVLSVKEMF--LKLDN------------------ 261
                 P   TM  +L +  N    E    V ++   LKLD+                  
Sbjct: 339 LDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRV 398

Query: 262 -----------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
                      K  V+WN MI  YA N    EA++L+  M+  GI+ +  ++  V+ A  
Sbjct: 399 DIAASIFNNLEKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALA 458

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           D S     + IH    R  +  N+ +  ALVDMYAKCG++  AR +FD M+ + V++W +
Sbjct: 459 DFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNA 518

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           MI  YG  G G + + LF++M    + P+ I F+SV+SACSH+G +EEG   FK M E Y
Sbjct: 519 MIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDY 578

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            L P ++H++ +VDLLGRAG++++A++ I++MP++P   + G+++ AC ++ N+++G  A
Sbjct: 579 YLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKA 638

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           A  +F L P++ GY+VLL+NIYA    W  V +VR  M  KG+ K PG S VE+ +++ 
Sbjct: 639 AQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIH 697



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 141/559 (25%), Positives = 249/559 (44%), Gaps = 91/559 (16%)

Query: 57  NQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALH 116
           N+HL     I L     +   G   +   VF+ +  K  V ++++++ Y  N    DAL 
Sbjct: 77  NEHLFQTKVISL-----FCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALC 131

Query: 117 VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYG 176
            +  M           Y C+L+ C  +  L  G +IH  ++  G + NLF    ++++Y 
Sbjct: 132 FFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYA 191

Query: 177 KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS 236
           KC  +  A ++   M  KD+V+W ++VAGYAQNG    AL +  +M+    KPD+ T+ S
Sbjct: 192 KCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVS 251

Query: 237 LLPSVTN----------------TSPENVLSVK----EMFLK-------------LDNKN 263
           +LP+V +                +  E++++V     +M+ K             + +K 
Sbjct: 252 ILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKT 311

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR 323
           +VSWN MI   A N    EA   +L+M   G  P  +++  VL AC +L  L  G  +H+
Sbjct: 312 VVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHK 371

Query: 324 YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383
            +++ KL  N+ + N+L+ MY+KC  +  A ++F+ +   + V+W +MI  Y  +G   +
Sbjct: 372 LLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKE 430

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSAC--------------------------------- 410
           A+ LF  M   G+  D    V V++A                                  
Sbjct: 431 ALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVD 490

Query: 411 --SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM---PME 465
             +  G ++  R  F +M E++ +      +  ++D  G  G  +E  DL  +M    ++
Sbjct: 491 MYAKCGAIKTARKLFDMMQERHVIT-----WNAMIDGYGTHGVGKETLDLFNEMQKGAVK 545

Query: 466 PNERIWGSLVAACCLYSNMDIGIL---AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
           PN+  + S+++AC     ++ G+L   +    ++L P    Y  ++  +    GR G + 
Sbjct: 546 PNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLL----GRAGQLD 601

Query: 523 RVRKFMNSKGIKKMPGASV 541
               F+    IK  PG SV
Sbjct: 602 DAWNFIQEMPIK--PGISV 618


>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
          Length = 530

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 278/512 (54%), Gaps = 46/512 (8%)

Query: 46  TLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           +   +H  ++    LH    +   L+  Y A G     R +FDE+  + +V    + R++
Sbjct: 27  SASSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAH 86

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLV----GLQIHCSVVKVGL 161
           V +     A+ V+ +M   G  PD       L AC G+ S       G  IH  VV  G+
Sbjct: 87  VASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGI 146

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             ++F    L+ +YG+ G L  +RRV +DMPS+  +TWN+M+  YA++G+ D A      
Sbjct: 147 VPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAY----- 201

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
                                           EMFL +  +++VSWN ++A Y       
Sbjct: 202 --------------------------------EMFLAMPRRDVVSWNTVLAGYCVAGRCR 229

Query: 282 EAVDLYLQM---EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
           EA+ L+ QM       + PN  +++++L AC     L  G  +H Y+ER ++  +  L+ 
Sbjct: 230 EALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDR 289

Query: 339 ALVDMYAKCGSLTEARTVFDQM-RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
            L+DMY KCGS+  A  VF++  R +D+ SWT++I    M G+  DA+ +F  M  +G+C
Sbjct: 290 CLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGIC 349

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
           PD +  V VL+AC+H GL++EG  YF  M  ++++ P+IEH+ C++DLLGR G+++EAY 
Sbjct: 350 PDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYS 409

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
           +I+ MPM+PN  IWG+ ++AC ++ NM++G +AA+ +  L P+     V+LS++YAKA  
Sbjct: 410 MIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQD 469

Query: 518 WGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           W  + R R+ MNS  +KK PG +S+E+  +V 
Sbjct: 470 WIGLARERREMNSMQVKKTPGCSSIELKGEVH 501


>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 531

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 288/512 (56%), Gaps = 46/512 (8%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK---NVVFFN 99
           ++KTLK+ H  +II      N    L + +   AC      R+ +   T++   N    N
Sbjct: 27  NLKTLKQSHCFMIITGLNRDN----LNVAKFIEACSNAGHLRYAYSVFTHQPFPNTYLHN 82

Query: 100 VLIR--SYVNNYLYYD-ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +IR  S V+    +  A+ VY+        PD +T+P VLK     + +  G Q+H   
Sbjct: 83  TMIRALSLVDERNAHSIAITVYRKFWAFCAKPDTFTFPFVLKIVVRVSDVWFGRQVHGQA 142

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           V  G D ++    GL+ MY  CG L +AR+V ++M  +DV  WN+++AGY + G  DEA 
Sbjct: 143 VVFGFDSSVHVVTGLIQMYSSCGGLGDARKVFDEMRVRDVNVWNALLAGYGKVGEMDEA- 201

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                            +  ++P                      +N VSW  +I+ YA 
Sbjct: 202 ---------------RGLLEMMPCWV-------------------RNAVSWTCVISGYAR 227

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           +   +EA++++ +M +  ++P+ +++ +VL AC DL +L LG +I  YV+ + +   + L
Sbjct: 228 SGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSL 287

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            NA++DMYAK G++T+A  VF+ +  ++VV+WT++I+     G G +A+ +F +M+ +G+
Sbjct: 288 NNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGV 347

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P+ + F+++LSACSH G ++ G  +F  M  +Y + P IEH+ C++DLLGRAGK+ EA 
Sbjct: 348 KPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAE 407

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           ++IK MP E N  IWGSL+AA  ++ ++D+G  A   +  L PN SG Y+LL+N+Y+  G
Sbjct: 408 EVIKSMPFESNAAIWGSLLAASNVHHDIDVGERALYQLIKLEPNNSGNYMLLANLYSNLG 467

Query: 517 RWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
           RW + + +RK M   G+KK+ G +S+E+ ++V
Sbjct: 468 RWDESRMMRKMMKGIGVKKLAGESSIEVENRV 499


>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Brachypodium distachyon]
          Length = 782

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 180/510 (35%), Positives = 281/510 (55%), Gaps = 36/510 (7%)

Query: 67  GLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF 126
           G  L+  Y   G + D   VFD +  +++V +N ++  YV+N L   AL  ++ M   G 
Sbjct: 146 GNSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMH-EGL 204

Query: 127 D--PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
               D       L AC   ++L+ G ++H  V++ GL+ ++  G  L+ MY KCG +  A
Sbjct: 205 QVQHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASA 264

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
             +   MPS+ VVTWN M+ GYA NG  +EA D   +M++   + +  T  +LL +   T
Sbjct: 265 EGMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQT 324

Query: 245 S------------------PENVL---------------SVKEMFLKLDNKNLVSWNVMI 271
                              P  VL               S + +F ++ NK LVSWN MI
Sbjct: 325 ESSLYGRSVHGYVTRSQFLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMI 384

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           A Y    M  EA+ L+L++    + P+  ++++V+PA   L  L   R++H Y+ R    
Sbjct: 385 AAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYG 444

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            N  + NA++ MYA+CG +  +R +FD+M  +DV+SW ++I  Y + GQG  A+ +FS+M
Sbjct: 445 ENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEM 504

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
             +GL P+   FVSVL+ACS +G+ +EG   F +M   Y ++P+IEH+ C+ DLLGRAG 
Sbjct: 505 KSNGLQPNESTFVSVLTACSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCMTDLLGRAGD 564

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
           + E    I+ +P+ P  RIWGSL+ A    +++DI   AA+ IF L  + +G YV+LS++
Sbjct: 565 LREVLKFIESIPITPTFRIWGSLLTASRNRNDIDIAEYAAERIFELEHDNTGCYVILSSM 624

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           YA AGRW DV+R+R  M  KG+++    S+
Sbjct: 625 YADAGRWEDVQRIRSSMMEKGLRRTDARSI 654



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 156/532 (29%), Positives = 253/532 (47%), Gaps = 77/532 (14%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+ ++ A G+M D        ++ +    NV+IR + +  L   AL  Y+ M   G  PD
Sbjct: 49  LVLSHAAAGRMHDALAAVR--SSPDAFLHNVVIRGFADAGLPEAALAAYRAMLAAGARPD 106

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL-DYNLFNGNGLVAMYGKCGCLKEARRVL 188
            +T+P V+K C+   +L  G   H + +++GL    ++ GN L+A Y K G + +A RV 
Sbjct: 107 RFTFPVVVKCCARLGALEEGRAAHSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAERVF 166

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPD-----ADTMASLLPSVT 242
           + MP +D+VTWNSMV GY  NG    ALD  REM E L+++ D     A   A  L S  
Sbjct: 167 DGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMHEGLQVQHDGVGIIAALAACCLDSAL 226

Query: 243 NTSPE----------------------------NVLSVKEMFLKLDNKNLVSWNVMIAVY 274
               E                             + S + MF  + ++ +V+WN MI  Y
Sbjct: 227 MQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGY 286

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           A N  P EA D ++QM+  G +   ++  ++L AC    + L GR +H YV R +  P++
Sbjct: 287 ALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLPHV 346

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            LE AL++MY+K G +  + T+F QM  + +VSW +MI+AY       +A+ LF ++L  
Sbjct: 347 VLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELLNQ 406

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGR----YYFKIMTEQYKLVPR--IEHFACLVD---- 444
            L PD     +V+ A    GLL + R    Y  ++   +  LV    +  +A   D    
Sbjct: 407 PLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGDVVSS 466

Query: 445 ------------------LLGRA----GKVE-EAYDLIKQMPMEPNERIWGSLVAACCLY 481
                             ++G A    GK+  E +  +K   ++PNE  + S++ AC + 
Sbjct: 467 RKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLTACSVS 526

Query: 482 SNMDIGILAADHI---FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530
              D G +  + +   + + P Q  +Y  ++++    GR GD++ V KF+ S
Sbjct: 527 GMADEGWIQFNLMQRDYGIIP-QIEHYGCMTDLL---GRAGDLREVLKFIES 574



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 164/367 (44%), Gaps = 46/367 (12%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++HA  +I   L  +  +G  L+  Y  CG +     +F  + ++ VV +N +I  Y  
Sbjct: 230 REVHA-YVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYAL 288

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    +A   +  M   G   +  T   +L AC+ + S L G  +H  V +     ++  
Sbjct: 289 NGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLPHVVL 348

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L+ MY K G +K +  +   M +K +V+WN+M+A Y     ++EA+ +  E+ +  +
Sbjct: 349 ETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELLNQPL 408

Query: 228 KPDADTMASLLPS---------------------------VTNTSPE------NVLSVKE 254
            PD  TM++++P+                           VTN          +V+S ++
Sbjct: 409 YPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGDVVSSRK 468

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F K+  K+++SWN +I  YA +     A++++ +M+ +G++PN  +  SVL AC     
Sbjct: 469 IFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLTACS---- 524

Query: 315 LLLGRKIHRYVERKKLQ------PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS- 367
            + G     +++   +Q      P +     + D+  + G L E     + +        
Sbjct: 525 -VSGMADEGWIQFNLMQRDYGIIPQIEHYGCMTDLLGRAGDLREVLKFIESIPITPTFRI 583

Query: 368 WTSMISA 374
           W S+++A
Sbjct: 584 WGSLLTA 590



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 3/174 (1%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++  +++H+  I+      N  +   +M  Y  CG +V +R +FD++  K+V+ +N +I 
Sbjct: 428 LRQCRQMHS-YIVRLDYGENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIM 486

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG-LQIHCSVVKVGLD 162
            Y  +     AL ++  M  +G  P+  T+  VL ACS S     G +Q +      G+ 
Sbjct: 487 GYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLTACSVSGMADEGWIQFNLMQRDYGII 546

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEA 215
             + +   +  + G+ G L+E  + +  +P +     W S++         D A
Sbjct: 547 PQIEHYGCMTDLLGRAGDLREVLKFIESIPITPTFRIWGSLLTASRNRNDIDIA 600



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 9/166 (5%)

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           R K  P+L+   +LV  +A  G + +A          D      +I  +  +G    A+A
Sbjct: 39  RPKRGPSLK---SLVLSHAAAGRMHDALAAVRS--SPDAFLHNVVIRGFADAGLPEAALA 93

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
            +  ML +G  PD   F  V+  C+  G LEEGR           +   +     L+   
Sbjct: 94  AYRAMLAAGARPDRFTFPVVVKCCARLGALEEGRAAHSAAIRLGLVGSEVYTGNSLLAFY 153

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAAD 492
            + G V +A  +   MP+  +   W S+V     Y +  +G LA D
Sbjct: 154 AKLGMVADAERVFDGMPVR-DIVTWNSMVDG---YVSNGLGALALD 195


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 166/468 (35%), Positives = 259/468 (55%), Gaps = 38/468 (8%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +F +I N N+  FNVLIR +        A   Y  M      PD  T+P ++KA +    
Sbjct: 75  IFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMEC 134

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           ++VG Q H  +V+ G   +++  N LV MY  CG +  A R+   MP +DVV+W SMVAG
Sbjct: 135 VVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAG 194

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           Y + G  ++A                                     +EMF ++ ++NL 
Sbjct: 195 YCKCGMVEDA-------------------------------------REMFDEMPHRNLF 217

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           +W++MI  YA N+   +A+DL+  M+  G+  N   + SV+ +C  L AL  G + H YV
Sbjct: 218 TWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYV 277

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
            +  +  NL L  ALVDMY +CG + +A  VF+++  +D +SW+S+I    + G  + A+
Sbjct: 278 VKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAI 337

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
             FS+M+  G  P  I   +VLSACSH GL+++G   ++ M   Y + PR+EH+ C+VD+
Sbjct: 338 HYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDM 397

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           LGRAGK+ EA + I +MP++PN  I G+L+ AC +Y N ++     + +  + P  SGYY
Sbjct: 398 LGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEVKPEHSGYY 457

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
           VLLSNIYA AG+W  ++ +R  M  K +KK PG S +E++ ++   ++
Sbjct: 458 VLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFSM 505



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 133/274 (48%), Gaps = 34/274 (12%)

Query: 242 TNTSPENVLSVK-EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
           T   P N+L     +F ++ N NL  +NV+I  ++  + P++A   Y QM    I P+ I
Sbjct: 61  TFHKPTNLLGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNI 120

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           +   ++ A  ++  +++G + H  + R   Q ++ +EN+LV MYA CG +  A  +F QM
Sbjct: 121 TFPFLIKASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQM 180

Query: 361 RCQDVVSWTSMISAYGMSG------------------------QGY-------DAVALFS 389
             +DVVSWTSM++ Y   G                         GY        A+ LF 
Sbjct: 181 PFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFE 240

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
            M   G+  +    VSV+S+C+H G LE G    + + + +  V  I   A LVD+  R 
Sbjct: 241 LMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTA-LVDMYWRC 299

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
           G++E+A  + +++P + +   W S++    ++ +
Sbjct: 300 GEIEKAIRVFEELP-DKDSLSWSSIIKGLAVHGH 332



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 122/240 (50%), Gaps = 8/240 (3%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y  CG + D R +FDE+ ++N+  ++++I  Y  N  +  A+ +++ M   G   +    
Sbjct: 195 YCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVM 254

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             V+ +C+   +L  G + H  VVK  +  NL  G  LV MY +CG +++A RV  ++P 
Sbjct: 255 VSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPD 314

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS-PENVLSV 252
           KD ++W+S++ G A +G   +A+    +M  L   P   T+ ++L + ++    +  L +
Sbjct: 315 KDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEI 374

Query: 253 KEMFLKLD---NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            E  +K D      L  +  ++ +       AEA +  L+M V   +PNA  + ++L AC
Sbjct: 375 YEN-MKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPV---KPNAPILGALLGAC 430



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 1/143 (0%)

Query: 53  QIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYY 112
           + ++  H+  N  +G  L+  Y  CG++     VF+E+ +K+ + ++ +I+    +   +
Sbjct: 275 EYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAH 334

Query: 113 DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYNLFNGNGL 171
            A+H +  M   GF P   T   VL ACS    +  GL+I+ ++ +  G++  L +   +
Sbjct: 335 KAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCI 394

Query: 172 VAMYGKCGCLKEARRVLNDMPSK 194
           V M G+ G L EA   +  MP K
Sbjct: 395 VDMLGRAGKLAEAENFILKMPVK 417


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 172/516 (33%), Positives = 290/516 (56%), Gaps = 43/516 (8%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD---TRHVFDEITNK 93
           +L++  ++K L ++H Q++    + +  ++   L+ +Y    ++V+   TR VFD I++ 
Sbjct: 16  LLERCSNMKELMQIHGQLLKKGTIRNQLTVS-TLLVSYARI-ELVNLAYTRVVFDSISSP 73

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           N V +N ++R+Y N+     AL +Y  M  +    + YT+P +LKACS  ++     QIH
Sbjct: 74  NTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIH 133

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
             ++K G    ++  N L+ +Y   G ++ A  + N +P++D+V+WN M+ GY + G  D
Sbjct: 134 AHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLD 193

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273
            A  + + M                       PE              KN++SW  MI  
Sbjct: 194 MAYKIFQAM-----------------------PE--------------KNVISWTTMIVG 216

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           +    M  EA+ L  QM V GI+P++I+++  L AC  L AL  G+ IH Y+E+ +++ +
Sbjct: 217 FVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKID 276

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             L   L DMY KCG + +A  VF ++  + V +WT++I    + G+G +A+  F++M  
Sbjct: 277 PVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQK 336

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           +G+ P+SI F ++L+ACSHAGL EEG+  F+ M+  Y + P +EH+ C+VDL+GRAG ++
Sbjct: 337 AGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLK 396

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA + I+ MP++PN  IWG+L+ AC L+ + ++G      +  L P+ SG Y+ L++IYA
Sbjct: 397 EAREFIESMPVKPNAAIWGALLNACQLHKHFELGKEIGKILIELDPDHSGRYIHLASIYA 456

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
            AG W  V RVR  +  +G+   PG +S+ +N  V 
Sbjct: 457 AAGEWNQVVRVRSQIKHRGLLNHPGCSSITLNGVVH 492


>gi|297796913|ref|XP_002866341.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312176|gb|EFH42600.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 534

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 174/494 (35%), Positives = 293/494 (59%), Gaps = 7/494 (1%)

Query: 54  IIINQHLHSN-----PSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           I+++ HL ++       I  KL+  Y  CG+++D R VFDE+  +++  + V+I +    
Sbjct: 36  IVLHAHLVTSGIARLTRIAAKLVSFYVECGKVLDARKVFDEMPKRDISGWVVMIGACARY 95

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
             Y ++L +++ M+  G   D +  P +LKA         G  IHC V+K   + + F  
Sbjct: 96  GYYQESLDIFREMNKEGLKLDVFIVPSLLKASRNLLDREFGKMIHCLVLKCSFESDAFIV 155

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           + L+ MY K G +  AR+V +D+  +D+V +N+M++GYA N + DEAL++ ++M+ L IK
Sbjct: 156 SSLIDMYSKFGEVVNARKVFDDLGEQDLVVFNAMISGYANNSQADEALNLVKDMKLLGIK 215

Query: 229 PDADTMASLLPSVTNTSPENVLSVKEMFLKLDN--KNLVSWNVMIAVYANNSMPAEAVDL 286
           PD  T  +L+   ++   E  +S     + LD    ++VSW  +I+   +N    +A D 
Sbjct: 216 PDIITWNALISGFSHMGNEEKVSEILELMCLDGYMPDVVSWTSIISGLVHNFQNEKAFDA 275

Query: 287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
           + QM  HG+ PN+ ++ ++LPAC  L+ +  G++IH Y     L+ +  + +AL+DMY K
Sbjct: 276 FKQMLTHGLYPNSATITTLLPACTTLANMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGK 335

Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
           CG ++EA  +F +   +  V++ SMI  Y   G    AV LF +M  +G   D + F ++
Sbjct: 336 CGFISEAMILFRKTPKKTTVTFNSMIFCYANHGLSDKAVELFDQMEATGEKLDHLTFTAI 395

Query: 407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP 466
           L+ACSHAGL + G+  F +M  +Y++ PR+EH+AC+VDLLGRAGK+ EAY+++K M MEP
Sbjct: 396 LTACSHAGLTDLGQNLFHLMQTKYRIEPRLEHYACMVDLLGRAGKLVEAYEMMKTMRMEP 455

Query: 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526
           +  +WG+L+ AC  + NM++  +AA  +  L P  SG  +LL+++YA  G W +V R++K
Sbjct: 456 DLFVWGALLGACRNHGNMELARIAAKRLAELEPENSGNGLLLTSLYADVGSWENVIRMKK 515

Query: 527 FMNSKGIKKMPGAS 540
            +  K  ++  G+S
Sbjct: 516 MIKKKRFRRFLGSS 529



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%)

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           G  +H ++    +    R+   LV  Y +CG + +AR VFD+M  +D+  W  MI A   
Sbjct: 35  GIVLHAHLVTSGIARLTRIAAKLVSFYVECGKVLDARKVFDEMPKRDISGWVVMIGACAR 94

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
            G   +++ +F +M   GL  D     S+L A
Sbjct: 95  YGYYQESLDIFREMNKEGLKLDVFIVPSLLKA 126


>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1359

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 171/537 (31%), Positives = 290/537 (54%), Gaps = 43/537 (8%)

Query: 48   KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
            +++H  ++    L ++P +   L+  Y  CG + +   VF  + +K +  +N ++ +YV 
Sbjct: 791  RQIHCDVV-KMGLDNDPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVE 849

Query: 108  NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
            N   Y AL ++  M      PD +T   V+  CS       G  +H  + K  +      
Sbjct: 850  NDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAI 909

Query: 168  GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM--ESL 225
             + L+ +Y KCGC  +A  V   M  KD+V W S+++G  +NG+F EAL V  +M  +  
Sbjct: 910  ESALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDD 969

Query: 226  RIKPDADTMASLLPSVTNTS------------------------------------PENV 249
             +KPD+D M S++ +                                         PE  
Sbjct: 970  SLKPDSDIMTSVINACAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMA 1029

Query: 250  LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            L V   F  +  +N+V+WN MI+ Y+ N++P  +++L+  M   GI P+++S+ SVL A 
Sbjct: 1030 LKV---FTSMRPENIVAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAI 1086

Query: 310  GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
               ++LL G+ +H Y  R  +  +  L+NAL+DMY KCG    A  +F +M+ + +++W 
Sbjct: 1087 SSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWN 1146

Query: 370  SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
             MI  YG  G    A++LF ++  +G  PD + F+S++SAC+H+G +EEG+ +F+IM + 
Sbjct: 1147 LMIYGYGSHGDCRTALSLFDELKKAGETPDDVTFLSLISACNHSGFVEEGKNFFEIMKQD 1206

Query: 430  YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
            Y + P++EH+A +VDLLGRAG++EEAY  IK MP E +  IW  L++A   + N+++GIL
Sbjct: 1207 YGIEPKMEHYANMVDLLGRAGRLEEAYSFIKAMPTEADSSIWLCLLSASRTHHNVELGIL 1266

Query: 490  AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMND 545
            +A+ +  + P +   YV L N+Y +AG   +  ++   M  +G++K PG S +E++D
Sbjct: 1267 SAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGEMKERGLQKQPGCSWIEVSD 1323



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/426 (29%), Positives = 199/426 (46%), Gaps = 50/426 (11%)

Query: 99  NVLIRSYVNNYLYYDALHVYKNMSVHGFDP---DCYTYPCVLKACSGSNSLLVGLQIHCS 155
           N  IR+ +    Y  ALH+Y      G  P     +T+P +LKACS   +L  G  IH S
Sbjct: 529 NSGIRALIQKGEYLQALHLYTKHD--GSSPLWTSVFTFPSLLKACSSLTNLSSGKTIHGS 586

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND-----MPSKDVVTWNSMVAGYAQNG 210
           ++ +G  Y+ F    LV MY KCG L  A +V +      + ++DV   NSM+ GY +  
Sbjct: 587 IIVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSGVSARDVTVCNSMIDGYFKFR 646

Query: 211 RFDEALDVCREMESLRIKPDADTMA---SLLPSVTNTSPENVLSVK-------------- 253
           RF E +   R M  L ++PDA +++   S+L    N   E+   +               
Sbjct: 647 RFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEGNFRREDGKQIHGYMLRNSLDGDSFL 706

Query: 254 -----EMFLKL--------------DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
                +M+ K               D  N+V WNVMI  +  + +   +++LY+  + + 
Sbjct: 707 KTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGFGGSEICESSLELYMLAKSNS 766

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
           ++  + S    L AC        GR+IH  V +  L  +  +  +L+ MY+KCG + EA 
Sbjct: 767 VKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAE 826

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
           TVF  +  + +  W +M++AY  +  GY A+ LF  M    + PDS    +V+S CS  G
Sbjct: 827 TVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFG 886

Query: 415 LLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           L + G+  + ++     +  P IE  + L+ L  + G   +AY + K M  E +   WGS
Sbjct: 887 LYDYGKSVHAELFKRPIQSTPAIE--SALLTLYSKCGCDTDAYLVFKSME-EKDMVAWGS 943

Query: 474 LVAACC 479
           L++  C
Sbjct: 944 LISGLC 949



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/455 (27%), Positives = 218/455 (47%), Gaps = 46/455 (10%)

Query: 48   KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFFNVLIRSYV 106
            K++H  ++ N  L  +  +   L+  Y   G   D   VF EI +K NVV +NV+I  + 
Sbjct: 689  KQIHGYMLRNS-LDGDSFLKTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGFG 747

Query: 107  NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
             + +   +L +Y     +       ++   L ACS S +   G QIHC VVK+GLD + +
Sbjct: 748  GSEICESSLELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDPY 807

Query: 167  NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
                L++MY KCG + EA  V + +  K +  WN+MVA Y +N     AL++   M    
Sbjct: 808  VSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQKS 867

Query: 227  IKPDADTMASLL----------------------PSVTNTSPENVL-----------SVK 253
            + PD+ T+++++                      P  +  + E+ L              
Sbjct: 868  VLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDTDAY 927

Query: 254  EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM--EVHGIEPNAISVASVLPACGD 311
             +F  ++ K++V+W  +I+    N    EA+ ++  M  +   ++P++  + SV+ AC  
Sbjct: 928  LVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACAG 987

Query: 312  LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
            L AL  G ++H  + +     N+ + ++L+D+Y+KCG    A  VF  MR +++V+W SM
Sbjct: 988  LEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAWNSM 1047

Query: 372  ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
            IS Y  +     ++ LF+ ML  G+ PDS++  SVL A S    L +G+         Y 
Sbjct: 1048 ISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSL-----HGYT 1102

Query: 432  L---VPRIEHFA-CLVDLLGRAGKVEEAYDLIKQM 462
            L   +P   H    L+D+  + G  + A ++ K+M
Sbjct: 1103 LRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKM 1137



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 188/394 (47%), Gaps = 41/394 (10%)

Query: 18   QALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGAC 77
            Q  VL   +TL +  +C  +   Y      K +HA++   + + S P+I   L+  Y  C
Sbjct: 865  QKSVLPDSFTLSNVISCCSMFGLY---DYGKSVHAELF-KRPIQSTPAIESALLTLYSKC 920

Query: 78   GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH--GFDPDCYTYPC 135
            G   D   VF  +  K++V +  LI     N  + +AL V+ +M        PD      
Sbjct: 921  GCDTDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTS 980

Query: 136  VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
            V+ AC+G  +L  GLQ+H S++K G   N+F G+ L+ +Y KCG  + A +V   M  ++
Sbjct: 981  VINACAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPEN 1040

Query: 196  VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP--------- 246
            +V WNSM++ Y++N   + ++++   M S  I PD+ ++ S+L ++++T+          
Sbjct: 1041 IVAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHG 1100

Query: 247  -------------ENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                         +N L             + +F K+ +K+L++WN+MI  Y ++     
Sbjct: 1101 YTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCRT 1160

Query: 283  AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALV 341
            A+ L+ +++  G  P+ ++  S++ AC     +  G+     +++   ++P +     +V
Sbjct: 1161 ALSLFDELKKAGETPDDVTFLSLISACNHSGFVEEGKNFFEIMKQDYGIEPKMEHYANMV 1220

Query: 342  DMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
            D+  + G L EA +    M  + D   W  ++SA
Sbjct: 1221 DLLGRAGRLEEAYSFIKAMPTEADSSIWLCLLSA 1254


>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 172/513 (33%), Positives = 282/513 (54%), Gaps = 34/513 (6%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S+  +   ++  Y  CG++   +  F  +  +++V ++  + + V      +AL +++ M
Sbjct: 361 SDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEM 420

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              G  PD      ++ AC+  +S  +G  +HC V+K  +  ++     LV+MY +C   
Sbjct: 421 QHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSF 480

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS- 240
             A  + N M  KDVV WN+++ G+ + G    AL++   ++   ++PD+ TM SLL + 
Sbjct: 481 MYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSAC 540

Query: 241 ---------------VTNTSPENVLSVK----EMFLKLDN--------------KNLVSW 267
                          +     E+ + VK    +M+ K  +              K+ VSW
Sbjct: 541 ALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSW 600

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
           NVMIA Y +N    EA+  + QM++  + PN ++  ++LPA   LS L      H  + R
Sbjct: 601 NVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHACIIR 660

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
                +  + N+L+DMYAK G L+ +   F +M  +  +SW +M+S Y M GQG  A+AL
Sbjct: 661 MGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHGQGEVALAL 720

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           FS M  + +  DS++++SVLSAC HAGL++EGR  F+ MTE++ L P +EH+AC+VDLLG
Sbjct: 721 FSLMQETHVPVDSVSYISVLSACRHAGLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLLG 780

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507
            AG  +E   LI +MP EP+ ++WG+L+ AC ++SN+ +G +A  H+  L P  + +Y++
Sbjct: 781 CAGLFDEVLCLIDKMPTEPDAQVWGALLGACKMHSNVKLGEIALHHLLKLEPRNAVHYIV 840

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           LS+IYA+ GRW D +R R  M   G+KK PG S
Sbjct: 841 LSDIYAQCGRWIDARRTRSNMTDHGLKKNPGYS 873



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 194/358 (54%), Gaps = 36/358 (10%)

Query: 88  DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLL 147
           + ITN +++ +N LIR+Y   +L+ +A+  Y+ MS  G +PD YT+  VLKAC+G+    
Sbjct: 85  NSITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFH 144

Query: 148 VGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA 207
            G+ IH  +    L+ ++F G GLV MY K G L  AR+V + MP KDV +WN+M++G +
Sbjct: 145 EGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLS 204

Query: 208 QNGRFDEALDVCREMESLR-IKPDADTMASLLPSVTNTSPENVLSVK------------- 253
           Q+    EAL++ + M+    ++PD+ ++ +L P+V+    E+V S K             
Sbjct: 205 QSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRL--EDVDSCKSIHGYVVRRCVFG 262

Query: 254 --------------------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
                               ++F ++  K+ +SW  M+A Y ++    E + L  +M+  
Sbjct: 263 VVSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRK 322

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
            I+ N ISV + + A  +   L  G+++H Y  +  +  ++ +   +V MYAKCG L +A
Sbjct: 323 HIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKA 382

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
           +  F  +  +D+V W++ +SA   +G   +A+++F +M   GL PD     S++SAC+
Sbjct: 383 KEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACA 440



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 125/490 (25%), Positives = 236/490 (48%), Gaps = 64/490 (13%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC   LD +  +     +H Q I ++ L  +  IG  L+  Y   G + + R VFD++  
Sbjct: 136 ACTGALDFHEGVA----IH-QDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPG 190

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQ 151
           K+V  +N +I     +    +AL +++ M +  G +PD  +   +  A S    +     
Sbjct: 191 KDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKS 250

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           IH  VV+  + + + + N L+ MY KCG +K A ++ + M  KD ++W +M+AGY  +G 
Sbjct: 251 IHGYVVRRCV-FGVVS-NSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGC 308

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNT------------------SPENVLSV- 252
           + E L +  EM+   IK +  ++ + + + T T                  + + V++  
Sbjct: 309 YFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATP 368

Query: 253 --------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                         KE FL L+ ++LV W+  ++       P EA+ ++ +M+  G++P+
Sbjct: 369 IVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPD 428

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
              ++S++ AC ++S+  LG+ +H YV +  +  ++ +   LV MY +C S   A T+F+
Sbjct: 429 KTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFN 488

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS------- 411
           +M  +DVV+W ++I+ +   G    A+ +F ++ +SG+ PDS   VS+LSAC+       
Sbjct: 489 RMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYL 548

Query: 412 ----HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
               H  +++ G     I +E +  V        L+D+  + G +  A +L        +
Sbjct: 549 GICFHGNIIKNG-----IESEMHVKVA-------LIDMYAKCGSLCTAENLFHLNKHVKD 596

Query: 468 ERIWGSLVAA 477
           E  W  ++A 
Sbjct: 597 EVSWNVMIAG 606



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 99/453 (21%), Positives = 219/453 (48%), Gaps = 36/453 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  CG++     +FD++  K+ + +  ++  YV++  Y++ L +   M       +
Sbjct: 268 LIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMN 327

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             +    + A + +  L  G ++H   +++G+  ++     +V+MY KCG LK+A+    
Sbjct: 328 KISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFL 387

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP--- 246
            +  +D+V W++ ++   Q G   EAL + +EM+   +KPD   ++SL+ +    S    
Sbjct: 388 SLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRL 447

Query: 247 ------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                         ++ +    +F ++  K++V+WN +I  +  
Sbjct: 448 GKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTK 507

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
              P  A++++L++++ G++P++ ++ S+L AC  L  L LG   H  + +  ++  + +
Sbjct: 508 CGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHV 567

Query: 337 ENALVDMYAKCGSLTEARTVFD-QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           + AL+DMYAKCGSL  A  +F      +D VSW  MI+ Y  +G   +A++ F++M +  
Sbjct: 568 KVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLES 627

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + P+ + FV++L A S+  +L E   +   +  +   +        L+D+  ++G++  +
Sbjct: 628 VRPNLVTFVTILPAVSYLSILREAMAFHACII-RMGFISSTLIGNSLIDMYAKSGQLSYS 686

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
                +M        W ++++   ++   ++ +
Sbjct: 687 EKCFHEME-NKGTISWNAMLSGYAMHGQGEVAL 718



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 180/405 (44%), Gaps = 43/405 (10%)

Query: 11  FSTTKPVQALVLSTQYTLLSG--DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGL 68
            S  + +Q   L    T+LS    AC +I         L K+    +I   + S+ S+  
Sbjct: 414 LSIFQEMQHEGLKPDKTILSSLVSACAEI-----SSSRLGKMMHCYVIKADMGSDISVAT 468

Query: 69  KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
            L+  Y  C   +    +F+ +  K+VV +N LI  +        AL ++  + + G  P
Sbjct: 469 TLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQP 528

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D  T   +L AC+  + L +G+  H +++K G++  +     L+ MY KCG L  A  + 
Sbjct: 529 DSGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLF 588

Query: 189 N-DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS-- 245
           + +   KD V+WN M+AGY  NG  +EA+    +M+   ++P+  T  ++LP+V+  S  
Sbjct: 589 HLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSIL 648

Query: 246 ------------------------------PENVLSVKEM-FLKLDNKNLVSWNVMIAVY 274
                                             LS  E  F +++NK  +SWN M++ Y
Sbjct: 649 REAMAFHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGY 708

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR-YVERKKLQPN 333
           A +     A+ L+  M+   +  +++S  SVL AC     +  GR I +   E+  L+P+
Sbjct: 709 AMHGQGEVALALFSLMQETHVPVDSVSYISVLSACRHAGLIQEGRNIFQSMTEKHNLEPS 768

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGM 377
           +     +VD+    G   E   + D+M  + D   W +++ A  M
Sbjct: 769 MEHYACMVDLLGCAGLFDEVLCLIDKMPTEPDAQVWGALLGACKM 813



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 170/371 (45%), Gaps = 79/371 (21%)

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT---- 244
           N + +  ++ WNS++  Y++   F EA+   + M  + ++PD  T   +L + T      
Sbjct: 85  NSITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFH 144

Query: 245 ----------SPE-------------------NVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
                     S E                   ++ + +++F K+  K++ SWN MI+  +
Sbjct: 145 EGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLS 204

Query: 276 NNSMPAEAVDLYLQMEV-HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
            +S P EA++++ +M++  G+EP+++S+ ++ PA   L  +   + IH YV R+ +    
Sbjct: 205 QSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFG-- 262

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM--- 391
            + N+L+DMY+KCG +  A  +FDQM  +D +SW +M++ Y   G  ++ + L  +M   
Sbjct: 263 VVSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRK 322

Query: 392 --------------------------------LMSGLCPDSIAFVSVLSACSHAGLLEEG 419
                                           L  G+  D +    ++S  +  G L++ 
Sbjct: 323 HIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKA 382

Query: 420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME---PNERIWGSLVA 476
           + +F +  E   LV     ++  +  L +AG   EA  + ++M  E   P++ I  SLV+
Sbjct: 383 KEFF-LSLEGRDLVV----WSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVS 437

Query: 477 ACCLYSNMDIG 487
           AC   S+  +G
Sbjct: 438 ACAEISSSRLG 448



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 162/347 (46%), Gaps = 27/347 (7%)

Query: 24  TQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT 83
           T  +LLS  AC  + D Y  I      H  II N  + S   + + L+  Y  CG +   
Sbjct: 532 TMVSLLS--ACALLDDLYLGIC----FHGNIIKNG-IESEMHVKVALIDMYAKCGSLCTA 584

Query: 84  RHVFDEITNKNV---VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC 140
            ++F    NK+V   V +NV+I  Y++N    +A+  +  M +    P+  T+  +L A 
Sbjct: 585 ENLFH--LNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAV 642

Query: 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWN 200
           S  + L   +  H  ++++G   +   GN L+ MY K G L  + +  ++M +K  ++WN
Sbjct: 643 SYLSILREAMAFHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTISWN 702

Query: 201 SMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD 260
           +M++GYA +G+ + AL +   M+   +  D+ +  S+L +  +     +   + +F  + 
Sbjct: 703 AMLSGYAMHGQGEVALALFSLMQETHVPVDSVSYISVLSACRHAGL--IQEGRNIFQSMT 760

Query: 261 NKN-----LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
            K+     +  +  M+ +     +  E + L  +M     EP+A    ++L AC   S +
Sbjct: 761 EKHNLEPSMEHYACMVDLLGCAGLFDEVLCLIDKMPT---EPDAQVWGALLGACKMHSNV 817

Query: 316 LLGR-KIHRYVERKKLQP-NLRLENALVDMYAKCGSLTEARTVFDQM 360
            LG   +H  +   KL+P N      L D+YA+CG   +AR     M
Sbjct: 818 KLGEIALHHLL---KLEPRNAVHYIVLSDIYAQCGRWIDARRTRSNM 861


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 177/519 (34%), Positives = 285/519 (54%), Gaps = 36/519 (6%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           IG  L+  Y    ++ + R VF ++  K+ V +N +I  Y     +  ++ ++ +M + G
Sbjct: 259 IGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-IDG 317

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           F PD  +    ++AC  S  L VG  +H  ++  G + +    N L+ MY KCG L  A+
Sbjct: 318 FVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQ 377

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            V +    KD VTWNS++ GY Q+G + E L+  + M+  R KPD+ T   LL   +  +
Sbjct: 378 EVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLA 436

Query: 246 PEN-----------------------VLSVK----------EMFLKLDNKNLVSWNVMIA 272
             N                       +L V           ++F  +   +++SWN +IA
Sbjct: 437 DINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIA 496

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
              +         +  +M   G+ P+  +V  +LP C  L+    G++IH Y+ +   + 
Sbjct: 497 SSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFES 556

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           N+ + NAL++MY+KCGSL     VF  M+ +DVV+WT++ISA+GM G+G  A+  F  M 
Sbjct: 557 NVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDME 616

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
           +SG+ PDS+AF++ + ACSH+G+++EG  +F  M   Y L PR+EH+AC+VDLL R+G +
Sbjct: 617 LSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLL 676

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
            +A + I  MPM+P+  +WG+L++AC    N +I    +  I  L  + +GYYVL+SNIY
Sbjct: 677 AQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIY 736

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           A  G+W  VK VR  M +KG+KK PG+S +E+  +V + 
Sbjct: 737 ATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVF 775



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 145/521 (27%), Positives = 247/521 (47%), Gaps = 57/521 (10%)

Query: 7   LCRHFSTT-KPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPS 65
            C +F+ T +P Q  + S+    LS           P ++T+  L    II   L  +  
Sbjct: 6   FCSNFNNTPEPSQEFLRSSLLKTLSS------AKNTPQLRTVHSL----IITSGLSLSVI 55

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEIT-NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
              KL+  Y      + +  VF  I+   NV  +N +IR+  +N L+  AL  Y  M   
Sbjct: 56  FSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREK 115

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
              PD +T+P V+ +C+    L +G  +H   +++G + +L+ GN L+ MY +   L  A
Sbjct: 116 KLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNA 175

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           R V  +M ++D V+WNS+++GY  NG +++ALD+  +     + PD  TM+S+L +  + 
Sbjct: 176 RYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSL 235

Query: 245 SP---------------------------------ENVLSVKEMFLKLDNKNLVSWNVMI 271
                                              E +   + +F K+  K+ V+WN MI
Sbjct: 236 MAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMI 295

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
             YA       +V L++ M + G  P+ +S+ S + ACG    L +G+ +H+Y+     +
Sbjct: 296 CGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFE 354

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            +    N L+DMYAKCG L  A+ VFD  +C+D V+W S+I+ Y  SG   + +  F KM
Sbjct: 355 CDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESF-KM 413

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA--CLVDLLGRA 449
           +     PDS+ FV +LS  S    + +GR    I  +  K     E      L+D+  + 
Sbjct: 414 MKMERKPDSVTFVLLLSIFSQLADINQGR---GIHCDVIKFGFEAELIIGNSLLDVYAKC 470

Query: 450 GKVEEAYDLIKQMP-MEPNERI-WGSLVAACCLYSNMDIGI 488
           G+++   DL+K    M  ++ I W +++A+   + +  +G 
Sbjct: 471 GEMD---DLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGF 508



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 232/491 (47%), Gaps = 58/491 (11%)

Query: 32  DACNDILDKYPDIKTLKKLHAQIIINQH-----LHSNPSIGLKLMRTYGACGQMVDTRHV 86
           ++C  ILD          L    I+++H       S+  IG  L+  Y     + + R+V
Sbjct: 129 NSCARILD----------LELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYV 178

Query: 87  FDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL 146
           F+E++N++ V +N LI  Y +N  + DAL +Y    + G  PDC+T   VL AC    ++
Sbjct: 179 FEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAV 238

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY 206
             G+ +H  + K+G+  ++  GNGL++MY K   L+EARRV + M  KD VTWN+M+ GY
Sbjct: 239 KEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGY 298

Query: 207 AQNGRFDEALDV---------------------CREMESLRIKP-----------DADTM 234
           AQ GR + ++ +                     C +   L++             + DT+
Sbjct: 299 AQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTV 358

Query: 235 ASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
           A  +         ++L+ +E+F     K+ V+WN +I  Y  +    E ++ +  M++  
Sbjct: 359 ACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER 418

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
            +P++++   +L     L+ +  GR IH  V +   +  L + N+L+D+YAKCG + +  
Sbjct: 419 -KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLL 477

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            VF  M   D++SW ++I++            + ++M   GL PD    + +L  CS   
Sbjct: 478 KVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLA 537

Query: 415 LLEEGR----YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI 470
           +  +G+    Y FK   E    +        L+++  + G +E    + K M  E +   
Sbjct: 538 VRRQGKEIHGYIFKSGFESNVPIGN-----ALIEMYSKCGSLENCIKVFKYMK-EKDVVT 591

Query: 471 WGSLVAACCLY 481
           W +L++A  +Y
Sbjct: 592 WTALISAFGMY 602


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 176/508 (34%), Positives = 286/508 (56%), Gaps = 12/508 (2%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG--ACGQMVDTRHVFDEITNKNVVFFNVL 101
           ++ L +LHA ++ + H   +   G  L++ Y             VF  I N NV  +N++
Sbjct: 46  LQYLTQLHALVLRSGHFQDHYVSG-ALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIV 104

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           I+  + N   + A++ Y  M +    P+ +TYP + KACS + ++  G QIH  VVK G+
Sbjct: 105 IKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGI 163

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             ++   +  + MY   G L++AR++     S DVV WN+M+ GY + G  + A  +  +
Sbjct: 164 GSDVHIKSAGIQMYASFGRLEDARKMFYSGES-DVVCWNTMIDGYLKCGVLEAAKGLFAQ 222

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
           M    I    + M + L    N         +++F ++  ++ +SW+ M+  Y +     
Sbjct: 223 MPVKNIG-SWNVMINGLAKGGNLG-----DARKLFDEMSERDEISWSSMVDGYISAGRYK 276

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
           EA++++ QM+     P    ++SVL AC ++ A+  GR +H Y++R  ++ +  L  AL+
Sbjct: 277 EALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALL 336

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           DMYAKCG L     VF++M+ +++ +W +MI    + G+  DA+ LFSK+    + P+ I
Sbjct: 337 DMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGI 396

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
             V VL+AC+HAG +++G   F+ M E Y + P +EH+ C+VDLLGR+G   EA DLI  
Sbjct: 397 TLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINS 456

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
           MPM+PN  +WG+L+ AC ++ N D+       +  L P  SG YVLLSNIYAK GR+ DV
Sbjct: 457 MPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDV 516

Query: 522 KRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            ++RK M ++GIK +PG S V++N  V 
Sbjct: 517 SKIRKLMKNRGIKTVPGVSIVDLNGTVH 544


>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
          Length = 530

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 278/512 (54%), Gaps = 46/512 (8%)

Query: 46  TLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           +   +H  ++    LH    +   L+  Y A G     R +FDE+  + +V    + R++
Sbjct: 27  SASSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAH 86

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLV----GLQIHCSVVKVGL 161
           V +     A+ V+ +M   G  PD       L AC G+ S       G  IH  VV  G+
Sbjct: 87  VASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGI 146

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             ++F    L+ +YG+ G L  +RRV +DMPS+  +TWN+M+  YA++G+ D A      
Sbjct: 147 VPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAY----- 201

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
                                           EMFL +  +++VSWN ++A Y       
Sbjct: 202 --------------------------------EMFLAMPRRDVVSWNTVLAGYCVAGRCR 229

Query: 282 EAVDLYLQM---EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
           EA+ L+ QM       + PN  +++++L AC     L  G  +H Y+ER ++  +  L+ 
Sbjct: 230 EALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDR 289

Query: 339 ALVDMYAKCGSLTEARTVFDQM-RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
            L+DMY KCGS+  A  VF++  R +D+ SWT++I    M G+  DA+ +F  M  +G+C
Sbjct: 290 CLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGIC 349

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
           PD +  V VL+AC+H GL++EG  YF  M  ++++ P+IEH+ C++DLLGR G+++EAY 
Sbjct: 350 PDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRIGRLQEAYS 409

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
           +I+ MPM+PN  IWG+ ++AC ++ NM++G +AA+ +  L P+     V+LS++YAKA  
Sbjct: 410 MIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQD 469

Query: 518 WGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           W  + R R+ MNS  +KK PG +S+E+  +V 
Sbjct: 470 WIGLARERREMNSMQVKKTPGCSSIELKGEVH 501


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 180/544 (33%), Positives = 292/544 (53%), Gaps = 64/544 (11%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFFNVLIRSYV 106
           K++HA  I  Q   SN  +   L+  Y  C  +++  ++F+   +K N V +  ++  Y 
Sbjct: 158 KQIHAHAIKTQ-FDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYS 216

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
            N   + A+  +++M   G + + +T+P +L AC   ++   G Q+H  +V+ G   N+F
Sbjct: 217 QNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVF 276

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
            G+ LV MY KCG L  ARR+L  M   D V+WNSM+ G  + G  +EAL + R M    
Sbjct: 277 VGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRH 336

Query: 227 IKPDADTMASLLPSVT------NTSPENVLSVK--------------------------- 253
           +K D  T  S+L   +      N    + L VK                           
Sbjct: 337 MKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAF 396

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           ++F K+ +K+++SW  ++    +N    EA+ L+ +M + GI P+ I +A+VL AC +L+
Sbjct: 397 DVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELT 456

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
            L  G+++H    +  L  +L ++N+LV MYAKCG + +A  VFD M  QDV++WT++I 
Sbjct: 457 VLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIV 516

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
            Y  +G+G D                            HAGL+E GR YF+ M E Y + 
Sbjct: 517 GYAQNGRGRD----------------------------HAGLVEHGRSYFQSMEEVYGIK 548

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P  EH+AC++DLLGR+GK+ EA +L+ QM ++P+  +W +L+AAC ++ N+++G  AA++
Sbjct: 549 PGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANN 608

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
           +F L P  +  YVLLSN+Y+ AG+W +  + R+ M  +G+ K PG S +EM+ +V     
Sbjct: 609 LFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMS 668

Query: 553 PLRS 556
             RS
Sbjct: 669 EDRS 672



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 201/442 (45%), Gaps = 36/442 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y   G++ + R +F E   ++ + ++ LI  Y       +AL ++  M   G  P+
Sbjct: 78  MIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPN 137

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +T+  VL+ CS    L  G QIH   +K   D N F   GLV MY KC C+ EA  +  
Sbjct: 138 QFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFE 197

Query: 190 DMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP-- 246
             P K + V W +MV GY+QNG   +A++  R+M    I+ +  T  S+L +  + S   
Sbjct: 198 LAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACG 257

Query: 247 ---------------ENVL----------------SVKEMFLKLDNKNLVSWNVMIAVYA 275
                           NV                 + + M   ++  + VSWN MI    
Sbjct: 258 FGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCV 317

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
              +  EA+ L+  M +  ++ +  +  SVL     +  +     +H  + +   +    
Sbjct: 318 RQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKL 377

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           + NALVDMYAK G    A  VF++M  +DV+SWTS+++    +G   +A+ LF +M + G
Sbjct: 378 VNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMG 437

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + PD I   +VLSAC+   +LE G+       +   L   +     LV +  + G +E+A
Sbjct: 438 IHPDQIVIAAVLSACAELTVLEFGKQVHANFLKS-GLGSSLSVDNSLVSMYAKCGCIEDA 496

Query: 456 YDLIKQMPMEPNERIWGSLVAA 477
             +   M ++ +   W +L+  
Sbjct: 497 NKVFDSMEIQ-DVITWTALIVG 517



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 165/381 (43%), Gaps = 75/381 (19%)

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD------------- 213
           + N +++   KCG + +AR++ + MP +D  +WN+M+  YA +GR +             
Sbjct: 43  DSNWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRS 102

Query: 214 ------------------EALDVCREMESLRIKPDADTMASLLP---------------- 239
                             EAL++  EM+    +P+  T  S+L                 
Sbjct: 103 CITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHA 162

Query: 240 -SVTNTSPENVLSVK---EMFLKL--------------DNKNLVSWNVMIAVYANNSMPA 281
            ++      N   V    +M+ K               D +N V W  M+  Y+ N    
Sbjct: 163 HAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGH 222

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
           +A++ +  M   GIE N  +  S+L ACG +SA   G ++H  + R     N+ + +ALV
Sbjct: 223 KAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALV 282

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           DMY+KCG L+ AR + + M   D VSW SMI      G G +A++LF  M +  +  D  
Sbjct: 283 DMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEF 342

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMT----EQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
            + SVL+  S    +        ++     E YKLV        LVD+  + G  + A+D
Sbjct: 343 TYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNN-----ALVDMYAKRGYFDYAFD 397

Query: 458 LIKQMPMEPNERIWGSLVAAC 478
           + ++M  + +   W SLV  C
Sbjct: 398 VFEKMT-DKDVISWTSLVTGC 417


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 177/546 (32%), Positives = 303/546 (55%), Gaps = 66/546 (12%)

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
           ++ + L+  Y  C ++ D R +FD++  +++V + V+I  Y       ++L +++ M   
Sbjct: 194 NLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREE 253

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G  PD      V+ AC+   ++     I   + +     ++  G  ++ MY KCGC++ A
Sbjct: 254 GVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESA 313

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           R + + M  K+V++W++M+A Y  +G+  +ALD+ R M S  + PD  T+ASLL +  N 
Sbjct: 314 REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINC 373

Query: 245 SPENVLSVKEM-------------------------FLKLDN----------KNLVSWNV 269
              N+  V+++                         +  LD+          ++ VSW+V
Sbjct: 374 --RNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSV 431

Query: 270 MIAVYA-----------------------NNSMPA-----EAVDLYLQMEVHGIEPNAIS 301
           M+  +A                       N ++P      E++ L+ +M   G+ P+ ++
Sbjct: 432 MVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVA 491

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           + +V+ AC  L A+   R I  Y++RKK Q ++ L  A++DM+AKCG +  AR +FD+M 
Sbjct: 492 MVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRME 551

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            ++V+SW++MI+AYG  GQG  A+ LF  ML SG+ P+ I  VS+L ACSHAGL+EEG  
Sbjct: 552 EKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLR 611

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
           +F +M E Y +   ++H+ C+VDLLGRAG+++EA  LI+ M +E +E +WG+ + AC  +
Sbjct: 612 FFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTH 671

Query: 482 SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS- 540
            ++ +   AA  +  L P   G+Y+LLSNIYA AGRW DV + R  M+ + +KK+PG + 
Sbjct: 672 KDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTW 731

Query: 541 VEMNDQ 546
           +E++++
Sbjct: 732 IEVDNK 737



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 89/272 (32%), Positives = 146/272 (53%), Gaps = 12/272 (4%)

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
           Q+H      G+  N+   N L+  Y     L +A  + + M  +D V+W+ MV G+A+ G
Sbjct: 99  QVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 158

Query: 211 RFDEALDVCREMESLRIKPDADTMASLLPSVTN------------TSPENVLSVKEMFLK 258
            +       RE+     +PD  T+  ++ +  +                 +   + +F K
Sbjct: 159 DYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMALVDMYVKCREIEDARFLFDK 218

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +  ++LV+W VMI  YA      E++ L+ +M   G+ P+ +++ +V+ AC  L A+   
Sbjct: 219 MQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKA 278

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           R I  Y++RKK Q ++ L  A++DMYAKCG +  AR +FD+M  ++V+SW++MI+AYG  
Sbjct: 279 RIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 338

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
           GQG  A+ LF  ML SG+ PD I   S+L AC
Sbjct: 339 GQGRKALDLFRMMLSSGMLPDKITLASLLYAC 370



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 120/496 (24%), Positives = 220/496 (44%), Gaps = 85/496 (17%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++  ++++HAQ  ++  L  N  +  KL+  Y     + D   +FD +  ++ V ++V++
Sbjct: 93  NLTQVRQVHAQASVHGML-ENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMV 151

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             +     Y +    ++ +   G  PD YT P V++AC      L  LQ+          
Sbjct: 152 GGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRD----LKNLQM---------- 197

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
                   LV MY KC  +++AR + + M  +D+VTW  M+ GYA+ G+ +E+L +  +M
Sbjct: 198 -------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM 250

Query: 223 ESLRIKPDADTMASLLPSVTNTSPEN---------------------------------V 249
               + PD   M +++ +       +                                 V
Sbjct: 251 REEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCV 310

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            S +E+F +++ KN++SW+ MIA Y  +    +A+DL+  M   G+ P+ I++AS+L AC
Sbjct: 311 ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYAC 370

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
            +   L   R++H       +  NL + N LV  Y+   +L +A  +FD M  +D VSW+
Sbjct: 371 INCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWS 430

Query: 370 SMISAYG----------------------------MSGQGYDAVALFSKMLMSGLCPDSI 401
            M+  +                               G   +++ LF KM   G+ PD +
Sbjct: 431 VMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKV 490

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
           A V+V+ AC+  G + + R       ++ K    +     ++D+  + G VE A ++  +
Sbjct: 491 AMVTVVFACAKLGAMHKAR-TIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDR 549

Query: 462 MPMEPNERIWGSLVAA 477
           M  E N   W +++AA
Sbjct: 550 ME-EKNVISWSAMIAA 564



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 25/208 (12%)

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           S L  C +L+ +   R++H       +  N+ + N L+  Y+   +L +A  +FD M  +
Sbjct: 86  SALVNCRNLTQV---RQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVR 142

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL------- 416
           D VSW+ M+  +   G   +    F +++  G  PD+     V+ AC     L       
Sbjct: 143 DSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMALVDM 202

Query: 417 -------EEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME---P 466
                  E+ R+ F  M E+  LV     +  ++      GK  E+  L ++M  E   P
Sbjct: 203 YVKCREIEDARFLFDKMQER-DLVT----WTVMIGGYAECGKANESLVLFEKMREEGVVP 257

Query: 467 NERIWGSLVAACCLYSNMDIGILAADHI 494
           ++    ++V AC     M    +  D+I
Sbjct: 258 DKVAMVTVVFACAKLGAMHKARIIDDYI 285


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 168/501 (33%), Positives = 280/501 (55%), Gaps = 35/501 (6%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +F+EI +K+ V FN LI  Y  + LY +A+H++  M   G  P  +T+  VLKA  G + 
Sbjct: 200 LFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHD 259

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
             +G Q+H   V  G   +   GN ++  Y K   + E R + N+MP  D V++N +++ 
Sbjct: 260 FALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISS 319

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS----------------PENV 249
           Y+Q  +++E+L++ REM+ +         A++L    N S                 +++
Sbjct: 320 YSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSI 379

Query: 250 LSVKE-----------------MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
           L V                   +F  L  ++ VSW  +I+ Y    +    + L+ +M  
Sbjct: 380 LHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRG 439

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
             +  +  + A+VL A    ++LLLG+++H ++ R     N+   + LVDMYAKCGS+ +
Sbjct: 440 ANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKD 499

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           A  VF++M  ++ VSW ++ISAY  +G G  A+  F+KM+ SGL PDS++ + VL ACSH
Sbjct: 500 AVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSH 559

Query: 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG 472
            G +E+G  +F+ M+  Y + P+ +H+AC++DLLGR G+  EA  L+ +MP EP+E +W 
Sbjct: 560 CGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWS 619

Query: 473 SLVAACCLYSNMDIGILAADHIFHLAP-NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531
           S++ AC +Y N  +   AA+ +F +     +  YV +SNIYA AG+W +V+ V+K M  +
Sbjct: 620 SVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRER 679

Query: 532 GIKKMPGAS-VEMNDQVQIIA 551
           GIKK+P  S VE+N ++ + +
Sbjct: 680 GIKKVPAYSWVEVNHKIHVFS 700



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/502 (25%), Positives = 227/502 (45%), Gaps = 46/502 (9%)

Query: 14  TKPVQALVLSTQY---TLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKL 70
           T+ V A ++ T +   T  S     D+L +      LK      + ++  H N      +
Sbjct: 28  TRRVDARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALK------VYDEMPHKNTVSTNTM 81

Query: 71  MRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDC 130
           +  Y   G +   RH+FD + ++ VV + +L+  Y  N  + +A  +++ M      PD 
Sbjct: 82  ISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDY 141

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG--NGLVAMYGKCGCLKEARRVL 188
            T+  +L  C+ +       Q+H   VK+G D NLF    N L+  Y +   L  A  + 
Sbjct: 142 VTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLF 201

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN----- 243
            ++  KD VT+N+++ GY ++G + EA+ +  +M     KP   T + +L +V       
Sbjct: 202 EEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFA 261

Query: 244 ----------------------------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
                                       +  + VL  + +F ++   + VS+NV+I+ Y+
Sbjct: 262 LGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYS 321

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
                 E+++L+ +M+  G +      A++L    +LS+L +GR++H           L 
Sbjct: 322 QAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILH 381

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           + N+LVDMYAKC    EA  +F  +  +  VSWT++IS Y   G     + LF+KM  + 
Sbjct: 382 VGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGAN 441

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           L  D   F +VL A +    L  G+     +     L   +   + LVD+  + G +++A
Sbjct: 442 LRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNL-ENVFSGSGLVDMYAKCGSIKDA 500

Query: 456 YDLIKQMPMEPNERIWGSLVAA 477
             + ++MP + N   W +L++A
Sbjct: 501 VQVFEEMP-DRNAVSWNALISA 521



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 201/428 (46%), Gaps = 37/428 (8%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D    ++LH  + +      + S+G +++  Y    ++++TR++F+E+   + V +NV+I
Sbjct: 259 DFALGQQLHG-LSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVI 317

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            SY     Y ++L++++ M   GFD   + +  +L   +  +SL VG Q+HC  +    D
Sbjct: 318 SSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATAD 377

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
             L  GN LV MY KC    EA  +   +  +  V+W ++++GY Q G     L +  +M
Sbjct: 378 SILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKM 437

Query: 223 ESLRIKPDADTMASLLPS-----------------VTNTSPENVLS-------------- 251
               ++ D  T A++L +                 + + + ENV S              
Sbjct: 438 RGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSI 497

Query: 252 --VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
               ++F ++ ++N VSWN +I+ YA+N     A+  + +M   G++P+++S+  VL AC
Sbjct: 498 KDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIAC 557

Query: 310 GDLSALLLGRKIHRYVER-KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVS 367
                +  G +  + +     + P  +    ++D+  + G   EA  + D+M  + D + 
Sbjct: 558 SHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIM 617

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W+S+++A  +      A     ++       D+ A+VS+ +  + AG  E  R+  K M 
Sbjct: 618 WSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMR 677

Query: 428 EQ-YKLVP 434
           E+  K VP
Sbjct: 678 ERGIKKVP 685


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 185/561 (32%), Positives = 289/561 (51%), Gaps = 69/561 (12%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +GL+L+R     G     R +FD I   +    + LI +   + L  +A+ +Y ++   G
Sbjct: 14  LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 73

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             PD   +    KAC+ S   L   ++H    + G+  ++F GN L+  YGKC C++ AR
Sbjct: 74  IKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGAR 133

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           RV +D+  +DVV+W S+ + Y + G   + +DV REM    +KP+  T++S+LP+     
Sbjct: 134 RVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELK 193

Query: 246 P------------------------------ENVLSVKEMFLKLD---NKNLVSWN-VMI 271
                                             LSV+E  +  D   ++++VSWN V+ 
Sbjct: 194 DLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLT 253

Query: 272 AVYAN----------------------------------NSMPAEAVDLYLQMEVHGIEP 297
           A + N                                  N    EAV+++ +M+  G +P
Sbjct: 254 AYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKP 313

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           N I+++S+LPAC     L +G++IH YV R     +L    AL+ MYAKCG L  +R VF
Sbjct: 314 NEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVF 373

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           D MR +DVV+W +MI A  M G G +A+ LF KML+S + P+S+ F  VLS CSH+ L+E
Sbjct: 374 DMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVE 433

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           EG   F  M   + + P   H++C+VD+  RAG++ EAY  I+ MPMEP    WG+L+AA
Sbjct: 434 EGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAA 493

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
           C +Y N+++  ++A  +F + PN  G YV L NI   A  W +  +VR  M  +GI K P
Sbjct: 494 CRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTP 553

Query: 538 GAS-VEMNDQVQIIALPLRSS 557
           G S +++ ++V    +  +S+
Sbjct: 554 GCSWLQVGNKVHTFVVGDKSN 574


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 180/505 (35%), Positives = 269/505 (53%), Gaps = 34/505 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS-VHGFDP 128
           L+  Y  CG + + R +FD    KNVV +N +I  Y     +     + + M        
Sbjct: 340 LVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRV 399

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           +  T   VL ACSG + LL   +IH    + G   +    N  VA Y KC  L  A RV 
Sbjct: 400 NEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVF 459

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL---------- 238
             M  K V +WN+++  +AQNG   ++LD+   M    + PD  T+ SLL          
Sbjct: 460 CGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLR 519

Query: 239 --PSVTNTSPENVLSVKE---------------------MFLKLDNKNLVSWNVMIAVYA 275
               +      N L + E                     +F K++NK+LV WNVMI  ++
Sbjct: 520 CGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFS 579

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            N +P EA+D + QM   GI+P  I+V  VL AC  +SAL LG+++H +  +  L  +  
Sbjct: 580 QNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAF 639

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           +  AL+DMYAKCG + +++ +FD++  +D   W  +I+ YG+ G G  A+ LF  M   G
Sbjct: 640 VTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKG 699

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
             PDS  F+ VL AC+HAGL+ EG  Y   M   Y + P++EH+AC+VD+LGRAG++ EA
Sbjct: 700 GRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEA 759

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
             L+ +MP EP+  IW SL+++C  Y +++IG   +  +  L PN++  YVLLSN+YA  
Sbjct: 760 LKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGL 819

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS 540
           G+W +V++VR+ M   G+ K  G S
Sbjct: 820 GKWDEVRKVRQRMKENGLHKDAGCS 844



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 206/424 (48%), Gaps = 38/424 (8%)

Query: 41  YPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           + +I   +K+HA +  +  L ++  +  +++  Y ACG   D+R VFD    K++  +N 
Sbjct: 105 HKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNA 164

Query: 101 LIRSYVNNYLYYDALHVY-KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
           L+  Y  N L+ DA+ ++ + +S     PD +T PCV KAC+G   + +G  +H   +K 
Sbjct: 165 LLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKA 224

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G   + F GN L+AMYGKCG ++ A +V   M ++++V+WNS++   ++NG F E   V 
Sbjct: 225 GGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVF 284

Query: 220 REM---ESLRIKPDADTMASLLPS--------------------------VTNTSPENVL 250
           + +   E   + PD  TM +++P+                            N S  ++ 
Sbjct: 285 KRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMY 344

Query: 251 S-------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME-VHGIEPNAISV 302
           S        + +F     KN+VSWN +I  Y+         +L  +M+    +  N ++V
Sbjct: 345 SKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTV 404

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            +VLPAC     LL  ++IH Y  R     +  + NA V  YAKC SL  A  VF  M  
Sbjct: 405 LNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEG 464

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           + V SW ++I A+  +G    ++ LF  M+ SG+ PD     S+L AC+    L  G+  
Sbjct: 465 KTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEI 524

Query: 423 FKIM 426
              M
Sbjct: 525 HGFM 528



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 109/452 (24%), Positives = 192/452 (42%), Gaps = 73/452 (16%)

Query: 46  TLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           +LK++H     +  L  +  +    +  Y  C  +     VF  +  K V  +N LI ++
Sbjct: 419 SLKEIHGYAFRHGFL-KDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAH 477

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
             N     +L ++  M   G DPD +T   +L AC+    L  G +IH  +++ GL+ + 
Sbjct: 478 AQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDE 537

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           F G  L+++Y +C  +   + + + M +K +V WN M+ G++QN    EALD  R+M S 
Sbjct: 538 FIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSG 597

Query: 226 RIKPDADTMASLLPSVTNTSP-----------------ENVL----------------SV 252
            IKP    +  +L + +  S                  E+                    
Sbjct: 598 GIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQS 657

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           + +F +++ K+   WNV+IA Y  +    +A++L+  M+  G  P++ +   VL AC   
Sbjct: 658 QNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHA 717

Query: 313 SALLLGRK-IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
             +  G K + +      ++P L     +VDM  + G LTEA  + ++M  +        
Sbjct: 718 GLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDE-------- 769

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
                                     PDS  + S+LS+C + G LE G    K + E   
Sbjct: 770 --------------------------PDSGIWSSLLSSCRNYGDLEIGEEVSKKLLE--- 800

Query: 432 LVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           L P + E++  L +L    GK +E   + ++M
Sbjct: 801 LEPNKAENYVLLSNLYAGLGKWDEVRKVRQRM 832



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 162/319 (50%), Gaps = 12/319 (3%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H  ++ N  L  +  IG+ LM  Y  C  M+  + +FD++ NK++V +NV+I  +  
Sbjct: 522 KEIHGFMLRNG-LELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQ 580

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N L  +AL  ++ M   G  P       VL ACS  ++L +G ++H   +K  L  + F 
Sbjct: 581 NELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFV 640

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L+ MY KCGC+++++ + + +  KD   WN ++AGY  +G   +A+++   M++   
Sbjct: 641 TCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGG 700

Query: 228 KPDADTMASLLPSVTNTS--PENVLSVKEMF-LKLDNKNLVSWNVMIAVYANNSMPAEAV 284
           +PD+ T   +L +  +     E +  + +M  L      L  +  ++ +        EA+
Sbjct: 701 RPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEAL 760

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN--ALVD 342
            L  +M     EP++   +S+L +C +   L +G ++ + +   +L+PN + EN   L +
Sbjct: 761 KLVNEMP---DEPDSGIWSSLLSSCRNYGDLEIGEEVSKKL--LELEPN-KAENYVLLSN 814

Query: 343 MYAKCGSLTEARTVFDQMR 361
           +YA  G   E R V  +M+
Sbjct: 815 LYAGLGKWDEVRKVRQRMK 833



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 112/228 (49%), Gaps = 9/228 (3%)

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGD 311
           + +F     K+L  +N +++ Y+ N++  +A+ L+L++     + P+  ++  V  AC  
Sbjct: 148 RGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAG 207

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           ++ + LG  +H    +     +  + NAL+ MY KCG +  A  VF+ MR +++VSW S+
Sbjct: 208 VADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSV 267

Query: 372 ISAYGMSGQGYDAVALFSKMLMS---GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
           + A   +G   +   +F ++L+S   GL PD    V+V+ AC+  G +  G     +   
Sbjct: 268 MYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAF- 326

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK----QMPMEPNERIWG 472
           +  +   +     LVD+  + G + EA  L      +  +  N  IWG
Sbjct: 327 KLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWG 374



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 92/186 (49%), Gaps = 6/186 (3%)

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVE-RKKLQPNLRLENALVDMYAKCGSLTEA 353
           I   AI +  +L ACG    + +GRK+H  V    KL+ ++ L   ++ MY+ CGS +++
Sbjct: 90  ISKEAIGI--LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDS 147

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML-MSGLCPDSIAFVSVLSACSH 412
           R VFD  + +D+  + +++S Y  +    DA++LF ++L  + L PD+     V  AC+ 
Sbjct: 148 RGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAG 207

Query: 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG 472
              +E G     +  +           A L+ + G+ G VE A  + + M    N   W 
Sbjct: 208 VADVELGEAVHALALKAGGFSDAFVGNA-LIAMYGKCGFVESAVKVFETM-RNRNLVSWN 265

Query: 473 SLVAAC 478
           S++ AC
Sbjct: 266 SVMYAC 271


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 173/535 (32%), Positives = 279/535 (52%), Gaps = 45/535 (8%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           +HA +I     H    +   L+  Y  CG MV+ R VFD +  +NVV +  L+  YV N 
Sbjct: 2   VHAHVI-KTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNS 60

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
               A+ V+ +M   G  P  +T    L ACS   S+ +G Q H  ++K  + ++   GN
Sbjct: 61  QPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGN 120

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            L ++Y K G L  + +   +   KDV++W ++++    NGR    L +  EM    ++P
Sbjct: 121 ALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEP 180

Query: 230 DADTMASLLPSVTNTSPEN---------------------------------VLSVKEMF 256
           +  T+ S+L   +     +                                 +   K +F
Sbjct: 181 NDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLF 240

Query: 257 LKLDNKNLVSWNVMIAVYAN-----------NSMPAEAVDLYLQMEVHGIEPNAISVASV 305
            +++ KNL++WN MIA +A                 EA+ +YL++   G +P+  +++S+
Sbjct: 241 NRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSI 300

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L  C  L+AL  G +IH    +     ++ +  ALVDMY KCGS+  AR  F  M  + +
Sbjct: 301 LTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTL 360

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           +SWTSMI+++   GQ   A+ LF  M ++G  P+ I FV VL+ACSHAG+++E   YF+I
Sbjct: 361 ISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEYFEI 420

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M ++YK+ P ++H+ CLVD+  R G+++EA+D+IK+M +EPNE IW  L+A C  + N +
Sbjct: 421 MQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGNEE 480

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           +G  AA+ +  L P  +  YV+L N+Y  A RW DV  VR+ M  + + K+   S
Sbjct: 481 LGFYAAEQLLKLKPRSTETYVVLLNMYISAERWEDVSMVRRLMKEEKVGKLKDWS 535



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 188/429 (43%), Gaps = 50/429 (11%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+ HA  II   +  + SIG  L   Y   G +  +   F E   K+V+ +  +I +  +
Sbjct: 101 KQFHA-FIIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGD 159

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N      L ++  M     +P+ +T   VL  CS   S  +G+Q+H    K+G + NL  
Sbjct: 160 NGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRI 219

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ-----NGRFD------EAL 216
            N LV +Y KCGC+ EA+ + N M  K+++TWN+M+AG+AQ        F       EAL
Sbjct: 220 TNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEAL 279

Query: 217 DVCREMESLRIKPDADTMASLLPSVT-------------NTSPENVLS------------ 251
            +  ++     KPD  T++S+L   +              T     LS            
Sbjct: 280 GMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMY 339

Query: 252 --------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
                    ++ FL +  + L+SW  MI  +A +     A+ L+  M + G  PN I+  
Sbjct: 340 DKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFV 399

Query: 304 SVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            VL AC     +    +    ++++ K++P +     LVDM+ + G L EA  V  +M  
Sbjct: 400 GVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDV 459

Query: 363 Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGR 420
           + +   W  +I+  G    G + +  ++   +  L P S   +V +L+    A   E+  
Sbjct: 460 EPNEFIWLLLIA--GCRNHGNEELGFYAAEQLLKLKPRSTETYVVLLNMYISAERWEDVS 517

Query: 421 YYFKIMTEQ 429
              ++M E+
Sbjct: 518 MVRRLMKEE 526


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 162/432 (37%), Positives = 261/432 (60%), Gaps = 10/432 (2%)

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           P  +T+  ++KACS  + L  G  +H  + K G D ++F    LV  YG  G + EARRV
Sbjct: 8   PTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRV 67

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP- 246
            ++M  +DV  W +M++ +A+ G    A  +  EM      P  +T AS    +   S  
Sbjct: 68  FDEMSERDVFAWTTMISVHARTGDMSSARQLFDEM------PVRNT-ASWNAMIDGYSRL 120

Query: 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
            NV S + +F ++ N++++SW  MIA Y+ N    EA+ ++ +M+ +GI+P+ +++A+++
Sbjct: 121 RNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATII 180

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
            AC  L AL LG++IH Y        ++ + +AL+DMYAKCGSL ++  VF ++R +++ 
Sbjct: 181 SACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLF 240

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
            W S+I    + G   +A+A+FS+M    + P+ + F+SVL AC+HAGL+EEGR  F  M
Sbjct: 241 CWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSM 300

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
           +  + + P IEH+ C+VDLLG+AG +E+A +L++ M MEPN  IWG+L+  C L+ N+ I
Sbjct: 301 SRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKI 360

Query: 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKM-PGAS-VEMN 544
             +A +    L PN SGYY LL N+YA+  RW +V  +R  M   G++K  PG+S +EM+
Sbjct: 361 AQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEMD 420

Query: 545 DQVQIIALPLRS 556
            ++   A   +S
Sbjct: 421 RKIHQFAASDKS 432



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 162/345 (46%), Gaps = 46/345 (13%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +F ++ N++++ +  +I  Y  N  + +AL V+  M  +G DPD  T   ++ AC+   +
Sbjct: 129 LFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGA 188

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           L +G +IH   +++G D +++ G+ L+ MY KCG L ++  V   +  K++  WNS++ G
Sbjct: 189 LDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEG 248

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK--- 262
            A +G  +EAL +   M+  +IKP+  T  S+L + T+     V   ++ FL +      
Sbjct: 249 LAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGL--VEEGRKRFLSMSRDFSI 306

Query: 263 --NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
              +  +  M+ +     +  +A++L   M    +EPN++   ++L  C          K
Sbjct: 307 PPEIEHYGCMVDLLGKAGLLEDALELVRSMR---MEPNSVIWGALLGGC----------K 353

Query: 321 IHRYV--------ERKKLQPNLR-LENALVDMYAKCGSLTEARTVFDQMRCQDV------ 365
           +HR +        E K L+PN       LV+MYA+    +E   +   M+   V      
Sbjct: 354 LHRNLKIAQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPG 413

Query: 366 VSWTSM---ISAYGMSGQGYDA--------VALFSKMLMSGLCPD 399
            SW  M   I  +  S + + A        V L  ++ +SG  P+
Sbjct: 414 SSWIEMDRKIHQFAASDKSHLASDEIYTLLVELDGQLKLSGYVPE 458



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 162/394 (41%), Gaps = 80/394 (20%)

Query: 17  VQALVLSTQYTLLS-GDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG 75
           VQA V  T +T  S   AC+ +     ++   + +H  I       S+  +   L+  YG
Sbjct: 2   VQAQVSPTSFTFSSLVKACSLV----SELGFGEAVHGHIW-KYGFDSHVFVQTALVDFYG 56

Query: 76  ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC 135
             G++V+ R VFDE++ ++V  +  +I  +        A  ++  M V            
Sbjct: 57  NAGKIVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVR----------- 105

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
                                       N  + N ++  Y +   ++ A  + + MP++D
Sbjct: 106 ----------------------------NTASWNAMIDGYSRLRNVESAELLFSQMPNRD 137

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS-----VTNTSPENVL 250
           +++W +M+A Y+QN +F EAL V  EM++  I PD  TMA+++ +       +   E  L
Sbjct: 138 IISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHL 197

Query: 251 SVKEM----------------------------FLKLDNKNLVSWNVMIAVYANNSMPAE 282
              EM                            F KL  KNL  WN +I   A +    E
Sbjct: 198 YAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEE 257

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALV 341
           A+ ++ +M+   I+PN ++  SVL AC     +  GRK    + R   + P +     +V
Sbjct: 258 ALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMV 317

Query: 342 DMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
           D+  K G L +A  +   MR + + V W +++  
Sbjct: 318 DLLGKAGLLEDALELVRSMRMEPNSVIWGALLGG 351



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 110/231 (47%), Gaps = 23/231 (9%)

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
           + P + + +S++ AC  +S L  G  +H ++ +     ++ ++ ALVD Y   G + EAR
Sbjct: 6   VSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEAR 65

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            VFD+M  +DV +WT+MIS +  +G    A  LF +M +     ++ ++ +++   S   
Sbjct: 66  RVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVR----NTASWNAMIDGYSRLR 121

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP---MEPNERIW 471
            +E     F  M  +      I  +  ++    +  +  EA  +  +M    ++P+E   
Sbjct: 122 NVESAELLFSQMPNR-----DIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTM 176

Query: 472 GSLVAACCLYSNMDIGILAADHIFHLAPNQSGY----YV--LLSNIYAKAG 516
            ++++AC     +D+G        HL   + G+    Y+   L ++YAK G
Sbjct: 177 ATIISACAHLGALDLG-----KEIHLYAMEMGFDLDVYIGSALIDMYAKCG 222


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 178/496 (35%), Positives = 269/496 (54%), Gaps = 35/496 (7%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           SN  +   L+  Y  CG++   R VF+ +  ++VV +N +I  +  N    +AL V+ +M
Sbjct: 217 SNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSM 276

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
                +PD  T    L +C     L +G+++H  V K  L   +   N LV MY +CG +
Sbjct: 277 MDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGM 336

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
            EA  V  +   KDV+TW SM+ GY  NG    AL +C  M+   + P+A T+ASLL + 
Sbjct: 337 DEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSAC 396

Query: 242 TNTS-----------------PENVLSVK----------------EMFLKLDNKNLVSWN 268
            +                     +VL V                 ++F K   K  V WN
Sbjct: 397 ASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWN 456

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
            +++   +N +  EAV L+  M +  +E N  +  SV+PA   L+ L     +H Y+ R 
Sbjct: 457 ALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRS 516

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQM--RCQDVVSWTSMISAYGMSGQGYDAVA 386
                + +   L+DMY+KCGSL  A  +FD++  + +D++ W+ +I+ YGM G G  AV 
Sbjct: 517 GFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVL 576

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           LF++M+ SG+ P+ I F SVL ACSH GL+++G   FK M E Y   P   H+ C+VDLL
Sbjct: 577 LFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLL 636

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
           GRAG+++EAYDLIK MP + N  IWG+L+ AC ++ N+++G +AA+ +F L P  +G Y+
Sbjct: 637 GRAGRLDEAYDLIKSMPFQQNHSIWGALLGACLIHQNVELGEVAAERLFELEPESTGNYI 696

Query: 507 LLSNIYAKAGRWGDVK 522
           LL+NIYA  GRW D +
Sbjct: 697 LLANIYAAVGRWKDAE 712



 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 152/517 (29%), Positives = 262/517 (50%), Gaps = 43/517 (8%)

Query: 34  CNDILDKYPDIKTLKK---LHAQIIINQHLHSNPSIGL--KLMRTYGACGQMVDTRHVFD 88
           C+ +L  Y   ++L K   LH   I +  LHS   I L   L  +Y  CG +   R +FD
Sbjct: 82  CDSLLCHYAATRSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFD 141

Query: 89  EITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDPDCYTYPCVLKACSGSNSLL 147
           ++++ ++  +N +I+ YV+   ++DAL V+ +M   G   PD YT+P V+KACS  + L 
Sbjct: 142 DLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACSVMSMLN 201

Query: 148 VGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA 207
           VG+ IH   +  G   N+F  N L+AMY  CG +  AR+V N M  + VV+WN+M++G+ 
Sbjct: 202 VGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWF 261

Query: 208 QNGRFDEALDVCREMESLRIKPDADTMASLLPS----------------VTNTSPENVLS 251
           QNGR +EAL V   M   R++PD+ T+ S LPS                V     +  + 
Sbjct: 262 QNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIE 321

Query: 252 VKE-----------------MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
           V+                  +F +   K++++W  MI  Y  N     A+ L   M++ G
Sbjct: 322 VRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDG 381

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
           + PNA+++AS+L AC  L  L  G+ +H +V RKKL  ++ +  AL+DMYAKC +++ + 
Sbjct: 382 VVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSF 441

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            VF +   +  V W +++S    +    +AV LF  ML+  +  +   F SV+ A +   
Sbjct: 442 QVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILA 501

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP-MEPNERIWGS 473
            L++       +      + +I     L+D+  + G ++ A+ +  ++P  E +  +W  
Sbjct: 502 DLKQVMNLHSYLVRS-GFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSV 560

Query: 474 LVAACCLYSNMDIGILAADHIFH--LAPNQSGYYVLL 508
           L+A   ++ + +  +L  + + H  + PN+  +  +L
Sbjct: 561 LIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVL 597


>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 180/531 (33%), Positives = 293/531 (55%), Gaps = 55/531 (10%)

Query: 27  TLLSGDACNDI---LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT 83
           TL S D  + I   L       TL+++HA+II  + LH +  I  + +    +      T
Sbjct: 66  TLRSFDTTSSISTLLKACTTTSTLEQVHARII-RKGLHQDHFIISQFLTLCNSLSNFSYT 124

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
             VF+ +++ + V +N  I+ Y  NY     + ++  M      PD +TYP ++KACS  
Sbjct: 125 TSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKV 184

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
             +  G+  H S V+ G+  ++F    L+ +YGKCG +  AR+V ++M  ++VV+W +M+
Sbjct: 185 CGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMI 244

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKN 263
           AGYA                                     S  +++  +++F ++  KN
Sbjct: 245 AGYA-------------------------------------SFSDLVEARKLFDEMPEKN 267

Query: 264 LVSWNVMIAVYAN-----------NSMPAEAVDL--YLQMEVHGIEPNAISVASVLPACG 310
            VSWN +I+ Y             + MP    D+  +  +    ++P+   + S++ AC 
Sbjct: 268 AVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALISGNVKPDEFIMVSLMSACS 327

Query: 311 DLSALLLGRKIHRYVERKKLQPN-LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
            + +L L + +  YV +  +  +   +  AL+DM AKCGS+  A  +F++M  +D++S+ 
Sbjct: 328 QMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYC 387

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           SM+    + G G  AV+LFS+ML  GL PD +AF  +L+ACS AGL++EG YYF+ M   
Sbjct: 388 SMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTD 447

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y +VP  +H+AC+VDLLGRAG+++EAY+L+K MP+EP+   WG+L+ AC L+ ++++G +
Sbjct: 448 YSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEV 507

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            AD +F L P  +G YVLLSNIYA A +W DV  +R  M  +GI+K+PG S
Sbjct: 508 VADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCS 558


>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
          Length = 537

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 165/508 (32%), Positives = 284/508 (55%), Gaps = 16/508 (3%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSI-GLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++ +K++HA +++   L  + ++  L      G  G     R VFD I + +   +N LI
Sbjct: 21  LRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPDRFMYNTLI 80

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFD-------PDCYTYPCVLKACSGSNSLLVGLQIHCS 155
           R   ++    DA+ +Y  M+ H  D       PD  T+P VL+AC+   +   G Q+H  
Sbjct: 81  RGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVHAH 140

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           VVK G + + F  N L+ M+   G L  A  + +    +D V W++M++G+A+ G    A
Sbjct: 141 VVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAA 200

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
            ++  E   ++     + M +    + + +P      +E+F    ++++VSWN MI+ Y 
Sbjct: 201 RELFDE-SPVKDLVSWNVMITAYAKLGDMAP-----ARELFDGAPDRDVVSWNAMISGYV 254

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK--KLQPN 333
                 +A++L+ QM+  G +P+ +++ S+L AC D   L  GR++H ++  +  ++ P 
Sbjct: 255 RCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPT 314

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             L NAL+DMYAKCGS+T A  VF  M+ ++V +W S+I    + G   +++A+F KML 
Sbjct: 315 TALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQ 374

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
             + PD I FV+VL+ACSH G++++G  YF +M ++Y++ P I+H+ C+VD+L R G ++
Sbjct: 375 GNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLK 434

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA++ I  M +EPN  IW +L+ AC ++  +++   A   +     + SG +VLLSNIYA
Sbjct: 435 EAFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSDASGDFVLLSNIYA 494

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGASV 541
             G W   + +RK M+  G+ K  G +V
Sbjct: 495 SVGEWPGSENMRKLMDDSGVNKEAGRAV 522


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 182/555 (32%), Positives = 293/555 (52%), Gaps = 41/555 (7%)

Query: 33  ACNDILDKYPDIKTLK---KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDE 89
           ACN  L    D+  L+   ++H+ + +      +  IG  L+  Y  CG +   + VFD 
Sbjct: 43  ACNAALVACADLGALRAGEQVHS-LAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDR 101

Query: 90  ITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG 149
           + + +VV +  LI ++  N  +  A      M   G  P+ +T   +L AC      ++G
Sbjct: 102 MDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC----PRVLG 157

Query: 150 LQIHCSVV-KVGL-DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA 207
            QIH  ++ K+GL   ++++   L+  Y + G  K A+ V + +  K+VV+W SM+  Y 
Sbjct: 158 QQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYI 217

Query: 208 QNGRFDEALDVCREMESLRIKPDADTMASLLPS-------------------VTNTSPEN 248
           ++GR +EAL V  +M S  + P+   ++ +L +                   +T+    N
Sbjct: 218 RDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSN 277

Query: 249 VL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297
            L            ++ M  K++N +LVSW   I+    N    +A+ L  QM   G  P
Sbjct: 278 ALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTP 337

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           N  + +SVL +C D+++L  G + H    +      +   NAL++MY+KCG +  AR  F
Sbjct: 338 NGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAF 397

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           D M   DV SW S+I  +   G    A+ +FSKM  +G+ PD   F+ VL  C+H+G++E
Sbjct: 398 DVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVE 457

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           EG  +F++M +QY   P   H+AC++D+LGR G+ +EA  +I  MP EP+  IW +L+A+
Sbjct: 458 EGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLAS 517

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
           C L+ N+DIG LAAD +  L+   S  YVL+SNIYA  G W D ++VR+ M+  G+KK  
Sbjct: 518 CKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDA 577

Query: 538 GAS-VEMNDQVQIIA 551
           G S +E+N++V   A
Sbjct: 578 GCSWIEINNEVHTFA 592



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 180/361 (49%), Gaps = 34/361 (9%)

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           KNVV +  ++  Y  N     AL ++ +M   G  P+ +     L AC+   +L  G Q+
Sbjct: 4   KNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQV 63

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H   V+ G   + + G+ L+ MY +CG L  A+ V + M S DVV + S+++ + +NG F
Sbjct: 64  HSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEF 123

Query: 213 DEALDVCREMESLRIKPDADTMASLL---PSVTNTS------------PENVLS------ 251
           + A +   +M    +KP+  TM ++L   P V                 ++V S      
Sbjct: 124 ELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALID 183

Query: 252 ----------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAIS 301
                      K +F  L  KN+VSW  M+ +Y  +    EA+ ++  M   G++PN  +
Sbjct: 184 FYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFA 243

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           ++ VL ACG +    LGR++H    +  L  ++R+ NAL+ MY + G + E   + +++ 
Sbjct: 244 LSIVLGACGSIG---LGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIE 300

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
             D+VSWT+ ISA   +G G  A+AL  +M   G  P+  AF SVLS+C+    L++G  
Sbjct: 301 NPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQ 360

Query: 422 Y 422
           +
Sbjct: 361 F 361



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 116/248 (46%), Gaps = 31/248 (12%)

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           KN+V+W  +++ Y  N  P  A+ ++  M   G+ PN  +  + L AC DL AL  G ++
Sbjct: 4   KNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQV 63

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
           H    R     +  + + L++MY++CGSL  A+ VFD+M   DVV +TS+ISA+  +G+ 
Sbjct: 64  HSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEF 123

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHA-------------GLLEEGRYY------ 422
             A     +ML  GL P+     ++L+AC                GL  +  Y       
Sbjct: 124 ELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALID 183

Query: 423 FKIMTEQYKLVPRI-EHFAC--------LVDLLGRAGKVEEAYDLIKQMPME---PNERI 470
           F     ++KL   + +   C        ++ L  R G++EEA  +   M  E   PNE  
Sbjct: 184 FYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFA 243

Query: 471 WGSLVAAC 478
              ++ AC
Sbjct: 244 LSIVLGAC 251


>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
          Length = 551

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 166/506 (32%), Positives = 282/506 (55%), Gaps = 46/506 (9%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
            + L ++H  ++    +  +  +  +++    A  ++     VF ++ + N+   N +I+
Sbjct: 27  FRDLLRVHGHVV-RLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIK 85

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDP-------DCYTYPCVLKACSGSNSLLVGLQIHCSV 156
           +Y  N+ + DA+ VY  M      P       D +TYP +LKAC G+ +L +G Q+H  V
Sbjct: 86  AYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHV 145

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           V+ G D +    N L+ MY + G L  A +V ++M  +DVV+WN +++ +A+ G+  +A 
Sbjct: 146 VRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKA- 204

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                                 +F  + +K +V+W  M++ Y  
Sbjct: 205 ------------------------------------TALFNSMPDKTIVTWTAMVSGYTT 228

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
                 AVD +  M+  G EP+ +S+ +VLPAC  L AL LGR I+ Y +R  +  +  +
Sbjct: 229 VGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHI 288

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG- 395
            NAL++MYAKCG + +A  +FD M  +DV+SW+++I      G+ ++AV LF++M   G 
Sbjct: 289 CNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGK 348

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + P+ I FV +LSACS+AGL++EG  +F  M + Y + P +EH+ C+VDLLGR+G++  A
Sbjct: 349 VRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRA 408

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
            DL++ MP+  + ++WGSL++AC  + ++D  +LAA+ +  L P+  G  V+L+N+YA A
Sbjct: 409 LDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAA 468

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGASV 541
            RW DV   RK + S+ ++K PG S+
Sbjct: 469 RRWSDVASTRKAIRSRSMRKTPGCSL 494


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 175/521 (33%), Positives = 277/521 (53%), Gaps = 34/521 (6%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  LM  Y   G   + R VFD +  +N V +  +I  Y +  L  +AL +++ M    
Sbjct: 145 VGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREE 204

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
              + + +  VL A +    +  G QIHC  VK GL   +  GN LV MY KCG L +A 
Sbjct: 205 EGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDAL 264

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           +       K+ +TW++M+ GYAQ+G  D+AL +   M    I+P   T   ++ + ++  
Sbjct: 265 QTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLG 324

Query: 246 P---------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIA 272
                                              +++  ++ F  L   ++V W  MI 
Sbjct: 325 AAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIG 384

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y  N    +A+ LY +ME+ GI PN +++ASVL AC  L+AL  G++IH    +     
Sbjct: 385 GYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGL 444

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
            + + +AL  MYAKCG L +   VF +M  +DV+SW +MIS    +G G +A+ LF +M 
Sbjct: 445 EVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQ 504

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
           + G  PD + FV++LSACSH GL+E G  YF++M +++ + PR+EH+AC+VD+L RAGK+
Sbjct: 505 LEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKL 564

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
           +EA +  +   ++    +W  ++ AC  Y N ++G  A + +  L   +S  YVLLS+IY
Sbjct: 565 KEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIY 624

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
           +  GRW DV+RVR+ M  +G+ K PG S +E+   V +  +
Sbjct: 625 SALGRWEDVERVRRMMKLRGVSKEPGCSWIELKSGVHVFVV 665



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 135/475 (28%), Positives = 229/475 (48%), Gaps = 41/475 (8%)

Query: 27  TLLSGDACNDILDKYPDIKTLKK---LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT 83
           TL S  +    L +Y   ++L+K   LHAQII +    S   I   L+  Y  C ++ + 
Sbjct: 2   TLPSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSS--SCVYIANSLVNLYAKCQRLREA 59

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDA--LHVYKNMSVHGFDPDCYTYPCVLKACS 141
           + VF+ I NK+VV +N +I  Y  +     +  + +++ M      P+ +T+  V  A S
Sbjct: 60  KFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAAS 119

Query: 142 GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNS 201
                  G   H   +K+    ++F G+ L+ MY K G   EAR+V + MP ++ V+W +
Sbjct: 120 TLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWAT 179

Query: 202 MVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT------NTSPENVLSVKEM 255
           M++GYA      EAL + R M       +     S+L ++T      N    + ++VK  
Sbjct: 180 MISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNG 239

Query: 256 FLKL---------------------------DNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
            L +                            +KN ++W+ MI  YA +    +A+ L+ 
Sbjct: 240 LLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFS 299

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
            M + GI P+  +   V+ AC DL A   G+++H Y+ +   +  + +  ALVDMYAKC 
Sbjct: 300 SMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCS 359

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
           S+ +AR  FD ++  D+V WTSMI  Y  +G+  DA++L+ +M M G+ P+ +   SVL 
Sbjct: 360 SIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLK 419

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           ACS    LE+G+      T +Y     +   + L  +  + G +++   + ++MP
Sbjct: 420 ACSSLAALEQGK-QIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMP 473



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 166/340 (48%), Gaps = 35/340 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H  I +   L S  S+G  L+  Y  CG + D    F+  ++KN + ++ +I  Y  
Sbjct: 229 KQIHC-IAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQ 287

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +     AL ++ +M + G  P  +T+  V+ ACS   +   G Q+H  ++K+G +  ++ 
Sbjct: 288 SGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYV 347

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              LV MY KC  + +AR+  + +   D+V W SM+ GY QNG  ++AL +   ME   I
Sbjct: 348 MTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGI 407

Query: 228 KPDADTMASLLPSVTNTSPE------NVLSVKE--------------------------- 254
            P+  TMAS+L + ++ +        +  +VK                            
Sbjct: 408 LPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTL 467

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F ++  ++++SWN MI+  + N    EA++L+ +M++ G +P+ ++  ++L AC  +  
Sbjct: 468 VFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGL 527

Query: 315 LLLGRKIHRYV-ERKKLQPNLRLENALVDMYAKCGSLTEA 353
           +  G    R + +   + P +     +VD+ ++ G L EA
Sbjct: 528 VERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEA 567



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 120/259 (46%), Gaps = 6/259 (2%)

Query: 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANN--SMPAEAVDLYLQMEVHGIEPNAISVAS 304
           + +   K +F ++ NK++VSWN +I  Y+ +  S  +  ++L+ +M      PNA + A 
Sbjct: 54  QRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAG 113

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           V  A   L     GR  H    +     ++ + ++L++MY K G   EAR VFD M  ++
Sbjct: 114 VFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERN 173

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
            VSW +MIS Y       +A+ LF  M       +   F SVLSA +   L+  G+    
Sbjct: 174 SVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHC 233

Query: 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNM 484
           I  +   L+  +     LV +  + G +++A     +   + N   W +++       + 
Sbjct: 234 IAVKN-GLLSIVSVGNALVTMYAKCGSLDDALQTF-ETSSDKNSITWSAMITGYAQSGDS 291

Query: 485 D--IGILAADHIFHLAPNQ 501
           D  + + ++ H+  + P++
Sbjct: 292 DKALKLFSSMHLSGIRPSE 310


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 165/505 (32%), Positives = 271/505 (53%), Gaps = 40/505 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LHA++I       +P +   L+  Y  CG   + + VF+ + ++N V + VLI   + 
Sbjct: 280 KQLHAKVI-RSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQ 338

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
              +  ++ ++  M       D +    ++  C     L +G Q+H   +K G +  +  
Sbjct: 339 YECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVV 398

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+++Y KCG L+ A  V + M  +D+V+W SM+  Y+Q G                 
Sbjct: 399 SNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIG----------------- 441

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
                               N++  +E F  +  +N ++WN M+  Y  +    + + +Y
Sbjct: 442 --------------------NIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMY 481

Query: 288 LQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
             M     + P+ ++  ++   C D+ A  LG +I  +  +  L  N+ + NA + MY+K
Sbjct: 482 SAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSK 541

Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
           CG ++EA+ +FD +  +DVVSW +MI+ Y   G G  A   F  ML  G  PD I++V+V
Sbjct: 542 CGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAV 601

Query: 407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP 466
           LS CSH+GL++EG+ YF +MT  + + P +EHF+C+VDLLGRAG + EA DLI +MPM+P
Sbjct: 602 LSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKP 661

Query: 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526
              +WG+L++AC ++ N ++  LAA H+F L    SG Y+LL+ IY+ AG+  D  +VRK
Sbjct: 662 TAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRK 721

Query: 527 FMNSKGIKKMPGAS-VEMNDQVQII 550
            M  KGIKK PG S +E+ ++V + 
Sbjct: 722 LMRDKGIKKNPGYSWMEVENKVHVF 746



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 173/400 (43%), Gaps = 85/400 (21%)

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN-DMPSKD 195
           L++C    +L     +H  +V VGL   +F  N L+  Y  CG L +ARR+L  D+   +
Sbjct: 27  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 86

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM 255
           V+T N M+ GYA+ G   +A                                     +E+
Sbjct: 87  VITHNIMMNGYAKQGSLSDA-------------------------------------EEL 109

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPA----------------EAVDLYLQMEVHGIEPNA 299
           F ++  +++ SWN ++   ++ S PA                + + L+ + +  G     
Sbjct: 110 FDRMPRRDVASWNTLM---SDTSRPAGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVE 166

Query: 300 ISVASVLPACG--DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
            ++  +   CG  D ++ L  +     +ER    P +   N+++  YAK   +  A   F
Sbjct: 167 TALVDMFVRCGYVDFASRLFSQ-----IER----PTIFCRNSMLAGYAKLYGIDHAIEYF 217

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           + M  +DVVSW  MI+A   SG+  +A+ L  +M   G+  DS  + S L+AC+    L 
Sbjct: 218 EDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLG 277

Query: 418 EGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIW---- 471
            G+   ++  +  + +P+I+ +  + L++L  + G  +EA  +   +  + N   W    
Sbjct: 278 WGK---QLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSL-QDRNSVSWTVLI 333

Query: 472 -GSLVAACC-----LYSNMDIGILAADHIFHLAPNQSGYY 505
            GSL   C      L++ M   ++A D  F LA   SG +
Sbjct: 334 GGSLQYECFSKSVELFNQMRAELMAIDQ-FALATLISGCF 372



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 12/176 (6%)

Query: 297 PNAIS--VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
           P+A++  +A  L +CG   AL   R +H  +    L   + L+N L+  Y  CG+L++AR
Sbjct: 16  PHAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDAR 75

Query: 355 TVFD-QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM------LMSGLCPDSIAFVSVL 407
            +    ++  +V++   M++ Y   G   DA  LF +M        + L  D+       
Sbjct: 76  RLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSW 135

Query: 408 SACSHAGLLEEGRYYFKIMTE-QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
            +C   G  E       +  +  +   P +E    LVD+  R G V+ A  L  Q+
Sbjct: 136 MSCGALGCRELAPQLLGLFWKFDFWGDPDVE--TALVDMFVRCGYVDFASRLFSQI 189


>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
 gi|219886289|gb|ACL53519.1| unknown [Zea mays]
          Length = 537

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 165/508 (32%), Positives = 284/508 (55%), Gaps = 16/508 (3%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSI-GLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++ +K++HA +++   L  + ++  L      G  G     R VFD I + +   +N LI
Sbjct: 21  LRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPDRFMYNTLI 80

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFD-------PDCYTYPCVLKACSGSNSLLVGLQIHCS 155
           R   ++    DA+ +Y  M+ H  D       PD  T+P VL+AC+   +   G Q+H  
Sbjct: 81  RGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVHAH 140

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           VVK G + + F  N L+ M+   G L  A  + +    +D V W++M++G+A+ G    A
Sbjct: 141 VVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAA 200

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
            ++  E   ++     + M +    + + +P      +E+F    ++++VSWN MI+ Y 
Sbjct: 201 RELFDE-SPVKDLVSWNVMITAYAKLGDMAP-----ARELFDGAPDRDVVSWNAMISGYV 254

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK--KLQPN 333
                 +A++L+ QM+  G +P+ +++ S+L AC D   L  GR++H ++  +  ++ P 
Sbjct: 255 RCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPT 314

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             L NAL+DMYAKCGS+T A  VF  M+ ++V +W S+I    + G   +++A+F KML 
Sbjct: 315 TALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQ 374

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
             + PD I FV+VL+ACSH G++++G  YF +M ++Y++ P I+H+ C+VD+L R G ++
Sbjct: 375 GNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLK 434

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA++ I  M +EPN  IW +L+ AC ++  +++   A   +     + SG +VLLSNIYA
Sbjct: 435 EAFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSDASGDFVLLSNIYA 494

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGASV 541
             G W   + +RK M+  G+ K  G +V
Sbjct: 495 SVGEWPGSENMRKLMDDSGVNKEAGRAV 522


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 165/505 (32%), Positives = 271/505 (53%), Gaps = 40/505 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LHA++I       +P +   L+  Y  CG   + + VF+ + ++N V + VLI   + 
Sbjct: 290 KQLHAKVI-RSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQ 348

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
              +  ++ ++  M       D +    ++  C     L +G Q+H   +K G +  +  
Sbjct: 349 YECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVV 408

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+++Y KCG L+ A  V + M  +D+V+W SM+  Y+Q G                 
Sbjct: 409 SNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIG----------------- 451

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
                               N++  +E F  +  +N ++WN M+  Y  +    + + +Y
Sbjct: 452 --------------------NIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMY 491

Query: 288 LQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
             M     + P+ ++  ++   C D+ A  LG +I  +  +  L  N+ + NA + MY+K
Sbjct: 492 SAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSK 551

Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
           CG ++EA+ +FD +  +DVVSW +MI+ Y   G G  A   F  ML  G  PD I++V+V
Sbjct: 552 CGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAV 611

Query: 407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP 466
           LS CSH+GL++EG+ YF +MT  + + P +EHF+C+VDLLGRAG + EA DLI +MPM+P
Sbjct: 612 LSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKP 671

Query: 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526
              +WG+L++AC ++ N ++  LAA H+F L    SG Y+LL+ IY+ AG+  D  +VRK
Sbjct: 672 TAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRK 731

Query: 527 FMNSKGIKKMPGAS-VEMNDQVQII 550
            M  KGIKK PG S +E+ ++V + 
Sbjct: 732 LMRDKGIKKNPGYSWMEVENKVHVF 756



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 160/348 (45%), Gaps = 50/348 (14%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD-P 128
           +M  Y   G + D   +FD +  ++V  +N L+  Y     + D L  + +M   G   P
Sbjct: 77  MMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLP 136

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL-FNGN-----GLVAMYGKCGCLK 182
           + +T+ CV+K+C       +  Q+      +GL +   F G+      LV M+ +CG + 
Sbjct: 137 NAFTFCCVMKSCGALGCRELAPQL------LGLFWKFDFWGDPDVETALVDMFVRCGYVD 190

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
            A R+ + +    +   NSM+AGYA+    D A+                          
Sbjct: 191 FASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAI-------------------------- 224

Query: 243 NTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
                      E F  +  +++VSWN+MIA  + +    EA+ L ++M   G+  ++ + 
Sbjct: 225 -----------EYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTY 273

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            S L AC  L +L  G+++H  V R   Q +  + +AL+++YAKCGS  EA+ VF+ ++ 
Sbjct: 274 TSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQD 333

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
           ++ VSWT +I           +V LF++M    +  D  A  +++S C
Sbjct: 334 RNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 381



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 175/414 (42%), Gaps = 87/414 (21%)

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN-DMPSKD 195
           L++C    +L     +H  +V VGL   +F  N L+  Y  CG L +ARR+L  D+   +
Sbjct: 11  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 70

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM 255
           V+T N M+ GYA+ G   +A                                     +E+
Sbjct: 71  VITHNIMMNGYAKQGSLSDA-------------------------------------EEL 93

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE-PNAISVASVLPACGDLSA 314
           F ++  +++ SWN +++ Y       + ++ ++ M   G   PNA +   V+ +CG L  
Sbjct: 94  FDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGC 153

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ--------------- 359
             L  ++     +     +  +E ALVDM+ +CG +  A  +F Q               
Sbjct: 154 RELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAG 213

Query: 360 ----------------MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
                           M  +DVVSW  MI+A   SG+  +A+ L  +M   G+  DS  +
Sbjct: 214 YAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTY 273

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQ 461
            S L+AC+    L  G+   ++  +  + +P+I+ +  + L++L  + G  +EA  +   
Sbjct: 274 TSSLTACARLFSLGWGK---QLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNS 330

Query: 462 MPMEPNERIW-----GSLVAACC-----LYSNMDIGILAADHIFHLAPNQSGYY 505
           +  + N   W     GSL   C      L++ M   ++A D  F LA   SG +
Sbjct: 331 LQ-DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQ-FALATLISGCF 382



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 36/196 (18%)

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR------ 354
           ++A  L +CG   AL   R +H  +    L   + L+N L+  Y  CG+L++AR      
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRAD 65

Query: 355 --------------------------TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
                                      +FD+M  +DV SW +++S Y  + +  D +  F
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETF 125

Query: 389 SKMLMSG-LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE-QYKLVPRIEHFACLVDLL 446
             M  SG   P++  F  V+ +C   G  E       +  +  +   P +E    LVD+ 
Sbjct: 126 VSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVE--TALVDMF 183

Query: 447 GRAGKVEEAYDLIKQM 462
            R G V+ A  L  Q+
Sbjct: 184 VRCGYVDFASRLFSQI 199


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 183/562 (32%), Positives = 302/562 (53%), Gaps = 66/562 (11%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACG-QMVDTRHVFDEITNKNVVFFNVLI 102
           ++ +K+LHA  I++   + + ++  K++R+Y      +V    VFD+I       +N+LI
Sbjct: 1   MEAIKRLHAYYIVSGLYNCHYAMS-KVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILI 59

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
           R    +    DA+  YK     G  PD  T+P +LKAC+  N+L  G Q+H  + K+GL 
Sbjct: 60  RGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLL 119

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++F  N L+ +Y  CG L  AR V ++M  KDVV+WNS++ GY+Q  RF + L + + M
Sbjct: 120 SDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLM 179

Query: 223 ESLRIKPDADTMASLLPSVT---------------------------NTSPE------NV 249
           ++  +K D  TM  ++ + T                           NT  +       +
Sbjct: 180 QNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQL 239

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYAN-----------NSMP------------------ 280
            S +++F  +  +N+V+ N MIA YA            + +P                  
Sbjct: 240 QSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQAN 299

Query: 281 --AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
             ++A++++ QM+   ++P+AI +ASV+ +C  L AL LG+ +H YV R  ++ +  +EN
Sbjct: 300 HFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMEN 359

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           +L+DMY KCGS  EA  VF +M+ +D +SW S+I     +G   +++ LF  ML  G  P
Sbjct: 360 SLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRP 419

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           + + F+ VL AC++A L+EEG  +F+ M   Y L P+++H+ C+VDLLGRAG++E+A   
Sbjct: 420 NGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRF 479

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
           I +MP++P+  +W  L+ +C  + ++ I  +    +  L P+ SG Y LLSN YA A RW
Sbjct: 480 ITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRW 539

Query: 519 GDVKRVRKFMNSKGIKKMPGAS 540
            +   VR+ M    ++K PG S
Sbjct: 540 SEAMNVRQCMADTDVRKSPGCS 561


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 195/541 (36%), Positives = 292/541 (53%), Gaps = 63/541 (11%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNK--NVVFFNVLIRSYVNNYLYYDALHVYKNMS-VHGF 126
           L+  YG CG       VFDE+     +VV +  LI +Y +N    +A   +  M  + G+
Sbjct: 93  LVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGW 152

Query: 127 DP------DCYTYPCVLKACS---GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK 177
           D       D  +   ++ AC+   GSN L  G  +H  VVK G   +   GN +V MY  
Sbjct: 153 DGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSA 212

Query: 178 CGCLKEARRVLNDMP--SKDVVTWNSMVAGYAQNGRFDEALDVCREMES---LRIKPDAD 232
           C  +  A RV N +P   +DVV+WNS+++G+  NG  + AL    +M S     ++P+  
Sbjct: 213 CKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRV 272

Query: 233 TMASLLPSVTN-----TSP--------------------------------ENVLSVKEM 255
           T+ +LL S        TS                                  N+   +E+
Sbjct: 273 TVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREI 332

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG------IEPNAISVASVLPAC 309
           F  ++ KN+V W+ MIA Y   S P EA+ L+ QM + G      ++PNA+++ SV+ AC
Sbjct: 333 FDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAAC 392

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM--RCQDVVS 367
             L A      IH+Y     L  + R+ +AL+DM AKCG +   R VF +M    + VVS
Sbjct: 393 SRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVS 452

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W+SMI A G+ G+G  A+ LFS+M   G  P+ I ++SVLSACSHAGL+E+G+  F  M 
Sbjct: 453 WSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSME 512

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
           + Y + P  +H+ACLVDLLGRAG ++EA+++I  MP++ +  +WGSL+AAC L+ N  +G
Sbjct: 513 KDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLG 572

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
            +    I  L  N  G++VLL+N+Y  AGRW DV R+R  +   G++K+PG S +E+ ++
Sbjct: 573 EIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNE 632

Query: 547 V 547
           V
Sbjct: 633 V 633



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 210/454 (46%), Gaps = 73/454 (16%)

Query: 90  ITNKNVVFFNVLI-RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLV 148
           I++K+   +N LI ++   N     AL  +  M  H    + +T+P +LKAC+    LL 
Sbjct: 13  ISHKDTFHWNSLIAKNATQNP--QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70

Query: 149 GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP--SKDVVTWNSMVAGY 206
            LQ+H  + ++GL  + F+   LV  YGKCG    A +V ++MP  S DVV+W ++++ Y
Sbjct: 71  TLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130

Query: 207 AQNGRFDEALDVCREMESLR-------IKPDADTMASLLPSVTNTSPENVL--------- 250
           + NG  DEA      M  +R          D  ++ +L+ +       N L         
Sbjct: 131 SSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGL 190

Query: 251 --------------SVKEMF---------------LKLDNKNLVSWNVMIAVYANNSMPA 281
                         S+  M+               + ++ +++VSWN +I+ +  N    
Sbjct: 191 VVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAE 250

Query: 282 EAVDLYLQMEVHG---IEPNAISVASVLPACGDLSALLLGRKIHRYVERKK----LQPNL 334
            A+  +  M   G   +EPN ++V ++L +C +L  +     +H Y+  +     +  ++
Sbjct: 251 RALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDV 310

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            +  AL+DM+A+CG+L  AR +FD +  ++VV W++MI+ Y       +A+ LF +MLM 
Sbjct: 311 VVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLME 370

Query: 395 G------LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA----CLVD 444
           G      + P+++  VSV++ACS  G           M  +Y +   ++  A     L+D
Sbjct: 371 GNMVGVEVKPNAVTLVSVIAACSRLGASRSAS-----MIHKYAVATGLDQDARIASALID 425

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERI-WGSLVAA 477
           +  + G +E    +  +M       + W S++ A
Sbjct: 426 MCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGA 459


>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
 gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
          Length = 551

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 166/506 (32%), Positives = 282/506 (55%), Gaps = 46/506 (9%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
            + L ++H  ++    +  +  +  +++    A  ++     VF ++ + N+   N +I+
Sbjct: 27  FRDLLRVHGHVV-RLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIK 85

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDP-------DCYTYPCVLKACSGSNSLLVGLQIHCSV 156
           +Y  N+ + DA+ VY  M      P       D +TYP +LKAC G+ +L +G Q+H  V
Sbjct: 86  AYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHV 145

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           V+ G D +    N L+ MY + G L  A +V ++M  +DVV+WN +++ +A+ G+  +A 
Sbjct: 146 VRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKA- 204

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                                 +F  + +K +V+W  M++ Y  
Sbjct: 205 ------------------------------------TALFNSMPDKTIVTWTAMVSGYTT 228

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
                 AVD +  M+  G EP+ +S+ +VLPAC  L AL LGR I+ Y +R  +  +  +
Sbjct: 229 VGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHI 288

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG- 395
            NAL++MYAKCG + +A  +FD M  +DV+SW+++I      G+ ++AV LF++M   G 
Sbjct: 289 CNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGK 348

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + P+ I FV +LSACS+AGL++EG  +F  M + Y + P +EH+ C+VDLLGR+G++  A
Sbjct: 349 VRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRA 408

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
            DL++ MP+  + ++WGSL++AC  + ++D  +LAA+ +  L P+  G  V+L+N+YA A
Sbjct: 409 LDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAA 468

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGASV 541
            RW DV   RK + S+ ++K PG S+
Sbjct: 469 RRWSDVASTRKAIRSRSMRKTPGCSL 494


>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09190-like [Cucumis sativus]
 gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09190-like [Cucumis sativus]
          Length = 484

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 169/505 (33%), Positives = 276/505 (54%), Gaps = 39/505 (7%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +L  +     L ++HA  +    LH +  I    +    +  ++     +F +  N N+ 
Sbjct: 15  LLHGHKSRTHLTQIHAHFL-RHGLHQSNQILAHFISVCASFNRIAYADRLFSQSHNPNIF 73

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            FN +I+++  +  ++ +L ++ +M  H   PD YT+  +LK+C+      +G  +   V
Sbjct: 74  LFNSIIKAHSLSVPFHQSLLLFSSMKNHRIVPDQYTFAPLLKSCANLCEYSLGQCVISEV 133

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
            + G         G+V +Y  C  +++A ++ ++M  +DVV WN M+ G+ + G  D  L
Sbjct: 134 FRRGFYCFGSIRIGVVELYVCCEKMEDAWKMFDEMSHRDVVVWNLMIRGFCKTGNVDFGL 193

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
            + R+M                                       ++LVSWN +I+  A 
Sbjct: 194 CLFRQM-------------------------------------SERSLVSWNTIISCLAQ 216

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLR 335
           N    EA++L+ QME HG +P+ ++V ++LP C  L AL +G++IH Y   K  L     
Sbjct: 217 NRRDVEALELFQQMEEHGFKPDEVTVVTMLPVCSRLGALEVGQRIHSYASSKGNLVGITT 276

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           + N+L+D Y KCG++ +A  +F +M C+ VVSW ++I  + ++G+G  A+ LF +M    
Sbjct: 277 VGNSLIDFYCKCGNIEKAYNIFQKMTCKSVVSWNTIILGFALNGKGEFAIDLFMEMRKEY 336

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           L P+   FV+VL+AC H+GLLE+GR  F  M E Y++ P++EHF C+VDLLGR G VEEA
Sbjct: 337 LKPNDATFVAVLTACVHSGLLEKGRELFSSMAEDYEIQPKLEHFGCMVDLLGRGGCVEEA 396

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
           + LIK MPM+PN  +WG+++ AC  + N+ +  +A   +  L P  SG YVLLSN+ A+ 
Sbjct: 397 HKLIKSMPMQPNATLWGAVLGACRTHGNLKLAEMAVKELISLEPWNSGNYVLLSNMLAEE 456

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS 540
           GRW +V+ VR++M  K +KK PG S
Sbjct: 457 GRWEEVENVRQWMREKSVKKAPGQS 481


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 156/402 (38%), Positives = 250/402 (62%), Gaps = 34/402 (8%)

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP- 239
           L   R+V   MP +D+V+WN++++G AQNG  ++AL + REM +  ++PD+ T++S+LP 
Sbjct: 146 LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPI 205

Query: 240 ----------------SVTNTSPENVL---SVKEMFLK-------------LDNKNLVSW 267
                           ++ N    +V    S+ +M+ K             L   + +SW
Sbjct: 206 FAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISW 265

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
           N +IA    N M  E +  + QM +  I+PN +S +S++PAC  L+ L LG+++H Y+ R
Sbjct: 266 NSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR 325

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
            +   N+ + +ALVDMYAKCG++  AR +FD+M   D+VSWT+MI  Y + G  YDA++L
Sbjct: 326 SRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISL 385

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           F +M + G+ P+ +AF++VL+ACSHAGL++E   YF  MT+ Y+++P +EH+A + DLLG
Sbjct: 386 FKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLG 445

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507
           R G++EEAY+ I  M +EP   +W +L+AAC ++ N+++    +  +F + P   G YVL
Sbjct: 446 RVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVL 505

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           LSNIY+ AGRW D +++R  M  KG+KK P  S +E+ ++V 
Sbjct: 506 LSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVH 547



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 159/326 (48%), Gaps = 35/326 (10%)

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
           R VF+ +  +++V +N +I     N ++ DAL + + M      PD +T   VL   +  
Sbjct: 150 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 209

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
            +LL G +IH   ++ G D ++F G+ L+ MY KC  + ++ RV   +P  D ++WNS++
Sbjct: 210 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 269

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP----------------- 246
           AG  QNG FDE L   ++M   +IKP+  + +S++P+  + +                  
Sbjct: 270 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 329

Query: 247 ----------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
                            N+ + + +F K++  ++VSW  MI  YA +    +A+ L+ +M
Sbjct: 330 GNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRM 389

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRK-IHRYVERKKLQPNLRLENALVDMYAKCGS 349
           EV G++PN ++  +VL AC     +    K  +   +  ++ P L    A+ D+  + G 
Sbjct: 390 EVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGR 449

Query: 350 LTEARTVFDQMRCQDVVS-WTSMISA 374
           L EA      M  +   S W+++++A
Sbjct: 450 LEEAYEFISDMHIEPTGSVWSTLLAA 475



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 195/405 (48%), Gaps = 29/405 (7%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M   G  PD   +P VLK+C+    L  G  +H  ++++G+ ++L+  N L+ MY K   
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60

Query: 181 LKEA-------RRVLNDMP----------SKDV-VTWNSMVAGYAQNGRFDEALDVCREM 222
           L+E         ++L  +P          S D+    +  VAG  QNG  ++  ++  ++
Sbjct: 61  LEEGGVQRFCDSKMLGGIPEPREIGKCSNSHDLPCELDERVAGIDQNGDLNQMSNILYQV 120

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
            + +   D +   S + S        + S++++F  +  +++VSWN +I+  A N M  +
Sbjct: 121 NTYKKVFD-EGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHED 179

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A+ +  +M    + P++ +++SVLP   +   LL G++IH Y  R     ++ + ++L+D
Sbjct: 180 ALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLID 239

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MYAKC  + ++  VF  +   D +SW S+I+    +G   + +  F +ML++ + P+ ++
Sbjct: 240 MYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVS 299

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE--------- 453
           F S++ AC+H   L  G+     +    +    +   + LVD+  + G +          
Sbjct: 300 FSSIMPACAHLTTLHLGKQLHGYIIRS-RFDGNVFIASALVDMYAKCGNIRTARWIFDKM 358

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
           E YD++    M     + G    A  L+  M++  +  +++  +A
Sbjct: 359 ELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMA 403



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 153/328 (46%), Gaps = 8/328 (2%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           I  +Y ++   K++H   I N +  ++  IG  L+  Y  C ++ D+  VF  +   + +
Sbjct: 205 IFAEYVNLLKGKEIHGYAIRNGY-DADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGI 263

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +N +I   V N ++ + L  ++ M +    P+  ++  ++ AC+   +L +G Q+H  +
Sbjct: 264 SWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYI 323

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           ++   D N+F  + LV MY KCG ++ AR + + M   D+V+W +M+ GYA +G   +A+
Sbjct: 324 IRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAI 383

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK---NLVSWNVMIAV 273
            + + ME   +KP+     ++L + ++    +        +  D +    L  +  +  +
Sbjct: 384 SLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADL 443

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
                   EA +    M    IEP     +++L AC     + L  K+ + +     Q N
Sbjct: 444 LGRVGRLEEAYEFISDMH---IEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQ-N 499

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMR 361
           +     L ++Y+  G   +AR +   MR
Sbjct: 500 IGAYVLLSNIYSAAGRWKDARKLRIAMR 527


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 165/446 (36%), Positives = 261/446 (58%), Gaps = 42/446 (9%)

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
            Y  +  +  ++SV     D +T+P VLK+     S+ +G  +H  ++++GL ++L+   
Sbjct: 114 FYASSGDIDSSVSVFNGIGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVAT 173

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            L+ +YGKCG + +A +V ++M  +DV +WN+++AGY ++G  D AL +           
Sbjct: 174 SLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAI----------- 222

Query: 230 DADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
                                     F ++  +N+VSW  MI+ Y+ + +  +A+ L+ +
Sbjct: 223 --------------------------FERMPWRNIVSWTTMISGYSQSGLAQQALSLFDE 256

Query: 290 M--EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
           M  E  G+ PN +++ SVLPAC  LS L  GR+IH    R  L  N  +  AL  MYAKC
Sbjct: 257 MVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKC 316

Query: 348 GSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
           GSL +AR  FD++    +++++W +MI+AY   G G  AV+ F +M+ +G+ PD I F  
Sbjct: 317 GSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTG 376

Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME 465
           +LS CSH+GL++ G  YF  M+  Y + PR+EH+AC+ DLLGRAG++ EA  L+ +MPM 
Sbjct: 377 LLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMP 436

Query: 466 PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVR 525
               IWGSL+AAC  + N+++   AA  +F L P  +G YVLLSN+YA+AGRW +V ++R
Sbjct: 437 AGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLR 496

Query: 526 KFMNSKGIKKMPGAS-VEMNDQVQII 550
             + S+G KK PG S +E+N +  + 
Sbjct: 497 AIVKSQGTKKSPGCSWIEINGKAHMF 522



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 35/226 (15%)

Query: 54  IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT---------------------- 91
           +I+   L  +  +   L+  YG CG++ D   VFD +T                      
Sbjct: 159 LILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDA 218

Query: 92  ---------NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH--GFDPDCYTYPCVLKAC 140
                     +N+V +  +I  Y  + L   AL ++  M     G  P+  T   VL AC
Sbjct: 219 ALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPAC 278

Query: 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM--PSKDVVT 198
           +  ++L  G QIH    ++GL+ N      L AMY KCG L +AR   + +    K+++ 
Sbjct: 279 AQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIA 338

Query: 199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           WN+M+  YA  G   +A+   REM    I+PD  T   LL   +++
Sbjct: 339 WNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHS 384



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 26/178 (14%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT--NKNVVFFNVLIRSYVNNYLYYDALHV 117
           L+SN S+ + L   Y  CG +VD R+ FD++    KN++ +N +I +Y +      A+  
Sbjct: 299 LNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVST 358

Query: 118 YKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY-----NLFNGNGLV 172
           ++ M   G  PD  T+  +L  CS           H  +V VGL Y       ++ N  V
Sbjct: 359 FREMIQAGIQPDDITFTGLLSGCS-----------HSGLVDVGLKYFNHMSTTYSINPRV 407

Query: 173 AMY-------GKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
             Y       G+ G L EA +++ +MP       W S++A   ++   + A    R++
Sbjct: 408 EHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKL 465


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 177/545 (32%), Positives = 288/545 (52%), Gaps = 36/545 (6%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           P   +  +LHA  +    LH N      L+  Y   G++ +   VFDE+  ++V  +N +
Sbjct: 80  PGPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAM 139

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           +     N    DA+ +   M   G   D  T   VL  C       + L +H   VK GL
Sbjct: 140 LSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGL 199

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
              LF  N L+ +YGK G L EA  V   M  +D+VTWNS+++   Q G+   A+++   
Sbjct: 200 SGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHG 259

Query: 222 MESLRIKPDADTMASLLPSVTNTSPE---------------------------------- 247
           M    + PD  T+ SL  +V     E                                  
Sbjct: 260 MMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMS 319

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVASVL 306
            + + +++F  L ++++VSWN +I  Y  N +  EA+ +Y  M  H G++P   +  SVL
Sbjct: 320 KIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVL 379

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
           PA   L  L  G ++H    +  L  ++ +   L+D+YAKCG L EA  +F+ M  +   
Sbjct: 380 PAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTG 439

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
            W ++I+  G+ G G  A++LFS+M    + PD + FVS+L+ACSHAGL+++GR +F +M
Sbjct: 440 PWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLM 499

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
              Y +VP  +H+ C+VD+LGRAG+++EA++ I+ MP++P+  +WG+L+ AC ++ N+++
Sbjct: 500 QTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEM 559

Query: 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMND 545
           G +A+ ++F L P   GYYVL+SN+YAK G+W  V  VR  +  + ++K PG +S+E+  
Sbjct: 560 GKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKG 619

Query: 546 QVQII 550
            V + 
Sbjct: 620 SVSVF 624



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 202/420 (48%), Gaps = 57/420 (13%)

Query: 124 HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY-NLFNGNGLVAMYGKCGCLK 182
           H   PD +T+P +++A  G  S     Q+H   +++GL + N+F    LV  Y + G + 
Sbjct: 63  HPLRPDSFTFPPLVRAAPGPAS---AAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVA 119

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
           EA RV ++MP +DV  WN+M++G  +N R  +A+ +   M    +  DA T++S+LP   
Sbjct: 120 EAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCV 179

Query: 243 NTSPE------NVLSVKE---------------------------MFLKLDNKNLVSWNV 269
                      +V +VK                            +F  +  ++LV+WN 
Sbjct: 180 VLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNS 239

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNA---ISVASVLPACGDLSALLLGRKIHRYVE 326
           +I+        A AV+L+  M   G+ P+    +S+AS +  CGD    L  + +H YV 
Sbjct: 240 IISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGD---ELGAKSVHCYVR 296

Query: 327 RKKLQ-PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
           R+     ++   NA+VDMYAK   +  A+ VFD +  +DVVSW ++I+ Y  +G   +A+
Sbjct: 297 RRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAI 356

Query: 386 ALFSKML-MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
            +++ M    GL P    FVSVL A S+ G L++G      ++ +  L   +    CL+D
Sbjct: 357 RIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQG-MRMHALSIKTGLNLDVYVTTCLID 415

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA----------ACCLYSNMDIGILAADHI 494
           L  + GK+ EA  L + MP   +   W +++A          A  L+S M    +  DH+
Sbjct: 416 LYAKCGKLVEAMFLFEHMPRR-STGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHV 474


>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
 gi|194706828|gb|ACF87498.1| unknown [Zea mays]
          Length = 570

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 172/480 (35%), Positives = 259/480 (53%), Gaps = 39/480 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+ +Y + G + D+R  FDE+  +NVV +N +I  Y       +A  ++  M   GF  D
Sbjct: 86  LLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFLGD 145

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +T   +L ACS   +L  G  +HC ++  G   +L  G  LV MY KCG L  ARR   
Sbjct: 146 EFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFE 205

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            MP K VV+W SM+    ++G  D A                                  
Sbjct: 206 MMPIKSVVSWTSMLCAQTKHGSVDAA---------------------------------- 231

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
              +  F  +  +N VSWN MI+ Y       EA+DLY QM+ HG  P+  ++  VL AC
Sbjct: 232 ---RCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSAC 288

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
           G +  L +G+ +H Y+      P++ L N+L+DMYAKCG +  A  +F +M  ++VVSW 
Sbjct: 289 GRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWN 348

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
            +I    M G+  DA+  F  M+ +   PD I FV++LS+CSH GLLE G++YF+ M   
Sbjct: 349 VIIGGLAMHGRALDAITFFRSMVRN-TSPDGITFVALLSSCSHGGLLETGQHYFESMRHV 407

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y +   +EH+AC+VDLLGR G +E+A  LIK+MPM+P+  +WG+L+ AC ++ N+ IG  
Sbjct: 408 YNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQ 467

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
               +  L     G +VL+SN+  +  +W D+KR+RK M  +G +K  G +S+E+N+ + 
Sbjct: 468 VIKQLLELEGISGGLFVLISNLLYETNQWEDMKRLRKLMKERGTRKDMGVSSIEINNSIH 527



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/457 (24%), Positives = 182/457 (39%), Gaps = 102/457 (22%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +FD I + + V +N + R+Y N+    +AL +++ M   G  P+ +T P V+KAC+ + +
Sbjct: 1   MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
               L +H   +K+G     F G   VA                          N+++  
Sbjct: 61  WDNALAVHGVALKLG-----FVGQVFVA--------------------------NALLHS 89

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           YA  G   ++                                     +  F ++  +N+V
Sbjct: 90  YASAGSLGDS-------------------------------------RRFFDEMAGRNVV 112

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           SWN MI  YA      EA  L+ +M   G   +  ++AS+L AC     L  GR +H  +
Sbjct: 113 SWNSMIGGYAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLM 172

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS--------------- 370
                  +L L  ALVDMY+KCG L  AR  F+ M  + VVSWTS               
Sbjct: 173 LVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAAR 232

Query: 371 ----------------MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
                           MIS Y   GQ ++A+ L+ +M   G  PD    V VLSAC   G
Sbjct: 233 CWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIG 292

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
            L  G+     + +     P I     L+D+  + G+V+ A  L ++M    N   W  +
Sbjct: 293 DLTVGKMVHLYIRDNIH-NPDISLINSLLDMYAKCGQVDTAIRLFREM-CNRNVVSWNVI 350

Query: 475 VAACCLYSN-MDIGILAADHIFHLAPNQSGYYVLLSN 510
           +    ++   +D        + + +P+   +  LLS+
Sbjct: 351 IGGLAMHGRALDAITFFRSMVRNTSPDGITFVALLSS 387



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 129/278 (46%), Gaps = 5/278 (1%)

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           MF  + + + V +N +   Y N+  P EA+ L+  M   G+ PN  ++  V+ AC    A
Sbjct: 1   MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
                 +H    +      + + NAL+  YA  GSL ++R  FD+M  ++VVSW SMI  
Sbjct: 61  WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGG 120

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
           Y  +G   +A ALF +M   G   D     S+L ACS  G LE GR    +M      V 
Sbjct: 121 YAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVD 180

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
            I   A LVD+  + G +  A    + MP++     W S++ A   + ++D      DH+
Sbjct: 181 LILGGA-LVDMYSKCGDLCMARRCFEMMPIKSVVS-WTSMLCAQTKHGSVDAARCWFDHM 238

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532
                N   +  ++S  Y + G++ +   + K M S G
Sbjct: 239 --PERNTVSWNTMIS-CYVQRGQYHEALDLYKQMQSHG 273



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 8/190 (4%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGL--KLMRTYGACGQMVDTRHVFDEITNKNVVF 97
           +  D+   K +H  I  N H   NP I L   L+  Y  CGQ+     +F E+ N+NVV 
Sbjct: 290 RIGDLTVGKMVHLYIRDNIH---NPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVS 346

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +NV+I     +    DA+  +++M V    PD  T+  +L +CS    L  G     S+ 
Sbjct: 347 WNVIIGGLAMHGRALDAITFFRSM-VRNTSPDGITFVALLSSCSHGGLLETGQHYFESMR 405

Query: 158 KV-GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEA 215
            V  + + + +   +V + G+ G L++A  ++ +MP K DVV W +++     +G     
Sbjct: 406 HVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIG 465

Query: 216 LDVCREMESL 225
             V +++  L
Sbjct: 466 KQVIKQLLEL 475


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 168/464 (36%), Positives = 268/464 (57%), Gaps = 9/464 (1%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VF  I N NV  +N++I+  + N   + A++ Y  M +    P+ +TYP + KACS + +
Sbjct: 89  VFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQA 147

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           +  G QIH  VVK G+  ++   +  + MY   G L++AR++     S DVV WN+M+ G
Sbjct: 148 VQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGES-DVVCWNTMIDG 206

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           Y + G  + A  +  +M    I    + M + L    N         +++F ++  ++ +
Sbjct: 207 YLKCGVLEAAKGLFAQMPVKNIG-SWNVMINGLAKGGNLG-----DARKLFDEMSERDEI 260

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           SW+ M+  Y +     EA++++ QM+     P    ++SVL AC ++ A+  GR +H Y+
Sbjct: 261 SWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYL 320

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
           +R  ++ +  L  AL+DMYAKCG L     VF++M+ +++ +W +MI    + G+  DA+
Sbjct: 321 KRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDAL 380

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
            LFSK+    + P+ I  V VL+AC+HAG +++G   F+ M E Y + P +EH+ C+VDL
Sbjct: 381 ELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDL 440

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           LGR+G   EA DLI  MPM+PN  +WG+L+ AC ++ N D+       +  L P  SG Y
Sbjct: 441 LGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRY 500

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           VLLSNIYAK GR+ DV ++RK M  +GIK +PG S V++N  V 
Sbjct: 501 VLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVH 544



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 141/292 (48%), Gaps = 9/292 (3%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G + D R +FDE++ ++ + ++ ++  Y++   Y +AL +++ M      P  +    VL
Sbjct: 242 GNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVL 301

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
            ACS   ++  G  +H  + +  +  +   G  L+ MY KCG L     V  +M  +++ 
Sbjct: 302 AACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIF 361

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN----VLSVK 253
           TWN+M+ G A +GR ++AL++  +++  R+KP+  T+  +L +  +    +    +    
Sbjct: 362 TWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTM 421

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
             F  +D + L  +  M+ +   + + +EA DL   M    ++PNA    ++L AC    
Sbjct: 422 REFYGVDPE-LEHYGCMVDLLGRSGLFSEAEDLINSMP---MKPNAAVWGALLGACRIHG 477

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
              L  ++ + +   + Q + R    L ++YAK G   +   +   M+ + +
Sbjct: 478 NFDLAERVGKILLELEPQNSGRYV-LLSNIYAKVGRFDDVSKIRKLMKDRGI 528



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 123/256 (48%), Gaps = 14/256 (5%)

Query: 235 ASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
            +LL    N    N     ++F  + N N+  WN++I     N+   +A+  Y +M +  
Sbjct: 69  GALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDA 128

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
             PN  +  ++  AC    A+  GR+IH +V +  +  ++ +++A + MYA  G L +AR
Sbjct: 129 -RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDAR 187

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            +F      DVV W +MI  Y   G    A  LF++M +  +   ++    +++  +  G
Sbjct: 188 KMFYSGE-SDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNV----MINGLAKGG 242

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME---PNERIW 471
            L + R  F  M+E+ ++      ++ +VD    AG+ +EA ++ +QM  E   P   I 
Sbjct: 243 NLGDARKLFDEMSERDEI-----SWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFIL 297

Query: 472 GSLVAACCLYSNMDIG 487
            S++AAC     +D G
Sbjct: 298 SSVLAACSNIGAIDQG 313



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 84/178 (47%), Gaps = 4/178 (2%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y  CG++     VF+E+  + +  +N +I     +    DAL ++  +    
Sbjct: 331 LGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGR 390

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV-GLDYNLFNGNGLVAMYGKCGCLKEA 184
             P+  T   VL AC+ +  +  GL+I  ++ +  G+D  L +   +V + G+ G   EA
Sbjct: 391 MKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEA 450

Query: 185 RRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
             ++N MP K +   W +++     +G FD A  V + +  L ++P       LL ++
Sbjct: 451 EDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKIL--LELEPQNSGRYVLLSNI 506


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 199/596 (33%), Positives = 313/596 (52%), Gaps = 62/596 (10%)

Query: 6   LLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKT----------LKKLHAQII 55
           LL  +F   K V+ L L  Q   ++ DA   + ++ PD  T          L+KL    +
Sbjct: 73  LLRSYFLEGKWVETLSLFHQ---MNADA---VTEERPDNYTVSIALKSCSGLQKLELGKM 126

Query: 56  IN----QHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLY 111
           I+    + + S+  +G  L+  Y  CGQM D   VF E    +VV +  +I  Y  N   
Sbjct: 127 IHGFLKKKIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSP 186

Query: 112 YDALHVYKNMSV-HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG 170
             AL  +  M V     PD  T      AC+  +   +G  +H  V + G D  L   N 
Sbjct: 187 ELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANS 246

Query: 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
           ++ +YGK G ++ A  +  +MP KD+++W+SMVA YA NG    AL++  EM   RI+ +
Sbjct: 247 ILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELN 306

Query: 231 ADTMASLLPSVTNTS------------------------------------PENVLSVKE 254
             T+ S L +  ++S                                    PEN +   E
Sbjct: 307 RVTVISALRACASSSNLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAI---E 363

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F ++  K++VSW V+ + YA   M  +++ ++  M  +G  P+AI++  +L A  +L  
Sbjct: 364 LFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGI 423

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           +     +H +V +     N  +  +L+++YAKC S+  A  VF  +R  DVV+W+S+I+A
Sbjct: 424 VQQALCLHAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGLRHTDVVTWSSIIAA 483

Query: 375 YGMSGQGYDAVALFSKML-MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
           YG  GQG +A+ L  +M   S + P+ + FVS+LSACSHAGL+EEG   F +M  +Y+L+
Sbjct: 484 YGFHGQGEEALKLSHQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLM 543

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P IEH+  +VDLLGR G++++A D+I  MPM+    +WG+L+ AC ++ N+ IG LAA +
Sbjct: 544 PNIEHYGIMVDLLGRMGELDKALDMINNMPMQAGPHVWGALLGACRIHQNIKIGELAALN 603

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           +F L PN +GYY LLSNIY     W D  ++R  +    +KK+ G S VE+ ++V 
Sbjct: 604 LFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRLKKIVGQSMVEIKNEVH 659



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 158/580 (27%), Positives = 262/580 (45%), Gaps = 95/580 (16%)

Query: 44  IKTLKKLHAQIIINQHLHSN-PSIGL--------KLMRTYGACGQMVDTRHVFDEITNKN 94
           +K L+   ++I I Q LHS    +GL        KL   Y     +     +F+E   K 
Sbjct: 8   VKLLETCCSKISITQ-LHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKT 66

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD---PDCYTYPCVLKACSGSNSLLVGLQ 151
           V  +N L+RSY     + + L ++  M+        PD YT    LK+CSG   L +G  
Sbjct: 67  VYLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKM 126

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           IH   +K  +D ++F G+ L+ +Y KCG + +A +V  + P  DVV W S++ GY QNG 
Sbjct: 127 IH-GFLKKKIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGS 185

Query: 212 FDEALDVCREMESL-RIKPDADTMASLLPSVTNTSPEN---------------------- 248
            + AL     M  L ++ PD  T+ S   +    S  N                      
Sbjct: 186 PELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLAN 245

Query: 249 -----------VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297
                      +     +F ++  K+++SW+ M+A YA+N     A++L+ +M    IE 
Sbjct: 246 SILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIEL 305

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           N ++V S L AC   S L  G++IH+       + ++ +  AL+DMY KC S   A  +F
Sbjct: 306 NRVTVISALRACASSSNLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELF 365

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           ++M  +DVVSW  + S Y   G  + ++ +F  ML +G  PD+IA V +L+A S  G+++
Sbjct: 366 NRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQ 425

Query: 418 EGRYYFKIMT---------------EQY----------KLVPRIEH-----FACLVDLLG 447
           +       +T               E Y          K+   + H     ++ ++   G
Sbjct: 426 QALCLHAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGLRHTDVVTWSSIIAAYG 485

Query: 448 RAGKVEEAYDLIKQMP----MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503
             G+ EEA  L  QM     ++PN+  + S+++AC     ++ GI     +FH+  N+  
Sbjct: 486 FHGQGEEALKLSHQMSNHSDVKPNDVTFVSILSACSHAGLIEEGI----KMFHVMVNE-- 539

Query: 504 YYVLLSNIYAKA------GRWGDVKRVRKFMNSKGIKKMP 537
            Y L+ NI          GR G++ +    +N+  ++  P
Sbjct: 540 -YQLMPNIEHYGIMVDLLGRMGELDKALDMINNMPMQAGP 578


>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Brachypodium distachyon]
          Length = 554

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 176/526 (33%), Positives = 287/526 (54%), Gaps = 47/526 (8%)

Query: 32  DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
           DA    L      + L ++HA  +    L  +  +  +++    A G++     VF ++ 
Sbjct: 14  DAVMASLRACASFRDLLRVHAHAV-RLSLSQSSYLATQIVHLCNAHGRVAHATRVFSQVR 72

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP-------DCYTYPCVLKACSGSN 144
             N+   N +I++Y  N+ + DA+ VY  M      P       D +TYP +LKAC G  
Sbjct: 73  EPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLM 132

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
           +L +G Q+H  VV+ G + N    N L+ MY + G L  AR+V + M  +DVV+WN++++
Sbjct: 133 ALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNTVIS 192

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL 264
            +A+ G+  +A                                     + +F  + +K +
Sbjct: 193 AHARLGQMRKA-------------------------------------RAVFNSMPDKTV 215

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           VSW  +++ Y      + AV+ +  M++ G EP+ +S+ +VLPAC  L AL LGR I+ Y
Sbjct: 216 VSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAY 275

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
             R ++     + NALV+MYAKCG + +A  +F+ M  +DV+SW++M+      G+  +A
Sbjct: 276 CNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWSTMVGGLAAHGRAQEA 335

Query: 385 VALFSKMLMSGLC-PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV 443
           V LF++M   G   P+ I FV +LSACSHAGLL+EG  YF  M + Y + P +EH+ C+V
Sbjct: 336 VQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRMNDVYGIEPGVEHYGCIV 395

Query: 444 DLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503
           DLL R+G+++   DLI  MP+  + +IWGS++ AC  + ++D  +LAA+ +  L P   G
Sbjct: 396 DLLCRSGQIQRTLDLISDMPLPADAKIWGSVLNACRSHGDVDTAVLAAERLVALEPEDVG 455

Query: 504 YYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
             V+L+N+YA A RW +V   RK + S+ ++K PG S +E+++ VQ
Sbjct: 456 NLVMLANVYAAARRWSEVANTRKAIRSRSMRKTPGCSLIEVDNVVQ 501



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 107/265 (40%), Gaps = 36/265 (13%)

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           +V + L AC     LL   ++H +  R  L  +  L   +V +    G +  A  VF Q+
Sbjct: 15  AVMASLRACASFRDLL---RVHAHAVRLSLSQSSYLATQIVHLCNAHGRVAHATRVFSQV 71

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-------DSIAFVSVLSACSHA 413
           R  ++    +MI AY  + +  DA+ ++ +ML     P       D   +  +L AC   
Sbjct: 72  REPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGL 131

Query: 414 GLLEEGR----YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNER 469
             L+ G+    +  +   E   +V        L+++  RAG +  A  +   M  E +  
Sbjct: 132 MALDLGKQVHGHVVRSGCESNAIVQN-----SLIEMYTRAGDLVLARKVFDGM-QERDVV 185

Query: 470 IWGSLVAACCLYSNMDIGILAADHIFHLAPNQS--GYYVLLSNIYAKAGRWGDVKRVRKF 527
            W ++++A      M      A  +F+  P+++   +  L+S  Y  AG +       + 
Sbjct: 186 SWNTVISAHARLGQMR----KARAVFNSMPDKTVVSWTALVSG-YTAAGDFSGAVEAFRL 240

Query: 528 MNSKGIKKMPGASVEMNDQVQIIAL 552
           M  +G +          D V I+A+
Sbjct: 241 MQMEGFEP---------DDVSIVAV 256


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 195/541 (36%), Positives = 292/541 (53%), Gaps = 63/541 (11%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNK--NVVFFNVLIRSYVNNYLYYDALHVYKNMS-VHGF 126
           L+  YG CG       VFDE+     +VV +  LI +Y +N    +A   +  M  + G+
Sbjct: 93  LVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGW 152

Query: 127 DP------DCYTYPCVLKACS---GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK 177
           D       D  +   ++ AC+   GSN L  G  +H  VVK G   +   GN +V MY  
Sbjct: 153 DGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSA 212

Query: 178 CGCLKEARRVLNDMP--SKDVVTWNSMVAGYAQNGRFDEALDVCREMES---LRIKPDAD 232
           C  +  A RV N +P   +DVV+WNS+++G+  NG  + AL    +M S     ++P+  
Sbjct: 213 CKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRV 272

Query: 233 TMASLLPSVTN-----TSP--------------------------------ENVLSVKEM 255
           T+ +LL S        TS                                  N+   +E+
Sbjct: 273 TVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREI 332

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG------IEPNAISVASVLPAC 309
           F  ++ KN+V W+ MIA Y   S P EA+ L+ QM + G      ++PNA+++ SV+ AC
Sbjct: 333 FDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAAC 392

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM--RCQDVVS 367
             L A      IH+Y     L  + R+ +AL+DM AKCG +   R VF +M    + VVS
Sbjct: 393 SRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVS 452

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W+SMI A G+ G+G  A+ LFS+M   G  P+ I ++SVLSACSHAGL+E+G+  F  M 
Sbjct: 453 WSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSME 512

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
           + Y + P  +H+ACLVDLLGRAG ++EA+++I  MP++ +  +WGSL+AAC L+ N  +G
Sbjct: 513 KDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLG 572

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
            +    I  L  N  G++VLL+N+Y  AGRW DV R+R  +   G++K+PG S +E+ ++
Sbjct: 573 EIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNE 632

Query: 547 V 547
           V
Sbjct: 633 V 633



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 209/454 (46%), Gaps = 73/454 (16%)

Query: 90  ITNKNVVFFNVLI-RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLV 148
           I++K+   +N LI ++   N     AL  +  M  H    + +T+P +LKAC+    LL 
Sbjct: 13  ISHKDTFHWNSLIAKNATQNP--QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70

Query: 149 GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP--SKDVVTWNSMVAGY 206
            LQ+H  + ++GL  + F+   LV  YGKCG    A +V ++MP  S DVV+W ++++ Y
Sbjct: 71  TLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130

Query: 207 AQNGRFDEALDVCREMESLR-------IKPDADTMASLLPSVTNTSPENVLS-------- 251
           + NG  DEA      M  +R          D  ++ +L+ +       N L         
Sbjct: 131 SSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGL 190

Query: 252 -VKEMF-----------------------------LKLDNKNLVSWNVMIAVYANNSMPA 281
            VK  F                             + ++ +++VSWN +I+ +  N    
Sbjct: 191 VVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAE 250

Query: 282 EAVDLYLQMEVHG---IEPNAISVASVLPACGDLSALLLGRKIHRYVERKK----LQPNL 334
            A+  +  M   G   +EPN ++V ++L +C +L  +     +H Y+  +     +  ++
Sbjct: 251 RALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDV 310

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            +  AL+DM+A+CG+L  AR +FD +  ++VV W++MI+ Y       +A+ LF +MLM 
Sbjct: 311 VVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLME 370

Query: 395 G------LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA----CLVD 444
           G      + P+++  VSV++ACS  G           M  +Y +   ++  A     L+D
Sbjct: 371 GNMVGVEVKPNAVTLVSVIAACSRLGASRSAS-----MIHKYAVATGLDQDARIASALID 425

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERI-WGSLVAA 477
           +  + G +E    +  +M       + W S++ A
Sbjct: 426 MCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGA 459


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 183/587 (31%), Positives = 311/587 (52%), Gaps = 74/587 (12%)

Query: 31  GDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGAC-----GQMVDTRH 85
           G++   +L+K   +  LK++H+  I    L S+P   L   R    C     G+M+  R 
Sbjct: 7   GESPISLLEKCKSMYQLKQIHSHTI-KMGLSSDP---LFQKRVIAFCCAHESGKMIYARQ 62

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VFD I    +  +N +I+ Y       + + +Y  M      PD +T+P +LK  + + +
Sbjct: 63  VFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMA 122

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           L  G  +    VK G D NLF     + M+  C  +  AR+V +   + +VVTWN M++G
Sbjct: 123 LQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSG 182

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT----------------------N 243
           Y +  +F ++  +  EME   + P++ T+  +L + +                      N
Sbjct: 183 YNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERN 242

Query: 244 TSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYAN-----------NSMPA 281
              ENVL             + +F  + N++++SW  ++  +AN           + +P 
Sbjct: 243 LILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPE 302

Query: 282 --------------------EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
                               EA+ L+ +M++  ++P+  ++ S+L AC  L AL LG  +
Sbjct: 303 RDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWV 362

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
             Y+++  ++ +  + NAL+DMY KCG++ +A+ VF +M  +D  +WT+MI    ++G G
Sbjct: 363 KTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHG 422

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
            +A+A+FS M+ + + PD I ++ VL AC+HAG++E+G+ +F  MT Q+ + P + H+ C
Sbjct: 423 EEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGC 482

Query: 442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501
           +VDLLGRAG++EEA+++I  MP++PN  +WGSL+ AC ++ N+ +  +AA  I  L P  
Sbjct: 483 MVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPEN 542

Query: 502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV-EMNDQV 547
              YVLL NIYA   RW ++++VRK M  +GIKK PG S+ E+N  V
Sbjct: 543 GAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNV 589



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 149/327 (45%), Gaps = 30/327 (9%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           +   GQ+   R  FD+I  ++ V +  +I  Y+    + +AL +++ M +    PD +T 
Sbjct: 284 FANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTM 343

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             +L AC+   +L +G  +   + K  +  + F GN L+ MY KCG + +A++V  +M  
Sbjct: 344 VSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHH 403

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK 253
           KD  TW +M+ G A NG  +EAL +   M    I PD  T   +L + T+     V   +
Sbjct: 404 KDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGM--VEKGQ 461

Query: 254 EMFLKLDNK-----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
             F+ +  +     N+  +  M+ +        EA ++ + M V   +PN+I   S+L A
Sbjct: 462 SFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPV---KPNSIVWGSLLGA 518

Query: 309 CGDLSALLLGRKIHRYVERKKLQP----NLRLENA-----LVDMYAKCGSLTEARTVFDQ 359
           C          ++H+ V+  ++       L  EN      L ++YA C      R V  +
Sbjct: 519 C----------RVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQV-RK 567

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVA 386
           +  +  +  T   S   ++G  Y+ VA
Sbjct: 568 LMMERGIKKTPGCSLMELNGNVYEFVA 594


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 186/516 (36%), Positives = 280/516 (54%), Gaps = 65/516 (12%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+    ++HA ++      ++  +G  L+  Y  CG +     VF  +  +N+V +N LI
Sbjct: 162 DLNMGTQVHA-LVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLI 220

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-L 161
             Y  N    +AL V+  M   G +PD  T   V+ AC+   +L  GLQIH  VVK    
Sbjct: 221 TCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKF 280

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             +L  GN LV MY KC  + EARRV + M  ++VV+  SMV+GYA+             
Sbjct: 281 RDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAA----------- 329

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
                                     +V + + MF K+  +N+VSWN +IA Y  N    
Sbjct: 330 --------------------------SVKAARFMFSKMTQRNVVSWNALIAGYTQNGENE 363

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
           EA+ L+  ++   I P   +  ++L      S + +G                   N+L+
Sbjct: 364 EALRLFRLLKRESIWPTHYTFGNLLK-----SDIFVG-------------------NSLI 399

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           DMY KCGS+ +   VF++M+ +D VSW ++I  Y  +G G +A+ +F KML+ G  PD +
Sbjct: 400 DMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHV 459

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
             + VL ACSHAGL+EEGR+YF  M E++ L+P  +H+ C+VDLLGRAG + EA +LI+ 
Sbjct: 460 TMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEA 518

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
           MP+ P+  +WGSL+AAC ++ N+++G  AA+ +  + P  SG YVLLSN+YA+ GRWGDV
Sbjct: 519 MPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDV 578

Query: 522 KRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
            RVRK M  +G+ K PG S +E+  +V +  +  +S
Sbjct: 579 VRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKS 614



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 193/423 (45%), Gaps = 86/423 (20%)

Query: 121 MSVHGFDPDCY-----TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMY 175
           M+ HG   D Y      +  +L +C  S S      +H  ++       +F  N L+ +Y
Sbjct: 1   MAKHGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVY 60

Query: 176 GKCGCLKEARRVLNDMPSKDVVT-------------------------------WNSMVA 204
           GKC CL +AR++ + MP ++  T                               WNSMV+
Sbjct: 61  GKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVS 120

Query: 205 GYAQNGRFDE----------------------ALDVCREMESLRIKPDADTMASLLPSVT 242
           G+AQ+ RF+E                      AL  C  +  L +      + S     T
Sbjct: 121 GFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYST 180

Query: 243 N-----------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
           +           +   +V   +E+F  +  +NLV+WN +I  Y  N   +EA++++++M 
Sbjct: 181 DVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMM 240

Query: 292 VHGIEPNAISVASVLPACGDLSALLLGRKIH-RYVERKKLQPNLRLENALVDMYAKCGSL 350
             G+EP+ +++ASV+ AC  L AL  G +IH R V+  K + +L L NALVDMYAKC  +
Sbjct: 241 DSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKV 300

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
            EAR VFD+M  ++VVS TSM+S Y  +     A  +FSKM    +    +++ ++++  
Sbjct: 301 NEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNV----VSWNALIAGY 356

Query: 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFA-----------CLVDLLGRAGKVEEAYDLI 459
           +  G  EE    F+++  +  + P    F             L+D+  + G +E+   + 
Sbjct: 357 TQNGENEEALRLFRLLKRE-SIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVF 415

Query: 460 KQM 462
           ++M
Sbjct: 416 EKM 418


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 189/530 (35%), Positives = 300/530 (56%), Gaps = 39/530 (7%)

Query: 16  PVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG 75
           P   L+LS  +T     +C     K P  + LK+LHA I I      +P    ++++   
Sbjct: 16  PQPPLILSKPFT-----SC-----KTP--RDLKQLHA-IFIKTGQIQDPLTAAEVIKFCA 62

Query: 76  ACGQMVD-TRHVFDEITNKNVVFFNVLIRSYV---NNYLYYDALHVYKNMSVHG-FDPDC 130
              + +D  R VF ++   N   +N ++R      + +L  +AL ++  M   G   P+ 
Sbjct: 63  FSSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNR 122

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
           +T+P VLKAC+ ++ L  G QIH  +VK G   + F  + LV MY  C  +++A  +   
Sbjct: 123 FTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF-- 180

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL 250
              K+VV ++                    +ME  + K D + +   +         ++ 
Sbjct: 181 --CKNVVDFDGSC-----------------QMELDKRKQDGNVVLWNIMIDGQVRLGDIK 221

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
           S K +F ++  +++VSWNVMI+ YA N    EA++L+ +M+   I+PN +++ SVLPA  
Sbjct: 222 SAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIA 281

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
            + AL LG+ IH Y  + K++ +  L +ALVDMY+KCGS+ EA  VF+ +  ++ ++W++
Sbjct: 282 RIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSA 341

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           +I A+ M G+  DA+  F  M  +G+ P+ +A++ +LSACSHAGL+EEGR +F  M +  
Sbjct: 342 IIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVV 401

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            L PRIEH+ C+VDLLGRAG +EEA +LI+ MP+EP++ IW +L+ AC ++ N+ +G   
Sbjct: 402 GLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERV 461

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           A+ +  LAP+ SG YV LSN+YA  G W  V RVR  M    I+K PG S
Sbjct: 462 AETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCS 511


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 164/478 (34%), Positives = 267/478 (55%), Gaps = 42/478 (8%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G +   R VF+E+  K  V +N +I  YV++ +  +A  +++ M +     D +T+  VL
Sbjct: 242 GDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVL 301

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDY----NLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
            AC+       G  +H  ++++  ++     L   N LV  Y KCG +  ARR+ ++M  
Sbjct: 302 SACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTL 361

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK 253
           KDVV+WN++++GY ++   D+A++V  EM                               
Sbjct: 362 KDVVSWNTILSGYVESSCLDKAVEVFEEMPY----------------------------- 392

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
                   KN +SW VM++ Y +     +A+ L+ +M    ++P   + A  + ACG+L 
Sbjct: 393 --------KNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELG 444

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           AL  G+++H ++ +   + +    NAL+ MYA+CG++ EA  +F  M   D VSW +MIS
Sbjct: 445 ALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMIS 504

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
           A G  G G +A+ LF +M+  G+ PD I+F++VL+AC+H+GL++EG  YF+ M   + ++
Sbjct: 505 ALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGII 564

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P  +H+  L+DLLGRAG++ EA DLIK MP EP   IW ++++ C    +M++G  AAD 
Sbjct: 565 PGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQ 624

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           +F + P   G Y+LLSN Y+ AG W D  RVRK M  +G+KK PG S +E  ++V + 
Sbjct: 625 LFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVF 682



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 136/316 (43%), Gaps = 48/316 (15%)

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGR 319
            ++ V  N +I+ YA  S  A AV ++  +   G + P+  S  ++L A G L  + +  
Sbjct: 118 RRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRH 177

Query: 320 --KIHRYVERKKLQPNLRLENALVDMYAKCGS---LTEARTVFDQMRCQDVVSWTSM--- 371
             ++H  V +      L + NALV +Y KC S     +AR V D+M  +D ++WT+M   
Sbjct: 178 CAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVG 237

Query: 372 ----------------------------ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
                                       IS Y  SG   +A  LF +M++  +  D   F
Sbjct: 238 YVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTF 297

Query: 404 VSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPR--IEHFACLVDLLGRAGKVEEAYDLIK 460
            SVLSAC++ GL   G+  + +I+  Q   VP   +     LV    + G +  A  +  
Sbjct: 298 TSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFD 357

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP--NQSGYYVLLSNIYAKAGRW 518
            M ++ +   W ++++     S +D  +     +F   P  N+  + V++S  Y   G  
Sbjct: 358 NMTLK-DVVSWNTILSGYVESSCLDKAV----EVFEEMPYKNELSWMVMVSG-YVHGGFA 411

Query: 519 GDVKRVRKFMNSKGIK 534
            D  ++   M S+ +K
Sbjct: 412 EDALKLFNKMRSENVK 427


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 178/512 (34%), Positives = 288/512 (56%), Gaps = 50/512 (9%)

Query: 86  VFDEITNKNVVF-FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
           +F+   +K  VF +N +I     +    +AL  + +M      P   ++PC +KACS   
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLL 90

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
            +  G Q H      G   ++F  + L+ MY  CG L++AR+V +++P +++V+W SM+ 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS------------------------ 240
           GY  NG    ALD     + L I+ + D     L S                        
Sbjct: 151 GYDLNG---NALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHS 207

Query: 241 ------------VTNT--------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                       V NT            V   +++F ++ +K+ VS+N +++VYA + M 
Sbjct: 208 FVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMS 267

Query: 281 AEAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
            EA D++ ++ +   +  N I++++VL A     AL +G+ IH  V R  L+ ++ +  +
Sbjct: 268 NEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTS 327

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           ++DMY KCG +  AR  FD+M+ ++V SWT+MI+ YGM G    A+ LF  M+ SG+ P+
Sbjct: 328 IIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPN 387

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
            I FVSVL+ACSHAGL + G ++F  M  ++ + P +EH+ C+VDLLGRAG +++AYDLI
Sbjct: 388 YITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLI 447

Query: 460 KQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519
           ++M MEP+  IW SL+AAC ++ N+++  ++   +F L P+  GYY+LLS+IYA +GRW 
Sbjct: 448 QKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWK 507

Query: 520 DVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           DV+RVR  M ++G+ K PG S +E+N +V + 
Sbjct: 508 DVERVRMTMKNRGLVKPPGFSLLELNGEVHVF 539



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 186/386 (48%), Gaps = 49/386 (12%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC+ +LD    I + K+ H Q  +  +  S+  +   L+  Y  CG++ D R VFDEI  
Sbjct: 85  ACSSLLD----IFSGKQTHQQAFVFGY-QSDIFVSSALIVMYSTCGKLEDARKVFDEIPK 139

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY------PCVLKACSGSNSL 146
           +N+V +  +IR Y  N    DA+ ++K++ +   D D   +        V+ ACS   + 
Sbjct: 140 RNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAK 199

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC--GCLKEARRVLNDMPSKDVVTWNSMVA 204
            +   IH  V+K G D  +  GN L+  Y K   G +  AR++ + +  KD V++NS+++
Sbjct: 200 GLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMS 259

Query: 205 GYAQNGRFDEALDVCREMESLRIKP-DADTMASLLPSVTNTSP----------------- 246
            YAQ+G  +EA DV R +   ++   +  T++++L +V+++                   
Sbjct: 260 VYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLE 319

Query: 247 ----------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
                             V + +  F ++ NKN+ SW  MIA Y  +   A+A++L+  M
Sbjct: 320 DDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAM 379

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE-RKKLQPNLRLENALVDMYAKCGS 349
              G+ PN I+  SVL AC       +G      ++ R  ++P L     +VD+  + G 
Sbjct: 380 IDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGF 439

Query: 350 LTEARTVFDQMRCQ-DVVSWTSMISA 374
           L +A  +  +M+ + D + W+S+++A
Sbjct: 440 LQKAYDLIQKMKMEPDSIIWSSLLAA 465



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 106/194 (54%), Gaps = 11/194 (5%)

Query: 233 TMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
           +++ LL +  +T  +N+ ++   ++  D  ++ SWN +IA  A +   AEA+  +  M  
Sbjct: 12  SVSRLLHTERHTERQNLTTLFNRYV--DKTDVFSWNSVIADLARSGDSAEALRAFSSMRK 69

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
             + P   S    + AC  L  +  G++ H+       Q ++ + +AL+ MY+ CG L +
Sbjct: 70  LSLYPTRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLED 129

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM------SGLCPDSIAFVSV 406
           AR VFD++  +++VSWTSMI  Y ++G   DAV+LF  +L+      + +  DS+  VSV
Sbjct: 130 ARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSV 189

Query: 407 LSACSHA---GLLE 417
           +SACS     GL E
Sbjct: 190 ISACSRVAAKGLTE 203



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 140/284 (49%), Gaps = 27/284 (9%)

Query: 53  QIIINQHLHSNPSIGLKLMRTY--GACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYL 110
             +I +      S+G  L+  Y  G  G +   R +FD+I +K+ V +N ++  Y  + +
Sbjct: 207 SFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGM 266

Query: 111 YYDALHVYKNM---SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
             +A  V++ +    V  F+  C T   VL A S S +L +G  IH  V+++GL+ ++  
Sbjct: 267 SNEAFDVFRRLIKEKVVTFN--CITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIV 324

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           G  ++ MY KCG ++ AR   + M +K+V +W +M+AGY  +G   +AL++   M    +
Sbjct: 325 GTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGV 384

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLVSWNVMIAVYANNSMPAE 282
           +P+  T  S+L + ++    +V      F  +  +      L  +  M+ +        +
Sbjct: 385 RPNYITFVSVLAACSHAGLHDV--GWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQK 442

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           A DL  +M+   +EP++I  +S+L AC          +IH+ VE
Sbjct: 443 AYDLIQKMK---MEPDSIIWSSLLAAC----------RIHKNVE 473


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 182/564 (32%), Positives = 290/564 (51%), Gaps = 70/564 (12%)

Query: 64  PSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV 123
           P + LK ++ Y   G +   RH+FD+I   ++  + +LI +   +    +A+  Y +   
Sbjct: 11  PHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRH 70

Query: 124 HG-FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
               +PD      V KAC+    ++   ++H   ++ G   ++  GN L+ MYGKC C +
Sbjct: 71  KNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSE 130

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
            AR V   MP +DV++W SM + Y   G   EAL   R+M     +P++ T++S+LP+ T
Sbjct: 131 GARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACT 190

Query: 243 -----------------NTSPENV-------------LSVKEMFLKLDN---KNLVSWNV 269
                            N    NV             LS+++  L  D+   ++ VSWNV
Sbjct: 191 DLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNV 250

Query: 270 MIAVY-----------------------------------ANNSMPAEAVDLYLQMEVHG 294
           +I  Y                                     N    +A+++  +M+  G
Sbjct: 251 LITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSG 310

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
            +PN I++ SVLPAC +L +L  G++IH Y+ R     +L    ALV MYAKCG L  +R
Sbjct: 311 FKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSR 370

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            VF  M  +D VSW +MI A  M G G +A+ LF +M+ SG+ P+S+ F  VLS CSH+ 
Sbjct: 371 RVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSR 430

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
           L++EG   F  M+  + + P  +H +C+VD+L RAG++EEAY+ IK+MP+EP    WG+L
Sbjct: 431 LVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGAL 490

Query: 475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534
           +  C +Y N+++G +AA+ +F +  +  G YVLLSNI   A  W +    RK M  +G+ 
Sbjct: 491 LGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVT 550

Query: 535 KMPGAS-VEMNDQVQIIALPLRSS 557
           K PG S +++ ++V    +  +S+
Sbjct: 551 KNPGCSWIQVRNRVHTFVVGDKSN 574



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 187/436 (42%), Gaps = 81/436 (18%)

Query: 9   RHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGL 68
           RH +  +P + L+LS         AC  +     D+   K++H +  I     S+  +G 
Sbjct: 69  RHKNCVEPDKLLLLSV------AKACASL----RDVMNAKRVH-EDAIRFGFCSDVLLGN 117

Query: 69  KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
            L+  YG C      R VF+ +  ++V+ +  +   YVN  L  +AL  ++ M ++G  P
Sbjct: 118 ALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERP 177

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           +  T   +L AC+    L  G ++H  VV+ G+  N+F  + LV MY  C  +++A+ V 
Sbjct: 178 NSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVF 237

Query: 189 NDMPSKDVVTWNSMVAGY-----------------------------------AQNGRFD 213
           + M  +D V+WN ++  Y                                    QNGR +
Sbjct: 238 DSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTE 297

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTN-----------------------TSPENVL 250
           +AL+V   M++   KP+  T+ S+LP+ TN                       T+   ++
Sbjct: 298 KALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALV 357

Query: 251 SV----------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
            +          + +F  +  ++ VSWN MI   + +    EA+ L+ +M   G+ PN++
Sbjct: 358 FMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSV 417

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           +   VL  C     +  G  I   + R   ++P+    + +VD+ ++ G L EA     +
Sbjct: 418 TFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKK 477

Query: 360 MRCQDVV-SWTSMISA 374
           M  +    +W +++  
Sbjct: 478 MPIEPTAGAWGALLGG 493



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           L P+L L+   + +Y+  G L  AR +FD++   D+ +WT +ISA    G+  +A+  ++
Sbjct: 9   LPPHLALK--FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYN 66

Query: 390 KMLMSGLC-PDSIAFVSVLSACS 411
                    PD +  +SV  AC+
Sbjct: 67  DFRHKNCVEPDKLLLLSVAKACA 89


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 167/452 (36%), Positives = 261/452 (57%), Gaps = 12/452 (2%)

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF-DPDCYTYPCVLKACSGSNSLLVGLQI 152
           +   FN L+R Y  +   ++++ V+  M   GF  PD +++  V+KA     SL  G Q+
Sbjct: 69  DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 128

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           HC  +K GL+ +LF G  L+ MYG CGC++ AR+V ++M   ++V WN+++    +    
Sbjct: 129 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDV 188

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIA 272
             A ++    + + ++        L   +     E   S K +F ++ +++ VSW+ MI 
Sbjct: 189 AGAREI---FDKMLVRNHTSWNVMLAGYIKAGELE---SAKRIFSEMPHRDDVSWSTMIV 242

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
             A+N    E+   + +++  G+ PN +S+  VL AC    +   G+ +H +VE+     
Sbjct: 243 GIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSW 302

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQM---RCQDVVSWTSMISAYGMSGQGYDAVALFS 389
            + + NAL+DMY++CG++  AR VF+ M   RC  +VSWTSMI+   M GQG +AV LF+
Sbjct: 303 IVSVNNALIDMYSRCGNVPMARLVFEGMQEKRC--IVSWTSMIAGLAMHGQGEEAVRLFN 360

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           +M   G+ PD I+F+S+L ACSHAGL+EEG  YF  M   Y + P IEH+ C+VDL GR+
Sbjct: 361 EMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRS 420

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           GK+++AYD I QMP+ P   +W +L+ AC  + N+++       +  L PN SG  VLLS
Sbjct: 421 GKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLS 480

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           N YA AG+W DV  +RK M  + IKK    S+
Sbjct: 481 NAYATAGKWKDVASIRKSMIVQRIKKTTAWSL 512



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 169/407 (41%), Gaps = 78/407 (19%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
           ++ +  ++T  ++H Q +    L S+  +G  L+  YG CG +   R VFDE+   N+V 
Sbjct: 116 VENFRSLRTGFQMHCQAL-KHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVA 174

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +N +I +         A  ++  M V                                  
Sbjct: 175 WNAVITACFRGNDVAGAREIFDKMLVR--------------------------------- 201

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
                 N  + N ++A Y K G L+ A+R+ ++MP +D V+W++M+ G A NG F+E+  
Sbjct: 202 ------NHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFL 255

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSP------------------------------- 246
             RE++   + P+  ++  +L + + +                                 
Sbjct: 256 YFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYS 315

Query: 247 --ENVLSVKEMFLKLDNKN-LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
              NV   + +F  +  K  +VSW  MIA  A +    EAV L+ +M  +G+ P+ IS  
Sbjct: 316 RCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFI 375

Query: 304 SVLPACGDLSALLLGRKIHRYVER-KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
           S+L AC     +  G      ++R   ++P +     +VD+Y + G L +A     QM  
Sbjct: 376 SLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPI 435

Query: 363 -QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
               + W +++ A   S  G   +A   K  ++ L P++   + +LS
Sbjct: 436 PPTAIVWRTLLGA--CSSHGNIELAEQVKQRLNELDPNNSGDLVLLS 480



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 156/336 (46%), Gaps = 20/336 (5%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   +++  ++++  H   N      ++  Y   G++   + +F E+ +++ V ++ +I
Sbjct: 187 DVAGAREIFDKMLVRNHTSWNV-----MLAGYIKAGELESAKRIFSEMPHRDDVSWSTMI 241

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
               +N  + ++   ++ +   G  P+  +   VL ACS S S   G  +H  V K G  
Sbjct: 242 VGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYS 301

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD-VVTWNSMVAGYAQNGRFDEALDVCRE 221
           + +   N L+ MY +CG +  AR V   M  K  +V+W SM+AG A +G+ +EA+ +  E
Sbjct: 302 WIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNE 361

Query: 222 MESLRIKPDADTMASLLPSVTNT----SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
           M +  + PD  +  SLL + ++       E+  S  +    ++ + +  +  M+ +Y  +
Sbjct: 362 MTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPE-IEHYGCMVDLYGRS 420

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
               +A D   QM    I P AI   ++L AC     + L  ++ + +   +L PN   +
Sbjct: 421 GKLQKAYDFICQMP---IPPTAIVWRTLLGACSSHGNIELAEQVKQRL--NELDPNNSGD 475

Query: 338 NALV-DMYAKCGSLTEARTVFDQM---RCQDVVSWT 369
             L+ + YA  G   +  ++   M   R +   +W+
Sbjct: 476 LVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWS 511


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 182/555 (32%), Positives = 293/555 (52%), Gaps = 41/555 (7%)

Query: 33  ACNDILDKYPDIKTLK---KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDE 89
           ACN  L    D+  L+   ++H+ + +      +  IG  L+  Y  CG +   + VFD 
Sbjct: 116 ACNAALVACADLGALRAGEQVHS-LAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDR 174

Query: 90  ITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG 149
           + + +VV +  LI ++  N  +  A      M   G  P+ +T   +L AC      ++G
Sbjct: 175 MDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC----PRVLG 230

Query: 150 LQIHCSVV-KVGL-DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA 207
            QIH  ++ K+GL   ++++   L+  Y + G  K A+ V + +  K+VV+W SM+  Y 
Sbjct: 231 QQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYI 290

Query: 208 QNGRFDEALDVCREMESLRIKPDADTMASLLPS-------------------VTNTSPEN 248
           ++GR +EAL V  +M S  + P+   ++ +L +                   +T+    N
Sbjct: 291 RDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSN 350

Query: 249 VL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297
            L            ++ M  K++N +LVSW   I+    N    +A+ L  QM   G  P
Sbjct: 351 ALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTP 410

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           N  + +SVL +C D+++L  G + H    +      +   NAL++MY+KCG +  AR  F
Sbjct: 411 NGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAF 470

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           D M   DV SW S+I  +   G    A+ +FSKM  +G+ PD   F+ VL  C+H+G++E
Sbjct: 471 DVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVE 530

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           EG  +F++M +QY   P   H+AC++D+LGR G+ +EA  +I  MP EP+  IW +L+A+
Sbjct: 531 EGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLAS 590

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
           C L+ N+DIG LAAD +  L+   S  YVL+SNIYA  G W D ++VR+ M+  G+KK  
Sbjct: 591 CKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDA 650

Query: 538 GAS-VEMNDQVQIIA 551
           G S +E+N++V   A
Sbjct: 651 GCSWIEINNEVHTFA 665



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 188/376 (50%), Gaps = 34/376 (9%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G++ D   +FD +  KNVV +  ++  Y  N     AL ++ +M   G  P+ +     L
Sbjct: 62  GRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAAL 121

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
            AC+   +L  G Q+H   V+ G   + + G+ L+ MY +CG L  A+ V + M S DVV
Sbjct: 122 VACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVV 181

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL---PSVTNTS--------- 245
            + S+++ + +NG F+ A +   +M    +KP+  TM ++L   P V             
Sbjct: 182 GYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKI 241

Query: 246 ---PENVLS----------------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
               ++V S                 K +F  L  KN+VSW  M+ +Y  +    EA+ +
Sbjct: 242 GLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQV 301

Query: 287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
           +  M   G++PN  +++ VL ACG +    LGR++H    +  L  ++R+ NAL+ MY +
Sbjct: 302 FGDMISEGVDPNEFALSIVLGACGSIG---LGRQLHCSAIKHDLITDIRVSNALLSMYGR 358

Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
            G + E   + +++   D+VSWT+ ISA   +G G  A+AL  +M   G  P+  AF SV
Sbjct: 359 TGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSV 418

Query: 407 LSACSHAGLLEEGRYY 422
           LS+C+    L++G  +
Sbjct: 419 LSSCADVASLDQGMQF 434



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 172/371 (46%), Gaps = 46/371 (12%)

Query: 177 KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV------------------ 218
           K G L +A  + + MP K+VV W S+++GY +NGR + AL +                  
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 219 ----CREMESLRIKPDADTMASLLPSVTNTSPENVL-----------SVKEMFLKLDNKN 263
               C ++ +LR      ++A       +    + L           + KE+F ++D+ +
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR 323
           +V +  +I+ +  N     A +  +QM   G++PN  ++ ++L AC      +LG++IH 
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC----PRVLGQQIHG 235

Query: 324 YVERK--KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
           Y+ +K      ++    AL+D Y++ G    A+ VFD + C++VVSW SM+  Y   G+ 
Sbjct: 236 YLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRL 295

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
            +A+ +F  M+  G+ P+  A   VL AC   GL   GR        ++ L+  I     
Sbjct: 296 EEALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GR-QLHCSAIKHDLITDIRVSNA 351

Query: 442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL--YSNMDIGILAADHIFHLAP 499
           L+ + GR G VEE   ++ ++   P+   W + ++A     +    I +L   H     P
Sbjct: 352 LLSMYGRTGLVEELEAMLNKIE-NPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTP 410

Query: 500 NQSGYYVLLSN 510
           N   +  +LS+
Sbjct: 411 NGYAFSSVLSS 421



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 90/180 (50%), Gaps = 4/180 (2%)

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
           P++ LE   ++   K G L +A  +FD+M  ++VV+WTS++S Y  +G+   A+A+F+ M
Sbjct: 46  PDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADM 105

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
           + SG+ P+  A  + L AC+  G L  G     +   +          +CL+++  R G 
Sbjct: 106 VESGVAPNDFACNAALVACADLGALRAGEQVHSLAV-RAGFAGDAWIGSCLIEMYSRCGS 164

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH--LAPNQSGYYVLLS 509
           +  A ++  +M   P+   + SL++A C     ++   A   +    L PN+     +L+
Sbjct: 165 LPAAKEVFDRMD-SPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILT 223


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 186/580 (32%), Positives = 312/580 (53%), Gaps = 48/580 (8%)

Query: 7   LCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSI 66
           +CRH      +      T  TLLSG        ++  +  + ++H  ++      S   +
Sbjct: 130 MCRHGMVPDHI------TLATLLSG------FTEFESVNEVAQVHGHVV-KVGYDSTLMV 176

Query: 67  GLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF 126
              L+ +Y     +    H+F  +  K+ V FN L+  Y      +DA++++  M   GF
Sbjct: 177 CNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGF 236

Query: 127 DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR 186
            P  +T+  VL A    + +  G Q+H  VVK    +N+F  N L+  Y K   + EAR+
Sbjct: 237 RPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARK 296

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT-- 244
           +  +MP  D +++N ++   A NGR +E+L++ RE++  R        A+LL    N+  
Sbjct: 297 LFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLN 356

Query: 245 ---------------SPENVL---SVKEMFLKLD-------------NKNLVSWNVMIAV 273
                          +   VL   S+ +M+ K D             +++ V W  +I+ 
Sbjct: 357 LEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISG 416

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           Y    +  + + L+++M    I  ++ + AS+L AC +L++L LG+++H  + R     N
Sbjct: 417 YVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSN 476

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
           +   +ALVDMYAKCGS+ EA  +F +M  ++ VSW ++ISAY  +G G  A+  F +M+ 
Sbjct: 477 VFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIH 536

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           SGL P+S++F+S+L ACSH GL+EEG  YF  MT+ YKL PR EH+A +VD+L R+G+ +
Sbjct: 537 SGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFD 596

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP-NQSGYYVLLSNIY 512
           EA  L+ +MP EP+E +W S++ +C ++ N ++ I AAD +F++     +  YV +SNIY
Sbjct: 597 EAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIY 656

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIA 551
           A AG W  V +V+K +  +GI+K+P  S VE+  +  + +
Sbjct: 657 AAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFS 696



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/501 (24%), Positives = 227/501 (45%), Gaps = 55/501 (10%)

Query: 52  AQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLY 111
           A+ + ++  H N      ++  Y   G +   R +FD +  ++VV + +LI  Y  +  +
Sbjct: 61  ARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRF 120

Query: 112 YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGL 171
            +A +++ +M  HG  PD  T   +L   +   S+    Q+H  VVKVG D  L   N L
Sbjct: 121 LEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSL 180

Query: 172 VAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA 231
           +  Y K   L  A  +   M  KD VT+N+++ GY++ G   +A+++  +M+ L  +P  
Sbjct: 181 LDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSE 240

Query: 232 DTMASLLPS---------------------------VTN------TSPENVLSVKEMFLK 258
            T A++L +                           V N      +  + ++  +++F +
Sbjct: 241 FTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYE 300

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +   + +S+NV+I   A N    E+++L+ +++    +      A++L    +   L +G
Sbjct: 301 MPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMG 360

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           R+IH           + + N+LVDMYAKC    EA  +F  +  Q  V WT++IS Y   
Sbjct: 361 RQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQK 420

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           G   D + LF +M  + +  DS  + S+L AC++   L  G+          +L  RI  
Sbjct: 421 GLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGK----------QLHSRIIR 470

Query: 439 FAC---------LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
             C         LVD+  + G ++EA  + ++MP+  N   W +L++A     +    + 
Sbjct: 471 SGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVR-NSVSWNALISAYAQNGDGGHALR 529

Query: 490 AADHIFH--LAPNQSGYYVLL 508
           + + + H  L PN   +  +L
Sbjct: 530 SFEQMIHSGLQPNSVSFLSIL 550



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 154/332 (46%), Gaps = 40/332 (12%)

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
            +  S++K G D N    N  V  + + G L  AR++ ++MP K+V++ N+M+ GY ++G
Sbjct: 28  HVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSG 87

Query: 211 RFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVM 270
                                                N+ + + +F  +  +++V+W ++
Sbjct: 88  -------------------------------------NLSTARSLFDSMVQRSVVTWTML 110

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
           I  YA ++   EA +L+  M  HG+ P+ I++A++L    +  ++    ++H +V +   
Sbjct: 111 IGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGY 170

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
              L + N+L+D Y K  SL  A  +F  M  +D V++ ++++ Y   G  +DA+ LF K
Sbjct: 171 DSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFK 230

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450
           M   G  P    F +VL+A      +E G+     +  +   V  +     L+D   +  
Sbjct: 231 MQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVV-KCNFVWNVFVANALLDFYSKHD 289

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           ++ EA  L  +MP    + I  +++  CC ++
Sbjct: 290 RIVEARKLFYEMP--EVDGISYNVLITCCAWN 319


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 183/544 (33%), Positives = 293/544 (53%), Gaps = 38/544 (6%)

Query: 28  LLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVF 87
           +L G A +  ++K   + T+       +I   L S   +G  ++  Y     + D + VF
Sbjct: 199 VLGGLAADGAVEKGVQVHTM-------VIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVF 251

Query: 88  DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLL 147
           D + N+N V +N +I  +V N L  +A  ++  M + G       +  V+K C+    + 
Sbjct: 252 DSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMS 311

Query: 148 VGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS-KDVVTWNSMVAGY 206
              Q+HC V+K G D++L     L+  Y KC  + +A ++   M   ++VV+W ++++GY
Sbjct: 312 FAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGY 371

Query: 207 AQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP------------ENVLSV-- 252
            QNGR D A+++  +M    ++P+  T +++L +    SP            EN  SV  
Sbjct: 372 VQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQIHALVVKTNYENSPSVGT 431

Query: 253 ---------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297
                           ++F  +D K++V+W+ M++ YA       AV ++LQ+   G+EP
Sbjct: 432 ALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEP 491

Query: 298 NAISVASVLPACGDLSALL-LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTV 356
           N  + +SVL AC   +A +  G++ H    +      L + +ALV MYAK G++  A  V
Sbjct: 492 NEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEV 551

Query: 357 FDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL 416
           F +   +D+VSW SMIS Y   G G  ++ +F +M    L  D I F+ V+SAC+HAGL+
Sbjct: 552 FKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLV 611

Query: 417 EEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
            EG+ YF +M + Y +VP +EH++C+VDL  RAG +E+A DLI +MP      IW +L+A
Sbjct: 612 NEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLA 671

Query: 477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKM 536
           AC ++ N+ +G LAA+ +  L P  S  YVLLSNIYA AG W +  +VRK M+ K +KK 
Sbjct: 672 ACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKE 731

Query: 537 PGAS 540
            G S
Sbjct: 732 AGYS 735



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 224/465 (48%), Gaps = 42/465 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H Q I    +  + S+G  L+  Y     + D   VFDE+  KNVV +  L+  Y  
Sbjct: 112 KQVHCQCIKCGFVE-DVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQ 170

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N L   AL ++  M + G  P+ +T+  VL   +   ++  G+Q+H  V+K GLD  +F 
Sbjct: 171 NGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFV 230

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           GN +V MY K   + +A+ V + M +++ V+WNSM+AG+  NG   EA ++   M    +
Sbjct: 231 GNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGV 290

Query: 228 KPDADTMASLLP----------------SVTNTSPENVLSVKEMFL-------KLDN--- 261
           K      A+++                  V     +  L++K   +       ++D+   
Sbjct: 291 KLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFK 350

Query: 262 --------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
                   +N+VSW  +I+ Y  N     A++L+ QM   G+ PN  + +++L A   +S
Sbjct: 351 LFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVS 410

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
                 +IH  V +   + +  +  AL D Y+K G   EA  +F+ +  +D+V+W++M+S
Sbjct: 411 P----SQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLS 466

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH-AGLLEEGRYYFKIMTEQYKL 432
            Y   G    AV +F ++   G+ P+   F SVL+AC+     +E+G+  F   + +   
Sbjct: 467 GYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGK-QFHSCSIKSGF 525

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
              +   + LV +  + G +E A ++ K+  ++ +   W S+++ 
Sbjct: 526 SNALCVSSALVTMYAKRGNIESANEVFKRQ-VDRDLVSWNSMISG 569



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 222/460 (48%), Gaps = 65/460 (14%)

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
           ++ +FDE   + +   N L+  +  N    +AL+++  +   G   D  +  CVLK C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
               +VG Q+HC  +K G   ++  G  LV MY K   +++  RV ++M  K+VV+W S+
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP----------------------- 239
           +AGY QNG  ++AL +  +M+   IKP+  T A++L                        
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 240 --------SVTNTSPENVL--SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
                   S+ N   ++++    K +F  ++N+N VSWN MIA +  N +  EA +L+ +
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M + G++      A+V+  C ++  +   +++H  V +     +L ++ AL+  Y+KC  
Sbjct: 285 MRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSE 344

Query: 350 LTEARTVFDQMR-CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
           + +A  +F  M   Q+VVSWT++IS Y  +G+   A+ LF +M   G+ P+   + ++L+
Sbjct: 345 IDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILT 404

Query: 409 ACS-------HAGLLEEGRY-------------YFKI--MTEQYKLVPRIEH-----FAC 441
           A +       HA L+ +  Y             Y KI    E  K+   I+      ++ 
Sbjct: 405 ANAAVSPSQIHA-LVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSA 463

Query: 442 LVDLLGRAGKVEEAYDLIKQMP---MEPNERIWGSLVAAC 478
           ++    + G +E A  +  Q+    +EPNE  + S++ AC
Sbjct: 464 MLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNAC 503


>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 531

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 168/498 (33%), Positives = 280/498 (56%), Gaps = 46/498 (9%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
           LH+   +   L+  YGA G+    R +FDE+ N+++V    + R++  +     AL +++
Sbjct: 42  LHAGAHLPTALLSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAVSGQAAQALDLFQ 101

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLV----GLQIHCSVVKVGLDYNLFNGNGLVAMY 175
           +M   GF PD      VL AC G+ S       G  +H  +V  G++ ++F    L+ +Y
Sbjct: 102 DMIADGFMPDNVALAVVLAACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIRVY 161

Query: 176 GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA 235
           G+ G +  ARRV + MP+K  + WN+MV  Y +N                          
Sbjct: 162 GERGEMTVARRVFDSMPTKSTIAWNTMVHQYVRN-------------------------- 195

Query: 236 SLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM---EV 292
                      +++ +   +FL +  +++VSWN +IA Y       EA+ L+ QM     
Sbjct: 196 -----------KDIEAAYRLFLAMPRRDVVSWNTVIAGYCLVGRCKEALGLFRQMVSPSS 244

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
             + PN  ++++VL AC     L  G  +H Y+++ ++  N  L+  L+DMYAKCGS+ +
Sbjct: 245 CTVHPNGPTMSTVLSACAGAGCLETGIWVHLYIDKNQMNDNGTLDRCLIDMYAKCGSIDK 304

Query: 353 ARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
           A  VF++   + D+ SWT++I    M G+  D + +FS M  SG+CPD + FV VL+AC+
Sbjct: 305 ALQVFEKAPGKRDLYSWTTVICGLAMHGRANDVLRMFSMMQDSGMCPDDVTFVGVLNACA 364

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIW 471
           H GL++EG ++F  M E+Y++ P+IEH+ C++DLLGR G++ EAY +I+ MPM+PN  IW
Sbjct: 365 HGGLVDEGLHHFYSMQEKYRITPKIEHYGCMIDLLGRVGRLPEAYRMIQTMPMKPNMVIW 424

Query: 472 GSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531
           G+ ++AC ++S++++G +AA  +  L P+     V++S++YAKA  W  + R R+ MNS 
Sbjct: 425 GAFLSACKVHSSVELGEIAAAEVTRLDPDDPWARVMMSSMYAKAQDWSGLARERREMNSL 484

Query: 532 GIKKMPG-ASVEMNDQVQ 548
            +KK PG +SV ++ +V 
Sbjct: 485 QMKKTPGCSSVALDGEVH 502



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 172/401 (42%), Gaps = 74/401 (18%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN------YLYY------- 112
           +  +L+R YG  G+M   R VFD +  K+ + +N ++  YV N      Y  +       
Sbjct: 153 VSTELIRVYGERGEMTVARRVFDSMPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRD 212

Query: 113 ------------------DALHVYKNM------SVHGFDPDCYTYPCVLKACSGSNSLLV 148
                             +AL +++ M      +VH   P+  T   VL AC+G+  L  
Sbjct: 213 VVSWNTVIAGYCLVGRCKEALGLFRQMVSPSSCTVH---PNGPTMSTVLSACAGAGCLET 269

Query: 149 GLQIHCSVVKVGLDYNLFNGNG-----LVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSM 202
           G+ +H     + +D N  N NG     L+ MY KCG + +A +V    P K D+ +W ++
Sbjct: 270 GIWVH-----LYIDKNQMNDNGTLDRCLIDMYAKCGSIDKALQVFEKAPGKRDLYSWTTV 324

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS-----VTNTSPENVLSVKEMFL 257
           + G A +GR ++ L +   M+   + PD  T   +L +     + +    +  S++E + 
Sbjct: 325 ICGLAMHGRANDVLRMFSMMQDSGMCPDDVTFVGVLNACAHGGLVDEGLHHFYSMQEKY- 383

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
           ++  K +  +  MI +        EA   Y  ++   ++PN +   + L AC   S++ L
Sbjct: 384 RITPK-IEHYGCMIDLLGRVGRLPEA---YRMIQTMPMKPNMVIWGAFLSACKVHSSVEL 439

Query: 318 GRKIHRYVERKKLQPNLRLENALV-DMYAKC---GSLTEARTVFDQMRCQDVVSWTSMIS 373
           G      V R  L P+      ++  MYAK      L   R   + ++ +     T   S
Sbjct: 440 GEIAAAEVTR--LDPDDPWARVMMSSMYAKAQDWSGLARERREMNSLQMKK----TPGCS 493

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
           +  + G+ ++ VA  ++     LC +  + +  + A SH G
Sbjct: 494 SVALDGEVHEFVAGGNQ---HPLCAEICSVLETVEAQSHTG 531


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 165/448 (36%), Positives = 259/448 (57%), Gaps = 32/448 (7%)

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G  PD +T+P ++KACS       G++IH  VVK G    +F  N L+ MYGKC   + +
Sbjct: 5   GIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELS 64

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV-TN 243
           R+V ++MP K+ V+W++++    Q+ R  E   + R+M S   +P    + + +  V ++
Sbjct: 65  RQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMACVRSH 124

Query: 244 TSPENVLSV-----------------------------KEMFLKLDNKNLVSWNVMIAVY 274
              ++V  V                             +++F  + +K+LV+W   I  Y
Sbjct: 125 EEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAY 184

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
               MP EA+ L  QM + GI P+AI++  V+ AC  L++  L   +H  +        L
Sbjct: 185 VKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQL 244

Query: 335 -RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             +E AL+D+Y KCGSLT AR VFD M+ +++++W++MIS YGM G G +A+ LF +M  
Sbjct: 245 LAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMKA 304

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           S + PD I FVS+LSACSH+GL+ EG   F  M   + + PR EH+AC+VD+LGRAGK++
Sbjct: 305 S-VKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLD 363

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA D I++MP+ PN  +WG+L+ AC ++ N+D+  + A  +F L P+ +G YV+L NIY 
Sbjct: 364 EACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYT 423

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGASV 541
             G+  +   +R  M ++G+KK+ G SV
Sbjct: 424 LTGKRKEADSIRTLMKNRGVKKIAGYSV 451



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 165/362 (45%), Gaps = 41/362 (11%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           ++H Q ++     S   I   L+  YG C +   +R VFDE+ +KN V ++ +I + + +
Sbjct: 31  RIH-QDVVKFGYQSQVFISNSLITMYGKCDKYELSRQVFDEMPDKNAVSWSAIIGACLQD 89

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
               +   +++ M   G  P   +   +L A +   S      ++  VV+ GLD++    
Sbjct: 90  DRCKEGFSLFRQMLSEGSRP---SRGAILNAMACVRSHEEADDVYRVVVENGLDFDQSVQ 146

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           +    M+ +CG ++ AR++ + + SKD+VTW + +  Y +     EAL + ++M    I 
Sbjct: 147 SAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIF 206

Query: 229 PDADTMASLLPSVTNTSP-----------------ENVLSV-----------------KE 254
           PDA T+  ++ + +  +                    +L+V                 ++
Sbjct: 207 PDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARK 266

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F  +  +N+++W+ MI+ Y  +    EA++L+ QM+   ++P+ I+  S+L AC     
Sbjct: 267 VFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMKA-SVKPDHITFVSILSACSHSGL 325

Query: 315 LLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMI 372
           +  G +    + R   + P       +VD+  + G L EA    ++M  + +   W +++
Sbjct: 326 VAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALL 385

Query: 373 SA 374
            A
Sbjct: 386 GA 387


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 167/452 (36%), Positives = 261/452 (57%), Gaps = 12/452 (2%)

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF-DPDCYTYPCVLKACSGSNSLLVGLQI 152
           +   FN L+R Y  +   ++++ V+  M   GF  PD +++  V+KA     SL  G Q+
Sbjct: 61  DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 120

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           HC  +K GL+ +LF G  L+ MYG CGC++ AR+V ++M   ++V WN+++    +    
Sbjct: 121 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDV 180

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIA 272
             A ++    + + ++        L   +     E   S K +F ++ +++ VSW+ MI 
Sbjct: 181 AGAREI---FDKMLVRNHTSWNVMLAGYIKAGELE---SAKRIFSEMPHRDDVSWSTMIV 234

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
             A+N    E+   + +++  G+ PN +S+  VL AC    +   G+ +H +VE+     
Sbjct: 235 GIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSW 294

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQM---RCQDVVSWTSMISAYGMSGQGYDAVALFS 389
            + + NAL+DMY++CG++  AR VF+ M   RC  +VSWTSMI+   M GQG +AV LF+
Sbjct: 295 IVSVNNALIDMYSRCGNVPMARLVFEGMQEKRC--IVSWTSMIAGLAMHGQGEEAVRLFN 352

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           +M   G+ PD I+F+S+L ACSHAGL+EEG  YF  M   Y + P IEH+ C+VDL GR+
Sbjct: 353 EMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRS 412

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           GK+++AYD I QMP+ P   +W +L+ AC  + N+++       +  L PN SG  VLLS
Sbjct: 413 GKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLS 472

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           N YA AG+W DV  +RK M  + IKK    S+
Sbjct: 473 NAYATAGKWKDVASIRKSMIVQRIKKTTAWSL 504



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 169/407 (41%), Gaps = 78/407 (19%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
           ++ +  ++T  ++H Q +    L S+  +G  L+  YG CG +   R VFDE+   N+V 
Sbjct: 108 VENFRSLRTGFQMHCQAL-KHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVA 166

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +N +I +         A  ++  M V                                  
Sbjct: 167 WNAVITACFRGNDVAGAREIFDKMLVR--------------------------------- 193

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
                 N  + N ++A Y K G L+ A+R+ ++MP +D V+W++M+ G A NG F+E+  
Sbjct: 194 ------NHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFL 247

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSP------------------------------- 246
             RE++   + P+  ++  +L + + +                                 
Sbjct: 248 YFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYS 307

Query: 247 --ENVLSVKEMFLKLDNKN-LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
              NV   + +F  +  K  +VSW  MIA  A +    EAV L+ +M  +G+ P+ IS  
Sbjct: 308 RCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFI 367

Query: 304 SVLPACGDLSALLLGRKIHRYVER-KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
           S+L AC     +  G      ++R   ++P +     +VD+Y + G L +A     QM  
Sbjct: 368 SLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPI 427

Query: 363 -QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
               + W +++ A   S  G   +A   K  ++ L P++   + +LS
Sbjct: 428 PPTAIVWRTLLGA--CSSHGNIELAEQVKQRLNELDPNNSGDLVLLS 472



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 156/336 (46%), Gaps = 20/336 (5%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   +++  ++++  H   N      ++  Y   G++   + +F E+ +++ V ++ +I
Sbjct: 179 DVAGAREIFDKMLVRNHTSWNV-----MLAGYIKAGELESAKRIFSEMPHRDDVSWSTMI 233

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
               +N  + ++   ++ +   G  P+  +   VL ACS S S   G  +H  V K G  
Sbjct: 234 VGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYS 293

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD-VVTWNSMVAGYAQNGRFDEALDVCRE 221
           + +   N L+ MY +CG +  AR V   M  K  +V+W SM+AG A +G+ +EA+ +  E
Sbjct: 294 WIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNE 353

Query: 222 MESLRIKPDADTMASLLPSVTNT----SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
           M +  + PD  +  SLL + ++       E+  S  +    ++ + +  +  M+ +Y  +
Sbjct: 354 MTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPE-IEHYGCMVDLYGRS 412

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
               +A D   QM    I P AI   ++L AC     + L  ++ + +   +L PN   +
Sbjct: 413 GKLQKAYDFICQMP---IPPTAIVWRTLLGACSSHGNIELAEQVKQRL--NELDPNNSGD 467

Query: 338 NALV-DMYAKCGSLTEARTVFDQM---RCQDVVSWT 369
             L+ + YA  G   +  ++   M   R +   +W+
Sbjct: 468 LVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWS 503


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 173/515 (33%), Positives = 274/515 (53%), Gaps = 34/515 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  CG   D   VF  I + +VV ++ +I          +A  V+K M   G  P+
Sbjct: 371 LVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPN 430

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +T   ++ A +    L  G  IH  V K G +Y+    N LV MY K G +++  RV  
Sbjct: 431 QFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFE 490

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP--- 246
              ++D+++WN++++G+  N   D  L +  +M +    P+  T  S+L S ++ S    
Sbjct: 491 ATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDL 550

Query: 247 ---------ENVLS---------------------VKEMFLKLDNKNLVSWNVMIAVYAN 276
                    +N L                       + +F +L  ++L +W V++A YA 
Sbjct: 551 GKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQ 610

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           +    +AV  ++QM+  G++PN  ++AS L  C  ++ L  GR++H    +     ++ +
Sbjct: 611 DGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFV 670

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            +ALVDMYAKCG + +A  VFD +  +D VSW ++I  Y   GQG  A+  F  ML  G 
Sbjct: 671 ASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGT 730

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PD + F+ VLSACSH GL+EEG+ +F  +++ Y + P IEH+AC+VD+LGRAGK  E  
Sbjct: 731 VPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVE 790

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
             I++M +  N  IW +++ AC ++ N++ G  AA  +F L P     Y+LLSN++A  G
Sbjct: 791 SFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKG 850

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            W DV  VR  M+++G+KK PG S VE+N QV + 
Sbjct: 851 MWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVF 885



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 142/544 (26%), Positives = 248/544 (45%), Gaps = 74/544 (13%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   K +H Q+I    ++ +  +   L+  Y  CG       VF EI  ++VV +  LI
Sbjct: 143 DLNEGKAIHGQVI-KSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALI 201

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             +V       A++++  M   G + + +TY   LKACS    L  G Q+H   +KVG  
Sbjct: 202 TGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDF 261

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            +LF G+ LV +Y KCG +  A RV   MP ++ V+WN+++ G+AQ G  ++ L++   M
Sbjct: 262 SDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRM 321

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENV------LSVK----------------------- 253
               I     T++++L    N+           L+++                       
Sbjct: 322 TGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLA 381

Query: 254 ----EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
               ++F+++++ ++VSW+ +I          EA +++ +M   G+ PN  ++AS++ A 
Sbjct: 382 GDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAA 441

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
            DL  L  G  IH  V +   + +  + NALV MY K GS+ +   VF+    +D++SW 
Sbjct: 442 TDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWN 501

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS-----------HAGLLE- 417
           +++S +  +      + +F++ML  G  P+   F+S+L +CS           HA +++ 
Sbjct: 502 ALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKN 561

Query: 418 -----------------EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA--GKVEEAYDL 458
                            + R+     T   +L+ R + FA  V + G A  G+ E+A   
Sbjct: 562 SLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKR-DLFAWTVIVAGYAQDGQGEKAVKC 620

Query: 459 IKQMPME---PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS---NIY 512
             QM  E   PNE    S ++ C   + +D G     H   +   QSG   + S   ++Y
Sbjct: 621 FIQMQREGVKPNEFTLASSLSGCSRIATLDSG--RQLHSMAIKAGQSGDMFVASALVDMY 678

Query: 513 AKAG 516
           AK G
Sbjct: 679 AKCG 682



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 183/395 (46%), Gaps = 41/395 (10%)

Query: 21  VLSTQYTLLS-GDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQ 79
           V+  Q+TL S   A  D+ D Y      + +HA  +       + ++   L+  Y   G 
Sbjct: 427 VIPNQFTLASLVSAATDLGDLYYG----ESIHA-CVCKYGFEYDNTVCNALVTMYMKIGS 481

Query: 80  MVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA 139
           + D   VF+  TN++++ +N L+  + +N      L ++  M   GF+P+ YT+  +L++
Sbjct: 482 VQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRS 541

Query: 140 CSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTW 199
           CS  + + +G Q+H  +VK  LD N F G  LV MY K   L++A  + N +  +D+  W
Sbjct: 542 CSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAW 601

Query: 200 NSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN----------- 248
             +VAGYAQ+G+ ++A+    +M+   +KP+  T+AS L   +  +  +           
Sbjct: 602 TVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIK 661

Query: 249 ----------------------VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
                                 V   + +F  L +++ VSWN +I  Y+ +    +A+  
Sbjct: 662 AGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKA 721

Query: 287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER-KKLQPNLRLENALVDMYA 345
           +  M   G  P+ ++   VL AC  +  +  G+K    + +   + P +     +VD+  
Sbjct: 722 FEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILG 781

Query: 346 KCGSLTEARTVFDQMR-CQDVVSWTSMISAYGMSG 379
           + G   E  +  ++M+   +V+ W +++ A  M G
Sbjct: 782 RAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHG 816



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 150/322 (46%), Gaps = 35/322 (10%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           Y  +L+ C+    L  G  IH  V+K G++ +    N LV +Y KCG    A +V  ++P
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT---------- 242
            +DVV+W +++ G+   G    A+++  EM    ++ +  T A+ L + +          
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 243 ------------------------NTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNS 278
                                       E VL+ + +FL +  +N VSWN ++  +A   
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLA-ERVFLCMPKQNAVSWNALLNGFAQMG 309

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
              + ++L+ +M    I  +  ++++VL  C +   L  G+ +H    R   + +  +  
Sbjct: 310 DAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISC 369

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
            LVDMY+KCG   +A  VF ++   DVVSW+++I+     GQ  +A  +F +M  SG+ P
Sbjct: 370 CLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIP 429

Query: 399 DSIAFVSVLSACSHAGLLEEGR 420
           +     S++SA +  G L  G 
Sbjct: 430 NQFTLASLVSAATDLGDLYYGE 451



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 140/299 (46%), Gaps = 11/299 (3%)

Query: 183 EARRVLN--DMPSKDVV-TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
           E +R+    D  SK  +  ++ M+   A  G  +E   +  ++    I PD+    SL+ 
Sbjct: 112 EKKRIWRGLDFDSKGRLRQYSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVN 171

Query: 240 SVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                   N     ++F ++  +++VSW  +I  +      + AV+L+ +M   G+E N 
Sbjct: 172 VYAKCGSANYAC--KVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANE 229

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
            + A+ L AC     L  G+++H    +     +L + +ALVD+YAKCG +  A  VF  
Sbjct: 230 FTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLC 289

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
           M  Q+ VSW ++++ +   G     + LF +M  S +        +VL  C+++G L  G
Sbjct: 290 MPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAG 349

Query: 420 RYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
           +    + +   ++   ++ F   CLVD+  + G   +A  +  ++  +P+   W +++ 
Sbjct: 350 QI---VHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIE-DPDVVSWSAIIT 404


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 170/508 (33%), Positives = 274/508 (53%), Gaps = 33/508 (6%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y   G++ + R VF E+  +NVV +  +I   V      +AL  +  M    
Sbjct: 153 VGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSR 212

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            + D YT+   LKAC+ S +L  G +IH   +K G D + F  N L  MY KCG L+   
Sbjct: 213 VEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGL 272

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT- 244
            +   M  +DVV+W +++    Q G+ + A+     M    + P+  T A+++    N  
Sbjct: 273 TLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLA 332

Query: 245 ---------------------SPENVL-----------SVKEMFLKLDNKNLVSWNVMIA 272
                                S EN +           S   +F ++  +++VSW+ +IA
Sbjct: 333 RIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIA 392

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y      +EA +L   M + G +P   ++ASVL ACG+++ L  G+++H YV    L+ 
Sbjct: 393 GYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEH 452

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
              + +AL++MY KCGS+ EA  +FD     D+VSWT+MI+ Y   G   + + LF K+ 
Sbjct: 453 TAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIP 512

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
             GL PDS+ F+ VLSACSHAGL++ G +YF  M+++Y++ P  EH+ C++DLL RAG++
Sbjct: 513 RVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRL 572

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
            +A  +I+ MP   ++ +W +L+ AC ++ +++ G   A+ I  L PN +G ++ L+NIY
Sbjct: 573 SDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIY 632

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           A  G+W +   +RK M SKG+ K PG S
Sbjct: 633 ASKGKWREAADIRKLMKSKGVIKEPGWS 660



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 143/563 (25%), Positives = 258/563 (45%), Gaps = 83/563 (14%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSI--GLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           D++ L++ +  +  N H  S   +    K ++     G + + R +FD+++ K+ + +  
Sbjct: 26  DLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTT 85

Query: 101 LIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
           LI  YVN     +AL ++KNM V  G   D +      KAC  ++ +  G  +H   VK 
Sbjct: 86  LISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKT 145

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           GL  ++F G+ L+ MY K G + E RRV ++MP ++VV+W +++ G  + G   EAL   
Sbjct: 146 GLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYF 205

Query: 220 REMESLRIKPDADTMASLLPSVTNTSP----------------------ENVLSVK---- 253
            EM   R++ D+ T A  L +  ++                         N L+      
Sbjct: 206 SEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKC 265

Query: 254 -------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
                   +F K+  +++VSW  +I           AV  +++M    + PN  + A+V+
Sbjct: 266 GKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVI 325

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
             C +L+ +  G ++H  +    L  +L +EN+++ MYAKCG LT +  +F +M  +D+V
Sbjct: 326 SGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIV 385

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YY 422
           SW+++I+ Y   G   +A  L S M M G  P   A  SVLSAC +  +LE G+    Y 
Sbjct: 386 SWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYV 445

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA--------------------------- 455
             I  E   +V      + L+++  + G +EEA                           
Sbjct: 446 LSIGLEHTAMV-----LSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGY 500

Query: 456 ----YDLIKQMP---MEPNERIWGSLVAACCLYSNMDIGIL---AADHIFHLAPNQSGYY 505
                DL +++P   + P+   +  +++AC     +D+G     A    + ++P++  Y 
Sbjct: 501 SREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYG 560

Query: 506 VLLSNIYAKAGRWGDVKRVRKFM 528
            ++ ++  +AGR  D + + + M
Sbjct: 561 CMI-DLLCRAGRLSDAEHMIEAM 582



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 161/330 (48%), Gaps = 16/330 (4%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           I+  ++LHA +I++  L ++ S+   +M  Y  CGQ+  +  +F E+T +++V ++ +I 
Sbjct: 334 IEWGEQLHA-LILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIA 392

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            Y       +A  +   M + G  P  +    VL AC     L  G Q+H  V+ +GL++
Sbjct: 393 GYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEH 452

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
                + L+ MY KCG ++EA R+ +   + D+V+W +M+ GYA++G   E +D+  ++ 
Sbjct: 453 TAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIP 512

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS-----WNVMIAVYANNS 278
            + ++PD+ T   +L + ++    ++      F  +  K  +S     +  MI +     
Sbjct: 513 RVGLRPDSVTFIGVLSACSHAGLVDL--GFHYFNAMSKKYQISPSKEHYGCMIDLLCRAG 570

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER-KKLQPNLRLE 337
             ++A  +   M  H    + +  +++L AC     +  GR   R  ER  +L+PN    
Sbjct: 571 RLSDAEHMIEAMPFH---RDDVVWSTLLRACRVHGDVERGR---RTAERILQLEPNCAGT 624

Query: 338 N-ALVDMYAKCGSLTEARTVFDQMRCQDVV 366
           +  L ++YA  G   EA  +   M+ + V+
Sbjct: 625 HITLANIYASKGKWREAADIRKLMKSKGVI 654


>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
 gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
          Length = 655

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 181/523 (34%), Positives = 277/523 (52%), Gaps = 32/523 (6%)

Query: 51  HAQII-INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           H +II  N        +G  L+R YG C  + D    F EI  KN   + +++ +Y  N 
Sbjct: 3   HERIIDANLEQEKETFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQEND 62

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACS--GSNSLLVGLQIHCSVVKVGLDYNLFN 167
           L+  AL ++K         +  TY  VLK+C+  G + L  G +IH   +  G   +L  
Sbjct: 63  LHKKALQLFKKSINEELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVV 122

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY KCG  K A  V   M  K+++++ SM+  Y    +  EA ++ ++M S  I
Sbjct: 123 QNSLIHMYAKCGSFKFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGI 182

Query: 228 KPDADTMASLL---PSVTNTSPENV--------------------------LSVKEMFLK 258
            PD    A+ L   P++      +V                           S K +F  
Sbjct: 183 MPDIYAYAAALAVCPTIREGEAIHVKLGNHERRTPVCSNALVGMYGRFGRIASAKWVFDG 242

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +  K+L S+N MIAV+A     ++A+ LY++ME   +EPN  +  SVL AC  L AL  G
Sbjct: 243 IRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSKLGALTEG 302

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           ++IH+ V+      ++    ALV+MYAKCGS  EAR VF+    ++V +WTS++SAY   
Sbjct: 303 KEIHKKVKGGDQPTDVAYNTALVNMYAKCGSTHEARAVFNDCGLKNVFTWTSLMSAYSQP 362

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           GQ    +  + +M   G+ PD + F ++ +ACSH+GL +EG  YF+ M E + +VP   H
Sbjct: 363 GQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPLQPH 422

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
           + C++DLLGR G++ EA +L++ MP  P+   W  L++AC +Y ++ IG  A   I  L 
Sbjct: 423 YTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRITELN 482

Query: 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           P  SG Y+L+ N+YAKAG+W DV  V+K +  +G+ K PG S+
Sbjct: 483 PPDSGPYLLMGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSM 525



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 142/322 (44%), Gaps = 17/322 (5%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           P I+  + +H ++    H    P     L+  YG  G++   + VFD I  K++  +N +
Sbjct: 197 PTIREGEAIHVKL--GNHERRTPVCSNALVGMYGRFGRIASAKWVFDGIRYKDLASYNNM 254

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           I  +        A+ +Y  M     +P+ +T+  VL ACS   +L  G +IH  V     
Sbjct: 255 IAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSKLGALTEGKEIHKKVKGGDQ 314

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             ++     LV MY KCG   EAR V ND   K+V TW S+++ Y+Q G+    L+  + 
Sbjct: 315 PTDVAYNTALVNMYAKCGSTHEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQR 374

Query: 222 MESLRIKPDADTMASLLPSVTNTS--PENVLSVKEMFLKLDNKNLV----SWNVMIAVYA 275
           M    + PD  T  ++  + +++    E +L  + M    ++  +V     +  MI +  
Sbjct: 375 MNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAM---REDHWIVPLQPHYTCMIDLLG 431

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
                 EA +L   M      P+ ++   +L AC     L +G + ++ +   +L P   
Sbjct: 432 RVGRLREAEELVRTMPY---SPDVVTWTILLSACKVYGDLKIGARAYKRI--TELNPPDS 486

Query: 336 LENALV-DMYAKCGSLTEARTV 356
               L+ +MYAK G   +   V
Sbjct: 487 GPYLLMGNMYAKAGKWADVAEV 508


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 184/516 (35%), Positives = 285/516 (55%), Gaps = 46/516 (8%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+K   ++H+ +  + +L S+  +G  L+  Y  CG++   + VFDE+T ++ V +N LI
Sbjct: 166 DLKLGSQIHSLVYRSNYL-SDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLI 224

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-L 161
             Y  N    +AL ++  M   G +PD  T   V+ AC+  +++  G QIH  VVK    
Sbjct: 225 TCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEF 284

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             +L  GN L+ MY KC  + EAR + + MP + VV+  SMV+GYA+  +          
Sbjct: 285 RNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASK---------- 334

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
                                      V   + MF  +  K++++WN +IA    N    
Sbjct: 335 ---------------------------VKVARYMFSNMMVKDVITWNALIAGCTQNGENE 367

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ------PNLR 335
           EA+ L+  ++   + P   +  ++L AC +L+ L LGR+ H +V +   +       ++ 
Sbjct: 368 EALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVF 427

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           + N+L+DMY KCGS+     VF  M  +D VSW +MI  Y  +G G  A+ +F KML SG
Sbjct: 428 VGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESG 487

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
             PD +  + VL ACSHAGLL+EGRYYF+ MT Q+ L+P  +H+ C+VDLLGRAG +EEA
Sbjct: 488 EAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEA 547

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
            +LI++M M+P+  +WGSL+AAC ++ N+ +G      +  + P  SG YVLLSN+YA+ 
Sbjct: 548 KNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAEN 607

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
             W +V RVRK M  +G+ K PG S +E+  ++ + 
Sbjct: 608 RDWKNVVRVRKLMRQRGVVKQPGCSWIEIQGELNVF 643



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 161/336 (47%), Gaps = 37/336 (11%)

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D   +  +L  C+ S S     ++H  ++K       F  N L+ +YGKCGC+  AR++ 
Sbjct: 18  DSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLF 77

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
           + M  +++ +WNS++  + ++G  D+A+ +  +M      P  D                
Sbjct: 78  DRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKM------PQVDQ--------------- 116

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
                            SWN MI+ +  +    EA+  + QM  HG   N  S  S L A
Sbjct: 117 ----------------CSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSA 160

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  L  L LG +IH  V R     ++ + +ALVDMY+KCG +  A++VFD+M  +  VSW
Sbjct: 161 CAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSW 220

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            S+I+ Y  +G   +A+ +F +M+  G+ PD +   SV+SAC+    ++EG+     + +
Sbjct: 221 NSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVK 280

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM 464
             +    +     L+D+  +  ++ EA  +   MP+
Sbjct: 281 CDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPI 316



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 191/409 (46%), Gaps = 82/409 (20%)

Query: 132 TYPCVLKACSGSNSL----LVGLQIHCSVVKVG-------LDYNLFNGNGLVAMYGKCGC 180
            + C++K+   S +     L+ +   C  V V        L+ N+F+ N ++  + K G 
Sbjct: 41  VHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGF 100

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE----------------------ALDV 218
           L +A  +   MP  D  +WNSM++G+ Q+GRFDE                      AL  
Sbjct: 101 LDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSA 160

Query: 219 CREMESLRIKPDADTM---ASLLPSVTNTSP--------ENVLSVKEMFLKLDNKNLVSW 267
           C  ++ L++     ++   ++ L  V   S           V   + +F ++  ++ VSW
Sbjct: 161 CAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSW 220

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH-RYVE 326
           N +I  Y  N    EA+ ++++M   G+EP+ +++ASV+ AC  +SA+  G++IH R V+
Sbjct: 221 NSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVK 280

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
             + + +L L NAL+DMYAKC  + EAR +FD M  + VVS TSM+S Y  + +   A  
Sbjct: 281 CDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARY 340

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           +FS M++     D I + ++++ C+  G  EE    F+                      
Sbjct: 341 MFSNMMV----KDVITWNALIAGCTQNGENEEALILFR---------------------- 374

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
                      L+K+  + P    +G+L+ AC   +++ +G  A  H+ 
Sbjct: 375 -----------LLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVL 412



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/472 (23%), Positives = 205/472 (43%), Gaps = 80/472 (16%)

Query: 45  KTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           +   ++HA  II     S   I  +L+  YG CG +   R +FD +  +N+  +N +I +
Sbjct: 36  RDTSRVHA-CIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICA 94

Query: 105 YVNNYLYYDALHVYKNMSV-------------------------------HGFDPDCYTY 133
           +  +    DA+H+++ M                                 HGF  + Y++
Sbjct: 95  FTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSF 154

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
              L AC+G   L +G QIH  V +     +++ G+ LV MY KCG ++ A+ V ++M  
Sbjct: 155 GSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTV 214

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP-ENVLSV 252
           +  V+WNS++  Y QNG  DEAL +  EM    ++PD  T+AS++ +    S  +    +
Sbjct: 215 RSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQI 274

Query: 253 KEMFLKLDN--KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
               +K D    +L+  N ++ +YA  +   EA  ++  M +        SV S      
Sbjct: 275 HARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIR-------SVVS------ 321

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
                                     E ++V  YAK   +  AR +F  M  +DV++W +
Sbjct: 322 --------------------------ETSMVSGYAKASKVKVARYMFSNMMVKDVITWNA 355

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE-- 428
           +I+    +G+  +A+ LF  +    + P    F ++L+AC++   L+ GR     + +  
Sbjct: 356 LIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHG 415

Query: 429 ---QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
              QY     +     L+D+  + G VE    + + M +E +   W +++  
Sbjct: 416 FRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHM-LEKDCVSWNAMIVG 466



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 164/357 (45%), Gaps = 32/357 (8%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N +LD Y     + +  A+II +     +      ++  Y    ++   R++F  +  K+
Sbjct: 292 NALLDMYAKCNRINE--ARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKD 349

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
           V+ +N LI     N    +AL +++ +      P  YT+  +L AC+    L +G Q H 
Sbjct: 350 VITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHS 409

Query: 155 SVVKVGL------DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
            V+K G       D ++F GN L+ MY KCG ++   RV   M  KD V+WN+M+ GYAQ
Sbjct: 410 HVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQ 469

Query: 209 NGRFDEALDV-CREMESLRIKPDADTMASLLPSVTNTS--PENVLSVKEMFLKLDNKNLV 265
           NG  ++AL+V C+ +ES    PD  TM  +L + ++     E     + M  +     L 
Sbjct: 470 NGFGNKALEVFCKMLESGE-APDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLK 528

Query: 266 S-WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
             +  M+ +        EA +L  +M    ++P+AI   S+L AC     + LG     Y
Sbjct: 529 DHYTCMVDLLGRAGYLEEAKNLIEEM---SMQPDAIVWGSLLAACKVHRNIQLG----EY 581

Query: 325 VERKKLQPNLRLENA-----LVDMYAKCGSLTEARTVFDQMRCQDVV-----SWTSM 371
           V +K L+ +   EN+     L +MYA+         V   MR + VV     SW  +
Sbjct: 582 VVKKLLEVD--PENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEI 636


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 164/476 (34%), Positives = 283/476 (59%), Gaps = 15/476 (3%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           +   G++ + R +FD++  +NVV +N +I +YV N    +A+ ++  M     + +  ++
Sbjct: 243 FARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMP----EKNSISW 298

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             V+        L    Q+   +       N+     +++ Y +   + +AR++ N +  
Sbjct: 299 TTVINGYVRMGKLDEARQLLNQMPY----RNVAAQTAMISGYVQNKRMDDARQIFNQISI 354

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK 253
           +DVV WN+M+AGY+Q GR DEAL + ++M    +K D  +  +++ S       +  +  
Sbjct: 355 RDVVCWNTMIAGYSQCGRMDEALHLFKQM----VKKDIVSWNTMVASYAQVGQMD--AAI 408

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           ++F ++  KN+VSWN +I+    N    +A+  ++ M   G +P+  + A  L +C  L+
Sbjct: 409 KIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLA 468

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           AL +G+++H+ V +     +L + NAL+ MYAKCGS++ A  +F  +   DVVSW S+I+
Sbjct: 469 ALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIA 528

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
           AY ++G G +A+ LF KM + G+ PD + FV +LSACSH GL+++G   FK M + Y + 
Sbjct: 529 AYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIE 588

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P  EH+AC+VDLLGRAG++EEA+ L++ M +  N  IWG+L+ AC ++ N+++   AA+ 
Sbjct: 589 PLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEK 648

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           +    P+++  YVLLSN+ A+AGRW +V RVR+ M  KG +K PG S +E+ ++V 
Sbjct: 649 LLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVH 704



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 133/547 (24%), Positives = 233/547 (42%), Gaps = 109/547 (19%)

Query: 54  IIINQHL-HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYY 112
           I + QH+ H N      ++  +   G++ D R +FD +  +N+V +N +I +Y++N    
Sbjct: 35  IKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVE 94

Query: 113 DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV 172
           +A  ++  M       D Y++  ++  C   N  L   +   +++     +N    N +V
Sbjct: 95  EARQLFDKMPTR----DLYSWTLMI-TCYTRNGELAKARNLFNLLP--YKWNPVCCNAMV 147

Query: 173 AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM---------- 222
           A Y K     EARR+ + MP+KD+V+WNSM+ GY +NG     L    EM          
Sbjct: 148 AGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNL 207

Query: 223 ---------------ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSW 267
                          E     P+ +T++ +           +   + +F ++  +N+V+W
Sbjct: 208 MVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAW 267

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK------- 320
           N MIA Y  N    EA+ L+++M     E N+IS  +V+     +  L   R+       
Sbjct: 268 NAMIAAYVQNCHVDEAISLFMEMP----EKNSISWTTVINGYVRMGKLDEARQLLNQMPY 323

Query: 321 ---------IHRYVERKKL--------QPNLR---LENALVDMYAKCGSLTEARTVFDQM 360
                    I  YV+ K++        Q ++R     N ++  Y++CG + EA  +F QM
Sbjct: 324 RNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQM 383

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKM----------LMSGLC------------- 397
             +D+VSW +M+++Y   GQ   A+ +F +M          L+SGL              
Sbjct: 384 VKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFM 443

Query: 398 --------PDSIAFVSVLSACSHAGLLEEGRYYFK-IMTEQYKLVPRIEHFACLVDLLGR 448
                   PD   F   LS+C+H   L+ G+   + +M   Y     + +   L+ +  +
Sbjct: 444 LMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSN--ALITMYAK 501

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH------LAPNQS 502
            G +  A  L K +    +   W SL+AA  L  N       A  +FH      +AP++ 
Sbjct: 502 CGSISSAELLFKDID-HFDVVSWNSLIAAYALNGNGR----EALKLFHKMEVEGVAPDEV 556

Query: 503 GYYVLLS 509
            +  +LS
Sbjct: 557 TFVGILS 563



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 94/174 (54%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++ +Y   GQM     +F+E+  KN+V +N LI     N  Y DAL  +  M   G  PD
Sbjct: 394 MVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPD 453

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T+ C L +C+   +L VG Q+H  V+K G   +LF  N L+ MY KCG +  A  +  
Sbjct: 454 QSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFK 513

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           D+   DVV+WNS++A YA NG   EAL +  +ME   + PD  T   +L + ++
Sbjct: 514 DIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSH 567



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 161/385 (41%), Gaps = 62/385 (16%)

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
           +F  N  +   GK G + EA +V   M  K+ VT NSM++ +A+NGR  +A  +   M  
Sbjct: 15  VFRHNLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQ 74

Query: 225 LRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAV 284
             I      +A+ L +      + V   +++F K+  ++L SW +MI  Y  N   A+A 
Sbjct: 75  RNIVSWNSMIAAYLHN------DRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKAR 128

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMY 344
           +L+       + P   +     P C                            NA+V  Y
Sbjct: 129 NLF------NLLPYKWN-----PVCC---------------------------NAMVAGY 150

Query: 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404
           AK     EAR +FD M  +D+VSW SM++ Y  +G+    +  F +M       D +++ 
Sbjct: 151 AKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAER----DVVSWN 206

Query: 405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM 464
            ++      G L     +F+ +       P    +  ++    R GK+ EA  L  QMP+
Sbjct: 207 LMVDGFVEVGDLNSSWEFFEKIPN-----PNTVSWVTMLCGFARFGKIAEARRLFDQMPI 261

Query: 465 EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY-YVLLSNIYAKAGRWGDVKR 523
             N   W +++AA     ++D  I     +F   P ++   +  + N Y + G+   +  
Sbjct: 262 R-NVVAWNAMIAAYVQNCHVDEAI----SLFMEMPEKNSISWTTVINGYVRMGK---LDE 313

Query: 524 VRKFMNSKGIKKMPGASVEMNDQVQ 548
            R+ +N    + +   +  ++  VQ
Sbjct: 314 ARQLLNQMPYRNVAAQTAMISGYVQ 338



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 3/170 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LH Q+++     ++  +   L+  Y  CG +     +F +I + +VV +N LI +Y  
Sbjct: 474 KQLH-QLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYAL 532

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI-HCSVVKVGLDYNLF 166
           N    +AL ++  M V G  PD  T+  +L ACS    +  GL++  C V    ++    
Sbjct: 533 NGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAE 592

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEA 215
           +   +V + G+ G L+EA +++  M  + +   W +++     +G  + A
Sbjct: 593 HYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELA 642


>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 178/523 (34%), Positives = 283/523 (54%), Gaps = 28/523 (5%)

Query: 45  KTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           K   ++H Q+I++  L    + G  +         +     +F+ +   +    N ++R+
Sbjct: 73  KEFNQIHTQLIVSGLLQQPLAAGRAVKTLCSFPDSVQHAVSLFEGLEEPDAFICNTIMRT 132

Query: 105 YVNNYLYYDALHVY-KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           YVN    Y AL  Y + M      P+ YT+P ++K C    S+  G +IH  ++K G + 
Sbjct: 133 YVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFEL 192

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           +LF  N L+ MY  CG + +AR +       D+VTWNSM+ GY +NG    A ++  EM 
Sbjct: 193 DLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMP 252

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLS-------------------------VKEMFLK 258
              +      +A  + +   T+ E++ +                           E+F  
Sbjct: 253 ERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNW 312

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +  +N+VSWN+M+A+Y       E + ++ +M    + PN  ++ SVL AC  L  L  G
Sbjct: 313 MPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETM-PNEATLVSVLTACAHLGRLDRG 371

Query: 319 RKIHRYVERKK-LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           + IH Y++  + ++P++ L  AL+ MYAKCG++  AR VFD+M  + VVSW SMI  YGM
Sbjct: 372 KWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGM 431

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
            GQ   A+ +F  M   G  P+   F+ VLSAC+H+G++ EG +YF +M   YK+ P++E
Sbjct: 432 HGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVE 491

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHL 497
           H+ C+VDLLGRAG +++  +LI++MPME    +WG+L++AC  +SN ++  + A  +  L
Sbjct: 492 HYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIEL 551

Query: 498 APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            P   G Y+LLSNIYA  G+W DV+ VRK M  +G+ K  G S
Sbjct: 552 EPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGFS 594


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 179/536 (33%), Positives = 304/536 (56%), Gaps = 35/536 (6%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +LH  + +   L S  ++   L+  Y  C  + D   +F  +   ++V +N +I   V N
Sbjct: 268 QLHT-LAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQN 326

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
                AL ++ +M   G  PD  T   +L A +  N    G ++H  +V+  +  ++F  
Sbjct: 327 GFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLV 386

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           + LV +Y KC  ++ A+ V +   + DVV  ++M++GY  NG   EA+ + R +    I+
Sbjct: 387 SALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIR 446

Query: 229 PDADTMASLLPSVTNTSP----------------ENVLSVKE-----------------M 255
           P+A  +AS+LP+  + +                 E    V+                  +
Sbjct: 447 PNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYI 506

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F K+  K+ V+WN MI+ +A N  P EA++L+ +M + G++ + ++++SVL AC  L A+
Sbjct: 507 FSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAI 566

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             G++IH  V +  ++ +L  E+AL+DMY KCG+L  A  VF+ M  ++ VSW S+I++Y
Sbjct: 567 YYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASY 626

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
           G  G   ++V+L   M   G   D + F++++SAC+HAG ++EG   F+ MTE+Y++ PR
Sbjct: 627 GAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPR 686

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
           +EHFAC+VDL  RAGK+++A +LI  MP +P+  IWG+L+ AC ++ N+++  +A+  +F
Sbjct: 687 MEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELF 746

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            L P+ SGYYVL+SNI A AGRW  V +VR+ M    ++K+PG S V++N+   + 
Sbjct: 747 KLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNNTSHLF 802



 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 151/478 (31%), Positives = 252/478 (52%), Gaps = 49/478 (10%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L++ Y   G + D R VFD +  ++ V +NV++  YV       A+ ++ +M   G
Sbjct: 183 VGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASG 242

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            +P+  T  C L   +  + L  G+Q+H   VK GL+  +   N LV+MY KC CL +  
Sbjct: 243 CEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGW 302

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           ++   MP  D+VTWN M++G  QNG  D+AL +  +M+   I+PD+ T+ SLLP++T+ +
Sbjct: 303 KLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLN 362

Query: 246 PEN--------------------VLSVKEMFLK----------LDNK---NLVSWNVMIA 272
             N                    V ++ +++ K           D+    ++V  + MI+
Sbjct: 363 GFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMIS 422

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y  N M  EAV ++  +   GI PNA+++ASVLPAC  ++A+ LG+++H Y  +   + 
Sbjct: 423 GYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEG 482

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
              +E+AL+DMYAKCG L  +  +F ++  +D V+W SMIS++  +G+  +A+ LF +M 
Sbjct: 483 RCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMC 542

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA--CLVDLLGRAG 450
           M G+   ++   SVLSAC+    +  G+    ++    K   R + FA   L+D+ G+ G
Sbjct: 543 MEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVI---KGPIRADLFAESALIDMYGKCG 599

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAACCLYS----------NMDIGILAADHIFHLA 498
            +E A+ + + MP E NE  W S++A+   Y           +M      ADH+  LA
Sbjct: 600 NLEWAHRVFESMP-EKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLA 656



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 123/469 (26%), Positives = 238/469 (50%), Gaps = 44/469 (9%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF---FNVLIRSY 105
           ++H + +      ++ ++  +L+  Y    +  D   VF  +          +N LIR  
Sbjct: 60  QVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGL 119

Query: 106 VNNYLYYDALHVYKNMSVHGFDP--DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
                Y  AL  Y  M  H   P  D +T+P V+K+C+   ++ +G  +H +   +GLD 
Sbjct: 120 TMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDG 179

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           ++F G+ L+ MY   G L +AR+V + M  +D V WN M+ GY + G    A+++  +M 
Sbjct: 180 DMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMR 239

Query: 224 SLRIKPDADTMASLLPSVTNTSPE-------NVLSVK----------------------- 253
           +   +P+  T+A  L SV+ T  +       + L+VK                       
Sbjct: 240 ASGCEPNFATLACFL-SVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCL 298

Query: 254 ----EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
               ++F  +   +LV+WN MI+    N    +A+ L+  M+  GI P+++++ S+LPA 
Sbjct: 299 DDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPAL 358

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
            DL+    G+++H Y+ R  +  ++ L +ALVD+Y KC ++  A++V+D  +  DVV  +
Sbjct: 359 TDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGS 418

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMTE 428
           +MIS Y ++G   +AV +F  +L  G+ P+++A  SVL AC+    ++ G+  +   +  
Sbjct: 419 TMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKN 478

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            Y+    +E  + L+D+  + G+++ ++ +  ++  + +E  W S++++
Sbjct: 479 AYEGRCYVE--SALMDMYAKCGRLDLSHYIFSKISAK-DEVTWNSMISS 524



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 167/362 (46%), Gaps = 36/362 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LH  I+ N  +H +  +   L+  Y  C  +   + V+D     +VV  + +I  YV 
Sbjct: 368 KELHGYIVRNC-VHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVL 426

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N +  +A+ +++ +   G  P+      VL AC+   ++ +G ++H   +K   +   + 
Sbjct: 427 NGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYV 486

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            + L+ MY KCG L  +  + + + +KD VTWNSM++ +AQNG  +EAL++ REM    +
Sbjct: 487 ESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGV 546

Query: 228 KPDADTMASLL----------------------PSVTNTSPENVL-----------SVKE 254
           K    T++S+L                      P   +   E+ L               
Sbjct: 547 KYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHR 606

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F  +  KN VSWN +IA Y    +  E+V L   M+  G + + ++  +++ AC     
Sbjct: 607 VFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQ 666

Query: 315 LLLGRKIHR-YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMI 372
           +  G ++ R   E  ++ P +     +VD+Y++ G L +A  +   M  + D   W +++
Sbjct: 667 VQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALL 726

Query: 373 SA 374
            A
Sbjct: 727 HA 728



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 142/288 (49%), Gaps = 21/288 (7%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +K  ++LH+  + N +      +   LM  Y  CG++  + ++F +I+ K+ V +N +I 
Sbjct: 465 MKLGQELHSYALKNAY-EGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMIS 523

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           S+  N    +AL++++ M + G      T   VL AC+   ++  G +IH  V+K  +  
Sbjct: 524 SFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRA 583

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           +LF  + L+ MYGKCG L+ A RV   MP K+ V+WNS++A Y   G   E++ + R M+
Sbjct: 584 DLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQ 643

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS-----WNVMIAVYANNS 278
               K D  T  +L+ +  +     V     +F  +  +  ++     +  M+ +Y+   
Sbjct: 644 EEGFKADHVTFLALVSACAHAG--QVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAG 701

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
              +A++L + M     +P+A    ++L AC          ++HR VE
Sbjct: 702 KLDKAMELIVDMP---FKPDAGIWGALLHAC----------RVHRNVE 736



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 12/229 (5%)

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEP--NAISVASVLPACGDLSALLLGRKIHRY 324
           WN +I           A+  YL+M  H   P  ++ +   V+ +C  L A+ LGR +HR 
Sbjct: 112 WNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRT 171

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
                L  ++ + +AL+ MYA  G L +AR VFD M  +D V W  M+  Y  +G    A
Sbjct: 172 ARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSA 231

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI----MTEQYKLVPRIEHFA 440
           V LF  M  SG  P+       LS  +      E   +F +    +  +Y L   +    
Sbjct: 232 VELFGDMRASGCEPNFATLACFLSVSA-----TESDLFFGVQLHTLAVKYGLESEVAVAN 286

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
            LV +  +   +++ + L   MP + +   W  +++ C     +D  +L
Sbjct: 287 TLVSMYAKCKCLDDGWKLFGLMPRD-DLVTWNGMISGCVQNGFVDQALL 334


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 165/441 (37%), Positives = 260/441 (58%), Gaps = 42/441 (9%)

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
           L  Y  M   G   D +T P VLK+C+  + + +G  +H   ++VGL+ + + G  L+ M
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
           Y KCG + +AR++ + M  +D+ +WN+++AGY + G    A D                 
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAED----------------- 194

Query: 235 ASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
                               +F +++++N+VSW  MI+ Y  N    +A+ L+ +M   G
Sbjct: 195 --------------------LFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDG 234

Query: 295 IE--PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
            E  PN +++ SVLPAC   +AL  GR+IH +     L  N  ++ AL  MYAKC SL E
Sbjct: 235 SEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVE 294

Query: 353 ARTVFDQM--RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
           AR  FD +    +++++W +MI+AY   G G +AV++F  ML +G+ PD++ F+ +LS C
Sbjct: 295 ARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGC 354

Query: 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI 470
           SH+GL++ G  +F  M   + + PR+EH+AC+VDLLGRAG++ EA +LI QMPM+    +
Sbjct: 355 SHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSV 414

Query: 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530
           WG+L+AAC  + N++I  LAA  +F L P+ SG YVLLSN+YA+AG W +VK++R  +  
Sbjct: 415 WGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKY 474

Query: 531 KGIKKMPGAS-VEMNDQVQII 550
           +G+KK PG S +E+N +  + 
Sbjct: 475 QGMKKSPGCSWIEINGKSHLF 495



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 30/162 (18%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--KNVVFFNVLIRSYVNNYLYYDALHV 117
           LH N S+   L   Y  C  +V+ R  FD I    KN++ +N +I +Y ++    +A+ +
Sbjct: 272 LHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSI 331

Query: 118 YKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG------- 170
           ++NM   G  PD  T+  +L  CS           H  ++  GL++  FN  G       
Sbjct: 332 FENMLRAGVQPDAVTFMGLLSGCS-----------HSGLIDAGLNH--FNDMGTIHSVEP 378

Query: 171 -------LVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVA 204
                  +V + G+ G L EA+ +++ MP +     W +++A
Sbjct: 379 RVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLA 420


>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
          Length = 688

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 182/517 (35%), Positives = 292/517 (56%), Gaps = 29/517 (5%)

Query: 39  DKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGA---CGQMVDTRHVFDEITNKNV 95
           +K   ++ LK LHAQII+  H  +N ++ L  + ++ A    G +   + +FD+I   N 
Sbjct: 122 EKCSSMRGLKLLHAQIIL--HGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNK 179

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
             +N LIR Y N+    DA+ +++ M   G  P+ +T P VLKAC   ++    + +H  
Sbjct: 180 FMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGL 239

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA----------- 204
            +K+G+   +F  N L+A+Y  CG +  AR++ +D+  K +V+WNSM+            
Sbjct: 240 AIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGVKIDIIVR 299

Query: 205 -----GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSV-KEMFLK 258
                 YA+ G    A       +++  +     + S    ++  +    + V +++F +
Sbjct: 300 NALXDMYAKCGNLHSA-------QAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQ 352

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +  KN+VSWN MI+ Y       EA+DL+ +M    + P+  ++ S+L AC  L  L++G
Sbjct: 353 MPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMG 412

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           +KIH Y+   K    + L N+L+DMYAKCG +  A  +F +M  +++VSW  +I A  + 
Sbjct: 413 KKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALH 472

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           G G +A+ LF +M   G  PD I    +LSACSH+GL++ G YYF  M   Y++   IEH
Sbjct: 473 GCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEH 532

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
           +AC+VDLLGR G + EA +LI +MPM+P+  +WG+L+ AC ++ N++IG      +  L 
Sbjct: 533 YACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELE 592

Query: 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK 535
           P+  G YVL+SNIY +A RW DVK++RK M  +GIKK
Sbjct: 593 PHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKK 629


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 172/480 (35%), Positives = 277/480 (57%), Gaps = 5/480 (1%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G + +   VFD++  ++ V +N LI  + +N     AL V   M   GF P 
Sbjct: 95  LLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPT 154

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            Y++   L+ACS    L  G QIH  +V   L  N F  N +  MY KCG + +AR + +
Sbjct: 155 QYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFD 214

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            M  K+VV+WN M++GY + G  +E + +  EM+   +KPD  T++++L +        V
Sbjct: 215 GMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCG--RV 272

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
              + +F+KL  K+ + W  MI  YA N    +A  L+  M    ++P++ +++S++ +C
Sbjct: 273 DDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSC 332

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L++L  G+ +H  V    +  ++ + +ALVDMY KCG   +AR +F+ M  ++V++W 
Sbjct: 333 AKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWN 392

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           +MI  Y  +GQ  +A+ L+ +M      PD+I FV VLSAC +A +++EG+ YF  ++E 
Sbjct: 393 AMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMVKEGQKYFDSISE- 451

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           + + P ++H+AC++ LLGR+G V++A DLI+ MP EPN RIW +L++ C    ++    L
Sbjct: 452 HGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLSVCA-KGDLKNAEL 510

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           AA H+F L P  +G Y++LSN+YA  GRW DV  VR  M  K  KK    S VE+ ++V 
Sbjct: 511 AASHLFELDPRNAGPYIMLSNLYAACGRWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVH 570



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 159/318 (50%), Gaps = 49/318 (15%)

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           F  N L+ +Y K G L +A+ V ++M  +DV +WN++++ YA+ G           +E+L
Sbjct: 59  FIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGM----------VENL 108

Query: 226 RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285
            +                           +F ++  ++ VS+N +IA +A+N    +A+ 
Sbjct: 109 HV---------------------------VFDQMPYRDSVSYNTLIACFASNGHSGKALK 141

Query: 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
           + ++M+  G +P   S  + L AC  L  L  G++IH  +    L  N  + NA+ DMYA
Sbjct: 142 VLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYA 201

Query: 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
           KCG + +AR +FD M  ++VVSW  MIS Y   G   + + LF++M +SGL PD +   +
Sbjct: 202 KCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSN 261

Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA--GKVEEAYDLIKQM- 462
           VL+A    G +++ R  F  +       P+ +       ++G A  G+ E+A+ L   M 
Sbjct: 262 VLNAYFRCGRVDDARNLFIKL-------PKKDEICWTTMIVGYAQNGREEDAWMLFGDML 314

Query: 463 --PMEPNERIWGSLVAAC 478
              ++P+     S+V++C
Sbjct: 315 RRNVKPDSYTISSMVSSC 332



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 170/385 (44%), Gaps = 75/385 (19%)

Query: 24  TQYTLLSG-DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD 82
           TQY+ ++   AC+ +LD    ++  K++H +I++   L  N  +   +   Y  CG +  
Sbjct: 154 TQYSHVNALQACSQLLD----LRHGKQIHGRIVVAD-LGENTFVRNAMTDMYAKCGDIDK 208

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
            R +FD + +KNVV +N++I  YV      + +H++  M + G  PD  T   VL A   
Sbjct: 209 ARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNA--- 265

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
                                           Y +CG + +AR +   +P KD + W +M
Sbjct: 266 --------------------------------YFRCGRVDDARNLFIKLPKKDEICWTTM 293

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP---ENVLSVKEMFLKL 259
           + GYAQNGR ++A  +  +M    +KPD+ T++S++ S    +      V+  K + + +
Sbjct: 294 IVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGI 353

Query: 260 DN------------------------------KNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
           DN                              +N+++WN MI  YA N    EA+ LY +
Sbjct: 354 DNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYER 413

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M+    +P+ I+   VL AC +   +  G+K    +    + P L     ++ +  + GS
Sbjct: 414 MQQENFKPDNITFVGVLSACINADMVKEGQKYFDSISEHGIAPTLDHYACMITLLGRSGS 473

Query: 350 LTEARTVFDQMRCQ-DVVSWTSMIS 373
           + +A  +   M  + +   W++++S
Sbjct: 474 VDKAVDLIQGMPHEPNYRIWSTLLS 498



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 23/155 (14%)

Query: 309 CGDLSALLLGRKIHRYVERKKLQP-NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           C   +  +  +++  ++E    QP +  + N L+ +YAK G L++A+ VFD M  +DV S
Sbjct: 32  CARANDFIQAKRLQSHMELNLFQPKDSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYS 91

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF---VSVLSACSHAG--------LL 416
           W +++SAY   G   +   +F +M       DS+++   ++  ++  H+G        + 
Sbjct: 92  WNTLLSAYAKMGMVENLHVVFDQMPYR----DSVSYNTLIACFASNGHSGKALKVLVRMQ 147

Query: 417 EEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
           E+G         QY  V  ++  + L+DL  R GK
Sbjct: 148 EDG-----FQPTQYSHVNALQACSQLLDL--RHGK 175


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 179/536 (33%), Positives = 304/536 (56%), Gaps = 35/536 (6%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +LH  + +   L S  ++   L+  Y  C  + D   +F  +   ++V +N +I   V N
Sbjct: 268 QLHT-LAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQN 326

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
                AL ++ +M   G  PD  T   +L A +  N    G ++H  +V+  +  ++F  
Sbjct: 327 GFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLV 386

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           + LV +Y KC  ++ A+ V +   + DVV  ++M++GY  NG   EA+ + R +    I+
Sbjct: 387 SALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIR 446

Query: 229 PDADTMASLLPSVTNTSP----------------ENVLSVKE-----------------M 255
           P+A  +AS+LP+  + +                 E    V+                  +
Sbjct: 447 PNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYI 506

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F K+  K+ V+WN MI+ +A N  P EA++L+ +M + G++ + ++++SVL AC  L A+
Sbjct: 507 FSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAI 566

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             G++IH  V +  ++ +L  E+AL+DMY KCG+L  A  VF+ M  ++ VSW S+I++Y
Sbjct: 567 YYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASY 626

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
           G  G   ++V+L   M   G   D + F++++SAC+HAG ++EG   F+ MTE+Y++ PR
Sbjct: 627 GAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPR 686

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
           +EHFAC+VDL  RAGK+++A +LI  MP +P+  IWG+L+ AC ++ N+++  +A+  +F
Sbjct: 687 MEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELF 746

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            L P+ SGYYVL+SNI A AGRW  V +VR+ M    ++K+PG S V++N+   + 
Sbjct: 747 KLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNNTSHLF 802



 Score =  248 bits (632), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 151/478 (31%), Positives = 252/478 (52%), Gaps = 49/478 (10%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L++ Y   G + D R VFD +  ++ V +NV++  YV       A+ ++ +M   G
Sbjct: 183 VGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASG 242

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            +P+  T  C L   +  + L  G+Q+H   VK GL+  +   N LV+MY KC CL +  
Sbjct: 243 CEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGW 302

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           ++   MP  D+VTWN M++G  QNG  D+AL +  +M+   I+PD+ T+ SLLP++T+ +
Sbjct: 303 KLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLN 362

Query: 246 PEN--------------------VLSVKEMFLK----------LDNK---NLVSWNVMIA 272
             N                    V ++ +++ K           D+    ++V  + MI+
Sbjct: 363 GFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMIS 422

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y  N M  EAV ++  +   GI PNA+++ASVLPAC  ++A+ LG+++H Y  +   + 
Sbjct: 423 GYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEG 482

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
              +E+AL+DMYAKCG L  +  +F ++  +D V+W SMIS++  +G+  +A+ LF +M 
Sbjct: 483 RCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMC 542

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA--CLVDLLGRAG 450
           M G+   ++   SVLSAC+    +  G+    ++    K   R + FA   L+D+ G+ G
Sbjct: 543 MEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVI---KGPIRADLFAESALIDMYGKCG 599

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAACCLYS----------NMDIGILAADHIFHLA 498
            +E A+ + + MP E NE  W S++A+   Y           +M      ADH+  LA
Sbjct: 600 NLEWAHRVFESMP-EKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLA 656



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 123/469 (26%), Positives = 238/469 (50%), Gaps = 44/469 (9%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF---FNVLIRSY 105
           ++H + +      ++ ++  +L+  Y    +  D   VF  +          +N LIR  
Sbjct: 60  QVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGL 119

Query: 106 VNNYLYYDALHVYKNMSVHGFDP--DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
                Y  AL  Y  M  H   P  D +T+P V+K+C+   ++ +G  +H +   +GLD 
Sbjct: 120 TMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDG 179

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           ++F G+ L+ MY   G L +AR+V + M  +D V WN M+ GY + G    A+++  +M 
Sbjct: 180 DMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMR 239

Query: 224 SLRIKPDADTMASLLPSVTNTSPE-------NVLSVK----------------------- 253
           +   +P+  T+A  L SV+ T  +       + L+VK                       
Sbjct: 240 ASGCEPNFATLACFL-SVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCL 298

Query: 254 ----EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
               ++F  +   +LV+WN MI+    N    +A+ L+  M+  GI P+++++ S+LPA 
Sbjct: 299 DDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPAL 358

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
            DL+    G+++H Y+ R  +  ++ L +ALVD+Y KC ++  A++V+D  +  DVV  +
Sbjct: 359 TDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGS 418

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMTE 428
           +MIS Y ++G   +AV +F  +L  G+ P+++A  SVL AC+    ++ G+  +   +  
Sbjct: 419 TMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKN 478

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            Y+    +E  + L+D+  + G+++ ++ +  ++  + +E  W S++++
Sbjct: 479 AYEGRCYVE--SALMDMYAKCGRLDLSHYIFSKISAK-DEVTWNSMISS 524



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 167/362 (46%), Gaps = 36/362 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LH  I+ N  +H +  +   L+  Y  C  +   + V+D     +VV  + +I  YV 
Sbjct: 368 KELHGYIVRNC-VHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVL 426

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N +  +A+ +++ +   G  P+      VL AC+   ++ +G ++H   +K   +   + 
Sbjct: 427 NGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYV 486

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            + L+ MY KCG L  +  + + + +KD VTWNSM++ +AQNG  +EAL++ REM    +
Sbjct: 487 ESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGV 546

Query: 228 KPDADTMASLL----------------------PSVTNTSPENVL-----------SVKE 254
           K    T++S+L                      P   +   E+ L               
Sbjct: 547 KYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHR 606

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F  +  KN VSWN +IA Y    +  E+V L   M+  G + + ++  +++ AC     
Sbjct: 607 VFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQ 666

Query: 315 LLLGRKIHR-YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMI 372
           +  G ++ R   E  ++ P +     +VD+Y++ G L +A  +   M  + D   W +++
Sbjct: 667 VQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALL 726

Query: 373 SA 374
            A
Sbjct: 727 HA 728



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 142/288 (49%), Gaps = 21/288 (7%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +K  ++LH+  + N +      +   LM  Y  CG++  + ++F +I+ K+ V +N +I 
Sbjct: 465 MKLGQELHSYALKNAY-EGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMIS 523

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           S+  N    +AL++++ M + G      T   VL AC+   ++  G +IH  V+K  +  
Sbjct: 524 SFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRA 583

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           +LF  + L+ MYGKCG L+ A RV   MP K+ V+WNS++A Y   G   E++ + R M+
Sbjct: 584 DLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQ 643

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS-----WNVMIAVYANNS 278
               K D  T  +L+ +  +     V     +F  +  +  ++     +  M+ +Y+   
Sbjct: 644 EEGFKADHVTFLALVSACAHAG--QVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAG 701

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
              +A++L + M     +P+A    ++L AC          ++HR VE
Sbjct: 702 KLDKAMELIVDMP---FKPDAGIWGALLHAC----------RVHRNVE 736



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 12/229 (5%)

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEP--NAISVASVLPACGDLSALLLGRKIHRY 324
           WN +I           A+  YL+M  H   P  ++ +   V+ +C  L A+ LGR +HR 
Sbjct: 112 WNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRT 171

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
                L  ++ + +AL+ MYA  G L +AR VFD M  +D V W  M+  Y  +G    A
Sbjct: 172 ARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSA 231

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI----MTEQYKLVPRIEHFA 440
           V LF  M  SG  P+       LS  +      E   +F +    +  +Y L   +    
Sbjct: 232 VELFGDMRASGCEPNFATLACFLSVSA-----TESDLFFGVQLHTLAVKYGLESEVAVAN 286

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
            LV +  +   +++ + L   MP + +   W  +++ C     +D  +L
Sbjct: 287 TLVSMYAKCKCLDDGWKLFGLMPRD-DLVTWNGMISGCVQNGFVDQALL 334


>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
          Length = 551

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 165/506 (32%), Positives = 281/506 (55%), Gaps = 46/506 (9%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
            + L ++H  ++    +  +  +  +++    A  ++     VF ++ + N+   N +I+
Sbjct: 27  FRDLLRVHGHVV-RLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIK 85

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDP-------DCYTYPCVLKACSGSNSLLVGLQIHCSV 156
           +Y  N+ + DA+ VY  M      P       D +TYP +LKAC G+ +L +G Q+H  V
Sbjct: 86  AYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHV 145

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           V+ G D +    N L+ MY + G L  A +V ++M  +DVV+WN +++ +A+ G+  +A 
Sbjct: 146 VRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKA- 204

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                                 +F  + +K +V+W  M++ Y  
Sbjct: 205 ------------------------------------TALFNSMPDKTIVTWTAMVSGYTT 228

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
                 AVD +  M+  G EP+ +S+ +VLPAC  L  L LGR I+ Y +R  +  +  +
Sbjct: 229 VGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHI 288

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG- 395
            NAL++MYAKCG + +A  +FD M  +DV+SW+++I      G+ ++AV LF++M   G 
Sbjct: 289 CNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGK 348

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + P+ I FV +LSACS+AGL++EG  +F  M + Y + P +EH+ C+VDLLGR+G++  A
Sbjct: 349 VRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRA 408

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
            DL++ MP+  + ++WGSL++AC  + ++D  +LAA+ +  L P+  G  V+L+N+YA A
Sbjct: 409 LDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAA 468

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGASV 541
            RW DV   RK + S+ ++K PG S+
Sbjct: 469 RRWSDVASTRKAIRSRSMRKTPGCSL 494


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 168/472 (35%), Positives = 266/472 (56%), Gaps = 36/472 (7%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M + G + +   Y  VL  C    ++  G ++H  ++K   +  ++    L+ +Y KC C
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           L +ARRVL++MP ++VV+W +M++GY+Q G   EAL +  EM      P+  T A++L S
Sbjct: 61  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120

Query: 241 VTNTS---------------------------------PENVLSVKEMFLKLDNKNLVSW 267
            T++S                                    +   + +F  L  +++VS 
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 180

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
             +I+ YA   +  EA+DL+ +++  G+  N ++ ASVL A   L+AL  GR++H +V R
Sbjct: 181 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 240

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
            KL   + L+N+L+DMY+KCGSLT +R +FD M  + V+SW +M+  Y   G G +AV L
Sbjct: 241 AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVEL 300

Query: 388 FSKMLMSG-LCPDSIAFVSVLSACSHAGLLEEG-RYYFKIMTEQYKLVPRIEHFACLVDL 445
           F  M     + PDS+ F++VLS CSH G+ + G   +++++ ++    P IEH+ C+VDL
Sbjct: 301 FKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDL 360

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
            GRAG+VEEA++ IK+MP EP   IWGSL+ AC ++ N+ IG   A  +  +    +G Y
Sbjct: 361 FGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNY 420

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           V+LSN+YA AGRW DV+ VR+ M  K + K PG S +E++  +       RS
Sbjct: 421 VILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRS 472



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 185/370 (50%), Gaps = 42/370 (11%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLK--LMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           I+  +++HA +I   +    P + L+  L+  Y  C  + D R V DE+  +NVV +  +
Sbjct: 26  IREGQRVHAHMIKTCY---EPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAM 82

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           I  Y       +ALH++  M + G  P+ +T+  VL +C+ S+   +G QIH  V+K   
Sbjct: 83  ISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSF 142

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           + ++F G+ L+ MY K G + EARRV + +P +DVV+  ++++GYAQ G  +EALD+ R 
Sbjct: 143 ESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRR 202

Query: 222 MESLRIKPDADTMASLLPSVTNTSP--------ENVLSVK-------------------- 253
           ++   ++ +  T AS+L +++  +          +VL  K                    
Sbjct: 203 LQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGS 262

Query: 254 -----EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY-LQMEVHGIEPNAISVASVLP 307
                 +F  +  + ++SWN M+  Y+ + +  EAV+L+ L  E + ++P++++  +VL 
Sbjct: 263 LTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLS 322

Query: 308 ACGDLSALLLGRKIHRYVERKK--LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
            C        G +I   +  +K   +P +     +VD++ + G + EA     +M  +  
Sbjct: 323 GCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPT 382

Query: 366 VS-WTSMISA 374
            + W S++ A
Sbjct: 383 AAIWGSLLGA 392


>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 519

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 178/507 (35%), Positives = 287/507 (56%), Gaps = 14/507 (2%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIG-LKLMRTYGACGQMVD------TRHVFDEITNKN 94
           P++KTLK++HA +IIN   ++   +G L L  +    G             +F +I   +
Sbjct: 13  PNLKTLKQIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQIPQPD 72

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
              +NV+IR    +     A+ +Y  M  H    D YT+P VLKAC+    +  G  +H 
Sbjct: 73  TFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNTGSAVHG 132

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            V+++G   N    N L+  + KCG L  A  + +D    DVV W+S++AGYA+ G    
Sbjct: 133 MVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKV 192

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
           A  +  EM      P+ D ++  +          + S + +F +   K++VSWN MIA Y
Sbjct: 193 ARKLFNEM------PERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGY 246

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH-RYVERKKLQPN 333
               +  +A++L+ +M   G+ P+ +++ S+L AC DL  L  G+K+H + +E    + +
Sbjct: 247 VVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLS 306

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             L NAL+DMYAKCG++ E+  VF  +  +DV+SW S+I    + G G ++++LF  M  
Sbjct: 307 TLLGNALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQR 366

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           + +CP+ I FV VL ACSHAG ++EG  YF +M+ +YK+ P I H  C+VD+LGRAG ++
Sbjct: 367 TKICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLK 426

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA   I  M +EPN  IW +L+AAC ++ ++++  +A + +F +  + SG YVL+SN+YA
Sbjct: 427 EAAKFIDSMKIEPNAIIWRTLLAACKVHGDVELAKVANEKLFSMRKDHSGDYVLMSNLYA 486

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGAS 540
             G W   ++VRK M+  G+ K+ G+S
Sbjct: 487 SRGEWDGAEKVRKLMDDSGVTKIRGSS 513


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 181/522 (34%), Positives = 299/522 (57%), Gaps = 16/522 (3%)

Query: 27  TLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIG--LKLMRTYGACGQMVDTR 84
           T +S +    +LDK   +  L+++HAQ+I    L+   ++   +      G  G +    
Sbjct: 2   TAISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYAS 61

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDC-YTYPCVLKACSG 142
            VF  I + N   F  LI+ + +     ++L +Y  M S   +     ++ P VLKAC  
Sbjct: 62  SVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGK 121

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
             +   G Q+H  V+K  L ++ F GN +V MY   G ++ ARRV + MP++DVV+WNSM
Sbjct: 122 LLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSM 181

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMA--SLLPSVTNTSPENVLSVKEMFLKLD 260
           +AGY + G  + A ++  EM      P+ D ++  +++          +   +++F  + 
Sbjct: 182 IAGYLKAGEIELASELFDEM------PERDLVSCNAMIDGYGKCGRCEL--AEKVFETMS 233

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
           +K++V+W  MI+ Y  N  P +A+DL+ +M   G+ P+  ++ SVL A  DL  +  G+ 
Sbjct: 234 DKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKW 293

Query: 321 IHRYVERKKLQ-PNLRLENALVDMYAKCGSLTEARTVFDQM-RCQDVVSWTSMISAYGMS 378
           +H YV   K++  +  + +AL+DMY+KCG +  A  VF  +   +++  W SMIS   + 
Sbjct: 294 LHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIH 353

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           G   +A+ +F +M    + P+ I F+ +LS CSH GL+EEG++YF+ M E+YK+VPRI+H
Sbjct: 354 GLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQH 413

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
           + C++DL GRAG++E+A  +I+ MP E +   W ++++A   + +++IG  AA     LA
Sbjct: 414 YGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELA 473

Query: 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           P+ S  YVLLSNIYAKAGRW DV ++R  M  +G+KK+ G S
Sbjct: 474 PDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCS 515


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 181/510 (35%), Positives = 283/510 (55%), Gaps = 36/510 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y   G + D R VFD +  KN V +N L+ +YV N    +A  ++K+         
Sbjct: 163 MLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL--- 219

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSV-VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
             ++ C+L        ++   Q   S+ V+     ++ + N ++  Y + G + EAR++ 
Sbjct: 220 -VSWNCLLGGFVKKKKIVEARQFFDSMNVR-----DVVSWNTIITGYAQSGKIDEARQLF 273

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR-----------IKPDADTMASL 237
           ++ P +DV TW +MV+GY QN   +EA ++  +M               ++ +   MA  
Sbjct: 274 DESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKE 333

Query: 238 LPSV---TNTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
           L  V    N S  N +             K +F K+  ++ VSW  MIA Y+ +    EA
Sbjct: 334 LFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEA 393

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
           + L++QME  G   N  S +S L  C D+ AL LG+++H  + +   +    + NAL+ M
Sbjct: 394 LRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLM 453

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
           Y KCGS+ EA  +F +M  +D+VSW +MI+ Y   G G  A+  F  M   GL PD    
Sbjct: 454 YCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATM 513

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           V+VLSACSH GL+++GR YF  MT+ Y ++P  +H+AC+VDLLGRAG +E+A++L+K MP
Sbjct: 514 VAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMP 573

Query: 464 MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKR 523
            EP+  IWG+L+ A  ++ N ++   AAD IF + P  SG YVLLSN+YA +GRWGDV +
Sbjct: 574 FEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGK 633

Query: 524 VRKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
           +R  M  KG+KK+PG S +E+ ++    ++
Sbjct: 634 LRVRMRDKGVKKVPGYSWIEIQNKTHTFSV 663



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 199/446 (44%), Gaps = 93/446 (20%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G+    R +FDE+  +++V +NV+I+ YV N     A  +++ M      P+        
Sbjct: 109 GEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIM------PE-------R 155

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
             CS  N++L G                         Y + GC+ +AR V + MP K+ V
Sbjct: 156 DVCSW-NTMLSG-------------------------YAQNGCVDDARSVFDRMPEKNDV 189

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
           +WN++++ Y QN + +EA  + +  E+  +     +   LL        + ++  ++ F 
Sbjct: 190 SWNALLSAYVQNSKMEEACMLFKSRENWALV----SWNCLLGGF--VKKKKIVEARQFFD 243

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI---------------EPNAISV 302
            ++ +++VSWN +I  YA +    EA  L+ +  V  +                  A  +
Sbjct: 244 SMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEAREL 303

Query: 303 ASVLPACGDLS--ALLLGRKIHRYVERKKLQ-----------PNLRLENALVDMYAKCGS 349
              +P   ++S  A+L G     YV+ ++++            N+   N ++  YA+CG 
Sbjct: 304 FDKMPERNEVSWNAMLAG-----YVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGK 358

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           ++EA+ +FD+M  +D VSW +MI+ Y  SG  ++A+ LF +M   G   +  +F S LS 
Sbjct: 359 ISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALST 418

Query: 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD-----LLGRAGKVEEAYDLIKQMPM 464
           C+    LE G+          +LV       C V      +  + G +EEA DL K+M  
Sbjct: 419 CADVVALELGKQL------HGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAG 472

Query: 465 EPNERIWGSLVAACCLYSNMDIGILA 490
           + +   W +++A    YS    G +A
Sbjct: 473 K-DIVSWNTMIAG---YSRHGFGEVA 494



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 153/345 (44%), Gaps = 51/345 (14%)

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           D ++   N  ++ Y + G   EA RV   MP    V++N M++GY +NG F+ A  +  E
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
           M      P+ D ++  +         N+   +E+F  +  +++ SWN M++ YA N    
Sbjct: 121 M------PERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVD 174

Query: 282 EAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL--EN 338
           +A  ++ +M E + +  NA+           LSA +   K+       K + N  L   N
Sbjct: 175 DARSVFDRMPEKNDVSWNAL-----------LSAYVQNSKMEEACMLFKSRENWALVSWN 223

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
            L+  + K   + EAR  FD M  +DVVSW ++I+ Y  SG+  +A  LF +  +     
Sbjct: 224 CLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ---- 279

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ-----------YKLVPRIEHFACLVDLL- 446
           D   + +++S      ++EE R  F  M E+           Y    R+E    L D++ 
Sbjct: 280 DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMP 339

Query: 447 --------------GRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
                          + GK+ EA +L  +MP + +   W +++A 
Sbjct: 340 CRNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 383


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 174/499 (34%), Positives = 278/499 (55%), Gaps = 39/499 (7%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD-PDCYTYPCVLKACSGSN 144
           VF      +V+ +N ++R++VN+ +   AL  Y  M     + PD +T+P +LK C+   
Sbjct: 34  VFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLL 93

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
              VG  +H  VVK  L  +L+    L+ MY  CG LK AR +   M  ++ V W SM++
Sbjct: 94  EFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMIS 153

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV--------------- 249
           GY +N   +EAL + ++ME     PD  TMA+L+ +        V               
Sbjct: 154 GYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKI 213

Query: 250 ------------------LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
                              + +++F +L +K++ +W+ +I  Y  N+   EA+ L+   E
Sbjct: 214 CAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLF--RE 271

Query: 292 VHG---IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           V G   + PN +++ +V+ AC  L  L  GR +H Y+ R +   ++ L N+L+DM++KCG
Sbjct: 272 VAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCG 331

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
            +  A+ +FD M  +D++SW SM++   + G G +A+A F  M  + L PD I F+ VL+
Sbjct: 332 DIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLT 391

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
           ACSHAGL++EG+  F  +   Y +  + EH+ C+VDLL RAG + EA + I+ MP++P+ 
Sbjct: 392 ACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDG 451

Query: 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
            IWGS++ AC +Y+N+++G  AA  +  L P   G Y+LLSNIYA+   W +VK+VR+ M
Sbjct: 452 AIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELM 511

Query: 529 NSKGIKKMPGASVEMNDQV 547
           N KGI+K PG S  + D +
Sbjct: 512 NEKGIQKTPGCSSVVIDNI 530


>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 182/518 (35%), Positives = 286/518 (55%), Gaps = 40/518 (7%)

Query: 67  GLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHG 125
           G  L+  Y   G + D   VFD +  ++VV +N ++  YV+N L   AL  ++ M     
Sbjct: 147 GNSLLAFYARLGLVDDAERVFDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALE 206

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
              D       L AC   ++L+ G ++H  V++ G+++++  G  ++ MY KCG +  A 
Sbjct: 207 VQHDGVGIIAALAACCLESALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAE 266

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            V   MPS+ VVTWN M+ GYA N R +EA D   +M++   + +  T  +LL +   T 
Sbjct: 267 GVFATMPSRTVVTWNCMIGGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTE 326

Query: 246 ------------------PENVL---------------SVKEMFLKLDNKNLVSWNVMIA 272
                             P  VL               S +++F ++  K LVSWN MIA
Sbjct: 327 SSLYGRSVHGYITRRQFLPHVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIA 386

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y    M  EA+ L+L +    + P+  ++++V+PA   L  L   R++H Y+ R     
Sbjct: 387 AYMYKEMYMEAITLFLDLLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIRLGYGE 446

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           N  + NA++ MYA+CG +  +R +FD+M  +DV+SW +MI  Y + GQG  A+ +FS+M 
Sbjct: 447 NTLIMNAIMHMYARCGDVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEMFSEMK 506

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
            +GL P+   FVSVL+ACS +GL +EG   F  M   Y ++P+IEH+ C+ DLLGRAG +
Sbjct: 507 CNGLRPNESTFVSVLTACSVSGLTDEGWTQFNSMQRDYGMIPQIEHYGCMTDLLGRAGDL 566

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ-----SGYYVL 507
           +E    I+ MP++P  R+WGSL+ A    +++DI   AA+ IF L  +Q     +G YVL
Sbjct: 567 KEVMQFIENMPIDPTFRVWGSLLTASRNRNDIDIAEYAAERIFQLEQDQLEHDNTGCYVL 626

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKM-PGASVEMN 544
           +S++YA AGRW DV+R++  M  KG+++  P + VE++
Sbjct: 627 ISSMYADAGRWKDVERIKSLMEEKGLRRTDPRSIVELH 664



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 155/545 (28%), Positives = 252/545 (46%), Gaps = 80/545 (14%)

Query: 64  PSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV 123
           P     L+ ++ A G+M D +       +++    NV+IR   +  L   AL  Y  M  
Sbjct: 42  PGGTKSLVLSHAAAGRMDDAQEALAAAGSRDAFLHNVVIRGLADAGLPGAALAAYAAMLA 101

Query: 124 HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY-NLFNGNGLVAMYGKCGCLK 182
            G  PD +T+P VLK C+   +L  G   H + +++G+   +++ GN L+A Y + G + 
Sbjct: 102 AGARPDRFTFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVD 161

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPD-----ADTMAS 236
           +A RV + MP++DVVTWNSMV GY  NG    AL   REM E+L ++ D     A   A 
Sbjct: 162 DAERVFDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAAC 221

Query: 237 LLPSVTNTSPE----------------------------NVLSVKEMFLKLDNKNLVSWN 268
            L S      E                            ++ S + +F  + ++ +V+WN
Sbjct: 222 CLESALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWN 281

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
            MI  YA N  P EA D ++QM+  G +   ++  ++L AC    + L GR +H Y+ R+
Sbjct: 282 CMIGGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRR 341

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
           +  P++ LE AL++MY+K G +  +  VF QM  + +VSW +MI+AY       +A+ LF
Sbjct: 342 QFLPHVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLF 401

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YYFKI-MTEQYKLVPRIEH-FACL 442
             +L   L PD     +V+ A    GLL + R    Y  ++   E   ++  I H +A  
Sbjct: 402 LDLLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIRLGYGENTLIMNAIMHMYARC 461

Query: 443 VDLL---------------------------GRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
            D+L                           G+     E +  +K   + PNE  + S++
Sbjct: 462 GDVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEMFSEMKCNGLRPNESTFVSVL 521

Query: 476 AACCLYSNMDIGILAADHI---FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532
            AC +    D G    + +   + + P Q  +Y  ++++    GR GD+K V +F     
Sbjct: 522 TACSVSGLTDEGWTQFNSMQRDYGMIP-QIEHYGCMTDLL---GRAGDLKEVMQF----- 572

Query: 533 IKKMP 537
           I+ MP
Sbjct: 573 IENMP 577



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 160/362 (44%), Gaps = 36/362 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++HA  +I   +  +  +G  ++  Y  CG +     VF  + ++ VV +N +I  Y  
Sbjct: 231 REVHA-YVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCMIGGYAL 289

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    +A   +  M   G   +  T   +L AC+ + S L G  +H  + +     ++  
Sbjct: 290 NERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQFLPHVVL 349

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L+ MY K G +K + +V   M +K +V+WN+M+A Y     + EA+ +  ++ +  +
Sbjct: 350 ETALLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFLDLLNQPL 409

Query: 228 KPDADTMASLLPSVT----------------------NTSPEN-----------VLSVKE 254
            PD  TM++++P+                        NT   N           VLS +E
Sbjct: 410 YPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIRLGYGENTLIMNAIMHMYARCGDVLSSRE 469

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F K+  K+++SWN MI  YA +     A++++ +M+ +G+ PN  +  SVL AC     
Sbjct: 470 IFDKMAAKDVISWNTMIMGYAIHGQGRSALEMFSEMKCNGLRPNESTFVSVLTACSVSGL 529

Query: 315 LLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTSMI 372
              G      ++R   + P +     + D+  + G L E     + M        W S++
Sbjct: 530 TDEGWTQFNSMQRDYGMIPQIEHYGCMTDLLGRAGDLKEVMQFIENMPIDPTFRVWGSLL 589

Query: 373 SA 374
           +A
Sbjct: 590 TA 591



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 3/174 (1%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++  +++H+  II      N  I   +M  Y  CG ++ +R +FD++  K+V+ +N +I 
Sbjct: 429 LRQCRQMHS-YIIRLGYGENTLIMNAIMHMYARCGDVLSSREIFDKMAAKDVISWNTMIM 487

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG-LQIHCSVVKVGLD 162
            Y  +     AL ++  M  +G  P+  T+  VL ACS S     G  Q +      G+ 
Sbjct: 488 GYAIHGQGRSALEMFSEMKCNGLRPNESTFVSVLTACSVSGLTDEGWTQFNSMQRDYGMI 547

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEA 215
             + +   +  + G+ G LKE  + + +MP       W S++         D A
Sbjct: 548 PQIEHYGCMTDLLGRAGDLKEVMQFIENMPIDPTFRVWGSLLTASRNRNDIDIA 601


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 180/548 (32%), Positives = 294/548 (53%), Gaps = 40/548 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-----NVVFFNVLI 102
           +++H  +++   L     +   L+  Y  CG + +  ++F+ I +K     N V +NV+I
Sbjct: 231 REIHG-VVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMI 289

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             YV+N  +  AL ++  M V G  PD  T   +   CS S  +  G QIH  + K GL 
Sbjct: 290 SGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLK 349

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD----- 217
            N+     L+ MY KCG +    ++     + +++ W+++++  AQ+G   +AL+     
Sbjct: 350 NNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEF 409

Query: 218 --------------VCREMESLRIKPDADTMASLLPSVTNTSPENVLSV----------- 252
                         V R   SL +KP+   +  L   +   S   V S            
Sbjct: 410 KMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDM 469

Query: 253 ---KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
              K++FL+L  K+LVSWN +I+ YA +    EA+  +  M++  I PN +++A +L  C
Sbjct: 470 GYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVC 529

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             LS + L +++H Y+ R+ L   + + N+L+  YAKCG +  +   F++M  ++ VSW 
Sbjct: 530 AHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWN 589

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           S+I   GM  +  + + LF KM+ SG+ PD + F ++LSACSHAG ++EG  YFK M E 
Sbjct: 590 SIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVED 649

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           + L P++E + C+VDLLGRAG + +AYDLI  MP  P++RIWGSL+ +C  + +  +  +
Sbjct: 650 FNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMAMPCTPDDRIWGSLLGSCKNHGDEILAEI 709

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            A+HIF L P+  GY VLL+N+Y   G+  +  +VR  +   G+KK PG S +E+++   
Sbjct: 710 VANHIFKLVPSSVGYRVLLANLYENLGKGREGSKVRSEIKDMGLKKKPGCSWIEVDNNFH 769

Query: 549 IIALPLRS 556
           I     RS
Sbjct: 770 IFIAGDRS 777



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/517 (25%), Positives = 241/517 (46%), Gaps = 47/517 (9%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   +++H  ++    +  + S+   L+  Y  CG + D   +F+++   ++V +N +I
Sbjct: 124 DVYKGRQIHGHVL-KLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMI 182

Query: 103 RSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
             +  +  Y  +L  +++M    G  P+       + +CS   SL  G +IH  VVK GL
Sbjct: 183 SGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGL 242

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD-----VVTWNSMVAGYAQNGRFDEAL 216
           D   +  + L+ MY KCG +K A  + N +  KD      V WN M++GY  NG F +AL
Sbjct: 243 DVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQAL 302

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNT----------------SPENVLSVK------- 253
            +  +M    IKPD  TM SL    + +                  +N + V+       
Sbjct: 303 LLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMY 362

Query: 254 ----------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISV 302
                     ++F +  N NL+ W+ +I+  A +  P +A++L+ + ++  G+  + I V
Sbjct: 363 LKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILV 422

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
           A VL AC  L+    G +IH    +     ++ + +ALVD+YAKC  +  ++ VF ++  
Sbjct: 423 A-VLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQ 481

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           +D+VSW ++IS Y       +A+  F  M +  + P+++    +LS C+H  ++   +  
Sbjct: 482 KDLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEV 541

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
              +  Q  L   +     L+    + G +  +    ++MP E N+  W S++    ++S
Sbjct: 542 HGYLIRQ-GLGSTVLVSNSLIATYAKCGDINSSLYTFEKMP-ERNDVSWNSIILGMGMHS 599

Query: 483 NMDIGILAADHIFH--LAPNQSGYYVLLSNIYAKAGR 517
             D  I+  D +    + P+   +  +LS   + AGR
Sbjct: 600 RTDEMIVLFDKMVASGIKPDHVTFTAILSAC-SHAGR 635



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 168/392 (42%), Gaps = 77/392 (19%)

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY-PCVLKACSGSNSLLVGLQI 152
           +V F N +IR Y  +  + DA+ VY  M   G   + + Y PC++KA  G   +  G QI
Sbjct: 72  SVSFANNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQI 131

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  V+K+G                          VL+D     V   NS++  Y + G  
Sbjct: 132 HGHVLKLG--------------------------VLDD-----VSVVNSLLTMYWKCGVV 160

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIA 272
           ++A+                                     +MF K+   +LVSWN MI+
Sbjct: 161 EDAV-------------------------------------QMFEKMPEVDLVSWNTMIS 183

Query: 273 VYANNSMPAEAVDLYLQMEVH-GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
            +  +     ++  +  M    GI PN ++  S + +C  L +L  GR+IH  V +  L 
Sbjct: 184 GFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLD 243

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-----WTSMISAYGMSGQGYDAVA 386
               L ++L++MY KCGS+  A  +F+ +  +D V      W  MIS Y  +G    A+ 
Sbjct: 244 VEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALL 303

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           LF KM++ G+ PD    VS+ S CS +  +  G+    ++  ++ L   I     L+D+ 
Sbjct: 304 LFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIF-KFGLKNNIRVETALLDMY 362

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
            + G +     + ++     N  +W ++++ C
Sbjct: 363 LKCGDMGTGLKIFRR-SQNHNLIMWSAVISNC 393



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 119/244 (48%), Gaps = 12/244 (4%)

Query: 243 NTSPENVLSVKEMFLKLDNKNLVSW-NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAIS 301
           N +P    S K +  K+     VS+ N +I  Y  +    +A+ +YL+M   G++     
Sbjct: 51  NYNPIQKWSSKPLSTKIQTFVSVSFANNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFR 110

Query: 302 -VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
               ++ A G L  +  GR+IH +V +  +  ++ + N+L+ MY KCG + +A  +F++M
Sbjct: 111 YFPCLIKAFGGLCDVYKGRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKM 170

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS-GLCPDSIAFVSVLSACSHAGLLEEG 419
              D+VSW +MIS +  S     ++  F  M+   G+ P+ +A VS + +CS    L  G
Sbjct: 171 PEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHG 230

Query: 420 RYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQM----PMEPNERIWGS 473
           R    ++    K    +E +  + L+++  + G ++ A ++   +     +  N  IW  
Sbjct: 231 REIHGVVV---KSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNV 287

Query: 474 LVAA 477
           +++ 
Sbjct: 288 MISG 291


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 202/590 (34%), Positives = 311/590 (52%), Gaps = 73/590 (12%)

Query: 24   TQYTLLS-GDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD 82
            T +TL+S   AC+ +      ++  K++HA  + N  L +  +  L  M  Y   G++ D
Sbjct: 432  TSFTLVSVAHACSHVRG---GVRLGKQVHAYTLRNGDLRTYTNNALVTM--YARLGRVND 486

Query: 83   TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
             + +F     K++V +N +I S   N  + +AL     M V G  PD  T   VL ACS 
Sbjct: 487  AKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQ 546

Query: 143  SNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNS 201
               L +G +IHC  ++ G L  N F G  LV MY  C   K+ R V + +  + V  WN+
Sbjct: 547  LERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNA 606

Query: 202  MVAGYAQNGRFDEALDVCREMES-LRIKPDADTMASLLPSVTNTSPENVLSVKE------ 254
            ++AGYA+N   D+AL +  EM S     P+A T AS+LP+        V S KE      
Sbjct: 607  LLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRC---KVFSDKEGIHGYI 663

Query: 255  ------------------------------MFLKLDNKNLVSWNVMIAV----------- 273
                                          +F +++ +++VSWN MI             
Sbjct: 664  VKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDAL 723

Query: 274  ----YANNSMPAEAVDLYLQMEVHG---IEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
                        +  D ++  E  G    +PN++++ +VLP C  L+AL  G++IH Y  
Sbjct: 724  NLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAV 783

Query: 327  RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
            ++KL  ++ + +ALVDMYAKCG L  A  VFDQM  ++V++W  +I AYGM G+G +A+ 
Sbjct: 784  KQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALE 843

Query: 387  LFSKMLMSG------LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA 440
            LF  M   G      + P+ + ++++ +ACSH+G+++EG + F  M   + + PR +H+A
Sbjct: 844  LFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYA 903

Query: 441  CLVDLLGRAGKVEEAYDLIKQMPMEPNE-RIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
            CLVDLLGR+G+V+EAY+LI  MP   N+   W SL+ AC ++ +++ G +AA H+F L P
Sbjct: 904  CLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEP 963

Query: 500  NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            N + +YVL+SNIY+ AG W     VRK M   G++K PG S +E  D+V 
Sbjct: 964  NVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVH 1013



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 147/586 (25%), Positives = 256/586 (43%), Gaps = 114/586 (19%)

Query: 48  KKLHAQIIINQHLHSNPS---IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           K++HA +   +  H+ PS   +   L+  YG CG +   R VFD+I +++ V +N +I +
Sbjct: 350 KQIHAHVF--KFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIAT 407

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG-SNSLLVGLQIHCSVVKVGLDY 163
                 +  +LH+++ M     DP  +T   V  ACS     + +G Q+H   ++ G D 
Sbjct: 408 LCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DL 466

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
             +  N LV MY + G + +A+ +      KD+V+WN++++  +QN RF+EAL     M 
Sbjct: 467 RTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMI 526

Query: 224 SLRIKPDADTMASLLPSVTNTSP------------------ENVL--------------- 250
              ++PD  T+AS+LP+ +                      EN                 
Sbjct: 527 VDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQP 586

Query: 251 -SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPA 308
              + +F  +  + +  WN ++A YA N    +A+ L+++M       PNA + ASVLPA
Sbjct: 587 KKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPA 646

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C           IH Y+ ++    +  ++NAL+DMY++ G +  ++T+F +M  +D+VSW
Sbjct: 647 CVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSW 706

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSG------------------LCPDSIAFVSVLSAC 410
            +MI+   + G+  DA+ L  +M                        P+S+  ++VL  C
Sbjct: 707 NTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGC 766

Query: 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL------------------------- 445
           +    L +G+       +Q KL   +   + LVD+                         
Sbjct: 767 AALAALGKGKEIHAYAVKQ-KLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITW 825

Query: 446 ------LGRAGKVEEAYDLIKQMP---------MEPNERIWGSLVAACCLYSNMDIGILA 490
                  G  GK EEA +L + M          + PNE  + ++ AAC     +D G+  
Sbjct: 826 NVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGL-- 883

Query: 491 ADHIFHLAPNQSG------YYVLLSNIYAKAGRWGDVKRVRKFMNS 530
             H+FH      G      +Y  L ++  ++GR   VK   + +N+
Sbjct: 884 --HLFHTMKASHGVEPRGDHYACLVDLLGRSGR---VKEAYELINT 924



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/427 (30%), Positives = 207/427 (48%), Gaps = 49/427 (11%)

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           L+RS  ++  + DA+  Y  M      PD + +P VLKA +  + L +G QIH  V K G
Sbjct: 301 LLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFG 360

Query: 161 L--DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
                ++   N LV MYGKCG L  AR+V +D+P +D V+WNSM+A   +   ++ +L +
Sbjct: 361 HAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHL 420

Query: 219 CREMESLRIKPDADTMASLLPSVTN----------------------TSPENVL------ 250
            R M S  + P + T+ S+  + ++                      T   N L      
Sbjct: 421 FRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTNNALVTMYAR 480

Query: 251 -----SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                  K +F   D K+LVSWN +I+  + N    EA+     M V G+ P+ +++ASV
Sbjct: 481 LGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASV 540

Query: 306 LPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           LPAC  L  L +GR+IH Y  R   L  N  +  ALVDMY  C    + R VFD +  + 
Sbjct: 541 LPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRT 600

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLM-SGLCPDSIAFVSVLSACSHAGLL--EEGRY 421
           V  W ++++ Y  +     A+ LF +M+  S  CP++  F SVL AC    +   +EG +
Sbjct: 601 VAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIH 660

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNER---IWGSLVAAC 478
            + I+   +     +++   L+D+  R G+VE +  +  +M    N+R    W +++  C
Sbjct: 661 GY-IVKRGFGKDKYVQN--ALMDMYSRMGRVEISKTIFGRM----NKRDIVSWNTMITGC 713

Query: 479 CLYSNMD 485
            +    D
Sbjct: 714 IVCGRYD 720



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 102/224 (45%), Gaps = 5/224 (2%)

Query: 239 PSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
           PS   T P  +         ++ ++   W  ++    ++S   +A+  Y  M      P+
Sbjct: 270 PSSLQTHPLTLTLPTPPPTTVERRSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPD 329

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQP--NLRLENALVDMYAKCGSLTEARTV 356
             +  +VL A   +  L LG++IH +V +    P  ++ + N+LV+MY KCG LT AR V
Sbjct: 330 NFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQV 389

Query: 357 FDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA-GL 415
           FD +  +D VSW SMI+      +   ++ LF  ML   + P S   VSV  ACSH  G 
Sbjct: 390 FDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGG 449

Query: 416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
           +  G+           L  R      LV +  R G+V +A  L 
Sbjct: 450 VRLGKQVHAYTLRNGDL--RTYTNNALVTMYARLGRVNDAKALF 491


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 176/529 (33%), Positives = 299/529 (56%), Gaps = 34/529 (6%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S+P     L+  Y   G       VF EI   ++V +N +I   V +     AL +   M
Sbjct: 221 SDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKM 280

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
             +   P  +T    LKAC+    + +G Q+H +++K+ ++ + F G GL+ MY KCG L
Sbjct: 281 GSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLL 340

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
           ++AR V + MP KDV+ WNS+++GY+  G   EA+ +   M    ++ +  T++++L S 
Sbjct: 341 QDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKST 400

Query: 242 TNTSPE------NVLSVK---------------------------EMFLKLDNKNLVSWN 268
             +         + +S+K                           ++F     ++LV++ 
Sbjct: 401 AGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYT 460

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
            MI  Y+   +  EA+ +YL+M+   I+P+A   +S+  AC +LSA   G++IH +V + 
Sbjct: 461 SMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKC 520

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
            L  ++   N+LV+MYAKCGS+ +A  +F+++  + +VSW++MI      G G  A+ LF
Sbjct: 521 GLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLF 580

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
            +ML +G+ P+ I  VSVLSAC+HAGL+ E R +F +M + + + P  EH+AC+VD+LGR
Sbjct: 581 YQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGR 640

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508
            G+++EA  L+K+MP + +  +WG+L+ A  ++ N+++G  AA+ +  L P +SG ++LL
Sbjct: 641 VGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILL 700

Query: 509 SNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           +NIYA  G W +V +VR+ M +  +KK PG S +E+ D+V    +  RS
Sbjct: 701 ANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRS 749



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 182/364 (50%), Gaps = 34/364 (9%)

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G  P+ ++   VL AC+G      G+++H  ++K+G D + F+ N L+ MY K GC + A
Sbjct: 183 GISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAA 242

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT-- 242
             V  ++P  D+V+WN+++AG   + + D AL +  +M S R+ P   T++S L +    
Sbjct: 243 IAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAI 302

Query: 243 ----------------NTSPENVLSV---------------KEMFLKLDNKNLVSWNVMI 271
                           +  P++ + V               + +F  +  K+++ WN +I
Sbjct: 303 GLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSII 362

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           + Y+N     EA+ L+  M   G+E N  +++++L +     A     ++H    +   Q
Sbjct: 363 SGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQ 422

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            +  + N+L+D Y KC  L +A  VF+    +D+V++TSMI+AY   G G +A+ ++ +M
Sbjct: 423 YDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRM 482

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
               + PD+  F S+ +AC++    E+G+    +   +  L+  +     LV++  + G 
Sbjct: 483 QDRDIKPDAFIFSSLFNACANLSAYEQGK-QIHVHVLKCGLLSDVFAGNSLVNMYAKCGS 541

Query: 452 VEEA 455
           +++A
Sbjct: 542 IDDA 545



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 172/366 (46%), Gaps = 36/366 (9%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +K  ++LH+ ++    +  +  +G+ L+  Y  CG + D R VFD +  K+V+ +N +I 
Sbjct: 305 VKLGRQLHSALM-KMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIIS 363

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            Y N     +A+ ++ NM   G + +  T   +LK+ +GS +     Q+H   +K G  Y
Sbjct: 364 GYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQY 423

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           + +  N L+  YGKC  L++A +V    P++D+V + SM+  Y+Q G  +EAL +   M+
Sbjct: 424 DGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQ 483

Query: 224 SLRIKPDADTMASLLPSVTNTSP-----------------ENVLSVKEM----------- 255
              IKPDA   +SL  +  N S                   +V +   +           
Sbjct: 484 DRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSID 543

Query: 256 -----FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
                F ++  + +VSW+ MI   A +    +A+ L+ QM  +GI PN I++ SVL AC 
Sbjct: 544 DASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACN 603

Query: 311 DLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSW 368
               +   R+    +E+   + P       +VD+  + G L EA  +  +M  Q     W
Sbjct: 604 HAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVW 663

Query: 369 TSMISA 374
            +++ A
Sbjct: 664 GALLGA 669



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 159/352 (45%), Gaps = 76/352 (21%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           YP +L   + S  +  G+ IH  ++++GL         LV +Y KC C + AR+++ D  
Sbjct: 53  YPKLLLQFTASKDVSSGMAIHARIIRLGLLGLRNR---LVNLYSKCQCFRVARKLVIDSS 109

Query: 193 SKDVVTWNSMVAGYAQNGRFDEAL------------------------------------ 216
             D+V+W+++++GY QNGR +EAL                                    
Sbjct: 110 EPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQ 169

Query: 217 ----DVCREMESLRIKPDADTMASLLPSVTNTSPENV-LSVKEMFLKLD-NKNLVSWNVM 270
                +  EM S  I P+  +++++L +      EN  + V    +KL  + +  S N +
Sbjct: 170 IHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANAL 229

Query: 271 IAVYANNSMPAEAVDLYLQ-------------------------------MEVHGIEPNA 299
           + +YA +  P  A+ ++ +                               M  + + P+ 
Sbjct: 230 LDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSM 289

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
            +++S L AC  +  + LGR++H  + +  ++P+  +   L+DMY+KCG L +AR VFD 
Sbjct: 290 FTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDL 349

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
           M  +DV+ W S+IS Y   G   +A++LF+ M   GL  +     ++L + +
Sbjct: 350 MPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTA 401



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 117/271 (43%), Gaps = 45/271 (16%)

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM---------------------- 290
           +++ +     +LVSW+ +I+ Y  N    EA+  Y +M                      
Sbjct: 102 RKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLT 161

Query: 291 -------EVH-----------GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
                  ++H           GI PN  S+++VL AC  L     G K+H Y+ +     
Sbjct: 162 RNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDS 221

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           +    NAL+DMYAK G    A  VF ++   D+VSW ++I+   +  +   A+ L  KM 
Sbjct: 222 DPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMG 281

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
              + P      S L AC+  GL++ GR     + +   + P       L+D+  + G +
Sbjct: 282 SYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKM-DMEPDSFVGVGLIDMYSKCGLL 340

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
           ++A  +   MP + +  +W S+++    YSN
Sbjct: 341 QDARMVFDLMPXK-DVIVWNSIISG---YSN 367



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 46/190 (24%)

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA---------------- 384
           V++Y+KC     AR +       D+VSW+++IS Y  +G+G +A                
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 385 ------------------------VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
                                   VAL ++M+ +G+ P+  +  +VL+AC  AG LE+  
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNAC--AG-LEDEN 205

Query: 421 YYFKIMTEQYKLVPRIEHFA--CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           Y  K+     KL    + F+   L+D+  ++G  E A  +  ++P +P+   W +++A C
Sbjct: 206 YGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIP-KPDIVSWNAVIAGC 264

Query: 479 CLYSNMDIGI 488
            L+   D+ +
Sbjct: 265 VLHEKNDLAL 274


>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 176/500 (35%), Positives = 287/500 (57%), Gaps = 11/500 (2%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +K+LK +HA+++I   + S+  +  KL+R Y   G       VFDEIT  N   +  LI 
Sbjct: 15  LKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIH 74

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            YV N  Y +A  ++  M         +T   VLKA +       G  ++        + 
Sbjct: 75  GYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFAFDEMCEK 134

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           ++ + N +++ YG    +  AR+  + MP ++VV+W SM+ GY + G   EA  +    +
Sbjct: 135 DIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVL---FD 191

Query: 224 SLRIKPDA--DTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
           S+ +K  A  + M S    + + +       + +F ++  KNLV+W+ MI  YA N  P 
Sbjct: 192 SMPVKDLASWNVMVSGYMDIGDYTN----GARCLFDQMPMKNLVTWSTMIGGYARNGQPL 247

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI-HRYVERKKLQPNLRLENAL 340
           +A++L+ + +   I+P+   +  ++ AC  L  +     I H YV    L  +LR+  +L
Sbjct: 248 KALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVG-PSLLSDLRVFTSL 306

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +DMYAKCGS+ +A  +F+    +D++ +++MI+A    G G DA+ LF KM  + + PDS
Sbjct: 307 IDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDS 366

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           + F+ VL+AC+H GL++EGR YFK MTE++ + P  +H+AC+VDLLGR G +EEAY+LI+
Sbjct: 367 VTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIR 426

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD 520
            MP+ P+  +WG+L+AAC ++ N+ +  +AA  +F + P+ SG Y+LLSNIYA AGRWG 
Sbjct: 427 NMPIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGS 486

Query: 521 VKRVRKFMNSKGIKKMPGAS 540
           V +VR  +    ++K  G+S
Sbjct: 487 VAKVRAKIREHRVRKNRGSS 506


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 169/488 (34%), Positives = 275/488 (56%), Gaps = 42/488 (8%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S+P +   LM  Y ACG++   R+VFDE++ ++VV +N +I  Y    L  +A  +++ M
Sbjct: 147 SDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEM 206

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK--VGLDYNLFNGNGLVAMYGKCG 179
                 PD      ++ AC  + ++     I+  +++  V +D +L     LV MY   G
Sbjct: 207 KDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTA--LVTMYAGAG 264

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
           C+  A      M  +++    +MV+GY++ GR D+A                        
Sbjct: 265 CMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDA------------------------ 300

Query: 240 SVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                        + +F + + K+LV W  MI+ YA +  P EA+ ++ +M   GI+P+ 
Sbjct: 301 -------------RVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDV 347

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           +++ SV+ AC +L  L   + +HRY     L+  L ++NAL++MYAKCG L  AR VF++
Sbjct: 348 VTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEK 407

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
           M  ++VVSW+SMI+A+ M G+  D+++LF++M    + P+ + FV VL  CSH+GL+EEG
Sbjct: 408 MPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEG 467

Query: 420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
           +  F  MT++Y + P+IEH+ C+VDL GRA  + EA ++I+ MPM PN  IWGSL++AC 
Sbjct: 468 KKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACR 527

Query: 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA 539
           ++  +++G LAA  I  L P+  G  VL+SNIYA+  RW  V+ +R  M  K + K  G 
Sbjct: 528 VHGELELGELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGL 587

Query: 540 S-VEMNDQ 546
           S +++N +
Sbjct: 588 SRIDLNGK 595



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 151/318 (47%), Gaps = 26/318 (8%)

Query: 21  VLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQM 80
           +L+   T+ +G  C D+  ++      +K+  +         N  +   ++  Y   G++
Sbjct: 252 LLTALVTMYAGAGCMDMAMEF-----FRKMSVR---------NLFVSTAMVSGYSKAGRL 297

Query: 81  VDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC 140
            D R +FD+   K++V +  +I +Y  +    +AL V++ M   G  PD  T   V+ AC
Sbjct: 298 DDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISAC 357

Query: 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWN 200
               +L     +H      GL+  L   N L+ MY KCG L  AR V   MP+++VV+W+
Sbjct: 358 VNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWS 417

Query: 201 SMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD 260
           SM+  +A +G   ++L +  +M+   ++P+  T   +L   +++    V   K++F  + 
Sbjct: 418 SMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGL--VEEGKKIFASMT 475

Query: 261 NK-----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           ++      +  +  M+ ++   ++  EA+++   +E   + PN +   S++ AC     L
Sbjct: 476 DEYNITPKIEHYGCMVDLFGRANLLREALEV---IESMPMAPNVVIWGSLMSACRVHGEL 532

Query: 316 LLGRKIHRYVERKKLQPN 333
            LG    + +   KL+P+
Sbjct: 533 ELGELAAKRI--LKLEPD 548



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 1/198 (0%)

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           + +N ++   + +  P   +  Y ++   G   + IS   +L A   +SAL  G ++H +
Sbjct: 80  IVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHGF 139

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
             +     +  +E  L+DMYA CG +  AR VFD+M  +DVV+W +MI  Y   G   +A
Sbjct: 140 AFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEA 199

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
             LF +M  S + PD +   +++SAC   G +   R  +  + E   +         LV 
Sbjct: 200 FKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIEN-DVRMDTHLLTALVT 258

Query: 445 LLGRAGKVEEAYDLIKQM 462
           +   AG ++ A +  ++M
Sbjct: 259 MYAGAGCMDMAMEFFRKM 276


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 168/472 (35%), Positives = 266/472 (56%), Gaps = 36/472 (7%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M + G + +   Y  VL  C    ++  G ++H  ++K   +  ++    L+ +Y KC C
Sbjct: 468 MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 527

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           L +ARRVL++MP ++VV+W +M++GY+Q G   EAL +  EM      P+  T A++L S
Sbjct: 528 LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 587

Query: 241 VTNTS---------------------------------PENVLSVKEMFLKLDNKNLVSW 267
            T++S                                    +   + +F  L  +++VS 
Sbjct: 588 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 647

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
             +I+ YA   +  EA+DL+ +++  G+  N ++ ASVL A   L+AL  GR++H +V R
Sbjct: 648 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 707

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
            KL   + L+N+L+DMY+KCGSLT +R +FD M  + V+SW +M+  Y   G G +AV L
Sbjct: 708 AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVEL 767

Query: 388 FSKMLMSG-LCPDSIAFVSVLSACSHAGLLEEG-RYYFKIMTEQYKLVPRIEHFACLVDL 445
           F  M     + PDS+ F++VLS CSH G+ + G   +++++ ++    P IEH+ C+VDL
Sbjct: 768 FKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDL 827

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
            GRAG+VEEA++ IK+MP EP   IWGSL+ AC ++ N+ IG   A  +  +    +G Y
Sbjct: 828 FGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNY 887

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           V+LSN+YA AGRW DV+ VR+ M  K + K PG S +E++  +       RS
Sbjct: 888 VILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRS 939



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 185/370 (50%), Gaps = 42/370 (11%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLK--LMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           I+  +++HA +I   +    P + L+  L+  Y  C  + D R V DE+  +NVV +  +
Sbjct: 493 IREGQRVHAHMIKTCY---EPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAM 549

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           I  Y       +ALH++  M + G  P+ +T+  VL +C+ S+   +G QIH  V+K   
Sbjct: 550 ISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSF 609

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           + ++F G+ L+ MY K G + EARRV + +P +DVV+  ++++GYAQ G  +EALD+ R 
Sbjct: 610 ESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRR 669

Query: 222 MESLRIKPDADTMASLLPSVTNTSP--------ENVLSVK-------------------- 253
           ++   ++ +  T AS+L +++  +          +VL  K                    
Sbjct: 670 LQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGS 729

Query: 254 -----EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY-LQMEVHGIEPNAISVASVLP 307
                 +F  +  + ++SWN M+  Y+ + +  EAV+L+ L  E + ++P++++  +VL 
Sbjct: 730 LTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLS 789

Query: 308 ACGDLSALLLGRKIHRYVERKK--LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
            C        G +I   +  +K   +P +     +VD++ + G + EA     +M  +  
Sbjct: 790 GCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPT 849

Query: 366 VS-WTSMISA 374
            + W S++ A
Sbjct: 850 AAIWGSLLGA 859



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 97/176 (55%), Gaps = 1/176 (0%)

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
           L+M + G+E       SVL  C   +A+  G+++H ++ +   +P + L   L+ +Y KC
Sbjct: 466 LEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKC 525

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
             L +AR V D+M  ++VVSWT+MIS Y   G   +A+ LF +MLMSG  P+   F +VL
Sbjct: 526 RCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVL 585

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           ++C+ +   + GR    ++ +       I   + L+D+  +AGK+ EA  +   +P
Sbjct: 586 TSCTSSSGFQLGRQIHSLVIKT-SFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 640


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 177/512 (34%), Positives = 283/512 (55%), Gaps = 34/512 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  YG CG +     VF+E   KN V +N +I         +DAL+ ++ M   G  P+
Sbjct: 302 LVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPN 361

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   +L           G +IH   +++G + ++F  N L+ MY K G   EA  + +
Sbjct: 362 SVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFH 421

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS---P 246
           ++  +++V+WN+M+A YA N    EA+    +M+     P+A T  ++LP+        P
Sbjct: 422 NLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGP 481

Query: 247 ENVL-----------------SVKEMFLK------------LDNKNLVSWNVMIAVYANN 277
              +                 S+ +M+ K               K+ VS+N++I  Y+  
Sbjct: 482 GKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSRKDEVSYNILIIGYSET 541

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
               ++++L+ +M + G +P+ +S   V+ AC +L+AL  G+++H    R  L  +L + 
Sbjct: 542 DDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVS 601

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
           N+L+D Y KCG +  A  +F+Q+  +DV SW +MI  YGM G+   A+++F  M    + 
Sbjct: 602 NSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQ 661

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
            D +++++VLSACSH GL+E G  YF  M  Q +L P   H+ C+VDLLGRAG VEEA  
Sbjct: 662 YDLVSYIAVLSACSHGGLVERGWQYFSEMLAQ-RLEPTEMHYTCMVDLLGRAGFVEEAAK 720

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
           LI+Q+P+ P+  IWG+L+ AC +Y N+++G  AA+H+F L P   GYY+LLSNIYA+ GR
Sbjct: 721 LIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGR 780

Query: 518 WGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           W +  ++R+ M S+G KK PG S V++ DQV 
Sbjct: 781 WDEANKIRELMKSRGAKKNPGCSWVQIYDQVH 812



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/411 (29%), Positives = 210/411 (51%), Gaps = 39/411 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--KNVVFFNVLIRSY 105
           K++HA  I+N  L  + S+   L+  Y           +F++     +    +N LIR++
Sbjct: 74  KQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQNCRTAFLWNTLIRAH 133

Query: 106 VNNY-LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
              +   +D    Y  M   G   D +T+P VLK CS S  +  G+++H  V K+G D +
Sbjct: 134 SIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTD 193

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
           ++ GN L+ +YG CG L +ARR+ ++MP +DVV+WN+++   + NG + EA +    M  
Sbjct: 194 VYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWM-I 252

Query: 225 LR--IKPDADTMASLLPSVTNTSPE---------------------------------NV 249
           LR  IKP+  ++ SLLP       E                                 +V
Sbjct: 253 LRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSV 312

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            ++ ++F +   KN VSWN +I   A      +A++ +  M   G +PN+++++S+LP  
Sbjct: 313 KALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVL 372

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
            +L     G++IH +  R   + ++ + N+L+DMYAK G  TEA T+F  +  +++VSW 
Sbjct: 373 VELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWN 432

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           +MI+ Y ++    +A+    +M  +G CP+++ F +VL AC+  G L  G+
Sbjct: 433 AMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGK 483



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 159/390 (40%), Gaps = 52/390 (13%)

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVG-------------LDYNLFNGNG-LVAMYG 176
           Y +  +L  CS   SLL   Q+H   +  G             L+Y  F   G   +++ 
Sbjct: 55  YIHINLLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFN 114

Query: 177 KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF-------------------DEALD 217
           +         + N +     + WN    G+    R                     ++ D
Sbjct: 115 QTFQNCRTAFLWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFD 174

Query: 218 VCREME------SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
           +C+ ME       L    D     +LL    N    N    + +F ++  +++VSWN +I
Sbjct: 175 ICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLN--DARRLFDEMPERDVVSWNTII 232

Query: 272 AVYANNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
            + + N    EA + Y  M +   I+PN +SV S+LP    L    + R+IH Y  +  L
Sbjct: 233 GLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGL 292

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
              +   NALVD Y KCGS+     VF++   ++ VSW S+I+     G+ +DA+  F  
Sbjct: 293 DSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRM 352

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YYFKIMTEQYKLVPRIEHFACLVDLL 446
           M+ +G  P+S+   S+L         + G+    +  ++ TE    +        L+D+ 
Sbjct: 353 MIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIAN-----SLIDMY 407

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
            ++G   EA  +   +    N   W +++A
Sbjct: 408 AKSGHSTEASTIFHNLDRR-NIVSWNAMIA 436


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 170/476 (35%), Positives = 261/476 (54%), Gaps = 42/476 (8%)

Query: 80  MVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA 139
           +V  R + + +T+   V +N +I  YV+   Y +A  + + M   G   D YTY  V+ A
Sbjct: 224 LVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISA 283

Query: 140 CSGSNSLLVGLQIHC----SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
            S +    +G Q+H     +VV+    + L   N L+ +Y +CG L EARRV + MP KD
Sbjct: 284 ASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKD 343

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM 255
           +V+WN++++G     R +EA  + REM                                 
Sbjct: 344 LVSWNAILSGCVNARRIEEANSIFREMPV------------------------------- 372

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
                 ++L++W VMI+  A N    E + L+ QM++ G+EP   + A  + +C  L +L
Sbjct: 373 ------RSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSL 426

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             G+++H  + +     +L + NAL+ MY++CG +  A TVF  M   D VSW +MI+A 
Sbjct: 427 DNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAAL 486

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
              G G  A+ L+ KML   + PD I F+++LSACSHAGL++EGR+YF  M   Y + P 
Sbjct: 487 AQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPE 546

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
            +H++ L+DLL RAG   EA ++ + MP EP   IW +L+A C ++ NM++GI AAD + 
Sbjct: 547 EDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLL 606

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            L P Q G Y+ LSN+YA  G+W +V RVRK M  +G+KK PG S +E+ + V + 
Sbjct: 607 ELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVF 662



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 156/361 (43%), Gaps = 53/361 (14%)

Query: 48  KKLHAQI---IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           +++HA +   ++    H   S+   L+  Y  CG++V+ R VFD++  K++V +N ++  
Sbjct: 294 RQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSG 353

Query: 105 YVN-------------------------------NYLYYDALHVYKNMSVHGFDPDCYTY 133
            VN                               N    + L ++  M + G +P  Y Y
Sbjct: 354 CVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAY 413

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
              + +CS   SL  G Q+H  ++++G D +L  GN L+ MY +CG ++ A  V   MP 
Sbjct: 414 AGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPY 473

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK 253
            D V+WN+M+A  AQ+G   +A+ +  +M    I PD  T  ++L + ++        VK
Sbjct: 474 VDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAG-----LVK 528

Query: 254 EMFLKLDNKNLV--------SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
           E     D   +          ++ +I +     M +EA ++   M     EP A    ++
Sbjct: 529 EGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMP---FEPGAPIWEAL 585

Query: 306 LPACGDLSALLLG-RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           L  C     + LG +   R +E    Q    +  +L +MYA  G   E   V   MR + 
Sbjct: 586 LAGCWIHGNMELGIQAADRLLELMPQQDGTYI--SLSNMYAALGQWDEVARVRKLMRERG 643

Query: 365 V 365
           V
Sbjct: 644 V 644



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 153/399 (38%), Gaps = 90/399 (22%)

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H  ++  G        N L+  Y K   +  AR + + +P  D+V   +M++ Y+  G 
Sbjct: 18  VHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGN 77

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
                                    L   + N +P ++            ++ VS+N MI
Sbjct: 78  I-----------------------KLAHQLFNATPMSI------------RDTVSYNAMI 102

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA----------CGDL--------- 312
             ++++     A+ L++QM+  G  P+  + +SVL A          C  L         
Sbjct: 103 TAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGA 162

Query: 313 ------------------SALLLGRKIHRYVERK---KLQPNLRLENA---LVDMYAKCG 348
                             S+ L+   +     RK   +  P  R E A   ++  Y +  
Sbjct: 163 LSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRND 222

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
            L  AR + + M     V+W +MIS Y   G   +A  L  +M   G+  D   + SV+S
Sbjct: 223 DLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVIS 282

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA-----CLVDLLGRAGKVEEAYDLIKQMP 463
           A S+AGL   GR     +     +V    HF       L+ L  R GK+ EA  +  +MP
Sbjct: 283 AASNAGLFNIGRQVHAYVLR--TVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMP 340

Query: 464 MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS 502
           ++ +   W ++++ C     ++     A+ IF   P +S
Sbjct: 341 VK-DLVSWNAILSGCVNARRIE----EANSIFREMPVRS 374



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 2/104 (1%)

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             LS     R +H ++     +P   + N L+D Y K  ++  AR +FD++   D+V+ T
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
           +M+SAY  +G    A  LF+   MS    D++++ ++++A SH+
Sbjct: 67  TMLSAYSAAGNIKLAHQLFNATPMS--IRDTVSYNAMITAFSHS 108


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 183/568 (32%), Positives = 302/568 (53%), Gaps = 67/568 (11%)

Query: 46  TLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH-VFDEITNKNVVFFNVLIRS 104
           T K+LHA +I  Q LH++P +   ++R+Y      +   H VF++I    +V +N +IR 
Sbjct: 32  TSKELHAHLIRTQ-LHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRG 90

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
              +    +A+H+Y  M   G   +  T   + KAC+  + ++ G +IH   +K+G +  
Sbjct: 91  LSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESY 150

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
           LF  N L+ MY  CG L  A+++ + M  +D+V+WN+++ GY+Q  ++ E L +   M +
Sbjct: 151 LFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTA 210

Query: 225 LRIKPDADTMASLL------------PSVTNTSPENVLSV-------------------- 252
             IK DA TM  ++             S+     EN L +                    
Sbjct: 211 ANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAEL 270

Query: 253 -KEMFLKLDNKNLVSWNV-------------------------------MIAVYANNSMP 280
            + +F ++  +N+VSWN                                MI  Y+  S  
Sbjct: 271 AQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQF 330

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
           ++AV L+ +M    ++P+ ++VASVL AC  L  L +G  +H Y+ R  +Q ++ + N+L
Sbjct: 331 SDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSL 390

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +DMY KCG + +A  VF +M+ +D VSWTS+IS   ++G    A+ LFS+ML  G+ P  
Sbjct: 391 IDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTH 450

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
             FV +L AC+HAGL+ +G  YF+ M   + LVP ++H+ C+VDLL R+G +++AY+ IK
Sbjct: 451 GTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIK 510

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD 520
           +MP+ P+  +W  L++AC L+ N+ +  +A   +  L P  SG YVLLSN YA   RW D
Sbjct: 511 KMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDD 570

Query: 521 VKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
             ++R+ M    ++K  G +S+E++  V
Sbjct: 571 AMKMRELMEDSDVQKPSGSSSIEVDGMV 598



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 161/345 (46%), Gaps = 11/345 (3%)

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT---SPEN 248
           P+  + T +SM     +  +   + D  +E+ +  I+    T   L+  V  +   S  N
Sbjct: 6   PNTRLFTSSSMAPKSGRVSKNSISTDTSKELHAHLIRTQLHTDPFLMSDVIRSYSLSSTN 65

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           +     +F +++   LV WN MI   + +  P EA+ +Y +M   GI  N +++  +  A
Sbjct: 66  LHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKA 125

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  +S ++ GRKIH +  +   +  L + NAL+ MYA CG L  A+ +FD M  +D+VSW
Sbjct: 126 CARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSW 185

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            ++I  Y    +  + + LF  M  + +  D++  V ++ ACSH G  E      K + E
Sbjct: 186 NTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKE 245

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
              L   +     L+D+ GR    E A  +  +M  E N   W +LV       N+    
Sbjct: 246 N-NLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMR-ERNIVSWNALVMGHAKVGNLT--- 300

Query: 489 LAADHIFHLAPNQSGY-YVLLSNIYAKAGRWGD-VKRVRKFMNSK 531
            AA  +F   P +    +  +   Y++A ++ D VK  ++ M +K
Sbjct: 301 -AARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAK 344



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 117/240 (48%), Gaps = 4/240 (1%)

Query: 1   MKAVVLLCRHFSTTKPVQALVLSTQYTLLSGDA--CNDILDKYPDIKTLKKLHAQIIINQ 58
           M  ++L C H    +   ++V   +   L  D    N ++D Y   ++L +L AQ + ++
Sbjct: 220 MVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGR-RSLAEL-AQGVFDR 277

Query: 59  HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVY 118
               N      L+  +   G +   R +FD +  ++V+ +  +I  Y     + DA+ ++
Sbjct: 278 MRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLF 337

Query: 119 KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC 178
           + M      PD  T   VL AC+    L VG  +H  + + G+  +++ GN L+ MY KC
Sbjct: 338 QEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKC 397

Query: 179 GCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238
           G +++A  V + M  KD V+W S+++G A NG  + ALD+  +M    ++P   T   +L
Sbjct: 398 GMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGIL 457


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 176/521 (33%), Positives = 276/521 (52%), Gaps = 34/521 (6%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y   G M+D R VFD I  +N V +  +I  Y    + ++A  ++  M    
Sbjct: 150 VGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREE 209

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
              D + Y  VL A +  + +  G QIHC  +K GL      GN LV MYGKCGCL +A 
Sbjct: 210 GAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDAL 269

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           +       KD +TW++M+ GYAQ G   EAL++   M     KP   T   ++ + ++  
Sbjct: 270 KTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIG 329

Query: 246 P---------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIA 272
                                              +++  ++ F  L   ++V W  MI+
Sbjct: 330 ALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMIS 389

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            YA N     A+ LY +M++  I P+ +++ASVL AC  L+AL  G++IH    +     
Sbjct: 390 GYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSL 449

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
            + + +AL  MYAKCGSL +   VF +M  +D+++W +MIS    +G+G  A+ LF ++ 
Sbjct: 450 EVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELR 509

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
                PD + FV+VLSACSH GL+E G+ YF++M +++ +VPR+EH+AC+VD+L RAGK+
Sbjct: 510 HGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKL 569

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
            E  + I+   ++    +W  L+ AC  Y N ++G  A + +  L   +S  Y+LLS+IY
Sbjct: 570 HETKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIY 629

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
              GR  DV+RVR+ M  +G+ K PG S +E+  QV +  +
Sbjct: 630 TALGRSDDVERVRRLMKLRGVNKEPGCSWIELKSQVHVFVV 670



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/475 (28%), Positives = 231/475 (48%), Gaps = 42/475 (8%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           +  D++  K +HAQ++      S+  +   L+  Y  CG +V  + VF+ ITNK+VV +N
Sbjct: 22  RQKDLQKGKAIHAQLLRTGSF-SSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWN 80

Query: 100 VLIRSYVNNYL--YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
            LI  Y       Y   + +++ M      P+ +T+  V  A S S     GLQ H   +
Sbjct: 81  CLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAI 140

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           K    Y++F G+ L+ MY K GC+ +AR+V + +P ++ V+W ++++GYA      EA +
Sbjct: 141 KTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWE 200

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSPENV--------LSVKEMFLKL---------- 259
           +   M       D     S+L ++  T P+ V        L++K   L +          
Sbjct: 201 LFXLMRREEGAHDKFIYTSVLSAL--TVPDLVHYGKQIHCLALKNGLLSIASVGNALVTM 258

Query: 260 -----------------DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
                             +K+ ++W+ MI  YA      EA++L+  M ++G +P+  + 
Sbjct: 259 YGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTF 318

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
             V+ AC D+ AL  G++IH Y  +   +  +    ALVDMYAKCGSL +AR  FD ++ 
Sbjct: 319 VGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKE 378

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
            D+V WTSMIS Y  +G+   A+ L+ +M M  + P  +   SVL ACS    LE+G+  
Sbjct: 379 PDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGK-Q 437

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
               T +Y     +   + L  +  + G +E+   + ++MP   +   W ++++ 
Sbjct: 438 IHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMP-SRDIMTWNAMISG 491



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 186/400 (46%), Gaps = 53/400 (13%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M+++   P   ++  +L  C+    L  G  IH  +++ G   +++  N LV +Y KCG 
Sbjct: 1   MNLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGS 60

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGR--FDEALDVCREMESLRIKPDADTMASLL 238
           + +A+ V   + +KDVV+WN ++ GY+Q G   +   +++ + M +    P+  T + + 
Sbjct: 61  IVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVF 120

Query: 239 PSVTNTSPEN----------------------------------VLSVKEMFLKLDNKNL 264
            + + +SPE                                   +L  +++F  +  +N 
Sbjct: 121 TAAS-SSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNT 179

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           VSW  +I+ YA   M  EA +L+  M       +     SVL A      +  G++IH  
Sbjct: 180 VSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCL 239

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
             +  L     + NALV MY KCG L +A   F+    +D ++W++MI+ Y  +G  ++A
Sbjct: 240 ALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEA 299

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YYFKIMTEQYKLVPRIEHFA 440
           + LF  M ++G  P    FV V++ACS  G LEEG+    Y  K   E      +I    
Sbjct: 300 LNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYE-----CQIYFMT 354

Query: 441 CLVDLLGRAGKVEEA---YDLIKQMPMEPNERIWGSLVAA 477
            LVD+  + G + +A   +D +K    EP+  +W S+++ 
Sbjct: 355 ALVDMYAKCGSLVDARKGFDYLK----EPDIVLWTSMISG 390



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 169/351 (48%), Gaps = 34/351 (9%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           PD+    K    + +   L S  S+G  L+  YG CG + D    F+   +K+ + ++ +
Sbjct: 227 PDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAM 286

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           I  Y      ++AL+++ NM ++G  P  +T+  V+ ACS   +L  G QIH   +K G 
Sbjct: 287 ITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGY 346

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           +  ++    LV MY KCG L +AR+  + +   D+V W SM++GYAQNG  + AL +   
Sbjct: 347 ECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCR 406

Query: 222 MESLRIKPDADTMASLL------------------------------PSVTNTSPENVLS 251
           M+  RI P   TMAS+L                               S  +T      S
Sbjct: 407 MQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGS 466

Query: 252 VKE---MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           +++   +F ++ ++++++WN MI+  + N    +A++L+ ++     +P+ ++  +VL A
Sbjct: 467 LEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSA 526

Query: 309 CGDLSALLLGRKIHR-YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
           C  +  +  G+   R  ++   + P +     +VD+ ++ G L E +   +
Sbjct: 527 CSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKLHETKEFIE 577



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 132/317 (41%), Gaps = 46/317 (14%)

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA--VDLYLQMEVHGIEPNAISVASV 305
           +++  K +F  + NK++VSWN +I  Y+       +  ++L+ +M      PN  + + V
Sbjct: 60  SIVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGV 119

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
             A         G + H    +     ++ + ++L++MY K G + +AR VFD +  ++ 
Sbjct: 120 FTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNT 179

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY---- 421
           VSW ++IS Y M    ++A  LF  M       D   + SVLSA +   L+  G+     
Sbjct: 180 VSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCL 239

Query: 422 -----YFKIMTEQYKLVPRIEHFACLVDLL---------------------GRAGKVEEA 455
                   I +    LV       CL D L                      +AG   EA
Sbjct: 240 ALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEA 299

Query: 456 YDLIKQMPM---EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY----YVL- 507
            +L   M +   +P+E  +  ++ AC      DIG L      H    ++GY    Y + 
Sbjct: 300 LNLFYNMHLNGNKPSEFTFVGVINACS-----DIGALEEGKQIHGYSLKAGYECQIYFMT 354

Query: 508 -LSNIYAKAGRWGDVKR 523
            L ++YAK G   D ++
Sbjct: 355 ALVDMYAKCGSLVDARK 371


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 170/508 (33%), Positives = 274/508 (53%), Gaps = 33/508 (6%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y   G++ + R VF E+  +NVV +  +I   V      +AL  +  M    
Sbjct: 153 VGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSR 212

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            + D YT+   LKAC+ S +L  G +IH   +K G D + F  N L  MY KCG L+   
Sbjct: 213 VEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGL 272

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT- 244
            +   M  +DVV+W +++    Q G+ + A+     M    + P+  T A+++    N  
Sbjct: 273 TLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLA 332

Query: 245 ---------------------SPENVL-----------SVKEMFLKLDNKNLVSWNVMIA 272
                                S EN +           S   +F ++  +++VSW+ +IA
Sbjct: 333 RIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIA 392

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y+     +EA +L   M + G +P   ++ASVL ACG+++ L  G+++H YV    L+ 
Sbjct: 393 GYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEH 452

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
              + +AL++MY KCGS+ EA  +FD     D+VSWT+MI+ Y   G   + + LF K+ 
Sbjct: 453 TAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIP 512

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
             GL PDS+ F+ VLSACSHAGL++ G  YF  M+++Y++ P  EH+ C++DLL RAG++
Sbjct: 513 RVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRL 572

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
            +A  +I+ MP   ++ +W +L+ AC ++ +++ G   A+ I  L PN +G ++ L+NIY
Sbjct: 573 SDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIY 632

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           A  G+W +   +RK M SKG+ K PG S
Sbjct: 633 ASKGKWREAADIRKLMKSKGVIKEPGWS 660



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 143/563 (25%), Positives = 258/563 (45%), Gaps = 83/563 (14%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSI--GLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           D++ L++ +  +  N H  S   +    K ++     G + + R +FD+++ K+ + +  
Sbjct: 26  DLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTT 85

Query: 101 LIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
           LI  YVN     +AL ++KNM V  G   D +      KAC  ++ +  G  +H   VK 
Sbjct: 86  LISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKT 145

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           GL  ++F G+ L+ MY K G + E RRV ++MP ++VV+W +++ G  + G   EAL   
Sbjct: 146 GLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYF 205

Query: 220 REMESLRIKPDADTMASLLPSVTNTSP----------------------ENVLSVK---- 253
            EM   R++ D+ T A  L +  ++                         N L+      
Sbjct: 206 SEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKC 265

Query: 254 -------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
                   +F K+  +++VSW  +I           AV  +++M    + PN  + A+V+
Sbjct: 266 GKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVI 325

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
             C +L+ +  G ++H  +    L  +L +EN+++ MYAKCG LT +  +F +M  +D+V
Sbjct: 326 SGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIV 385

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YY 422
           SW+++I+ Y   G   +A  L S M M G  P   A  SVLSAC +  +LE G+    Y 
Sbjct: 386 SWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYV 445

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA--------------------------- 455
             I  E   +V      + L+++  + G +EEA                           
Sbjct: 446 LSIGLEHTAMV-----LSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGY 500

Query: 456 ----YDLIKQMP---MEPNERIWGSLVAACCLYSNMDIGIL---AADHIFHLAPNQSGYY 505
                DL +++P   + P+   +  +++AC     +D+G     A    + ++P++  Y 
Sbjct: 501 SREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYG 560

Query: 506 VLLSNIYAKAGRWGDVKRVRKFM 528
            ++ ++  +AGR  D + + + M
Sbjct: 561 CMI-DLLCRAGRLSDAEHMIEAM 582



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 162/330 (49%), Gaps = 16/330 (4%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           I+  ++LHA +I++  L ++ S+   +M  Y  CGQ+  +  +F E+T +++V ++ +I 
Sbjct: 334 IEWGEQLHA-LILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIA 392

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            Y       +A  +   M + G  P  +    VL AC     L  G Q+H  V+ +GL++
Sbjct: 393 GYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEH 452

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
                + L+ MY KCG ++EA R+ +   + D+V+W +M+ GYA++G   E +D+  ++ 
Sbjct: 453 TAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIP 512

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS-----WNVMIAVYANNS 278
            + ++PD+ T   +L + ++    + L  +  F  +  K  +S     +  MI +     
Sbjct: 513 RVGLRPDSVTFIGVLSACSHAGLVD-LGFR-YFNAMSKKYQISPSKEHYGCMIDLLCRAG 570

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER-KKLQPNLRLE 337
             ++A  +   M  H    + +  +++L AC     +  GR   R  ER  +L+PN    
Sbjct: 571 RLSDAEHMIEAMPFH---RDDVVWSTLLRACRVHGDVERGR---RTAERILQLEPNCAGT 624

Query: 338 N-ALVDMYAKCGSLTEARTVFDQMRCQDVV 366
           +  L ++YA  G   EA  +   M+ + V+
Sbjct: 625 HITLANIYASKGKWREAADIRKLMKSKGVI 654


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 176/528 (33%), Positives = 282/528 (53%), Gaps = 36/528 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           KK+H   +       +  +   L+  Y   G +     VF ++  K+V  +N +I  +  
Sbjct: 141 KKVHC-CVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQ 199

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N     AL V   M   G   D  T   +L  C+ S+ ++ G+ IH  V+K GLD ++F 
Sbjct: 200 NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFV 259

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY K G L++A+ V + M  +D+V+WNS++A Y QN     AL   + M+   I
Sbjct: 260 SNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGI 319

Query: 228 KPDADTMASLLPSVTNTSPENVLS----------------------------------VK 253
           +PD  T+ SL    +  S + +                                      
Sbjct: 320 RPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAH 379

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDL 312
            +F +L  K+ +SWN ++  Y  N + +EA+D Y  M E     PN  +  S++PA   +
Sbjct: 380 TVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHV 439

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
            AL  G KIH  + +  L  ++ +   L+D+Y KCG L +A ++F ++     V W ++I
Sbjct: 440 GALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAII 499

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           ++ G+ G+G +A+ LF  ML   +  D I FVS+LSACSH+GL++EG+  F IM ++Y +
Sbjct: 500 ASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGI 559

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAAD 492
            P ++H+ C+VDLLGRAG +E+AY+L++ MP++P+  IWG+L++AC +Y N ++G LA+D
Sbjct: 560 KPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASD 619

Query: 493 HIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            +  +     GYYVLLSNIYA   +W  V +VR     +G++K PG S
Sbjct: 620 RLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWS 667



 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 163/538 (30%), Positives = 270/538 (50%), Gaps = 65/538 (12%)

Query: 11  FSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKL 70
            S  K V     S   +L      N + +   ++   KKLHA +++      N  +  KL
Sbjct: 2   LSLLKSVSKFYKSATTSLHKDADFNALFNSCVNVNATKKLHALLLVFGK-SQNIVLSTKL 60

Query: 71  MRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALH-VYKNMSVHG---F 126
           +  Y   G +  +R  FD I  KN+  +N +I +YV    Y++A++ V +  S+ G    
Sbjct: 61  INLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHL 120

Query: 127 DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR 186
            PD YT+P +LKAC    SL+ G ++HC V K+G + ++F    LV +Y + G L  A +
Sbjct: 121 RPDFYTFPPILKACV---SLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHK 177

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP 246
           V  DMP KDV +WN+M++G+ QNG    AL V   M+   +K D  T+AS+LP    +  
Sbjct: 178 VFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDD 237

Query: 247 ----------------------ENVL-----------SVKEMFLKLDNKNLVSWNVMIAV 273
                                  N L             + +F +++ ++LVSWN +IA 
Sbjct: 238 VINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAA 297

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK-LQP 332
           Y  N+ P+ A+  +  M++ GI P+ ++V S+      LS   + R I  +V R++ L  
Sbjct: 298 YEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDK 357

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           ++ + NALV+MYAK G +  A TVFDQ+  +D +SW ++++ Y  +G   +A+  ++ M 
Sbjct: 358 DVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMM- 416

Query: 393 MSGLCPDSI----AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLL 446
               C D+I     +VS++ A SH G L++G    KI  +  K    ++ F   CL+DL 
Sbjct: 417 --EECRDTIPNQGTWVSIIPAYSHVGALQQG---MKIHAKLIKNSLYLDVFVATCLIDLY 471

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVA----------ACCLYSNMDIGILAADHI 494
           G+ G++E+A  L  ++P + +   W +++A          A  L+ +M    + ADHI
Sbjct: 472 GKCGRLEDAMSLFYEIPRDTSVP-WNAIIASLGIHGRGEEALQLFKDMLAERVKADHI 528


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 182/542 (33%), Positives = 302/542 (55%), Gaps = 35/542 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+ +  +LH  + +   L    ++   L+  Y  C  + +   +F  +   ++V +N +I
Sbjct: 263 DLLSGVQLHT-LAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMI 321

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
              V N L  DAL ++ +M   G  PD  T   +L A +  N    G +IH  +V+    
Sbjct: 322 SGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAH 381

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++F  + LV +Y KC  ++ A+ V +   S DVV  ++M++GY  N   + A+ + R +
Sbjct: 382 VDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYL 441

Query: 223 ESLRIKPDADTMASLLPS----------------VTNTSPENVLSVKE------------ 254
            +L IKP+A  +AS LP+                V   + E    V+             
Sbjct: 442 LALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRL 501

Query: 255 -----MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                MF K+  K+ V+WN MI+ +A N  P EA+DL+ QM + G++ N ++++S+L AC
Sbjct: 502 DLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSAC 561

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L A+  G++IH  + +  ++ +L  E+AL+DMY KCG+L  A  VF+ M  ++ VSW 
Sbjct: 562 AGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWN 621

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           S+ISAYG  G   ++V L   M   G   D + F++++SAC+HAG ++EG   F+ MTE+
Sbjct: 622 SIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEE 681

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y + P++EH +C+VDL  RAGK+++A   I  MP +P+  IWG+L+ AC ++ N+++  +
Sbjct: 682 YHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHRNVELAEI 741

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           A+  +F L P+  GYYVL+SNI A AGRW  V ++R+ M  K ++K+PG S V++N+   
Sbjct: 742 ASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRRLMKDKKVQKIPGYSWVDVNNTSH 801

Query: 549 II 550
           + 
Sbjct: 802 LF 803



 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 153/482 (31%), Positives = 250/482 (51%), Gaps = 57/482 (11%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L++ Y   G +   R VFD +  ++ V +NV++  YV       A+ +++ M   G
Sbjct: 184 VGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASG 243

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            DP+  T  C L  C+    LL G+Q+H   VK GL+  +   N LV+MY KC CL+EA 
Sbjct: 244 CDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAW 303

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           R+   MP  D+VTWN M++G  QNG  D+AL +  +M+   ++PD+ T+ASLLP++T  +
Sbjct: 304 RLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELN 363

Query: 246 P---------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIA 272
                                              +V   + +F    + ++V  + MI+
Sbjct: 364 GFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMIS 423

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y  N M   AV ++  +   GI+PNA+ VAS LPAC  ++A+ +G+++H YV +   + 
Sbjct: 424 GYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEG 483

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
              +E+AL+DMY+KCG L  +  +F +M  +D V+W SMIS++  +G+  +A+ LF +M+
Sbjct: 484 RCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMI 543

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA--CLVDLLGRAG 450
           M G+  +++   S+LSAC+    +  G+    I+    K   R + FA   L+D+ G+ G
Sbjct: 544 MEGVKYNNVTISSILSACAGLPAIYYGKEIHGIII---KGPIRADLFAESALIDMYGKCG 600

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAA--------------CCLYSNMDIGILAADHIFH 496
            +E A  + + MP E NE  W S+++A              CC+          ADH+  
Sbjct: 601 NLELALRVFEHMP-EKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEG----FKADHVTF 655

Query: 497 LA 498
           LA
Sbjct: 656 LA 657



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 214/450 (47%), Gaps = 70/450 (15%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDP--DCYTYPCVLKACSGSNSLLVGLQIHCS 155
           +N LIR +     +  A+  Y  M  H   P  D +T P V+K+C+   +L +G  +H +
Sbjct: 113 WNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVHRT 172

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
              +GLD +++ G+ L+ MY   G L  AR V + M  +D V WN M+ GY + G    A
Sbjct: 173 TRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASA 232

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPE-------NVLSVK--------------- 253
           + + R M +    P+  T+A  L SV     +       + L+VK               
Sbjct: 233 VGLFRVMRASGCDPNFATLACFL-SVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVS 291

Query: 254 ------------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAIS 301
                        +F  +   +LV+WN MI+    N +  +A+ L+  M+  G++P++++
Sbjct: 292 MYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVT 351

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           +AS+LPA  +L+    G++IH Y+ R     ++ L +ALVD+Y KC  +  A+ VFD  +
Sbjct: 352 LASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATK 411

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS---------- 411
             DVV  ++MIS Y ++     AV +F  +L  G+ P+++   S L AC+          
Sbjct: 412 SIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQE 471

Query: 412 -HAGLLE---EGRYYFK-IMTEQYKLVPRIE--HFA-------------CLVDLLGRAGK 451
            H  +L+   EGR Y +  + + Y    R++  H+               ++    + G+
Sbjct: 472 LHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGE 531

Query: 452 VEEAYDLIKQMPMEP---NERIWGSLVAAC 478
            EEA DL +QM ME    N     S+++AC
Sbjct: 532 PEEALDLFRQMIMEGVKYNNVTISSILSAC 561


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 181/522 (34%), Positives = 290/522 (55%), Gaps = 42/522 (8%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV-H 124
           +G  L+  Y  CGQM D   VF E    +VV +  +I  Y  +     AL  +  M V  
Sbjct: 279 VGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSE 338

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
              PD  T   V  AC+  ++  +G  +H  V + GLD  L   N L+ +YGK G +K A
Sbjct: 339 KVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNA 398

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS---V 241
             +  +M  KD+++W++MVA YA NG   + LD+  EM   RIKP+  T+ S+L +   +
Sbjct: 399 SNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACI 458

Query: 242 TNT---------------------------------SPENVLSVKEMFLKLDNKNLVSWN 268
           +N                                  SPE  +   ++F ++  K++++W 
Sbjct: 459 SNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAV---DLFNRMPKKDVIAWA 515

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
           V+ + YA+N M  E++ ++  M   G  P+AI++  +L    +L  L     +H +V + 
Sbjct: 516 VLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKN 575

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
             + N  +  +L+++YAKC S+ +A  VF  M  +DVV+W+S+I+AYG  GQG +A+ LF
Sbjct: 576 GFENNQFIGASLIEVYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLF 635

Query: 389 SKML-MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
            +M   S   P+++ F+S+LSACSH+GL++EG   F IM  +YKL P  EH+A +VDLLG
Sbjct: 636 YQMANHSDTKPNNVTFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLG 695

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507
           R G+++ A D+I  MPM+    IWG+L+ AC ++ N+ +G +AA ++F L PN +GYY+L
Sbjct: 696 RMGELDMALDVINNMPMQAGPDIWGALLGACRIHQNIKMGEVAAKNLFSLDPNHAGYYIL 755

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           LSNIY+    W    ++R+ +  K + K+ G S VE+ ++V+
Sbjct: 756 LSNIYSVDENWHSATKLRRLVKEKRLNKIVGQSVVELKNEVR 797



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 151/568 (26%), Positives = 264/568 (46%), Gaps = 81/568 (14%)

Query: 46  TLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           ++ +LH+Q +    +H +  I  KL   Y     +     +F E  ++ V  +N L+RSY
Sbjct: 154 SISQLHSQCLKAGLVH-DSFIVTKLNVLYARYASIHHAHKLFQETPHRTVYLWNALLRSY 212

Query: 106 VNNYLYYDALHVYKNM----SVHGFD-PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
                + + L +++ M    SV   + PD Y+    LK+C+G   LL+G  IH  + KV 
Sbjct: 213 CFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVR 272

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV-C 219
           +D ++F G+ L+ +Y KCG + +A +V  + P  DVV W S+++GY Q+G  + AL    
Sbjct: 273 IDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFS 332

Query: 220 REMESLRIKPDADTMASLLPSVTNTS---------------------------------P 246
           R + S ++ PD  T+ S+  +    S                                  
Sbjct: 333 RMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKT 392

Query: 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
            ++ +   +F ++ +K+++SW+ M+A YA+N    + +DL+ +M    I+PN ++V SVL
Sbjct: 393 GSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVL 452

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
            AC  +S L  G KIH        +    +  AL+DMY KC S  +A  +F++M  +DV+
Sbjct: 453 RACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVI 512

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL---------- 416
           +W  + S Y  +G  ++++ +F  ML SG  PD+IA V +L+  S  G+L          
Sbjct: 513 AWAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFV 572

Query: 417 -----EEGRYYFKIMTEQYKLVPRIEH---------------FACLVDLLGRAGKVEEAY 456
                E  ++    + E Y     IE                ++ ++   G  G+ EEA 
Sbjct: 573 IKNGFENNQFIGASLIEVYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEAL 632

Query: 457 DLIKQMP----MEPNERIWGSLVAACCLYSNMDIGILAAD---HIFHLAPNQSGYYVLLS 509
            L  QM      +PN   + S+++AC     +  GI   D   + + L PN   Y +++ 
Sbjct: 633 KLFYQMANHSDTKPNNVTFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVD 692

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
            +    GR G++      +N+  ++  P
Sbjct: 693 LL----GRMGELDMALDVINNMPMQAGP 716


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 167/471 (35%), Positives = 251/471 (53%), Gaps = 37/471 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  + + G + D+R  F E+ ++NVV +N +I  Y       +A  ++  M   G   D
Sbjct: 155 LLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLAD 214

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +T   +L ACS   +L VG  +HC ++  G   +   GN L+ MYGKCG L  A R  +
Sbjct: 215 VFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFD 274

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            MP K+VVTW SM+   A++G  D                                    
Sbjct: 275 MMPIKNVVTWTSMLCAQAKHGSVD------------------------------------ 298

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            +V++ F ++  +N+VSWN MI+ Y       E +DLY +M   GI P+  ++A VL AC
Sbjct: 299 -AVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSAC 357

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
           G    L  G+ IH YV      P + L N+L+DMYA+CG +  A  +F +M  ++V+SW 
Sbjct: 358 GQNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWN 417

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
            +I A  M G+  + V  F  M+     PD I FV +LSACSH GLLE G YYF+ M   
Sbjct: 418 VIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARV 477

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y + P +EH+ C+VDLLGR G + +A +LIK M ++P+  +WG+L+ AC ++ N++IG L
Sbjct: 478 YNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNVEIGKL 537

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
               +  L     G +VL+ N++ +  +W D+K++RK M  +G KK  G S
Sbjct: 538 VIKQLLELEGITGGLFVLICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVS 588


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 175/519 (33%), Positives = 294/519 (56%), Gaps = 43/519 (8%)

Query: 68  LKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD 127
           + L   Y A G   + R +FDE+  +++  +N +I  Y  +    +AL +   +      
Sbjct: 192 IHLYSRYKAVG---NARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRA---- 244

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
            D  T   +L AC+ +     G+ IH   +K GL+  LF  N L+ +Y + G L++ ++V
Sbjct: 245 MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKV 304

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASL---------- 237
            + M  +D+++WNS++  Y  N +   A+ + +EM   RI+PD  T+ SL          
Sbjct: 305 FDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDI 364

Query: 238 ----------------LPSVTNTSPENVL--------SVKEMFLKLDNKNLVSWNVMIAV 273
                           L  +T  +   V+        S + +F  L N +++SWN +I+ 
Sbjct: 365 RACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISG 424

Query: 274 YANNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
           YA N   +EA+++Y  ME  G I  N  +  SVLPAC    AL  G K+H  + +  L  
Sbjct: 425 YAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYL 484

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           ++ +  +L DMY KCG L +A ++F Q+   + V W ++I+ +G  G G  AV LF +ML
Sbjct: 485 DVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEML 544

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
             G+ PD I FV++LSACSH+GL++EG++ F++M   Y + P ++H+ C+VD+ GRAG++
Sbjct: 545 DEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQL 604

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
           E A   IK M ++P+  IWG+L++AC ++ N+D+G +A++H+F + P   GY+VLLSN+Y
Sbjct: 605 ETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMY 664

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQII 550
           A AG+W  V  +R   + KG++K PG +S+E++++V++ 
Sbjct: 665 ASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVF 703



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 140/510 (27%), Positives = 253/510 (49%), Gaps = 58/510 (11%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++++ K LHA++++++ +  N  I  KL+  Y   G +   RH FD I N++V  +N++I
Sbjct: 66  NLQSAKCLHARLVVSKQIQ-NVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMI 124

Query: 103 RSYVNNYLYYDALHVYK-NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
             Y       + +  +   M   G  PD  T+P VLKAC    +++ G +IHC  +K G 
Sbjct: 125 SGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC---RTVIDGNKIHCLALKFGF 181

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
            ++++    L+ +Y +   +  AR + ++MP +D+ +WN+M++GY Q+G   EAL +   
Sbjct: 182 MWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNG 241

Query: 222 MESLRIKPDADTMASLLPSVTNTSPEN--------------------------------- 248
           + ++    D+ T+ SLL + T     N                                 
Sbjct: 242 LRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGR 297

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA---ISVASV 305
           +   +++F ++  ++L+SWN +I  Y  N  P  A+ L+ +M +  I+P+    IS+AS+
Sbjct: 298 LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASI 357

Query: 306 LPACGDLSALLLGRKIHRYVERKK-LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           L   GD+ A    R +  +  RK     ++ + NA+V MYAK G +  AR VF+ +   D
Sbjct: 358 LSQLGDIRAC---RSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTD 414

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSG-LCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           V+SW ++IS Y  +G   +A+ +++ M   G +  +   +VSVL ACS AG L +G    
Sbjct: 415 VISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQG---M 471

Query: 424 KIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
           K+     K    ++ F    L D+ G+ G++E+A  L  Q+P   N   W +L+A    +
Sbjct: 472 KLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFH 530

Query: 482 SNMDIGILAADHIFH--LAPNQSGYYVLLS 509
            + +  ++    +    + P+   +  LLS
Sbjct: 531 GHGEKAVMLFKEMLDEGVKPDHITFVTLLS 560



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 174/386 (45%), Gaps = 30/386 (7%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           IL +  DI+  + +    +       + +IG  ++  Y   G +   R VF+ + N +V+
Sbjct: 357 ILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVI 416

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
            +N +I  Y  N    +A+ +Y  M   G    +  T+  VL ACS + +L  G+++H  
Sbjct: 417 SWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGR 476

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           ++K GL  ++F    L  MYGKCG L++A  +   +P  + V WN+++A +  +G  ++A
Sbjct: 477 LLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKA 536

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD---NKNLVSWNVMIA 272
           + + +EM    +KPD  T  +LL + +++   +        ++ D     +L  +  M+ 
Sbjct: 537 VMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVD 596

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY---VERKK 329
           +Y        A+     M    ++P+A    ++L AC     + LG+    +   VE + 
Sbjct: 597 MYGRAGQLETALKFIKSMS---LQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEH 653

Query: 330 LQPNLRLENALVDMYAKCG---SLTEARTVFDQMRCQDVVSWTSM-----ISAYGMSGQG 381
           +  ++ L N    MYA  G    + E R++      +    W+SM     +  +    Q 
Sbjct: 654 VGYHVLLSN----MYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQT 709

Query: 382 Y--------DAVALFSKMLMSGLCPD 399
           +        +  AL +K+ M G  PD
Sbjct: 710 HPMYEEMYRELTALQAKLKMIGYVPD 735


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 193/601 (32%), Positives = 305/601 (50%), Gaps = 98/601 (16%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC ++    P  +     H  I  N    SN  I   L+  Y  CG + +   +FDEIT 
Sbjct: 164 ACGEL----PSYRCGSAFHGLICCNG-FESNVFICNALVAMYSRCGSLEEASMIFDEITQ 218

Query: 93  K---NVVFFNVLIRSYVNNYLYYDALHVYKNMS--VH----GFDPDCYTYPCVLKACSGS 143
           +   +V+ +N ++ ++V +   + AL ++  M+  VH        D  +   +L AC   
Sbjct: 219 RGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSL 278

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
            ++    ++H + ++ G   ++F GN L+  Y KCG ++ A +V N M  KDVV+WN+MV
Sbjct: 279 KAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMV 338

Query: 204 AGYA-----------------------------------QNGRFDEALDVCREMESLRIK 228
           AGY+                                   Q G   EAL++ R+M      
Sbjct: 339 AGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSL 398

Query: 229 PDADTMASLLPS------VTNTSPENVLSVKEMFLKLDN--------------------- 261
           P+  T+ S+L +       +  +  +  S+K   L LDN                     
Sbjct: 399 PNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSK 458

Query: 262 ------------------KNLVSWNVMIAVYANNSMPAEAVDLYLQM--EVHGIEPNAIS 301
                             +N+V+W VMI  +A      +A+ L+++M  E +G+ PNA +
Sbjct: 459 CRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYT 518

Query: 302 VASVLPACGDLSALLLGRKIHRYVER--KKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           ++ +L AC  L+A+ +G++IH YV R  +       + N L+DMY+KCG +  AR VFD 
Sbjct: 519 ISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDS 578

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
           M  +  +SWTSM++ YGM G+G +A+ +F KM  +G  PD I F+ VL ACSH G++++G
Sbjct: 579 MSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQG 638

Query: 420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
             YF  M+  Y L PR EH+AC +DLL R+G++++A+  +K MPMEP   +W +L++AC 
Sbjct: 639 LSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACR 698

Query: 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA 539
           ++SN+++   A + +  +     G Y L+SNIYA AGRW DV R+R  M   GIKK PG 
Sbjct: 699 VHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGC 758

Query: 540 S 540
           S
Sbjct: 759 S 759



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 131/490 (26%), Positives = 221/490 (45%), Gaps = 92/490 (18%)

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
           S+G  ++ +Y ACG       V + +T    V++N+LIR ++       A++V   M   
Sbjct: 90  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRA 149

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G  PD +T P VLKAC    S   G   H  +   G + N+F  N LVAMY +CG L+EA
Sbjct: 150 GTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 209

Query: 185 RRVLNDMPSK---DVVTWNSMVAGYAQNGRFDEALDVCREM------ESLRIKPDADTMA 235
             + +++  +   DV++WNS+V+ + ++     ALD+  +M      +    + D  ++ 
Sbjct: 210 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 269

Query: 236 SLLPSV------------------TNTSPE----NVL-----------SVKEMFLKLDNK 262
           ++LP+                     T P+    N L           +  ++F  ++ K
Sbjct: 270 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 329

Query: 263 NLVSWNVMIAVYANN----------------SMP-------------------AEAVDLY 287
           ++VSWN M+A Y+ +                ++P                    EA++L+
Sbjct: 330 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 389

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL----------QPNLRLE 337
            QM   G  PN +++ SVL AC  L A   G +IH Y  +  L            +L + 
Sbjct: 390 RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVY 449

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQD--VVSWTSMISAYGMSGQGYDAVALFSKMLMS- 394
           NAL+DMY+KC S   AR++FD +  ++  VV+WT MI  +   G   DA+ LF +M+   
Sbjct: 450 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 509

Query: 395 -GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA-CLVDLLGRAGKV 452
            G+ P++     +L AC+H   +  G+     +   ++        A CL+D+  + G V
Sbjct: 510 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDV 569

Query: 453 EEAYDLIKQM 462
           + A  +   M
Sbjct: 570 DTARHVFDSM 579


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 193/601 (32%), Positives = 305/601 (50%), Gaps = 98/601 (16%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC ++    P  +     H  I  N    SN  I   L+  Y  CG + +   +FDEIT 
Sbjct: 171 ACGEL----PSYRCGSAFHGLICCNG-FESNVFICNALVAMYSRCGSLEEASMIFDEITQ 225

Query: 93  K---NVVFFNVLIRSYVNNYLYYDALHVYKNMS--VH----GFDPDCYTYPCVLKACSGS 143
           +   +V+ +N ++ ++V +   + AL ++  M+  VH        D  +   +L AC   
Sbjct: 226 RGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSL 285

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
            ++    ++H + ++ G   ++F GN L+  Y KCG ++ A +V N M  KDVV+WN+MV
Sbjct: 286 KAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMV 345

Query: 204 AGYA-----------------------------------QNGRFDEALDVCREMESLRIK 228
           AGY+                                   Q G   EAL++ R+M      
Sbjct: 346 AGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSL 405

Query: 229 PDADTMASLLPS------VTNTSPENVLSVKEMFLKLDN--------------------- 261
           P+  T+ S+L +       +  +  +  S+K   L LDN                     
Sbjct: 406 PNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSK 465

Query: 262 ------------------KNLVSWNVMIAVYANNSMPAEAVDLYLQM--EVHGIEPNAIS 301
                             +N+V+W VMI  +A      +A+ L+++M  E +G+ PNA +
Sbjct: 466 CRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYT 525

Query: 302 VASVLPACGDLSALLLGRKIHRYVER--KKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           ++ +L AC  L+A+ +G++IH YV R  +       + N L+DMY+KCG +  AR VFD 
Sbjct: 526 ISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDS 585

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
           M  +  +SWTSM++ YGM G+G +A+ +F KM  +G  PD I F+ VL ACSH G++++G
Sbjct: 586 MSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQG 645

Query: 420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
             YF  M+  Y L PR EH+AC +DLL R+G++++A+  +K MPMEP   +W +L++AC 
Sbjct: 646 LSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACR 705

Query: 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA 539
           ++SN+++   A + +  +     G Y L+SNIYA AGRW DV R+R  M   GIKK PG 
Sbjct: 706 VHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGC 765

Query: 540 S 540
           S
Sbjct: 766 S 766



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 131/490 (26%), Positives = 221/490 (45%), Gaps = 92/490 (18%)

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
           S+G  ++ +Y ACG       V + +T    V++N+LIR ++       A++V   M   
Sbjct: 97  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRA 156

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G  PD +T P VLKAC    S   G   H  +   G + N+F  N LVAMY +CG L+EA
Sbjct: 157 GTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 216

Query: 185 RRVLNDMPSK---DVVTWNSMVAGYAQNGRFDEALDVCREM------ESLRIKPDADTMA 235
             + +++  +   DV++WNS+V+ + ++     ALD+  +M      +    + D  ++ 
Sbjct: 217 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 276

Query: 236 SLLPSV------------------TNTSPE----NVL-----------SVKEMFLKLDNK 262
           ++LP+                     T P+    N L           +  ++F  ++ K
Sbjct: 277 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 336

Query: 263 NLVSWNVMIAVYANN----------------SMP-------------------AEAVDLY 287
           ++VSWN M+A Y+ +                ++P                    EA++L+
Sbjct: 337 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 396

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL----------QPNLRLE 337
            QM   G  PN +++ SVL AC  L A   G +IH Y  +  L            +L + 
Sbjct: 397 RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVY 456

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQD--VVSWTSMISAYGMSGQGYDAVALFSKMLMS- 394
           NAL+DMY+KC S   AR++FD +  ++  VV+WT MI  +   G   DA+ LF +M+   
Sbjct: 457 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 516

Query: 395 -GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA-CLVDLLGRAGKV 452
            G+ P++     +L AC+H   +  G+     +   ++        A CL+D+  + G V
Sbjct: 517 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDV 576

Query: 453 EEAYDLIKQM 462
           + A  +   M
Sbjct: 577 DTARHVFDSM 586


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 192/559 (34%), Positives = 298/559 (53%), Gaps = 69/559 (12%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGA---CGQMVDTRHVFDEITNKNVVFFNV 100
           ++ LK LHAQII+  H  +N ++ L  + ++ A    G +   + +FD+I   N   +N 
Sbjct: 1   MRGLKLLHAQIIL--HGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNS 58

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           LIR Y N+    DA+ +++ M   G  P+ +T P VLKAC   ++    + +H   +K+G
Sbjct: 59  LIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLG 118

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA----- 215
           +   +F  N L+A+Y  CG +  AR++ +D+  K +V+WNSM+ GYA  G + EA     
Sbjct: 119 IGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFR 178

Query: 216 -----------------LDVCRE-------------MESLRIKPD-------------AD 232
                            L VC +             +E   +K D               
Sbjct: 179 KMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCG 238

Query: 233 TMASLLPSVTNTSPENVLS----------------VKEMFLKLDNKNLVSWNVMIAVYAN 276
            + S       T  +NV+S                 +++F ++  KN+VSWN MI+ Y  
Sbjct: 239 NLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLR 298

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
                EA+DL+ +M    + P+  ++ S+L AC  L  L++G+KIH Y+   K    + L
Sbjct: 299 EGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTL 358

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            N+L+DMYAKCG +  A  +F +M  +++VSW  +I A  + G G +A+ LF +M   G 
Sbjct: 359 YNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGT 418

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PD I    +LSACSH+GL++ G YYF  M   Y++   IEH+AC+VDLLGR G + EA 
Sbjct: 419 LPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAI 478

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           +LI +MPM+P+  +WG+L+ AC ++ N++IG      +  L P+  G YVL+SNIY +A 
Sbjct: 479 ELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQ 538

Query: 517 RWGDVKRVRKFMNSKGIKK 535
           RW DVK++RK M  +GIKK
Sbjct: 539 RWEDVKKIRKLMIDRGIKK 557


>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
 gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 530

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 290/512 (56%), Gaps = 46/512 (8%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK---NVVFFN 99
           ++KTLK+ H  +II      N    L + +   AC      R+ +   T++   N    N
Sbjct: 27  NLKTLKQSHCYMIITGLNRDN----LNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHN 82

Query: 100 VLIRSYV---NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +IR+         +  A+ VY+ +      PD +T+P VLK     + +  G QIH  V
Sbjct: 83  TMIRALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQV 142

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           V  G D ++    GL+ MY  CG L +AR++ ++M  KDV  WN+++AGY + G  DEA 
Sbjct: 143 VVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEA- 201

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                           ++  ++P                      +N VSW  +I+ YA 
Sbjct: 202 ---------------RSLLEMMPCWV-------------------RNEVSWTCVISGYAK 227

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           +   +EA++++ +M +  +EP+ +++ +VL AC DL +L LG +I  YV+ + +   + L
Sbjct: 228 SGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSL 287

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            NA++DMYAK G++T+A  VF+ +  ++VV+WT++I+     G G +A+A+F++M+ +G+
Sbjct: 288 NNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGV 347

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P+ + F+++LSACSH G ++ G+  F  M  +Y + P IEH+ C++DLLGRAGK+ EA 
Sbjct: 348 RPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREAD 407

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           ++IK MP + N  IWGSL+AA  ++ ++++G  A   +  L PN SG Y+LL+N+Y+  G
Sbjct: 408 EVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLG 467

Query: 517 RWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
           RW + + +R  M   G+KKM G +S+E+ ++V
Sbjct: 468 RWDESRMMRNMMKGIGVKKMAGESSIEVENRV 499


>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
 gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
          Length = 506

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 155/404 (38%), Positives = 244/404 (60%), Gaps = 39/404 (9%)

Query: 147 LVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           L+G Q+H  +++ G +  +      LV +Y  C  + +AR V ++M  +DVV WN M+AG
Sbjct: 95  LLGPQLHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAG 154

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           Y + G    A                                     +E+F  +  +N+V
Sbjct: 155 YVKAGDLAHA-------------------------------------RELFDAMPERNVV 177

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           SW  +I  YA    P EAV+++ +M+V GIEP+ +++ SVL ACGDL A+ LG  +HR+V
Sbjct: 178 SWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFV 237

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
            R+ L+  + L N+++DMY KCG + +A  VF+ M  + VV+WT++I+ + + G G  AV
Sbjct: 238 VRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAV 297

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
            +F +M    + P+ + F+++LSACSH GL + GR+YF IM  QY++ P++EH+ C+VDL
Sbjct: 298 EMFRRMERENMAPNDVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGCMVDL 357

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           LGRAG ++EA DL+K MP++ N  IWG+L+AA   + + D+G  A  H+  L P+ SG Y
Sbjct: 358 LGRAGCLKEAQDLVKDMPLKANAAIWGALLAASRTHGDADLGEEALVHLIELEPSNSGNY 417

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA-SVEMNDQVQ 548
           +LLSNI+A+  RW DV ++RK M  +G++ +PGA S+E++  V 
Sbjct: 418 ILLSNIFAEQERWDDVSKLRKAMKERGLRNVPGASSIEVDGMVH 461



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 31/227 (13%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV-- 106
           +LH+ ++   H+ S+  +   L++ Y  C  + D R VF E+  ++VV +NV+I  YV  
Sbjct: 99  QLHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAGYVKA 158

Query: 107 ---------------NNYLYY--------------DALHVYKNMSVHGFDPDCYTYPCVL 137
                           N + +              +A+ V++ M V G +PD      VL
Sbjct: 159 GDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLSVL 218

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
            AC    ++ +G  +H  VV+ GL   +   N ++ MY KCGC+++A  V   M  K VV
Sbjct: 219 SACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVV 278

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           TW +++AG+A +G   +A+++ R ME   + P+  T  ++L + ++ 
Sbjct: 279 TWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHV 325



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 152/341 (44%), Gaps = 57/341 (16%)

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD---NKNLVSWNVMIAVYANNSMP 280
           SL + P    + S LP +T  SP ++L      L      +  LVS  +++A       P
Sbjct: 4   SLPLSPVLHRLLSFLPRLT--SPRHLLQAHAFLLPRGGHRHPRLVS-ALILASLRLVPHP 60

Query: 281 AEAVDLYLQMEVHGIEPNA-ISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLEN 338
            +  D +    +  + P+  +  A+ LP+   L   LLG ++H  + R   +  +  +  
Sbjct: 61  QQTSD-HAAALLRRVHPSVYLRAAARLPS-HLLRRSLLGPQLHSLLLRTGHVASDTHVSA 118

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ------------------ 380
           +LV +Y  C  + +AR+VF +M  +DVV+W  MI+ Y  +G                   
Sbjct: 119 SLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAGYVKAGDLAHARELFDAMPERNVVS 178

Query: 381 ------GY-------DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
                 GY       +AV +F +M + G+ PD +A +SVLSAC   G ++ G +  + + 
Sbjct: 179 WTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVV 238

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
            +  L   I     ++D+  + G +E+A ++ + M  E +   W +L+A   L+    +G
Sbjct: 239 RR-GLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGME-EKSVVTWTTLIAGFALHG---LG 293

Query: 488 ILAADHIF------HLAPNQSGYYVLLSNI----YAKAGRW 518
           + A + +F      ++APN   +  +LS          GRW
Sbjct: 294 LQAVE-MFRRMERENMAPNDVTFLAILSACSHVGLTDLGRW 333



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 5/155 (3%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y  CG +     VF+ +  K+VV +  LI  +  + L   A+ +++ M      P+  T+
Sbjct: 256 YMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTF 315

Query: 134 PCVLKACSGSNSLLVG-LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
             +L ACS      +G    +  V +  +   + +   +V + G+ GCLKEA+ ++ DMP
Sbjct: 316 LAILSACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMP 375

Query: 193 SK-DVVTWNSMVAGYAQNGRFD---EALDVCREME 223
            K +   W +++A    +G  D   EAL    E+E
Sbjct: 376 LKANAAIWGALLAASRTHGDADLGEEALVHLIELE 410


>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1347

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 180/538 (33%), Positives = 301/538 (55%), Gaps = 37/538 (6%)

Query: 44   IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
            ++  + +H QI   +    + ++   L+  Y  CG ++ +  +F++I  KN V +  +I 
Sbjct: 776  LRIARSVHGQIT-RKMFDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMIS 834

Query: 104  SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            SY        AL  +  M   G +P+  T   +L +C  +  +  G  +H   ++  LD 
Sbjct: 835  SYNRGEFSEKALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDP 894

Query: 164  NLFN-GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            N  +    LV +Y +CG L +   +L+ +  +++V WNS ++ YA  G   EAL + R+M
Sbjct: 895  NYESLSPALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQM 954

Query: 223  ESLRIKPDADTMASLLPSVTNT------------------SPENVL-SVKEMFLK----- 258
             + RIKPD+ T+AS++ +  NT                  S E V  SV +M+ K     
Sbjct: 955  VTWRIKPDSFTLASIISACENTGLVRLGKQIHGHVIRTDVSDEFVQNSVIDMYSKSGFVN 1014

Query: 259  --------LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
                    + ++++V+WN M+  ++ N    EA++L+  M    +E N ++  +V+ AC 
Sbjct: 1015 LACTVFDQIKHRSIVTWNSMLCGFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACS 1074

Query: 311  DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
             + +L  GR +H  +    ++ +L  + AL+DMYAKCG L  A TVF  M  + +VSW+S
Sbjct: 1075 SIGSLEKGRWVHHKLIVCGIK-DLFTDTALIDMYAKCGDLNTAETVFRAMSNRSIVSWSS 1133

Query: 371  MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
            MI+AYGM G+   A++ F++M+ SG  P+ + F++VLSAC H+G +EEG+YYF +M + +
Sbjct: 1134 MINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLM-KLF 1192

Query: 431  KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
             + P  EHFAC +DLL R+G ++EAY  IK+MP   +  +WGSLV  C ++  MDI    
Sbjct: 1193 GVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAI 1252

Query: 491  ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
             + I  +  + +GYY LLSNIYA+ G W + +R+R  M S  +KK+PG +++E++ +V
Sbjct: 1253 KNDISDIVTDDTGYYTLLSNIYAEEGEWEEFRRMRSAMKSLNLKKVPGYSAIEIDKKV 1310



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 112/455 (24%), Positives = 203/455 (44%), Gaps = 86/455 (18%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++ + +LHA +++   L  +P    KL+ +Y   G    +R VF+     +   + VLI+
Sbjct: 572 LRLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIK 631

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS-LLVGLQIHCSVVKVGLD 162
             V  +L   A+ +Y  +         + +P VL+AC+GS   L VG ++H  ++K G+D
Sbjct: 632 CNVWCHLLDAAIDLYHRLVSEKTQISKFVFPSVLRACAGSREHLSVGRKVHGRIIKSGVD 691

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
                                           D V   S++  Y Q G   +A       
Sbjct: 692 -------------------------------DDAVIETSLLCMYGQTGNLSDA------- 713

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                                         +++F  +  ++LV+W+ +++    N    +
Sbjct: 714 ------------------------------EKVFDGMPVRDLVAWSTLVSSCLENCEVLK 743

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A+ ++  M   G+EP+A+++ SV+  C +L  L + R +H  + RK    +  L N+L+ 
Sbjct: 744 ALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDFDETLCNSLLT 803

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MY+KCG L  +  +F+++  ++ VSWT+MIS+Y        A+  FS+ML SG+ P+ + 
Sbjct: 804 MYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMLKSGIEPNLVT 863

Query: 403 FVSVLSACSHAGLLEEGR--YYFKIMTEQYKLVPRIEHFA-CLVDLLGRAGKVEEAYDLI 459
             S+LS+C   GL+ EG+  + F I  E   L P  E  +  LV+L    G++ +  + I
Sbjct: 864 LYSILSSCGLNGLIREGKSVHGFAIRRE---LDPNYESLSPALVELYAECGRLGDC-ETI 919

Query: 460 KQMPMEPNERIW----------GSLVAACCLYSNM 484
             +  + N  +W          G ++ A CL+  M
Sbjct: 920 LHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQM 954


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 182/511 (35%), Positives = 283/511 (55%), Gaps = 64/511 (12%)

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG- 160
           +RS   +  + +A+  Y  M+V G  PD + +P VLKA SG   L  G QIH + VK G 
Sbjct: 64  LRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGY 123

Query: 161 --------------------LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWN 200
                               +    F  N L+AMY K G + +++ +      +D+V+WN
Sbjct: 124 GSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWN 183

Query: 201 SMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT------------------ 242
           +M++ ++Q+ RF EAL   R M    ++ D  T+AS+LP+ +                  
Sbjct: 184 TMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRN 243

Query: 243 NTSPEN----------------VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
           N   EN                V S + +F  +  + +  WN MI+ YA N +  +A+ L
Sbjct: 244 NDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALIL 303

Query: 287 YLQM-EVHGIEPNAISVASVLPAC-GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMY 344
           +++M +V G+ PN  ++ASV+PAC   L+A+  G++IH Y  R  L  ++ + +ALVDMY
Sbjct: 304 FIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMY 363

Query: 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG-----LCPD 399
           AKCG L  +R VF++M  ++V++W  +I A GM G+G +A+ LF  M+          P+
Sbjct: 364 AKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPN 423

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
            + F++V +ACSH+GL+ EG   F  M   + + P  +H+AC+VDLLGRAG++EEAY+L+
Sbjct: 424 EVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELV 483

Query: 460 KQMPMEPNE-RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
             MP E ++   W SL+ AC ++ N+++G +AA ++ HL PN + +YVLLSNIY+ AG W
Sbjct: 484 NTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLW 543

Query: 519 GDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
                VRK M   G+KK PG S +E  D+V 
Sbjct: 544 NKAMEVRKNMRQMGVKKEPGCSWIEFRDEVH 574



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 186/396 (46%), Gaps = 64/396 (16%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACG--------------------QMVD 82
           D+KT +++HA  +   +  S+ ++   L+  YG CG                    ++ D
Sbjct: 107 DLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDD 166

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
           ++ +F+   ++++V +N +I S+  +  + +AL  ++ M + G + D  T   VL ACS 
Sbjct: 167 SKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSH 226

Query: 143 SNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNS 201
              L VG +IH  V++   L  N F G+ LV MY  C  ++  RRV + +  + +  WN+
Sbjct: 227 LERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNA 286

Query: 202 MVAGYAQNGRFDEALDVCREMESLR-IKPDADTMASLLPSVTNT-------------SPE 247
           M++GYA+NG  ++AL +  EM  +  + P+  TMAS++P+  ++             +  
Sbjct: 287 MISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIR 346

Query: 248 NVLS---------------------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
           N+L+                      + +F ++ NKN+++WNV+I     +    EA++L
Sbjct: 347 NMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALEL 406

Query: 287 YLQMEVHG-----IEPNAISVASVLPACGDLSALLLGRKI-HRYVERKKLQPNLRLENAL 340
           +  M          +PN ++  +V  AC     +  G  + +R      ++P       +
Sbjct: 407 FKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACV 466

Query: 341 VDMYAKCGSLTEARTVFDQMRCQ--DVVSWTSMISA 374
           VD+  + G L EA  + + M  +   V +W+S++ A
Sbjct: 467 VDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGA 502



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 161/349 (46%), Gaps = 63/349 (18%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++HA ++ N  L  N  +G  L+  Y  C Q+   R VFD I  + +  +N +I  Y  
Sbjct: 234 KEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYAR 293

Query: 108 NYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGS-NSLLVGLQIHCSVVKVGLDYNL 165
           N L   AL ++  M  V G  P+  T   V+ AC  S  ++  G +IH   ++  L  ++
Sbjct: 294 NGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDI 353

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
             G+ LV MY KCGCL  +RRV N+MP+K+V+TWN ++     +G+ +EAL++ + M + 
Sbjct: 354 TVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVA- 412

Query: 226 RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285
               +A       P                       N V++  + A  +++ + +E ++
Sbjct: 413 ----EAGRGGEAKP-----------------------NEVTFITVFAACSHSGLISEGLN 445

Query: 286 LYLQMEV-HGIEPN-------------------AISVASVLPA----CGDLSALLLGRKI 321
           L+ +M+  HG+EP                    A  + + +PA     G  S+LL   +I
Sbjct: 446 LFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRI 505

Query: 322 HRYVERKK--------LQPNLRLENALV-DMYAKCGSLTEARTVFDQMR 361
           H+ VE  +        L+PN+     L+ ++Y+  G   +A  V   MR
Sbjct: 506 HQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMR 554



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 121/278 (43%), Gaps = 36/278 (12%)

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
           SL+ +P           +T+ +P    S         +++  SW   +     ++   EA
Sbjct: 25  SLQTQPPPSIQKPTASPLTSKTPPKPTS--------PSRSTASWVDALRSRTRSNDFREA 76

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY-VERKKLQPNLRLENALVD 342
           +  Y++M V G  P+  +  +VL A   L  L  G +IH   V+      ++ + N LV+
Sbjct: 77  ISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVN 136

Query: 343 MYAKCGSL--------------------TEARTVFDQMRCQDVVSWTSMISAYGMSGQGY 382
           MY KCG +                     +++ +F+    +D+VSW +MIS++  S +  
Sbjct: 137 MYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFS 196

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL 442
           +A+A F  M++ G+  D +   SVL ACSH   L+ G+     +     L+      + L
Sbjct: 197 EALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSAL 256

Query: 443 VDLLGRAGKVEEA---YDLIKQMPMEPNERIWGSLVAA 477
           VD+     +VE     +D I    +E    +W ++++ 
Sbjct: 257 VDMYCNCRQVESGRRVFDHILGRRIE----LWNAMISG 290


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 183/569 (32%), Positives = 297/569 (52%), Gaps = 68/569 (11%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMR--TYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           LK++H+Q I    L SNP +  +++        G M   R VFD +   N   +N +I+ 
Sbjct: 35  LKQIHSQTICTG-LISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKG 93

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
           Y        A+ +Y  M   G  PD YTYP +LK  +   ++  G ++H  +VK+G   N
Sbjct: 94  YSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSN 153

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME- 223
           +F  N L+ +Y   G +  AR V +     DVVTWN M++GY ++ +FDE++ +  EME 
Sbjct: 154 VFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMER 213

Query: 224 ----------------------------------SLRIKP----------------DADT 233
                                              L+I+P                D DT
Sbjct: 214 MRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDT 273

Query: 234 MASLLPSVTN-------------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
              +  ++ +             T+   V   +  F K+  ++ VSW  MI  Y   +  
Sbjct: 274 ALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRF 333

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            E + L+ +M+   I+P+  ++ S+L AC  L AL LG  I  Y+++ +++ +  + NAL
Sbjct: 334 KEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNAL 393

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +DMY  CG++ +A  +F+ M  +D +SWT++I    ++G G +A+ +FS+ML + + PD 
Sbjct: 394 IDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDE 453

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           +  + VL AC+H+G++++G+ +F  MT Q+ + P + H+ C+VDLLGRAG ++EA+++IK
Sbjct: 454 VTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIK 513

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD 520
            MP++PN  +WGSL+ AC ++ + ++  +AA  I  L P     YVLL NIYA   RW  
Sbjct: 514 NMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEK 573

Query: 521 VKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           +  VRK M  +GIKK PG S +EMN  V 
Sbjct: 574 LHEVRKLMMDRGIKKTPGCSLIEMNGSVH 602


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 178/519 (34%), Positives = 284/519 (54%), Gaps = 34/519 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  YG CG +     VF+E   KN V +N +I         +DAL+ ++ M   G  P+
Sbjct: 153 LVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPN 212

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   +L           G +IH   +++G + ++F  N L+ MY K G   EA  + +
Sbjct: 213 SVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFH 272

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS---P 246
           ++  +++V+WN+M+A YA N    EA+    +M+     P+A T  ++LP+        P
Sbjct: 273 NLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGP 332

Query: 247 ENVL-----------------SVKEMFLK------------LDNKNLVSWNVMIAVYANN 277
              +                 S+ +M+ K               K+ VS+N++I  Y+  
Sbjct: 333 GKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSRKDEVSYNILIIGYSET 392

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
               ++++L+ +M + G +P+ +S   V+ AC +L+AL  G+++H    R  L  +L + 
Sbjct: 393 DDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVS 452

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
           N+L+D Y KCG +  A  +F+Q+  +DV SW +MI  YGM G+   A+++F  M    + 
Sbjct: 453 NSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQ 512

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
            D +++++VLSACSH GL+E G  YF  M  Q +L P   H+ C+VDLLGRAG VEEA  
Sbjct: 513 YDLVSYIAVLSACSHGGLVERGWQYFSEMLAQ-RLEPTEMHYTCMVDLLGRAGFVEEAAK 571

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
           LI+Q+P+ P+  IWG+L+ AC +Y N+++G  AA+H+F L P   GYY+LLSNIYA+ GR
Sbjct: 572 LIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGR 631

Query: 518 WGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLR 555
           W +  ++R+ M S+G KK PG S V++ DQV       R
Sbjct: 632 WDEANKIRELMKSRGAKKNPGCSWVQIYDQVHAFVAEER 670



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 145/454 (31%), Positives = 230/454 (50%), Gaps = 37/454 (8%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           DI    ++H  ++      ++  +G  L+  YG CG + D R +FDE+  ++VV +N +I
Sbjct: 25  DICKGMEVHG-VVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTII 83

Query: 103 RSYVNNYLYYDALHVYKNMSVHG-FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
                N  Y +A + Y  M +     P+  +   +L   +      +  +IHC  VKVGL
Sbjct: 84  GLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGL 143

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           D  +   N LV  YGKCG +K   +V N+   K+ V+WNS++ G A  GR  +AL+  R 
Sbjct: 144 DSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRM 203

Query: 222 MESLRIKPDADTMASLLPSV--------------------TNTSPENVLSVKEMFLK--- 258
           M     +P++ T++S+LP +                    T T      S+ +M+ K   
Sbjct: 204 MIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGH 263

Query: 259 ----------LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
                     LD +N+VSWN MIA YA N +P EA+   +QM+  G  PNA++  +VLPA
Sbjct: 264 STEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPA 323

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  L  L  G++IH    R  L  +L + N+L+DMYAKCG L  AR VF+  R +D VS+
Sbjct: 324 CARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSR-KDEVSY 382

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
             +I  Y  +     ++ LFS+M + G  PD ++FV V+SAC++   L++G+    +   
Sbjct: 383 NILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALR 442

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
            + L   +     L+D   + G+++ A  L  Q+
Sbjct: 443 NH-LYSHLFVSNSLLDFYTKCGRIDIACRLFNQI 475



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 179/335 (53%), Gaps = 36/335 (10%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M   G   D +T+P VLK CS S  +  G+++H  V K+G D +++ GN L+ +YG CG 
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR--IKPDADTMASLL 238
           L +ARR+ ++MP +DVV+WN+++   + NG + EA +    M  LR  IKP+  ++ SLL
Sbjct: 61  LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWM-ILRSVIKPNLVSVISLL 119

Query: 239 PSVTNTSPE---------------------------------NVLSVKEMFLKLDNKNLV 265
           P       E                                 +V ++ ++F +   KN V
Sbjct: 120 PISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEV 179

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           SWN +I   A      +A++ +  M   G +PN+++++S+LP   +L     G++IH + 
Sbjct: 180 SWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFS 239

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
            R   + ++ + N+L+DMYAK G  TEA T+F  +  +++VSW +MI+ Y ++    +A+
Sbjct: 240 MRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAI 299

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
               +M  +G CP+++ F +VL AC+  G L  G+
Sbjct: 300 RFVIQMQETGECPNAVTFTNVLPACARLGFLGPGK 334



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 127/274 (46%), Gaps = 19/274 (6%)

Query: 214 EALDVCREME------SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSW 267
           ++ D+C+ ME       L    D     +LL    N    N    + +F ++  +++VSW
Sbjct: 22  DSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLN--DARRLFDEMPERDVVSW 79

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           N +I + + N    EA + Y  M +   I+PN +SV S+LP    L    + R+IH Y  
Sbjct: 80  NTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSV 139

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           +  L   +   NALVD Y KCGS+     VF++   ++ VSW S+I+     G+ +DA+ 
Sbjct: 140 KVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALN 199

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YYFKIMTEQYKLVPRIEHFACL 442
            F  M+ +G  P+S+   S+L         + G+    +  ++ TE    +        L
Sbjct: 200 AFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIAN-----SL 254

Query: 443 VDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
           +D+  ++G   EA  +   +    N   W +++A
Sbjct: 255 IDMYAKSGHSTEASTIFHNLD-RRNIVSWNAMIA 287



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 91/188 (48%), Gaps = 5/188 (2%)

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M   G++ +  +   VL  C D   +  G ++H  V +     ++ + N L+ +Y  CG 
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           L +AR +FD+M  +DVVSW ++I    ++G   +A   +  M++  +   ++  VSV+S 
Sbjct: 61  LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNL--VSVISL 118

Query: 410 CSHAGLLEEGRYYFKIMTEQYK--LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
              +  LE+     +I     K  L  ++     LVD  G+ G V+  + +  +  +E N
Sbjct: 119 LPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNE-TVEKN 177

Query: 468 ERIWGSLV 475
           E  W S++
Sbjct: 178 EVSWNSII 185


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 176/528 (33%), Positives = 282/528 (53%), Gaps = 36/528 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           KK+H   +       +  +   L+  Y   G +     VF ++  K+V  +N +I  +  
Sbjct: 141 KKVHC-CVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQ 199

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N     AL V   M   G   D  T   +L  C+ S+ ++ G+ IH  V+K GLD ++F 
Sbjct: 200 NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFV 259

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY K G L++A+ V + M  +D+V+WNS++A Y QN     AL   + M+   I
Sbjct: 260 SNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGI 319

Query: 228 KPDADTMASLLPSVTNTSPENVLS----------------------------------VK 253
           +PD  T+ SL    +  S + +                                      
Sbjct: 320 RPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAH 379

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDL 312
            +F +L  K+ +SWN ++  Y  N + +EA+D Y  M E     PN  +  S++PA   +
Sbjct: 380 TVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHV 439

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
            AL  G KIH  + +  L  ++ +   L+D+Y KCG L +A ++F ++     V W ++I
Sbjct: 440 GALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAII 499

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           ++ G+ G+G +A+ LF  ML   +  D I FVS+LSACSH+GL++EG+  F IM ++Y +
Sbjct: 500 ASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGI 559

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAAD 492
            P ++H+ C+VDLLGRAG +E+AY+L++ MP++P+  IWG+L++AC +Y N ++G LA+D
Sbjct: 560 KPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASD 619

Query: 493 HIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            +  +     GYYVLLSNIYA   +W  V +VR     +G++K PG S
Sbjct: 620 RLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWS 667



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 163/538 (30%), Positives = 270/538 (50%), Gaps = 65/538 (12%)

Query: 11  FSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKL 70
            S  K V     S   +L      N + +   ++   KKLHA +++      N  +  KL
Sbjct: 2   LSLLKSVSKFYKSATTSLHKDADFNALFNSCVNVNATKKLHALLLVFGK-SQNIVLSTKL 60

Query: 71  MRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALH-VYKNMSVHG---F 126
           +  Y   G +  +R  FD I  KN+  +N +I +YV    Y++A++ V +  S+ G    
Sbjct: 61  INLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHL 120

Query: 127 DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR 186
            PD YT+P +LKAC    SL+ G ++HC V K+G + ++F    LV +Y + G L  A +
Sbjct: 121 RPDFYTFPPILKACV---SLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHK 177

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP 246
           V  DMP KDV +WN+M++G+ QNG    AL V   M+   +K D  T+AS+LP    +  
Sbjct: 178 VFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDD 237

Query: 247 ----------------------ENVL-----------SVKEMFLKLDNKNLVSWNVMIAV 273
                                  N L             + +F +++ ++LVSWN +IA 
Sbjct: 238 VINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAA 297

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK-LQP 332
           Y  N+ P+ A+  +  M++ GI P+ ++V S+      LS   + R I  +V R++ L  
Sbjct: 298 YEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDK 357

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           ++ + NALV+MYAK G +  A TVFDQ+  +D +SW ++++ Y  +G   +A+  ++ M 
Sbjct: 358 DVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMM- 416

Query: 393 MSGLCPDSI----AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLL 446
               C D+I     +VS++ A SH G L++G    KI  +  K    ++ F   CL+DL 
Sbjct: 417 --EECRDTIPNQGTWVSIIPAYSHVGALQQG---MKIHAKLIKNSLYLDVFVATCLIDLY 471

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVA----------ACCLYSNMDIGILAADHI 494
           G+ G++E+A  L  ++P + +   W +++A          A  L+ +M    + ADHI
Sbjct: 472 GKCGRLEDAMSLFYEIPRDTSVP-WNAIIASLGIHGRGEEALQLFKDMLAERVKADHI 528


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 178/563 (31%), Positives = 299/563 (53%), Gaps = 66/563 (11%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG-ACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++ +KKLHA ++++  LH+      K++R+Y      +V    VF++I +     +N L+
Sbjct: 324 MEAVKKLHAHLVVSG-LHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTLL 382

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
           R    +    DA+  YK     G  PD  T+P VLKAC+ + +   G Q+H  V+K+G  
Sbjct: 383 RGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFL 442

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++F  N L+ +Y  CG L  AR + ++M  KDVV+WNS++ GY+Q  RF E L +   M
Sbjct: 443 LDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELM 502

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVL-------------------------------- 250
           ++  ++ D  TM  ++ + T+    ++                                 
Sbjct: 503 QAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQL 562

Query: 251 -SVKEMFLKLDNKNLV-------------------------------SWNVMIAVYANNS 278
            S +++F ++ +KN V                               SW+ MI  Y+  S
Sbjct: 563 QSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQAS 622

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
             +++++L+ QM+   ++P+A+ +ASVL AC  L AL LG+ IH YV R  ++ +  +EN
Sbjct: 623 HFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMEN 682

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           +L+DM+AKCG + EA  VF +M  +D +SW S+I     +G   +A+ +F  ML  G  P
Sbjct: 683 SLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRP 742

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           + + F+ VL AC++  L++EG  +F+ M   + L P+++H+ C+V +L RAG++E+A + 
Sbjct: 743 NEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKNF 802

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
           I +MP+ P+  +W  L+ AC  + N+ +  +A   +  L P+ SG Y+LLSNIYA A RW
Sbjct: 803 INEMPLAPDPVVWRILLGACKTHGNVAVAEVATKKLSELDPSNSGDYMLLSNIYASADRW 862

Query: 519 GDVKRVRKFMNSKGIKKMPGASV 541
            D   VR++M    ++K P  SV
Sbjct: 863 SDALNVRQWMADTAVRKSPACSV 885



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 122/349 (34%), Positives = 201/349 (57%), Gaps = 38/349 (10%)

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL 250
           MP K+VV+WN ++ G+A  G          E+E  R+                       
Sbjct: 1   MPMKNVVSWNVVITGFAGWG----------EIEYARL----------------------- 27

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
               +F ++  +N+VSW  +I  Y    + AEAV L+  M   GI P+ I+V +V+PA  
Sbjct: 28  ----LFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVVPAIS 83

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM-RCQDVVSWT 369
           +L  +L+G  +H Y  +K +  + R+ N+L+D+YAK GS+  +  VFD+M   +++VSWT
Sbjct: 84  NLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWT 143

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           S+IS + M G   +A+ LF++M  +G+ P+ I F+SV++ACSH GL+E+G  +FK M  +
Sbjct: 144 SIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYE 203

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y + P I+HF C++D+LGRAG++ EA  +I+ +P+E N  +W  L+  C  Y  +++G  
Sbjct: 204 YNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVEMGKR 263

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
           A   I  L     G + +LSN+  + GR+ D ++ RK ++ + I K+PG
Sbjct: 264 AIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERKIVKVPG 312



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 118/245 (48%), Gaps = 4/245 (1%)

Query: 1   MKAVVLLCRHFSTTKPVQALVLSTQYTLLSGDA--CNDILDKYPDIKTLKKLHAQIIINQ 58
           M  V+  C H         +V   +   +  D    N ++D Y  I  L+   A+ + +Q
Sbjct: 514 MVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQS--AEKVFSQ 571

Query: 59  HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVY 118
               N      ++  Y   G +V  + +FD+I NK+++ ++ +I +Y     + D+L ++
Sbjct: 572 MKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELF 631

Query: 119 KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC 178
           + M      PD      VL AC+   +L +G  IH  V +  +  +    N L+ M+ KC
Sbjct: 632 RQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKC 691

Query: 179 GCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238
           GC++EA +V  +M  KD ++WNS++ G A NG  DEAL++   M +   +P+  T   +L
Sbjct: 692 GCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNEVTFLGVL 751

Query: 239 PSVTN 243
            +  N
Sbjct: 752 IACAN 756



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 93/416 (22%), Positives = 175/416 (42%), Gaps = 70/416 (16%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           +   G++   R +FD++  +NVV +  LI  Y    LY +A+ ++++M   G  P   T 
Sbjct: 16  FAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITV 75

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM-P 192
             V+ A S    +L+G  +H   VK G+  +   GN L+ +Y K G ++ + +V ++M  
Sbjct: 76  LAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLD 135

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT---------- 242
            +++V+W S+++G+A +G   EAL++  EM    I+P+  T  S++ + +          
Sbjct: 136 RRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLA 195

Query: 243 ---------NTSPE---------------NVLSVKEMFLKLDNK-NLVSWNVMIAV---Y 274
                    N  PE                +   +++   L  + N++ W +++     Y
Sbjct: 196 FFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKY 255

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS--------------------A 314
               M   A+ +   +E       A+ +++VL   G  S                    A
Sbjct: 256 GEVEMGKRAIKMISDLERESGGDFAV-LSNVLNELGRFSDAEQARKLLDERKIVKVPGLA 314

Query: 315 LLLGRKIHRYVERKKLQPNLRLE---------NALVDMYA-KCGSLTEARTVFDQMRCQD 364
           L++ R        KKL  +L +          + ++  YA +   L  A  VF+Q+    
Sbjct: 315 LVVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPT 374

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
              W +++     S    DA+  + K    G+ PD++ F  VL AC+     +EG 
Sbjct: 375 TFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGE 430



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 124/270 (45%), Gaps = 45/270 (16%)

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           N+ + N ++  +   G ++ AR + + MP ++VV+W  ++ GY +   + EA+ + R M 
Sbjct: 5   NVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMM 64

Query: 224 SLRIKPDADTMASLLPSVTNT------------------------------------SPE 247
           +  I P   T+ +++P+++N                                     S +
Sbjct: 65  AGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQ 124

Query: 248 NVLSV-KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
           N L V  EM   LD +NLVSW  +I+ +A + +  EA++L+ +M   GI PN I+  SV+
Sbjct: 125 NSLKVFDEM---LDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVI 181

Query: 307 PACGDLSALLLGRKIHR-YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-D 364
            AC     +  G    +  V    + P ++    ++DM  + G L EA  + + +  + +
Sbjct: 182 NACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVN 241

Query: 365 VVSWTSMI---SAYGMSGQGYDAVALFSKM 391
           V+ W  ++   S YG    G  A+ + S +
Sbjct: 242 VIVWRILLGCCSKYGEVEMGKRAIKMISDL 271


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 176/509 (34%), Positives = 288/509 (56%), Gaps = 44/509 (8%)

Query: 86  VFDEITNKNVVF-FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
           +F+   +K  VF +N +I     +    +AL  + +M      P   ++PC +KACS   
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
            +  G Q H      G   ++F  + L+ MY  CG L++AR+V +++P +D+V+W SM+ 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIR 150

Query: 205 GYAQNGRFDEALDVCREM-------------------------------------ESLRI 227
           GY  NG   +A+ + +++                                      S  I
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVI 210

Query: 228 KPDADTMAS----LLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
           K   D   S    LL +        V   +++F ++ +K+ VS+N +++VYA + M  EA
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEA 270

Query: 284 VDLYLQMEVHGIEP-NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
            +++ ++  + +   NAI++++VL A     AL +G+ IH  V R  L+ ++ +  +++D
Sbjct: 271 FEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIID 330

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MY KCG +  AR  FD+M+ ++V SWT+MI+ YGM G    A+ LF  M+ SG+ P+ I 
Sbjct: 331 MYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYIT 390

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           FVSVL+ACSHAGL  EG  +F  M  ++ + P +EH+ C+VDLLGRAG +++AYDLI++M
Sbjct: 391 FVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRM 450

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
            M+P+  IW SL+AAC ++ N+++  ++   +F L  +  GYY+LLS+IYA AGRW DV+
Sbjct: 451 KMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVE 510

Query: 523 RVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           RVR  M ++G+ K PG S +E+N +V + 
Sbjct: 511 RVRMIMKNRGLVKPPGFSLLELNGEVHVF 539



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 187/386 (48%), Gaps = 49/386 (12%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC+ + D    I + K+ H Q  +  +  S+  +   L+  Y  CG++ D R VFDEI  
Sbjct: 85  ACSSLFD----IFSGKQTHQQAFVFGY-QSDIFVSSALIVMYSTCGKLEDARKVFDEIPK 139

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY------PCVLKACSGSNSL 146
           +++V +  +IR Y  N    DA+ ++K++ V   D D   +        V+ ACS   + 
Sbjct: 140 RDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAK 199

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC--GCLKEARRVLNDMPSKDVVTWNSMVA 204
            +   IH  V+K G D  +  GN L+  Y K   G +  AR++ + +  KD V++NS+++
Sbjct: 200 GLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMS 259

Query: 205 GYAQNGRFDEALDVCREMESLRIKP-DADTMASLLPSVTNTSP----------------- 246
            YAQ+G  +EA +V R +   ++   +A T++++L +V+++                   
Sbjct: 260 VYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLE 319

Query: 247 ----------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
                             V + ++ F ++ NKN+ SW  MIA Y  +   A+A++L+  M
Sbjct: 320 DDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAM 379

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLG-RKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
              G+ PN I+  SVL AC      + G R  +    R  ++P L     +VD+  + G 
Sbjct: 380 IDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGF 439

Query: 350 LTEARTVFDQMRCQ-DVVSWTSMISA 374
           L +A  +  +M+ + D + W+S+++A
Sbjct: 440 LQKAYDLIQRMKMKPDSIIWSSLLAA 465



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 105/194 (54%), Gaps = 11/194 (5%)

Query: 233 TMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
           +++ LL +  +T  +N+ ++   ++  D  ++ SWN +IA  A +   AEA+  +  M  
Sbjct: 12  SVSRLLHTERHTERQNLTTLFNRYV--DKTDVFSWNSVIADLARSGDSAEALLAFSSMRK 69

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
             + P   S    + AC  L  +  G++ H+       Q ++ + +AL+ MY+ CG L +
Sbjct: 70  LSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLED 129

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM------SGLCPDSIAFVSV 406
           AR VFD++  +D+VSWTSMI  Y ++G   DAV+LF  +L+        +  DS+  VSV
Sbjct: 130 ARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSV 189

Query: 407 LSACSHA---GLLE 417
           +SACS     GL E
Sbjct: 190 ISACSRVPAKGLTE 203



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 144/295 (48%), Gaps = 24/295 (8%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTY--GACGQMVDTRHVFDEITNKNVVF 97
           + P     + +H+  +I +      S+G  L+  Y  G  G +   R +FD+I +K+ V 
Sbjct: 195 RVPAKGLTESIHS-FVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS 253

Query: 98  FNVLIRSYVNNYLYYDALHVYKNM---SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
           +N ++  Y  + +  +A  V++ +    V  F+    T   VL A S S +L +G  IH 
Sbjct: 254 YNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNA--ITLSTVLLAVSHSGALRIGKCIHD 311

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            V+++GL+ ++  G  ++ MY KCG ++ AR+  + M +K+V +W +M+AGY  +G   +
Sbjct: 312 QVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAK 371

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTS--PENVLSVKEMFLKLD-NKNLVSWNVMI 271
           AL++   M    ++P+  T  S+L + ++     E       M  +      L  +  M+
Sbjct: 372 ALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMV 431

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
            +        +A DL  +M+   ++P++I  +S+L AC          +IH+ VE
Sbjct: 432 DLLGRAGFLQKAYDLIQRMK---MKPDSIIWSSLLAAC----------RIHKNVE 473


>gi|293333548|ref|NP_001170485.1| uncharacterized protein LOC100384484 [Zea mays]
 gi|238005588|gb|ACR33829.1| unknown [Zea mays]
 gi|413920755|gb|AFW60687.1| hypothetical protein ZEAMMB73_143396 [Zea mays]
          Length = 569

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 180/535 (33%), Positives = 285/535 (53%), Gaps = 39/535 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
            ++ L  +HA+ I+   + +NP+    L+    A   +   R VFD    ++   +N L+
Sbjct: 33  SLRALLPIHARAIV-LGVSANPAFATSLLAGV-APASLAYARRVFDATPVRDAYMWNTLL 90

Query: 103 RSYVNNYLYY--DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           R++ ++ L +  D L +YK M   G  PD YTYP VL AC+ +  L +G  +H  VV+  
Sbjct: 91  RAHSHSQLSHAADTLALYKRMRAAGVAPDHYTYPIVLPACAAARELWLGRAVHGDVVRFA 150

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDM--PSKDVVTWNSMVAGYAQNGRFDEALDV 218
           L  + F  + L+ MY + G + +A  V  +    S+ VV+W SMVAGY QN  F EA+ +
Sbjct: 151 LAGDGFVHSALITMYFQEGEVADAELVFAESHGSSRTVVSWTSMVAGYVQNYYFGEAVAL 210

Query: 219 CREMESLRIKPDADTMASLLPSV----------------------TNTSPENVL------ 250
              M +  + P+  T+ S LP +                       N    N L      
Sbjct: 211 FGTMIAEGVLPNEITLISFLPCLQGQEWLDAGEMVHGFVIRLGFDANIPLANALIAMYGK 270

Query: 251 -----SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                  + +F  +  ++L SWN M+A+Y  ++   EA+  + +M    +  + +++ SV
Sbjct: 271 CGSIPMAQTLFEGMPARSLASWNTMVAMYEQHADVVEAIKFFRRMLTEKVGFDCVTLVSV 330

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L AC    AL  G+ +H       L  + R+ N LVDMYAKCG +  AR VFD +R + V
Sbjct: 331 LSACARSGALQTGKWVHELARNHGLDTDARIGNVLVDMYAKCGEIASARNVFDCLRMRSV 390

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           VSW++MISAY   G   +A+ LFS M   G+ P+S  F +VL AC H+GL+EEG  +F  
Sbjct: 391 VSWSAMISAYANHGASEEALKLFSLMKNEGVRPNSFTFTAVLVACGHSGLVEEGLKHFNS 450

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           +   Y++ P +EH+AC+VD+LGRAG++ EAY++I+ M + P++ +WG+ +A C L+ N++
Sbjct: 451 ILSDYQMSPTLEHYACMVDMLGRAGRLIEAYEIIRGMSLCPDKCVWGAFLAGCKLHGNLE 510

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           +    A  +F    N   +YVL+SN+Y +AG   D +R+R  M    + K  G S
Sbjct: 511 LAEFVARDLFQSGSNDVTFYVLMSNMYFEAGMLKDAERMRWAMKEMELNKTAGRS 565


>gi|224107543|ref|XP_002314516.1| predicted protein [Populus trichocarpa]
 gi|222863556|gb|EEF00687.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 192/555 (34%), Positives = 299/555 (53%), Gaps = 47/555 (8%)

Query: 41  YPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           +  +K  ++ HA+I+ +     NP +  KL+  Y   G    +R VFD +  K+V  +N 
Sbjct: 40  HKSLKLTQQCHARIL-SLGFTQNPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNS 98

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           LI  +V N  Y +A   +  M   G   D YT   + K C     L  G  IH   +K G
Sbjct: 99  LINGFVKNRAYNEAFGWFYQMCCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTG 158

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG--RFD-EALD 217
              ++   N L++MY KCG   E  ++ ++MP ++V +WN +++GYA +G   FD E   
Sbjct: 159 FVLDVIVANSLMSMYSKCGGFGECLKLFDEMPERNVGSWNVILSGYADSGDRNFDKEVSG 218

Query: 218 VCREMESLRIKPDADTMASLLP---------------------------SVTNT------ 244
             ++M+   +KPDA T++SLL                            S T        
Sbjct: 219 FVKDMQIEGLKPDAFTVSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCL 278

Query: 245 ----SPENVLSV-KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPN 298
               S  N + V + +F +++ +N+ +W  MI  +  N    E + L+ +M+V  G+EPN
Sbjct: 279 IDMYSRSNRVDVGRRVFDRMECRNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEPN 338

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
            +S+ SVLPAC  ++ L   ++IH Y  RK+   ++ L NAL+DMY+KCGSL  A+ VF+
Sbjct: 339 KVSLVSVLPACSAVAGLTGVKQIHGYAIRKQFNNDVSLCNALIDMYSKCGSLDHAKQVFE 398

Query: 359 --QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL 416
               R +D +SW+SMIS YG+ G+G +AV +++KML  G  PD I  V VLSACS AGL+
Sbjct: 399 FGSFR-RDPISWSSMISGYGLHGKGEEAVFVYNKMLQLGNKPDMITIVGVLSACSRAGLV 457

Query: 417 EEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
           +EG   +K    +Y++ P +E  AC+VD+LGR+G++ +A D IK MPMEP+  +WG++V+
Sbjct: 458 DEGLCIYKSAINKYRIKPTVEICACVVDMLGRSGQLGQALDYIKTMPMEPSPSVWGAVVS 517

Query: 477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKM 536
           A  ++ N ++  LA   +  L P     YV LSN++A + RW  V  VR  M  + + K 
Sbjct: 518 ASIIHGNSEMQDLAYRFLVQLEPENPSNYVSLSNLHASSRRWDVVSEVRTMMKDRCLTKT 577

Query: 537 PGAS-VEMNDQVQII 550
           PG S + +N+     
Sbjct: 578 PGCSWISINNTTHFF 592


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 172/504 (34%), Positives = 265/504 (52%), Gaps = 33/504 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y     +   R VF+ I ++NVV +  +I   V N    D L ++  M      P 
Sbjct: 206 LVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPS 265

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            YT   V+ ACS    L  G  +H SV+K GL  N F    L+ MY KCG L  AR V +
Sbjct: 266 EYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFD 325

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP--- 246
           ++   D+V W +M+ GY QNG   +AL +  +     I P++ T A++L +         
Sbjct: 326 ELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSL 385

Query: 247 ------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                         + V     +F ++ NK++V+WN MI+ YA 
Sbjct: 386 GKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAE 445

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N+M  +A+ L+ QM + G  P+AISV + L A   L  LL+G+ IH Y  +     N+ +
Sbjct: 446 NNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYV 505

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
           + AL+++Y KCG L  AR VFD+M  ++ V+W +MI  YGM G    ++ LF +ML  G+
Sbjct: 506 DTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGV 565

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P+ IAF S+LS CSH+G++  G+ YF  M + + + P ++H+AC+VD+L RAG +E+A 
Sbjct: 566 YPNDIAFTSILSTCSHSGMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEDAL 625

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           + I  MPM+ +  +WG+ +  C L+S +     A   +  L P +   YVL+SN+Y   G
Sbjct: 626 EFIDNMPMQADTSVWGAFLHGCELHSRLQFAEEAIKRMMVLHPERPDLYVLISNLYTSNG 685

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS 540
            W     +R++M  KG+ K+PG S
Sbjct: 686 MWDKSLAIRRWMQEKGLVKLPGCS 709



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 139/486 (28%), Positives = 228/486 (46%), Gaps = 44/486 (9%)

Query: 33  ACNDILDKYPDIKTL---KKLHAQIIINQH--LHSNPSIGLKLMRTYGACGQMVDTRHVF 87
           +  D+L   P   TL   + LHA+++ +    L  +     KL+  Y A G +   R VF
Sbjct: 61  SAGDLLRLLPSCGTLLSLRVLHARLLTHPQGLLLGSLRARTKLLSCYAALGDLASARMVF 120

Query: 88  DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP---DCYTYPCVLKACSGSN 144
           D     +   +  ++   V    + DA+ ++ +M      P   D +     LKAC  S 
Sbjct: 121 DGTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCPEAQDDFVLSLALKACIRSA 180

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
               G  +HC  +KVG   + F  N LV MY K   L+ AR+V   +P ++VV+W SM++
Sbjct: 181 EYSYGRSLHCDAIKVG-GADGFVMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMIS 239

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT-------------NTSPENVLS 251
           G  QNG   + L +  +M    + P   T+A+++ + +             +   + ++S
Sbjct: 240 GCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMS 299

Query: 252 -------VKEMFLK---LDNK----------NLVSWNVMIAVYANNSMPAEAVDLYLQME 291
                  + +M++K   LD+           +LV W  MI  Y  N  P +A+ L+L   
Sbjct: 300 NSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKR 359

Query: 292 VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351
              I PN+++ A+VL A   L  L LG+ IH    +  L     + NALVDMYAKC +++
Sbjct: 360 FANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVS 419

Query: 352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
           EA  +F ++  +DVV+W SMIS Y  +  G DA+ LF +M + G  PD+I+ V+ LSA  
Sbjct: 420 EADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASV 479

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIW 471
             G L  G+        ++  V  I     L++L  + G +  A  +  +M  + N   W
Sbjct: 480 CLGDLLIGKSIHGYAV-KHAFVSNIYVDTALLNLYNKCGDLLSARRVFDEMN-DRNSVTW 537

Query: 472 GSLVAA 477
            +++  
Sbjct: 538 CAMIGG 543



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 170/354 (48%), Gaps = 37/354 (10%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           +I Q L SN  I   L+  Y  CG++   R VFDE++  ++V +  +I  Y  N    DA
Sbjct: 292 VIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQNGNPLDA 351

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL-DYNLFNGNGLVA 173
           L ++ +       P+  T   VL A +    L +G  IH   VK+GL +YN+  GN LV 
Sbjct: 352 LRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNVV-GNALVD 410

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MY KC  + EA R+   + +KDVV WNSM++GYA+N   D+AL + ++M      PDA +
Sbjct: 411 MYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSSPDAIS 470

Query: 234 MASLLPS----------------------VTNTSPE-----------NVLSVKEMFLKLD 260
           + + L +                      V+N   +           ++LS + +F +++
Sbjct: 471 VVNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFDEMN 530

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
           ++N V+W  MI  Y      A ++ L+ +M   G+ PN I+  S+L  C     +  G++
Sbjct: 531 DRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCSHSGMVTAGKR 590

Query: 321 -IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMI 372
                 +   + P+++    +VD+ A+ G+L +A    D M  Q D   W + +
Sbjct: 591 YFDSMAQHFNITPSMKHYACMVDVLARAGNLEDALEFIDNMPMQADTSVWGAFL 644



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 7/221 (3%)

Query: 24  TQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT 83
           T  T+LS  A      +  D+   K +H  + +   L     +G  L+  Y  C  + + 
Sbjct: 369 TTATVLSASA------QLRDLSLGKSIHG-LAVKLGLVEYNVVGNALVDMYAKCQAVSEA 421

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
             +F  I+NK+VV +N +I  Y  N +  DAL ++K MS+ G  PD  +    L A    
Sbjct: 422 DRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCL 481

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
             LL+G  IH   VK     N++    L+ +Y KCG L  ARRV ++M  ++ VTW +M+
Sbjct: 482 GDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMI 541

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
            GY   G    ++ +  EM    + P+     S+L + +++
Sbjct: 542 GGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCSHS 582



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 87/191 (45%), Gaps = 4/191 (2%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   K +H   + +  + SN  +   L+  Y  CG ++  R VFDE+ ++N V +  +I
Sbjct: 483 DLLIGKSIHGYAVKHAFV-SNIYVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMI 541

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGL 161
             Y        ++H++  M   G  P+   +  +L  CS S  +  G +   S+ +   +
Sbjct: 542 GGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCSHSGMVTAGKRYFDSMAQHFNI 601

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCR 220
             ++ +   +V +  + G L++A   +++MP + D   W + + G   + R   A +  +
Sbjct: 602 TPSMKHYACMVDVLARAGNLEDALEFIDNMPMQADTSVWGAFLHGCELHSRLQFAEEAIK 661

Query: 221 EMESLRI-KPD 230
            M  L   +PD
Sbjct: 662 RMMVLHPERPD 672



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 16/182 (8%)

Query: 305 VLPACGDLSALLLGRKIH-RYVERKK--LQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           +LP+CG L +L   R +H R +   +  L  +LR    L+  YA  G L  AR VFD   
Sbjct: 68  LLPSCGTLLSL---RVLHARLLTHPQGLLLGSLRARTKLLSCYAALGDLASARMVFDGTP 124

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP---DSIAFVSVLSACSHAGLLEE 418
             D  S+ +M+     + +  DAVAL   M     CP   D       L AC  +     
Sbjct: 125 RPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCPEAQDDFVLSLALKACIRSAEYSY 184

Query: 419 GRYYFKIMTEQYKLVPRIEHFA--CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
           GR    +  +  K V   + F    LVD+  +A  +E A  + +++P + N   W S+++
Sbjct: 185 GR---SLHCDAIK-VGGADGFVMNSLVDMYAKAEDLECARKVFERIP-DRNVVSWTSMIS 239

Query: 477 AC 478
            C
Sbjct: 240 GC 241


>gi|15231917|ref|NP_188091.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274207|sp|Q9LUC2.1|PP231_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14730
 gi|9294394|dbj|BAB02404.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642039|gb|AEE75560.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 653

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 182/538 (33%), Positives = 293/538 (54%), Gaps = 44/538 (8%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D  + +++H  ++    L  +P  G  L+  Y  CG M     VF   + ++V  +N LI
Sbjct: 75  DYVSGQQIHGFMVRKGFLDDSPRAGTSLVNMYAKCGLMRRAVLVFGG-SERDVFGYNALI 133

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG--LQIHCSVVKVG 160
             +V N    DA+  Y+ M  +G  PD YT+P +LK   GS+++ +    ++H    K+G
Sbjct: 134 SGFVVNGSPLDAMETYREMRANGILPDKYTFPSLLK---GSDAMELSDVKKVHGLAFKLG 190

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD-VVTWNSMVAGYAQNGRFDEALDVC 219
            D + + G+GLV  Y K   +++A++V +++P +D  V WN++V GY+Q  RF++AL V 
Sbjct: 191 FDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQIFRFEDALLVF 250

Query: 220 REMESLRIKPDADTMASLLPSVT------NTSPENVLSVK-------------------- 253
            +M    +     T+ S+L + T      N    + L+VK                    
Sbjct: 251 SKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAVKTGSGSDIVVSNALIDMYGKS 310

Query: 254 -------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
                   +F  +D ++L +WN ++ V+         + L+ +M   GI P+ +++ +VL
Sbjct: 311 KWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFERMLCSGIRPDIVTLTTVL 370

Query: 307 PACGDLSALLLGRKIHRYVERKKL----QPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
           P CG L++L  GR+IH Y+    L      N  + N+L+DMY KCG L +AR VFD MR 
Sbjct: 371 PTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSMRV 430

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           +D  SW  MI+ YG+   G  A+ +FS M  +G+ PD I FV +L ACSH+G L EGR +
Sbjct: 431 KDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHSGFLNEGRNF 490

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
              M   Y ++P  +H+AC++D+LGRA K+EEAY+L    P+  N  +W S++++C L+ 
Sbjct: 491 LAQMETVYNILPTSDHYACVIDMLGRADKLEEAYELAISKPICDNPVVWRSILSSCRLHG 550

Query: 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           N D+ ++A   +  L P   G YVL+SN+Y +AG++ +V  VR  M  + +KK PG S
Sbjct: 551 NKDLALVAGKRLHELEPEHCGGYVLMSNVYVEAGKYEEVLDVRDAMRQQNVKKTPGCS 608


>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
          Length = 751

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 178/553 (32%), Positives = 296/553 (53%), Gaps = 41/553 (7%)

Query: 34  CNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRT----------YGACGQMVDT 83
           C  +L +      L ++HA ++ N  L +NP++  K + T          Y     +V  
Sbjct: 155 CLSLLQQSKTRANLLQIHAFMLRNA-LETNPNLFTKFIATCSSIALLAPLYDPLAGIVHA 213

Query: 84  RHVFDEITNKNVVFF-NVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACS 141
           R +FD   +++  F  N +I++YV    Y ++  +Y+++  +  F PD +T+  + K+C+
Sbjct: 214 RRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCA 273

Query: 142 GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNS 201
            + ++  G +IH  VV VG   +L+    LV MY K G +  AR++ ++M  +  V+W +
Sbjct: 274 LNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTA 333

Query: 202 MVAGYAQNGRFDEAL-------------------------DVCREMESLRIKPDADTMAS 236
           ++ GY ++G  D A                          D+C   +     P+   ++ 
Sbjct: 334 LIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSW 393

Query: 237 LLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME-VHGI 295
            +     +S  N+ S + +F  +  KNL SWN MI+ Y  N  P EA+ L+ +M+    +
Sbjct: 394 TIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSL 453

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
           EP+ +++ SVLPA  DL AL LG  +HR+V RKKL     +  AL+DMYAKCG + ++R 
Sbjct: 454 EPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRG 513

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           VFD M  ++  SW ++I+A+ ++G+  +A+ LF +M   G  P+ I  + VLSAC+H+GL
Sbjct: 514 VFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGL 573

Query: 416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
           +EEG+ +FK M E++ L P+IEH+ C+VDLLGRAG ++EA  L++ MP E N  I  S +
Sbjct: 574 VEEGKRWFKAM-EEFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSFL 632

Query: 476 AACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK 535
            AC    ++            +     G Y++L N+YA   RW +   V+  M   G+KK
Sbjct: 633 FACGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYANEKRWKEADEVKGLMRRNGVKK 692

Query: 536 MPGAS-VEMNDQV 547
             G S +E++ +V
Sbjct: 693 EAGCSAIEVDSRV 705


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 176/506 (34%), Positives = 280/506 (55%), Gaps = 68/506 (13%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNK-----------------------------------N 94
           +   Y  CG+M D R VFD +++K                                   N
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEAN 216

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
           +V +N ++  +  +  + +A+ +++ +   GF PD  T   VL +   S  L +G  IH 
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHG 276

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            V+K GL  +    + ++ MYGK G +     + N     +    N+ + G ++NG  D+
Sbjct: 277 YVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDK 336

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
           AL    EM  L                           KE  ++L   N+VSW  +IA  
Sbjct: 337 AL----EMFEL--------------------------FKEQTMEL---NVVSWTSIIAGC 363

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           A N    EA++L+ +M+V G++PN +++ S+LPACG+++AL  GR  H +  R  L  N+
Sbjct: 364 AQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNV 423

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + +AL+DMYAKCG +  ++ VF+ M  +++V W S+++ + M G+  + +++F  ++ +
Sbjct: 424 HVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRT 483

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
            L PD I+F S+LSAC   GL +EG  YFK+M+E+Y + PR+EH++C+V+LLGRAGK++E
Sbjct: 484 RLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQE 543

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           AYDLIK+MP EP+  +WG+L+ +C L +N+D+  +AA+ +FHL P   G YVLLSNIYA 
Sbjct: 544 AYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAA 603

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS 540
            G W +V  +R  M S G+KK PG S
Sbjct: 604 KGMWTEVDSIRNKMESLGLKKNPGCS 629



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/460 (25%), Positives = 209/460 (45%), Gaps = 71/460 (15%)

Query: 51  HAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYL 110
           HA+I+      ++  I  KL+ +Y       D   V   I +  +  F+ LI +     L
Sbjct: 38  HARIL-KSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKL 96

Query: 111 YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG 170
           +  ++ V+  M  HG  PD +  P + K C+  ++  VG QIHC     GLD + F    
Sbjct: 97  FTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGS 156

Query: 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
           +  MY +CG + +AR+V + M  KDVVT ++++  YA+ G  +E + +  EMES  I+  
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA- 215

Query: 231 ADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
                                           N+VSWN +++ +  +    EAV ++ ++
Sbjct: 216 --------------------------------NIVSWNGILSGFNRSGYHKEAVVMFQKI 243

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
              G  P+ ++V+SVLP+ GD   L +GR IH YV ++ L  +  + +A++DMY K G +
Sbjct: 244 HHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHV 303

Query: 351 TEARTVFDQMRCQD-----------------------------------VVSWTSMISAY 375
               ++F+Q    +                                   VVSWTS+I+  
Sbjct: 304 YGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGC 363

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
             +G+  +A+ LF +M ++G+ P+ +   S+L AC +   L  GR         + L+  
Sbjct: 364 AQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVH-LLDN 422

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
           +   + L+D+  + G++  +  +   MP + N   W SL+
Sbjct: 423 VHVGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLM 461



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 57/277 (20%), Positives = 114/277 (41%), Gaps = 50/277 (18%)

Query: 59  HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVY 118
           HL  N  +G  L+  Y  CG++  ++ VF+ +  KN+V +N L+  +  +    + + ++
Sbjct: 418 HLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIF 477

Query: 119 KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ-IHCSVVKVGLDYNLFNGNGLVAMYGK 177
           +++      PD  ++  +L AC        G +       + G+   L + + +V + G+
Sbjct: 478 ESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGR 537

Query: 178 CGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS 236
            G L+EA  ++ +MP + D   W ++             L+ CR    L+   D   +A+
Sbjct: 538 AGKLQEAYDLIKEMPFEPDSCVWGAL-------------LNSCR----LQNNVDLAEIAA 580

Query: 237 LLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE 296
                            E    L+ +N  ++ ++  +YA   M  E   +  +ME  G++
Sbjct: 581 -----------------EKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLK 623

Query: 297 PNAISVASVLPACGDLS------ALLLGRKIHRYVER 327
            N        P C  +        LL G K H  +++
Sbjct: 624 KN--------PGCSWIQVKNRVYTLLAGDKSHPQIDQ 652


>gi|449464466|ref|XP_004149950.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101216349
            [Cucumis sativus]
          Length = 1830

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 172/507 (33%), Positives = 285/507 (56%), Gaps = 12/507 (2%)

Query: 48   KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
            +K+H QI+      S    GL  M  YG CGQ+  +  VF+EI +KNVV +  +I  YV 
Sbjct: 1238 RKVHCQIVKVGGPDSFVMTGLIDM--YGKCGQVECSSAVFEEIMDKNVVSWTSMIAGYVQ 1295

Query: 108  NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
            N    + L ++  M     + + +T   ++ A +   +L  G  +H   +K   + + F 
Sbjct: 1296 NNCAEEGLVLFNRMRDALVESNPFTLGSIINAFTKLRALHQGKWVHGYAIKNIAELSSFL 1355

Query: 168  GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
                + MY KCG  ++AR + +++P+ D+V+W  M+ GY Q  + ++ L +  +     +
Sbjct: 1356 ATTFLDMYVKCGQTRDARMIYDELPTIDLVSWTVMIVGYTQARQPNDGLRLFADEIRSDL 1415

Query: 228  KPDADTMASLLPSVTNTSP--------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSM 279
             P++  +      V   +           +     +F  +  K++++WN MI+ YA N  
Sbjct: 1416 LPNSALLQVFFQRVRFLNALIDMYAKCHTISDAYAIFHGVLEKDVITWNSMISGYAQNGS 1475

Query: 280  PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY-VERKKLQPNLRLEN 338
              +A+ L+ QM  + + P+AI++ S L A   L A+ +G  +H Y V+      NL +  
Sbjct: 1476 AYDALRLFNQMRSYSLAPDAITLVSTLSASATLGAIQVGSSLHAYSVKGGLFSSNLYIGT 1535

Query: 339  ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
            AL++ YAKCG    AR VFD M  +++++W++MI  YG+ G G  ++++FS ML   L P
Sbjct: 1536 ALLNFYAKCGDARSARMVFDSMGVKNIITWSAMIGGYGVQGDGSGSLSIFSNMLKEDLKP 1595

Query: 399  DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
            + + F +VLSACS++G++EEG  YFK M + Y  VP ++H+AC+VDLL R+GK++EA D 
Sbjct: 1596 NEVIFTTVLSACSYSGMVEEGGRYFKSMIQDYNFVPSMKHYACMVDLLARSGKLDEALDF 1655

Query: 459  IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
            IK+MP++ +  ++G+ +  C LYS  D+G +    +  L  N++ YYVL+SN+YA  G+W
Sbjct: 1656 IKKMPVQRDVSLYGAFLHGCGLYSRFDLGEVVVREMLQLHRNEACYYVLVSNLYASDGKW 1715

Query: 519  GDVKRVRKFMNSKGIKKMPGAS-VEMN 544
            G V  VR  M  +G+ K+PG S VE N
Sbjct: 1716 GQVNEVRDLMLQRGLNKVPGYSLVETN 1742



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/410 (30%), Positives = 200/410 (48%), Gaps = 60/410 (14%)

Query: 43   DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
            +I TL K H  +I++  L  N     KL+  YGA G +   R VFD++ N +   + V+I
Sbjct: 1132 NIDTLIKFHGLLIVHG-LIGNLLCDTKLVGVYGALGDVRSARMVFDQMPNPDFYAWKVMI 1190

Query: 103  RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            R Y  N L+ D +  Y  M +   + D   +  +LKACS    ++ G ++HC +VKVG  
Sbjct: 1191 RWYFLNDLFVDVIPFYNRMRMSFRECDNIIFSIILKACSELREIVEGRKVHCQIVKVG-G 1249

Query: 163  YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
             + F   GL+ MYGKCG ++ +  V  ++  K+VV+W SM+AGY QN   +E L +   M
Sbjct: 1250 PDSFVMTGLIDMYGKCGQVECSSAVFEEIMDKNVVSWTSMIAGYVQNNCAEEGLVLFNRM 1309

Query: 223  ESLRIKPDADTMASLLPSVTNTSP------------ENVLSVK--------EMFLK---- 258
                ++ +  T+ S++ + T                +N+  +         +M++K    
Sbjct: 1310 RDALVESNPFTLGSIINAFTKLRALHQGKWVHGYAIKNIAELSSFLATTFLDMYVKCGQT 1369

Query: 259  ---------LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                     L   +LVSW VMI  Y     P + + L+       + PN           
Sbjct: 1370 RDARMIYDELPTIDLVSWTVMIVGYTQARQPNDGLRLFADEIRSDLLPN----------- 1418

Query: 310  GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
               SALL       + +R      +R  NAL+DMYAKC ++++A  +F  +  +DV++W 
Sbjct: 1419 ---SALL-----QVFFQR------VRFLNALIDMYAKCHTISDAYAIFHGVLEKDVITWN 1464

Query: 370  SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
            SMIS Y  +G  YDA+ LF++M    L PD+I  VS LSA +  G ++ G
Sbjct: 1465 SMISGYAQNGSAYDALRLFNQMRSYSLAPDAITLVSTLSASATLGAIQVG 1514



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 248  NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
            +V S + +F ++ N +  +W VMI  Y  N +  + +  Y +M +   E + I  + +L 
Sbjct: 1167 DVRSARMVFDQMPNPDFYAWKVMIRWYFLNDLFVDVIPFYNRMRMSFRECDNIIFSIILK 1226

Query: 308  ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
            AC +L  ++ GRK+H  +  K   P+  +   L+DMY KCG +  +  VF+++  ++VVS
Sbjct: 1227 ACSELREIVEGRKVHCQIV-KVGGPDSFVMTGLIDMYGKCGQVECSSAVFEEIMDKNVVS 1285

Query: 368  WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
            WTSMI+ Y  +    + + LF++M  + +  +     S+++A +    L +G++   +  
Sbjct: 1286 WTSMIAGYVQNNCAEEGLVLFNRMRDALVESNPFTLGSIINAFTKLRALHQGKW---VHG 1342

Query: 428  EQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMP 463
               K +  +  F     +D+  + G+  +A  +  ++P
Sbjct: 1343 YAIKNIAELSSFLATTFLDMYVKCGQTRDARMIYDELP 1380



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 5/146 (3%)

Query: 333  NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
            NL  +  LV +Y   G +  AR VFDQM   D  +W  MI  Y ++    D +  +++M 
Sbjct: 1151 NLLCDTKLVGVYGALGDVRSARMVFDQMPNPDFYAWKVMIRWYFLNDLFVDVIPFYNRMR 1210

Query: 393  MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL-VPRIEHFACLVDLLGRAGK 451
            MS    D+I F  +L ACS    + EGR   K+  +  K+  P       L+D+ G+ G+
Sbjct: 1211 MSFRECDNIIFSIILKACSELREIVEGR---KVHCQIVKVGGPDSFVMTGLIDMYGKCGQ 1267

Query: 452  VEEAYDLIKQMPMEPNERIWGSLVAA 477
            VE +  + +++ M+ N   W S++A 
Sbjct: 1268 VECSSAVFEEI-MDKNVVSWTSMIAG 1292



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 8/187 (4%)

Query: 44   IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
            I+    LHA  +      SN  IG  L+  Y  CG     R VFD +  KN++ ++ +I 
Sbjct: 1511 IQVGSSLHAYSVKGGLFSSNLYIGTALLNFYAKCGDARSARMVFDSMGVKNIITWSAMIG 1570

Query: 104  SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
             Y        +L ++ NM      P+   +  VL ACS S  +  G +   S+++   DY
Sbjct: 1571 GYGVQGDGSGSLSIFSNMLKEDLKPNEVIFTTVLSACSYSGMVEEGGRYFKSMIQ---DY 1627

Query: 164  NLFNGNG----LVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDV 218
            N          +V +  + G L EA   +  MP  +DV  + + + G     RFD    V
Sbjct: 1628 NFVPSMKHYACMVDLLARSGKLDEALDFIKKMPVQRDVSLYGAFLHGCGLYSRFDLGEVV 1687

Query: 219  CREMESL 225
             REM  L
Sbjct: 1688 VREMLQL 1694


>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
          Length = 594

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 173/457 (37%), Positives = 260/457 (56%), Gaps = 37/457 (8%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+R Y ACG++ D R VFD + ++++V + V++  Y     Y +AL ++ +M    
Sbjct: 106 VGTALVRAYAACGRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSR 165

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             PD      VL  C+ + +L  G  IH  ++      +      L+ MY  C  ++ A 
Sbjct: 166 VVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAE 225

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           ++ N +  K++V   +MV GYA+NG+ + A                        S+ N  
Sbjct: 226 KLYNRVSEKEIVLSTTMVYGYAKNGKVEIA-----------------------HSIFNGM 262

Query: 246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
           P               K++VSW+ MIA YA +S P EA++L+  M+  G++P+ I++ SV
Sbjct: 263 PA--------------KDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSV 308

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           + AC ++ AL   R IH +VE   +   L + NAL+DM++KCGSLT A  VF+ M  ++V
Sbjct: 309 ISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNV 368

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           V+WTS+I+A  M G G  A+ LF  M   G+ P+ + F+ +L AC HAGL+EEGR  FKI
Sbjct: 369 VTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKI 428

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M +QY++ P  EH+ C+VDLLGRA  + +A DLI+ M + PN  IWGSL+AAC ++ +++
Sbjct: 429 MVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLE 488

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
           +G  AA  I  L PN  G  VLLSNIYA+ G W DVK
Sbjct: 489 LGTFAAKKILELDPNHGGAQVLLSNIYAEYGNWNDVK 525



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 141/316 (44%), Gaps = 22/316 (6%)

Query: 9   RHFSTTKPVQALVLSTQYTLLSGDACNDILDKYP---DIKTLKKLHAQIIINQHLHSNPS 65
           R+    K + + +L +  TL+       +++ Y    D++  +KL+ ++       S   
Sbjct: 184 RNLRFGKAIHSYMLVSD-TLIDAQVSCALMNMYASCADMEMAEKLYNRV-------SEKE 235

Query: 66  IGLKLMRTYGAC--GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV 123
           I L     YG    G++     +F+ +  K+VV ++ +I  Y  +    +AL+++ +M  
Sbjct: 236 IVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQR 295

Query: 124 HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183
            G  PD  T   V+ AC+   +L     IH  V    +   L  GN L+ M+ KCG L  
Sbjct: 296 SGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTL 355

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           A  V N MP K+VVTW S++   A +G    AL +   M+S  I+P+  T   LL +  +
Sbjct: 356 ALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCH 415

Query: 244 TS--PENVLSVKEMFLKLDNKNLVS-WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                E  L  K M  +   + +   +  M+ +     +  +A DL   M    + PN +
Sbjct: 416 AGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMH---LRPNVV 472

Query: 301 SVASVLPAC---GDLS 313
              S+L AC   GDL 
Sbjct: 473 IWGSLLAACRMHGDLE 488


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 172/486 (35%), Positives = 262/486 (53%), Gaps = 48/486 (9%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           V  +I N N+  +N LIR    +    ++ H Y      G  PD  T+P ++KAC+   +
Sbjct: 73  VASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLEN 132

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
             +G+Q H   +K G + + +  N LV MY   G +  AR V   M   DVV+W  M+AG
Sbjct: 133 APMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAG 192

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           Y + G                   DA                   S +E+F ++  +NLV
Sbjct: 193 YHRCG-------------------DAK------------------SARELFDRMPERNLV 215

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           +W+ MI+ YA N+   +AV+ +  ++  G+  N   +  V+ +C  L AL +G K H YV
Sbjct: 216 TWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYV 275

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
            R KL  NL L  A+VDMYA+CG++ +A  VF+Q+  +DV+ WT++I+   M G    A+
Sbjct: 276 MRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKAL 335

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
             FS+M   G  P  I F +VL+ACSHAG++E G   F+ M   + + PR+EH+ C+VDL
Sbjct: 336 WYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDL 395

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           LGRAGK+ +A   + +MP++PN  IW +L+ AC ++ N+++G      +  + P  SG+Y
Sbjct: 396 LGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHY 455

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRSSKCLTTGP 564
           VLLSNIYA+A +W DV  +R+ M  KG++K PG S +E++ +V             T G 
Sbjct: 456 VLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHE----------FTIGD 505

Query: 565 KNVPPI 570
           K  P I
Sbjct: 506 KTHPEI 511



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 136/292 (46%), Gaps = 12/292 (4%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y  CG     R +FD +  +N+V ++ +I  Y  N  +  A+  ++ +   G   +    
Sbjct: 193 YHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVM 252

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             V+ +C+   +L +G + H  V++  L  NL  G  +V MY +CG +++A  V   +P 
Sbjct: 253 VGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPE 312

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS-PENVLSV 252
           KDV+ W +++AG A +G  ++AL    EM      P   T  ++L + ++    E  L +
Sbjct: 313 KDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEI 372

Query: 253 KEMFLKLDN---KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            E  +K D+     L  +  M+ +        +A    L+M V   +PNA    ++L AC
Sbjct: 373 FES-MKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPV---KPNAPIWRALLGAC 428

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALV-DMYAKCGSLTEARTVFDQM 360
                + +G ++ + +   ++QP       L+ ++YA+     +  TV  QM
Sbjct: 429 RIHKNVEVGERVGKIL--LEMQPEYSGHYVLLSNIYARANKWKDV-TVMRQM 477



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +K H  ++ N+ L  N  +G  ++  Y  CG +     VF+++  K+V+ +  LI     
Sbjct: 269 EKAHEYVMRNK-LSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAM 327

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYNLF 166
           +     AL  +  M+  GF P   T+  VL ACS +  +  GL+I  S+ +  G++  L 
Sbjct: 328 HGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLE 387

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAG 205
           +   +V + G+ G L++A + +  MP K +   W +++  
Sbjct: 388 HYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGA 427


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 201/610 (32%), Positives = 325/610 (53%), Gaps = 73/610 (11%)

Query: 7   LCRHFSTTKPVQALVL-------STQYTLLS-GDACNDILDKYPDIKTLKKLHAQIIINQ 58
           LCR       ++A  L        + +TL+S   AC++ L K   +   K++H       
Sbjct: 88  LCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSN-LRKRDGLWLGKQIHGCCFRKG 146

Query: 59  HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVY 118
           H  +  +  L  M  Y   G++ D + +     ++++V +N +I S+  N  + +AL   
Sbjct: 147 HWRTFSNNAL--MAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFL 204

Query: 119 KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGK 177
           + M + G  PD  T+  VL ACS  + L  G +IH   ++   +  N F G+ LV MY  
Sbjct: 205 RLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCN 264

Query: 178 CGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR-IKPDADTMAS 236
           CG ++  R V + +  + +  WN+M+AGYAQ+   ++AL +  EME+   +  +A TM+S
Sbjct: 265 CGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSS 324

Query: 237 LLPSV----------------------TNTSPENVL-----------SVKEMFLKLDNKN 263
           ++P+                       TN   +N L           + K +F  +++++
Sbjct: 325 IVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRD 384

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE------------------PNAISVASV 305
           +VSWN +I  Y      ++A  L L  E+  IE                  PN+I++ +V
Sbjct: 385 IVSWNTIITSYVICGRSSDA--LLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTV 442

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           LP C  LSAL  G++IH Y  R  L   + + +ALVDMYAKCG L  AR VFDQM  ++V
Sbjct: 443 LPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNV 502

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSG-----LCPDSIAFVSVLSACSHAGLLEEGR 420
           ++W  +I AYGM G+G +++ LF  M+  G     + P  + F+++ ++CSH+G+++EG 
Sbjct: 503 ITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGL 562

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE-RIWGSLVAACC 479
             F  M  ++ + P  +H+AC+VDL+GRAGKVEEAY L+  MP   ++   W SL+ AC 
Sbjct: 563 SLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACR 622

Query: 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA 539
           +Y N++IG +AA+++  L P+ + +YVLLSNIY+ AG W     +R+ M + G+KK PG 
Sbjct: 623 IYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGC 682

Query: 540 S-VEMNDQVQ 548
           S +E  D+V 
Sbjct: 683 SWIEYGDEVH 692



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 140/485 (28%), Positives = 235/485 (48%), Gaps = 58/485 (11%)

Query: 48  KKLHAQII-INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           K++HA +        S+ +I   L+  YG CG + D   VFD IT ++ V +N +I +  
Sbjct: 30  KQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALC 89

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG---SNSLLVGLQIHCSVVKVGLDY 163
               +  A+  ++ M + GF+P  +T   +  ACS     + L +G QIH    + G  +
Sbjct: 90  RFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKG-HW 148

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
             F+ N L+AMY K G L +A+ +L     +D+VTWNSM++ ++QN RF EAL   R M 
Sbjct: 149 RTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMV 208

Query: 224 SLRIKPDADTMASLLPSV------------------TNTSPEN----------------V 249
              +KPD  T AS+LP+                   T+   EN                V
Sbjct: 209 LEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQV 268

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME-VHGIEPNAISVASVLPA 308
            S + +F  + ++ +  WN MIA YA +    +A+ L+++ME   G+  NA +++S++PA
Sbjct: 269 ESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPA 328

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
                 +     IH YV ++ L+ N  L+NAL+DMY++ G +  ++ +FD M  +D+VSW
Sbjct: 329 YVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSW 388

Query: 369 TSMISAYGMSGQGYDAVALFSKML----------------MSGLCPDSIAFVSVLSACSH 412
            ++I++Y + G+  DA+ L  +M                      P+SI  ++VL  C+ 
Sbjct: 389 NTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCAS 448

Query: 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG 472
              L +G+           L  ++   + LVD+  + G +  A  +  QMP+  N   W 
Sbjct: 449 LSALAKGKEIHAYAIRNL-LASQVTVGSALVDMYAKCGCLNLARRVFDQMPIR-NVITWN 506

Query: 473 SLVAA 477
            ++ A
Sbjct: 507 VIIMA 511



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 159/326 (48%), Gaps = 43/326 (13%)

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG----NGLVAMYGKCGC 180
           GF PD + +P VLKA +G   L +G QIH  V K G  Y  F+     N LV MYGKCG 
Sbjct: 5   GFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFG--YGSFSSVTIDNTLVNMYGKCGG 62

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           L +A +V + +  +D V+WNS+++   +   ++ A+   R M     +P + T+ S+  +
Sbjct: 63  LGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALA 122

Query: 241 VTN------------------------TSPENVL-----------SVKEMFLKLDNKNLV 265
            +N                        T   N L             K + +  ++++LV
Sbjct: 123 CSNLRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLV 182

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           +WN MI+ ++ N    EA+     M + G++P+ ++ ASVLPAC  L  L  G++IH Y 
Sbjct: 183 TWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYA 242

Query: 326 ER-KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
            R   +  N  + +ALVDMY  CG +   R VFD +  + +  W +MI+ Y  S     A
Sbjct: 243 LRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKA 302

Query: 385 VALFSKM-LMSGLCPDSIAFVSVLSA 409
           + LF +M   +GL  ++    S++ A
Sbjct: 303 LMLFIEMEAAAGLYSNATTMSSIVPA 328



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 2/121 (1%)

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP--NLRLENALVDMYAKCGSLT 351
           G  P+  +  +VL A   +  L LG++IH +V +       ++ ++N LV+MY KCG L 
Sbjct: 5   GFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLG 64

Query: 352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
           +A  VFD++  +D VSW S+ISA     +   A+  F  MLM G  P S   VS+  ACS
Sbjct: 65  DAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACS 124

Query: 412 H 412
           +
Sbjct: 125 N 125



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           M+ SG  PD+ AF +VL A +    L  G+  +  +    Y     +     LV++ G+ 
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
           G + +AY +  ++  E ++  W S+++A C +   ++ I A
Sbjct: 61  GGLGDAYKVFDRIT-ERDQVSWNSIISALCRFEEWEVAIKA 100


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 176/535 (32%), Positives = 285/535 (53%), Gaps = 35/535 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++H +++    L +N ++G  L+  Y  CG + D R VFD + +++ V +  L  +Y  
Sbjct: 165 REVHVRVM-EAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAE 223

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +    ++L  Y  M   G  P   TY  VL AC    +L  G QIH  +V+     ++  
Sbjct: 224 SGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRV 283

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L  MY KCG +K+AR V   +P++DV+ WN+M+ G   +G+ +EA  +   M    +
Sbjct: 284 STALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECV 343

Query: 228 KPDADTMASLLPS----------------------VTNTSPENVL-----------SVKE 254
            PD  T  ++L +                      V++    N L             ++
Sbjct: 344 APDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQ 403

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F ++  +++VSW  ++  YA+     E+   + +M   G+E N I+   VL AC +  A
Sbjct: 404 VFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVA 463

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           L  G++IH  V +  +  +L + NAL+ MY KCGS+ +A  V + M  +DVV+W ++I  
Sbjct: 464 LKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGG 523

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
              +G+G +A+  F  M    + P++  FV+V+SAC    L+EEGR  F  M + Y +VP
Sbjct: 524 LAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVP 583

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
             +H+AC+VD+L RAG + EA D+I  MP +P+  +WG+L+AAC  + N++IG  AA+  
Sbjct: 584 TEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQC 643

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
             L P  +G YV LS IYA AG W DV ++RK M  +G+KK PG S +E+  +V 
Sbjct: 644 LKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVH 698



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 162/610 (26%), Positives = 290/610 (47%), Gaps = 88/610 (14%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           K  D+   K++H  I+    +  N  I   L++ Y  CG + + R +FD+ +NK+VV +N
Sbjct: 56  KAKDLAVGKQVHEHIL-RFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWN 114

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
           V+I  Y +  L  +A +++  M   G +PD +T+  +L ACS   +L  G ++H  V++ 
Sbjct: 115 VMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEA 174

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           GL  N   GN L++MY KCG +++ARRV + M S+D V+W ++   YA++G   E+L   
Sbjct: 175 GLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTY 234

Query: 220 REMESLRIKPDADTMASLLPSVTNTSPEN------------------------------- 248
             M    ++P   T  ++L +  + +                                  
Sbjct: 235 HAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKC 294

Query: 249 --VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
             V   +E+F  L N+++++WN MI    ++    EA  ++ +M    + P+ ++  ++L
Sbjct: 295 GAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAIL 354

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
            AC     L  G++IH    +  L  ++R  NAL++MY+K GS+ +AR VFD+M  +DVV
Sbjct: 355 SACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVV 414

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS-----------HAGL 415
           SWT+++  Y   GQ  ++ + F KML  G+  + I ++ VL ACS           HA +
Sbjct: 415 SWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEV 474

Query: 416 LEEGRY------------YFK-------IMTEQYKLVPRIEHFACLVDLLGRAGKVEEA- 455
           ++ G +            YFK       I   +      +  +  L+  L + G+  EA 
Sbjct: 475 VKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEAL 534

Query: 456 --YDLIKQMPMEPNERIWGSLVAACCLYSNMDIG---ILAADHIFHLAPNQSGYYVLLSN 510
             ++++K   M PN   + ++++AC + + ++ G     +    + + P +  +Y  + +
Sbjct: 535 QKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEK-HYACMVD 593

Query: 511 IYAKAGRWGDVKRVRKFMNSKGIKKMPGA---------SVEMNDQVQIIALPLRSSKCLT 561
           I A+AG  G+ + V   M  K    M GA         +VE+ +Q         + +CL 
Sbjct: 594 ILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQA--------AEQCLK 645

Query: 562 TGPKNVPPIV 571
             P+N    V
Sbjct: 646 LEPQNAGTYV 655



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 196/388 (50%), Gaps = 38/388 (9%)

Query: 111 YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG 170
           +Y    V + +   G   D Y Y  +L++C  +  L VG Q+H  +++ G+  N++  N 
Sbjct: 25  WYAPADVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINT 84

Query: 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
           L+ +Y  CG + EARR+ +   +K VV+WN M++GYA  G   EA ++   M+   ++PD
Sbjct: 85  LLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPD 144

Query: 231 ADTMASLL-----PSVTNTSPE----------------------------NVLSVKEMFL 257
             T  S+L     P+  N   E                            +V   + +F 
Sbjct: 145 KFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFD 204

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
            + +++ VSW  +   YA +    E++  Y  M   G+ P+ I+  +VL ACG L+AL  
Sbjct: 205 AMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEK 264

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           G++IH  +   +   ++R+  AL  MY KCG++ +AR VF+ +  +DV++W +MI     
Sbjct: 265 GKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVD 324

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK--LVPR 435
           SGQ  +A  +F +ML   + PD + ++++LSAC+  G L  G+   +I     K  LV  
Sbjct: 325 SGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGK---EIHARAVKDGLVSD 381

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           +     L+++  +AG +++A  +  +MP
Sbjct: 382 VRFGNALINMYSKAGSMKDARQVFDRMP 409



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 98/194 (50%), Gaps = 4/194 (2%)

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMY 344
           D+   +   G + ++     +L +C     L +G+++H ++ R  ++PN+ + N L+ +Y
Sbjct: 30  DVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLY 89

Query: 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404
             CGS+ EAR +FD+   + VVSW  MIS Y   G G +A  LF+ M   GL PD   FV
Sbjct: 90  VHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFV 149

Query: 405 SVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           S+LSACS    L  GR  + ++M  +  L         L+ +  + G V +A  +   M 
Sbjct: 150 SILSACSSPAALNWGREVHVRVM--EAGLANNATVGNALISMYAKCGSVRDARRVFDAMA 207

Query: 464 MEPNERIWGSLVAA 477
              +E  W +L  A
Sbjct: 208 SR-DEVSWTTLTGA 220


>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
          Length = 632

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 171/469 (36%), Positives = 263/469 (56%), Gaps = 39/469 (8%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV-H 124
           +G  L+  Y     + D   VFDE+  ++VV +  L+  Y    L  +A  ++  M V  
Sbjct: 180 VGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVG 239

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G  P+  T    + A      L  G+ +H  V + G+  ++   N LV M+GKCGC++ A
Sbjct: 240 GMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYA 299

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           R V + M  KDV +W SMV  YA+          C ++ES                    
Sbjct: 300 REVFDGMEVKDVYSWTSMVNAYAK----------CGDLES-------------------- 329

Query: 245 SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
                   +++F  +  +N+VSW+ MIA Y+  + P EAV L+ +M   G++P   ++ S
Sbjct: 330 -------AEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVS 382

Query: 305 VLPACGDLSALLLGRKIHR-YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           VL AC  L  L LGR I+  Y+   K+   + L NAL+DM+AKCG + EA  +FD+M  +
Sbjct: 383 VLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAER 442

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           +VVSW +MI A+ + GQ  +A+ LF ++    + PD I F+ +L++CSH+GL+ EGR YF
Sbjct: 443 NVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYF 502

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
           K M   Y++ PR+EH+AC++DLLG+ G +EEA+++ + MPME +E  WG+L+ AC ++ N
Sbjct: 503 KEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGN 562

Query: 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532
           ++IG   AD +  L P+ SG YVL+S IYA   +W  VK +R  M  +G
Sbjct: 563 VEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRG 611



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 89/196 (45%), Gaps = 16/196 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           + ++   I++  +    ++G  L+  +  CG + +   +FDE+  +NVV +N +I ++  
Sbjct: 397 RWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAV 456

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV-VKVGLDYNLF 166
           +    +A+ +++ +      PD  T+  +L +CS S  +  G +    + +   ++  + 
Sbjct: 457 HGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVE 516

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           +   ++ + GK G L+EA  V   MP   D   W ++             L+ CR   ++
Sbjct: 517 HYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGAL-------------LNACRMHGNV 563

Query: 226 RIKP-DADTMASLLPS 240
            I    AD +  L PS
Sbjct: 564 EIGACVADKLVELDPS 579


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 167/504 (33%), Positives = 274/504 (54%), Gaps = 33/504 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G + + R VFD I  +NVV +  ++   + N    + L ++  M      P 
Sbjct: 163 LVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMREERVLPS 222

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            YT   VL AC+   SL  G  +H SV+K G+ +N F    ++ MY KCG +++ARR+ +
Sbjct: 223 EYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRLFD 282

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
           ++   D+V W +M+ GY QNG   +AL +  + + + I P++ T+A++L +         
Sbjct: 283 ELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSL 342

Query: 241 -------------VTNTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYAN 276
                        + N    N L               +F ++ NK++V+WN +IA Y  
Sbjct: 343 GRLIHAMSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVE 402

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N M  EA+ L+ QM V G  P+AIS+ + L AC  L  LL+G+  H Y  ++    N+ +
Sbjct: 403 NDMGNEALMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFLSNVYV 462

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
             AL+++Y KC  L  A+ VF +M  ++ V+W +MI  YGM G    ++ L +KML   +
Sbjct: 463 NTALLNLYNKCADLPSAQRVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDLLNKMLKDNI 522

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P+ + F S+LS CSH G++  G+  F  M + + + P ++H+AC+VD+L RAG +EEA 
Sbjct: 523 QPNEVVFTSILSTCSHTGMVSVGKMCFDSMAQYFNITPSMKHYACMVDVLARAGNLEEAL 582

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           + I++MPM  +  IWG+ +  C L+S ++ G  A + +  L P++  +YVL+SN+Y   G
Sbjct: 583 EFIQKMPMPADISIWGAFLHGCKLHSRLEFGEEAINRMMVLHPDKPDFYVLMSNLYTSYG 642

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS 540
           RW     +R+ M  +G+ K+PG S
Sbjct: 643 RWDKSLAIRRLMQERGLVKLPGCS 666



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 159/586 (27%), Positives = 271/586 (46%), Gaps = 82/586 (13%)

Query: 23  STQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD 82
           S ++    G   + +L     + +L+ LHA+++ +  L +  +   KL+  Y A G +  
Sbjct: 15  SVEHLPHGGALLHRLLPACATLPSLRALHARLLAHGLLRALRA-RTKLLSCYAALGDLAS 73

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP--DCYTYPCVLKAC 140
            R V DE    +   + V +  +     + DAL +++ M     +   D       LKA 
Sbjct: 74  ARRVLDETPRPDPYTYRVALGWHAAAGRHADALALHRGMRRRCPEAHDDVVLLSLALKAS 133

Query: 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWN 200
             S     G ++HC+ VK G   + F  N LV MY K G L+ AR+V + +  ++VV+W 
Sbjct: 134 VRSADFRYGRRLHCNAVKAG-GADGFVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWT 192

Query: 201 SMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL---------------------- 238
           SM++G  QNG  +E L +  EM   R+ P   TMAS+L                      
Sbjct: 193 SMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKH 252

Query: 239 -----PSVTNTSPE------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
                P +T    +       V   + +F +L   +LV W  MI  Y  N  P +A+ L+
Sbjct: 253 GMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLF 312

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
              +   I PN++++A+VL A   L  L LGR IH    +  +  N  + NALVDMYAKC
Sbjct: 313 SDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKLLVIENDVVMNALVDMYAKC 372

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
            +L+EA  +F ++  +DVV+W S+I+ Y  +  G +A+ LFS+M + G  PD+I+ V+ L
Sbjct: 373 KALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQGSSPDAISIVNAL 432

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKL------------------VPRIEH----------- 438
           SAC   G L  G+ +     ++  L                  +P  +            
Sbjct: 433 SACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNLYNKCADLPSAQRVFSEMSERNSV 492

Query: 439 -FACLVDLLGRAGKVEEAYDLIKQM---PMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
            +  ++   G  G    + DL+ +M    ++PNE ++ S+++ C     + +G +  D +
Sbjct: 493 TWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILSTCSHTGMVSVGKMCFDSM 552

Query: 495 ---FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
              F++ P+   +Y  + ++ A+A   G+++   +F     I+KMP
Sbjct: 553 AQYFNITPSMK-HYACMVDVLARA---GNLEEALEF-----IQKMP 589



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 158/353 (44%), Gaps = 35/353 (9%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           +I   +  NP I   ++  Y  CG++ D R +FDE+   ++V +  +I  Y  N    DA
Sbjct: 249 VIKHGMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDA 308

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
           L ++ +       P+  T   VL A +   +L +G  IH   VK+ +  N    N LV M
Sbjct: 309 LLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKLLVIENDVVMNALVDM 368

Query: 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
           Y KC  L EA  +   + +KDVVTWNS++AGY +N   +EAL +  +M      PDA ++
Sbjct: 369 YAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQGSSPDAISI 428

Query: 235 ASLLPSV--------------------------TNTSPENVL-------SVKEMFLKLDN 261
            + L +                            NT+  N+        S + +F ++  
Sbjct: 429 VNALSACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNLYNKCADLPSAQRVFSEMSE 488

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK- 320
           +N V+W  MI  Y      A ++DL  +M    I+PN +   S+L  C     + +G+  
Sbjct: 489 RNSVTWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILSTCSHTGMVSVGKMC 548

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-QDVVSWTSMI 372
                +   + P+++    +VD+ A+ G+L EA     +M    D+  W + +
Sbjct: 549 FDSMAQYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMPADISIWGAFL 601


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 172/525 (32%), Positives = 281/525 (53%), Gaps = 34/525 (6%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y   G++ +   VF E+  +NVV +  +I   V      +AL  + +M +  
Sbjct: 105 VGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQK 164

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
              D YT+   LKAC+ S +L  G +IHC  +K G     F  N L  MY KCG L    
Sbjct: 165 VGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGL 224

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS----- 240
           R+   M  +DVV+W +++    Q G+ + A+   R M    + P+  T A+++       
Sbjct: 225 RLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLG 284

Query: 241 -----------VTNTSPENVLSV-----------------KEMFLKLDNKNLVSWNVMIA 272
                      V      + LSV                   +F  L  ++++SW+ MI+
Sbjct: 285 RIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMIS 344

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            YA      EA D    M   G  PN  + ASVL  CG+++ L  G+++H +V    L+ 
Sbjct: 345 GYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQ 404

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           N  +++AL++MY+KCGS+ EA  +FD+    ++VSWT+MI+ Y   G   +A+ LF K+ 
Sbjct: 405 NTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLP 464

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
             GL PDS+ F++VL+ACSHAGL++ G +YF  +++ +++ P  +H+ C++DLL RAG++
Sbjct: 465 KVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRL 524

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
            +A  +I+ MP + ++ +W +L+ AC ++ ++D G  AA+ I  L PN +  ++ L+N+Y
Sbjct: 525 NDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHITLANMY 584

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           A  G+W +   VRK M SKG+ K PG S ++  D+V       RS
Sbjct: 585 AAKGKWKEAAEVRKMMKSKGVVKEPGWSWIKFKDRVSAFVSGDRS 629



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/521 (24%), Positives = 233/521 (44%), Gaps = 71/521 (13%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCV 136
           G + + R +FD++  ++ + +  +I  YVN     +AL ++  M V  G   D +     
Sbjct: 15  GHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILSLA 74

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDV 196
           LKAC  + S+  G  +H   VK     ++F G+ LV MY K G + E   V  +MP ++V
Sbjct: 75  LKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNV 134

Query: 197 VTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP---------- 246
           V+W +++AG  + G   EAL    +M   ++  D  T +S L +  ++            
Sbjct: 135 VSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQ 194

Query: 247 ------------ENVLSVK-----------EMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
                        N L+              +F  +  +++VSW  +I           A
Sbjct: 195 TLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENA 254

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
           V  + +M    + PN  + A+V+  C  L  +  G ++H +V R+ L  +L + N+++ M
Sbjct: 255 VKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAM 314

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
           Y+KC  L  A TVF  +  +D++SW++MIS Y   G G +A    S M   G  P+  AF
Sbjct: 315 YSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAF 374

Query: 404 VSVLSACSHAGLLEEGR-----------------------YYFKI--MTEQYKLVPRIEH 438
            SVLS C +  +LE+G+                        Y K   + E  K+    E+
Sbjct: 375 ASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEY 434

Query: 439 -----FACLVDLLGRAGKVEEAYDLIKQMP---MEPNERIWGSLVAACCLYSNMDIGIL- 489
                +  +++     G  +EA DL K++P   + P+   + +++AAC     +D+G   
Sbjct: 435 NNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHY 494

Query: 490 --AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
             +   +  + P++  Y  ++ ++  +AGR  D + + + M
Sbjct: 495 FNSLSKVHQICPSKDHYGCMI-DLLCRAGRLNDAESMIQSM 534



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 107/200 (53%), Gaps = 1/200 (0%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           I+  ++LHA +I  + L  + S+   +M  Y  C Q+     VF  ++ ++++ ++ +I 
Sbjct: 286 IEWGEQLHAHVI-RRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMIS 344

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            Y       +A      M   G  P+ + +  VL  C     L  G Q+H  V+ VGL+ 
Sbjct: 345 GYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQ 404

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           N    + L+ MY KCG +KEA ++ ++    ++V+W +M+ GYA++G   EA+D+ +++ 
Sbjct: 405 NTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLP 464

Query: 224 SLRIKPDADTMASLLPSVTN 243
            + ++PD+ T  ++L + ++
Sbjct: 465 KVGLRPDSVTFIAVLAACSH 484



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 3/168 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LHA ++    L  N  +   L+  Y  CG + +   +FDE    N+V +  +I  Y  
Sbjct: 391 KQLHAHVLC-VGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAE 449

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +    +A+ ++K +   G  PD  T+  VL ACS +  + +G     S+ KV       +
Sbjct: 450 HGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKD 509

Query: 168 GNG-LVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFD 213
             G ++ +  + G L +A  ++  MP  +D V W++++     +G  D
Sbjct: 510 HYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVD 557



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 18/153 (11%)

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
           + NL L+N +     K G L  AR +FD+M  +D +SWT++IS Y       +A++LFSK
Sbjct: 3   EINLVLKNLV-----KTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSK 57

Query: 391 MLMS-GLCPDSIAFVSVLSACSHAGL-----LEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           M +  GL  D       L AC   GL       E  + + + T+    V  +   + LVD
Sbjct: 58  MWVEPGLHMDPFILSLALKAC---GLNMSVSFGESLHGYSVKTD---FVNSVFVGSALVD 111

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           +  + GKV+E   + K+MP+  N   W +++A 
Sbjct: 112 MYMKIGKVDEGCIVFKEMPLR-NVVSWTAIIAG 143


>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
 gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
          Length = 562

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 185/557 (33%), Positives = 290/557 (52%), Gaps = 48/557 (8%)

Query: 26  YTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSN-PSIGLKLMRTYGACGQMVDTR 84
           YT++S       L+K   +K LK++H+ +I    + +  P   L         G +   R
Sbjct: 6   YTVMS------FLEKCKTMKELKQIHSLMITTSVVKNIIPCSRLIDFCANSELGDIEYAR 59

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
            VFD+I  + V  +N +I+ Y N    + AL +Y+ M   GF PD +T+P VLK CS  +
Sbjct: 60  TVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIID 119

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
            L+ G  +H  +VK G + +++  + L+ MY  CG L    +V   +P  +VV W S++A
Sbjct: 120 LLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIA 179

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDA-----------------------DTMASLL--P 239
           G+  N +  EAL + ++ME+  ++P+                        D +  L   P
Sbjct: 180 GFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFDP 239

Query: 240 SVTNTSPENVL---------------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAV 284
             TN+    +L               + + +F K+  +NLV WN MI+ Y+     AEA+
Sbjct: 240 FDTNSCFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEAL 299

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMY 344
            L++ ME+ G  PN  +  SV+ AC  +     GR +H    R      + +  AL+DMY
Sbjct: 300 RLFVDMEMAGFVPNKATFLSVISACTHMGFRSTGRSLHARALRASFHEFVAIGTALMDMY 359

Query: 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG-LCPDSIAF 403
           AK G    A  +F ++R +DV++WT+MIS   + G+G +A+ +F +M     + PD I +
Sbjct: 360 AKAGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITY 419

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           ++VL ACSH GL+EEG+  F  MTE Y + P +EH+ C++DLL RAG  +EA +L+ +MP
Sbjct: 420 IAVLWACSHLGLVEEGQKQFTSMTEVYGIEPTMEHYGCMIDLLSRAGHSKEAEELLMKMP 479

Query: 464 MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKR 523
            +PN  I  S++  C +Y N+ +      HI  L  + SG YVLLSNI+AKA  W ++K 
Sbjct: 480 TQPNATILSSILNGCEMYGNVGLANRVKSHIVELENSSSGVYVLLSNIHAKACNWQEMKL 539

Query: 524 VRKFMNSKGIKKMPGAS 540
            R  +  K I K  G S
Sbjct: 540 ARDMLKHKNIGKTLGNS 556


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 171/450 (38%), Positives = 259/450 (57%), Gaps = 40/450 (8%)

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D +TY  ++KA S +    V   +H  VVK+G   + F GN L+  Y K G   +AR+V 
Sbjct: 5   DSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVF 63

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA--SLLPSVTNTS- 245
           ++MP +DVV+WN+ +A   + G       +  EM      P+ DT++  ++L   T    
Sbjct: 64  DEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM------PEKDTVSWNTILDGYTKAGE 117

Query: 246 -----------PE-NVLSVKEM----------------FLKLDNKNLVSWNVMIAVYANN 277
                      PE NV+S   M                F K+ +KNLV+W +M++  A  
Sbjct: 118 VEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQK 177

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
            +  EA  L+ QM+   +E +  +V S+L AC +  +L LG++IHRYV ++ L  +  + 
Sbjct: 178 GLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVC 237

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
           NAL+DM+ KCG +  A  VFD    Q D VSW S+I  + M G G  A+ LF++M   G 
Sbjct: 238 NALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGF 297

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PD++  ++VLSAC+H G ++EGR +F  M   Y ++P+IEH+ C++DLLGR G ++EA 
Sbjct: 298 NPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAV 357

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           DLIK MP EPNE IWGSL++AC L+ N++   +A + +  L P+ +G Y +LSNIYA+AG
Sbjct: 358 DLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAG 417

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMND 545
           +W D+ + R  M   G +K  G+S VE+N+
Sbjct: 418 QWSDMAKARMQMKGTGSQKTAGSSWVELNE 447



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 155/343 (45%), Gaps = 34/343 (9%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRT-YGACGQMVDTRHVFDEITNK 93
           N ILD Y       ++ A   + Q +     +    M + Y   G +   R +FD++ +K
Sbjct: 106 NTILDGYT---KAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSK 162

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           N+V + +++ +     L  +A  ++  M     + D      +L AC+ S SL +G +IH
Sbjct: 163 NLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIH 222

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN-DMPSKDVVTWNSMVAGYAQNGRF 212
             V K  L  +    N L+ M+ KCGC+  A  V + +   KD V+WNS++ G+A +G  
Sbjct: 223 RYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHG 282

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLVSW 267
           D+AL++  +M+     PDA TM ++L + T+     V   +  F  ++        +  +
Sbjct: 283 DKALELFAQMKQQGFNPDAVTMINVLSACTHMG--FVDEGRRHFSNMERDYGIMPQIEHY 340

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
             MI +     +  EAVDL   M     EPN +   S+L AC          ++H+ VE 
Sbjct: 341 GCMIDLLGRGGLIKEAVDLIKSMP---WEPNEVIWGSLLSAC----------RLHKNVEY 387

Query: 328 --------KKLQP-NLRLENALVDMYAKCGSLTEARTVFDQMR 361
                    KLQP N      L ++YA+ G  ++      QM+
Sbjct: 388 AEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMK 430



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 155/345 (44%), Gaps = 44/345 (12%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y   G   D R VFDE+  ++VV +N  + + V          ++  M    
Sbjct: 42  VGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMP--- 98

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            + D  ++  +L   + +  +    ++   +     + N+ + + +V+ Y K G L+ AR
Sbjct: 99  -EKDTVSWNTILDGYTKAGEVEAAFELFQRMP----ERNVVSWSTMVSGYCKKGDLEMAR 153

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT- 244
            + + MPSK++VTW  MV+  AQ G  DEA  +  +M+   ++ D   + S+L +   + 
Sbjct: 154 VIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESG 213

Query: 245 -------------------SPENVLSVKEMFLKLD--------------NKNLVSWNVMI 271
                              S     ++ +MF K                 K+ VSWN +I
Sbjct: 214 SLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSII 273

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KL 330
             +A +    +A++L+ QM+  G  P+A+++ +VL AC  +  +  GR+    +ER   +
Sbjct: 274 GGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGI 333

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
            P +     ++D+  + G + EA  +   M  + + V W S++SA
Sbjct: 334 MPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSA 378


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 188/537 (35%), Positives = 292/537 (54%), Gaps = 37/537 (6%)

Query: 46  TLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           T   +HA +    H  ++  +G  L+  Y  CG +   R VFD I  K++V +  ++  Y
Sbjct: 122 TCLSVHAYVYKLGH-QADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACY 180

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
             NY + D+L ++  M + G+ P+ +T    LK+C+G  +  VG  +H   +KV  D +L
Sbjct: 181 AENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDL 240

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV-CREMES 224
           + G  L+ +Y K G + EA++   +MP  D++ W+ M++ YAQ+ +  EAL++ CR  +S
Sbjct: 241 YVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQS 300

Query: 225 LRIKPDADTMASLLPSV----------------------TNTSPENVL------------ 250
             + P+  T AS+L +                       +N    N L            
Sbjct: 301 SVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIEN 360

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
           SVK +F     KN V+WN +I  Y       +A++L+  M    I+P  ++ +SVL A  
Sbjct: 361 SVK-LFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASA 419

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
            L AL  GR+IH    +     +  + N+L+DMYAKCG + +AR  FD+M  QD VSW +
Sbjct: 420 SLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNA 479

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           +I  Y + G G +A+ LF  M  S   P+ + FV VLSACS+AGLL++GR +FK M + Y
Sbjct: 480 LICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDY 539

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            + P IEH+ C+V LLGR+G+ +EA  LI ++P +P+  +W +L+ AC ++ N+D+G + 
Sbjct: 540 GIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVC 599

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQV 547
           A  +  + P     +VLLSN+YA A RW +V  VRK M  K +KK PG S   N  V
Sbjct: 600 AQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGV 656



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 122/459 (26%), Positives = 214/459 (46%), Gaps = 47/459 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+ TY   G + D   +FDE+   N V F  L + +  ++ +  A  +   +   G++ +
Sbjct: 44  LLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVN 103

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            + +  +LK     +     L +H  V K+G   + F G  L+  Y  CG +  AR+V +
Sbjct: 104 QFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFD 163

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN------ 243
            +  KD+V+W  MVA YA+N   +++L +  +M  +  +P+  T+++ L S         
Sbjct: 164 GIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKV 223

Query: 244 ---------------------------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                      T    +   ++ F ++   +L+ W++MI+ YA 
Sbjct: 224 GKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQ 283

Query: 277 NSMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
           +    EA++L+ +M     + PN  + ASVL AC  L  L LG +IH  V +  L  N+ 
Sbjct: 284 SDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVF 343

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           + NAL+D+YAKCG +  +  +F     ++ V+W ++I  Y   G G  A+ LFS ML   
Sbjct: 344 VSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLD 403

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYY----FKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
           + P  + + SVL A +    LE GR       K M  +  +V        L+D+  + G+
Sbjct: 404 IQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVAN-----SLIDMYAKCGR 458

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
           +++A     +M  + +E  W +L+   C YS   +G+ A
Sbjct: 459 IDDARLTFDKMDKQ-DEVSWNALI---CGYSIHGLGMEA 493



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 186/402 (46%), Gaps = 50/402 (12%)

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D ++Y  +L+    +     G  +HC ++K G   +LF  N L+  Y   G L++A ++ 
Sbjct: 2   DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRF-----------------------------------D 213
           ++MP  + V++ ++  G++++ +F                                   D
Sbjct: 62  DEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLAD 121

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273
             L V   +  L  + DA    +L+ + +     NV + +++F  +  K++VSW  M+A 
Sbjct: 122 TCLSVHAYVYKLGHQADAFVGTALIDAYSVCG--NVDAARQVFDGIYFKDMVSWTGMVAC 179

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           YA N    +++ L+ QM + G  PN  ++++ L +C  L A  +G+ +H    +     +
Sbjct: 180 YAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRD 239

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
           L +  AL+++Y K G + EA+  F++M   D++ W+ MIS Y  S +  +A+ LF +M  
Sbjct: 240 LYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQ 299

Query: 394 SG-LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
           S  + P++  F SVL AC+   LL  G      +  +  L   +     L+D+  + G++
Sbjct: 300 SSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVL-KVGLDSNVFVSNALMDVYAKCGEI 358

Query: 453 EEAYDLIKQMPMEPNERIWGSLVA----------ACCLYSNM 484
           E +  L      E NE  W +++           A  L+SNM
Sbjct: 359 ENSVKLFTG-STEKNEVAWNTIIVGYVQLGDGEKALNLFSNM 399


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 163/462 (35%), Positives = 256/462 (55%), Gaps = 35/462 (7%)

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
           V GF+P+ YT+  +LK C+    L  G  IH  V+K G++ +    N LV +Y KCG   
Sbjct: 184 VEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSAN 243

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
            A +V  ++P +DVV+W +++ G+   G +   L +  +M +    P+  T  S+L S +
Sbjct: 244 YACKVFGEIPERDVVSWTALITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFISILRSCS 302

Query: 243 NTSP------------ENVLS---------------------VKEMFLKLDNKNLVSWNV 269
           + S             +N L                       + +F +L  ++L +W V
Sbjct: 303 SLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTV 362

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           ++A YA +    +AV  ++QM+  G++PN  ++AS L  C  ++ L  GR++H    +  
Sbjct: 363 IVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAG 422

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
              ++ + +ALVDMYAKCG + +A  VFD +  +D VSW ++I  Y   GQG  A+  F 
Sbjct: 423 QSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFE 482

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
            ML  G  PD + F+ VLSACSH GL+EEG+ +F  +++ Y + P IEH+AC+VD+LGRA
Sbjct: 483 AMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRA 542

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           GK  E    I++M +  N  IW +++ AC ++ N++ G  AA  +F L P     Y+LLS
Sbjct: 543 GKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLS 602

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           N++A  G W DV  VR  M+++G+KK PG S VE+N QV + 
Sbjct: 603 NMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVF 644



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 172/372 (46%), Gaps = 37/372 (9%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   K +H Q+I    ++ +  +   L+  Y  CG       VF EI  ++VV +  LI
Sbjct: 206 DLNEGKAIHGQVI-KSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALI 264

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             +V    Y   L ++  M   GF+P+ YT+  +L++CS  + + +G Q+H  +VK  LD
Sbjct: 265 TGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLD 323

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            N F G  LV MY K   L++A  + N +  +D+  W  +VAGYAQ+G+ ++A+    +M
Sbjct: 324 GNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQM 383

Query: 223 ESLRIKPDADTMASLLPSVTNTSPEN---------------------------------V 249
           +   +KP+  T+AS L   +  +  +                                 V
Sbjct: 384 QREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCV 443

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
              + +F  L +++ VSWN +I  Y+ +    +A+  +  M   G  P+ ++   VL AC
Sbjct: 444 EDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSAC 503

Query: 310 GDLSALLLGRKIHRYVER-KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR-CQDVVS 367
             +  +  G+K    + +   + P +     +VD+  + G   E  +  ++M+   +V+ 
Sbjct: 504 SHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLI 563

Query: 368 WTSMISAYGMSG 379
           W +++ A  M G
Sbjct: 564 WETVLGACKMHG 575



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 106/451 (23%), Positives = 195/451 (43%), Gaps = 54/451 (11%)

Query: 47  LKKLHAQIIIN-----QHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           LKK+  ++I N      HL S+      L+  Y  C  +   R V +E+  ++V  +N  
Sbjct: 8   LKKIIFRVIKNGICPDSHLWSS------LVNVYVKCESLQCARQVLEEMPIQDVQQWNQK 61

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           + S  + Y   +A+ ++  M       + + +  ++ A +       G  IH  V K G 
Sbjct: 62  LSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGF 121

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY--------------- 206
           + ++   N  V MY K   ++   +    M  +++ + N++++G+               
Sbjct: 122 ESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQ 181

Query: 207 --------------------AQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP 246
                               A  G  +E   +  ++    I PD+    SL+        
Sbjct: 182 LLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGS 241

Query: 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
            N     ++F ++  +++VSW  +I  +         + ++ QM   G  PN  +  S+L
Sbjct: 242 ANYAC--KVFGEIPERDVVSWTALITGFVAEGY-GSGLRIFNQMLAEGFNPNMYTFISIL 298

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
            +C  LS + LG+++H  + +  L  N  +  ALVDMYAK   L +A T+F+++  +D+ 
Sbjct: 299 RSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLF 358

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           +WT +++ Y   GQG  AV  F +M   G+ P+     S LS CS    L+ GR   ++ 
Sbjct: 359 AWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGR---QLH 415

Query: 427 TEQYKLVPRIEHF--ACLVDLLGRAGKVEEA 455
           +   K     + F  + LVD+  + G VE+A
Sbjct: 416 SMAIKAGQSGDMFVASALVDMYAKCGCVEDA 446



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 4/174 (2%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  CG + D   VFD + +++ V +N +I  Y  +     AL  ++ M   G  PD
Sbjct: 433 LVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPD 492

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKV-GLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
             T+  VL ACS    +  G +   S+ K+ G+   + +   +V + G+ G   E    +
Sbjct: 493 EVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFI 552

Query: 189 NDMP-SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
            +M  + +V+ W +++     +G  +        M+   ++P+ D+   LL ++
Sbjct: 553 EEMKLTSNVLIWETVLGACKMHGNIEFGERAA--MKLFELEPEIDSNYILLSNM 604



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 86/206 (41%), Gaps = 4/206 (1%)

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           L A  + +KI   V +  + P+  L ++LV++Y KC SL  AR V ++M  QDV  W   
Sbjct: 2   LRAKYILKKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQK 61

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           +S+        +AV LF  M  + +  +   F S++SA +  G    G      +  +Y 
Sbjct: 62  LSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVC-KYG 120

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG--IL 489
               I      V +  +   VE  +   K M +E N     +L++  C     D G  IL
Sbjct: 121 FESDILISNAFVTMYMKTQSVENGWQFFKAMMIE-NLASRNNLLSGFCDTETCDQGPRIL 179

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKA 515
               +    PN   +  +L    +K 
Sbjct: 180 IQLLVEGFEPNMYTFISILKTCASKG 205


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 160/469 (34%), Positives = 263/469 (56%), Gaps = 47/469 (10%)

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           +  ++  M + G  P+ +TYP +LK C+   +  +G QIH  V+K G  +N++  + L+ 
Sbjct: 422 SFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLID 481

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MY K G L  A ++   +   DVV+W +M+AGY Q+ +F EAL++ +EM+   IK D   
Sbjct: 482 MYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIG 541

Query: 234 MASLLPSVT----------------------NTSPENVL--------SVKEMFLKLDN-- 261
            AS + +                        + S  N L         V+E +   D   
Sbjct: 542 FASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIY 601

Query: 262 -KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
            K+ VSWN +++ +A +    EA++++ QM   G+E N+ +  S + A  +++ + +G++
Sbjct: 602 AKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQ 661

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
           IH  + +        + NAL+ +YAKCG++             D +SW SMI+ Y   G 
Sbjct: 662 IHGMIRKTGYDSETEVSNALITLYAKCGTI-------------DDISWNSMITGYSQHGC 708

Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA 440
           G++A+ LF  M    + P+ + FV VLSACSH GL++EG  YF+ M+E + LVP+ EH+A
Sbjct: 709 GFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYA 768

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500
           C+VDLLGR+G +  A   +++MP++P+  +W +L++AC ++ N+DIG  AA H+  L P 
Sbjct: 769 CVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPK 828

Query: 501 QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            S  YVL+SN+YA +G+W    R R+ M  +G+KK PG S VE+++ V 
Sbjct: 829 DSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVH 877



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 133/499 (26%), Positives = 226/499 (45%), Gaps = 66/499 (13%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
            + ++++HA+ I +    S+  I   L+  Y   G +   + VF+ +  ++ V +  +I 
Sbjct: 180 FRFVEQIHAKTITSG-FESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMI- 237

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC--VLKACSGSNSLLVGLQIHCSVVKVGL 161
                            +S +G++ +     C  VL AC+       G Q+H  V+K G 
Sbjct: 238 ---------------SGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGF 282

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
               +  N LV +Y + G L  A ++ + M  +D V++NS+++G AQ G  + AL + ++
Sbjct: 283 SSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKK 342

Query: 222 MESLRIKPDADTMASLLPSVTNT------------------SPENVLSVKEMFLKLDNKN 263
           M     KPD  T+ASLL +  +                   + + V+    + L +   +
Sbjct: 343 MNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSD 402

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR 323
           + + +     Y       ++  ++ QM++ GI PN  +  S+L  C  L A  LG +IH 
Sbjct: 403 IKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHT 462

Query: 324 YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383
            V +   Q N+ + + L+DMYAK G L  A  +F +++  DVVSWT+MI+ Y    +  +
Sbjct: 463 QVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTE 522

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA--- 440
           A+ LF +M   G+  D+I F S +SAC+    L++GR     +  Q  L    +  +   
Sbjct: 523 ALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQ----IHAQSCLSGYSDDLSIGN 578

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500
            LV L  R GKV EAY    Q+  + N   W SLV+                        
Sbjct: 579 ALVSLYARCGKVREAYAAFDQIYAKDNVS-WNSLVSGFA--------------------- 616

Query: 501 QSGYYVLLSNIYAKAGRWG 519
           QSGY+    NI+A+  + G
Sbjct: 617 QSGYFEEALNIFAQMNKAG 635



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 206/433 (47%), Gaps = 41/433 (9%)

Query: 67  GLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF 126
           GLKL+  Y A G +    +VFDE+  +++  +N +  +++   L      +++ M     
Sbjct: 100 GLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNV 159

Query: 127 DPDCYTYPCVLKACSGSN-SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           + D   +  VL+ CSG+  S     QIH   +  G + + F  N L+ +Y K G L  A+
Sbjct: 160 EFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAK 219

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEA--------LDVC---------REMESLRIK 228
           +V  ++ ++D V+W +M++G +QNG  +EA        L  C         +++  L +K
Sbjct: 220 KVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLK 279

Query: 229 PDADTMASLLPSVTN--TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
               +   +  ++    +   N+ S +++F  +  ++ VS+N +I+  A       A+ L
Sbjct: 280 QGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALAL 339

Query: 287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
           + +M +   +P+ ++VAS+L AC  + AL  G++ H Y  +  +  ++ +E +L+D+Y K
Sbjct: 340 FKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVK 399

Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
           C  +  A   F                 YG       +  +F++M + G+ P+   + S+
Sbjct: 400 CSDIKTAHEFF---------------LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSI 444

Query: 407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMPM 464
           L  C+  G  + G    +I T+  K   +   +  + L+D+  + GK++ A  + +++  
Sbjct: 445 LKTCTTLGATDLGE---QIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLK- 500

Query: 465 EPNERIWGSLVAA 477
           E +   W +++A 
Sbjct: 501 ENDVVSWTAMIAG 513



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 166/349 (47%), Gaps = 23/349 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++H Q++       N  +   L+  Y   G++     +F  +   +VV +  +I  Y  
Sbjct: 458 EQIHTQVL-KTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQ 516

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +  + +AL+++K M   G   D   +   + AC+G  +L  G QIH      G   +L  
Sbjct: 517 HDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSI 576

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           GN LV++Y +CG ++EA    + + +KD V+WNS+V+G+AQ+G F+EAL++  +M    +
Sbjct: 577 GNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGL 636

Query: 228 KPDADTMASLLPSVTN--------------------TSPENVLSVKEMFLKLDNKNLVSW 267
           + ++ T  S + +  N                    +  E   ++  ++ K    + +SW
Sbjct: 637 EINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDDISW 696

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV-E 326
           N MI  Y+ +    EA+ L+  M+   + PN ++   VL AC  +  +  G    R + E
Sbjct: 697 NSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSE 756

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
              L P       +VD+  + G L+ A+   ++M  Q D + W +++SA
Sbjct: 757 AHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSA 805


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 166/534 (31%), Positives = 286/534 (53%), Gaps = 35/534 (6%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           +  D +  ++LH  ++  +   ++  +   L+  Y   G + + R VFD +  +NVV + 
Sbjct: 135 RSADFRYGRRLHCDVV--KAGGADGFVMNSLVDMYAKAGDLENARKVFDRVPERNVVSWT 192

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            ++   + N +  + L ++  M      P  YT   VL AC+    L  G  IH SV+K 
Sbjct: 193 SMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKY 252

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           GL  N F    L+ MY KC  +++ARRV +++   D+V W +M+ GY QN R  +AL + 
Sbjct: 253 GLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGYTQNKRPLDALQLF 312

Query: 220 REMESLRIKPDADTMASLLPSVTN------------------TSPENVL----------- 250
              + + I P++ T+A+++ +                     T   +V+           
Sbjct: 313 LHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTMESDVVRNALVDMYAKC 372

Query: 251 ----SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
                   +F ++  K++V+WN M+A Y+ N M  E++ L+ +M + GI P+AISV + L
Sbjct: 373 QALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQGISPDAISVVNAL 432

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
            AC  L+ L +G+  H Y  +     N+ +  AL+++Y+KC  L  A+ VF+ M  ++ V
Sbjct: 433 SACVCLADLHIGKGFHTYAIKYAFMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSV 492

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           +W++MI  YGM G    ++ LF++ML   + P+ + F S+LSACSH G++  G+ YF  M
Sbjct: 493 TWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSACSHTGMVTAGKEYFDSM 552

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
              + + P ++H+AC+VD++ RAG +EEA + I+ MP++    +WGS +  C L+S ++ 
Sbjct: 553 ARHFNITPSMKHYACMVDVMARAGNLEEALEFIQNMPIKAGISVWGSFLHGCKLHSRLEF 612

Query: 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           G  A   +  L P    +YVL+SN+Y   GRW   + +R++M  +G+ K+PG S
Sbjct: 613 GEEAIKKMAALHPETPDFYVLMSNLYTSYGRWDKSQTIRRWMQEQGLVKLPGCS 666



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 149/538 (27%), Positives = 249/538 (46%), Gaps = 78/538 (14%)

Query: 69  KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH---G 125
           KL+  Y A G +   R V D     +   + V++   V+   + DA+ ++++M       
Sbjct: 60  KLLSCYAALGDLASARGVLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPAA 119

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
              D       LKAC  S     G ++HC VVK G   + F  N LV MY K G L+ AR
Sbjct: 120 AQADV-VLSLALKACVRSADFRYGRRLHCDVVKAG-GADGFVMNSLVDMYAKAGDLENAR 177

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV---- 241
           +V + +P ++VV+W SM++G  QNG  +E L +  EM    + P   TM S+L +     
Sbjct: 178 KVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLG 237

Query: 242 ------------------TNT-----------SPENVLSVKEMFLKLDNKNLVSWNVMIA 272
                             TN+             E V   + +F +L+  ++V W  MI 
Sbjct: 238 GLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIV 297

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y  N  P +A+ L+L  +   I PN++++A+V+ A   L  L LGR +H    +     
Sbjct: 298 GYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTME 357

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           +  + NALVDMYAKC +L EA ++F ++  +DVV+W SM++ Y  +G   +++ LF++M 
Sbjct: 358 SDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMR 417

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYY------FKIMTEQYKLVPRIEHFACLVDL- 445
           M G+ PD+I+ V+ LSAC     L  G+ +      +  M+  Y     +  ++   DL 
Sbjct: 418 MQGISPDAISVVNALSACVCLADLHIGKGFHTYAIKYAFMSNIYVNTALLNLYSKCADLP 477

Query: 446 -----------------------LGRAGKVEEAYDLIKQMPME---PNERIWGSLVAACC 479
                                   G  G    + DL  +M  E   PNE ++ S+++AC 
Sbjct: 478 SAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSACS 537

Query: 480 LYSNMDIGILAADHI---FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534
               +  G    D +   F++ P+   +Y  + ++ A+A   G+++   +F+ +  IK
Sbjct: 538 HTGMVTAGKEYFDSMARHFNITPSMK-HYACMVDVMARA---GNLEEALEFIQNMPIK 591



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 18/188 (9%)

Query: 298 NAISVASVLPACGDLSALLLGRKIH--RYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
           +A ++  +LPACG L +L   R +H    +    L   +R    L+  YA  G L  AR 
Sbjct: 20  DASALVLLLPACGTLRSL---RALHGRLLLLTSGLLRGIRARTKLLSCYAALGDLASARG 76

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS----ACS 411
           V D     D  ++  M+     +G   DAVAL   M     CP +     VLS    AC 
Sbjct: 77  VLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRR--CPAAAQADVVLSLALKACV 134

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFA--CLVDLLGRAGKVEEAYDLIKQMPMEPNER 469
            +     GR   ++  +  K     + F    LVD+  +AG +E A  +  ++P E N  
Sbjct: 135 RSADFRYGR---RLHCDVVK-AGGADGFVMNSLVDMYAKAGDLENARKVFDRVP-ERNVV 189

Query: 470 IWGSLVAA 477
            W S+++ 
Sbjct: 190 SWTSMLSG 197


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 188/530 (35%), Positives = 300/530 (56%), Gaps = 39/530 (7%)

Query: 16  PVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG 75
           P   L+LS  +T     +C     K P  + LK+LHA I I      +P    ++++   
Sbjct: 16  PQPPLILSKPFT-----SC-----KTP--RDLKQLHA-IFIKTGQIQDPLTAAEVIKFCA 62

Query: 76  ACGQMVD-TRHVFDEITNKNVVFFNVLIRSYV---NNYLYYDALHVYKNMSVHG-FDPDC 130
              + +D  R VF ++   N   +N ++R      + +L  +AL ++  M   G   P+ 
Sbjct: 63  FSSRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNR 122

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
           +T+P VLKAC+ ++ L  G QIH  +VK G   + F  + LV MY  C  +++A  +   
Sbjct: 123 FTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF-- 180

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL 250
              K+VV ++                    +ME  + K D + +   +         ++ 
Sbjct: 181 --CKNVVDFDGSC-----------------QMELDKRKQDGNVVLWNIMIDGQVRLGDIK 221

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
           S K +F ++  +++VSWNVMI+ YA N    EA++L+ +M+   I+PN +++ SVLPA  
Sbjct: 222 SAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIA 281

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
            + AL LG+ IH Y  + K++ +  L +ALVDMY+KCGS+ +A  VF+ +  ++ ++W++
Sbjct: 282 RIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSA 341

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           +I A+ M G+  DA+  F  M  +G+ P+ +A++ +LSACSHAGL+EEGR +F  M +  
Sbjct: 342 IIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVV 401

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            L PRIEH+ C+VDLLGRAG +EEA +LI+ MP+EP++ IW +L+ AC ++ N+ +G   
Sbjct: 402 GLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERV 461

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           A+ +  LAP+ SG YV LSN+YA  G W  V RVR  M    I+K PG S
Sbjct: 462 AETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCS 511


>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
 gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 176/525 (33%), Positives = 292/525 (55%), Gaps = 19/525 (3%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGAC----GQMVDTRHVFDEITNKNVVFF 98
           +I+TLK++HA +++N  L SN S+  +L+  Y A     G +     +FDEI   +V   
Sbjct: 24  NIRTLKQIHASMVVNG-LMSNLSVVGELI--YSASLSVPGALKYAHKLFDEIPKPDVSIC 80

Query: 99  NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
           N ++R    +      + +Y  M   G  PD YT+  VLKACS       G   H  VV+
Sbjct: 81  NHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVR 140

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
            G   N +  N L+  +  CG L  A  + +D      V W+SM +GYA+ G+ DEA+ +
Sbjct: 141 HGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRL 200

Query: 219 CREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNS 278
             EM      P  D +A  +        + + S +E+F +   K++V+WN MI+ Y N  
Sbjct: 201 FDEM------PYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCG 254

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV-ERKKLQPNLR-- 335
            P EA+ ++ +M   G  P+ +++ S+L AC  L  L  G+++H Y+ E   +  ++   
Sbjct: 255 YPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVG 314

Query: 336 --LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             + NAL+DMYAKCGS+  A  VF  ++ +D+ +W ++I    +      ++ +F +M  
Sbjct: 315 TPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQR 373

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
             + P+ + F+ V+ ACSH+G ++EGR YF +M + Y + P I+H+ C+VD+LGRAG++E
Sbjct: 374 LKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLE 433

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA+  ++ M +EPN  +W +L+ AC +Y N+++G  A + +  +  ++SG YVLLSNIYA
Sbjct: 434 EAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYA 493

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQIIALPLRSSK 558
             G+W  V++VRK  +   +KK  G S+   D  +++   L SS+
Sbjct: 494 STGQWDGVQKVRKMFDDTRVKKPTGVSLIEEDDDKLMMRYLLSSE 538


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 160/450 (35%), Positives = 262/450 (58%), Gaps = 8/450 (1%)

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF-DPDCYTYPCVLKACSGSNSLLVGLQI 152
           +   FN L+R Y  +   ++++ V+  M   GF  PD +++  V+KA +   SL  G Q+
Sbjct: 236 DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQM 295

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           HC  +K GLD +LF    L+ MYG+CGC+  AR+V ++MP  ++V WN++V    +    
Sbjct: 296 HCQALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDV 355

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIA 272
             A ++  +M    +  +  +   +L          +   K +F ++ +++ VSW+ MI 
Sbjct: 356 SGAREIFDKM----LVRNHTSWNVMLAGYIKAG--ELECAKRIFSEMPHRDDVSWSTMIV 409

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            +++N    E+   + ++    + PN +S+  VL AC    A   G+ +H +VE+     
Sbjct: 410 GFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSW 469

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMR-CQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            + + NAL+DMY++CG++  AR VF+ M+  + +VSWTSMI+   M G G +A+ +F++M
Sbjct: 470 IVSVNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEM 529

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
             SG+ PD I+F+S+L ACSHAGL++EG  YF  M   Y + P +EH+ C+VDL GR+GK
Sbjct: 530 TESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGK 589

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
           +++AY  I QMP+ P   +W +L+ AC  + N+++       +  L PN SG  VLLSN+
Sbjct: 590 LQKAYSFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNV 649

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           YA AG+W DV  +RK M  + IKK+   S+
Sbjct: 650 YATAGKWKDVASIRKSMIVQRIKKITAWSL 679



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 153/336 (45%), Gaps = 20/336 (5%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   +++  ++++  H   N      ++  Y   G++   + +F E+ +++ V ++ +I
Sbjct: 354 DVSGAREIFDKMLVRNHTSWN-----VMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMI 408

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             + +N  + ++   ++ +      P+  +   VL ACS S +   G  +H  V K G  
Sbjct: 409 VGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYS 468

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCRE 221
           + +   N L+ MY +CG +  AR V   M  K  +V+W SM+AG A +G  +EA+ +  E
Sbjct: 469 WIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNE 528

Query: 222 MESLRIKPDADTMASLLPSVTNT----SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
           M    + PD  +  SLL + ++       E   S  +    ++   +  +  M+ +Y  +
Sbjct: 529 MTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVYHIE-PAVEHYGCMVDLYGRS 587

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
               +A     QM    I P AI   ++L AC     + L  ++ + +   +L PN   +
Sbjct: 588 GKLQKAYSFICQMP---IPPTAIVWRTLLGACSSHGNIELAEQVKQRL--NELDPNNSGD 642

Query: 338 NALV-DMYAKCGSLTEARTVFDQM---RCQDVVSWT 369
             L+ ++YA  G   +  ++   M   R + + +W+
Sbjct: 643 LVLLSNVYATAGKWKDVASIRKSMIVQRIKKITAWS 678



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 159/345 (46%), Gaps = 18/345 (5%)

Query: 151 QIHCSVVKVGLDYNLFNGNGLV--AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
           QIH   +K G+D + +    L+          L  ARR+L   P  D   +N++V GY++
Sbjct: 190 QIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGYSE 249

Query: 209 NGRFDEALDVCRE-MESLRIKPDADTMASLLPSVTN-TSPENVLSVKEMFLK--LDNKNL 264
           +     ++ V  E M    I PD+ + A ++ +  N  S      +    LK  LD+   
Sbjct: 250 SDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHGLDSHLF 309

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           V+   +I +Y        A  ++ +M     +PN ++  +V+ AC   + +   R+I   
Sbjct: 310 VA-TTLIGMYGECGCVGFARKVFDEMP----QPNLVAWNAVVTACFRGNDVSGAREIF-- 362

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
              K L  N    N ++  Y K G L  A+ +F +M  +D VSW++MI  +  +G   ++
Sbjct: 363 --DKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNES 420

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ-YKLVPRIEHFACLV 443
            + F ++L + + P+ ++   VLSACS +G  E G+     + +  Y  +  + +   L+
Sbjct: 421 FSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNN--ALI 478

Query: 444 DLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
           D+  R G V  A  + + M  + +   W S++A   ++ + +  I
Sbjct: 479 DMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAI 523


>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
 gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 179/517 (34%), Positives = 277/517 (53%), Gaps = 35/517 (6%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +   L+  Y       ++  VFDE+  ++V  +N +I  +  +     AL ++  M   G
Sbjct: 144 VASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSG 203

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           F+P+  +    + ACS    L  G +IH   VK G + + +  + LV MYGKC CL+ AR
Sbjct: 204 FEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAR 263

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL------- 238
            V   MP K +V WNSM+ GY   G     +++   M     +P   T+ S+L       
Sbjct: 264 EVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSR 323

Query: 239 -------------PSVTNTSPENVLSVKEMFLKLDNKNLV-------------SWNVMIA 272
                         SV N       S+ +++ K    NL              SWNVMI+
Sbjct: 324 NLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMIS 383

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y +     +AV++Y QM   G++P+ ++  SVLPAC  L+AL  G++IH  +   +L+ 
Sbjct: 384 SYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLET 443

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           +  L +AL+DMY+KCG+  EA  +F+ +  +DVVSWT MISAYG  GQ  +A+  F +M 
Sbjct: 444 DELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQ 503

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
             GL PD +  ++VLSAC HAGL++EG  +F  M  +Y + P IEH++C++D+LGRAG++
Sbjct: 504 KFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRL 563

Query: 453 EEAYDLIKQMP-MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
            EAY++I+Q P    N  +  +L +ACCL+    +G   A  +    P+ +  Y++L N+
Sbjct: 564 LEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPDDASTYMVLFNL 623

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           YA    W   +RVR  M   G++K PG S +EM+D+V
Sbjct: 624 YASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKV 660



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 218/450 (48%), Gaps = 36/450 (8%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI-TNKNVVFFNVLIRSYVN 107
           KL  Q I+   L  +  +   L+  Y  C      RHVF+      +V  +N L+  Y  
Sbjct: 24  KLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSK 83

Query: 108 NYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
           N +++D L V+K + +     PD +T+P V+KA        +G  IH  VVK G   ++ 
Sbjct: 84  NSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVV 143

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
             + LV MY K    + + +V ++MP +DV +WN++++ + Q+G  ++AL++   MES  
Sbjct: 144 VASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSG 203

Query: 227 IKPDADTMASLLPSVT--------------------------NTSPENVLS-------VK 253
            +P++ ++   + + +                          N++  ++          +
Sbjct: 204 FEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAR 263

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           E+F K+  K+LV+WN MI  Y         V++  +M + G  P+  ++ S+L AC    
Sbjct: 264 EVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSR 323

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
            LL G+ IH YV R  +  ++ +  +L+D+Y KCG    A TVF + +     SW  MIS
Sbjct: 324 NLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMIS 383

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
           +Y   G  + AV ++ +M+  G+ PD + F SVL ACS    LE+G+     ++E  +L 
Sbjct: 384 SYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISES-RLE 442

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
                 + L+D+  + G  +EA+ +   +P
Sbjct: 443 TDELLLSALLDMYSKCGNEKEAFRIFNSIP 472



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 102/195 (52%), Gaps = 4/195 (2%)

Query: 50  LHAQII----INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           LH + I    I   ++++  +   L+  Y  CG+      VF +        +NV+I SY
Sbjct: 326 LHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSY 385

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
           ++   ++ A+ VY  M   G  PD  T+  VL ACS   +L  G QIH S+ +  L+ + 
Sbjct: 386 ISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDE 445

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
              + L+ MY KCG  KEA R+ N +P KDVV+W  M++ Y  +G+  EAL    EM+  
Sbjct: 446 LLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKF 505

Query: 226 RIKPDADTMASLLPS 240
            +KPD  T+ ++L +
Sbjct: 506 GLKPDGVTLLAVLSA 520



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 251 SVKEMFLKLDNKNLVS-WNVMIAVYANNSMPAEAVDLYLQMEVHGI-EPNAISVASVLPA 308
           S + +F   D ++ V  WN +++ Y+ NSM  + ++++ ++    I  P++ +  +V+ A
Sbjct: 57  SARHVFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKA 116

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
            G L    LGR IH  V +     ++ + ++LV MYAK      +  VFD+M  +DV SW
Sbjct: 117 YGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASW 176

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMT 427
            ++IS +  SG+   A+ LF +M  SG  P+S++    +SACS    LE G+  + K + 
Sbjct: 177 NTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVK 236

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
           + ++L   +   + LVD+ G+   +E A ++ ++MP   +   W S++
Sbjct: 237 KGFELDEYVN--SALVDMYGKCDCLEVAREVFQKMP-RKSLVAWNSMI 281



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSG 379
           +H+ +    L+ ++ L  +L+++Y  C     AR VF+    + DV  W S++S Y  + 
Sbjct: 26  VHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSKNS 85

Query: 380 QGYDAVALFSKMLMSGLC-PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
             +D + +F ++L   +C PDS  F +V+ A    G    GR    ++ +    V  +  
Sbjct: 86  MFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKS-GYVCDVVV 144

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
            + LV +  +    E +  +  +MP E +   W ++++  C Y +
Sbjct: 145 ASSLVGMYAKFNLFENSLQVFDEMP-ERDVASWNTVIS--CFYQS 186


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 175/466 (37%), Positives = 264/466 (56%), Gaps = 44/466 (9%)

Query: 113 DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV 172
           DAL  +  M       D +TY  ++KA S +    V   +H  VVK+G   + F GN L+
Sbjct: 423 DALAAFSAMPRR----DSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALI 477

Query: 173 AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
             Y K G   +AR+V ++MP +DVV+WN+ +A   + G       +  EM      P+ D
Sbjct: 478 DAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM------PEKD 531

Query: 233 TMA--SLLPSVTNTS------------PE-NVLSVKEM----------------FLKLDN 261
           T++  ++L   T               PE NV+S   M                F K+ +
Sbjct: 532 TVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPS 591

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           KNLV+W +M++  A   +  EA  L+ QM+   +E +  +V S+L AC +  +L LG++I
Sbjct: 592 KNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRI 651

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQ 380
           HRYV ++ L  +  + NAL+DM+ KCG +  A  VFD    Q D VSW S+I  + M G 
Sbjct: 652 HRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGH 711

Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA 440
           G  A+ LF++M   G  PD++  ++VLSAC+H G ++EGR +F  M   Y ++P+IEH+ 
Sbjct: 712 GDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYG 771

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500
           C++DLLGR G ++EA DLIK MP EPNE IWGSL++AC L+ N++   +A + +  L P+
Sbjct: 772 CMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPS 831

Query: 501 QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMND 545
            +G Y +LSNIYA+AG+W D+ + R  M   G +K  G+S VE+N+
Sbjct: 832 NAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNE 877



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 155/344 (45%), Gaps = 36/344 (10%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGAC--GQMVDTRHVFDEITN 92
           N ILD Y       ++ A   + Q +     +    M   G C  G +   R +FD++ +
Sbjct: 536 NTILDGY---TKAGEVEAAFELFQRMPERNVVSWSTM-VSGYCKKGDLEMARVIFDKMPS 591

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           KN+V + +++ +     L  +A  ++  M     + D      +L AC+ S SL +G +I
Sbjct: 592 KNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRI 651

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN-DMPSKDVVTWNSMVAGYAQNGR 211
           H  V K  L  +    N L+ M+ KCGC+  A  V + +   KD V+WNS++ G+A +G 
Sbjct: 652 HRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGH 711

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLVS 266
            D+AL++  +M+     PDA TM ++L + T+     V   +  F  ++        +  
Sbjct: 712 GDKALELFAQMKQQGFNPDAVTMINVLSACTHMG--FVDEGRRHFSNMERDYGIMPQIEH 769

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           +  MI +     +  EAVDL   M     EPN +   S+L AC          ++H+ VE
Sbjct: 770 YGCMIDLLGRGGLIKEAVDLIKSMP---WEPNEVIWGSLLSAC----------RLHKNVE 816

Query: 327 R--------KKLQP-NLRLENALVDMYAKCGSLTEARTVFDQMR 361
                     KLQP N      L ++YA+ G  ++      QM+
Sbjct: 817 YAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMK 860



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 155/345 (44%), Gaps = 44/345 (12%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y   G   D R VFDE+  ++VV +N  + + V          ++  M    
Sbjct: 472 VGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMP--- 528

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            + D  ++  +L   + +  +    ++   +     + N+ + + +V+ Y K G L+ AR
Sbjct: 529 -EKDTVSWNTILDGYTKAGEVEAAFELFQRMP----ERNVVSWSTMVSGYCKKGDLEMAR 583

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT- 244
            + + MPSK++VTW  MV+  AQ G  DEA  +  +M+   ++ D   + S+L +   + 
Sbjct: 584 VIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESG 643

Query: 245 -------------------SPENVLSVKEMFLKLD--------------NKNLVSWNVMI 271
                              S     ++ +MF K                 K+ VSWN +I
Sbjct: 644 SLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSII 703

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KL 330
             +A +    +A++L+ QM+  G  P+A+++ +VL AC  +  +  GR+    +ER   +
Sbjct: 704 GGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGI 763

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
            P +     ++D+  + G + EA  +   M  + + V W S++SA
Sbjct: 764 MPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSA 808


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 176/542 (32%), Positives = 288/542 (53%), Gaps = 35/542 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++K  + +H+ +II      N  IG  L+  Y  CG  +D   VF  I   ++V ++ LI
Sbjct: 329 NLKQGQVIHS-LIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALI 387

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
                     +++ ++  M +    P+ YT   +L A + + +L  G  IH  V K G +
Sbjct: 388 TCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFE 447

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++   N LV MY K GC+ +  ++   M  +D+++WN+ ++G    G +D  L +   M
Sbjct: 448 TDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHM 507

Query: 223 ESLRIKPDADTMASLLPS-----------------VTNTSPENV--------LSVKEMFL 257
                 P+  T  S+L S                 + N   +N         +  K M+L
Sbjct: 508 LEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYL 567

Query: 258 --------KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                   +L  ++L +W V+I  YA  +   +A++ + QM+  G++PN  ++A  L  C
Sbjct: 568 EDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGC 627

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L++L  G+++H  V +     ++ + +ALVDMYAKCG + EA  +F+ +  +D ++W 
Sbjct: 628 SSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWN 687

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           ++I  Y  +GQG  A+  F  ML  G+ PD + F  +LSACSH GL+EEG+ +F  M   
Sbjct: 688 TIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRD 747

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           + + P ++H AC+VD+LGR GK +E  D I++M +  N  IW +++ A  +++N+ +G  
Sbjct: 748 FGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEK 807

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           AA+ +F L P +   Y+LLSNI+A  GRW DVKRVR  M+SKG+KK PG S VE N QV 
Sbjct: 808 AANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVH 867

Query: 549 II 550
             
Sbjct: 868 TF 869



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 182/397 (45%), Gaps = 34/397 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +H  +I+   ++ +  + + L+  Y  C      R V  ++ +++VV +  LI+  V 
Sbjct: 132 KAIHG-LIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVA 190

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                D++++++ M   G  P+ +T    LKACS   +L +G Q+H    K+GL  +LF 
Sbjct: 191 EGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFV 250

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           G+ LV +Y KCG ++ A ++   MP ++ VTWN ++ GYAQ G     L +   M  L +
Sbjct: 251 GSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDV 310

Query: 228 KPDADTMASLLPSVTNTSPEN---------------------------------VLSVKE 254
           K +  T+ ++L    N+                                      +    
Sbjct: 311 KCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIG 370

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F  +   ++V W+ +I          E++ L+  M +    PN  ++ S+L A  +   
Sbjct: 371 VFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGN 430

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           L  G+ IH  V +   + ++ + NALV MY K G + +   +++ M  +D++SW + +S 
Sbjct: 431 LQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSG 490

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
               G     + +F  ML  G  P+   F+S+L +CS
Sbjct: 491 LHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 151/321 (47%), Gaps = 33/321 (10%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           Y  +L+ C+   SL V   IH  +VK  ++ +      LV +Y KC     AR VL  MP
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS---------------- 236
            +DVV+W +++ G    G  ++++ + +EM++  I P+  T+A+                
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 237 ----------LLPSVTNTSPENVLS-------VKEMFLKLDNKNLVSWNVMIAVYANNSM 279
                     LL     ++  ++ +         +MF+ +  +N V+WNV++  YA    
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
               + L+  M    ++ N  ++ +VL  C +   L  G+ IH  + +   + N  +   
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           LVDMY+KCG   +A  VF  ++  D+V W+++I+     GQ  +++ LF  M +    P+
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPN 414

Query: 400 SIAFVSVLSACSHAGLLEEGR 420
                S+LSA ++ G L+ G+
Sbjct: 415 QYTICSLLSAATNTGNLQYGQ 435



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 6/175 (3%)

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
           +S+L  C    +L + + IH  + +  + P+  L  +LV++YAKC     AR V  +M  
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPD 175

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           +DVVSWT++I      G   D++ LF +M   G+ P+     + L ACS    L+ G+  
Sbjct: 176 RDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGK-- 233

Query: 423 FKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
            ++  + +KL   ++ F  + LVDL  + G++E A  +   MP E N+  W  L+
Sbjct: 234 -QMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP-EQNDVTWNVLL 286


>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 548

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 178/534 (33%), Positives = 293/534 (54%), Gaps = 19/534 (3%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGAC----GQMVDTRHVFDEITNKNVVFF 98
           + +TL ++HA +++N  L SN S+  +L+  Y A     G +     +F+EI   +V   
Sbjct: 24  NFRTLMQIHAFMVVNG-LMSNLSVVGELI--YSASLSVPGALKYAHKLFEEIPKPDVSIC 80

Query: 99  NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
           N ++R    +      + +Y  M   G  PD YT+  VLKACS       G  IH  VV+
Sbjct: 81  NHVLRGSAQSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAIHGKVVR 140

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
            G   N +  N L+  +  CG L  A  + +D      V W+SM +GYA+ G+ DEA+ +
Sbjct: 141 HGFLLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRL 200

Query: 219 CREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNS 278
             EM      PD D +A  +          + S +E+F +   K++V+WN MI+ Y N  
Sbjct: 201 FDEM------PDKDQVAWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMISGYVNCG 254

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV-ERKKLQPNLR-- 335
            P EA+ ++ +M   G  P+ +++ S+L AC  L  L  G+++H Y+ E   +  ++   
Sbjct: 255 YPKEALSIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVG 314

Query: 336 --LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             + NAL+DMYAKCGS+  A  VF  M+ +D+ +W ++I    +      +V +F +M  
Sbjct: 315 TPIWNALIDMYAKCGSIDRAIEVFRGMKDRDLSTWNTLIVGLALH-HAEGSVEMFEEMQR 373

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
             + P+ + F+ V+ ACSH+G ++EGR YF +M + Y + P I+H+ C+VD+LGRAG +E
Sbjct: 374 LKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGLLE 433

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA+  ++ M +EPN  +W +L+ AC +Y N+++G  A + +  +  ++SG YVLLSNIYA
Sbjct: 434 EAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYA 493

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQIIALPLRSSKCLTTGPKNV 567
             G+W  V++VRK  +   +KK  G S+   D  +++   L SS+  +   K +
Sbjct: 494 STGQWDGVQKVRKMFDDTRVKKPTGISLIEEDDDKLMMRYLLSSEAESKSRKRI 547


>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
          Length = 549

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 179/499 (35%), Positives = 289/499 (57%), Gaps = 16/499 (3%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGA---CGQMVDTRHVFDEITNKNVVFFNV 100
           ++ LK LHAQII+  H  +N ++ L  + ++ A    G +   + +FD+I   N   +N 
Sbjct: 1   MRGLKLLHAQIIL--HGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNS 58

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           LIR Y N+    DA+ +++ M   G  P+ +T P VLKAC   ++    + +H   +K+G
Sbjct: 59  LIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLG 118

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK---DVVTWNSMVAGYAQNGRFDEALD 217
           +   +F  N L+A+Y  CG +  AR++ +D+  K   D++  N++V  YA+ G    A  
Sbjct: 119 IGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHSA-- 176

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSPENVLSV-KEMFLKLDNKNLVSWNVMIAVYAN 276
                +++  +     + S    ++  +    + V +++F ++  KN+VSWN MI+ Y  
Sbjct: 177 -----QAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLR 231

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
                EA+DL+ +M    + P+  ++ S+L AC  L  L++G+KIH Y+   K    + L
Sbjct: 232 EGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTL 291

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            N+L+DMYAKCG +  A  +F +M  +++VSW  +I A  + G G +A+ LF +M   G 
Sbjct: 292 YNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGT 351

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PD I    +LSACSH+GL++ G YYF  M   Y++   IEH+AC+VDLLGR G + EA 
Sbjct: 352 LPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAI 411

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           +LI +MPM+P+  +WG+L+ AC ++ N++IG      +  L P+  G YVL+SNIY +A 
Sbjct: 412 ELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQ 471

Query: 517 RWGDVKRVRKFMNSKGIKK 535
           RW DVK++RK M  +GIKK
Sbjct: 472 RWEDVKKIRKLMIDRGIKK 490


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  317 bits (813), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 176/540 (32%), Positives = 288/540 (53%), Gaps = 35/540 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++K  + +H+ +II      N  IG  L+  Y  CG  +D   VF  I   ++V ++ LI
Sbjct: 329 NLKQGQVIHS-LIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALI 387

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
                     +++ ++  M +    P+ YT   +L A + + +L  G  IH  V K G +
Sbjct: 388 TCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFE 447

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++   N LV MY K GC+ +  ++   M  +D+++WN+ ++G    G +D  L +   M
Sbjct: 448 TDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHM 507

Query: 223 ESLRIKPDADTMASLLPS-----------------VTNTSPENV--------LSVKEMFL 257
                 P+  T  S+L S                 + N   +N         +  K M+L
Sbjct: 508 LEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYL 567

Query: 258 --------KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                   +L  ++L +W V+I  YA  +   +A++ + QM+  G++PN  ++A  L  C
Sbjct: 568 EDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGC 627

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L++L  G+++H  V +     ++ + +ALVDMYAKCG + EA  +F+ +  +D ++W 
Sbjct: 628 SSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWN 687

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           ++I  Y  +GQG  A+  F  ML  G+ PD + F  +LSACSH GL+EEG+ +F  M   
Sbjct: 688 TIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRD 747

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           + + P ++H AC+VD+LGR GK +E  D I++M +  N  IW +++ A  +++N+ +G  
Sbjct: 748 FGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEK 807

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           AA+ +F L P +   Y+LLSNI+A  GRW DVKRVR  M+SKG+KK PG S VE N QV 
Sbjct: 808 AANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVH 867



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/537 (22%), Positives = 232/537 (43%), Gaps = 70/537 (13%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +H  +I+   ++ +  + + L+  Y  C      R V  ++ +++VV +  LI+  V 
Sbjct: 132 KAIHG-LIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVA 190

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                D++++++ M   G  P+ +T    LKACS   +L +G Q+H    K+GL  +LF 
Sbjct: 191 EGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFV 250

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           G+ LV +Y KCG ++ A ++   MP ++ VTWN ++ GYAQ G     L +   M  L +
Sbjct: 251 GSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDV 310

Query: 228 KPDADTMASLLPSVTNTSPEN---------------------------------VLSVKE 254
           K +  T+ ++L    N+                                      +    
Sbjct: 311 KCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIG 370

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F  +   ++V W+ +I          E++ L+  M +    PN  ++ S+L A  +   
Sbjct: 371 VFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGN 430

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           L  G+ IH  V +   + ++ + NALV MY K G + +   +++ M  +D++SW + +S 
Sbjct: 431 LQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSG 490

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS-----------HAGL----LEEG 419
               G     + +F  ML  G  P+   F+S+L +CS           HA +    L++ 
Sbjct: 491 LHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDN 550

Query: 420 RYYFKIMTEQYKLVPRIEH---------------FACLVDLLGRAGKVEEAYDLIKQMPM 464
            +    + + Y     +E                +  ++    +  + E+A +  +QM  
Sbjct: 551 NFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQ 610

Query: 465 E---PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV--LLSNIYAKAG 516
           E   PNE      ++ C   ++++ G      +F  + + S  +V   L ++YAK G
Sbjct: 611 EGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFK-SGHVSDMFVGSALVDMYAKCG 666



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 151/321 (47%), Gaps = 33/321 (10%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           Y  +L+ C+   SL V   IH  +VK  ++ +      LV +Y KC     AR VL  MP
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS---------------- 236
            +DVV+W +++ G    G  ++++ + +EM++  I P+  T+A+                
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 237 ----------LLPSVTNTSPENVLS-------VKEMFLKLDNKNLVSWNVMIAVYANNSM 279
                     LL     ++  ++ +         +MF+ +  +N V+WNV++  YA    
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
               + L+  M    ++ N  ++ +VL  C +   L  G+ IH  + +   + N  +   
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           LVDMY+KCG   +A  VF  ++  D+V W+++I+     GQ  +++ LF  M +    P+
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPN 414

Query: 400 SIAFVSVLSACSHAGLLEEGR 420
                S+LSA ++ G L+ G+
Sbjct: 415 QYTICSLLSAATNTGNLQYGQ 435



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 6/175 (3%)

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
           +S+L  C    +L + + IH  + +  + P+  L  +LV++YAKC     AR V  +M  
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPD 175

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           +DVVSWT++I      G   D++ LF +M   G+ P+     + L ACS    L+ G+  
Sbjct: 176 RDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGK-- 233

Query: 423 FKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
            ++  + +KL   ++ F  + LVDL  + G++E A  +   MP E N+  W  L+
Sbjct: 234 -QMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP-EQNDVTWNVLL 286


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  317 bits (813), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 176/506 (34%), Positives = 280/506 (55%), Gaps = 68/506 (13%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNK-----------------------------------N 94
           +   Y  CG+M D R VFD +++K                                   N
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEAN 216

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
           +V +N ++  +  +  + +A+ +++ +   GF PD  T   VL +   S  L +G  IH 
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHG 276

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            V+K GL  +    + ++ MYGK G +     + N     +    N+ + G ++NG  D+
Sbjct: 277 YVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDK 336

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
           AL    EM  L                           KE  ++L   N+VSW  +IA  
Sbjct: 337 AL----EMFEL--------------------------FKEQTMEL---NVVSWTSIIAGC 363

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           A N    EA++L+ +M+V G++PN +++ S+LPACG+++AL  GR  H +  R  L  N+
Sbjct: 364 AQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNV 423

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + +AL+DMYAKCG +  ++ VF+ M  +++V W S+++ + M G+  + +++F  ++ +
Sbjct: 424 HVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRT 483

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
            L PD I+F S+LSAC   GL +EG  YFK+M+E+Y + PR+EH++C+V+LLGRAGK++E
Sbjct: 484 RLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQE 543

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           AYDLIK+MP EP+  +WG+L+ +C L +N+D+  +AA+ +FHL P   G YVLLSNIYA 
Sbjct: 544 AYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAA 603

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS 540
            G W +V  +R  M S G+KK PG S
Sbjct: 604 KGMWTEVDSIRNKMESLGLKKNPGCS 629



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/460 (25%), Positives = 209/460 (45%), Gaps = 71/460 (15%)

Query: 51  HAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYL 110
           HA+I+      ++  I  KL+ +Y       D   V   I +  +  F+ LI +     L
Sbjct: 38  HARIL-KSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKL 96

Query: 111 YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG 170
           +  ++ V+  M  HG  PD +  P + K C+  ++  VG QIHC     GLD + F    
Sbjct: 97  FTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGS 156

Query: 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
           +  MY +CG + +AR+V + M  KDVVT ++++  YA+ G  +E + +  EMES  I+  
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA- 215

Query: 231 ADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
                                           N+VSWN +++ +  +    EAV ++ ++
Sbjct: 216 --------------------------------NIVSWNGILSGFNRSGYHKEAVVMFQKI 243

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
              G  P+ ++V+SVLP+ GD   L +GR IH YV ++ L  +  + +A++DMY K G +
Sbjct: 244 HHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHV 303

Query: 351 TEARTVFDQMRCQD-----------------------------------VVSWTSMISAY 375
               ++F+Q    +                                   VVSWTS+I+  
Sbjct: 304 YGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGC 363

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
             +G+  +A+ LF +M ++G+ P+ +   S+L AC +   L  GR         + L+  
Sbjct: 364 AQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVH-LLDN 422

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
           +   + L+D+  + G++  +  +   MP + N   W SL+
Sbjct: 423 VHVGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLM 461



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 57/277 (20%), Positives = 114/277 (41%), Gaps = 50/277 (18%)

Query: 59  HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVY 118
           HL  N  +G  L+  Y  CG++  ++ VF+ +  KN+V +N L+  +  +    + + ++
Sbjct: 418 HLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIF 477

Query: 119 KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ-IHCSVVKVGLDYNLFNGNGLVAMYGK 177
           +++      PD  ++  +L AC        G +       + G+   L + + +V + G+
Sbjct: 478 ESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGR 537

Query: 178 CGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS 236
            G L+EA  ++ +MP + D   W ++             L+ CR    L+   D   +A+
Sbjct: 538 AGKLQEAYDLIKEMPFEPDSCVWGAL-------------LNSCR----LQNNVDLAEIAA 580

Query: 237 LLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE 296
                            E    L+ +N  ++ ++  +YA   M  E   +  +ME  G++
Sbjct: 581 -----------------EKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLK 623

Query: 297 PNAISVASVLPACGDLS------ALLLGRKIHRYVER 327
            N        P C  +        LL G K H  +++
Sbjct: 624 KN--------PGCSWIQVKNRVYTLLAGDKSHPQIDQ 652


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 170/532 (31%), Positives = 289/532 (54%), Gaps = 45/532 (8%)

Query: 61  HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKN 120
           H N  +   L+  Y  CG M D R VFD +  +NVV +  L+  +V N     A+HV++ 
Sbjct: 99  HDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLMVGFVQNSQPKHAIHVFQE 158

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M   G  P  YT   VL ACS   SL +G Q H  ++K  +D++   G+ L ++Y KCG 
Sbjct: 159 MLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGR 218

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           L++A +  + +  K+V++W S V+  A NG   + L +  EM ++ IKP+  T+ S L  
Sbjct: 219 LEDALKTFSRIREKNVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQ 278

Query: 241 V----------------------TNTSPEN-----------VLSVKEMFLKLDNKNLVSW 267
                                  +N    N           ++    +F ++D+ ++V+W
Sbjct: 279 CCEILSLELGTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTW 338

Query: 268 NVMIAVYAN------NSMPA-----EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
           N MIA +A       +++ A     EA+ L+ ++ + G++P+  +++SVL  C  + A+ 
Sbjct: 339 NAMIAGHAQMMELTKDNLSACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIE 398

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
            G +IH    +     ++ +  +L+ MY+KCGS+  A   F +M  + +++WTSMI+ + 
Sbjct: 399 QGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFS 458

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
             G    A+ +F  M ++G+ P+++ FV VLSACSHAG++ +   YF+IM ++YK+ P +
Sbjct: 459 QHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPAM 518

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           +H+ C+VD+  R G++E+A + IK+M  EP+E IW + +A C  + N+++G  AA+ +  
Sbjct: 519 DHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCKSHGNLELGFYAAEQLLS 578

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           L P     YVLL N+Y  A R+ DV RVRK M  + + K+   S + + D+V
Sbjct: 579 LKPKDPETYVLLLNMYLSAERFEDVSRVRKMMEEEKVGKLKDWSWISIKDKV 630



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 177/377 (46%), Gaps = 51/377 (13%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           Y  +L+ C  + S      +H  V+K G   N F  + LV +Y KCG +++ARRV ++M 
Sbjct: 70  YVPLLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNML 129

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP------ 246
            ++VV W +++ G+ QN +   A+ V +EM      P   T++++L + ++         
Sbjct: 130 RRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQ 189

Query: 247 ------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                         E+ L   + F ++  KN++SW   ++  A+
Sbjct: 190 FHAYIIKYHVDFDASVGSALCSLYSKCGRLEDAL---KTFSRIREKNVISWTSAVSACAD 246

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N  P + + L+++M    I+PN  ++ S L  C ++ +L LG +++    +   + NLR+
Sbjct: 247 NGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRV 306

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM-----------SGQGYDAV 385
            N+L+ +Y K G + EA  +F++M    +V+W +MI+ +               +G +A+
Sbjct: 307 RNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEAL 366

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
            LFSK+ +SG+ PD     SVLS CS    +E+G       T +   +  +     L+ +
Sbjct: 367 KLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGE-QIHAQTIKTGFLSDVIVSTSLISM 425

Query: 446 LGRAGKVEEAYDLIKQM 462
             + G +E A     +M
Sbjct: 426 YSKCGSIERASKAFLEM 442



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 108/443 (24%), Positives = 195/443 (44%), Gaps = 53/443 (11%)

Query: 37  ILDKYPDIKTLK---KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
           +L     +++LK   + HA  II  H+  + S+G  L   Y  CG++ D    F  I  K
Sbjct: 174 VLHACSSLQSLKLGDQFHA-YIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREK 232

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           NV+ +   + +  +N      L ++  M      P+ +T    L  C    SL +G Q++
Sbjct: 233 NVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVY 292

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQN---- 209
              +K G + NL   N L+ +Y K GC+ EA R+ N M    +VTWN+M+AG+AQ     
Sbjct: 293 SLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELT 352

Query: 210 -------GRFDEALDVCREMESLRIKPDADTMASLLP----------------------- 239
                   R  EAL +  ++    +KPD  T++S+L                        
Sbjct: 353 KDNLSACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGF 412

Query: 240 ---SVTNTSPENVLS-------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
               + +TS  ++ S         + FL++  + +++W  MI  ++ + M  +A+ ++  
Sbjct: 413 LSDVIVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFED 472

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCG 348
           M + G+ PNA++   VL AC     +         +++K K++P +     +VDM+ + G
Sbjct: 473 MSLAGVRPNAVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECMVDMFVRLG 532

Query: 349 SLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSV 406
            L +A     +M  +     W++ I+  G    G   +  ++   +  L P D   +V +
Sbjct: 533 RLEQALNFIKKMNYEPSEFIWSNFIA--GCKSHGNLELGFYAAEQLLSLKPKDPETYVLL 590

Query: 407 LSACSHAGLLEEGRYYFKIMTEQ 429
           L+    A   E+     K+M E+
Sbjct: 591 LNMYLSAERFEDVSRVRKMMEEE 613



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 2/174 (1%)

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           +L  C D  +    + +H +V +     N  + + LV++YAKCG++ +AR VFD M  ++
Sbjct: 73  LLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRN 132

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
           VV+WT+++  +  + Q   A+ +F +ML +G  P      +VL ACS    L+ G  +  
Sbjct: 133 VVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHA 192

Query: 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
            +  +Y +       + L  L  + G++E+A     ++  E N   W S V+AC
Sbjct: 193 YII-KYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIR-EKNVISWTSAVSAC 244


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 185/544 (34%), Positives = 289/544 (53%), Gaps = 45/544 (8%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC  ++D        K +HA+I+ + ++ S+  +G  L+  Y  CG +   R  F++I N
Sbjct: 256 ACTKLVDG-------KAIHARIV-SSNMESD-FVGSALINMYARCGDVSSARQAFEKIQN 306

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           K+VV +  L+ +YV    Y +AL +Y  M   G   D  TY   L AC+   +L  G  I
Sbjct: 307 KHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAI 366

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGR 211
           H  V + G   +L     L+ MY KCG L  AR V N +  K +V  W +M++ YAQ G 
Sbjct: 367 HSRVFECGFQ-SLVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGH 425

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPS----------------------VTNTSPENV 249
             EAL++  +M +   +P+  T +++L +                       +N + +N 
Sbjct: 426 TQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNA 485

Query: 250 LSV-----------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
           L             K  F     K+LVSWN MI  YA + +  EA+DLY  M   G+ P+
Sbjct: 486 LVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPD 545

Query: 299 AISVASVLPACGDLSALLLGRKIH-RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
            +++AS L AC    +L LGR+IH R ++ +  + +L ++ ALV+MY +CG L  AR++F
Sbjct: 546 EVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMF 605

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           + M  +DV+SWT+M SAY   G     + L+ +M++ G+ P+ I F S+L  CSHAGLL 
Sbjct: 606 EDMGQRDVLSWTAMTSAYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLA 665

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            G   F  M  ++++VP  EHF C+VDLLGR+G++ +A  L++ MP +P+   W +++ +
Sbjct: 666 RGVECFLEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWLTVLGS 725

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
           C  +S+ D    AA  +  L P  +  Y LLS+I+  AG   +   V+  M   G+KK P
Sbjct: 726 CKTHSDADTAKRAARRVKELDPENTSLYSLLSSIFTAAGLPQEALEVQLSMKEMGLKKPP 785

Query: 538 GASV 541
           G S+
Sbjct: 786 GQSL 789



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 172/581 (29%), Positives = 275/581 (47%), Gaps = 79/581 (13%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN-KNVVFFNVLIRSYV 106
           K +H  ++   H   N  +G  L++ YG CG++   R  F    + K V  +N ++ +Y 
Sbjct: 62  KLVHRHLLRTGH-GRNQFLGNLLIQMYGNCGEIHLARAAFQNFASIKAVACYNQMLSAYG 120

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG--LDYN 164
            N L+  AL +Y  M   G +PD  TY  VL +CS   SL    +IH S+++    +  N
Sbjct: 121 KNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIHASIIEAPQIIRDN 180

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
           L   N LV MYGKCG ++EAR+V + + ++D V+W SM++ YA NG  DEALD+ ++M++
Sbjct: 181 LSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDA 240

Query: 225 LRIKPDADTMASLLPSVT---------------NTSPE--------------NVLSVKEM 255
             I+PD+ T  S L + T               N   +              +V S ++ 
Sbjct: 241 DGIQPDSITFTSALLACTKLVDGKAIHARIVSSNMESDFVGSALINMYARCGDVSSARQA 300

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F K+ NK++V W  ++  Y       EA+DLY +M+  G+  + ++  + L AC  L AL
Sbjct: 301 FEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGAL 360

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
             G+ IH  V     Q +L +  AL+ MYAKCG L  AR VF+++R + +V  WT+MISA
Sbjct: 361 KEGKAIHSRVFECGFQ-SLVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISA 419

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI--MTEQYKL 432
           Y  +G   +A+ L+ +M+  G  P+   F +VL+ACS +G LE G    KI    E  +L
Sbjct: 420 YAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAG---MKIHGHVENSEL 476

Query: 433 VPRIEHFACLVDLLGRAGKVE-------------------------------EAYDLIKQ 461
              +     LV +  + G +E                               EA DL + 
Sbjct: 477 ASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQT 536

Query: 462 MPME---PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV--LLSNIYAKAG 516
           M  +   P+E    S ++AC +  ++ +G      +      +S   V   L N+Y + G
Sbjct: 537 MTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCG 596

Query: 517 RWGDVKRVRKFMNSKGI---KKMPGASVEMNDQVQIIALPL 554
           R    + + + M  + +     M  A  +     Q++ L L
Sbjct: 597 RLETARSMFEDMGQRDVLSWTAMTSAYAQQGHADQVLDLYL 637



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 138/492 (28%), Positives = 234/492 (47%), Gaps = 80/492 (16%)

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
           + FN+  ++ V      DAL    +   HG+      Y  +L+ C    SL  G  +H  
Sbjct: 12  LVFNLKKKAPVARISVSDALEQL-DQRRHGY---VELYDELLQQCGRLGSLAEGKLVHRH 67

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS-KDVVTWNSMVAGYAQNGRFDE 214
           +++ G   N F GN L+ MYG CG +  AR    +  S K V  +N M++ Y +NG ++ 
Sbjct: 68  LLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFASIKAVACYNQMLSAYGKNGLWNR 127

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVT------------------------NTSPENVL 250
           AL++   M     +PD  T   +L S +                        N S +N L
Sbjct: 128 ALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIHASIIEAPQIIRDNLSLQNAL 187

Query: 251 --------SVKE---MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                   SV+E   +F  + N++ VSW  MI+ YANN    EA+DLY QM+  GI+P++
Sbjct: 188 VNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDS 247

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           I+  S L AC   + L+ G+ IH  +    ++ +  + +AL++MYA+CG ++ AR  F++
Sbjct: 248 ITFTSALLAC---TKLVDGKAIHARIVSSNMESDF-VGSALINMYARCGDVSSARQAFEK 303

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
           ++ + VV WTS+++AY  +    +A+ L+ +M   G+  D + +V+ L AC+  G L+EG
Sbjct: 304 IQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEG 363

Query: 420 RYY--------FKIMTEQYKLVP----------------RIEH------FACLVDLLGRA 449
           +          F+ +     L+                 R+        +  ++    +A
Sbjct: 364 KAIHSRVFECGFQSLVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQA 423

Query: 450 GKVEEAYDLIKQMPME---PNERIWGSLVAACCLYSNMDIGILAADHI--FHLAPNQSGY 504
           G  +EA +L  QM  E   PNE  + +++AAC    +++ G+    H+    LA N +  
Sbjct: 424 GHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQ 483

Query: 505 YVLLSNIYAKAG 516
             L++ +YAK G
Sbjct: 484 NALVT-MYAKCG 494


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 169/456 (37%), Positives = 259/456 (56%), Gaps = 6/456 (1%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VF+ + N NV  FN++I+  + N     A+  Y  M +    P+ +TYP + KAC+ + +
Sbjct: 86  VFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEA 145

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
              G+Q+H  V+K GL  ++   +  + MYG  G ++ ARR+L +  + DV+ +N+M+ G
Sbjct: 146 AEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDG 205

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           Y + G  + A ++   ME   +    + M S +          +   +E+F ++  KN +
Sbjct: 206 YLKCGEVEAAKELFWSMEDKNV-GSWNVMVSGMAKCGM-----IEEARELFNEMKEKNEI 259

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           SW+ MI  Y       EA++++  M+   I P    ++SVL AC +L AL  GR IH YV
Sbjct: 260 SWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYV 319

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
                  +  L  ALVDMYAKCG L  A  VF++M  ++V +W +MI   GM G+  DA+
Sbjct: 320 NNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAI 379

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
            LF KM      P+ I  + VLSAC+H+G+++EG   F  M E Y + P +EH+ C+VDL
Sbjct: 380 ELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDL 439

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           LGRAG + EA +++  MPMEP+  +WG+L+ AC  + ++++G      +  L P  SG Y
Sbjct: 440 LGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRY 499

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
            LLSNIYA+AGRW DV  VRK M  +G+K   G S+
Sbjct: 500 ALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISM 535


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 181/536 (33%), Positives = 292/536 (54%), Gaps = 36/536 (6%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +LH   ++      +  +G  L+  Y   G + + R VFD+++ K  V +  +I  Y   
Sbjct: 172 QLHG-FVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKC 230

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
                +L ++  M      PD Y    VL ACS    L  G QIH  V++ G + ++   
Sbjct: 231 GRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVV 290

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           N L+  Y KC  +K  R++ + M  K++++W +M++GY QN    EA+ +  EM  L  K
Sbjct: 291 NVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWK 350

Query: 229 PDADTMASLLPSVTN-------------------TSPENV--------------LSVKEM 255
           PD     S+L S  +                    S E V              +  K++
Sbjct: 351 PDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKV 410

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F  +  +N++S+N MI  Y++    +EA++L+ +M V   +PN  + A+++ A  +L++L
Sbjct: 411 FDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASL 470

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             G++ H  + +  L     + NALVDMYAKCGS+ EAR +F+    +DVV W SMIS +
Sbjct: 471 RHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTH 530

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
              G+  +A+ +F +M+  G+ P+ + FV+VLSACSHAG +E+G  +F  M   + + P 
Sbjct: 531 AQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMP-GFGIKPG 589

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
            EH+AC+V LLGR+GK+ EA + I++MP+EP   +W SL++AC +  N+++G  AA+   
Sbjct: 590 TEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAI 649

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
              P  SG Y+LLSNI+A  G W DVK+VR  M+S  + K PG S +E+N++V + 
Sbjct: 650 STDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVF 705



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 128/463 (27%), Positives = 232/463 (50%), Gaps = 45/463 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +H QII++  L S+  +   L+       ++ + R VFD++ +KN++ ++ ++  Y  
Sbjct: 69  KIIHGQIIVSG-LQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQ 127

Query: 108 NYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
                +AL V+ ++    G  P+ +    V++AC+    +  G Q+H  VV+ G D +++
Sbjct: 128 QGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVY 187

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
            G  L+  Y K G ++EAR V + +  K  VTW +++AGY + GR   +L++  +M    
Sbjct: 188 VGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETN 247

Query: 227 IKPDADTMASLLP---------------------------SVTN------TSPENVLSVK 253
           + PD   ++S+L                            SV N      T    V + +
Sbjct: 248 VVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGR 307

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
           ++F ++  KN++SW  MI+ Y  NS   EA+ L+ +M   G +P+  +  SVL +CG   
Sbjct: 308 KLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSRE 367

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           AL  GR++H Y  +  L+ +  ++N L+DMYAK   L +A+ VFD M  Q+V+S+ +MI 
Sbjct: 368 ALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIE 427

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-RYYFKIMTEQYKL 432
            Y    +  +A+ LF +M +    P+   F ++++A S+   L  G +++ +++      
Sbjct: 428 GYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDF 487

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
            P + +   LVD+  + G +EEA  +        N  IW  +V
Sbjct: 488 CPFVTN--ALVDMYAKCGSIEEARKMF-------NSSIWRDVV 521



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 204/447 (45%), Gaps = 71/447 (15%)

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           IH  ++  GL  + F  N L+ +  K   +  AR V + MP K+++TW+SMV+ Y+Q G 
Sbjct: 71  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 130

Query: 212 FDEALDVCREMESLRIK-PDADTMASLLPSVTN--------------------------- 243
            +EAL V  +++    + P+   +AS++ + T                            
Sbjct: 131 SEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGT 190

Query: 244 ------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297
                 +   N+   + +F +L  K  V+W  +IA Y      A +++L+ QM    + P
Sbjct: 191 SLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVP 250

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           +   V+SVL AC  L  L  G++IH YV R+  + ++ + N L+D Y KC  +   R +F
Sbjct: 251 DRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLF 310

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           DQM  ++++SWT+MIS Y  +   ++A+ LF +M   G  PD  A  SVL++C     LE
Sbjct: 311 DQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALE 370

Query: 418 EGR----YYFKIMTEQYKLVPR--IEHFA------------------------CLVDLLG 447
           +GR    Y  K   E  + V    I+ +A                         +++   
Sbjct: 371 QGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYS 430

Query: 448 RAGKVEEAYDLIKQMPM---EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY 504
              K+ EA +L  +M +   +PNE  + +L+ A    +++  G    + +  +  +   +
Sbjct: 431 SQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPF 490

Query: 505 YV-LLSNIYAKAGRWGDVKRVRKFMNS 530
               L ++YAK    G ++  RK  NS
Sbjct: 491 VTNALVDMYAKC---GSIEEARKMFNS 514



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 90/189 (47%), Gaps = 3/189 (1%)

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           +++  + P     A++L      + ++  + IH  +    LQ +  L N L+++ +K   
Sbjct: 40  LQIPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDR 99

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM-SGLCPDSIAFVSVLS 408
           +  AR VFD+M  +++++W+SM+S Y   G   +A+ +F  +   SG  P+     SV+ 
Sbjct: 100 VDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIR 159

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
           AC+  G++E+G      +         +     L+D   + G +EEA  +  Q+  E   
Sbjct: 160 ACTQLGVVEKGAQLHGFVVRS-GFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLS-EKTA 217

Query: 469 RIWGSLVAA 477
             W +++A 
Sbjct: 218 VTWTTIIAG 226


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 180/544 (33%), Positives = 293/544 (53%), Gaps = 37/544 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK---NVVFFN 99
           D + L +LHA +I +  L  +P     L+    A   ++        +  +   +   +N
Sbjct: 28  DPRYLPQLHAALIKSGELTGSPKCFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYN 87

Query: 100 VLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
           VL+R+ ++     DALH++  M  V    PD +T  C LK+CS   +L VG  I    VK
Sbjct: 88  VLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVK 147

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
            GL  + F  + L+ MY  C  +  A+ + + +    VV WN+++  Y +NG + E +++
Sbjct: 148 RGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEM 207

Query: 219 CREMESLRIKPDADTMASLLPS----------------------VTNTSPENVL------ 250
            + M  + +  D  T+ S++ +                      V N +    L      
Sbjct: 208 FKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAK 267

Query: 251 -----SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                  + +F  + ++++V+W+ MI+ Y       EA+ L+ +M++  +EPN +++ SV
Sbjct: 268 CGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSV 327

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L AC  L AL  G+ +H Y+ RK+L   + L  ALVD YAKCG + +A   F+ M  ++ 
Sbjct: 328 LSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNS 387

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
            +WT++I     +G+G +A+ LFS M  + + P  + F+ VL ACSH+ L+EEGR +F  
Sbjct: 388 WTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDS 447

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           MT+ Y + PR EH+ C+VDLLGRAG ++EAY  I+ MP+EPN  IW +L+++C ++ N++
Sbjct: 448 MTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVE 507

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMND 545
           IG  A   I  L P+ SG Y+LLSNIYA  G+W +   +RK M  +GI+K PG S+   D
Sbjct: 508 IGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELD 567

Query: 546 QVQI 549
            V +
Sbjct: 568 GVVV 571


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 176/539 (32%), Positives = 286/539 (53%), Gaps = 37/539 (6%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           P     +++H  ++ N   H +  +   L+  Y   G +   R +FD+I NK+VV ++ +
Sbjct: 138 PSFLLGQEVHGFVVKNG-FHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTM 196

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           IRSY  + L  +AL + ++M V    P       +    +    L +G  +H  V++ G 
Sbjct: 197 IRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGK 256

Query: 162 --DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
                +     L+ MY KC  L  ARRV + +    +++W +M+A Y      +E + + 
Sbjct: 257 CGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLF 316

Query: 220 REMESLRIKPDADTMASLLPSVTNTSP--------------------------------- 246
            +M    + P+  TM SL+                                         
Sbjct: 317 VKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKC 376

Query: 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
            +V S + +F    +K+L+ W+ MI+ YA N+   EA D+++ M   GI PN  ++ S+L
Sbjct: 377 GDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLL 436

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
             C    +L +G+ IH Y++++ ++ ++ L+ + VDMYA CG +  A  +F +   +D+ 
Sbjct: 437 MICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDIS 496

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
            W +MIS + M G G  A+ LF +M   G+ P+ I F+  L ACSH+GLL+EG+  F  M
Sbjct: 497 MWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKM 556

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
             ++   P++EH+ C+VDLLGRAG ++EA++LIK MPM PN  ++GS +AAC L+ N+ +
Sbjct: 557 VHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKL 616

Query: 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMN 544
           G  AA     L P++SGY VL+SNIYA A RWGDV  +R+ M  +GI K PG +S+E+N
Sbjct: 617 GEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVN 675



 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 132/471 (28%), Positives = 226/471 (47%), Gaps = 45/471 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LH  +   Q LH +       ++T   C   V    +  E  + N    + LI SY+ 
Sbjct: 50  QELHINLNETQQLHGH------FIKTSSNCSYRVPLAAL--ESYSSNAAIHSFLITSYIK 101

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    DA  +Y  M     + D +  P VLKAC    S L+G ++H  VVK G   ++F 
Sbjct: 102 NNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFV 161

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY + G L  AR + + + +KDVV+W++M+  Y ++G  DEALD+ R+M  +R+
Sbjct: 162 CNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRV 221

Query: 228 KPDADTMASLLPSVTNTSP-----------------------------------ENVLSV 252
           KP    M S+   +   +                                    EN+   
Sbjct: 222 KPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYA 281

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           + +F  L   +++SW  MIA Y + +   E V L+++M   G+ PN I++ S++  CG  
Sbjct: 282 RRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTA 341

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
            AL LG+ +H +  R     +L L  A +DMY KCG +  AR+VFD  + +D++ W++MI
Sbjct: 342 GALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMI 401

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           S+Y  +    +A  +F  M   G+ P+    VS+L  C+ AG LE G++    + +Q   
Sbjct: 402 SSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIK 461

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
              I   +  VD+    G ++ A+ L  +   + +  +W ++++   ++ +
Sbjct: 462 GDMILKTS-FVDMYANCGDIDTAHRLFAE-ATDRDISMWNAMISGFAMHGH 510



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 163/359 (45%), Gaps = 35/359 (9%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHL-HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNV 95
           +L +  D+K  K +HA ++ N     S   +   L+  Y  C  +   R VFD ++  ++
Sbjct: 234 VLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASI 293

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
           + +  +I +Y++     + + ++  M   G  P+  T   ++K C  + +L +G  +H  
Sbjct: 294 ISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAF 353

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
            ++ G   +L      + MYGKCG ++ AR V +   SKD++ W++M++ YAQN   DEA
Sbjct: 354 TLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEA 413

Query: 216 LDVCREMESLRIKPDADTMASLL--------------------------PSVTNTS---- 245
            D+   M    I+P+  TM SLL                            +  TS    
Sbjct: 414 FDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDM 473

Query: 246 ---PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
                ++ +   +F +  ++++  WN MI+ +A +     A++L+ +ME  G+ PN I+ 
Sbjct: 474 YANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITF 533

Query: 303 ASVLPACGDLSALLLGRKI-HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
              L AC     L  G+++ H+ V      P +     +VD+  + G L EA  +   M
Sbjct: 534 IGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSM 592


>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
 gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
          Length = 528

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 176/517 (34%), Positives = 278/517 (53%), Gaps = 40/517 (7%)

Query: 34  CNDILDKYPDIKTLKKLHAQIIINQHLHSNP-SIGLKLMRTYGACGQMVDTRHVFDEITN 92
           C+ +L +   ++ L+++HA + I   LH +  S+  K+ R Y   G++ D R +FDEI N
Sbjct: 17  CHHLLAQCKKLRELQRIHA-LAIAHGLHPHQQSVSCKIFRCYADFGRVADARKLFDEIPN 75

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
            +++ F  L+  ++      +A+ ++  +   G  PD +     L A SG+   +VG  +
Sbjct: 76  PDLISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAVVGALSASSGAGDQVVGRAV 135

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  + ++GLD  +  GN L+ MY +CG  + A +V + M  KD VTW SM+ GY +    
Sbjct: 136 HGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGYIKCAGV 195

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIA 272
           D AL                                       F ++  +++V+W  +I 
Sbjct: 196 DSAL-------------------------------------SFFDQVPVRSVVAWTALIT 218

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            +     P  A++L+ +M + G  P  +++  VL AC D+ AL LGR IH Y  +     
Sbjct: 219 GHVQGRQPVRALELFGRMVLEGHRPTHVTIVGVLSACADIGALDLGRVIHGYGSKCNASL 278

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           N+ + NAL+DMYAK G +  A +VF +++ +D  +WT+MIS   + G G  A+ LF  ML
Sbjct: 279 NIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKALELFQDML 338

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
            +G+ P+S+ FVSVLSACSH+GL+EEG   F  M + YK+ P +EH+ C++DLLGR G +
Sbjct: 339 RAGVVPNSVTFVSVLSACSHSGLIEEGIELFDRMRQLYKIDPLLEHYGCMIDLLGRGGLL 398

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
           EEA  LI  M +EP+  IW SL++AC +  N  +  +A   I    P   G YVLL N+Y
Sbjct: 399 EEAEALIADMNVEPDIVIWRSLLSACLVRGNNRLAEIAGKEIVKREPGDDGVYVLLWNMY 458

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           A + +W + + +R+ M S  I K PG S +E++  V 
Sbjct: 459 ASSNKWREAREMRQQMLSLKIFKKPGCSWIEIDGAVH 495


>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
          Length = 548

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 176/482 (36%), Positives = 263/482 (54%), Gaps = 25/482 (5%)

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
           R VF+ I   +V  +N +IR Y N+     AL  Y+ M   G+ PD +T+P VLKACSG 
Sbjct: 61  RSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGL 120

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
             +  G  +H  VVK G + N++    L+ MY  CG +    RV  D+P  +VV W S++
Sbjct: 121 RDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLI 180

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLL--------PSVTNTSPENVL----- 250
           +G+  N RF +A++  REM+S  +K +   M  LL        P   +    NV+     
Sbjct: 181 SGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCFDPYFQSKVGFNVILATSL 240

Query: 251 -----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                      + + +F  +  + LVSWN +I  Y+ N    EA+ ++L M   GI P+ 
Sbjct: 241 IDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDK 300

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           ++  SV+ A        LG+ IH YV +     +  +  ALV+MYAK G    A+  F+ 
Sbjct: 301 VTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFED 360

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG-LCPDSIAFVSVLSACSHAGLLEE 418
           +  +D ++WT +I      G G +A+++F +M   G   PD I ++ VL ACSH GL+EE
Sbjct: 361 LEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEE 420

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           G+ YF  M + + L P +EH+ C+VD+L RAG+ EEA  L+K MP++PN  IWG+L+  C
Sbjct: 421 GQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNGC 480

Query: 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
            ++ N+++       +       SG YVLLSNIYAKAGRW DVK +R+ M SK + K+ G
Sbjct: 481 DIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSKRVDKVLG 540

Query: 539 AS 540
            S
Sbjct: 541 HS 542



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 171/378 (45%), Gaps = 66/378 (17%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           DI+    +H   ++      N  +   L+  Y  CG++     VF++I   NVV +  LI
Sbjct: 122 DIQFGSCVHG-FVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLI 180

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV----- 157
             +VNN  + DA+  ++ M  +G           +KA   + +++V L + C        
Sbjct: 181 SGFVNNNRFSDAIEAFREMQSNG-----------VKA---NETIMVDLLVACGRCFDPYF 226

Query: 158 --KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
             KVG  +N+     L+ MY KCG L+ AR + + MP + +V+WNS++ GY+QNG  +EA
Sbjct: 227 QSKVG--FNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEA 284

Query: 216 LDVCREMESLRIKPDADTMASLLPS----------------VTNTS-------------- 245
           L +  +M  L I PD  T  S++ +                V+ T               
Sbjct: 285 LCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNM 344

Query: 246 ---PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAIS 301
                +  S K+ F  L+ K+ ++W V+I   A++    EA+ ++ +M+  G   P+ I+
Sbjct: 345 YAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGIT 404

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKK----LQPNLRLENALVDMYAKCGSLTEARTVF 357
              VL AC  +  +  G+   RY    +    L+P +     +VD+ ++ G   EA  + 
Sbjct: 405 YLGVLYACSHIGLVEEGQ---RYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLV 461

Query: 358 DQMRCQ-DVVSWTSMISA 374
             M  + +V  W ++++ 
Sbjct: 462 KTMPVKPNVNIWGALLNG 479



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 135/304 (44%), Gaps = 29/304 (9%)

Query: 236 SLLPSVTNTSPE--NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
           S L     T PE  N+   + +F  +D  ++  WN MI  Y+N+  P +A+  Y +M   
Sbjct: 42  SRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRK 101

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
           G  P+  +   VL AC  L  +  G  +H +V +   + N+ +   L+ MY  CG +   
Sbjct: 102 GYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYG 161

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
             VF+ +   +VV+W S+IS +  + +  DA+  F +M  +G+  +    V +L AC   
Sbjct: 162 LRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVAC--- 218

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
                GR +      Q K+   +     L+D+  + G +  A  L   MP E     W S
Sbjct: 219 -----GRCFDPYF--QSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMP-ERTLVSWNS 270

Query: 474 LVA----------ACCLYSNM-DIGILAADHIFHL----APNQSGYYVLLSNIYAKAGRW 518
           ++           A C++ +M D+GI A D +  L    A    G   L  +I+A   + 
Sbjct: 271 IITGYSQNGDAEEALCMFLDMLDLGI-APDKVTFLSVIRASMIQGCSQLGQSIHAYVSKT 329

Query: 519 GDVK 522
           G VK
Sbjct: 330 GFVK 333



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 133/308 (43%), Gaps = 10/308 (3%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           N  +   L+  Y  CG +   R++FD +  + +V +N +I  Y  N    +AL ++ +M 
Sbjct: 233 NVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDML 292

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
             G  PD  T+  V++A        +G  IH  V K G   +      LV MY K G  +
Sbjct: 293 DLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAE 352

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPDADTMASLLPSV 241
            A++   D+  KD + W  ++ G A +G  +EAL + + M E     PD  T   +L + 
Sbjct: 353 SAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYAC 412

Query: 242 TNTS--PENVLSVKEMF-LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
           ++     E      EM  L      +  +  M+ + +      EA  L   M V   +PN
Sbjct: 413 SHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPV---KPN 469

Query: 299 AISVASVLPACGDLSALLLGRKIHRYV-ERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
                ++L  C     L L  +I   V E ++L   + +   L ++YAK G   + + + 
Sbjct: 470 VNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYV--LLSNIYAKAGRWADVKLIR 527

Query: 358 DQMRCQDV 365
           + M+ + V
Sbjct: 528 ESMKSKRV 535


>gi|359492597|ref|XP_002282781.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g04860-like [Vitis vinifera]
          Length = 724

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 185/563 (32%), Positives = 292/563 (51%), Gaps = 46/563 (8%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           PDI    K      I   L  +  +   L   Y  C  +     +F+EI  K  V +N +
Sbjct: 167 PDIIFQGKAIHGFGIKSGLDLDCRVKNALTSMYAKCADLQAAEVLFEEIFEKTEVSWNTM 226

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           I +Y  N L+ +A+ V+K M     + +  T   +L A +  +S       HC V+K G 
Sbjct: 227 IGAYGQNGLFDEAMLVFKQMQKERVEVNYVTIISLLSANAHLDS------THCYVIKTGF 280

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             +      LV  Y  CG ++ A  + N MP +++V+  +M++GYA+ G     ++   +
Sbjct: 281 ATDASVITSLVCSYAGCGNIESAGLLYNLMPQRNLVSLTAMISGYAEKGNMGLVVECFTQ 340

Query: 222 MESLRIKPDADTMASLLPSVTN---------------------------------TSPEN 248
           M  L++KPDA  M S+L   T+                                 +   +
Sbjct: 341 MLQLKMKPDAVAMVSILHGFTDPTFIGSGLGIHAYGLKTGLCADCLVVNGLISMYSKFGD 400

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           + +V  +F ++  K L+SWN +I+        ++A++L+ QM ++G  P+AI++AS+L  
Sbjct: 401 IETVFSLFSEMGEKQLISWNSVISACIQVGRTSDAMELFCQMRMYGHSPDAITIASLLAG 460

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C ++  L  G ++H YV R  L     LE ALVDMY KCG L  A  VF  ++   + +W
Sbjct: 461 CSEVGFLQFGERLHNYVLRNNLDMEDFLETALVDMYIKCGRLESAERVFKSIKEPCLATW 520

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            +MIS YG+SG  + A++ +S+M   GL PD I F+ VLSAC+H GL+ EG+ YF+ M E
Sbjct: 521 NTMISGYGLSGHEHRALSCYSEMQEQGLKPDRITFLGVLSACTHGGLVWEGKRYFRSMRE 580

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
            + ++P ++H AC+VDLL RAG +EEA   +K M +EP+  IWG+L+ +CC++  + +G 
Sbjct: 581 DFGMIPGLQHNACMVDLLSRAGFLEEAVIFVKNMEVEPDSAIWGALLTSCCIHQELKLGE 640

Query: 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM------NSKGIKKMPGASVE 542
             A  +  L     G YVL+SN+YA  GRW DV RVRK M       S GI  +  +S+E
Sbjct: 641 CLAKRLLLLDYYSGGLYVLMSNLYASKGRWDDVARVRKMMKDTGGDGSSGISLIEVSSLE 700

Query: 543 -MNDQVQIIALPLRSSKCLTTGP 564
            MN+ + +  L L ++    + P
Sbjct: 701 KMNNSLCLSDLSLNTNYWQLSSP 723



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 126/432 (29%), Positives = 211/432 (48%), Gaps = 31/432 (7%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           YG  G +   +H+F+E+  ++VV +N LI  Y  N   YDAL V+  M   GF P   T 
Sbjct: 98  YGKLGCIYYAQHLFEEMPRRDVVSWNALICGYSRNGYDYDALEVFVQMLREGFPPCQRTL 157

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             ++ +C   + +  G  IH   +K GLD +    N L +MY KC  L+ A  +  ++  
Sbjct: 158 VGLVPSCGRPDIIFQGKAIHGFGIKSGLDLDCRVKNALTSMYAKCADLQAAEVLFEEIFE 217

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK 253
           K  V+WN+M+  Y QNG FDEA+ V ++M+  R++ +  T+ SLL +  +    +   +K
Sbjct: 218 KTEVSWNTMIGAYGQNGLFDEAMLVFKQMQKERVEVNYVTIISLLSANAHLDSTHCYVIK 277

Query: 254 EMFLK---------------------------LDNKNLVSWNVMIAVYANNSMPAEAVDL 286
             F                             +  +NLVS   MI+ YA        V+ 
Sbjct: 278 TGFATDASVITSLVCSYAGCGNIESAGLLYNLMPQRNLVSLTAMISGYAEKGNMGLVVEC 337

Query: 287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
           + QM    ++P+A+++ S+L    D + +  G  IH Y  +  L  +  + N L+ MY+K
Sbjct: 338 FTQMLQLKMKPDAVAMVSILHGFTDPTFIGSGLGIHAYGLKTGLCADCLVVNGLISMYSK 397

Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
            G +    ++F +M  + ++SW S+ISA    G+  DA+ LF +M M G  PD+I   S+
Sbjct: 398 FGDIETVFSLFSEMGEKQLISWNSVISACIQVGRTSDAMELFCQMRMYGHSPDAITIASL 457

Query: 407 LSACSHAGLLEEG-RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME 465
           L+ CS  G L+ G R +  ++     +   +E    LVD+  + G++E A  + K +  E
Sbjct: 458 LAGCSEVGFLQFGERLHNYVLRNNLDMEDFLE--TALVDMYIKCGRLESAERVFKSIK-E 514

Query: 466 PNERIWGSLVAA 477
           P    W ++++ 
Sbjct: 515 PCLATWNTMISG 526



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 170/371 (45%), Gaps = 45/371 (12%)

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
           +N+ +   QI   + K G +  ++     +  YGK GC+  A+ +  +MP +DVV+WN++
Sbjct: 66  ANTKIEANQIQTHLRKSGFNQYVYLTTAFLDFYGKLGCIYYAQHLFEEMPRRDVVSWNAL 125

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT-------------------- 242
           + GY++NG   +AL+V  +M      P   T+  L+PS                      
Sbjct: 126 ICGYSRNGYDYDALEVFVQMLREGFPPCQRTLVGLVPSCGRPDIIFQGKAIHGFGIKSGL 185

Query: 243 --NTSPENVLS-----------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
             +   +N L+            + +F ++  K  VSWN MI  Y  N +  EA+ ++ Q
Sbjct: 186 DLDCRVKNALTSMYAKCADLQAAEVLFEEIFEKTEVSWNTMIGAYGQNGLFDEAMLVFKQ 245

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M+   +E N +++ S+L A   L +       H YV +     +  +  +LV  YA CG+
Sbjct: 246 MQKERVEVNYVTIISLLSANAHLDS------THCYVIKTGFATDASVITSLVCSYAGCGN 299

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           +  A  +++ M  +++VS T+MIS Y   G     V  F++ML   + PD++A VS+L  
Sbjct: 300 IESAGLLYNLMPQRNLVSLTAMISGYAEKGNMGLVVECFTQMLQLKMKPDAVAMVSILHG 359

Query: 410 CSHAGLLEEGR--YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
            +    +  G   + + + T    L         L+ +  + G +E  + L  +M  E  
Sbjct: 360 FTDPTFIGSGLGIHAYGLKT---GLCADCLVVNGLISMYSKFGDIETVFSLFSEMG-EKQ 415

Query: 468 ERIWGSLVAAC 478
              W S+++AC
Sbjct: 416 LISWNSVISAC 426



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 83/169 (49%), Gaps = 6/169 (3%)

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           D +  +   +I  ++ +      + L  A +D Y K G +  A+ +F++M  +DVVSW +
Sbjct: 65  DANTKIEANQIQTHLRKSGFNQYVYLTTAFLDFYGKLGCIYYAQHLFEEMPRRDVVSWNA 124

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR--YYFKIMTE 428
           +I  Y  +G  YDA+ +F +ML  G  P     V ++ +C    ++ +G+  + F I + 
Sbjct: 125 LICGYSRNGYDYDALEVFVQMLREGFPPCQRTLVGLVPSCGRPDIIFQGKAIHGFGIKS- 183

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
              L  R+++   L  +  +   ++ A  L +++  E  E  W +++ A
Sbjct: 184 GLDLDCRVKN--ALTSMYAKCADLQAAEVLFEEI-FEKTEVSWNTMIGA 229


>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
          Length = 446

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 168/438 (38%), Positives = 252/438 (57%), Gaps = 45/438 (10%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCG 179
           M   GF PD  T   V+ AC+G  +   G Q+H  +VK   L  ++   N LV MY KCG
Sbjct: 1   MMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 60

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
              EAR + + MPS+ VV+  S++AGYA++                              
Sbjct: 61  RTWEARCIFDSMPSRSVVSETSILAGYAKSA----------------------------- 91

Query: 240 SVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                   NV   + +F ++  KN+++WNV+IA YA N    EA+ L++Q++   I P  
Sbjct: 92  --------NVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTH 143

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE------NALVDMYAKCGSLTEA 353
            +  +VL ACG+++ L LG++ H +V ++  + +   E      N+LVDMY K GS+ + 
Sbjct: 144 YTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDG 203

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
             VF++M  +D VSW +MI  Y  +G+  DA+ LF +ML S   PDS+  + VLSAC H+
Sbjct: 204 AKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHS 263

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           GL++EGR +F  MTE + + P  +H+ C+VDLLGRAG ++EA +LIK MP EP+  +W S
Sbjct: 264 GLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWAS 323

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           L+ AC L+ N+++G   A  +F L P  SG YVLLSN+YA+ G+W DV RVR+ M  +G+
Sbjct: 324 LLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGV 383

Query: 534 KKMPGAS-VEMNDQVQII 550
            K PG S +E+  ++ + 
Sbjct: 384 SKQPGCSWIEIGSKMNVF 401



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 143/311 (45%), Gaps = 25/311 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y     + D + VF ++  KNV+ +NVLI +Y  N    +A+ ++  +      P 
Sbjct: 83  ILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPT 142

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL------FNGNGLVAMYGKCGCLKE 183
            YTY  VL AC     L +G Q H  V+K G  ++       F GN LV MY K G + +
Sbjct: 143 HYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDD 202

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
             +V   M ++D V+WN+M+ GYAQNGR  +AL +   M      PD+ TM  +L +  +
Sbjct: 203 GAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGH 262

Query: 244 TSPENVLSVKEMFLKLDNKNLVS---WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
           +   +       F+  D+    S   +  M+ +        EA +L   M     EP+++
Sbjct: 263 SGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPT---EPDSV 319

Query: 301 SVASVLPACGDLSALLLG-RKIHRYVERKKLQPNLRLENA-----LVDMYAKCGSLTEAR 354
             AS+L AC     + LG R   R  E   L P    EN+     L +MYA+ G   +  
Sbjct: 320 LWASLLGACRLHKNVELGERTAGRLFE---LDP----ENSGPYVLLSNMYAEMGKWADVF 372

Query: 355 TVFDQMRCQDV 365
            V   M+ + V
Sbjct: 373 RVRRSMKDRGV 383



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 2/145 (1%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S+  +G  L+  Y   G + D   VF+ +  ++ V +N +I  Y  N    DALH+++ M
Sbjct: 182 SDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERM 241

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQ-IHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
                +PD  T   VL AC  S  +  G +  H      G+  +  +   +V + G+ G 
Sbjct: 242 LCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGH 301

Query: 181 LKEARRVLNDMPSK-DVVTWNSMVA 204
           LKEA  ++ DMP++ D V W S++ 
Sbjct: 302 LKEAEELIKDMPTEPDSVLWASLLG 326


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 181/509 (35%), Positives = 279/509 (54%), Gaps = 34/509 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y   G + D R VFD +  KN V +N L+ +YV N    +A  ++ +         
Sbjct: 158 ILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWAL--- 214

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             ++ C+L        ++   Q   S+ KV    ++ + N ++  Y + G + EAR++ +
Sbjct: 215 -VSWNCLLGGFVKKKKIVEARQFFDSM-KV---RDVVSWNTIITGYAQNGEIDEARQLFD 269

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR-----------IKPDADTMASLL 238
           + P  DV TW +MV+GY QN   +EA ++   M               ++ +   MA  L
Sbjct: 270 ESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKEL 329

Query: 239 PSV---TNTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAV 284
             V    N S  N +             K +F K+  ++ VSW  MIA Y+ +    EA+
Sbjct: 330 FDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEAL 389

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMY 344
            L++ ME  G   N  S +S L  C D+ AL LG+++H  + +   +    + NAL+ MY
Sbjct: 390 RLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMY 449

Query: 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404
            KCGS+ EA  +F +M  +D+VSW +MI+ Y   G G +A+  F  M   GL PD    V
Sbjct: 450 CKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMV 509

Query: 405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM 464
           +VLSACSH GL+++GR YF  MT+ Y + P  +H+AC+VDLLGRAG +EEA++L+K MP 
Sbjct: 510 AVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPF 569

Query: 465 EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV 524
           EP+  IWG+L+ A  ++ N ++   AAD IF + P  SG YVLLSN+YA +GRWGDV ++
Sbjct: 570 EPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKL 629

Query: 525 RKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
           R  M  KG+KK+PG S +E+ ++    ++
Sbjct: 630 RVRMRDKGVKKVPGYSWIEIQNKTHTFSV 658



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 184/413 (44%), Gaps = 79/413 (19%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G+    R +FDE+  +++V +NV+I+ YV N     A  +++ M      P+        
Sbjct: 104 GEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERM------PE-------R 150

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
             CS  N++L G                         Y + GC+ +ARRV + MP K+ V
Sbjct: 151 DVCSW-NTILSG-------------------------YAQNGCVDDARRVFDRMPEKNDV 184

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
           +WN++++ Y QN + +EA  +    E+  +     +   LL        + ++  ++ F 
Sbjct: 185 SWNALLSAYVQNSKLEEACVLFGSRENWALV----SWNCLLGGF--VKKKKIVEARQFFD 238

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI---------------EPNAISV 302
            +  +++VSWN +I  YA N    EA  L+ +  VH +                  A  +
Sbjct: 239 SMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEAREL 298

Query: 303 ASVLPACGDLS--ALLLGRKIHRYVERKK----LQP--NLRLENALVDMYAKCGSLTEAR 354
              +P   ++S  A+L G      VE  K    + P  N+   N ++  YA+CG ++EA+
Sbjct: 299 FDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAK 358

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            +FD+M  +D VSW +MI+ Y  SG  Y+A+ LF  M   G   +  +F S LS C+   
Sbjct: 359 NLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVV 418

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVD-----LLGRAGKVEEAYDLIKQM 462
            LE G+          +LV       C V      +  + G +EEA DL K+M
Sbjct: 419 ALELGKQL------HGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEM 465



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 156/343 (45%), Gaps = 47/343 (13%)

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           D ++   N  ++ Y + G   EA RV   MP    V++N+M++GY +NG F+ A  +  E
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
           M      P+ D ++  +         N+   +E+F ++  +++ SWN +++ YA N    
Sbjct: 116 M------PERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVD 169

Query: 282 EAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
           +A  ++ +M E + +  NA+  A V  +  + + +L G          +    L   N L
Sbjct: 170 DARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFG---------SRENWALVSWNCL 220

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +  + K   + EAR  FD M+ +DVVSW ++I+ Y  +G+  +A  LF +  +     D 
Sbjct: 221 LGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVH----DV 276

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQ-----------YKLVPRIEHFACLVDLL--- 446
             + +++S      ++EE R  F  M E+           Y    R+E    L D++   
Sbjct: 277 FTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCR 336

Query: 447 ------------GRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
                        + GK+ EA +L  +MP + +   W +++A 
Sbjct: 337 NVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 378


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 175/466 (37%), Positives = 264/466 (56%), Gaps = 44/466 (9%)

Query: 113 DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV 172
           DAL  +  M       D +TY  ++KA S +    V   +H  VVK+G   + F GN L+
Sbjct: 116 DALAAFSAMPRR----DSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALI 170

Query: 173 AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
             Y K G   +AR+V ++MP +DVV+WN+ +A   + G       +  EM      P+ D
Sbjct: 171 DAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM------PEKD 224

Query: 233 TMA--SLLPSVTNTS------------PE-NVLSVKEM----------------FLKLDN 261
           T++  ++L   T               PE NV+S   M                F K+ +
Sbjct: 225 TVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPS 284

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           KNLV+W +M++  A   +  EA  L+ QM+   +E +  +V S+L AC +  +L LG++I
Sbjct: 285 KNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRI 344

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQ 380
           HRYV ++ L  +  + NAL+DM+ KCG +  A  VFD    Q D VSW S+I  + M G 
Sbjct: 345 HRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGH 404

Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA 440
           G  A+ LF++M   G  PD++  ++VLSAC+H G ++EGR +F  M   Y ++P+IEH+ 
Sbjct: 405 GDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYG 464

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500
           C++DLLGR G ++EA DLIK MP EPNE IWGSL++AC L+ N++   +A + +  L P+
Sbjct: 465 CMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPS 524

Query: 501 QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMND 545
            +G Y +LSNIYA+AG+W D+ + R  M   G +K  G+S VE+N+
Sbjct: 525 NAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNE 570



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 155/344 (45%), Gaps = 36/344 (10%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGAC--GQMVDTRHVFDEITN 92
           N ILD Y       ++ A   + Q +     +    M   G C  G +   R +FD++ +
Sbjct: 229 NTILDGY---TKAGEVEAAFELFQRMPERNVVSWSTM-VSGYCKKGDLEMARVIFDKMPS 284

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           KN+V + +++ +     L  +A  ++  M     + D      +L AC+ S SL +G +I
Sbjct: 285 KNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRI 344

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN-DMPSKDVVTWNSMVAGYAQNGR 211
           H  V K  L  +    N L+ M+ KCGC+  A  V + +   KD V+WNS++ G+A +G 
Sbjct: 345 HRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGH 404

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLVS 266
            D+AL++  +M+     PDA TM ++L + T+     V   +  F  ++        +  
Sbjct: 405 GDKALELFAQMKQQGFNPDAVTMINVLSACTHMG--FVDEGRRHFSNMERDYGIMPQIEH 462

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           +  MI +     +  EAVDL   M     EPN +   S+L AC          ++H+ VE
Sbjct: 463 YGCMIDLLGRGGLIKEAVDLIKSMP---WEPNEVIWGSLLSAC----------RLHKNVE 509

Query: 327 R--------KKLQP-NLRLENALVDMYAKCGSLTEARTVFDQMR 361
                     KLQP N      L ++YA+ G  ++      QM+
Sbjct: 510 YAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMK 553



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 155/345 (44%), Gaps = 44/345 (12%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y   G   D R VFDE+  ++VV +N  + + V          ++  M    
Sbjct: 165 VGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMP--- 221

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            + D  ++  +L   + +  +    ++   +     + N+ + + +V+ Y K G L+ AR
Sbjct: 222 -EKDTVSWNTILDGYTKAGEVEAAFELFQRMP----ERNVVSWSTMVSGYCKKGDLEMAR 276

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT- 244
            + + MPSK++VTW  MV+  AQ G  DEA  +  +M+   ++ D   + S+L +   + 
Sbjct: 277 VIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESG 336

Query: 245 -------------------SPENVLSVKEMFLKLD--------------NKNLVSWNVMI 271
                              S     ++ +MF K                 K+ VSWN +I
Sbjct: 337 SLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSII 396

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KL 330
             +A +    +A++L+ QM+  G  P+A+++ +VL AC  +  +  GR+    +ER   +
Sbjct: 397 GGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGI 456

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
            P +     ++D+  + G + EA  +   M  + + V W S++SA
Sbjct: 457 MPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSA 501


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 175/506 (34%), Positives = 281/506 (55%), Gaps = 68/506 (13%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNK-----------------------------------N 94
           L   Y  CG+M D R VFD ++ K                                   N
Sbjct: 157 LFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPN 216

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
           +V +N ++  +  +  + +A+ +++ M   GF PD  T   VL +   S +L +G QIH 
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHG 276

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            V+K GL  +    + ++ MYGK G +    ++ ++    +    N+ + G ++NG  D+
Sbjct: 277 YVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDK 336

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
           AL    EM  L                           KE  ++L   N+VSW  +IA  
Sbjct: 337 AL----EMFGL--------------------------FKEQKMEL---NVVSWTSIIAGC 363

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           A N    EA++L+ +M+V G++PN +++ S+LPACG+++AL  GR  H +  R  L  ++
Sbjct: 364 AQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDV 423

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + +AL+DMYAKCG +  ++ VF+ M  +++V W S+++ Y M G+  + +++F  ++ +
Sbjct: 424 HVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRT 483

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
            L PD I+F S+LSAC   GL +EG  YF +M+E+Y + PR+EH++C+V+LLGRAGK++E
Sbjct: 484 RLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQE 543

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           AYDLIK++P EP+  +WG+L+ +C L +N+D+  +AA  +FHL P   G YVL+SNIYA 
Sbjct: 544 AYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAA 603

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS 540
            G W +V  +R  M S G+KK PG S
Sbjct: 604 KGMWTEVDSIRNKMESLGLKKNPGCS 629



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 210/460 (45%), Gaps = 71/460 (15%)

Query: 51  HAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYL 110
           HA+I+      ++  I  KL+ +Y       D   +   I +  V  F+ LI +     L
Sbjct: 38  HARIL-KSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKL 96

Query: 111 YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG 170
           +  ++ V+  M  HG  PD +  P + K C+  ++   G QIHC     GLD + F    
Sbjct: 97  FSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGS 156

Query: 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
           L  MY +CG + +AR+V + M  KDVVT ++++ GYA+ G  +E + +  EME   I+P 
Sbjct: 157 LFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEP- 215

Query: 231 ADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
                                           N+VSWN +++ +  +    EAV ++ +M
Sbjct: 216 --------------------------------NIVSWNGILSGFNRSGYHKEAVIMFQKM 243

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
              G  P+ ++V+SVLP+ GD   L +GR+IH YV ++ L  +  + +A++DMY K G +
Sbjct: 244 HHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHV 303

Query: 351 TEARTVFDQMRCQD-----------------------------------VVSWTSMISAY 375
                +FD+    +                                   VVSWTS+I+  
Sbjct: 304 YGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGC 363

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
             +G+  +A+ LF +M ++G+ P+ +   S+L AC +   L  GR         + L+  
Sbjct: 364 AQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVH-LLDD 422

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
           +   + L+D+  + G+++ +  +   MP + N   W SL+
Sbjct: 423 VHVGSALIDMYAKCGRIKMSQIVFNMMPTK-NLVCWNSLM 461



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/247 (20%), Positives = 103/247 (41%), Gaps = 46/247 (18%)

Query: 59  HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVY 118
           HL  +  +G  L+  Y  CG++  ++ VF+ +  KN+V +N L+  Y  +    + + ++
Sbjct: 418 HLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIF 477

Query: 119 KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC 178
           +++      PD  ++  +L AC                                   G+ 
Sbjct: 478 ESLMRTRLKPDFISFTSLLSAC-----------------------------------GQV 502

Query: 179 GCLKEARRVLNDMPSKDVVT-----WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           G   E  +  N M  +  +      ++ MV    + G+  EA D+ +E+     +PD+  
Sbjct: 503 GLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIP---FEPDSCV 559

Query: 234 MASLLPS--VTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
             +LL S  + N      ++ +++F  L+ +N  ++ +M  +YA   M  E   +  +ME
Sbjct: 560 WGALLNSCRLQNNVDLAEIAAQKLF-HLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKME 618

Query: 292 VHGIEPN 298
             G++ N
Sbjct: 619 SLGLKKN 625


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 175/509 (34%), Positives = 288/509 (56%), Gaps = 44/509 (8%)

Query: 86  VFDEITNKNVVF-FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
           +F+   +K  VF +N +I     +    +AL  + +M      P   ++PC +KACS   
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
            +  G Q H      G   ++F  + L+ MY  CG L++AR+V +++P +++V+W SM+ 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150

Query: 205 GYAQNGRFDEALDVCREM-------------------------------------ESLRI 227
           GY  NG   +A+ + +++                                      S  I
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVI 210

Query: 228 KPDADTMAS----LLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
           K   D   S    LL +        V   +++F ++ +K+ VS+N +++VYA + M  EA
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEA 270

Query: 284 VDLYLQMEVHGIEP-NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
            +++ ++  + +   NAI++++VL A     AL +G+ IH  V R  L+ ++ +  +++D
Sbjct: 271 FEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIID 330

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MY KCG +  AR  FD+M+ ++V SWT+MI+ YGM G    A+ LF  M+ SG+ P+ I 
Sbjct: 331 MYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYIT 390

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           FVSVL+ACSHAGL  EG  +F  M  ++ + P +EH+ C+VDLLGRAG +++AYDLI++M
Sbjct: 391 FVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRM 450

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
            M+P+  IW SL+AAC ++ N+++  ++   +F L  +  GYY+LLS+IYA AGRW DV+
Sbjct: 451 KMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVE 510

Query: 523 RVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           RVR  M ++G+ K PG S +E+N +V + 
Sbjct: 511 RVRMIMKNRGLVKPPGFSLLELNGEVHVF 539



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 187/386 (48%), Gaps = 49/386 (12%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC+ + D    I + K+ H Q  +  +  S+  +   L+  Y  CG++ D R VFDEI  
Sbjct: 85  ACSSLFD----IFSGKQTHQQAFVFGY-QSDIFVSSALIVMYSTCGKLEDARKVFDEIPK 139

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY------PCVLKACSGSNSL 146
           +N+V +  +IR Y  N    DA+ ++K++ V   D D   +        V+ ACS   + 
Sbjct: 140 RNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAK 199

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC--GCLKEARRVLNDMPSKDVVTWNSMVA 204
            +   IH  V+K G D  +  GN L+  Y K   G +  AR++ + +  KD V++NS+++
Sbjct: 200 GLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMS 259

Query: 205 GYAQNGRFDEALDVCREMESLRIKP-DADTMASLLPSVTNTSP----------------- 246
            YAQ+G  +EA +V R +   ++   +A T++++L +V+++                   
Sbjct: 260 VYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLE 319

Query: 247 ----------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
                             V + ++ F ++ NKN+ SW  MIA Y  +   A+A++L+  M
Sbjct: 320 DDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAM 379

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLG-RKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
              G+ PN I+  SVL AC      + G R  +    R  ++P L     +VD+  + G 
Sbjct: 380 IDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGF 439

Query: 350 LTEARTVFDQMRCQ-DVVSWTSMISA 374
           L +A  +  +M+ + D + W+S+++A
Sbjct: 440 LQKAYDLIQRMKMKPDSIIWSSLLAA 465



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 105/194 (54%), Gaps = 11/194 (5%)

Query: 233 TMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
           +++ LL +  +T  +N+ ++   ++  D  ++ SWN +IA  A +   AEA+  +  M  
Sbjct: 12  SVSRLLHTERHTERQNLTTLFNRYV--DKTDVFSWNSVIADLARSGDSAEALLAFSSMRK 69

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
             + P   S    + AC  L  +  G++ H+       Q ++ + +AL+ MY+ CG L +
Sbjct: 70  LSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLED 129

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM------SGLCPDSIAFVSV 406
           AR VFD++  +++VSWTSMI  Y ++G   DAV+LF  +L+        +  DS+  VSV
Sbjct: 130 ARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSV 189

Query: 407 LSACSHA---GLLE 417
           +SACS     GL E
Sbjct: 190 ISACSRVPAKGLTE 203



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 144/295 (48%), Gaps = 24/295 (8%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTY--GACGQMVDTRHVFDEITNKNVVF 97
           + P     + +H+  +I +      S+G  L+  Y  G  G +   R +FD+I +K+ V 
Sbjct: 195 RVPAKGLTESIHS-FVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS 253

Query: 98  FNVLIRSYVNNYLYYDALHVYKNM---SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
           +N ++  Y  + +  +A  V++ +    V  F+    T   VL A S S +L +G  IH 
Sbjct: 254 YNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNA--ITLSTVLLAVSHSGALRIGKCIHD 311

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            V+++GL+ ++  G  ++ MY KCG ++ AR+  + M +K+V +W +M+AGY  +G   +
Sbjct: 312 QVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAK 371

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTS--PENVLSVKEMFLKLD-NKNLVSWNVMI 271
           AL++   M    ++P+  T  S+L + ++     E       M  +      L  +  M+
Sbjct: 372 ALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMV 431

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
            +        +A DL  +M+   ++P++I  +S+L AC          +IH+ VE
Sbjct: 432 DLLGRAGFLQKAYDLIQRMK---MKPDSIIWSSLLAAC----------RIHKNVE 473


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 274/478 (57%), Gaps = 35/478 (7%)

Query: 99  NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
           N +IRS   N +    +     M V G +PD +T P VLKA +    +  G QIH   +K
Sbjct: 79  NAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIK 138

Query: 159 VGL-DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
            G+  +N++  N L+ +Y  CG + + ++V ++ P +D+V+W +++  + + G +  A++
Sbjct: 139 TGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVE 198

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSPENV-----------LSVK----------EMF 256
              EM  LR++ D  T+  +L + +N    N+           + +K          +M+
Sbjct: 199 AFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMY 258

Query: 257 LKLDN-------------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
           LK D+             KN+V+WN MI+  A      EA+D +  M+  G++P+ +++ 
Sbjct: 259 LKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLV 318

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
            VL +C +L  L +G+ +H Y+ R  +  +  + NAL+DMYAKCGS+ EA  VF+ M+ +
Sbjct: 319 GVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRR 378

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           DV S+T+MI    + G+   A  +FS+M   G+ P+ + F+ +L ACSH GL+ EG+ YF
Sbjct: 379 DVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYF 438

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
             M+++YKL P+ EH+ C++DLLGRAG V+EA ++I +M + P+    G+L+ AC ++ N
Sbjct: 439 FQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGN 498

Query: 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           +DIG      +  L P++ G Y+L++N+Y+   RW D  ++RK M +K ++K PG S+
Sbjct: 499 VDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSL 556



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 176/372 (47%), Gaps = 36/372 (9%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           I+  +++HA+ I    +  N  +   LMR Y  CG + D + VFDE  ++++V +  LI+
Sbjct: 126 IREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQ 185

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLD 162
           ++    LY  A+  +  M       D  T   VL ACS    L +G ++H  +   + + 
Sbjct: 186 AFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMK 245

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++F GN L+ MY KC  L  A +V ++MP K+VVTWN+M++G A  GR+ EALD  R M
Sbjct: 246 ADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMM 305

Query: 223 ESLRIKPDADTMASLLPSVTNTS-------------PENVLSVK---------------- 253
           +   +KPD  T+  +L S  N                 ++L+ K                
Sbjct: 306 QDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSI 365

Query: 254 ----EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                +F  +  +++ S+  MI   A +     A  ++ +M   GIEPN ++   +L AC
Sbjct: 366 DEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMAC 425

Query: 310 GDLSALLLGRK-IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVS 367
                +  G+K   +  ++ KL+P       ++D+  + G + EA  +  +M  + DV +
Sbjct: 426 SHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFA 485

Query: 368 WTSMISAYGMSG 379
             +++ A  + G
Sbjct: 486 CGALLGACRIHG 497



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 129/272 (47%), Gaps = 10/272 (3%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   +K+H+ I     + ++  +G  L+  Y  C  +     VFDE+  KNVV +N +I
Sbjct: 227 DLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMI 286

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
                   Y +AL  ++ M   G  PD  T   VL +C+    L +G  +H  + +  + 
Sbjct: 287 SGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHIL 346

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            + F GN L+ MY KCG + EA RV   M  +DV ++ +M+ G A +G  + A  V  EM
Sbjct: 347 ADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEM 406

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLVSWNVMIAVYANN 277
             + I+P+  T   LL + ++     V   K+ F ++ +K         +  MI +    
Sbjct: 407 FRVGIEPNEVTFLGLLMACSHGGL--VAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRA 464

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            +  EA ++  +ME   I P+  +  ++L AC
Sbjct: 465 GLVKEAEEIIHKME---IRPDVFACGALLGAC 493


>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 636

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 179/524 (34%), Positives = 287/524 (54%), Gaps = 25/524 (4%)

Query: 36  DILDKYPDIKTLKKLHAQ--IIINQHLHSNPSIGLKLMR--TYGACGQMVDTRHVFDEIT 91
           D+L K   + ++K++     +I    L ++P +  K++   +    G +V  + +F++  
Sbjct: 114 DLLSKLQQLSSVKEVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTA 173

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC----------- 140
             N    N +IR+Y  +     A+++Y  M       D +TYP  LKAC           
Sbjct: 174 MDNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFTYPFGLKACARVLWCNEGDI 233

Query: 141 --SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVT 198
             +  +    G +IHC + ++GLD + F  N LV +Y +CG L  AR V ++M  K + +
Sbjct: 234 KCTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARCVFDEMTEKTITS 293

Query: 199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLK 258
           WN M++ Y Q   FD A  +   M      P  + ++  +          +   K +F +
Sbjct: 294 WNVMISAYDQINDFDSADSLIGSM------PGKNVVSWNMLIARYIRLGKIEDAKVVFQE 347

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +  ++ VSWN MIA Y      A A+ L+ +ME+  +E   I++ SVL AC +  AL +G
Sbjct: 348 MPERDAVSWNSMIAGYVQIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIG 407

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           RKIH  +++++ +    L NALVDMYAKCG L  A  VF +++ + +  W +MI +  + 
Sbjct: 408 RKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVH 467

Query: 379 GQGYDAVALFSKMLMS--GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
           G   +A+ LFS M MS  G  P+ + F+ VL ACSH GL++EGR +F  M  +YK++P I
Sbjct: 468 GYCEEALRLFSTMEMSVDGARPNRVTFIGVLIACSHKGLVDEGRTFFNRMVNEYKIMPDI 527

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           +H+ C+VDLL R G ++EA+ +IK MP E N  +W +L+ AC ++ ++D+   +   +  
Sbjct: 528 KHYGCMVDLLSRCGLLKEAHHMIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGK 587

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           + P + G YVLLSNIYA+A RW DV+RVR  M   G+ K PG+S
Sbjct: 588 MEPLRDGDYVLLSNIYAEAQRWNDVERVRSEMIGSGVPKKPGSS 631


>gi|302142318|emb|CBI19521.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 179/546 (32%), Positives = 278/546 (50%), Gaps = 78/546 (14%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           YG  G +   +H+F+E+  ++VV +N LI  Y  N   YDAL V+  M   GF P   T 
Sbjct: 203 YGKLGCIYYAQHLFEEMPRRDVVSWNALICGYSRNGYDYDALEVFVQMLREGFPPCQRTL 262

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLD------------YNLFNGNGLVAMYGK---- 177
             ++ +C   + +  G  IH   +K GLD            Y  F+ N ++  YG+    
Sbjct: 263 VGLVPSCGRPDIIFQGKAIHGFGIKSGLDLDCRVKNALTSMYAKFSWNTMIGAYGQNGLF 322

Query: 178 -----------------------------CGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
                                        CG ++ A  + N MP +++V+  +M++GYA+
Sbjct: 323 DEAMLVFKQMQKERVEVNYVTIIMCSYAGCGNIESAGLLYNLMPQRNLVSLTAMISGYAE 382

Query: 209 NGRFDEALDVCREMESLRIKPDADTMASLLPSVTN------------------------- 243
            G     ++   +M  L++KPDA  M S+L   T+                         
Sbjct: 383 KGNMGLVVECFTQMLQLKMKPDAVAMVSILHGFTDPTFIGSGLGIHAYGLKTGLCADCLV 442

Query: 244 --------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
                   +   ++ +V  +F ++  K L+SWN +I+        ++A++L+ QM ++G 
Sbjct: 443 VNGLISMYSKFGDIETVFSLFSEMGEKQLISWNSVISACIQVGRTSDAMELFCQMRMYGH 502

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
            P+AI++AS+L  C ++  L  G ++H YV R  L     LE ALVDMY KCG L  A  
Sbjct: 503 SPDAITIASLLAGCSEVGFLQFGERLHNYVLRNNLDMEDFLETALVDMYIKCGRLESAER 562

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           VF  ++   + +W +MIS YG+SG  + A++ +S+M   GL PD I F+ VLSAC+H GL
Sbjct: 563 VFKSIKEPCLATWNTMISGYGLSGHEHRALSCYSEMQEQGLKPDRITFLGVLSACTHGGL 622

Query: 416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
           + EG+ YF+ M E + ++P ++H AC+VDLL RAG +EEA   +K M +EP+  IWG+L+
Sbjct: 623 VWEGKRYFRSMREDFGMIPGLQHNACMVDLLSRAGFLEEAVIFVKNMEVEPDSAIWGALL 682

Query: 476 AACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK 535
            +CC++  + +G   A  +  L     G YVL+SN+YA  GRW DV RVRK M   G   
Sbjct: 683 TSCCIHQELKLGECLAKRLLLLDYYSGGLYVLMSNLYASKGRWDDVARVRKMMKDTGGDG 742

Query: 536 MPGASV 541
             G S+
Sbjct: 743 SSGISL 748



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 152/346 (43%), Gaps = 61/346 (17%)

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
           QI   + K G +  ++     +  YGK GC+  A+ +  +MP +DVV+WN+++ GY++NG
Sbjct: 179 QIQTHLRKSGFNQYVYLTTAFLDFYGKLGCIYYAQHLFEEMPRRDVVSWNALICGYSRNG 238

Query: 211 RFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMF-------LKLDN-- 261
              +AL+V  +M      P   T+  L+PS     P+ +   K +        L LD   
Sbjct: 239 YDYDALEVFVQMLREGFPPCQRTLVGLVPSCGR--PDIIFQGKAIHGFGIKSGLDLDCRV 296

Query: 262 KNLV-------SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           KN +       SWN MI  Y  N +  EA+ ++ QM+   +E N +++            
Sbjct: 297 KNALTSMYAKFSWNTMIGAYGQNGLFDEAMLVFKQMQKERVEVNYVTI------------ 344

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
                                    ++  YA CG++  A  +++ M  +++VS T+MIS 
Sbjct: 345 -------------------------IMCSYAGCGNIESAGLLYNLMPQRNLVSLTAMISG 379

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR--YYFKIMTEQYKL 432
           Y   G     V  F++ML   + PD++A VS+L   +    +  G   + + + T    L
Sbjct: 380 YAEKGNMGLVVECFTQMLQLKMKPDAVAMVSILHGFTDPTFIGSGLGIHAYGLKT---GL 436

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
                    L+ +  + G +E  + L  +M  E     W S+++AC
Sbjct: 437 CADCLVVNGLISMYSKFGDIETVFSLFSEMG-EKQLISWNSVISAC 481



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 146/340 (42%), Gaps = 35/340 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           +M +Y  CG +     +++ +  +N+V    +I  Y         +  +  M      PD
Sbjct: 345 IMCSYAGCGNIESAGLLYNLMPQRNLVSLTAMISGYAEKGNMGLVVECFTQMLQLKMKPD 404

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
                 +L   +    +  GL IH   +K GL  +    NGL++MY K G ++    + +
Sbjct: 405 AVAMVSILHGFTDPTFIGSGLGIHAYGLKTGLCADCLVVNGLISMYSKFGDIETVFSLFS 464

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT------- 242
           +M  K +++WNS+++   Q GR  +A+++  +M      PDA T+ASLL   +       
Sbjct: 465 EMGEKQLISWNSVISACIQVGRTSDAMELFCQMRMYGHSPDAITIASLLAGCSEVGFLQF 524

Query: 243 -----------NTSPENVL---------------SVKEMFLKLDNKNLVSWNVMIAVYAN 276
                      N   E+ L               S + +F  +    L +WN MI+ Y  
Sbjct: 525 GERLHNYVLRNNLDMEDFLETALVDMYIKCGRLESAERVFKSIKEPCLATWNTMISGYGL 584

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV-ERKKLQPNLR 335
           +     A+  Y +M+  G++P+ I+   VL AC     +  G++  R + E   + P L+
Sbjct: 585 SGHEHRALSCYSEMQEQGLKPDRITFLGVLSACTHGGLVWEGKRYFRSMREDFGMIPGLQ 644

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
               +VD+ ++ G L EA      M  + D   W +++++
Sbjct: 645 HNACMVDLLSRAGFLEEAVIFVKNMEVEPDSAIWGALLTS 684



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 114/255 (44%), Gaps = 10/255 (3%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G +     +F E+  K ++ +N +I + +      DA+ ++  M ++G  PD
Sbjct: 446 LISMYSKFGDIETVFSLFSEMGEKQLISWNSVISACIQVGRTSDAMELFCQMRMYGHSPD 505

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   +L  CS    L  G ++H  V++  LD   F    LV MY KCG L+ A RV  
Sbjct: 506 AITIASLLAGCSEVGFLQFGERLHNYVLRNNLDMEDFLETALVDMYIKCGRLESAERVFK 565

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN-----T 244
            +    + TWN+M++GY  +G    AL    EM+   +KPD  T   +L + T+      
Sbjct: 566 SIKEPCLATWNTMISGYGLSGHEHRALSCYSEMQEQGLKPDRITFLGVLSACTHGGLVWE 625

Query: 245 SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
                 S++E F  +    L     M+ + +      EAV     MEV   EP++    +
Sbjct: 626 GKRYFRSMREDFGMI--PGLQHNACMVDLLSRAGFLEEAVIFVKNMEV---EPDSAIWGA 680

Query: 305 VLPACGDLSALLLGR 319
           +L +C     L LG 
Sbjct: 681 LLTSCCIHQELKLGE 695



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 3/159 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LH  ++ N +L     +   L+  Y  CG++     VF  I    +  +N +I  Y  
Sbjct: 526 ERLHNYVLRN-NLDMEDFLETALVDMYIKCGRLESAERVFKSIKEPCLATWNTMISGYGL 584

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYNLF 166
           +   + AL  Y  M   G  PD  T+  VL AC+    +  G +   S+ +  G+   L 
Sbjct: 585 SGHEHRALSCYSEMQEQGLKPDRITFLGVLSACTHGGLVWEGKRYFRSMREDFGMIPGLQ 644

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVA 204
           +   +V +  + G L+EA   + +M  + D   W +++ 
Sbjct: 645 HNACMVDLLSRAGFLEEAVIFVKNMEVEPDSAIWGALLT 683


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 175/526 (33%), Positives = 285/526 (54%), Gaps = 36/526 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +K+H  ++     H +  +   L+  Y   G +     VF ++  ++V  +N +I  +  
Sbjct: 167 EKMHCWVLKMGFEH-DVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQ 225

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    +AL V   M       D  T   +L  C+ SN ++ G+ +H  V+K GL+ ++F 
Sbjct: 226 NGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFV 285

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY K G L++A+RV + M  +D+V+WNS++A Y QN     AL   +EM  + +
Sbjct: 286 SNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGM 345

Query: 228 KPDADTMASLLPSVTNTSPENV-------------LSV---------------------K 253
           +PD  T+ SL       S   +             L V                     +
Sbjct: 346 RPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCAR 405

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV-HGIEPNAISVASVLPACGDL 312
            +F +L +++++SWN +I  YA N + +EA+D Y  ME    I PN  +  S+LPA   +
Sbjct: 406 AVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHV 465

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
            AL  G KIH  + +  L  ++ +   L+DMY KCG L +A ++F ++  +  V W ++I
Sbjct: 466 GALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAII 525

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           S+ G+ G G  A+ LF  M   G+  D I FVS+LSACSH+GL++E ++ F  M ++Y++
Sbjct: 526 SSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRI 585

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAAD 492
            P ++H+ C+VDL GRAG +E+AY+L+  MP++ +  IWG+L+AAC ++ N ++G  A+D
Sbjct: 586 KPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASD 645

Query: 493 HIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
            +  +     GYYVLLSNIYA  G+W    +VR     +G++K PG
Sbjct: 646 RLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPG 691



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 154/503 (30%), Positives = 266/503 (52%), Gaps = 62/503 (12%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGL--KLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           +I   K+LHA +++   L     + L  +L+  Y   G +  +   F  I  KN+  +N 
Sbjct: 63  NINVAKQLHALLLV---LGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNS 119

Query: 101 LIRSYVNNYLYYDALH-VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
           ++ +YV    Y D++  V + +S+ G  PD YT+P VLKAC    SL  G ++HC V+K+
Sbjct: 120 MVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACL---SLADGEKMHCWVLKM 176

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G +++++    L+ +Y + G ++ A +V  DMP +DV +WN+M++G+ QNG   EAL V 
Sbjct: 177 GFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVL 236

Query: 220 REMESLRIKPDADTMASLLP--SVTNTSPENVL--------------------------- 250
             M++  +K D  T++S+LP  + +N     VL                           
Sbjct: 237 DRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKF 296

Query: 251 ----SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
                 + +F  ++ ++LVSWN +IA Y  N  P  A+  + +M   G+ P+ ++V S+ 
Sbjct: 297 GRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLA 356

Query: 307 PACGDLSALLLGRKIHRYVER-KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
              G LS   +GR +H +V R + L+ ++ + NALV+MYAK GS+  AR VF+Q+  +DV
Sbjct: 357 SIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDV 416

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSG--LCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           +SW ++I+ Y  +G   +A+  ++ M+  G  + P+   +VS+L A SH G L++G    
Sbjct: 417 ISWNTLITGYAQNGLASEAIDAYN-MMEEGRTIVPNQGTWVSILPAYSHVGALQQG---M 472

Query: 424 KIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA----- 476
           KI     K    ++ F   CL+D+ G+ G++E+A  L  ++P E +   W ++++     
Sbjct: 473 KIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVP-WNAIISSLGIH 531

Query: 477 -----ACCLYSNMDIGILAADHI 494
                A  L+ +M    + ADHI
Sbjct: 532 GHGEKALQLFKDMRADGVKADHI 554



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 174/362 (48%), Gaps = 34/362 (9%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           +  V ++C+  N   V  Q+H  ++ +G   ++     LV +Y   G L  +      + 
Sbjct: 54  FNLVFRSCTNIN---VAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQ 110

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR-IKPDADTMASLLPSVTNTSPEN--- 248
            K++ +WNSMV+ Y + GR+ +++D   E+ SL  ++PD  T   +L +  + +      
Sbjct: 111 RKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMH 170

Query: 249 ---------------------------VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
                                      V    ++F+ +  +++ SWN MI+ +  N   A
Sbjct: 171 CWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVA 230

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
           EA+ +  +M+   ++ + ++V+S+LP C   + ++ G  +H YV +  L+ ++ + NAL+
Sbjct: 231 EALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALI 290

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           +MY+K G L +A+ VFD M  +D+VSW S+I+AY  +     A+  F +ML  G+ PD +
Sbjct: 291 NMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLL 350

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
             VS+ S          GR     +     L   I     LV++  + G ++ A  + +Q
Sbjct: 351 TVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQ 410

Query: 462 MP 463
           +P
Sbjct: 411 LP 412


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 184/582 (31%), Positives = 306/582 (52%), Gaps = 71/582 (12%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKL--MRTYGACGQMVDTRHVFDEITNKN 94
           ++D+   ++ LK+ HA +I    + S+P    KL  +    +   +   R VFDEI   N
Sbjct: 37  LIDRCSSLRQLKQTHAHMI-RTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPN 95

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNM--SVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
              +N LIR+Y +      ++  + +M  S     P+ YT+P ++KA +  +SL +G  +
Sbjct: 96  SFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSL 155

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H   +K  +  ++F  N L+  Y  CG L  A +V   +  KDVV+WNSM+ G+ Q G  
Sbjct: 156 HGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSP 215

Query: 213 DEALDVCREMESLRIKPDADTMASLLPS------------VTNTSPENVLSV-------- 252
           D+AL++ ++MES  +K    TM  +L +            V +   EN ++V        
Sbjct: 216 DKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAM 275

Query: 253 -------------KEMFLKLDNKNLVS-------------------------------WN 268
                        K +F  ++ K+ V+                               WN
Sbjct: 276 LDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWN 335

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
            +I+ Y  N  P EA+ ++ ++++   I+ N I++ S L AC  + AL LGR IH Y+++
Sbjct: 336 ALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKK 395

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
             ++ N  + +AL+ MY+KCG L +AR VF+ +  +DV  W++MI    M G G +AV +
Sbjct: 396 NGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDM 455

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           F KM  + + P+ + F +V  ACSH GL++E    F  M   Y +VP  +H+AC+VD+LG
Sbjct: 456 FYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLG 515

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507
           R+G +E+A   I+ MP+ P+  +WG+L+ AC +++N+ +  +A   +  L P   G +VL
Sbjct: 516 RSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVL 575

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           LSNIYAK+G+W +V  +RK M   G+KK PG +S+E++  + 
Sbjct: 576 LSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIH 617


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 167/517 (32%), Positives = 291/517 (56%), Gaps = 36/517 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  YG C ++     VFD +  +NVV +  L+  Y+       +L +   M   G  P+
Sbjct: 45  LIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPN 104

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +T+   LKAC     +  G+QIH   VK G ++    GN  + MY KCG +  A +V N
Sbjct: 105 EFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFN 164

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
            MP +++V+WN+M+AG+   G   ++L + + M+     PD  T  S L +         
Sbjct: 165 KMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRG 224

Query: 241 --------VTNTSPENVLSV------------------KEMFLKLDNKNLVSWNVMIAVY 274
                   +T   P ++ ++                  +++F +++ KNL+SW+ +I  +
Sbjct: 225 GTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGF 284

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           A      EA+DL+ Q+       +   ++ ++    DL+ +  G+++H Y+ +     ++
Sbjct: 285 AQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDI 344

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + N+++DMY KCG   EA  +F +M+ ++VVSWT MI+ YG  G G  A+ LF++M + 
Sbjct: 345 SVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLD 404

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           G+  D +A++++LSACSH+GL+ E + YF  +   +++ P IEH+AC+VD+LGRAG+++E
Sbjct: 405 GIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKE 464

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A +LI+ M ++PNE IW +L++AC ++ N++IG    + +F +  +    YV++SNIYA+
Sbjct: 465 AKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAE 524

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           AG W + +RVRK + +KG+KK  G S VE+N ++   
Sbjct: 525 AGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIHFF 561



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 195/412 (47%), Gaps = 55/412 (13%)

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
           +L+ CS +     GLQ+H + V +G  ++L   N L+ MYGKC  +  A  V + M  ++
Sbjct: 10  LLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERN 69

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS------VTNTSPENV 249
           VV+W +++ GY Q G    +L +  EM    +KP+  T ++ L +      V N    + 
Sbjct: 70  VVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHG 129

Query: 250 LSVK---------------------------EMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
           + VK                           ++F K+  +NLVSWN MIA + +     +
Sbjct: 130 MCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRK 189

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR--LENAL 340
           ++ L+ +M+  G  P+  +  S L ACG L A+  G +IH  +  +    ++R  + +A+
Sbjct: 190 SLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAI 249

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           VD+YAKCG L EA+ VFD++  ++++SW+++I  +   G   +A+ LF ++  S    D 
Sbjct: 250 VDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDG 309

Query: 401 IAFVSVLSACSHAGLLEEGR----YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
                ++   +   L+E+G+    Y  K+ +        I     ++D+  + G  EEA 
Sbjct: 310 FVLSIMMGVFADLALVEQGKQMHCYILKVPSG-----LDISVANSIIDMYLKCGLTEEAE 364

Query: 457 DLIKQMPMEPNERIWGSLVA----------ACCLYSNMDIGILAADHIFHLA 498
            L  +M +  N   W  ++           A  L++ M +  +  D + +LA
Sbjct: 365 RLFSEMQVR-NVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLA 415



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 174/349 (49%), Gaps = 43/349 (12%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G   +  Y  CG++     VF+++  +N+V +N +I  + +      +L +++ M   G
Sbjct: 142 VGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQG 201

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN--GNGLVAMYGKCGCLKE 183
             PD +T+   LKAC    ++  G QIH S++  G   ++ N   + +V +Y KCG L E
Sbjct: 202 EVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFE 261

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL----- 238
           A++V + +  K++++W++++ G+AQ G   EA+D+ R++       D   ++ ++     
Sbjct: 262 AQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFAD 321

Query: 239 -----------------PSVTNTSPENVL-----------SVKEMFLKLDNKNLVSWNVM 270
                            PS  + S  N +             + +F ++  +N+VSW VM
Sbjct: 322 LALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVM 381

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER--- 327
           I  Y  + +  +A+ L+ +M++ GIE + ++  ++L AC   S L+  R+   Y  R   
Sbjct: 382 ITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSH-SGLI--RESQEYFSRLCN 438

Query: 328 -KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
             +++PN+     +VD+  + G L EA+ + + M+ + +   W +++SA
Sbjct: 439 NHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSA 487



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 4/177 (2%)

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           +A +L  C        G ++H          +L + N L+DMY KC  +  A +VFD+M 
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-R 420
            ++VVSWT+++  Y   G    ++AL  +M  SG+ P+   F + L AC   G++E G +
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            +   +   ++ V  + +    +D+  + G++  A  +  +MP   N   W +++A 
Sbjct: 127 IHGMCVKSGFEWVSVVGN--ATIDMYSKCGRIGMAEQVFNKMPFR-NLVSWNAMIAG 180



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 28/182 (15%)

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
           S+   ++  Y  CG   +   +F E+  +NVV + V+I  Y  + L   A+H++  M + 
Sbjct: 345 SVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLD 404

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY------------NLFNGNGLV 172
           G + D   Y  +L ACS           H  +++   +Y            N+ +   +V
Sbjct: 405 GIELDEVAYLALLSACS-----------HSGLIRESQEYFSRLCNNHQMKPNIEHYACMV 453

Query: 173 AMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA 231
            + G+ G LKEA+ ++ +M  K +   W ++++    +G     L++ RE+  +  + D 
Sbjct: 454 DILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGN----LEIGREVGEILFRMDT 509

Query: 232 DT 233
           D 
Sbjct: 510 DN 511


>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 166/469 (35%), Positives = 262/469 (55%), Gaps = 7/469 (1%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G M     +F  IT  +   +N +IR    +    +A+ +Y  M      PD +T+P VL
Sbjct: 26  GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVL 85

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
           KAC+    + +G  +H  V ++G + N F  N L+  +  CG L  AR + +    +DVV
Sbjct: 86  KACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVV 145

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
            W+++ AGYA+ G    A  +  EM      P  D ++  +          + S +++F 
Sbjct: 146 AWSALTAGYARRGELGVARQLFDEM------PVKDLVSWNVMITGYAKRGEMESARKLFD 199

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
           ++  +++V+WN MIA Y       +A++++ +M   G  P+ +++ S+L AC DL  L  
Sbjct: 200 EVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDA 259

Query: 318 GRKIHRYVERKKLQP-NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
           G++IH  +     +  ++ L NAL+DMYAKCGS+  A  VF  MR +DV +W S++    
Sbjct: 260 GQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLA 319

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
             G    ++ LF++M    + PD I FV VL ACSHAG +EEGR YF +M ++Y + P I
Sbjct: 320 FHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNI 379

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
            H+ C+VDLLGRAG + EA+D I  M +EPN  +W +L+ AC ++ N+++G  A   +  
Sbjct: 380 RHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLK 439

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMND 545
           +  ++SG YVLLSNIYA  G W  V++VRK M+  G++K  G S+   D
Sbjct: 440 MRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLIEGD 488



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 130/257 (50%), Gaps = 11/257 (4%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y   G+M   R +FDE+  ++VV +N +I  YV       AL +++ M   G  PD
Sbjct: 181 MITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPD 240

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL-DYNLFNGNGLVAMYGKCGCLKEARRVL 188
             T   +L AC+    L  G +IHC + ++G  D ++  GN L+ MY KCG +  A  V 
Sbjct: 241 EVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVF 300

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
             M  KDV TWNS++ G A +G  ++++ +  EM  L+I+PD  T   +L + ++     
Sbjct: 301 QGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAG--R 358

Query: 249 VLSVKEMFLKLDNK-----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
           V   ++ F  + ++     N+  +  M+ +     +  EA D    M+   IEPNAI   
Sbjct: 359 VEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMK---IEPNAIVWR 415

Query: 304 SVLPACGDLSALLLGRK 320
           ++L AC     + LGR+
Sbjct: 416 TLLGACRIHGNVELGRR 432



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 145/356 (40%), Gaps = 75/356 (21%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
             SN  +   L+  +  CG +   R +FD    ++VV ++ L   Y        A  ++ 
Sbjct: 109 FESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFD 168

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M V                                        +L + N ++  Y K G
Sbjct: 169 EMPVK---------------------------------------DLVSWNVMITGYAKRG 189

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
            ++ AR++ +++P +DVVTWN+M+AGY   G   +AL++  EM S+   PD  TM SLL 
Sbjct: 190 EMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLS 249

Query: 240 SVTNTSP----------------------------------ENVLSVKEMFLKLDNKNLV 265
           + T+                                      +++   E+F  +  K++ 
Sbjct: 250 ACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVS 309

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           +WN ++   A +    +++ L+ +M    I P+ I+   VL AC     +  GR+    +
Sbjct: 310 TWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLM 369

Query: 326 ERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSG 379
             +  ++PN+R    +VD+  + G L EA    D M+ + + + W +++ A  + G
Sbjct: 370 RDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHG 425


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 168/523 (32%), Positives = 278/523 (53%), Gaps = 34/523 (6%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
           + ++ S+   L+  Y  C ++   R +FD + N+N+V +  +I  Y+ N    +A+ ++ 
Sbjct: 246 VETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFW 305

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            +S  G+ PD +    +L +C    ++  G Q+H   +K  L+ + +  N L+ MY KC 
Sbjct: 306 QLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCE 365

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
            L EAR V   +   D +++N+M+ GY++ G    A+DV  +M    +KP   T  SLL 
Sbjct: 366 HLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLG 425

Query: 240 SVTNTSPEN---------------------------------VLSVKEMFLKLDNKNLVS 266
             ++ S                                    V   K +F  + N+++V 
Sbjct: 426 VSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVI 485

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           WN MI   A N    EAV L+ Q++V G+ PN  +  +++     L ++  G++ H  + 
Sbjct: 486 WNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQII 545

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           +     +  + NAL+DMYAKCG + E R +F+    +DV+ W SMIS Y   GQ  +A+ 
Sbjct: 546 KAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALY 605

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           +F  M  +G+ P+ + FV VLSAC+HAGL++EG  +F  M  +Y + P  EH+A +V+L 
Sbjct: 606 VFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVVNLF 665

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
           GR+GK+  A + I++MP+EP   +W SL++AC L+ N++IG  A +      P  SG  V
Sbjct: 666 GRSGKLHAAKEFIERMPIEPAAAVWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSV 725

Query: 507 LLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           L+SNIYA  G W D +++R+ M+  G+ K PG S +E+  +V 
Sbjct: 726 LMSNIYASRGLWSDAQKLRQGMDCAGVVKEPGYSWIEVMKEVH 768



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 126/410 (30%), Positives = 213/410 (51%), Gaps = 40/410 (9%)

Query: 45  KTLKKLHAQIIINQHLHSNPSIGLK--LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           + L   HA+ ++   L   P + L   L+R Y   G++ D R +FD + +KN+V +   I
Sbjct: 28  RLLPLAHARAVVTGAL---PDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAI 84

Query: 103 RSYVNNYLYYDALHVYKNM--SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
             +  +    DA+ ++     +  G  P+ +     L+AC+ S ++  G Q+H   V++G
Sbjct: 85  SMHAQHGCEEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIG 144

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
           LD N++ G  L+ +Y K GC+  A  V + +P K+ VTW +++ GY+Q G+   AL++  
Sbjct: 145 LDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFG 204

Query: 221 EMESLRIKPDADTMASLLPSV----------------------TNTSPENVLS------- 251
           +M    ++PD   +AS + +                       T+ S  N L        
Sbjct: 205 KMGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCS 264

Query: 252 ----VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                +++F  ++N+NLVSW  MIA Y  NS  AEA+ ++ Q+   G +P+  + AS+L 
Sbjct: 265 RLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILN 324

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           +CG L+A+  GR++H +  +  L+ +  ++N+L+DMYAKC  LTEAR VF+ +   D +S
Sbjct: 325 SCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAIS 384

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           + +MI  Y   G    A+ +FSKM    L P  + FVS+L   S    +E
Sbjct: 385 YNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIE 434



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 148/303 (48%), Gaps = 35/303 (11%)

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H   V  G   +LF  N L+  Y K G +++ARR+ + MP K++V+W S ++ +AQ+G  
Sbjct: 34  HARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCE 93

Query: 213 DEALDVCREME--SLRIKPDADTMASLLPSVTNTSPEN---------------------- 248
           ++A+ +    +  S    P+   +AS L +   +   +                      
Sbjct: 94  EDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGT 153

Query: 249 -----------VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297
                      + +   +F  L  KN V+W  +I  Y+       A++L+ +M + G+ P
Sbjct: 154 ALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRP 213

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           +   +AS + AC  L  L  GR+ H Y  R  ++ +  + NAL+D+Y KC  L+ AR +F
Sbjct: 214 DRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLF 273

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           D M  +++VSWT+MI+ Y  +    +A+A+F ++   G  PD  A  S+L++C     + 
Sbjct: 274 DCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIW 333

Query: 418 EGR 420
           +GR
Sbjct: 334 QGR 336



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 119/235 (50%), Gaps = 12/235 (5%)

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY--LQMEVHGIEPNAISVASVL 306
           V   + +F ++ +KNLVSW   I+++A +    +AV L+   Q    G  PN   +AS L
Sbjct: 62  VRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQRASGGEAPNEFLLASAL 121

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
            AC    A+  G+++H    R  L  N+ +  AL+++YAK G +  A  VFD +  ++ V
Sbjct: 122 RACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPV 181

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YY 422
           +WT++I+ Y   GQG  A+ LF KM + G+ PD     S +SACS  G LE GR    Y 
Sbjct: 182 TWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYA 241

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           ++I  E    V        L+DL  +  ++  A  L   M    N   W +++A 
Sbjct: 242 YRIAVETDASV-----INALIDLYCKCSRLSLARKLFDCME-NRNLVSWTTMIAG 290



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 158/350 (45%), Gaps = 39/350 (11%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           I+  K++H  +I+      +   G  L+  Y     + D + VF+ + N+++V +N +I 
Sbjct: 433 IELSKQIHG-LIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIF 491

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
               N    +A+ ++  + V G  P+ +T+  ++   S   S+  G Q H  ++K G D 
Sbjct: 492 GLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADS 551

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           +    N L+ MY KCG +KE R +      KDV+ WNSM++ YAQ+G+ +EAL V R M 
Sbjct: 552 DHHVSNALIDMYAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMG 611

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYA---NNSMP 280
              ++P+  T   +L +  +               L ++ L  ++ M   YA        
Sbjct: 612 GTGVEPNYVTFVGVLSACAHAG-------------LVDEGLRHFDFMKTKYAIEPGTEHY 658

Query: 281 AEAVDLYLQ----------MEVHGIEPNAISVASVLPACGDLSALLLGR---KIHRYVER 327
           A  V+L+ +          +E   IEP A    S+L AC     + +GR   ++    + 
Sbjct: 659 ASVVNLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLSACHLFGNVEIGRYATEMALLADP 718

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV-----SWTSMI 372
               P++ + N    +YA  G  ++A+ +   M C  VV     SW  ++
Sbjct: 719 ADSGPSVLMSN----IYASRGLWSDAQKLRQGMDCAGVVKEPGYSWIEVM 764


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 167/488 (34%), Positives = 276/488 (56%), Gaps = 45/488 (9%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y     +   R  FD +  ++VV +N ++  Y  N L  + L ++  M   G +PD  T+
Sbjct: 204 YAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTW 263

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             V+ ACS      +   +  ++ +  +  N F    L+ MY KCG +  ARR+ +++ +
Sbjct: 264 VTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGA 323

Query: 194 -KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSV 252
            ++ VTWN+M++ Y + G  D                                     S 
Sbjct: 324 YRNSVTWNAMISAYTRVGNLD-------------------------------------SA 346

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGD 311
           +E+F  +  +N+V+WN MIA YA N   A A++L+ +M     + P+ +++ SV+ ACG 
Sbjct: 347 RELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGH 406

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           L AL LG  + R++   +++ ++   NA++ MY++CGS+ +A+ VF +M  +DVVS+ ++
Sbjct: 407 LGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTL 466

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           IS +   G G +A+ L S M   G+ PD + F+ VL+ACSHAGLLEEGR  F+ + +   
Sbjct: 467 ISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD--- 523

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
             P I+H+AC+VDLLGR G++E+A   +++MPMEP+  ++GSL+ A  ++  +++G LAA
Sbjct: 524 --PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAA 581

Query: 492 DHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           + +F L P+ SG ++LLSNIYA AGRW DV+R+R+ M   G+KK  G S VE   ++   
Sbjct: 582 NKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKF 641

Query: 551 ALPLRSSK 558
            +  RS +
Sbjct: 642 IVADRSHE 649



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 7/173 (4%)

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
           + N+    A+V  YAK   L  AR  FD M  + VVSW +M+S Y  +G   + + LF +
Sbjct: 191 ERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDE 250

Query: 391 MLMSGLCPDSIAFVSVLSACSHAG-LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           M+ +G+ PD   +V+V+SACS  G           +  +Q +L   +     L+D+  + 
Sbjct: 251 MVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVR--TALLDMYAKC 308

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS 502
           G +  A  +  ++    N   W ++++A     N+D    +A  +F+  P ++
Sbjct: 309 GSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLD----SARELFNTMPGRN 357


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 172/471 (36%), Positives = 267/471 (56%), Gaps = 45/471 (9%)

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSG 142
           + +FDE+ +++V+ +NV+I  YV    + DA++V+  M    G  PD  T    L AC+ 
Sbjct: 192 KMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTA 251

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
              L +G +IH   V+  + +    GN L+ MY KCGCL  AR V  +MPSK+V+ W +M
Sbjct: 252 LKRLELGKKIH-HYVRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTM 310

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK 262
           V+GYA  G  +EA                                     +E+F     +
Sbjct: 311 VSGYANCGELEEA-------------------------------------RELFEGSPIR 333

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH 322
           ++V W  MI  Y   +   EAV L+ +M++  ++P+   V S+L  C    A+  G+ IH
Sbjct: 334 DVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIH 393

Query: 323 RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY 382
            +++  ++  +  +  AL++MYAKCG + +A  +F  +R +D  SWTS+I    M+G+  
Sbjct: 394 EFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTS 453

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL 442
            A+ LFSKM  +G+ PD I F+ VLSACSH GL+EEGR +F  M  +Y++ P++EH+ CL
Sbjct: 454 KALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCL 513

Query: 443 VDLLGRAGKVEEAYDLIKQMPMEPNERI----WGSLVAACCLYSNMDIGILAADHIFHLA 498
           VDLLGRAG + EA +LIK++P E N+ I    +GSL++AC +Y N+++G   A  +    
Sbjct: 514 VDLLGRAGLLNEAEELIKKIPDE-NKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFE 572

Query: 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
            + S  + LL+NIYA A RW DV +VR+ M   G+KK PG +S+E++  + 
Sbjct: 573 SSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSIIH 623



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 89/170 (52%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y  CG++ + R +F+    ++VV +  +I  YV    + +A+ +++ M +    PD +  
Sbjct: 314 YANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIV 373

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             +L  C+ + ++  G  IH  + +  +  +   G  L+ MY KCG +++A  +   +  
Sbjct: 374 VSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRV 433

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           KD  +W S++ G A NG+  +AL++  +M+   ++PD  T   +L + ++
Sbjct: 434 KDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSH 483


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 170/497 (34%), Positives = 283/497 (56%), Gaps = 46/497 (9%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           KL  +++   H+H N SI +     + +CG M + R VFDE   +++V +N LI  Y   
Sbjct: 184 KLRLELV--SHVH-NASIHM-----FASCGDMENARKVFDESPVRDLVSWNCLINGYKKI 235

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
                A++VYK M   G  PD  T   ++ +CS    L  G + +  V + GL   +   
Sbjct: 236 GEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLV 295

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           N L+ M+ KCG + EARR+ +++  + +V+W +M++GYA+ G     LDV R++      
Sbjct: 296 NALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCG----LLDVSRKL------ 345

Query: 229 PDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
                                      F  ++ K++V WN MI          +A+ L+ 
Sbjct: 346 ---------------------------FDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQ 378

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           +M+    +P+ I++   L AC  L AL +G  IHRY+E+  L  N+ L  +LVDMYAKCG
Sbjct: 379 EMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCG 438

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
           +++EA +VF  ++ ++ +++T++I    + G    A++ F++M+ +G+ PD I F+ +LS
Sbjct: 439 NISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLS 498

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
           AC H G+++ GR YF  M  ++ L P+++H++ +VDLLGRAG +EEA  L++ MPME + 
Sbjct: 499 ACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADA 558

Query: 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
            +WG+L+  C ++ N+++G  AA  +  L P+ SG YVLL  +Y +A  W D KR R+ M
Sbjct: 559 AVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMM 618

Query: 529 NSKGIKKMPG-ASVEMN 544
           N +G++K+PG +S+E+N
Sbjct: 619 NERGVEKIPGCSSIEVN 635



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 103/200 (51%), Gaps = 4/200 (2%)

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI---EPNAISVASVLPACGDLSAL 315
           ++N N+ SWNV I  ++ +  P E+  LY QM  HG     P+  +   +   C DL   
Sbjct: 113 IENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLS 172

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
            LG  I  +V + +L+    + NA + M+A CG +  AR VFD+   +D+VSW  +I+ Y
Sbjct: 173 SLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGY 232

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
              G+   A+ ++  M   G+ PD +  + ++S+CS  G L  G+ +++ + E   L   
Sbjct: 233 KKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKEN-GLRMT 291

Query: 436 IEHFACLVDLLGRAGKVEEA 455
           I     L+D+  + G + EA
Sbjct: 292 IPLVNALMDMFSKCGDIHEA 311


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 181/531 (34%), Positives = 296/531 (55%), Gaps = 39/531 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +H     N  + S+  +G  L+  Y  CGQM +   VF+E    + V +  ++  Y  
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 108 NYLYYDALHVYKNMSVHG---FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
           N    +AL ++  M +      DP   T   V+ AC+   ++  G  +H  V++   D +
Sbjct: 183 NNDPEEALALFSQMVMMDCVVLDP--VTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGD 240

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
           L   N L+ +Y K GC K A  + + MP KDV++W++M+A YA N   +EAL++  EM  
Sbjct: 241 LPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIE 300

Query: 225 LRIKPDADTMASLLPS--VTNTSPENV--------------LSVK--------------- 253
            R +P++ T+ S L +  V+    E                 SV                
Sbjct: 301 KRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDE 360

Query: 254 --EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
             ++F +L  K++VSW  +++ YA N M  +++ ++  M   GI+P+A++V  +L A  +
Sbjct: 361 AVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSE 420

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           L        +H YV R     N+ +  +L+++Y+KCGSL +A  +F  M  +DVV W+SM
Sbjct: 421 LGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSM 480

Query: 372 ISAYGMSGQGYDAVALFSKMLM-SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           I+AYG+ G+G +A+ +F +M+  S + P+++ F+S+LSACSHAGL+EEG   F  M   Y
Sbjct: 481 IAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDY 540

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
           +L P  EHF  +VDLLGR G++ +A D+I +MP+     +WG+L+ AC ++ N+++G  A
Sbjct: 541 QLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAA 600

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           A ++F L P+ +GYY+LLSNIYA  G+W +V  +R  +  +G+KKM G S+
Sbjct: 601 AKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSM 651



 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 165/440 (37%), Positives = 253/440 (57%), Gaps = 34/440 (7%)

Query: 151  QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
            + H  +   GL Y+         MY     +  A  V  D+P+     WN M+ G+A +G
Sbjct: 738  KTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDG 797

Query: 211  RFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP------------------------ 246
            RF  +L++  +M    +KPD       L S    S                         
Sbjct: 798  RFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDA 857

Query: 247  ---------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297
                      ++ + + +F K+  ++LVSW  MI+ YA+N   +E +  +  M   G+ P
Sbjct: 858  ALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIP 917

Query: 298  NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
            N +S+ SVL ACG+L AL  G   H YV +   + ++ +  A++DMY+KCGSL  AR +F
Sbjct: 918  NRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLF 977

Query: 358  DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
            D+   +D+V W++MI++YG+ G G  A+ LF +M+ +G+ P  + F  VLSACSH+GLLE
Sbjct: 978  DETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLE 1037

Query: 418  EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            EG+ YF++MTE++ +  ++ ++AC+VDLLGRAG++ EA DLI+ MP+EP+  IWGSL+ A
Sbjct: 1038 EGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGA 1097

Query: 478  CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
            C +++N+D+    ADH+FHL P  +GY+VLLSNIYA   RW +V++VRK M  +G  K+ 
Sbjct: 1098 CRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQ 1157

Query: 538  GAS-VEMNDQVQIIALPLRS 556
            G S VE ++QV    +  RS
Sbjct: 1158 GFSLVEYDNQVHKFGVGDRS 1177



 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 147/482 (30%), Positives = 232/482 (48%), Gaps = 47/482 (9%)

Query: 36  DILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNV 95
           D+     + +++ +LH+Q+     LH +     KL   Y  C  +   R VFDE  + NV
Sbjct: 9   DLFQACNNGRSVSQLHSQVFKTGILH-DTFFATKLNSLYAKCASLQAARKVFDETPHPNV 67

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
             +N  +RSY     + + L ++  M    G  PD +T P  LKAC+G   L +G  IH 
Sbjct: 68  HLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHG 127

Query: 155 SVVK---VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
              K   +G D  +F G+ LV +Y KCG + EA +V  +    D V W SMV GY QN  
Sbjct: 128 FAKKNDEIGSD--MFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNND 185

Query: 212 FDEALDVCREM--------------------------------ESLRIKPDADTMASLLP 239
            +EAL +  +M                                  L I+ + D    L+ 
Sbjct: 186 PEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVN 245

Query: 240 SVTN----TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
           S+ N    T  E + +   +F K+  K+++SW+ MIA YANN    EA++L+ +M     
Sbjct: 246 SLLNLYAKTGCEKIAA--NLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRF 303

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
           EPN+++V S L AC     L  G+KIH+    K  + +  +  AL+DMY KC    EA  
Sbjct: 304 EPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVD 363

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           +F ++  +DVVSW +++S Y  +G  Y ++ +F  ML  G+ PD++A V +L+A S  G+
Sbjct: 364 LFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGI 423

Query: 416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
            ++       +         +   A L++L  + G + +A  L K M +  +  IW S++
Sbjct: 424 FQQALCLHGYVVRS-GFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMI 481

Query: 476 AA 477
           AA
Sbjct: 482 AA 483



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 175/364 (48%), Gaps = 38/364 (10%)

Query: 47   LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
            LKK HA+I     L  +  I  K    Y +  ++     VF++I N     +NV+IR + 
Sbjct: 736  LKKTHAKIFA-YGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFA 794

Query: 107  NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
             +  +  +L +Y  M   G  PD + +P  LK+C+G + L  G  IH  +V  G   +LF
Sbjct: 795  TDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLF 854

Query: 167  NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
                LV MY KCG ++ AR V + M  +D+V+W SM++GYA NG   E L     M S  
Sbjct: 855  VDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSG 914

Query: 227  IKPDADTMASLLPS----------------VTNTSPE-NVL---SVKEMFLK---LD--- 260
            + P+  ++ S+L +                V  T  E ++L   ++ +M+ K   LD   
Sbjct: 915  VIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLAR 974

Query: 261  -------NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
                    K+LV W+ MIA Y  +    +A+DL+ QM   G+ P+ ++   VL AC   S
Sbjct: 975  CLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSH-S 1033

Query: 314  ALLLGRKIHRYVERKKLQPNLRLEN--ALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTS 370
             LL   K++  +  ++     +L N   +VD+  + G L+EA  + + M  + D   W S
Sbjct: 1034 GLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGS 1093

Query: 371  MISA 374
            ++ A
Sbjct: 1094 LLGA 1097



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 136/286 (47%), Gaps = 17/286 (5%)

Query: 47   LKKLHAQIIINQHL-----HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
            L  L    +I+QHL      ++  +   L+  Y  CG +   R VFD++  +++V +  +
Sbjct: 831  LSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSM 890

Query: 102  IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
            I  Y +N    + L  +  M   G  P+  +   VL AC    +L  G   H  V++ G 
Sbjct: 891  ISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGF 950

Query: 162  DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
            ++++     ++ MY KCG L  AR + ++   KD+V W++M+A Y  +G   +A+D+  +
Sbjct: 951  EFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQ 1010

Query: 222  MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV------SWNVMIAVYA 275
            M    ++P   T   +L + +++    +L   +M+ +L  +  V      ++  M+ +  
Sbjct: 1011 MVKAGVRPSHVTFTCVLSACSHS---GLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLG 1067

Query: 276  NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
                 +EAVDL   M V   EP+A    S+L AC   + L L  KI
Sbjct: 1068 RAGQLSEAVDLIENMPV---EPDASIWGSLLGACRIHNNLDLAEKI 1110



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 26/183 (14%)

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
           P    +S     +K H  +    LQ + R+      MY     +  A  VF+ +      
Sbjct: 725 PGTDTISCFSCLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSF 784

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
            W  MI  +   G+   ++ L+SKM+  GL PD  AF   L +C+    L+ G+      
Sbjct: 785 LWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIH--- 841

Query: 427 TEQYKLVPRIEHFAC------------LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
                     +H  C            LVD+  + G +E A  +  +M +  +   W S+
Sbjct: 842 ----------QHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVR-DLVSWTSM 890

Query: 475 VAA 477
           ++ 
Sbjct: 891 ISG 893


>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 175/520 (33%), Positives = 285/520 (54%), Gaps = 39/520 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++K  +++HA ++      S    G  L+  Y ACG +   R VFDE+    +V + ++I
Sbjct: 106 EVKEGEEVHASVVRTGFACSEFVSG-ALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLII 164

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
           R+YV       AL +++ M   G  PD      V+ AC     L V   +HC + K G++
Sbjct: 165 RAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIE 224

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            + F  + L++ YG+CG L  A R   + P K++V WN+M+    ++   +         
Sbjct: 225 VDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELG------- 277

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                                         K++F  + ++++VSWN MI  +A      E
Sbjct: 278 ------------------------------KQLFQSMPDRDVVSWNSMIGGFARIGQYQE 307

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A+  + +ME  G+ PNA+++ S L AC    AL  G  IH YV++  +  +  L+++L+D
Sbjct: 308 ALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLID 367

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MY+KCG + +A  +F++   +D+ +WTS++    M G+G  A+  FSKM  + + PD + 
Sbjct: 368 MYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVT 427

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
            V VLSAC+HAGLL++G +YF+ M + + LVP++EH+ C+VDLLGR G ++EAYDLI  M
Sbjct: 428 MVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGM 487

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
           PME NE IWG+ ++AC +++N+++G +AA  +  L P      V+LSN+YA+  +W    
Sbjct: 488 PMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLDPRDPWARVMLSNMYAEEAKWDRSM 547

Query: 523 RVRKFMNSKGIKKMPG-ASVEMNDQVQIIALPLRSSKCLT 561
            +RK +  KG+KK PG +S+E+N  V    +   S  C T
Sbjct: 548 GLRKEIKKKGLKKSPGCSSIEVNGSVHGFLVGDNSHPCYT 587


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 161/505 (31%), Positives = 272/505 (53%), Gaps = 40/505 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LHAQ+I +     +P +   ++  Y  CG   + R VF  + ++N V + VLI  ++ 
Sbjct: 314 KQLHAQVIRSLPC-IDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQ 372

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
              + ++L ++  M       D +    ++  CS    + +  Q+H   +K G    +  
Sbjct: 373 YGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVI 432

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L++MY KCG L+ A  + + M  +D+V+W  M+  Y+Q G                 
Sbjct: 433 SNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVG----------------- 475

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
                               N+   +E F  +  +N+++WN M+  Y  +    + + +Y
Sbjct: 476 --------------------NIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMY 515

Query: 288 LQMEVH-GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
             M     + P+ ++  ++   C D+ A  LG +I  +  +  L  +  + NA++ MY+K
Sbjct: 516 SAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSK 575

Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
           CG ++EAR +FD +  +D+VSW +MI+ Y   G G  A+ +F  ML  G  PD I++V+V
Sbjct: 576 CGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAV 635

Query: 407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP 466
           LS+CSH+GL++EG++YF ++   + + P +EHF+C+VDLL RAG + EA +LI +MPM+P
Sbjct: 636 LSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKP 695

Query: 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526
              +WG+L++AC  + N ++  LAA H+F L    SG Y+LL+ IYA AG+  D  +VRK
Sbjct: 696 TAEVWGALLSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRK 755

Query: 527 FMNSKGIKKMPGAS-VEMNDQVQII 550
            M  KGIKK PG S +E+ ++V + 
Sbjct: 756 LMRDKGIKKNPGYSWMEVKNKVHVF 780



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 162/344 (47%), Gaps = 38/344 (11%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD-P 128
           +M  Y   G + D   +F  +  ++V  +N L+  Y  +  + DA+  + +M   G   P
Sbjct: 101 MMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLP 160

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           + +T+ C +K+C       V LQ+   + K G   +     G+V M+ +CG +  A +  
Sbjct: 161 NAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQF 220

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
           + +    V   NSM+AGYA++   D AL                                
Sbjct: 221 SQIERPTVFCRNSMLAGYAKSYGVDHAL-------------------------------- 248

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
                E+F  +  +++VSWN+M++  + +    EA+ + + M   G+  ++ +  S L A
Sbjct: 249 -----ELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTA 303

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  LS+L  G+++H  V R     +  + +A+V++YAKCG   EAR VF  +R ++ VSW
Sbjct: 304 CAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSW 363

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           T +I  +   G   +++ LF++M    +  D  A  +++S CS+
Sbjct: 364 TVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSN 407



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 160/380 (42%), Gaps = 76/380 (20%)

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL-NDMPSKD 195
           L++C    +L     +H  +V VGL   +F  N L+  Y  CG L +AR +L  D+   +
Sbjct: 35  LRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPN 94

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM 255
           V+T N M+ GYA+ G   +A                                     +E+
Sbjct: 95  VITHNIMMNGYAKLGSLSDA-------------------------------------EEL 117

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE-PNAISVASVLPACGDLSA 314
           F ++  +++ SWN +++ Y  +    +A++ ++ M   G   PNA +    + +CG L  
Sbjct: 118 FGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGW 177

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT----------------------- 351
             +  ++   + +   Q +  +   +VDM+ +CG++                        
Sbjct: 178 HEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAG 237

Query: 352 --------EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
                    A  +F+ M  +DVVSW  M+SA   SG+  +A+++   M   G+  DS  +
Sbjct: 238 YAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTY 297

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQ 461
            S L+AC+    L  G+   ++  +  + +P I+ +  + +V+L  + G  +EA  +   
Sbjct: 298 TSSLTACAKLSSLGWGK---QLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSS 354

Query: 462 MPMEPNERIWGSLVAACCLY 481
           +  + N   W  L+     Y
Sbjct: 355 LR-DRNTVSWTVLIGGFLQY 373



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 101/207 (48%), Gaps = 10/207 (4%)

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
           +PN+   N +++ YAK GSL++A  +F +M  +DV SW +++S Y  SG+  DA+  F  
Sbjct: 92  EPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVS 151

Query: 391 MLMSG-LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE-QYKLVPRIEHFACLVDLLGR 448
           M  SG   P++  F   + +C   G  E       ++T+  ++  P +     +VD+  R
Sbjct: 152 MRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVA--TGIVDMFVR 209

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY-YVL 507
            G V+ A     Q+   P      S++A    Y+    G+  A  +F   P +    + +
Sbjct: 210 CGAVDFASKQFSQIE-RPTVFCRNSMLAG---YAK-SYGVDHALELFESMPERDVVSWNM 264

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIK 534
           + +  +++GR  +   V   M+++G++
Sbjct: 265 MVSALSQSGRAREALSVAVDMHNRGVR 291


>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
 gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 192/563 (34%), Positives = 306/563 (54%), Gaps = 70/563 (12%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRT---YGAC-GQMVDTRHVFDEITNKNVVFFN 99
           +K  K++HA I+I+   H  P +  +++ +   Y A   Q V +  V     + +   + 
Sbjct: 17  VKQAKQVHALILIHGLSHLEPILARQILLSASNYSATVAQYVHS--VLHHSKSPDSFSWA 74

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
             IR    +  + +A  +Y  M   G  P  +     LKAC+     + GL IH  V K 
Sbjct: 75  CAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQVQKF 134

Query: 160 GL----------------------------------DYNLFNGNGLVAMYGKCGCLKEAR 185
           G                                   + N+ + N ++A Y K G L  A+
Sbjct: 135 GFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQ 194

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP------------DADT 233
           RV +++P KDV++WNSM++GYA+ G  ++AL + ++M                   D D+
Sbjct: 195 RVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDS 254

Query: 234 MASL---LPSVTNTSP----------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
             S    +P   N S            +V S  E+F ++  K+L+ +N MIA YA NS P
Sbjct: 255 ARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRP 314

Query: 281 AEAVDLYLQM---EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
            EA+ L+  M   +V+ ++P+ +++ASV+ AC  L  L  G  I  Y+ R  ++ +  L 
Sbjct: 315 KEALKLFNNMLNPDVN-VQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLA 373

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
            AL+D+YAKCGS+ +A  +F  +R +D+V++T+MI   G++G+  DA+ LF +M+ + + 
Sbjct: 374 TALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIF 433

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
           P+SI F+ +L+A +HAGL+EEG + F  M ++Y LVP ++H+  +VDL GRAG+++EA +
Sbjct: 434 PNSITFIGLLTAYNHAGLVEEGYHCFTSM-KKYNLVPSVDHYGIMVDLFGRAGRLQEALE 492

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
           LIK MPM+P+  +WG+L+ AC L++N++ G +AA H F L P+ +GY  LLSNIYA   R
Sbjct: 493 LIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYCSLLSNIYASGER 552

Query: 518 WGDVKRVRKFMNSKGIKKMPGAS 540
           W DVKR+RK    KG  K+PG S
Sbjct: 553 WDDVKRLRKVTKEKGFSKIPGCS 575


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 182/546 (33%), Positives = 294/546 (53%), Gaps = 42/546 (7%)

Query: 35  NDILDKYPDIKTLK---KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
           N +L+     ++LK   ++H QIIIN +  S P +   L+  Y  CG +     +F  IT
Sbjct: 146 NHLLNTAIQTRSLKHATQIHTQIIINNYT-SLPFLFNNLINLYAKCGCLNQALLLFS-IT 203

Query: 92  N---KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLV 148
           +   K +V +  LI    +  ++  AL ++  M   G  P+ +T+  +L A + +  +L 
Sbjct: 204 HHHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLH 263

Query: 149 GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
           G Q+H  + K G D N+F G  LV MY KC  +  A RV + MP +++V+WNSM+ G+  
Sbjct: 264 GQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFH 323

Query: 209 NGRFDEALDVCRE-MESLRIKPDADTMASLLPSVTNTSPEN------------------- 248
           N  +D A+ V ++ +    + P+  +++S+L +  N    N                   
Sbjct: 324 NNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTY 383

Query: 249 -VLSVKEMFLK-------------LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
            + S+ +M+ K             + ++++V+WNV++  +  N    EA + +  M   G
Sbjct: 384 VMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREG 443

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
           I P+  S ++VL +   L+AL  G  IH  + +     N+ +  +L+ MYAKCGSL +A 
Sbjct: 444 ILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAY 503

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            VF+ +   +V+SWT+MISAY + G     + LF  ML  G+ P  + FV VLSACSH G
Sbjct: 504 QVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTG 563

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
            +EEG  +F  M + + + P  EH+AC+VDLLGRAG ++EA   I+ MPM+P   +WG+L
Sbjct: 564 RVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGAL 623

Query: 475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534
           + AC  Y N+ +G  AA+ +F + P   G YVLL+N+  ++GR  +   VR+ M   G++
Sbjct: 624 LGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVR 683

Query: 535 KMPGAS 540
           K PG S
Sbjct: 684 KEPGCS 689


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 172/473 (36%), Positives = 256/473 (54%), Gaps = 42/473 (8%)

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
            R VF+ +       +N +I  YV+   + +AL + + M   G   D  TY  ++ AC+ 
Sbjct: 242 AREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACAN 301

Query: 143 SNSLLVGLQIHCSVVKVGLDYN----LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVT 198
             S  +G Q+H  ++K  L+ N    L   N L+ +Y K   + EAR++   MP ++++T
Sbjct: 302 VGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIIT 361

Query: 199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLK 258
           WN++++GY   GR +EA                                     K  F +
Sbjct: 362 WNAILSGYVNAGRMEEA-------------------------------------KSFFEE 384

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +  KNL++  VMI+  A N    E + L+ QM + G EP   + A  L AC  L AL  G
Sbjct: 385 MPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENG 444

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           R++H  +     + +L + NA++ MYAKCG +  A +VF  M   D+VSW SMI+A G  
Sbjct: 445 RQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQH 504

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           G G  A+ LF +ML  G+ PD I F++VL+ACSHAGL+E+GR+YF  M E Y + P  +H
Sbjct: 505 GHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDH 564

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
           +A +VDL  RAG    A  +I  MP +P   +W +L+A C ++ NMD+GI AA+ +F L 
Sbjct: 565 YARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLM 624

Query: 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           P   G YVLLSNIYA  GRW DV +VRK M  + ++K P  S +E+ ++V + 
Sbjct: 625 PQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVF 677



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 172/419 (41%), Gaps = 115/419 (27%)

Query: 171 LVAMYGKCGCLKEARRVLNDMP--SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           L+  Y   G L+  R + N  P   +D V +N+M+ GYA NG    AL++ R M     +
Sbjct: 85  LITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFR 144

Query: 229 PDADTMASLLPSV------------------------TNTSPENVL-------------- 250
           PD  T  S+L ++                         ++S  N L              
Sbjct: 145 PDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIP 204

Query: 251 -----SVKEMFLKLDNKNLVSWNVMIAVY----------------------ANNSMPA-- 281
                S +++F ++  ++ ++W  MI  Y                      A N+M +  
Sbjct: 205 CSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGY 264

Query: 282 -------EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN- 333
                  EA+ L  +M   GI+ + I+  +++ AC ++ +  +G+++H Y+ + +L PN 
Sbjct: 265 VHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNH 324

Query: 334 ---LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW---------------------- 368
              L + NAL+ +Y K   + EAR +F  M  +++++W                      
Sbjct: 325 SFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEE 384

Query: 369 ---------TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
                    T MIS    +G G + + LF +M + G  P   AF   L+ACS  G LE G
Sbjct: 385 MPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENG 444

Query: 420 R-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           R  + +++   Y+    + +   ++ +  + G VE A  +   MP   +   W S++AA
Sbjct: 445 RQLHAQLVHLGYESSLSVGN--AMISMYAKCGVVEAAESVFVTMP-SVDLVSWNSMIAA 500



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 138/308 (44%), Gaps = 25/308 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y   G+M + +  F+E+  KN++   V+I     N    + L ++K M + GF+P 
Sbjct: 365 ILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPC 424

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            + +   L ACS   +L  G Q+H  +V +G + +L  GN +++MY KCG ++ A  V  
Sbjct: 425 DFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFV 484

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            MPS D+V+WNSM+A   Q+G   +A+++  +M    + PD  T  ++L + ++      
Sbjct: 485 TMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAG---- 540

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMP---AEAVDLYLQMEVHGIEPNAISVASVL 306
                    L  K    +N M+  Y         A  VDL+ +  +       I      
Sbjct: 541 ---------LVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSK 591

Query: 307 PACGDLSALLLGRKIHRYVERK--------KLQP-NLRLENALVDMYAKCGSLTEARTVF 357
           P      ALL G +IH  ++          KL P N      L ++YA  G   +   V 
Sbjct: 592 PGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVR 651

Query: 358 DQMRCQDV 365
             MR Q V
Sbjct: 652 KLMRDQAV 659



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 95/198 (47%), Gaps = 9/198 (4%)

Query: 48  KKLHAQIIINQHL--HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           ++LHAQ++   HL   S+ S+G  ++  Y  CG +     VF  + + ++V +N +I + 
Sbjct: 445 RQLHAQLV---HLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAAL 501

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYN 164
             +     A+ ++  M   G  PD  T+  VL ACS +  +  G     S+++  G+   
Sbjct: 502 GQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPC 561

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREME 223
             +   +V ++ + G    AR V++ MPSK     W +++AG   +G  D  ++   ++ 
Sbjct: 562 EDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQL- 620

Query: 224 SLRIKPDADTMASLLPSV 241
             ++ P  D    LL ++
Sbjct: 621 -FKLMPQNDGTYVLLSNI 637



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 33/132 (25%)

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ----------- 359
           D ++  L R +H ++     +P     N L++MY K  ++  AR +F++           
Sbjct: 25  DPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTT 84

Query: 360 ----------------------MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
                                 +  +D V + +MI+ Y  +G G+ A+ LF  M      
Sbjct: 85  LITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFR 144

Query: 398 PDSIAFVSVLSA 409
           PD   F SVLSA
Sbjct: 145 PDDFTFTSVLSA 156


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 266/469 (56%), Gaps = 39/469 (8%)

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
            +FD I N N   +N ++R+Y+ +     AL +YK M  +   PD YTYP V++AC+   
Sbjct: 84  QIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRL 143

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
               G +IH  V+KVG D +++  N L+ MY  CG +++AR++ ++ P  D V+WNS++A
Sbjct: 144 LEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILA 203

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL 264
           GY + G      D+ + ME+ +                            +F ++D K++
Sbjct: 204 GYVKKG------DMGQVMEAWK----------------------------LFNEMDEKDM 229

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           VSW+ +I+ Y  N M  EA+ ++++M  +G+  + + V SVL AC  LS +  G+ IH  
Sbjct: 230 VSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGL 289

Query: 325 VERKKLQPNLRLENALV----DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
           V R  ++  + L+NAL+    DMY KCG +  A  VF+ M  + V SW ++I    ++G 
Sbjct: 290 VIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGL 349

Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA 440
              ++ +FS+M  +G+ P+ I F+ VL AC H GL++EGR +F  M E++ + P ++H+ 
Sbjct: 350 VERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYG 409

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500
           C+VDLLGRAG + EA  LI+ MPM P+   WG+L+ AC  + + ++G      +  L P+
Sbjct: 410 CMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPD 469

Query: 501 QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
             G++VLLSNI+A  G W DV  VR  M  +G+ K PG S +E N  V 
Sbjct: 470 HDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVH 518



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 151/313 (48%), Gaps = 15/313 (4%)

Query: 75  GACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYP 134
           G  GQ+++   +F+E+  K++V ++ LI  Y  N +Y +AL ++  M+ +G   D     
Sbjct: 209 GDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVV 268

Query: 135 CVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYG----KCGCLKEARRVLND 190
            VL AC+  + +  G  IH  V+++G++  +   N L+ MY     KCGC++ A  V N 
Sbjct: 269 SVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNG 328

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS--PEN 248
           M  K V +WN+++ G A NG  + +LD+  EM++  + P+  T   +L +  +     E 
Sbjct: 329 MEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEG 388

Query: 249 VLSVKEMFLKLD-NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                 M  K     N+  +  M+ +     +  EA  L   +E   + P+  +  ++L 
Sbjct: 389 RCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKL---IESMPMAPDVATWGALLG 445

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALV-DMYAKCGSLTEARTVFDQMRCQDVV 366
           AC       +G ++ R +   +LQP+    + L+ +++A  G   +   V   M+ Q VV
Sbjct: 446 ACKKHGDTEMGERVGRKL--IELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVV 503

Query: 367 S--WTSMISAYGM 377
                S+I A G+
Sbjct: 504 KTPGCSLIEANGV 516



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 107/220 (48%), Gaps = 11/220 (5%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG----ACGQMVDTRHVFDEITNKNVVFFN 99
           +KT K +H  ++I   + S  ++   L+  Y      CG + +   VF+ +  K V  +N
Sbjct: 280 VKTGKMIHG-LVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWN 338

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV-K 158
            LI     N L   +L ++  M  +G  P+  T+  VL AC     +  G     S++ K
Sbjct: 339 ALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEK 398

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALD 217
            G++ N+ +   +V + G+ G L EA +++  MP + DV TW +++    ++G  +    
Sbjct: 399 HGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGER 458

Query: 218 VCREMESLRIKPDADTMASLLPSV--TNTSPENVLSVKEM 255
           V R++  + ++PD D    LL ++  +    E+VL V+ M
Sbjct: 459 VGRKL--IELQPDHDGFHVLLSNIFASKGDWEDVLEVRGM 496


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 185/582 (31%), Positives = 310/582 (53%), Gaps = 48/582 (8%)

Query: 7   LCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSI 66
           +CR  S T P       T  TLL G  CND + +      + ++HA   +     +NP +
Sbjct: 136 MCRSSSCTLPDHV----TFTTLLPG--CNDAVPQ----NAVGQVHA-FAVKLGFDTNPFL 184

Query: 67  GLK--LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
            +   L+++Y    ++     +F+EI  K+ V FN LI  Y  + LY +++H++  M   
Sbjct: 185 TVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQS 244

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G  P  +T+  VLKA  G +   +G Q+H   V  G   +   GN ++  Y K   + E 
Sbjct: 245 GHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLET 304

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           R + ++MP  D V++N +++ Y+Q  +++ +L   REM+ +         A++L    N 
Sbjct: 305 RMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANL 364

Query: 245 S----------------PENVLSVK----------EMFLK-------LDNKNLVSWNVMI 271
           S                 +++L V           EMF +       L  +  VSW  +I
Sbjct: 365 SSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALI 424

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           + Y    +    + L+ +M    +  +  + A+VL A    ++LLLG+++H ++ R    
Sbjct: 425 SGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNL 484

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            N+   + LVDMYAKCGS+ +A  VF++M  ++ VSW ++ISA+  +G G  A+  F+KM
Sbjct: 485 ENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKM 544

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
           + SGL PDS++ + VL+ACSH G +E+G  YF+ M+  Y + P+ +H+AC++DLLGR G+
Sbjct: 545 IESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGR 604

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP-NQSGYYVLLSN 510
             EA  L+ +MP EP+E +W S++ AC ++ N  +   AA+ +F +     +  YV +SN
Sbjct: 605 FAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSN 664

Query: 511 IYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIA 551
           IYA AG W  V+ V+K M  +GIKK+P  S VE+N ++ + +
Sbjct: 665 IYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFS 706



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/504 (23%), Positives = 224/504 (44%), Gaps = 42/504 (8%)

Query: 11  FSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKL 70
           F  T+ V A ++ T +     D C         ++  +   A+ + ++  H N      +
Sbjct: 29  FLDTRRVDARIIKTGF---DTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTM 85

Query: 71  MRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM--SVHGFDP 128
           +  +   G +   R +FD + ++ VV + +L+  Y  N  + +A  +++ M  S     P
Sbjct: 86  ISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLP 145

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF--NGNGLVAMYGKCGCLKEARR 186
           D  T+  +L  C+ +       Q+H   VK+G D N F    N L+  Y +   L  A  
Sbjct: 146 DHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACV 205

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN--- 243
           +  ++P KD VT+N+++ GY ++G + E++ +  +M     +P   T + +L +V     
Sbjct: 206 LFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHD 265

Query: 244 ------------------------------TSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273
                                         +  + VL  + +F ++   + VS+NV+I+ 
Sbjct: 266 FALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISS 325

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           Y+       ++  + +M+  G +      A++L    +LS+L +GR++H           
Sbjct: 326 YSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSI 385

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
           L + N+LVDMYAKC    EA  +F  +  +  VSWT++IS Y   G     + LF+KM  
Sbjct: 386 LHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRG 445

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           S L  D   F +VL A +    L  G+     +     L   +   + LVD+  + G ++
Sbjct: 446 SNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNL-ENVFSGSGLVDMYAKCGSIK 504

Query: 454 EAYDLIKQMPMEPNERIWGSLVAA 477
           +A  + ++MP + N   W +L++A
Sbjct: 505 DAVQVFEEMP-DRNAVSWNALISA 527



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 119/269 (44%), Gaps = 41/269 (15%)

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
           + L   ++   ++K G D +    N +V    + G +  AR+V ++MP K+ V+ N+M++
Sbjct: 28  TFLDTRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMIS 87

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL 264
           G+ + G                                     +V S +++F  + ++ +
Sbjct: 88  GHVKTG-------------------------------------DVSSARDLFDAMPDRTV 110

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQM--EVHGIEPNAISVASVLPACGDLSALLLGRKIH 322
           V+W +++  YA NS   EA  L+ QM        P+ ++  ++LP C D        ++H
Sbjct: 111 VTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVH 170

Query: 323 RYVERKKLQPN--LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
            +  +     N  L + N L+  Y +   L  A  +F+++  +D V++ ++I+ Y   G 
Sbjct: 171 AFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGL 230

Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
             +++ LF KM  SG  P    F  VL A
Sbjct: 231 YTESIHLFLKMRQSGHQPSDFTFSGVLKA 259


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 186/551 (33%), Positives = 294/551 (53%), Gaps = 67/551 (12%)

Query: 64  PSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV 123
           P   +KL++T    G +    ++FD+I   ++  + +LI  +  +     A+ +Y  +  
Sbjct: 11  PCQSIKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLS 70

Query: 124 HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183
               PD +    V KAC+ S  L+V  +IH   ++ G + +L  GN L+ M+GKC  +  
Sbjct: 71  RNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNG 130

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--- 240
           AR V +DM  KDVV+W SM   Y   G   + + + REM    I+ ++ T++S+LP+   
Sbjct: 131 ARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACAD 190

Query: 241 ------------VTNTSPENV-------------LSVKEMFLKLD---NKNLVSWNVMIA 272
                       + N    NV             L +K+  L  D   ++++VSWNVM+ 
Sbjct: 191 YIKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLT 250

Query: 273 VYANNSMPAEAVDLYLQMEVHGIE-----------------------------------P 297
            Y  N      + L+ QM   GI+                                   P
Sbjct: 251 AYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKP 310

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           N I++ S LP C +L +L  G++IH YV R     ++ +  ALV +YAKCG L  +R VF
Sbjct: 311 NRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVF 370

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           + M  +DVV+W +MI A  M G+G +++ LF+KML SG+ P+S+ F+ VLS CSH+ L +
Sbjct: 371 NTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLAD 430

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           EG   F  M+ ++ + P  +H++C+VD+L RAG++EEAYD I++MP+EP    WG+L+ A
Sbjct: 431 EGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGA 490

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
           C +Y N+++G LAA  +F + P+ +G YVLLSNI   A +W +   +RK M  KG+ K P
Sbjct: 491 CRVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTP 550

Query: 538 GAS-VEMNDQV 547
           G S V++ ++V
Sbjct: 551 GRSWVQVKNKV 561


>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
          Length = 751

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 180/524 (34%), Positives = 288/524 (54%), Gaps = 17/524 (3%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSN-PSIGLKLMRTYGACGQMVDTRHVFDEITNKNV 95
           +L+K   +  LK+LH  +I    +    P   L     Y   G +   + VF++I   ++
Sbjct: 11  LLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSL 70

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
             +N +I+ Y  +    +AL +Y+ M   G+ PD +T+P VLKACS  N   +G  +H  
Sbjct: 71  YIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNC 130

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           +VK G + +++    L+ MY  CG ++ A +V +D+P  +VV W S++AG   N    EA
Sbjct: 131 IVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEA 190

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENV---LSVKEMFLKLD------NKNLVS 266
           + V ++ME   + P+  TM ++L +   +   N    +  +   + LD      N N++ 
Sbjct: 191 VRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVIL 250

Query: 267 WNVMIAVYANNS-----MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
              ++ +YA  +        EA+DL+  M + G +P+  +   V+ AC  L AL+ G+ +
Sbjct: 251 ATAIVDMYAKCAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQAL 310

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
           H YV +  L  +  +  ALVDMYAK G    A+ VF +++ +DV +WTS+I    M G G
Sbjct: 311 HAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHG 370

Query: 382 YDAVALFSKMLM-SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA 440
            +A+  F KM   + L PD I ++ VLSACSH G +E+G+ +F  M   + + P  +H+ 
Sbjct: 371 EEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYG 430

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500
           C+VDLL RAG++ EA  L+++MP+EPN  IW +L+  C +Y N+D+       +  L  +
Sbjct: 431 CMVDLLSRAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDVADRVRRRVRELEVD 490

Query: 501 QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEM 543
            SG YVLLSNIYA A RW +VK  R+ M  + I+K  G +SVEM
Sbjct: 491 GSGVYVLLSNIYAGACRWEEVKMARELMKERKIQKSLGHSSVEM 534


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 183/498 (36%), Positives = 283/498 (56%), Gaps = 32/498 (6%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVY-----KNM-SVHGFDPDC- 130
           G +   R +FDE+ +++ V +N +I  Y  N  + ++  ++     KN+ S +     C 
Sbjct: 61  GNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCI 120

Query: 131 ----------YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY------NLFNGNGLVAM 174
                     Y      +  +  N+++ GL  +  V +    +      N+ +   +V  
Sbjct: 121 EDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDG 180

Query: 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
           Y K G +++AR + N MP K+VV+W  M++GY +NG+FDEA ++  +M      PD + +
Sbjct: 181 YAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQM------PDKNIV 234

Query: 235 ASLLPSVTNTSPENVL-SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
           A +   +T    E      K +F ++  ++L SWN MI  YA N    EA+ L+ QM   
Sbjct: 235 A-MTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKM 293

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
           G++P+  ++ SVL AC  L++L  GRK H  V +   +  + + NAL+ MY KCGS+ ++
Sbjct: 294 GMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDS 353

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
              F Q+   DVVSW +MI+A+   G    A+A F +M  + + PD I F+S+LSAC HA
Sbjct: 354 ELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHA 413

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           G + E   +F  M E YK+VPR EHFACLVD+L R G+VE+AY +I++MP E +  IWG+
Sbjct: 414 GKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGA 473

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           L+AAC ++ N+ +G LAA  I  L P  SG YV+LSNIYA AG WG+V RVR  M  +G+
Sbjct: 474 LLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGV 533

Query: 534 KKMPGAS-VEMNDQVQII 550
           KK P  S +E++++V   
Sbjct: 534 KKQPAYSWMEIDNKVHFF 551



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 173/383 (45%), Gaps = 48/383 (12%)

Query: 130 CYTYPCVL-KACSGSNSLLVGL------QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
           C++ PC L ++ S   ++ + +      Q H   +K+    +++  N  +    + G + 
Sbjct: 5   CFSPPCFLPRSPSIIRTIFLPIFHSFNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIG 64

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
            AR++ ++MP +D V+WNS++ GY +NG FDE+  +   M +  +      +A  +    
Sbjct: 65  AARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIED-- 122

Query: 243 NTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
               E +    + F  +  +N  SWN MI+         EA  L+ +M       N IS 
Sbjct: 123 ----ERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMP----RRNVISY 174

Query: 303 ASVLPACGDLSALLLGRK----------------IHRYVERKKLQP-----------NLR 335
            +++     +  +   R                 I  YVE  K              N+ 
Sbjct: 175 TAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIV 234

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
              A++  Y K G   +A+ +FDQ+ C+D+ SW +MI+ Y  +G G +A+ L S+ML  G
Sbjct: 235 AMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMG 294

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           + PD    +SVL+ACS    L+EGR  +  ++   Y+   RI     L+ +  + G + +
Sbjct: 295 MQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYE--SRISICNALITMYCKCGSILD 352

Query: 455 AYDLIKQMPMEPNERIWGSLVAA 477
           +    +Q+   P+   W +++AA
Sbjct: 353 SELAFRQID-HPDVVSWNAMIAA 374



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 78/163 (47%), Gaps = 9/163 (5%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +K H  +++     S  SI   L+  Y  CG ++D+   F +I + +VV +N +I ++  
Sbjct: 319 RKTHV-LVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFAR 377

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF- 166
           +  Y  AL  +  M  +  +PD  T+  +L AC  +  +   L    S+++    Y +  
Sbjct: 378 HGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIE---SYKIVP 434

Query: 167 ---NGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAG 205
              +   LV +  + G +++A +++ +MP   D   W +++A 
Sbjct: 435 RPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAA 477


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 185/516 (35%), Positives = 283/516 (54%), Gaps = 58/516 (11%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD---TRHVFDEITNKNVVFFNV 100
           ++ LK+LHAQ+I    +  +P    +L+R + A     D    R +F  +   N   +N 
Sbjct: 24  MQDLKQLHAQMIKTAQIR-DPLAAAELLR-FSAVSDHRDLDYARKIFRSMHRPNCFSYNT 81

Query: 101 LIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
           LIR+   +    DAL V+  M      +P+C+T+P V KAC  +  L  G Q+H   VK 
Sbjct: 82  LIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKF 141

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEA-----RRVLND----------MPSKDVVTWNSMVA 204
           GLD + F  + +V MY  CG +++A     RRV  D              DVV WN M+ 
Sbjct: 142 GLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMID 201

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL 264
           GY + G  + A                                     + +F ++  +++
Sbjct: 202 GYVRIGELEVA-------------------------------------RNLFDEMPQRSV 224

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           VSWNVMIA YA +    EAV+++ +M++  + PN +++ SVLPA   L AL LG+ +H Y
Sbjct: 225 VSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLY 284

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
             R  +  +  L +AL+DMYAKCGS+ +A  VF+ +  ++VV+W+++I+   M G+  D 
Sbjct: 285 AVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDT 344

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           +  F  M  +G+ P  + ++ +LSACSHAGL+ EGR++F  M     L PRIEH+ C+VD
Sbjct: 345 LDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVD 404

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY 504
           LLGRAG +EE+ +LI  MP++P++ IW +L+ AC ++ N+++G   A+H+  LAP+ SG 
Sbjct: 405 LLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGS 464

Query: 505 YVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           YV LSNIYA  G W  V +VR  M    ++K PG S
Sbjct: 465 YVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCS 500


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 178/515 (34%), Positives = 276/515 (53%), Gaps = 36/515 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y   G +   R  FDE+   ++V +N LI +Y+ N  +      ++ M + G +P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
                  L AC+ +  + +G  I  +++  G++        LV+MYGK G   +A  V  
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
            M  +DVV W++MVA YA+NG   EAL + R+M+   + P+  T+ S L +         
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 180

Query: 241 -----------------VTNTSPEN-------VLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                            V  T+  N       + +  E F ++  KN+V+W+ + A YA 
Sbjct: 181 GALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYAR 240

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE--RKKLQPNL 334
           N    +A+ +  +M++ G+ PN+ +  SVL AC  ++AL  GR+IH   +     L+ ++
Sbjct: 241 NDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDV 300

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            +  ALV+MY+KCG+L  A  +FD++   D+V W S+I+     GQ   A+ LF +M + 
Sbjct: 301 YVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLE 360

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           GL P  I F SVL ACSHAG+L++GR +F      + + P  EHF C+VDLLGRAG + +
Sbjct: 361 GLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVD 420

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           + DL+  MP EP+   W + + AC  Y NMD  I AA+++F L P +   YVLLSN+YAK
Sbjct: 421 SEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMYAK 480

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           AGRW DV R+R+ M      K  G S +E+ D+V 
Sbjct: 481 AGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVH 515



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 157/357 (43%), Gaps = 37/357 (10%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           I+   +     +   L+  YG  G   D   VF  +++++VV ++ ++ +Y  N    +A
Sbjct: 87  ILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREA 146

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
           L +++ M + G  P+  T    L AC+    L  G  +H  V   G+   +  G  LV +
Sbjct: 147 LGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNL 206

Query: 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
           YGKCG ++ A      +  K+VV W+++ A YA+N R  +A+ V   M+   + P++ T 
Sbjct: 207 YGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTF 266

Query: 235 ASLLPSVTNTSP-----------------------------------ENVLSVKEMFLKL 259
            S+L +    +                                     N+    +MF K+
Sbjct: 267 VSVLDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKI 326

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
            + +LV WN +IA  A +    +A++L+ +M + G++P  I+  SVL AC     L  GR
Sbjct: 327 AHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGR 386

Query: 320 K-IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
           K    ++    + P       +VD+  + G + ++  +   M  +   V+W + + A
Sbjct: 387 KHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGA 443



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 159/349 (45%), Gaps = 37/349 (10%)

Query: 21  VLSTQYTLLSG-DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQ 79
           V   + TL+SG DAC  +     D+++   +H Q +  Q + S   +G  L+  YG CG+
Sbjct: 158 VAPNKVTLVSGLDACASL----GDLRSGALMH-QRVEAQGIQSGVVVGTALVNLYGKCGR 212

Query: 80  MVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA 139
           +      F +I  KNVV ++ +  +Y  N    DA+ V   M + G  P+  T+  VL A
Sbjct: 213 IEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDA 272

Query: 140 CSGSNSLLVGLQIH--CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
           C+   +L  G +IH    V+  GL+ +++    LV MY KCG L  A  + + +   D+V
Sbjct: 273 CAAIAALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLV 332

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
            WNS++A  AQ+G+ ++AL++   M    ++P   T  S+L + ++             L
Sbjct: 333 LWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAG----------ML 382

Query: 258 KLDNKNLVS-------------WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
               K+ VS             +  M+ +        ++ DL L M     EP+ ++  +
Sbjct: 383 DQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMP---FEPHPVAWMA 439

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV-DMYAKCGSLTE 352
            L AC       + R I       +L P  R    L+ +MYAK G  ++
Sbjct: 440 FLGACRTYRN--MDRAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSD 486


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 172/504 (34%), Positives = 267/504 (52%), Gaps = 33/504 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G +   R VF+ I  +NVV +  ++   V N    D L ++  M      P 
Sbjct: 173 LVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPS 232

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            YT   V+ ACS    L  G  +H SV+K GL  N F    L+ MY KCG L++A+ V +
Sbjct: 233 EYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFD 292

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
           ++   D+V W +M+ GY QNG   +AL +  + +   I P++ T+A++L +         
Sbjct: 293 ELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSL 352

Query: 241 -------------VTNTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYAN 276
                        V  T   N L               +F  + NK++V+WN M++ YA 
Sbjct: 353 GRSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAE 412

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N+M  +A+ L+ QM + G  P+AISV   L A   L  LL+G+  H Y  +     N+ +
Sbjct: 413 NNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVKHAFLSNIYV 472

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
             AL+++Y KCG L  AR VFD+M  ++ V+W +MI  YGM G    ++ LF +ML  G+
Sbjct: 473 STALLNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGV 532

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P+ +AF S+LS CSH G++   + YF  M + + + P ++H+AC+VD+L RAG +EEA 
Sbjct: 533 HPNDVAFTSILSTCSHTGMVTAAKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEEAL 592

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           + I  MPM+ +  +WG+ +  C L+S +  G  A   +  L P +   YVL+SN+Y   G
Sbjct: 593 EFIDNMPMQADTSVWGAFLHGCELHSRLQFGEEAIKRMMVLHPERPDLYVLISNLYTSNG 652

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS 540
            W   + +R++M  KG+ K+PG S
Sbjct: 653 MWEKSQAIRRWMQEKGLVKLPGYS 676



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 139/486 (28%), Positives = 230/486 (47%), Gaps = 44/486 (9%)

Query: 33  ACNDILDKYPDIKTL---KKLHAQIIINQH--LHSNPSIGLKLMRTYGACGQMVDTRHVF 87
           +  D+L   P   TL   + LHA+++ +    L  +     KL+  Y A G +   R VF
Sbjct: 28  SAGDLLRLLPSCGTLPSLRVLHARLLTHTQGLLLGSLRARTKLLSCYAALGDLASARMVF 87

Query: 88  DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP---DCYTYPCVLKACSGSN 144
           D     +   + V++   V    + +A+ ++++M      P   D +     LKAC  S 
Sbjct: 88  DGTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQDDFVLSLALKACIRSA 147

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
               G ++HC  VKVG   + F  N LV MY K G L+ AR+V   +P ++VV+W SM++
Sbjct: 148 DYGYGTRLHCDAVKVG-GADGFVMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLS 206

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT-------------NTSPENVLS 251
           G  QNG   + L +  +M    + P   T+A+++ + +             +   + ++S
Sbjct: 207 GCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMS 266

Query: 252 -------VKEMFLK-------------LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
                  + +M++K             L   +LV W  MI  Y  N  P +A+ L+L  +
Sbjct: 267 NSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKK 326

Query: 292 VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351
              I PN++++A+VL A   L  L LGR IH    +  L     + NALVDMYAKC +++
Sbjct: 327 FANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVS 386

Query: 352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
           EA  +F  +  +DVV+W SM+S Y  +    DA+ LF +M + G  PD+I+ V  LSA  
Sbjct: 387 EANRIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSASV 446

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIW 471
             G L  G+  F     ++  +  I     L++L  + G +  A  +  +M  + N   W
Sbjct: 447 CLGDLLIGK-SFHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRVFDEMN-DRNSVTW 504

Query: 472 GSLVAA 477
            +++  
Sbjct: 505 CAMIGG 510



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 185/411 (45%), Gaps = 38/411 (9%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           +I Q L SN  I   L+  Y  CG++ D + VFDE++  ++V +  +I  Y  N    DA
Sbjct: 259 VIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDA 318

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
           L ++ +       P+  T   VL A +    L +G  IH   VK+GL       N LV M
Sbjct: 319 LRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGLVEYTVVVNALVDM 378

Query: 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
           Y KC  + EA R+   + +KDVV WNSM++GYA+N   ++AL + ++M      PDA ++
Sbjct: 379 YAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKGPSPDAISV 438

Query: 235 ASLLPS----------------------VTNTSPENVL-----------SVKEMFLKLDN 261
              L +                      ++N      L           S + +F ++++
Sbjct: 439 VHALSASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRVFDEMND 498

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK- 320
           +N V+W  MI  Y      A ++DL+ +M   G+ PN ++  S+L  C     +   ++ 
Sbjct: 499 RNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSILSTCSHTGMVTAAKRY 558

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSG 379
                +   + P+++    +VD+ A+ G+L EA    D M  Q D   W + +    +  
Sbjct: 559 FDSMAQHFNITPSMKHYACMVDVLARAGNLEEALEFIDNMPMQADTSVWGAFLHGCELHS 618

Query: 380 Q-GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           +  +   A+   M++    PD    +S L   +  G+ E+ +   + M E+
Sbjct: 619 RLQFGEEAIKRMMVLHPERPDLYVLISNLYTSN--GMWEKSQAIRRWMQEK 667



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 82/191 (42%), Gaps = 4/191 (2%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   K  H   + +  L SN  +   L+  Y  CG +   R VFDE+ ++N V +  +I
Sbjct: 450 DLLIGKSFHGYAVKHAFL-SNIYVSTALLNLYNKCGDLPSARRVFDEMNDRNSVTWCAMI 508

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGL 161
             Y        ++ ++  M   G  P+   +  +L  CS +  +    +   S+ +   +
Sbjct: 509 GGYGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSILSTCSHTGMVTAAKRYFDSMAQHFNI 568

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCR 220
             ++ +   +V +  + G L+EA   +++MP + D   W + + G   + R     +  +
Sbjct: 569 TPSMKHYACMVDVLARAGNLEEALEFIDNMPMQADTSVWGAFLHGCELHSRLQFGEEAIK 628

Query: 221 EMESLRI-KPD 230
            M  L   +PD
Sbjct: 629 RMMVLHPERPD 639



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 16/182 (8%)

Query: 305 VLPACGDLSALLLGRKIH-RYVERKK--LQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           +LP+CG L +L   R +H R +   +  L  +LR    L+  YA  G L  AR VFD   
Sbjct: 35  LLPSCGTLPSL---RVLHARLLTHTQGLLLGSLRARTKLLSCYAALGDLASARMVFDGTP 91

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP---DSIAFVSVLSACSHAGLLEE 418
             D  S+  M+     + +  +AVAL   M     CP   D       L AC  +    +
Sbjct: 92  RPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQDDFVLSLALKACIRSA---D 148

Query: 419 GRYYFKIMTEQYKLVPRIEHFA--CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
             Y  ++  +  K V   + F    LVD+  +AG +E A  + +++P   N   W S+++
Sbjct: 149 YGYGTRLHCDAVK-VGGADGFVMNSLVDMYAKAGDLECARKVFERIPGR-NVVSWTSMLS 206

Query: 477 AC 478
            C
Sbjct: 207 GC 208


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 171/473 (36%), Positives = 256/473 (54%), Gaps = 42/473 (8%)

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
            R VF+ +       +N +I  YV+   + +AL + + M   G   D  TY  ++ AC+ 
Sbjct: 242 AREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACAN 301

Query: 143 SNSLLVGLQIHCSVVKVGLDYN----LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVT 198
             S  +G Q+H  ++K  L+ N    L   N L+ +Y K   + EAR++   MP ++++T
Sbjct: 302 VGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIIT 361

Query: 199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLK 258
           WN++++GY   GR +EA                                     K  F +
Sbjct: 362 WNAILSGYVNAGRMEEA-------------------------------------KSFFEE 384

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +  KNL++  VMI+  A N    E + L+ QM + G EP   + A  L AC  L AL  G
Sbjct: 385 MPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENG 444

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           R++H  +     + +L + NA++ MYAKCG +  A +VF  M   D+VSW SMI+A G  
Sbjct: 445 RQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQH 504

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           G G  A+ LF +ML  G+ PD I F++VL+ACSHAGL+E+GR+YF  M E Y + P  +H
Sbjct: 505 GHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDH 564

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
           +A +VDL  RAG    A  +I  MP +P   +W +L+A C ++ NMD+GI AA+ +F L 
Sbjct: 565 YARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLM 624

Query: 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           P   G YVLLSNIYA  GRW +V +VRK M  + ++K P  S +E+ ++V + 
Sbjct: 625 PQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVF 677



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 108/476 (22%), Positives = 193/476 (40%), Gaps = 119/476 (25%)

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           A  V+ +M   GF P  +    +L+    S++L+   Q+   +     + +      L+ 
Sbjct: 32  ARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIP----NPDAIARTTLIT 87

Query: 174 MYGKCGCLKEARRVLNDMP--SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA 231
            Y   G L+  R + N  P   +D V +N+M+ GYA NG    AL++ R M     +PD 
Sbjct: 88  AYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDD 147

Query: 232 DTMASLL-----------------------------PSVTNT--------------SPEN 248
            T  S+L                              SV N               S   
Sbjct: 148 FTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSA 207

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVY----------------------ANNSMPA----- 281
           ++S +++F ++  ++ ++W  MI  Y                      A N+M +     
Sbjct: 208 MVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHC 267

Query: 282 ----EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN---- 333
               EA+ L  +M   GI+ + I+  +++ AC ++ +  +G+++H Y+ + +L PN    
Sbjct: 268 GCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFC 327

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW------------------------- 368
           L + NAL+ +Y K   + EAR +F  M  +++++W                         
Sbjct: 328 LSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPV 387

Query: 369 ------TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR-Y 421
                 T MIS    +G G + + LF +M + G  P   AF   L+ACS  G LE GR  
Sbjct: 388 KNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQL 447

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           + +++   Y+    + +   ++ +  + G VE A  +   MP   +   W S++AA
Sbjct: 448 HAQLVHLGYESSLSVGN--AMISMYAKCGVVEAAESVFVTMP-SVDLVSWNSMIAA 500



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 138/308 (44%), Gaps = 25/308 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y   G+M + +  F+E+  KN++   V+I     N    + L ++K M + GF+P 
Sbjct: 365 ILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPC 424

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            + +   L ACS   +L  G Q+H  +V +G + +L  GN +++MY KCG ++ A  V  
Sbjct: 425 DFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFV 484

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            MPS D+V+WNSM+A   Q+G   +A+++  +M    + PD  T  ++L + ++      
Sbjct: 485 TMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAG---- 540

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMP---AEAVDLYLQMEVHGIEPNAISVASVL 306
                    L  K    +N M+  Y         A  VDL+ +  +       I      
Sbjct: 541 ---------LVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSK 591

Query: 307 PACGDLSALLLGRKIHRYVERK--------KLQP-NLRLENALVDMYAKCGSLTEARTVF 357
           P      ALL G +IH  ++          KL P N      L ++YA  G   E   V 
Sbjct: 592 PGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVR 651

Query: 358 DQMRCQDV 365
             MR Q V
Sbjct: 652 KLMRDQAV 659



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 95/198 (47%), Gaps = 9/198 (4%)

Query: 48  KKLHAQIIINQHL--HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           ++LHAQ++   HL   S+ S+G  ++  Y  CG +     VF  + + ++V +N +I + 
Sbjct: 445 RQLHAQLV---HLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAAL 501

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYN 164
             +     A+ ++  M   G  PD  T+  VL ACS +  +  G     S+++  G+   
Sbjct: 502 GQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPC 561

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREME 223
             +   +V ++ + G    AR V++ MPSK     W +++AG   +G  D  ++   ++ 
Sbjct: 562 EDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQL- 620

Query: 224 SLRIKPDADTMASLLPSV 241
             ++ P  D    LL ++
Sbjct: 621 -FKLMPQNDGTYVLLSNI 637



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 33/132 (25%)

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ----------- 359
           D ++  L R +H ++     +P     N L++MY K  +L  AR +F++           
Sbjct: 25  DPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTT 84

Query: 360 ----------------------MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
                                 +  +D V + +MI+ Y  +G G+ A+ LF  M      
Sbjct: 85  LITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFR 144

Query: 398 PDSIAFVSVLSA 409
           PD   F SVLSA
Sbjct: 145 PDDFTFTSVLSA 156


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 175/515 (33%), Positives = 272/515 (52%), Gaps = 40/515 (7%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPS-IGLKLMRTYGACGQMVDTRHVFDEITNKNV 95
           +L K   ++ LK++H + +    L S    +  KL+ TY   G  VD + VF+ I N ++
Sbjct: 9   LLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDI 68

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
           V +  LI  Y++      A  ++ ++   G  PD +     + AC     L  G  +H  
Sbjct: 69  VSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGM 128

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           V +  L  +   GN L+ MY + G ++ A  V   M  KDV +W S++ G+ +       
Sbjct: 129 VFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIK------- 181

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
              C ++E+ R                            +F ++  +N VSW  MI  Y 
Sbjct: 182 ---CNDIEAAR---------------------------RIFDEMPMRNSVSWTAMITGYV 211

Query: 276 NNSMPAEAVDLYLQMEVHGIE-PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
              +P   ++L+ +M   G + P  I++ +VL  C D+ A  LG  +H YV +  L  ++
Sbjct: 212 QGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDV 271

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + NAL+DMYAK G+L  A  +F +M  +DV SWT+MIS   + G+G  A+  FS M  S
Sbjct: 272 TVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKS 331

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           G+ P+ +  +SVLSACSHAGL+ EGR  F+ M + + + P+I+H+ C+VDLLGRAG + E
Sbjct: 332 GVVPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLRE 391

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A +LI+ MP++P+  IW SL++AC ++ N+ +  +A   I  L P+  G Y+LL NIY  
Sbjct: 392 AKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCS 451

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           A RW D  + RK M  + +KK PG S VE+N  V 
Sbjct: 452 ASRWEDALKARKAMRDRRVKKKPGCSWVEVNGVVH 486


>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
          Length = 565

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 190/563 (33%), Positives = 293/563 (52%), Gaps = 51/563 (9%)

Query: 26  YTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSN--PSIGLKLMRTYGACGQMVDT 83
           YT+LS       L+K   +K LK++H+ ++I   +  N  P   L         G +   
Sbjct: 6   YTILS------FLEKCKTMKELKQIHS-LMIKTSVVKNIIPCSRLIDFCANSELGDIEYA 58

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
           R VFD+     V  +N +I+ Y N    + AL +Y+ M   GF PD +T+P VLK CS  
Sbjct: 59  RTVFDQTDQLTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAI 118

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
           + L+ G  +H  +VK G + +++  + L+ MY  CG L    +V   +P  +VV W S++
Sbjct: 119 DLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLI 178

Query: 204 AGYAQNGRFDEALDVCREMESLRIKP----------------DADT---------MASLL 238
           AG+  N +  EAL + ++ME+  ++P                D  T            L 
Sbjct: 179 AGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVRYRLRQLGLD 238

Query: 239 PSVTNTSPENVL---------------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
           P  TN+    +L               + + +F K+  +NLV WN MI+ ++     AEA
Sbjct: 239 PFHTNSRFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEA 298

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
           + L++ ME+ G  PN  +  SV+ AC  L     G+ +H  V +      + +  AL+DM
Sbjct: 299 LRLFVDMELAGFVPNKATFLSVIRACTHLRFRSTGQSLHARVLKANFHEFVAIGTALMDM 358

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG-LCPDSIA 402
           YAK G    A  +F ++R +DV++WT+MIS   + G+G +A+ +F +M     + PD I 
Sbjct: 359 YAKSGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQIT 418

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           +++VL ACSH GL+EEG+ +F  M E Y + P +EH+ C++DLL RAG  EEA +L+ +M
Sbjct: 419 YIAVLWACSHLGLVEEGQKHFTSMMEVYGIEPTMEHYGCMIDLLSRAGHSEEAEELLVKM 478

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
           P +PN  I  S++  C +Y N+ +      HI  L  + SG YVLLSNI+AKA  W ++K
Sbjct: 479 PTQPNATILSSILNGCEMYGNVGLANRVKSHIVELKNSSSGVYVLLSNIHAKACNWEEMK 538

Query: 523 RVRKFMNSKGIKKMPGAS-VEMN 544
             R  +  K I K  G S VEMN
Sbjct: 539 LARDILKHKKIGKTLGNSFVEMN 561


>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
          Length = 505

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 152/381 (39%), Positives = 235/381 (61%), Gaps = 38/381 (9%)

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           + LV +Y  CG + +AR V ++M  +DVV WN M+AGY + G  D+A             
Sbjct: 117 SSLVQLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAG--DQA------------- 161

Query: 229 PDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
                                   +E+F  +  +N+VSW  +I  YA    P +AV+++ 
Sbjct: 162 ----------------------HARELFDAMPERNVVSWTTVIGGYAQMKRPEKAVEVFR 199

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           +M+V GIE + +++ SVL ACGDL A+ LG  +HR+V R+ L   + L N+++DMY KCG
Sbjct: 200 RMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRGLCQEIPLMNSIIDMYMKCG 259

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
            + +A  VF+ M  + VV+WT++I+ + + G G  AV +F +M    + P+++ F+++LS
Sbjct: 260 CIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFCRMERENMAPNAVTFLAILS 319

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
           ACSH GL + GR+YF IM  QY++ PR+EH+ C+VDLLGRAG ++EA DL+K MP++ N 
Sbjct: 320 ACSHVGLTDLGRWYFNIMVSQYRIKPRVEHYGCMVDLLGRAGCLKEAQDLVKNMPLKANA 379

Query: 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
            IWG+L+AA   + +  +G  A  H+  L PN SG Y+LLSNI+A+  RWGDV ++RK M
Sbjct: 380 AIWGALLAAARTHGDAGLGEQALLHLIELEPNNSGNYILLSNIFAEQERWGDVSKLRKAM 439

Query: 529 NSKGIKKMPGA-SVEMNDQVQ 548
             +G++ +PGA S+E++  V 
Sbjct: 440 RERGLRNVPGASSIEVDGMVH 460



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 31/218 (14%)

Query: 59  HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN----------- 107
           H+ S+  +   L++ Y  CG + D R VFDE+  ++VV +NV+I  YV            
Sbjct: 108 HVASDAHVSSSLVQLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELF 167

Query: 108 ------NYLYY--------------DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLL 147
                 N + +               A+ V++ M V G + D      VL AC    ++ 
Sbjct: 168 DAMPERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAVD 227

Query: 148 VGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA 207
           +G  +H  VV+ GL   +   N ++ MY KCGC+++A  V   M  K VVTW +++AG+A
Sbjct: 228 LGEWVHRFVVRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFA 287

Query: 208 QNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            +G   +A+++   ME   + P+A T  ++L + ++  
Sbjct: 288 LHGLGLQAVEMFCRMERENMAPNAVTFLAILSACSHVG 325



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 104/224 (46%), Gaps = 47/224 (20%)

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ--------------- 380
           + ++LV +Y  CG + +AR+VFD+M  +DVV+W  MI+ Y  +G                
Sbjct: 115 VSSSLVQLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELFDAMPERN 174

Query: 381 ---------GY-------DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
                    GY        AV +F +M + G+  D +A +SVL+AC   G ++ G +  +
Sbjct: 175 VVSWTTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHR 234

Query: 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNM 484
            +  +  L   I     ++D+  + G +E+A ++ + M  E +   W +L+A   L+   
Sbjct: 235 FVVRR-GLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGME-EKSVVTWTTLIAGFALHG-- 290

Query: 485 DIGILAADHIF------HLAPNQSGYYVLLSNI----YAKAGRW 518
            +G+ A + +F      ++APN   +  +LS          GRW
Sbjct: 291 -LGLQAVE-MFCRMERENMAPNAVTFLAILSACSHVGLTDLGRW 332


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 166/478 (34%), Positives = 262/478 (54%), Gaps = 34/478 (7%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
           +N+LIRS++      DALH++  M       PD +T    +K+CS    L VG  +    
Sbjct: 138 YNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYA 197

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
            K G   + F  N L+ MY  CG +  A  + + +  K V+ WN+M+AGY +NG + E +
Sbjct: 198 FKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVV 257

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLS------------------------- 251
           ++ + M  +R   D  T+ S+  +       N+                           
Sbjct: 258 EMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMY 317

Query: 252 --------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
                    + +F ++ ++++V+W+ MI+ Y  +    EA+ ++ +M+   + PN +++ 
Sbjct: 318 AKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMV 377

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           SVL AC  L AL  G+ +H Y+ RK L   + L  ALVD YAKCG + +A   F+ M  +
Sbjct: 378 SVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVR 437

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           +  +WT++I     +G+  +A+ LFS ML + + P  + F+ VL ACSH  L+EEGR +F
Sbjct: 438 NTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHF 497

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
             MT+ Y + PRIEH+ C+VDLLGRAG ++EAY  I+ MP+EPN  +W +L++AC ++ N
Sbjct: 498 TSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKN 557

Query: 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           ++IG  A   I  L P  SG Y+LLSN YA  G+W +   VRK M  KG++K+PG S+
Sbjct: 558 VEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSL 615



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 147/340 (43%), Gaps = 35/340 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y +CG +V    +F  +  K V+ +N +I  YV N  + + + ++K M       D
Sbjct: 212 LIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFD 271

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   V  AC       +G  I     + G+  +      LV MY KCG L +ARR+ +
Sbjct: 272 EVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFD 331

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV-------T 242
            M S+DVV W++M++GY Q+ R  EAL +  EM+   + P+  TM S+L +        T
Sbjct: 332 RMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALET 391

Query: 243 NTSPENVLSVKEM--------------------------FLKLDNKNLVSWNVMIAVYAN 276
                + +  K++                          F  +  +N  +W  +I   A+
Sbjct: 392 GKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMAS 451

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK-IHRYVERKKLQPNLR 335
           N    EA++L+  M    IEP  ++   VL AC     +  GR+      +   + P + 
Sbjct: 452 NGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIE 511

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
               +VD+  + G + EA      M  + + V W +++SA
Sbjct: 512 HYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSA 551



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 131/291 (45%), Gaps = 16/291 (5%)

Query: 25  QYTLLS-GDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT 83
           + TLLS   AC  + D       L +  A+    + +  + ++   L+  Y  CG++   
Sbjct: 272 EVTLLSVATACGRLGDA-----NLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKA 326

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
           R +FD + +++VV ++ +I  Y  +    +AL ++  M     +P+  T   VL AC+  
Sbjct: 327 RRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVL 386

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
            +L  G  +H  + +  L   +  G  LV  Y KCGC+K+A +    MP ++  TW +++
Sbjct: 387 GALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALI 446

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK- 262
            G A NGR  EAL++   M    I+P   T   +L + ++     V   +  F  +    
Sbjct: 447 KGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCL--VEEGRRHFTSMTQDY 504

Query: 263 ----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                +  +  M+ +     +  EA      M    IEPNA+   ++L AC
Sbjct: 505 GICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMP---IEPNAVVWRALLSAC 552



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 102/198 (51%), Gaps = 2/198 (1%)

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           S+N++I  +     P +A+ L+++M +   + P+  +VA+ + +C  +  L +GR +  Y
Sbjct: 137 SYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAY 196

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
             ++    +  + N+L+ MYA CG +  A  +F  ++ + V++W +MI+ Y  +G   + 
Sbjct: 197 AFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEV 256

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           V +F  ML      D +  +SV +AC   G    G++  +   E+  L  R      LVD
Sbjct: 257 VEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSR-NLATALVD 315

Query: 445 LLGRAGKVEEAYDLIKQM 462
           +  + G++++A  L  +M
Sbjct: 316 MYAKCGELDKARRLFDRM 333


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 189/553 (34%), Positives = 286/553 (51%), Gaps = 87/553 (15%)

Query: 74  YGACGQMVDTRHVFDEITNKNV---VFFNVLIRSYVNNYLYYDALHVYKNMSV-HGFDPD 129
           YG CG +    ++FD++ ++ +   V +N ++ +Y+       AL ++  M+  H   PD
Sbjct: 304 YGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPD 363

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             +   +L AC+   + L G Q+H   ++ GL  ++F GN +V MY KCG ++EA +V  
Sbjct: 364 VISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQ 423

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFD-----------------------------------E 214
            M  KDVV+WN+MV GY+Q GR +                                   E
Sbjct: 424 RMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCE 483

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSP-----ENVLSVKEMFLKLD--------- 260
           ALDV R+M     +P+  T+ SLL +  +        E      +  L LD         
Sbjct: 484 ALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDL 543

Query: 261 -----------------------------NKNLVSWNVMIAVYANNSMPAEAVDLY---L 288
                                        ++++V+W VMI  YA +     A+ L+    
Sbjct: 544 KVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMF 603

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP-NLRLENALVDMYAKC 347
           +M+   I+PN  +++  L AC  L+AL  GR++H YV R       L + N L+DMY+K 
Sbjct: 604 KMD-KSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKS 662

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           G +  A+ VFD M  ++ VSWTS+++ YGM G+G DA+ +F +M    L PD I F+ VL
Sbjct: 663 GDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVL 722

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
            ACSH+G+++ G  +F  M++ + + P  EH+AC+VDL GRAG++ EA  LI +MPMEP 
Sbjct: 723 YACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPT 782

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527
             +W +L++AC L+SN+++G  AA+ +  L     G Y LLSNIYA A RW DV R+R  
Sbjct: 783 PVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYT 842

Query: 528 MNSKGIKKMPGAS 540
           M   GIKK PG S
Sbjct: 843 MKRTGIKKRPGCS 855



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 147/555 (26%), Positives = 247/555 (44%), Gaps = 100/555 (18%)

Query: 16  PVQALVLSTQYTLLSGDACNDI----LDKYPDIKTLKKLHAQIIINQ---HLHSNPSIGL 68
           P+++ +L +Q+T     +C  I    L +   +   K LH Q I+     HL +N     
Sbjct: 142 PIKSKLLQSQFTNTRLLSCATIPITALKECNSLAHAKLLHQQSIMQGLLFHLATN----- 196

Query: 69  KLMRTYGACGQMVDTRHVFDEI--TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF 126
            L+ TY A         + + +  +  +V ++N LIR  ++     D   +Y+ M   G+
Sbjct: 197 -LIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGW 255

Query: 127 DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR 186
            PD YT+P V KAC+  +SL +G  +H +V + G   N+F  N +V+MYGKCG L+ A  
Sbjct: 256 TPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHN 315

Query: 187 VLNDMPSK---DVVTWNSMVAGYAQNGRFDEALDVCREMESLRI-KPDADTMASLLPSVT 242
           + +D+  +   D+V+WNS+V+ Y      + AL +  +M +  +  PD  ++ ++LP+  
Sbjct: 316 MFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACA 375

Query: 243 NTSPE------NVLSVK---------------------------EMFLKLDNKNLVSWNV 269
           + +        +  S++                           ++F ++  K++VSWN 
Sbjct: 376 SLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNA 435

Query: 270 M-----------------------------------IAVYANNSMPAEAVDLYLQMEVHG 294
           M                                   I  YA      EA+D++ QM   G
Sbjct: 436 MVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCG 495

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ--------PNLRLENALVDMYAK 346
             PN +++ S+L AC  + ALL G++ H Y  +  L          +L++ N L+DMYAK
Sbjct: 496 SRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAK 555

Query: 347 CGSLTEARTVFDQM--RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM--SGLCPDSIA 402
           C S   AR +FD +  + +DVV+WT MI  Y   G   +A+ LFS M      + P+   
Sbjct: 556 CQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFT 615

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
               L AC+    L  GR     +   +     +    CL+D+  ++G V+ A  +   M
Sbjct: 616 LSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNM 675

Query: 463 PMEPNERIWGSLVAA 477
           P + N   W SL+  
Sbjct: 676 P-QRNAVSWTSLMTG 689



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 148/334 (44%), Gaps = 31/334 (9%)

Query: 70  LMRTYGACGQMVDTRHVFDEIT--NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV--HG 125
           L+  Y  C      R +FD ++  +++VV + V+I  Y  +    +AL ++  M      
Sbjct: 549 LIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKS 608

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL-DYNLFNGNGLVAMYGKCGCLKEA 184
             P+ +T  C L AC+   +L  G Q+H  V++       LF  N L+ MY K G +  A
Sbjct: 609 IKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTA 668

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           + V ++MP ++ V+W S++ GY  +GR ++AL V  EM  + + PD  T   +L + +++
Sbjct: 669 QIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHS 728

Query: 245 SPENVLSVKEMFLKLDNKNL------VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
               ++     F    +K+         +  M+ ++       EA+ L  +M    +EP 
Sbjct: 729 ---GMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMP---MEPT 782

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPN--LRLENALVDMYAKCGSL-TEART 355
            +   ++L AC          ++H  VE  +   N  L LE+     Y    ++   AR 
Sbjct: 783 PVVWVALLSAC----------RLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARR 832

Query: 356 VFDQMRCQDVVSWTSMISAYGMSG-QGYDAVALF 388
             D  R +  +  T +    G S  QG   VA F
Sbjct: 833 WKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATF 866


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 171/483 (35%), Positives = 270/483 (55%), Gaps = 40/483 (8%)

Query: 67  GLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV-HG 125
           G  L+  Y +   + D R +FDE+ +++VV +  LI  Y    L  +A  V+  M V   
Sbjct: 169 GNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAES 228

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             P+  T      A      L +G  +H  +V+ G   ++   N LV M+GKCGC+  A+
Sbjct: 229 VWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAK 288

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            V + MP KDV +W SMV+ YA+ G  + A                              
Sbjct: 289 EVFDGMPIKDVYSWTSMVSAYAKCGDLENA------------------------------ 318

Query: 246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                   ++F ++ N+N+VSW+ M+A Y++ +MP EA+ ++  M   G+EP   ++ SV
Sbjct: 319 -------AKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSV 371

Query: 306 LPACGDLSALLLGRKIH-RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           L AC  L +L +G  ++  Y+   K++    L NA +DM+AKCG +  A  +F  M  ++
Sbjct: 372 LSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKN 431

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
           VVSW +MI A+G+ GQ  +A+ LF +   +G+ PD   ++ VLSACSH GL+ EGR +FK
Sbjct: 432 VVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFK 491

Query: 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNM 484
            M   Y + PR EH+AC++DLLG+ G ++EA+++ + MP+  +E  WG+L+ AC ++ N+
Sbjct: 492 EMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNV 551

Query: 485 DIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEM 543
           +IG  AAD +  L P+ SG YVL+S IYA   +WG VK +R  M  + +KK PG +S+E+
Sbjct: 552 EIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEV 611

Query: 544 NDQ 546
           + +
Sbjct: 612 DGK 614



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 18/195 (9%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           L+   I++  +   P++    +  +  CG +     +F  + +KNVV +N +I ++  + 
Sbjct: 387 LYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHG 446

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV--GLDYNLFN 167
              +ALH+++    +G  PD  TY  VL ACS    +  G + H   +K+  G++    +
Sbjct: 447 QPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEG-RCHFKEMKIVYGIEPRAEH 505

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
              ++ + GK G L+EA  V   MP   D   W ++             L+ CR   ++ 
Sbjct: 506 YACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGAL-------------LNACRMHGNVE 552

Query: 227 I-KPDADTMASLLPS 240
           I K  AD +A L PS
Sbjct: 553 IGKCAADKLAGLDPS 567


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 181/502 (36%), Positives = 274/502 (54%), Gaps = 39/502 (7%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           K  D++T +K++A  I N  +  N  +   L+  Y  C  +   + +FDE    N+   N
Sbjct: 248 KLEDLETGEKVYA-FIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCN 306

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            +  +YV   L  +AL V+  M   G  PD  +    + +CS   ++L G   H  V++ 
Sbjct: 307 AMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRN 366

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G +      N L+ MY KC     A R+ + M +K VVTWNS+VAGY +NG  D A    
Sbjct: 367 GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAW--- 423

Query: 220 REMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSM 279
                                             E F  +  KN+VSWN +I+     S+
Sbjct: 424 ----------------------------------ETFETMPEKNIVSWNTIISGLVQGSL 449

Query: 280 PAEAVDLYLQMEVH-GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
             EA++++  M+   G+  + +++ S+  ACG L AL L + I+ Y+E+  +Q ++RL  
Sbjct: 450 FEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGT 509

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
            LVDM+++CG    A ++F+ +  +DV +WT+ I A  M+G    A+ LF  M+  GL P
Sbjct: 510 TLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKP 569

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           D +AFV  L+ACSH GL+++G+  F  M + + + P   H+ C+VDLLGRAG +EEA  L
Sbjct: 570 DGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQL 629

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
           I+ MPMEPN+ IW SL+AAC +  N+++   AA+ I  LAP ++G YVLLSN+YA AGRW
Sbjct: 630 IEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRW 689

Query: 519 GDVKRVRKFMNSKGIKKMPGAS 540
            D+ +VR  M  KG++K PG S
Sbjct: 690 NDMAKVRLSMKEKGLRKPPGTS 711



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 142/521 (27%), Positives = 231/521 (44%), Gaps = 78/521 (14%)

Query: 17  VQALVLSTQYTLLSGDACNDI----LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMR 72
           V A   +T+ +LL+   C       L     I  LK  H + +  Q L ++ S   KL+ 
Sbjct: 14  VLATTTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFH-RSLTKQGLDNDVSTITKLVA 72

Query: 73  ---TYGACGQMVDTRHVFDEITNKNVVF-FNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
                G    +   + VF+   +    F +N LIR Y ++ L  +A+ ++  M   G  P
Sbjct: 73  RSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISP 132

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D YT+P  L AC+ S +   G+QIH  +VK+G   +LF  N LV  Y +CG L  AR+V 
Sbjct: 133 DKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVF 192

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDV-CREMESLRIKPDADTMASLLPS------- 240
           ++M  ++VV+W SM+ GYA+     +A+D+  R +    + P++ TM  ++ +       
Sbjct: 193 DEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDL 252

Query: 241 ---------VTNTSPE----------------NVLSV-KEMFLKLDNKNLVSWNVMIAVY 274
                    + N+  E                N + V K +F +    NL   N M + Y
Sbjct: 253 ETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNY 312

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
               +  EA+ ++  M   G+ P+ IS+ S + +C  L  +L G+  H YV R   +   
Sbjct: 313 VRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWD 372

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM--- 391
            + NAL+DMY KC     A  +FD+M  + VV+W S+++ Y  +G+   A   F  M   
Sbjct: 373 NICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEK 432

Query: 392 -------LMSGLC----------------------PDSIAFVSVLSACSHAGLLEEGRY- 421
                  ++SGL                        D +  +S+ SAC H G L+  ++ 
Sbjct: 433 NIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWI 492

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           Y+ I     +L  R+     LVD+  R G  E A  +   +
Sbjct: 493 YYYIEKNGIQLDVRLG--TTLVDMFSRCGDPESAMSIFNSL 531


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 170/458 (37%), Positives = 263/458 (57%), Gaps = 36/458 (7%)

Query: 135 CVLKACSGSNSLLVGLQIHCSVVKVGLDY-NLFNGNGLV-AMYGKCGCLKEARRVLNDMP 192
           C+    S ++S     QIH   ++ G+   N   G  L+  +   C  +  A ++ + + 
Sbjct: 42  CIALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQ 101

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP------ 246
           + ++ TWN+M+ GYA++     AL++ R+M    I+PD  T   LL ++           
Sbjct: 102 NPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEK 161

Query: 247 ----------------ENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSM 279
                           +N L           S  ++F  +  +NLV+WN +I  YA N  
Sbjct: 162 VHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGR 221

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
           P EA+ L+ +M + G+EP+  ++ S+L AC +L AL LGR+ H Y+ +  L  NL   NA
Sbjct: 222 PNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNA 281

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           L+D+YAKCGS+ +A  VFD+M  + VVSWTS+I    ++G G +A+ LF ++   GL P 
Sbjct: 282 LLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPS 341

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
            I FV VL ACSH G+++EG  YFK M E+Y +VP+IEH+ C+VDLLGRAG V++A++ I
Sbjct: 342 EITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFI 401

Query: 460 KQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519
           + MPM+PN  +W +L+ AC ++ ++ +G +A   +  L P  SG YVLLSN+YA   RW 
Sbjct: 402 QNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWS 461

Query: 520 DVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           DV +VR+ M  +G+KK PG S VE+ +++    +  RS
Sbjct: 462 DVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRS 499



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 175/370 (47%), Gaps = 36/370 (9%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTY-GACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
            +++HA  I +    +NP +G  L+ T    C  M     +F +I N N+  +N +IR Y
Sbjct: 56  FRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGY 115

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
             +     AL +Y+ M V   +PD +TYP +LKA +    +  G ++H   ++ G +  +
Sbjct: 116 AESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLV 175

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           F  N LV MY  CG  + A ++   M  +++VTWNS++ GYA NGR +EAL + REM   
Sbjct: 176 FVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLR 235

Query: 226 RIKPDADTMASLLPSVT----------------------NTSPENVL--------SVKE- 254
            ++PD  TM SLL +                        N    N L        S+++ 
Sbjct: 236 GVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQA 295

Query: 255 --MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
             +F +++ K++VSW  +I   A N    EA++L+ ++E  G+ P+ I+   VL AC   
Sbjct: 296 HKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHC 355

Query: 313 SALLLGRK-IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTS 370
             +  G     R  E   + P +     +VD+  + G + +A      M  Q + V W +
Sbjct: 356 GMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRT 415

Query: 371 MISAYGMSGQ 380
           ++ A  + G 
Sbjct: 416 LLGACTIHGH 425



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 145/286 (50%), Gaps = 11/286 (3%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
           + K  D++  +K+H+ I I     S   +   L+  Y ACG       +F+ +  +N+V 
Sbjct: 150 IAKLMDVREGEKVHS-IAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVT 208

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +N +I  Y  N    +AL +++ M + G +PD +T   +L AC+   +L +G + H  +V
Sbjct: 209 WNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMV 268

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           KVGLD NL  GN L+ +Y KCG +++A +V ++M  K VV+W S++ G A NG   EAL+
Sbjct: 269 KVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALE 328

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLVSWNVMIA 272
           + +E+E   + P   T   +L + ++     V    + F ++  +      +  +  M+ 
Sbjct: 329 LFKELERKGLMPSEITFVGVLYACSHCG--MVDEGFDYFKRMKEEYGIVPKIEHYGCMVD 386

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +     +  +A +    M    ++PNA+   ++L AC     L LG
Sbjct: 387 LLGRAGLVKQAHEFIQNMP---MQPNAVVWRTLLGACTIHGHLALG 429


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 165/432 (38%), Positives = 250/432 (57%), Gaps = 53/432 (12%)

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           PD  +   VL AC+   + L G  +H   V+ G   +LF GN LV MY KCG + EA +V
Sbjct: 11  PDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKV 70

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE 247
            + +  KDVV+WN+MV GY+Q GRF++AL +  +M                        E
Sbjct: 71  FDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMRE----------------------E 108

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG------------- 294
           N+             N+VSW+ +IA +A   +  E +D++ +M+ HG             
Sbjct: 109 NI-----------ELNVVSWSAVIAAFAQRGLGCETLDVFREMQ-HGEANDALELFSWMF 156

Query: 295 -----IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN-LRLENALVDMYAKCG 348
                ++PN  +++  L AC  L+AL LGR+IH Y+ R       L + N L+DMYAK G
Sbjct: 157 KQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSG 216

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
            +  AR VFD ++ ++ VSWTS+++ YGM G+G +A+ +F +M   GL PD +  + VL 
Sbjct: 217 DIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLY 276

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
           ACSH+G++++G  +F  M++++ ++P  EH+AC+VDLLGRAG++ EA +LI+ M MEP+ 
Sbjct: 277 ACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSS 336

Query: 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
            +W +L++ C +++N+++G  AA  +  L     G Y LLSNIYA A RW DV RVR  M
Sbjct: 337 IVWVALLSGCRIHANVELGEHAAKQLLELNSENDGSYTLLSNIYANARRWKDVARVRSLM 396

Query: 529 NSKGIKKMPGAS 540
            + GI+K PG S
Sbjct: 397 KNSGIRKRPGCS 408



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 80/132 (60%)

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
           + P+ +S+ +VLPAC  + A L G+ +H    R     +L + NALVDMYAKCG + EA 
Sbjct: 9   MRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEAS 68

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            VFD+++ +DVVSW +M++ Y   G+  DA+ LF KM    +  + +++ +V++A +  G
Sbjct: 69  KVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRG 128

Query: 415 LLEEGRYYFKIM 426
           L  E    F+ M
Sbjct: 129 LGCETLDVFREM 140



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 130/302 (43%), Gaps = 63/302 (20%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS--- 122
           +G  L+  Y  CG + +   VFD I  K+VV +N ++  Y     + DAL +++ M    
Sbjct: 50  VGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREEN 109

Query: 123 -------------------------------VHG------------------FDPDCYTY 133
                                           HG                    P+C+T 
Sbjct: 110 IELNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTI 169

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYN-LFNGNGLVAMYGKCGCLKEARRVLNDMP 192
            C L AC+   +L +G QIH  +++   D   L+  N L+ MY K G +  AR V +++ 
Sbjct: 170 SCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLK 229

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT-----SPE 247
            K+ V+W S++ GY  +GR  EAL+V  EM  + ++PD  T+  +L + +++       E
Sbjct: 230 QKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIE 289

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
              S+ + F  +  +    +  M+ +        EA++L   M+   +EP++I   ++L 
Sbjct: 290 FFNSMSKEFGVIPGQE--HYACMVDLLGRAGRLNEAMELIEGMQ---MEPSSIVWVALLS 344

Query: 308 AC 309
            C
Sbjct: 345 GC 346



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++HA I+ N    +   +   L+  Y   G +   R VFD +  KN V +  L+  Y  
Sbjct: 186 RQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGM 245

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +    +AL V+  M   G  PD  T   VL ACS S  +  G++   S+ K   ++ +  
Sbjct: 246 HGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSK---EFGVIP 302

Query: 168 GNG----LVAMYGKCGCLKEARRVLNDM---PSKDVVTWNSMVAG 205
           G      +V + G+ G L EA  ++  M   PS   + W ++++G
Sbjct: 303 GQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSS--IVWVALLSG 345


>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 180/524 (34%), Positives = 286/524 (54%), Gaps = 54/524 (10%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +L      + L K+HAQI+++     N  +   L+  Y + G +   + VF++IT  +  
Sbjct: 33  VLKSCVSFRNLAKIHAQIVVSGFSQKNYILN-HLLSLYISFGSLGSAQKVFEDITAPSTT 91

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +N +I+ +  +     ++ ++K M++ G + + +TY  +L AC  S     G QIH  V
Sbjct: 92  VWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRV 151

Query: 157 VKVGLDYNLFNGNGLVAMYGKCG-----CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +  G   NL+    L+ +Y   G      LK AR + ++MP  +VV WNS++AGY + G 
Sbjct: 152 LVNGYWSNLYVRTNLINLYANGGDGGDFDLKRARYLFDEMPDSNVVGWNSLLAGYVRRGD 211

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
           FD A  V  EM                       PE              +N+ +W +M+
Sbjct: 212 FDGARKVFDEM-----------------------PE--------------RNVRTWTIMV 234

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER---- 327
           A +A N     A+ L+ QM   G+E + +++ + L AC +L  L LG+ IH YVER    
Sbjct: 235 AGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRS 294

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
           + L   + L NAL+ MYA CG +  A  VF+++  ++ VSW+S+I+ +   G G +A+ +
Sbjct: 295 RHLPVLVSLNNALIHMYASCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQGCGVEAIRI 354

Query: 388 FSKMLMSG---LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           F  ML SG   + PD I F+  L+ACSHAGL+ +G   F+ M + + ++P+IEH+ C+VD
Sbjct: 355 FQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVD 414

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI-FHLAPNQ-- 501
           LL RAG + EA  LI+ MPM+PN  +WG+L++ C L+ N +I    A H+ F + PN   
Sbjct: 415 LLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKNDEIVSHVAKHLSFEIHPNNQA 474

Query: 502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMN 544
           +GY++LL+N+YA  GRW D   VR+ M+  G+KK  G S +E+N
Sbjct: 475 AGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWIEIN 518


>gi|15230248|ref|NP_189142.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273633|sp|Q9LJR6.1|PP253_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial; Flags: Precursor
 gi|9293988|dbj|BAB01891.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643452|gb|AEE76973.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 601

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 171/538 (31%), Positives = 295/538 (54%), Gaps = 35/538 (6%)

Query: 45  KTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           + + ++HA +I   +L +  SI   L+ + G  G++   R VFDE+  + V  +N +I  
Sbjct: 31  RHITQIHAFVISTGNLLNGSSISRDLIASCGRIGEISYARKVFDELPQRGVSVYNSMIVV 90

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
           Y       + L +Y  M      PD  T+   +KAC     L  G  + C  V  G   +
Sbjct: 91  YSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEKGEAVWCKAVDFGYKND 150

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
           +F  + ++ +Y KCG + EA  +   M  +DV+ W +MV G+AQ G+  +A++  REM++
Sbjct: 151 VFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQN 210

Query: 225 LRIKPDADTMASLLPSVTNTS-----------------PENVL---SVKEMFLKLD---- 260
                D   M  LL +  +                   P NV+   S+ +M+ K+     
Sbjct: 211 EGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLVDMYAKVGFIEV 270

Query: 261 ---------NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
                     K  VSW  +I+ +A N +  +A +  ++M+  G +P+ +++  VL AC  
Sbjct: 271 ASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQ 330

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           + +L  GR +H Y+ ++ +   +    AL+DMY+KCG+L+ +R +F+ +  +D+V W +M
Sbjct: 331 VGSLKTGRLVHCYILKRHVLDRVT-ATALMDMYSKCGALSSSREIFEHVGRKDLVCWNTM 389

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           IS YG+ G G + V+LF KM  S + PD   F S+LSA SH+GL+E+G+++F +M  +YK
Sbjct: 390 ISCYGIHGNGQEVVSLFLKMTESNIEPDHATFASLLSALSHSGLVEQGQHWFSVMINKYK 449

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
           + P  +H+ CL+DLL RAG+VEEA D+I    ++    IW +L++ C  + N+ +G +AA
Sbjct: 450 IQPSEKHYVCLIDLLARAGRVEEALDMINSEKLDNALPIWVALLSGCINHRNLSVGDIAA 509

Query: 492 DHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           + I  L P+  G   L+SN +A A +W +V +VRK M +  ++K+PG +++E+N +++
Sbjct: 510 NKILQLNPDSIGIQTLVSNFFATANKWKEVAKVRKLMRNGAMEKVPGYSAIEVNGELR 567


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 170/458 (37%), Positives = 263/458 (57%), Gaps = 36/458 (7%)

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGCLKEARR 186
           PD   Y  +LK C+    +  G  +H  +V    LD +L   N +V MY KCGCL +ARR
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARR 144

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP---SVTN 243
           + ++MP+KD+VTW +++AG++QN R  +AL +  +M  L  +P+  T++SLL    S   
Sbjct: 145 MFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHG 204

Query: 244 TSPENVL------------------------------SVKEMFLKLDNKNLVSWNVMIAV 273
             P   L                              + +  F  +  K+ VSWN +I+ 
Sbjct: 205 LDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISG 264

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           +A       A+ L  +M+    +P   + +SVL AC  + AL  G+ +H ++ +  L+  
Sbjct: 265 HARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLI 324

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             + N L+DMYAK GS+ +A+ VFD++   DVVSW +M++     G G + +  F +ML 
Sbjct: 325 AFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLR 384

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
            G+ P+ I+F+ VL+ACSH+GLL+EG YYF++M ++YK+ P + H+   VDLLGR G ++
Sbjct: 385 IGIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLD 443

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
            A   I++MP+EP   +WG+L+ AC ++ NM++G+ AA+  F L P+ SG  +LLSNIYA
Sbjct: 444 RAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYA 503

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            AGRW DV +VRK M   G+KK P  S VE+ + V + 
Sbjct: 504 SAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLF 541



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 170/359 (47%), Gaps = 34/359 (9%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           +HA ++ +  L ++  +   ++  Y  CG + D R +FDE+  K++V +  LI  +  N 
Sbjct: 109 VHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNN 168

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
              DAL ++  M   GF P+ +T   +LKA    + L  G Q+H   +K G   +++ G+
Sbjct: 169 RPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGS 228

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            LV MY +CG +  A+   + MP+K  V+WN++++G+A+ G  + AL +  +M+    +P
Sbjct: 229 ALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQP 288

Query: 230 DADTMASLLPS---------------------------VTNT------SPENVLSVKEMF 256
              T +S+L +                           + NT         ++   K +F
Sbjct: 289 THFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVF 348

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
            +L   ++VSWN M+   A + +  E +D + QM   GIEPN IS   VL AC     L 
Sbjct: 349 DRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLD 408

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTSMISA 374
            G      +++ K++P++      VD+  + G L  A     +M  +   + W +++ A
Sbjct: 409 EGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGA 467


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 168/552 (30%), Positives = 294/552 (53%), Gaps = 41/552 (7%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           +H Q I++    S   +G  +++ Y    ++ D R VFD +  K+ + +N +I  Y  N 
Sbjct: 141 IHGQAIVDG-CDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNE 199

Query: 110 LYYDALHVYKNMSVHGFDP-DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
           +Y +++ V++++        D  T   +L A +    L +G+QIH    K G   + +  
Sbjct: 200 MYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVL 259

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
            G +++Y KCG +K A  +  +    D+V +N+M+ GY  NG  + +L + +E+     K
Sbjct: 260 TGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAK 319

Query: 229 PDADTMASLLPS-------------------VTNTSPENVL-----------SVKEMFLK 258
             + T+ SL+P                    +++TS    L           S +++F +
Sbjct: 320 LKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDE 379

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
              K+L SWN MI+ Y  N +  +A+ L+ +M+     PN +++  +L AC  L AL LG
Sbjct: 380 SPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLG 439

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           + +H  V     + ++ +  AL+ MYAKCGS+ EAR +FD M  ++ V+W +MIS YG+ 
Sbjct: 440 KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLH 499

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           G G +A+ +FS+ML SG+ P  + F+ VL ACSHAGL++EG   F  M  +Y   P ++H
Sbjct: 500 GHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKH 559

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
           +AC+VD+LGRAG ++ A   I+ MP++P   +W +L+ AC ++ + ++    ++ +F L 
Sbjct: 560 YACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELD 619

Query: 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQIIALPLRSSK 558
           P+  GY+VLLSNI++    +     VR+    + + K PG ++     ++I   P     
Sbjct: 620 PDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTL-----IEIGETP----H 670

Query: 559 CLTTGPKNVPPI 570
             T+G ++ P +
Sbjct: 671 VFTSGDQSHPQV 682



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 146/587 (24%), Positives = 262/587 (44%), Gaps = 85/587 (14%)

Query: 28  LLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVF 87
           L+S +   D+  +   I  L + HAQI+++    ++ S+  KL +     G +   R +F
Sbjct: 17  LISKNNFLDLFKRSTSISHLAQTHAQIVLHG-FRNDISLLTKLTQRLSDLGAIYYARDIF 75

Query: 88  DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSL 146
             +   +V  FNVL+R +  N   + +L V+ ++       P+  TY   + A SG    
Sbjct: 76  LSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDD 135

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY 206
             G  IH   +  G D  L  G+ +V MY K   +++AR+V + MP KD + WN+M++GY
Sbjct: 136 RAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGY 195

Query: 207 AQNGRFDEALDVCREM--ESLRIKPDADTMASLLPSV----------------TNT---S 245
            +N  + E++ V R++  ES   + D  T+  +LP+V                T T   S
Sbjct: 196 RKNEMYVESIQVFRDLINESC-TRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYS 254

Query: 246 PENVLS--------------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
            + VL+                 +F +    ++V++N MI  Y +N     ++ L+ ++ 
Sbjct: 255 HDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELM 314

Query: 292 VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351
           + G +  + ++ S++P  G    L+L   IH Y  +     +  +  AL  +Y+K   + 
Sbjct: 315 LSGAKLKSSTLVSLVPVSGH---LMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIE 371

Query: 352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
            AR +FD+   + + SW +MIS Y  +G   DA++LF +M  S   P+ +    +LSAC+
Sbjct: 372 SARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACA 431

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIW 471
             G L  G++   ++         I     L+ +  + G + EA  L   MP + NE  W
Sbjct: 432 QLGALSLGKWVHDLV-RSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMP-KKNEVTW 489

Query: 472 GSLVAA------------------------------CCLYSNMDIGIL-AADHIFHLAPN 500
            ++++                               C LY+    G++   D IF+   +
Sbjct: 490 NTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIH 549

Query: 501 QSGY------YVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           + G+      Y  + +I    GR G ++R  +F+ +  I+  PG SV
Sbjct: 550 RYGFEPSVKHYACVVDIL---GRAGHLQRALQFIEAMPIQ--PGPSV 591



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 180/412 (43%), Gaps = 45/412 (10%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQ-----HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
           +LD  P +  L++L   + I+        +S+  +    +  Y  CG++     +F E  
Sbjct: 224 LLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFR 283

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
             ++V +N +I  Y +N     +L ++K + + G      T   ++     S  L++   
Sbjct: 284 RPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPV---SGHLMLIYA 340

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           IH   +K     +      L  +Y K   ++ AR++ ++ P K + +WN+M++GY QNG 
Sbjct: 341 IHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGL 400

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPS----------------VTNTSPENVLSV--- 252
            ++A+ + REM++    P+  T+  +L +                V +T  E+ + V   
Sbjct: 401 TEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTA 460

Query: 253 --------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                         + +F  +  KN V+WN MI+ Y  +    EA+ ++ +M   GI P 
Sbjct: 461 LIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPT 520

Query: 299 AISVASVLPACGDLSALLLGRKI-HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
            ++   VL AC     +  G +I +  + R   +P+++    +VD+  + G L  A    
Sbjct: 521 PVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFI 580

Query: 358 DQMRCQDVVS-WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
           + M  Q   S W +++ A  +      A  +  K+    L PD++ +  +LS
Sbjct: 581 EAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLF--ELDPDNVGYHVLLS 630


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 181/529 (34%), Positives = 276/529 (52%), Gaps = 34/529 (6%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y   G + + R VFD +  +N V +  +I  Y    L  +A  V++ M    
Sbjct: 148 VGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREE 207

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            D + + +  VL A +    +  G QIHC  VK GL   L   N LV MY KCG L ++ 
Sbjct: 208 EDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSL 267

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT- 244
           +V      K+ +TW++M+ GYAQ+G   +AL +   M    I P   T+  +L + ++  
Sbjct: 268 QVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDAC 327

Query: 245 SPENVLSVKEMFLK--------------------------------LDNKNLVSWNVMIA 272
           + E    V    LK                                L   +LV W  MIA
Sbjct: 328 AVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIA 387

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y  N    +A+ LY +M++ GI PN +++ASVL AC +L+A   GR+IH    +  L  
Sbjct: 388 GYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGL 447

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
            + + +AL  MYAKCG+L E   VF +M  +D++SW +MIS    +G G +A+ LF +M 
Sbjct: 448 EVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMR 507

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
                PD + FV+VLSACSH GL++ G  YF++M +++ L+P++EH+AC+VD+L RAGK+
Sbjct: 508 QQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKL 567

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
            EA + I+   ++    +W  L+ AC  Y N ++G  A + +  L   +S  YVLLS IY
Sbjct: 568 YEAKEFIESTTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSGIY 627

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRSSKCL 560
              GR  DV+RVR  M  +G+ K PG S +E+   V +  +  +   C+
Sbjct: 628 TALGRPEDVERVRSMMKVRGVSKEPGCSWIELKSNVHVFVVGDQMHPCI 676



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 139/478 (29%), Positives = 239/478 (50%), Gaps = 40/478 (8%)

Query: 38  LDKYPDIKTLKK---LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           L ++   K+L+K   LHAQII      S   +   L+  Y  C  +   + VFD I NK+
Sbjct: 14  LVQFTHQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKD 73

Query: 95  VVFFNVLIRSYVNNYLYYDA--LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           V+ +N LI  Y        +  + +++ M      P+ +T+  +  A S  +S+  G Q 
Sbjct: 74  VISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQA 133

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H   +K+   Y++F G+ L+ MY K G L EAR V + MP ++ VTW +M++GYA     
Sbjct: 134 HAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLA 193

Query: 213 DEALDVC----REMESLRIKPDADTMASL-LPSVTNTSPE-NVLSVK------------- 253
            EA +V     RE E +        +++L +P   ++  + + L+VK             
Sbjct: 194 GEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNAL 253

Query: 254 --------------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                         ++F   ++KN ++W+ MI  YA +    +A+ L+ +M   GI P+ 
Sbjct: 254 VTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSE 313

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
            ++  VL AC D  A+  G+++H Y+ +   +  L +  ALVDMYAK G   +AR  F+ 
Sbjct: 314 FTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNY 373

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
           ++  D+V WTSMI+ Y  +G+  DA++L+ +M M G+ P+ +   SVL ACS+    ++G
Sbjct: 374 LQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQG 433

Query: 420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           R      T +Y L   +   + L  +  + G +EE   + ++MP E +   W ++++ 
Sbjct: 434 R-QIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMP-ERDIISWNAMISG 489



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 122/244 (50%), Gaps = 14/244 (5%)

Query: 2   KAVVLLCR-HFSTTKPVQALVLSTQYTLLSG-DACNDILDKYPDIKTLKKLHAQIIINQH 59
           KA+ L  R HF+   P       +++TL+   +AC+D       ++  K++H   ++   
Sbjct: 296 KALKLFSRMHFAGINP-------SEFTLVGVLNACSDACA----VEEGKQVH-NYLLKLG 343

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
             S   I   L+  Y   G   D R  F+ +   ++V +  +I  YV N    DAL +Y 
Sbjct: 344 FESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYC 403

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M + G  P+  T   VLKACS   +   G QIH   +K GL   +  G+ L  MY KCG
Sbjct: 404 RMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCG 463

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
            L+E   V   MP +D+++WN+M++G +QNG   EAL++  EM     KPD  T  ++L 
Sbjct: 464 NLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLS 523

Query: 240 SVTN 243
           + ++
Sbjct: 524 ACSH 527


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 181/502 (36%), Positives = 274/502 (54%), Gaps = 39/502 (7%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           K  D++T +K++A  I N  +  N  +   L+  Y  C  +   + +FDE    N+   N
Sbjct: 248 KLEDLETGEKVYA-FIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCN 306

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            +  +YV   L  +AL V+  M   G  PD  +    + +CS   ++L G   H  V++ 
Sbjct: 307 AMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRN 366

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G +      N L+ MY KC     A R+ + M +K VVTWNS+VAGY +NG  D A    
Sbjct: 367 GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAW--- 423

Query: 220 REMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSM 279
                                             E F  +  KN+VSWN +I+     S+
Sbjct: 424 ----------------------------------ETFETMPEKNIVSWNTIISGLVQGSL 449

Query: 280 PAEAVDLYLQMEVH-GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
             EA++++  M+   G+  + +++ S+  ACG L AL L + I+ Y+E+  +Q ++RL  
Sbjct: 450 FEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGT 509

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
            LVDM+++CG    A ++F+ +  +DV +WT+ I A  M+G    A+ LF  M+  GL P
Sbjct: 510 TLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKP 569

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           D +AFV  L+ACSH GL+++G+  F  M + + + P   H+ C+VDLLGRAG +EEA  L
Sbjct: 570 DGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQL 629

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
           I+ MPMEPN+ IW SL+AAC +  N+++   AA+ I  LAP ++G YVLLSN+YA AGRW
Sbjct: 630 IEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRW 689

Query: 519 GDVKRVRKFMNSKGIKKMPGAS 540
            D+ +VR  M  KG++K PG S
Sbjct: 690 NDMAKVRLSMKEKGLRKPPGTS 711



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 142/521 (27%), Positives = 231/521 (44%), Gaps = 78/521 (14%)

Query: 17  VQALVLSTQYTLLSGDACNDI----LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMR 72
           V A   +T+ +LL+   C       L     I  LK  H + +  Q L ++ S   KL+ 
Sbjct: 14  VLATTTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFH-RSLTKQGLDNDVSTITKLVA 72

Query: 73  ---TYGACGQMVDTRHVFDEITNKNVVF-FNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
                G    +   + VF+   +    F +N LIR Y ++ L  +A+ ++  M   G  P
Sbjct: 73  RSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISP 132

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D YT+P  L AC+ S +   G+QIH  +VK+G   +LF  N LV  Y +CG L  AR+V 
Sbjct: 133 DKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVF 192

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDV-CREMESLRIKPDADTMASLLPS------- 240
           ++M  ++VV+W SM+ GYA+     +A+D+  R +    + P++ TM  ++ +       
Sbjct: 193 DEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDL 252

Query: 241 ---------VTNTSPE----------------NVLSV-KEMFLKLDNKNLVSWNVMIAVY 274
                    + N+  E                N + V K +F +    NL   N M + Y
Sbjct: 253 ETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNY 312

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
               +  EA+ ++  M   G+ P+ IS+ S + +C  L  +L G+  H YV R   +   
Sbjct: 313 VRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWD 372

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM--- 391
            + NAL+DMY KC     A  +FD+M  + VV+W S+++ Y  +G+   A   F  M   
Sbjct: 373 NICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEK 432

Query: 392 -------LMSGLC----------------------PDSIAFVSVLSACSHAGLLEEGRY- 421
                  ++SGL                        D +  +S+ SAC H G L+  ++ 
Sbjct: 433 NIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWI 492

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           Y+ I     +L  R+     LVD+  R G  E A  +   +
Sbjct: 493 YYYIEKNGIQLDVRLG--TTLVDMFSRCGDPESAMSIFNSL 531


>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14820-like, partial [Brachypodium
           distachyon]
          Length = 498

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 174/503 (34%), Positives = 275/503 (54%), Gaps = 42/503 (8%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y AC ++ + R VFD +  +++V + V++ SY N   Y + L +   M    
Sbjct: 30  VGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNYRETLLLLNKMKRSR 89

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHC--SVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183
             PD      VL  C  +  L  G  IH    V  + +D  L   + L+ MY  C  ++ 
Sbjct: 90  VVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARL--SSALINMYASCMDMEM 147

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           A ++ + M  KD+V+  +MV GYA+NG+ + A                            
Sbjct: 148 ADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIA---------------------------- 179

Query: 244 TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
                    + +F  +  K++VSW+ MI+ YA N+ P+E ++L+ +M+  G+ P+ I++ 
Sbjct: 180 ---------RSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITML 230

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           SV+ AC ++ +L   R IH  V        L + NAL+DM++KCGSLT A  +F+ M  +
Sbjct: 231 SVISACANIGSLDKARWIHSIVGNHGFYKILSICNALIDMFSKCGSLTLALNMFNAMPRK 290

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           +V++WTSMI+A+ M G G  A+ LF +M   G+ P+ + F+ +L AC HAGL+ EGR  F
Sbjct: 291 NVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLLYACCHAGLVYEGRSLF 350

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
           + M ++Y++ P+ EH+ C+VDL+GRA  ++EA DLI+ M + PN  IWGSL+AAC ++ +
Sbjct: 351 ECMLQEYRIEPKHEHYGCMVDLMGRAKLMQEAVDLIESMHIRPNVAIWGSLLAACWMHGD 410

Query: 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VE 542
           +++G  AA  I  L PN  G YVLLSNI+AK+G W + +++R  M   G+ K  G S +E
Sbjct: 411 IELGEFAAKKILELDPNHDGAYVLLSNIHAKSGNWNNAQKLRVMMKVHGVSKETGYSWLE 470

Query: 543 MNDQVQIIALPLRSSKCLTTGPK 565
           +N  V    L       L    K
Sbjct: 471 LNCTVHGFQLETHDCAILVLSEK 493



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 37/293 (12%)

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
           ++R+  D D            + + V   + +F  +  ++LV+W VM+  Y N     E 
Sbjct: 19  AVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNYRET 78

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
           + L  +M+   + P+ + +A+VL  CG    L  G+ IH Y++   +  + RL +AL++M
Sbjct: 79  LLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSALINM 138

Query: 344 YAKC-------------------------------GSLTEARTVFDQMRCQDVVSWTSMI 372
           YA C                               G +  AR++F+ M  +DVVSW++MI
Sbjct: 139 YASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMI 198

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ--Y 430
           SAY  + Q  + + LF+KM   G+ PD I  +SV+SAC++ G L++ R+   I+     Y
Sbjct: 199 SAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFY 258

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
           K++        L+D+  + G +  A ++   MP   N   W S++AA  ++ +
Sbjct: 259 KILSICN---ALIDMFSKCGSLTLALNMFNAMP-RKNVITWTSMIAAFAMHGD 307



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 154/337 (45%), Gaps = 26/337 (7%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y   G++   R +F+ +  K+VV ++ +I +Y  N    + L+++  M   G  PD  T 
Sbjct: 170 YAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITM 229

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             V+ AC+   SL     IH  V   G    L   N L+ M+ KCG L  A  + N MP 
Sbjct: 230 LSVISACANIGSLDKARWIHSIVGNHGFYKILSICNALIDMFSKCGSLTLALNMFNAMPR 289

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK 253
           K+V+TW SM+A +A +G    AL +  +M+   ++P+  T   LL +  +     V   +
Sbjct: 290 KNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLLYACCHAGL--VYEGR 347

Query: 254 EMF------LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
            +F       +++ K+   +  M+ +     +  EAVDL   M    I PN     S+L 
Sbjct: 348 SLFECMLQEYRIEPKH-EHYGCMVDLMGRAKLMQEAVDLIESMH---IRPNVAIWGSLLA 403

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALV---DMYAKCGSLTEARTVFDQMRCQD 364
           AC     + LG     +  +K L+ +   + A V   +++AK G+   A+ +   M+   
Sbjct: 404 ACWMHGDIELG----EFAAKKILELDPNHDGAYVLLSNIHAKSGNWNNAQKLRVMMKVHG 459

Query: 365 V-----VSWTSM-ISAYGMSGQGYD-AVALFSKMLMS 394
           V      SW  +  + +G   + +D A+ + S+ L S
Sbjct: 460 VSKETGYSWLELNCTVHGFQLETHDCAILVLSEKLPS 496



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 102/226 (45%), Gaps = 14/226 (6%)

Query: 25  QYTLLSG-DACNDI--LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMV 81
           + T+LS   AC +I  LDK   I +       I+ N   +   SI   L+  +  CG + 
Sbjct: 226 EITMLSVISACANIGSLDKARWIHS-------IVGNHGFYKILSICNALIDMFSKCGSLT 278

Query: 82  DTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACS 141
              ++F+ +  KNV+ +  +I ++  +     AL ++  M   G +P+  T+  +L AC 
Sbjct: 279 LALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLLYACC 338

Query: 142 GSNSLLVGLQI-HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTW 199
            +  +  G  +  C + +  ++    +   +V + G+   ++EA  ++  M  + +V  W
Sbjct: 339 HAGLVYEGRSLFECMLQEYRIEPKHEHYGCMVDLMGRAKLMQEAVDLIESMHIRPNVAIW 398

Query: 200 NSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            S++A    +G  +      +++  L + P+ D    LL ++   S
Sbjct: 399 GSLLAACWMHGDIELGEFAAKKI--LELDPNHDGAYVLLSNIHAKS 442


>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Brachypodium distachyon]
          Length = 532

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 170/506 (33%), Positives = 280/506 (55%), Gaps = 15/506 (2%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGAC--GQMVDTRHVFDEITNKNVVFFNVL 101
           ++ +K++HA +++   L S+PS   +L+        G +     VFD+I   ++  +N L
Sbjct: 21  LRQIKQVHALMVLRGFL-SDPSALRELLFASAVAVRGAIAHAYLVFDQIPRPDLFMYNTL 79

Query: 102 IRSYVNNYLYYDALHVYKNM----SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           IR   +     DA+ +Y  M    S  G  PD  T+P VL+AC+   +   G Q+H  VV
Sbjct: 80  IRGAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRACTAMGAGGTGAQVHAHVV 139

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           K G + + F  N L+ M+  CG L  A  + +    +D V W++M+ G A+ G    A  
Sbjct: 140 KAGCESDAFVRNALIGMHASCGELGVASALFDGRAREDAVAWSAMITGCARRGDIVAARK 199

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
           +  E   ++     + M +        +P  VL     F ++  +++VSWN MI+ +   
Sbjct: 200 LFDEC-PVKDHVSWNVMITAYAKRGEMAPARVL-----FNRIPERDVVSWNAMISGHVRC 253

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR-- 335
                A++L+ QM+  G +P+ +++ S+L AC D   + +GR++H  +    L+      
Sbjct: 254 GSHVYAMELFEQMQRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTGFTVI 313

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           L NAL+DMYAKCGS+  A  VF  MR +DV +W S+I    + G   +++ +F KML   
Sbjct: 314 LGNALIDMYAKCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLKEK 373

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + PD I FV+VL ACSH G++++GR YF +M   Y++ P ++H+ C+VD+LGRAG ++EA
Sbjct: 374 VRPDEITFVAVLIACSHGGMVDKGREYFNLMQHHYRIEPNVKHYGCMVDMLGRAGLLKEA 433

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
           ++ I  M +EPN  IW +L+ AC ++  +++   A   +     ++SG YVLLSNIYA A
Sbjct: 434 FEFIDTMKVEPNSVIWRTLLGACRVHGEIELAEHANRQLLKARNDESGDYVLLSNIYASA 493

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGASV 541
           G W + +++RK M+  G+ K  G +V
Sbjct: 494 GEWSESEKMRKLMDDSGVNKQAGRTV 519


>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 670

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 178/544 (32%), Positives = 296/544 (54%), Gaps = 44/544 (8%)

Query: 36  DILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNV 95
           D + +  D+++ K++HAQ++    L  N  +  K    +G    + D R+  + +   + 
Sbjct: 89  DFIQRCNDLRSFKQIHAQLL-RSTLVDNDLVVTKAANFFGK--HVTDIRYPCNFLKQFDW 145

Query: 96  VFF----NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
            F     N++I  Y      + A+ +Y+ +  +GF PD YT P VLK+C+  + +    Q
Sbjct: 146 SFSSFPCNLIISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQ 205

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           IH   VK  L  ++F  N  V +Y  CG    A +V + MP +DVV+W  +++GY + G 
Sbjct: 206 IHTLAVKTDLWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGL 265

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPS---------------------------VTNT 244
           F++A+ +   M+   + P+A T  S+L +                           V+NT
Sbjct: 266 FNDAVALFLRMD---VAPNAATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVVSNT 322

Query: 245 ------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                   E+V   K +F ++  K++VSW  MI+       P E++DL+ +M   G EP+
Sbjct: 323 LMDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPD 382

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
            + + SVL AC  L  L  GR +H Y++  +++ ++ +  +L+DMYAKCG +  A+ +F+
Sbjct: 383 GVILTSVLSACASLGLLDYGRWVHEYIDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFN 442

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
            +  +++ +W + I    ++G G +A+  F  ++ SG  P+ I F++V SAC H+GL++E
Sbjct: 443 LLPSKNIRTWNAYIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSACCHSGLVDE 502

Query: 419 GRYYFKIMTE-QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           GR YFK MT   Y L P +EH+ C+VDLL RA  VEEA +LI +MPM P+ +I G+L++A
Sbjct: 503 GRSYFKQMTSPPYNLSPWLEHYGCMVDLLCRAELVEEAMELINKMPMPPDVQIIGALLSA 562

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
              Y N+++       + +    +SG YVLLSN YA   +W +V+ VR+ M  KGI K P
Sbjct: 563 SSTYGNVELTPEMLKTVRNFECQESGVYVLLSNWYANNKKWAEVRSVRRLMKEKGISKAP 622

Query: 538 GASV 541
           G+S+
Sbjct: 623 GSSL 626


>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 167/508 (32%), Positives = 283/508 (55%), Gaps = 42/508 (8%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH---VFDEITNK 93
           +LD+   +  +K++ + + ++  L    + G  +  ++ A     D  H   +F  +  +
Sbjct: 19  LLDQCVTMAHIKQIQSHLTVSGTLFDPFAAGRII--SFCAVSAQGDISHAYLLFLSLPRR 76

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
               +N ++R++ +       L +YK M   GF P+ YT+  +L+AC+  + L  G+ +H
Sbjct: 77  TSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLH 136

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
              V++G +   F  NGL+ +Y  C C+  ARR+ +   ++DVVTW +++ GYA++G+  
Sbjct: 137 AQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQ-- 194

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273
                                              V+  +++F ++  KN VSW+ MI  
Sbjct: 195 -----------------------------------VVVARQLFDEMPEKNAVSWSAMITG 219

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           YA   +  EA++L+  M++ G  PN  ++   L AC  L AL  GR IH YV+R ++  +
Sbjct: 220 YAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLD 279

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             L  AL+DMYAKCG +  A  VFD+M  +DV ++TS+IS     G    A+ +F++M  
Sbjct: 280 RILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQN 339

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
            G+CP+ + F+ +LSACS  GL+EEG   FK MT  Y + P ++H+ CLVDLLGRAG +E
Sbjct: 340 EGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLE 399

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           +A  ++++MP+EP+  + G+L+ AC ++ ++++G    + +   + +  G +VLLSN+YA
Sbjct: 400 DAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMYA 459

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGASV 541
            A +W DV +VRK M  K +KK+PG S+
Sbjct: 460 SANQWEDVAKVRKGMEEKKVKKVPGCSL 487


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 187/519 (36%), Positives = 290/519 (55%), Gaps = 29/519 (5%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYG--ACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           +LHA  I    L ++PS+  +L+  Y       +     +FD I    +V +N+LI+ Y+
Sbjct: 33  QLHALSIKTASL-NHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYI 91

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
            N    DA+ ++  + +  F PD +T PCVLK C+   +L  G QIH  V+K+G   + F
Sbjct: 92  ENQRSNDAIALFCKL-LCDFVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKF 150

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME--- 223
             + LV+MY KCG ++  R+V + M  KDVV+WNS++ GYA+ G  + AL++  EM    
Sbjct: 151 VLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKD 210

Query: 224 --SLRIKPDADTMASLLPS---------VTNTSPENVL-----------SVKEMFLKLDN 261
             S  I  D  + +  L +         + N+   N +           + KE+F ++  
Sbjct: 211 SFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPE 270

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           ++LV+WN MI  Y  N    +A+ L+  M    I PN  ++   + A   + +L  GR +
Sbjct: 271 RSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWV 330

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
           H Y+ +   + +  L   L++MY+KCGS+  A  VF  +  + +  WTS+I   GM G  
Sbjct: 331 HSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLV 390

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
              + LF +M  +GL P +I F+ VL+ACSHAG  E+   YFK+MT  Y + P IEH+ C
Sbjct: 391 EQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGC 450

Query: 442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501
           L+D+L RAG +EEA D I++MP++ N+ IW SL++    + N+ +G  AA H+  LAP+ 
Sbjct: 451 LIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDT 510

Query: 502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           +G YV+LSN+YA AG W  V++VR+ M  KG+KK PG S
Sbjct: 511 TGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCS 549


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 180/540 (33%), Positives = 288/540 (53%), Gaps = 37/540 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           DI   K++HA +I      S+  +G  L+  Y  CG + + R +FD++  ++ + +N +I
Sbjct: 213 DIARGKEIHAHVI-RFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMI 271

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             Y  N    + L ++  M     DPD  T   V  AC   ++  +G  +H  VVK    
Sbjct: 272 SGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFG 331

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++   N L+ MY   G L+EA  V + M SKDVV+W +M+A    +    +A++  + M
Sbjct: 332 GDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMM 391

Query: 223 ESLRIKPDADTMASLLPS----------------------VTNTSPENVL---------- 250
           E   I PD  T+ S+L +                      V++    N L          
Sbjct: 392 ELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCV 451

Query: 251 -SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            +  E+F  +  KN+VSW  +I     N+   EA+  + QM+   ++PN++++ SVL AC
Sbjct: 452 DNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMK-ESMKPNSVTLISVLSAC 510

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             + AL+ G++IH +  R  +  +  L NA++DMY +CG    A   F+  + +DV +W 
Sbjct: 511 ARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTAWN 569

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
            +++ Y   GQ   AV LF KML   + PD I F+S+L ACS +G++ EG  YF IM  +
Sbjct: 570 ILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNK 629

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y L P ++H+AC+VD+LGRAG++++AYD I+ MP+ P+  IWG+L+ AC ++ N+++G +
Sbjct: 630 YNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEI 689

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           AA  +F       GYY+LL N+YA  G W  V +VR  M  +G+   PG S VE+  +V 
Sbjct: 690 AAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVH 749



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 145/523 (27%), Positives = 263/523 (50%), Gaps = 70/523 (13%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  +   G ++D  +VF +++ ++V  +NVL+  Y     + +AL++Y  M    
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             P+ YT+P VLK C+G + +  G +IH  V++ G + ++  GN L+ MY KCG +  AR
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNAR 253

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT--- 242
            + + MP +D ++WN+M++GY +NG   E L++   M  L + PD  TM ++  +     
Sbjct: 254 MLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLD 313

Query: 243 -------------------NTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIA 272
                              + S  N L             + +F ++++K++VSW  MIA
Sbjct: 314 NERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIA 373

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
              ++ +P +AV+ Y  ME+ GI P+ I++ SVL AC  +  L LG ++H    +  L  
Sbjct: 374 SLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVS 433

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           ++ + N+L+DMY+KC  +  A  VF  +  ++VVSWTS+I    ++ + ++A+  F +M 
Sbjct: 434 HVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMK 493

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGR---------------YYFKIMTEQY----KLV 433
            S + P+S+  +SVLSAC+  G L  G+               +    + + Y    + V
Sbjct: 494 ES-MKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKV 552

Query: 434 PRIEHF--------ACLVDLLGRAGKVE-----EAYDLIKQMPMEPNERIWGSLVAACCL 480
           P +  F        A  + L G A + +     E +D + ++ + P+E  + SL+ AC  
Sbjct: 553 PALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSK 612

Query: 481 YSNMDIGILAAD---HIFHLAPNQSGYYVLLSNIYAKAGRWGD 520
              +  G+   +   + ++L PN   +Y  + +I  +AG+  D
Sbjct: 613 SGMVTEGLEYFNIMKNKYNLTPNLK-HYACVVDILGRAGQLDD 654



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 80/161 (49%), Gaps = 4/161 (2%)

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           G +++  V   K    +RL NAL+ M+ + G+L +A  VF +M  +DV SW  ++  Y  
Sbjct: 116 GSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAK 175

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
           +G   +A+ L+ +ML + + P+   F SVL  C+    +  G+     +  ++     ++
Sbjct: 176 AGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVI-RFGFESDVD 234

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI-WGSLVAA 477
               L+ +  + G +  A  L  +MP    +RI W ++++ 
Sbjct: 235 VGNALITMYVKCGDISNARMLFDKMP--KRDRISWNAMISG 273


>gi|57899090|dbj|BAD86909.1| putative PPR986-12 [Oryza sativa Japonica Group]
          Length = 560

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 175/506 (34%), Positives = 287/506 (56%), Gaps = 40/506 (7%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G +   R +FDE+  ++VV +  ++  Y +N L  +AL V++ M   G  P+ YT   VL
Sbjct: 17  GAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAAPNEYTLSSVL 76

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG-CLKEARRVLNDMPS-KD 195
            AC G  +  + + +H   V+ G+D   +  N L+  Y      + +ARR+ + + S + 
Sbjct: 77  TACRGPCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSYASLAEGVVDARRLFDALGSGRT 136

Query: 196 VVTWNSMVAGYAQNGRFDEAL-----------------------------DVC--REMES 224
             +W SM+AGYA+ G+    L                             D+C  +++  
Sbjct: 137 AASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACTLVIDLCLGQQLHL 196

Query: 225 LRIKPDADTMASLLPSVTNT--SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
             IK   D   +++ S+ +   +   +L  + +F     +NL++WN MIA Y+    P  
Sbjct: 197 QCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQCD-PLM 255

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A+ L L+M     EPN  ++ S+  AC DL+AL  G+++H  V R+    +L++ NALVD
Sbjct: 256 ALQLLLEMN---DEPNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVD 312

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MY+KCGS+T A+ VFD+M C+D  SWTSMI+ YGM+G G +AV LFS M+ +G+ PD + 
Sbjct: 313 MYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVV 372

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           F+S++S+CSHAGL++EG  +F+ M  +Y L P  E +  +V+LL RAG++ EA DLI  M
Sbjct: 373 FLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGRLREALDLIDTM 432

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
           P  P+E +WG+L+ A  +++N+++G LAA  I  + P+    Y++L++IYA   +WG+  
Sbjct: 433 PFAPDEYVWGALLGASKMHNNVEMGRLAARKITEINPDDVKNYIMLASIYAAGSKWGEYA 492

Query: 523 RVRKFMNSKGIKKMPGAS-VEMNDQV 547
             R+ +   G +K  G S +E+ D++
Sbjct: 493 FTRRSLRGIGSRKEAGISWIEVMDKM 518



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 159/365 (43%), Gaps = 42/365 (11%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQ-MVDTRHVFDEI-TNKNVVFFNVLIRSYVN 107
           LHA + + + +   P +   L+ +Y +  + +VD R +FD + + +    +  +I  Y  
Sbjct: 91  LHA-VAVRRGVDRMPYVVNALIDSYASLAEGVVDARRLFDALGSGRTAASWTSMIAGYAR 149

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                  L ++K M   G +   +     L AC+    L +G Q+H   +K  LD NL  
Sbjct: 150 WGQERTGLRLFKTMLKDGVELSTFACSIALHACTLVIDLCLGQQLHLQCIKKALDVNLAV 209

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY  C  + +AR + +  P ++++TWN+M+AGY+Q      AL +  EM     
Sbjct: 210 VNSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQCDPL-MALQLLLEMND--- 265

Query: 228 KPDADTMASLLPSVTNTSP---------------------------------ENVLSVKE 254
           +P+  T+ S+  +  + +                                   ++ + K 
Sbjct: 266 EPNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCGSITNAKN 325

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F ++  K+  SW  MIA Y  N    EAV L+  M   G+ P+ +   S++ +C     
Sbjct: 326 VFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHAGL 385

Query: 315 LLLGRKIHR-YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR-CQDVVSWTSMI 372
           +  G    R  +    LQPN  +  ++V++ A+ G L EA  + D M    D   W +++
Sbjct: 386 VDEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGRLREALDLIDTMPFAPDEYVWGALL 445

Query: 373 SAYGM 377
            A  M
Sbjct: 446 GASKM 450



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 100/196 (51%), Gaps = 5/196 (2%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LH Q I  + L  N ++   L+  Y  C +++D R +FD    +N++ +N +I  Y  
Sbjct: 192 QQLHLQCI-KKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQ 250

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                D L   + +     +P+C+T   +  AC+   +L  G Q+H +V++     +L  
Sbjct: 251 ----CDPLMALQLLLEMNDEPNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQM 306

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           GN LV MY KCG +  A+ V + M  KD  +W SM+AGY  NG  +EA+ +   M    +
Sbjct: 307 GNALVDMYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGV 366

Query: 228 KPDADTMASLLPSVTN 243
            PD     SL+ S ++
Sbjct: 367 HPDHVVFLSLISSCSH 382


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 177/524 (33%), Positives = 286/524 (54%), Gaps = 35/524 (6%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
           L S+  +   L+  Y  CG +V+ + +F  +++++VV +N +I       L  DA+ +  
Sbjct: 140 LESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIM 199

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M   G  P+  T   VL     + +L  G  +H   V+   D  +  G GL+ MY KC 
Sbjct: 200 QMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQ 259

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPDADTMASLL 238
           CL  AR++ + M  ++ V+W++M+ GY  +    EAL++  +M     + P   T+ S+L
Sbjct: 260 CLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVL 319

Query: 239 ----------------------PSVTNTSPENVL-----------SVKEMFLKLDNKNLV 265
                                  SV +    N L                F +++ K+ V
Sbjct: 320 RACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSV 379

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           S++ +++    N   A A+ ++  M++ GI+P+  ++  VLPAC  L+AL  G   H Y+
Sbjct: 380 SFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYL 439

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
             +    +  + NAL+DMY+KCG ++ AR VF++M   D+VSW +MI  YG+ G G +A+
Sbjct: 440 IVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEAL 499

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
            LF  +L  GL PD I F+ +LS+CSH+GL+ EGR +F  M+  + +VPR+EH  C+VD+
Sbjct: 500 GLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDI 559

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           LGRAG ++EA+  I+ MP EP+ RIW +L++AC ++ N+++G   +  I  L P  +G +
Sbjct: 560 LGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNF 619

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           VLLSNIY+ AGRW D   +R      G+KK+PG S +E+N  V 
Sbjct: 620 VLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVH 663



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 144/453 (31%), Positives = 239/453 (52%), Gaps = 44/453 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           KK+H   + N   +++ S+  KL R Y +C Q+V  R +FDEI N +V+ +N +IR+Y  
Sbjct: 28  KKIHQHFLKNTS-NADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAW 86

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N  +  A+ +Y +M   G  P+ YTYP VLKACSG  ++  G++IH      GL+ ++F 
Sbjct: 87  NGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFV 146

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              LV  Y KCG L EA+R+ + M  +DVV WN+M+AG +  G  D+A+ +  +M+   I
Sbjct: 147 CTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGI 206

Query: 228 KPDADTMASLLPSVTNTSP---------------------------------ENVLSVKE 254
            P++ T+  +LP+V                                      + +L  ++
Sbjct: 207 CPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARK 266

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVASVLPACGDLS 313
           +F  +  +N VSW+ MI  Y  +    EA++L+ QM +   ++P  +++ SVL AC  L+
Sbjct: 267 IFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLT 326

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
            L  GRK+H Y+ +     ++ L N L+ MYAKCG + +A   FD+M  +D VS+++++S
Sbjct: 327 DLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVS 386

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
               +G    A+++F  M +SG+ PD    + VL ACSH   L+ G       +  Y +V
Sbjct: 387 GCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG-----FCSHGYLIV 441

Query: 434 PRI--EHFAC--LVDLLGRAGKVEEAYDLIKQM 462
                +   C  L+D+  + GK+  A ++  +M
Sbjct: 442 RGFATDTLICNALIDMYSKCGKISFAREVFNRM 474



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 162/358 (45%), Gaps = 43/358 (12%)

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNT--SPENVLSVKEMFLKLDNKNLVSWNVMI 271
           ++L   +++    +K  ++  +S+L  +T    S   V+  + +F ++ N +++ WN +I
Sbjct: 22  KSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQII 81

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
             YA N     A+DLY  M   G+ PN  +   VL AC  L A+  G +IH + +   L+
Sbjct: 82  RAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLE 141

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            ++ +  ALVD YAKCG L EA+ +F  M  +DVV+W +MI+   + G   DAV L  +M
Sbjct: 142 SDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQM 201

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEG---------RYYFKIMTEQYKLVPRIEHFACL 442
              G+CP+S   V VL     A  L  G         R +   +     L+       CL
Sbjct: 202 QEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCL 261

Query: 443 V------DLLGRAGKV---------------EEAYDLIKQM----PMEPNERIWGSLVAA 477
           +      D++G   +V               +EA +L  QM     M+P     GS++ A
Sbjct: 262 LYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRA 321

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSN----IYAKAGRWGDVKRVRKFMNSK 531
           C   +++  G     +I  L    S   +LL N    +YAK G   D  R    MN K
Sbjct: 322 CAKLTDLSRGRKLHCYIIKLG---SVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPK 376



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 104/208 (50%), Gaps = 5/208 (2%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSI--GLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
           K  D+   +KLH  II    L S   I  G  L+  Y  CG + D    FDE+  K+ V 
Sbjct: 324 KLTDLSRGRKLHCYII---KLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVS 380

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           F+ ++   V N     AL +++ M + G DPD  T   VL ACS   +L  G   H  ++
Sbjct: 381 FSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI 440

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
             G   +    N L+ MY KCG +  AR V N M   D+V+WN+M+ GY  +G   EAL 
Sbjct: 441 VRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALG 500

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTS 245
           +  ++ +L +KPD  T   LL S +++ 
Sbjct: 501 LFHDLLALGLKPDDITFICLLSSCSHSG 528



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 6/183 (3%)

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           +L AC    +L   +KIH++  +     +  + + L  +Y  C  +  AR +FD++    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
           V+ W  +I AY  +G    A+ L+  ML  G+ P+   +  VL ACS    +E+G    +
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG---VE 130

Query: 425 IMTEQYKLVPRIEHFAC--LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           I +         + F C  LVD   + G + EA  L   M    +   W +++A C LY 
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLYG 189

Query: 483 NMD 485
             D
Sbjct: 190 LCD 192


>gi|125525521|gb|EAY73635.1| hypothetical protein OsI_01524 [Oryza sativa Indica Group]
          Length = 560

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 175/506 (34%), Positives = 287/506 (56%), Gaps = 40/506 (7%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G +   R +FDE+  ++VV +  ++  Y +N L  +AL V++ M   G  P+ YT   VL
Sbjct: 17  GAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAAPNEYTLSSVL 76

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG-CLKEARRVLNDMPS-KD 195
            AC G  +  + + +H   V+ G+D   +  N L+  Y      + +ARR+ + + S + 
Sbjct: 77  TACRGPCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSYASLAEGVVDARRLFDALGSGRT 136

Query: 196 VVTWNSMVAGYAQNGRFDEAL-----------------------------DVC--REMES 224
             +W SM+AGYA+ G+    L                             D+C  +++  
Sbjct: 137 AASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACTLVIDLCLGQQLHL 196

Query: 225 LRIKPDADTMASLLPSVTNT--SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
             IK   D   +++ S+ +   +   +L  + +F     +NL++WN MIA Y+    P  
Sbjct: 197 QCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQCD-PLM 255

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A+ L L+M     EPN  ++ S+  AC DL+AL  G+++H  V R+    +L++ NALVD
Sbjct: 256 ALQLLLEMN---DEPNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVD 312

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MY+KCGS+T A+ VFD+M C+D  SWTSMI+ YGM+G G +AV LFS M+ +G+ PD + 
Sbjct: 313 MYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVV 372

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           F+S++S+CSHAGL++EG  +F+ M  +Y L P  E +  +V+LL RAG++ EA DLI  M
Sbjct: 373 FLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGRLREALDLIDTM 432

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
           P  P+E +WG+L+ A  +++N+++G LAA  I  + P+    Y++L++IYA   +WG+  
Sbjct: 433 PFAPDEYVWGALLGASKMHNNVEMGRLAARKITEINPDDVKNYIMLASIYAAGSKWGEYA 492

Query: 523 RVRKFMNSKGIKKMPGAS-VEMNDQV 547
             R+ +   G +K  G S +E+ D++
Sbjct: 493 FTRRSLRGIGSRKEAGISWIEVMDKM 518



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 159/365 (43%), Gaps = 42/365 (11%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQ-MVDTRHVFDEI-TNKNVVFFNVLIRSYVN 107
           LHA + + + +   P +   L+ +Y +  + +VD R +FD + + +    +  +I  Y  
Sbjct: 91  LHA-VAVRRGVDRMPYVVNALIDSYASLAEGVVDARRLFDALGSGRTAASWTSMIAGYAR 149

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                  L ++K M   G +   +     L AC+    L +G Q+H   +K  LD NL  
Sbjct: 150 WGQERTGLRLFKTMLKDGVELSTFACSIALHACTLVIDLCLGQQLHLQCIKKALDVNLAV 209

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY  C  + +AR + +  P ++++TWN+M+AGY+Q      AL +  EM     
Sbjct: 210 VNSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQCDPL-MALQLLLEMND--- 265

Query: 228 KPDADTMASLLPSVTNTSP---------------------------------ENVLSVKE 254
           +P+  T+ S+  +  + +                                   ++ + K 
Sbjct: 266 EPNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCGSITNAKN 325

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F ++  K+  SW  MIA Y  N    EAV L+  M   G+ P+ +   S++ +C     
Sbjct: 326 VFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHAGL 385

Query: 315 LLLGRKIHR-YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR-CQDVVSWTSMI 372
           +  G    R  +    LQPN  +  ++V++ A+ G L EA  + D M    D   W +++
Sbjct: 386 VDEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGRLREALDLIDTMPFAPDEYVWGALL 445

Query: 373 SAYGM 377
            A  M
Sbjct: 446 GASKM 450



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 100/196 (51%), Gaps = 5/196 (2%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LH Q I  + L  N ++   L+  Y  C +++D R +FD    +N++ +N +I  Y  
Sbjct: 192 QQLHLQCI-KKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQ 250

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                D L   + +     +P+C+T   +  AC+   +L  G Q+H +V++     +L  
Sbjct: 251 ----CDPLMALQLLLEMNDEPNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQM 306

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           GN LV MY KCG +  A+ V + M  KD  +W SM+AGY  NG  +EA+ +   M    +
Sbjct: 307 GNALVDMYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGV 366

Query: 228 KPDADTMASLLPSVTN 243
            PD     SL+ S ++
Sbjct: 367 HPDHVVFLSLISSCSH 382


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 180/540 (33%), Positives = 288/540 (53%), Gaps = 37/540 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           DI   K++HA +I      S+  +G  L+  Y  CG + + R +FD++  ++ + +N +I
Sbjct: 213 DIARGKEIHAHVI-RFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMI 271

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             Y  N    + L ++  M     DPD  T   V  AC   ++  +G  +H  VVK    
Sbjct: 272 SGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFG 331

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++   N L+ MY   G L+EA  V + M SKDVV+W +M+A    +    +A++  + M
Sbjct: 332 GDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMM 391

Query: 223 ESLRIKPDADTMASLLPS----------------------VTNTSPENVL---------- 250
           E   I PD  T+ S+L +                      V++    N L          
Sbjct: 392 ELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCV 451

Query: 251 -SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            +  E+F  +  KN+VSW  +I     N+   EA+  + QM+   ++PN++++ SVL AC
Sbjct: 452 DNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMK-ESMKPNSVTLISVLSAC 510

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             + AL+ G++IH +  R  +  +  L NA++DMY +CG    A   F+  + +DV +W 
Sbjct: 511 ARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTAWN 569

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
            +++ Y   GQ   AV LF KML   + PD I F+S+L ACS +G++ EG  YF IM  +
Sbjct: 570 ILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNK 629

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y L P ++H+AC+VD+LGRAG++++AYD I+ MP+ P+  IWG+L+ AC ++ N+++G +
Sbjct: 630 YNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEI 689

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           AA  +F       GYY+LL N+YA  G W  V +VR  M  +G+   PG S VE+  +V 
Sbjct: 690 AAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVH 749



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 145/523 (27%), Positives = 263/523 (50%), Gaps = 70/523 (13%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  +   G ++D  +VF +++ ++V  +NVL+  Y     + +AL++Y  M    
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             P+ YT+P VLK C+G + +  G +IH  V++ G + ++  GN L+ MY KCG +  AR
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNAR 253

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT--- 242
            + + MP +D ++WN+M++GY +NG   E L++   M  L + PD  TM ++  +     
Sbjct: 254 MLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLD 313

Query: 243 -------------------NTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIA 272
                              + S  N L             + +F ++++K++VSW  MIA
Sbjct: 314 NERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIA 373

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
              ++ +P +AV+ Y  ME+ GI P+ I++ SVL AC  +  L LG ++H    +  L  
Sbjct: 374 SLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVS 433

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           ++ + N+L+DMY+KC  +  A  VF  +  ++VVSWTS+I    ++ + ++A+  F +M 
Sbjct: 434 HVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMK 493

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGR---------------YYFKIMTEQY----KLV 433
            S + P+S+  +SVLSAC+  G L  G+               +    + + Y    + V
Sbjct: 494 ES-MKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKV 552

Query: 434 PRIEHF--------ACLVDLLGRAGKVE-----EAYDLIKQMPMEPNERIWGSLVAACCL 480
           P +  F        A  + L G A + +     E +D + ++ + P+E  + SL+ AC  
Sbjct: 553 PALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSK 612

Query: 481 YSNMDIGILAAD---HIFHLAPNQSGYYVLLSNIYAKAGRWGD 520
              +  G+   +   + ++L PN   +Y  + +I  +AG+  D
Sbjct: 613 SGMVTEGLEYFNIMKNKYNLTPNLK-HYACVVDILGRAGQLDD 654



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 80/161 (49%), Gaps = 4/161 (2%)

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           G +++  V   K    +RL NAL+ M+ + G+L +A  VF +M  +DV SW  ++  Y  
Sbjct: 116 GSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAK 175

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
           +G   +A+ L+ +ML + + P+   F SVL  C+    +  G+     +  ++     ++
Sbjct: 176 AGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVI-RFGFESDVD 234

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI-WGSLVAA 477
               L+ +  + G +  A  L  +MP    +RI W ++++ 
Sbjct: 235 VGNALITMYVKCGDISNARMLFDKMP--KRDRISWNAMISG 273


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 175/515 (33%), Positives = 271/515 (52%), Gaps = 40/515 (7%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPS-IGLKLMRTYGACGQMVDTRHVFDEITNKNV 95
           +L K   ++ LK++H + +    L S    +  KL+ TY   G  VD + VF+ I N ++
Sbjct: 260 LLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDI 319

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
           V +  LI  Y++      A  ++ ++   G  PD +     + AC     L  G  +H  
Sbjct: 320 VSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGM 379

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           V +  L  +   GN L+ MY + G ++ A  V   M  KDV +W S++ G+ +       
Sbjct: 380 VFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIK------- 432

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
              C ++E+ R                            +F ++  +N VSW  MI  Y 
Sbjct: 433 ---CNDIEAAR---------------------------RIFDEMPMRNSVSWTAMITGYV 462

Query: 276 NNSMPAEAVDLYLQMEVHGIE-PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
              +P   ++L+ +M   G + P  I++ +VL  C D+ A  LG  +H YV +  L  ++
Sbjct: 463 QGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDV 522

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + NAL+DMYAK G+L  A  +F +M  +DV SWT+MIS   + G+G  A+  FS M  S
Sbjct: 523 TVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKS 582

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           G  P+ +  +SVLSACSHAGL+ EGR  F+ M + + + P+I+H+ C+VDLLGRAG + E
Sbjct: 583 GXXPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLRE 642

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A +LI+ MP++P+  IW SL++AC ++ N+ +  +A   I  L P+  G Y+LL NIY  
Sbjct: 643 AKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCS 702

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           A RW D  + RK M  + +KK PG S VE+N  V 
Sbjct: 703 ASRWEDALKARKAMRDRRVKKKPGCSWVEVNGVVH 737


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 167/516 (32%), Positives = 289/516 (56%), Gaps = 41/516 (7%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N +++ Y   K  K++ A+ + ++    N      ++  Y   G +   R +FD++  K+
Sbjct: 99  NHLINMYA--KCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKD 156

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
           VV +N ++ ++     + +AL  Y      G   + +++  VL  C     + +  Q+H 
Sbjct: 157 VVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHG 216

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            ++  G   N+   + ++  Y KCG + +AR++ ++M ++DV+ W +MV+GYA+ G    
Sbjct: 217 QILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWG---- 272

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
                                            ++ S  E+F+++  KN VSW  +I+ Y
Sbjct: 273 ---------------------------------DMKSANELFVEMPEKNPVSWTALISGY 299

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           A N M  +A++L+ +M +  + P+  + +S L AC  +++L  G++IH Y+ R   QPN 
Sbjct: 300 ARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNT 359

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
            + +AL+DMY+KCGSL   R VFD M  + DVV W ++ISA    G G +A+ +   M+ 
Sbjct: 360 IVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVR 419

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           SG  PD I FV +L+ACSH+GL+++G  +F+ M+  Y +VP  EH+ACL+DLLGRAG  E
Sbjct: 420 SGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFE 479

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           E  D +++MP +P++R+W +L+  C ++ ++++G  AA+ +  L P  S  YVLLS+IYA
Sbjct: 480 EVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSIYA 539

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
             GRW  V++VR+ MN + +KK    S +E+ ++V 
Sbjct: 540 VLGRWESVQKVRQLMNERQVKKERAISWLEIENKVH 575


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 178/520 (34%), Positives = 286/520 (55%), Gaps = 43/520 (8%)

Query: 27  TLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIG--LKLMRTYGACGQMVDTR 84
           T +S +    +LDK   +  L+++HAQ+I    L+   ++   +      G  G +    
Sbjct: 2   TAISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYAS 61

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDC-YTYPCVLKACSG 142
            VF  I + N   F  LI+ + +     ++L +Y  M S   +     ++ P VLKAC  
Sbjct: 62  SVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGK 121

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
             +   G Q+H  V+K  L ++ F GN +V MY   G ++ ARRV + MP++DVV+WNSM
Sbjct: 122 LLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSM 181

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK 262
           +AGY + G  + A                                     K++F  + +K
Sbjct: 182 IAGYLKAGEIELA-------------------------------------KKVFETMSDK 204

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH 322
           ++V+W  MI+ Y  N  P +A+DL+ +M   G+ P+  ++ SVL A  DL  +  G+ +H
Sbjct: 205 DVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLH 264

Query: 323 RYVERKKLQ-PNLRLENALVDMYAKCGSLTEARTVFDQM-RCQDVVSWTSMISAYGMSGQ 380
            YV   K++  +  + +AL+DMY+KCG +  A  VF  +   +++  W SMIS   + G 
Sbjct: 265 AYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGL 324

Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA 440
             +A+ +F +M    + P+ I F+ +LS CSH GL+EEG++YF+ M E+YK+VPRI+H+ 
Sbjct: 325 AREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYG 384

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500
           C++DL GRAG++E+A  +I+ MP E +   W ++++A   + +++IG  AA     LAP+
Sbjct: 385 CMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPD 444

Query: 501 QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            S  YVLLSNIYAKAGRW DV ++R  M  +G+KK+ G S
Sbjct: 445 DSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCS 484


>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
           [Vitis vinifera]
 gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 172/532 (32%), Positives = 286/532 (53%), Gaps = 40/532 (7%)

Query: 55  IINQHLHSNPSIGLKLMRT----------YGACGQMVDTRHVFDEITNKNVVFF-NVLIR 103
           ++   L +NP++  K + T          Y     +V  R +FD   +++  F  N +I+
Sbjct: 1   MLRNALETNPNLFTKFIATCSSIALLAPLYDPLAGIVHARRMFDHRPHRDDAFLCNSMIK 60

Query: 104 SYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
           +YV    Y ++  +Y+++  +  F PD +T+  + K+C+ + ++  G +IH  VV VG  
Sbjct: 61  AYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFC 120

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL------ 216
            +L+    LV MY K G +  AR++ ++M  +  V+W +++ GY ++G  D A       
Sbjct: 121 LDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM 180

Query: 217 -------------------DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
                              D+C   +     P+   ++  +     +S  N+ S + +F 
Sbjct: 181 IEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFD 240

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME-VHGIEPNAISVASVLPACGDLSALL 316
            +  KNL SWN MI+ Y  N  P EA+ L+ +M+    +EP+ +++ SVLPA  DL AL 
Sbjct: 241 AMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALD 300

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
           LG  +HR+V RKKL     +  AL+DMYAKCG + ++R VFD M  ++  SW ++I+A+ 
Sbjct: 301 LGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFA 360

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
           ++G+  +A+ LF +M   G  P+ I  + VLSAC+H+GL+EEG+ +FK M E++ L P+I
Sbjct: 361 INGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAM-EEFGLTPKI 419

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           EH+ C+VDLLGRAG ++EA  L++ MP E N  I  S + AC    ++            
Sbjct: 420 EHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIK 479

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           +     G Y++L N+YA   RW +   V+  M   G+KK  G S +E++ +V
Sbjct: 480 MEAWNDGNYIMLRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRV 531


>gi|297741017|emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 194/580 (33%), Positives = 308/580 (53%), Gaps = 69/580 (11%)

Query: 1   MKAVVLLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHL 60
            K V L+  H S+    Q L++    +LLS  +C D+      +   ++LH  II +   
Sbjct: 81  FKTVSLIRLHASSAS--QDLIVHPISSLLS--SCTDV----KSLAEGRQLHGHII-SLGF 131

Query: 61  HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF---FNVLIRSYVNNYLYYDALHV 117
             +P +  KL+  Y A   +VD  HV  E  N N++    +N+LI SYV N     AL  
Sbjct: 132 EQHPILVPKLVTFYSAFNLLVDA-HVITE--NSNILHPFPWNLLISSYVRNGFCQKALSA 188

Query: 118 YKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK 177
           YK M   G  PD +TYP VLKAC     L  G ++H S+                ++Y  
Sbjct: 189 YKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESIN--------------ASLYAS 234

Query: 178 CGCLKEARRVLNDMPSKDV----VTWNSMVAGYAQNGRFDEALDVC-------------- 219
            G   EA  +   M ++D+    + WN++  GY + G +  AL++               
Sbjct: 235 MGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVA 294

Query: 220 -----------------REMESLRIKP---DADTMASLLPSVTNTSPENVLSVKEMFLKL 259
                            +E+ S  I+    + DT+ + L ++ +   +++     +F  +
Sbjct: 295 LIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRC-KDLKHAYLLFQLM 353

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
           + K+L++WN +I+   +     EA  L  +M + GIEPN +++ASVLP C  ++ L  G+
Sbjct: 354 EAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGK 413

Query: 320 KIHRYVERKK-LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           + H Y+ R++  + +L L NALVDMYA+ G + EAR VFD +  +D +++TSMI+ YGM 
Sbjct: 414 EFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQ 473

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           G+G  A+ LF +M    + PD I  ++VLSACSH+GL+ +G+  F+ M   Y L P +EH
Sbjct: 474 GEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEH 533

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
           FAC+ DL GRAG + +A ++I+ MP +P   +W +L+ AC ++ N +IG  AA+ +  + 
Sbjct: 534 FACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMK 593

Query: 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
           P   GYYVL++N+YA AG W  + +VR FM   G++K PG
Sbjct: 594 PENPGYYVLIANMYAAAGCWNKLAKVRIFMRDLGVRKAPG 633


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 207/635 (32%), Positives = 322/635 (50%), Gaps = 107/635 (16%)

Query: 2   KAVVLLCRHF-STTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHL 60
           +A+ + CR   + TKP      +  Y L    AC ++    P     + LH  I  N   
Sbjct: 132 RAIGVSCRMLRAGTKPDH---FTLPYAL---KACGEL----PSYCCGRALHGLICCNG-F 180

Query: 61  HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK---NVVFFNVLIRSYVNNYLYYDALHV 117
            SN  +   L+  Y  CG + D   VFDEIT K   +V+ +N ++ ++V       AL +
Sbjct: 181 ESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALEL 240

Query: 118 YKNMS--VH----GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGL 171
           +  MS  VH        D  +   +L AC+   +L    +IH   ++ G   + F  N L
Sbjct: 241 FSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNAL 300

Query: 172 VAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV---------------------------- 203
           +  Y KCG + +A +V N M  KDVV+WN+MV                            
Sbjct: 301 IDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDV 360

Query: 204 -------AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS------VTNTSPENVL 250
                  AGYAQ G   EALD  ++M     +P++ T+ SLL +      ++     +  
Sbjct: 361 ITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAY 420

Query: 251 SVKEMFLKLD-----------------------------------------NKNLVSWNV 269
           S+K+  L LD                                          +N+V+W V
Sbjct: 421 SLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTV 480

Query: 270 MIAVYANNSMPAEAVDLYLQM--EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
           MI  YA      +A+ ++ +M  + + + PNA +++ +L AC  L+AL +G++IH YV R
Sbjct: 481 MIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTR 540

Query: 328 K-KLQPNLRL-ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
             + +P++    N L+DMY+KCG +  AR VFD M  ++ VSWTSM+S YGM G+G +A+
Sbjct: 541 HHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEAL 600

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
            +F KM  +G  PD I+F+ +L ACSH+G++++G  YF IM   Y +V   EH+AC++DL
Sbjct: 601 DIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDL 660

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           L R G++++A+  I++MPMEP+  IW +L++AC ++SN+++   A + + ++     G Y
Sbjct: 661 LARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSY 720

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            L+SNIYA A RW DV R+R+ M   GIKK PG S
Sbjct: 721 TLISNIYANARRWKDVARIRQLMKKSGIKKRPGCS 755



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 152/555 (27%), Positives = 250/555 (45%), Gaps = 116/555 (20%)

Query: 37  ILDKYPDIKTLKKLHAQII------------------INQHLHSNP-SIGLKLMRTYGAC 77
           +L +   + T++++H +II                  +  H + +P S+G  ++ +Y AC
Sbjct: 37  LLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTGVVASYLAC 96

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G   D   V + +T    V++N+L+R ++       A+ V   M   G  PD +T P  L
Sbjct: 97  GATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYAL 156

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK--- 194
           KAC    S   G  +H  +   G + N+F  N LVAMY +CG L++A  V +++  K   
Sbjct: 157 KACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGID 216

Query: 195 DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP-----ENV 249
           DV++WNS+VA + +      AL++  EM S+ +   A    S + S+ N  P     + +
Sbjct: 217 DVISWNSIVAAHVKGSNPRTALELFSEM-SMIVHEKATNERSDIISIVNILPACASLKAL 275

Query: 250 LSVKEM-----------------------------------FLKLDNKNLVSWNVM---- 270
             +KE+                                   F  ++ K++VSWN M    
Sbjct: 276 PQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGY 335

Query: 271 -------------------------------IAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                                          IA YA      EA+D + QM + G EPN+
Sbjct: 336 TQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNS 395

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKL------------QPNLRLENALVDMYAKC 347
           +++ S+L AC  L AL  G +IH Y  +K L              +L + NAL+DMY+KC
Sbjct: 396 VTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKC 455

Query: 348 GSLTEARTVFDQM--RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS--GLCPDSIAF 403
            S   AR++FD +  R ++VV+WT MI  Y   G   DA+ +FS+M+     + P++   
Sbjct: 456 RSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTI 515

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA-CLVDLLGRAGKVEEAYDLIKQM 462
             +L AC+H   L  G+     +T  ++  P +   A CL+D+  + G V+ A ++   M
Sbjct: 516 SCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSM 575

Query: 463 PMEPNERIWGSLVAA 477
           P + NE  W S+++ 
Sbjct: 576 P-KRNEVSWTSMMSG 589


>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
 gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
          Length = 772

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 181/551 (32%), Positives = 288/551 (52%), Gaps = 42/551 (7%)

Query: 27  TLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHV 86
           T+ SG     +LD+    + L     ++ +      +P +   L   Y  C    D   +
Sbjct: 221 TMESGLEACGVLDELNSGRCLHGYAVKVGVGD----SPMVISALFSMYSKCHSTEDACSL 276

Query: 87  FDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL 146
           F E+  K+VV +  LI  Y    L  +A+ +++ M   G  PD     C+L     S ++
Sbjct: 277 FPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGLGNSGNV 336

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY 206
             G   H  ++K     N+  GN L++MYGK   +  A RV   +  +D  +WN M+ GY
Sbjct: 337 HGGKAFHAVIMKRNFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDADSWNLMIVGY 396

Query: 207 AQNGRFDEALDVCREME---SLRIKPDADTMASLLPSVT--------------------- 242
            + G   + L++ REM+   +     DA+++ S + S +                     
Sbjct: 397 CKAGCDVKCLELYREMQFRDTYEFLCDANSLVSAISSCSRLVELRLGRSAHCYSIKHWLD 456

Query: 243 -NTSPENVL------------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
            ++S  NVL            + K   L     ++V+WN +I+ YA+      AV LY Q
Sbjct: 457 EDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNTAVSLYDQ 516

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M   G+ PN+ ++ +V+ AC +L AL  G KIH YV+      ++ +  AL+DMYAKCG 
Sbjct: 517 MLTEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQ 576

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           L  AR +FD M   DVV+W  MIS YGM G+   A+ LF KM    + P+ + F+++LSA
Sbjct: 577 LGTARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNGVTFLAILSA 636

Query: 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNER 469
           C H+GLLEEGR  F  M  +Y L P ++H+AC+VDLLG++G ++EA D++  MP+EP+  
Sbjct: 637 CCHSGLLEEGRQLFTRMG-KYSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMPVEPDGG 695

Query: 470 IWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529
           IWG+L++AC L+ + ++G+  A   F       GYY+L+SN Y  A +W +++++R+ M 
Sbjct: 696 IWGTLLSACKLHDDFEMGLRIAKKAFASDAENEGYYILISNSYGSAKKWDEIEKLREAMK 755

Query: 530 SKGIKKMPGAS 540
           + G++K  G S
Sbjct: 756 NHGVQKGAGWS 766



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 132/523 (25%), Positives = 230/523 (43%), Gaps = 77/523 (14%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD-- 127
           L+  Y  CG + D   +F+E+  ++VV +  ++   V N    D L     M     D  
Sbjct: 155 LVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVSGCVRNGECGDGLRYLVEMVRLAGDGK 214

Query: 128 --PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             P+  T    L+AC   + L  G  +H   VKVG+  +    + L +MY KC   ++A 
Sbjct: 215 ARPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYSKCHSTEDAC 274

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            +  ++P KDVV+W S++  Y   G   EA+++ +EM    ++PD   ++ LL  + N+ 
Sbjct: 275 SLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGLGNSG 334

Query: 246 -----------------PENVL----------------SVKEMFLKLDNKNLVSWNVMIA 272
                             +NVL                +   +F  L  ++  SWN+MI 
Sbjct: 335 NVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDADSWNLMIV 394

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEP---NAISVASVLPACGDLSALLLGRKIHRYVERKK 329
            Y       + ++LY +M+         +A S+ S + +C  L  L LGR  H Y  +  
Sbjct: 395 GYCKAGCDVKCLELYREMQFRDTYEFLCDANSLVSAISSCSRLVELRLGRSAHCYSIKHW 454

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYDAVALF 388
           L  +  + N L+ MY +CG    A  +F   + + DVV+W ++IS+Y   G    AV+L+
Sbjct: 455 LDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNTAVSLY 514

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR---YYFKIMTEQYKL---VPRIEHFA-- 440
            +ML  GL P+S   ++V+SAC++   LE G     Y K M   Y +      I+ +A  
Sbjct: 515 DQMLTEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTALIDMYAKC 574

Query: 441 ----------------------CLVDLLGRAGKVEEAYDLIKQM---PMEPNERIWGSLV 475
                                  ++   G  G+ ++A +L  +M    ++PN   + +++
Sbjct: 575 GQLGTARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNGVTFLAIL 634

Query: 476 AACCLYSNMDIG--ILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           +ACC    ++ G  +      + L PN   +Y  + ++  K+G
Sbjct: 635 SACCHSGLLEEGRQLFTRMGKYSLEPNLK-HYACMVDLLGKSG 676



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/514 (23%), Positives = 223/514 (43%), Gaps = 58/514 (11%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           L ++HA + +   L   P I  KL+  Y + G+       F      +   +N LIR++ 
Sbjct: 28  LLRVHA-LAVTSGLSQRPDIVAKLVSAYSSAGRPGLAALAFSACPRPDAFLWNSLIRTHH 86

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL----D 162
               +  AL+ ++ M      P  +T P    A +   +L VG  +H   V+ GL     
Sbjct: 87  CASDFVAALNAHRRMLASSARPSPFTVPLAASAAAELGALGVGASVHAYCVRYGLLAVDG 146

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++   + LV MY +CG +++A ++  +M  +DVV W ++V+G  +NG   + L    EM
Sbjct: 147 GSVAVPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVSGCVRNGECGDGLRYLVEM 206

Query: 223 ESL----RIKPDADTMASLLPSV--------------------TNTSPENVLSVKEMFLK 258
             L    + +P++ TM S L +                        SP  + ++  M+ K
Sbjct: 207 VRLAGDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYSK 266

Query: 259 -------------LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                        L  K++VSW  +I +Y    +  EA++L+ +M   G++P+ + V+ +
Sbjct: 267 CHSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCL 326

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L   G+   +  G+  H  + ++    N+ + NAL+ MY K   +  A  VF  +  +D 
Sbjct: 327 LSGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDA 386

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSG----LCPDSIAFVSVLSACSHAGLLEEGR- 420
            SW  MI  Y  +G     + L+ +M        LC D+ + VS +S+CS    L  GR 
Sbjct: 387 DSWNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLC-DANSLVSAISSCSRLVELRLGRS 445

Query: 421 ---YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
              Y  K   ++   V  +     L+ + GR GK + A  +     ++ +   W +L+++
Sbjct: 446 AHCYSIKHWLDEDSSVANV-----LIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISS 500

Query: 478 CCLYSNMDIGILAADHIF--HLAPNQSGYYVLLS 509
                + +  +   D +    L PN +    ++S
Sbjct: 501 YAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVIS 534


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 179/521 (34%), Positives = 280/521 (53%), Gaps = 73/521 (14%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           IL   P+I  LKK+HA I+    L  +  +  K++      G+      +F  + + N  
Sbjct: 65  ILKDCPNIVELKKIHAHIV-KFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAF 123

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNM--SVHGFDP---DCYTYPCVLKACSGSNSLLVGLQ 151
            +N +IR+Y +N +Y  A+ VYK M  + HG +P   D +T+P V+K+C+G     +G Q
Sbjct: 124 LYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQ 183

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H  V K G   N                                V  NS+V  Y +   
Sbjct: 184 VHGHVFKFGQKSN-------------------------------TVVENSLVEMYVKCDS 212

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
            D+A  V  EM                                      +  + SW  ++
Sbjct: 213 LDDAHRVFEEMTE-----------------------------------RDATIFSWTAIV 237

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           + YA     A+A++ + +M++ GIEP+ IS+ SVLP C  L AL LG+ IH Y ++    
Sbjct: 238 SGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFL 297

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            N+ + NAL++MYAKCGS+ + R +FDQM+ +DV+SW++MI      G+  +A+ LF +M
Sbjct: 298 RNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEM 357

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
             + + P  I FV +L+AC+HAGLL EG  YF+ M   Y + P +EH+ CLV+LLG +G+
Sbjct: 358 QKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGR 417

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
           +++A +L+K+MP +P+  IWGSL+++C  + N+ I ++A +H+  L P  +G YVLLSN+
Sbjct: 418 LDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNL 477

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQIIA 551
           YA  G+W  V R+RK M SK +KK PG +S+E+++ VQ  A
Sbjct: 478 YADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFA 518


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 165/512 (32%), Positives = 274/512 (53%), Gaps = 34/512 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G++     VF ++T +NVV +  +I   V+     +AL  +  M +     D
Sbjct: 198 LIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYD 257

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +T+   LKA + S+ L  G  IH   +K G D + F  N L  MY KCG      R+  
Sbjct: 258 SHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFE 317

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE-- 247
            M   DVV+W +++  Y Q G  + A++  + M    + P+  T A+++ +  N +    
Sbjct: 318 KMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKW 377

Query: 248 --------------NVLSVKE-----------------MFLKLDNKNLVSWNVMIAVYAN 276
                         + LSV                   +F  +  K+++SW+ +IAVY+ 
Sbjct: 378 GEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQ 437

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
                EA D    M   G +PN  +++SVL  CG ++ L  G+++H +V    +     +
Sbjct: 438 GGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMV 497

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            +AL+ MY+KCGS+ EA  +F+ M+  +++SWT+MI+ Y   G   +A+ LF K+   GL
Sbjct: 498 HSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKISSVGL 557

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PD + F+ VL+ACSHAG+++ G YYF +MT +Y++ P  EH+ C++DLL RAG++ EA 
Sbjct: 558 KPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAE 617

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
            +I+ MP   ++ +W +L+ +C ++ ++D G   A+ +  L PN +G ++ L+NIYA  G
Sbjct: 618 HMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIALANIYAAKG 677

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           RW +   +RK M SKG+ K  G S V +ND++
Sbjct: 678 RWKEAAHIRKLMKSKGVIKERGWSWVNVNDKL 709



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/425 (28%), Positives = 200/425 (47%), Gaps = 43/425 (10%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCV 136
           GQ+  +R++FD++T+++ + +  LI  YVN    Y+AL ++ NM V  G   D +     
Sbjct: 104 GQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVA 163

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDV 196
           LKAC    ++  G  +H   VK GL  ++F  + L+ MY K G +++  RV   M  ++V
Sbjct: 164 LKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNV 223

Query: 197 VTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS----------- 245
           V+W +++AG    G   EAL    EM   ++  D+ T A  L +  ++S           
Sbjct: 224 VSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQ 283

Query: 246 -----------PENVLS-----------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
                        N L+           V  +F K+   ++VSW  +I  Y        A
Sbjct: 284 TIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHA 343

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
           V+ + +M    + PN  + A+V+ AC +L+    G +IH +V R  L   L + N++V +
Sbjct: 344 VEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTL 403

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
           Y+K G L  A  VF  +  +D++SW+++I+ Y   G   +A    S M   G  P+  A 
Sbjct: 404 YSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFAL 463

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA----CLVDLLGRAGKVEEAYDLI 459
            SVLS C    LLE+G+         + L   I+H A     L+ +  + G VEEA  + 
Sbjct: 464 SSVLSVCGSMALLEQGK-----QVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIF 518

Query: 460 KQMPM 464
             M +
Sbjct: 519 NGMKI 523



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 163/360 (45%), Gaps = 36/360 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +H Q I  Q    +  +   L   Y  CG+      +F+++   +VV +  LI +YV 
Sbjct: 278 KAIHTQTI-KQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQ 336

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                 A+  +K M      P+ YT+  V+ AC+       G QIH  V+++GL   L  
Sbjct: 337 KGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSV 396

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N +V +Y K G LK A  V + +  KD+++W++++A Y+Q G   EA D    M     
Sbjct: 397 ANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGP 456

Query: 228 KPDADTMASLLPSVTNTS--------PENVL----------------------SVKE--- 254
           KP+   ++S+L    + +          +VL                      SV+E   
Sbjct: 457 KPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASK 516

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F  +   N++SW  MI  YA +    EA++L+ ++   G++P+ ++   VL AC     
Sbjct: 517 IFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGM 576

Query: 315 LLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-QDVVSWTSMI 372
           + LG      +  + ++ P+      ++D+  + G L+EA  +   M C  D V W++++
Sbjct: 577 VDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLL 636



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 134/274 (48%), Gaps = 10/274 (3%)

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVASVLPACGD 311
           + MF K+ +++ +SW  +IA Y N S   EA+ L+  M V  G++ +   ++  L ACG 
Sbjct: 110 RYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACGL 169

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
              +  G  +H +  +  L  ++ + +AL+DMY K G + +   VF +M  ++VVSWT++
Sbjct: 170 GVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAI 229

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           I+    +G   +A+  FS+M +S +  DS  F   L A + + LL  G+    I T+  K
Sbjct: 230 IAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGK---AIHTQTIK 286

Query: 432 LVPRIEHFA--CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
                  F    L  +  + GK +    L ++M M P+   W +L+         +  + 
Sbjct: 287 QGFDESSFVINTLATMYNKCGKADYVMRLFEKMKM-PDVVSWTTLITTYVQKGEEEHAVE 345

Query: 490 AADHI--FHLAPNQSGYYVLLSNIYAKA-GRWGD 520
           A   +   +++PN+  +  ++S     A  +WG+
Sbjct: 346 AFKRMRKSNVSPNKYTFAAVISACANLAIAKWGE 379



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 24/188 (12%)

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS-GL 396
           N+ +    K G L ++R +FD+M  +D +SWT++I+ Y  +   Y+A+ LFS M +  GL
Sbjct: 94  NSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGL 153

Query: 397 CPDSIAFVSVLSACSHAGL-----LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
             D       L AC   GL       E  + F + +    L+  +   + L+D+  + GK
Sbjct: 154 QRDQFMISVALKAC---GLGVNICFGELLHGFSVKS---GLINSVFVSSALIDMYMKVGK 207

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVA----------ACCLYSNMDIGILAAD-HIFHLAPN 500
           +E+   + K+M  + N   W +++A          A   +S M I  +  D H F +A  
Sbjct: 208 IEQGCRVFKKMT-KRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALK 266

Query: 501 QSGYYVLL 508
            S    LL
Sbjct: 267 ASADSSLL 274


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 172/497 (34%), Positives = 268/497 (53%), Gaps = 38/497 (7%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           +P I   L+  Y +C +++D R +FD++ + + V +N++I  Y  N  Y DAL ++++M 
Sbjct: 155 DPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMR 214

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
                PD      VL AC  + +L  G  IH  V   G   +      L+ MY  CG + 
Sbjct: 215 SSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMD 274

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
            AR++ + + SK ++   +M++GYA+ G   +A                           
Sbjct: 275 LARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDA--------------------------- 307

Query: 243 NTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
                     + +F ++  ++LV W+ MI+ YA +  P EA+ L+ +M      P+ I++
Sbjct: 308 ----------RFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITM 357

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            SV+ AC  + AL     IH YV+R      L + NAL+DMYAKCG+L +AR VF+ M  
Sbjct: 358 LSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPR 417

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           ++V+SW+SMI+A+ M G    A+ LF +M    + P+ + F+ VL AC HAGL+EEG   
Sbjct: 418 KNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKL 477

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           F  M  ++ + P  EH+ C+VDL  RA  + +A +LI+ MP  PN  IWGSL++AC ++ 
Sbjct: 478 FSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHG 537

Query: 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-V 541
             ++G  AA  +  L P+  G  V+LSNIYAK  RW DV  +RK M+ KGI K   +S +
Sbjct: 538 EAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRI 597

Query: 542 EMNDQVQIIALPLRSSK 558
           E+N+QV +  +  R  K
Sbjct: 598 EINNQVHMFMMADRYHK 614



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 150/325 (46%), Gaps = 35/325 (10%)

Query: 195 DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKE 254
           D  ++ S++   ++   F+  L++      L    D      L+      S   ++  + 
Sbjct: 120 DRFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLI--AMYASCRRIMDARL 177

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F K+ + + V+WN++I  Y  N    +A+ L+  M    ++P+++ + +VL ACG    
Sbjct: 178 LFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGN 237

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL------------------------ 350
           L  GR IH +V+      +  L+ AL++MYA CG++                        
Sbjct: 238 LSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSG 297

Query: 351 -------TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
                   +AR +FDQM  +D+V W++MIS Y  S Q  +A+ LF +ML     PD I  
Sbjct: 298 YAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITM 357

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           +SV+SACSH G L +   +     ++      +     L+D+  + G + +A ++ + MP
Sbjct: 358 LSVISACSHVGALAQAN-WIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMP 416

Query: 464 MEPNERIWGSLVAACCLYSNMDIGI 488
              N   W S++ A  ++ N D  I
Sbjct: 417 -RKNVISWSSMINAFAMHGNADSAI 440


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  314 bits (804), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 170/498 (34%), Positives = 270/498 (54%), Gaps = 37/498 (7%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++ LK++HAQII + +     S    L         +   + +F  + N     +N LIR
Sbjct: 80  LRHLKQVHAQIITHHNSPFQLSALASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIR 139

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           +  ++    +AL +Y  M   G  PD  TYP V+KAC+ S+    GL +H  VVK G + 
Sbjct: 140 ALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFEC 199

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           + +  + L+ +Y     L  A+++ N   ++DVV+WN+M+ GY ++     A        
Sbjct: 200 DSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHA-------- 251

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
                                        + +F ++  ++++SWN MI  YA    P EA
Sbjct: 252 -----------------------------RMVFDRMVCRDVISWNTMINGYAICGKPNEA 282

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
           + L+ QM   G++P   +V S+L AC  L AL  G  +H Y+   +++ N  +  ALVDM
Sbjct: 283 LALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDM 342

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
           YAKCG ++ A  VF+ M  +DV++W ++I+   + G   +A  LF +M  +G+ P+ I F
Sbjct: 343 YAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITF 402

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           V++LSACSHAG+++EG+     M+  Y + P++EH+ C++DLL RAG +EEA +LI  MP
Sbjct: 403 VAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMP 462

Query: 464 MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKR 523
           MEPN    G+L+  C ++ N ++G +    + +L P  SG Y+LLSNIYA A +W D ++
Sbjct: 463 MEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARK 522

Query: 524 VRKFMNSKGIKKMPGASV 541
           VR  M   GI K+PG SV
Sbjct: 523 VRNLMKVNGISKVPGVSV 540



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 143/306 (46%), Gaps = 13/306 (4%)

Query: 79  QMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLK 138
           +M   R VFD +  ++V+ +N +I  Y       +AL ++  M   G  P   T   +L 
Sbjct: 247 EMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLS 306

Query: 139 ACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVT 198
           AC+   +L  GL +H  +    ++ N   G  LV MY KCG +  A +V N M SKDV+ 
Sbjct: 307 ACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLA 366

Query: 199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT----SPENVLSVKE 254
           WN+++AG A +G   EA  + +EM+   ++P+  T  ++L + ++       + +L    
Sbjct: 367 WNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMS 426

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
               ++ K +  +  +I + A      EA++L   M    +EPN  ++ ++L  C     
Sbjct: 427 SSYGIEPK-VEHYGCVIDLLARAGFLEEAMELIGTMP---MEPNPSALGALLGGCRIHGN 482

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALV-DMYAKCGSLTEARTVFDQMRCQDV--VSWTSM 371
             LG  + + +    LQP       L+ ++YA      +AR V + M+   +  V   S+
Sbjct: 483 FELGEMVGKRL--INLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSV 540

Query: 372 ISAYGM 377
           I   GM
Sbjct: 541 IELKGM 546


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 171/483 (35%), Positives = 270/483 (55%), Gaps = 40/483 (8%)

Query: 67  GLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV-HG 125
           G  L+  Y +   + D R +FDE+ +++VV +  LI  Y    L  +A  V+  M V   
Sbjct: 169 GNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAES 228

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             P+  T      A      L +G  +H  +V+ G   ++   N LV M+GKCGC+  A+
Sbjct: 229 VWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAK 288

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            V + MP KDV +W SMV+ YA+ G  + A                              
Sbjct: 289 EVFDGMPIKDVYSWTSMVSAYAKCGDLENA------------------------------ 318

Query: 246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                   ++F ++ N+N+VSW+ M+A Y++ +MP EA+ ++  M   G+EP   ++ SV
Sbjct: 319 -------AKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSV 371

Query: 306 LPACGDLSALLLGRKIH-RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           L AC  L +L +G  ++  Y+   K++    L NA +DM+AKCG +  A  +F  M  ++
Sbjct: 372 LSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKN 431

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
           VVSW +MI A+G+ GQ  +A+ LF +   +G+ PD   ++ VLSACSH GL+ EGR +FK
Sbjct: 432 VVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFK 491

Query: 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNM 484
            M   Y + PR EH+AC++DLLG+ G ++EA+++ + MP+  +E  WG+L+ AC ++ N+
Sbjct: 492 EMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNV 551

Query: 485 DIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEM 543
           +IG  AAD +  L P+ SG YVL+S IYA   +WG VK +R  M  + +KK PG +S+E+
Sbjct: 552 EIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEV 611

Query: 544 NDQ 546
           + +
Sbjct: 612 DGK 614



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 18/195 (9%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           L+   I++  +   P++    +  +  CG +     +F  + +KNVV +N +I ++  + 
Sbjct: 387 LYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHG 446

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV--GLDYNLFN 167
              +ALH+++    +G  PD  TY  VL ACS    L+   + H   +K+  G++    +
Sbjct: 447 QPEEALHLFQEFKGNGILPDEATYIGVLSACS-HGGLVSEGRCHFKEMKIVYGIEPRAEH 505

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
              ++ + GK G L+EA  V   MP   D   W ++             L+ CR   ++ 
Sbjct: 506 YACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGAL-------------LNACRMHGNVE 552

Query: 227 I-KPDADTMASLLPS 240
           I K  AD +A L PS
Sbjct: 553 IGKCAADKLAGLDPS 567


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 174/563 (30%), Positives = 309/563 (54%), Gaps = 42/563 (7%)

Query: 24  TQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT 83
           T  TLLSG   +++ ++   ++T        II     S   +G  L+ +Y    ++   
Sbjct: 151 TFVTLLSGCNGHEMGNQITQVQTQ-------IIKLGYDSRLIVGNTLVDSYCKSNRLDLA 203

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
             +F E+   + V +N +I  Y  + L   A++++  M   G  P  +T+  VL A  G 
Sbjct: 204 CQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGL 263

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
           + +++G QIH  V+K    +N+F  N L+  Y K   + +AR++ ++MP +D V++N ++
Sbjct: 264 DDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVII 323

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT---------SPENVLSVKE 254
           +GYA +G+   A D+ RE++           A++L   +NT           + +++  +
Sbjct: 324 SGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTAD 383

Query: 255 ------------------------MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
                                   +F  L +++ V W  MI+ Y       E + L+ +M
Sbjct: 384 SEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKM 443

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
               +  +  + AS+L A   +++L LG+++H ++ +     N+   +AL+D+YAKCGS+
Sbjct: 444 RQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSI 503

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
            +A   F +M  +++VSW +MISAY  +G+    +  F +M++SGL PDS++F+ VLSAC
Sbjct: 504 KDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSAC 563

Query: 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI 470
           SH+GL+EEG ++F  MT+ YKL PR EH+A +VD+L R+G+  EA  L+ +MP++P+E +
Sbjct: 564 SHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIM 623

Query: 471 WGSLVAACCLYSNMDIGILAADHIFHLAP-NQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529
           W S++ AC ++ N ++   AAD +F++     +  YV +SNIYA AG+W +V +V K M 
Sbjct: 624 WSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMR 683

Query: 530 SKGIKKMPGAS-VEMNDQVQIIA 551
            +G+KK+P  S VE+  +  + +
Sbjct: 684 DRGVKKLPAYSWVEIKHETHMFS 706



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 113/460 (24%), Positives = 217/460 (47%), Gaps = 35/460 (7%)

Query: 51  HAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYL 110
            A+ +  +  H N      ++  Y   G + + R +FD +  +  V + +LI  Y     
Sbjct: 70  QARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQ 129

Query: 111 YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG 170
           + +A  ++  M   G +PD  T+  +L  C+G        Q+   ++K+G D  L  GN 
Sbjct: 130 FKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNT 189

Query: 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
           LV  Y K   L  A ++  +MP  D V++N+M+ GY+++G  ++A+++  EM++  +KP 
Sbjct: 190 LVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPT 249

Query: 231 ADTMASLLPS---------------------------VTN------TSPENVLSVKEMFL 257
             T A++L +                           V+N      +  ++V+  +++F 
Sbjct: 250 EFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFD 309

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
           ++  ++ VS+NV+I+ YA +     A DL+ +++    +      A++L    +     +
Sbjct: 310 EMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEM 369

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           GR+IH           + + N+LVDMYAKCG   EA  +F  +  +  V WT+MISAY  
Sbjct: 370 GRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQ 429

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
            G   + + LF+KM  + +  D   F S+L A +    L  G+     + +    +  + 
Sbjct: 430 KGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKS-GFMSNVF 488

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             + L+D+  + G +++A    ++MP + N   W ++++A
Sbjct: 489 SGSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISA 527



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 165/370 (44%), Gaps = 69/370 (18%)

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG- 210
           I   +VK G D +    N  V  + K G L +AR++   MP K+ V+ N M++GY ++G 
Sbjct: 39  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 98

Query: 211 ------------------------------RFDEALDVCREMESLRIKPDADTMASLLPS 240
                                         +F EA ++  +M+    +PD  T  +LL  
Sbjct: 99  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG 158

Query: 241 ---------------------------VTNT-----SPENVLSVK-EMFLKLDNKNLVSW 267
                                      V NT        N L +  ++F ++   + VS+
Sbjct: 159 CNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSY 218

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
           N MI  Y+ + +  +AV+L+++M+  G++P   + A+VL A   L  ++LG++IH +V +
Sbjct: 219 NAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIK 278

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
                N+ + NAL+D Y+K  S+ +AR +FD+M  QD VS+  +IS Y   G+   A  L
Sbjct: 279 TNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDL 338

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA--CLVDL 445
           F ++  +        F ++LS  S+    E GR   +I  +        E      LVD+
Sbjct: 339 FRELQFTAFDRKQFPFATMLSIASNTLDWEMGR---QIHAQTIVTTADSEILVGNSLVDM 395

Query: 446 LGRAGKVEEA 455
             + GK EEA
Sbjct: 396 YAKCGKFEEA 405


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 172/544 (31%), Positives = 303/544 (55%), Gaps = 36/544 (6%)

Query: 43  DIKTLKKLHAQIII-NQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           ++K  K +HA +II NQ    N      L+  Y  C Q++  R +FD +  +NVV +  L
Sbjct: 40  NLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGAL 99

Query: 102 IRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           +  Y +N L  + L ++K M SV    P+ Y +  ++ +CS S  ++ G Q H   +K G
Sbjct: 100 MAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSG 159

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV-- 218
           L ++ +  N L+ MY +   +K A  V  ++P  DV ++N ++ G  +NG   EAL+V  
Sbjct: 160 LVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLD 219

Query: 219 --------------------CREMESLRI---------KPDADTMASLLPSVTNTSPE-- 247
                               C  ++ LR+         +  A+  + +  ++ +   +  
Sbjct: 220 RMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCG 279

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
           N+L+ +++F +L  KN+VSW  ++A Y+ N    EA++ + +MEV G+ PN  + A +L 
Sbjct: 280 NILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLN 339

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           +C  +SAL  G+ +H  +++   + ++ + NAL++MY+K GS+  A  VF +M C+D ++
Sbjct: 340 SCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSIT 399

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W++MI      G G +A+ +F +ML +  CP  + FV VLSAC+H G ++EG YY   + 
Sbjct: 400 WSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLM 459

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
           +Q  + P +EH+ C+V LL +AG+++EA + +K  P++ +   W +L++AC ++ N  +G
Sbjct: 460 KQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLG 519

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
              A+ +  + P   G Y+LLSN+YAKA RW  V ++RK M  + +KK PGAS +E+ + 
Sbjct: 520 KKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNS 579

Query: 547 VQII 550
           + + 
Sbjct: 580 IHVF 583



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/448 (22%), Positives = 210/448 (46%), Gaps = 56/448 (12%)

Query: 136 VLKACSGSNSLLVGLQIHCSVV--KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
           +LK  + + +L  G  IH  ++        N+   N L+ +Y KC  +  AR + + M  
Sbjct: 31  LLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRK 90

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLR-IKPDADTMASLLPSVTNTSP------ 246
           ++VV+W +++AGY  NG   E L + + M S+  ++P+    A+++ S +++        
Sbjct: 91  RNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQ 150

Query: 247 ---------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSM 279
                                       +V     ++ ++   ++ S+N++I     N  
Sbjct: 151 CHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGY 210

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
           P+EA+++  +M    I  + ++  +    C  L  L LG ++H  + R   + +  + +A
Sbjct: 211 PSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSA 270

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           ++DMY KCG++  AR VF++++ ++VVSWT++++AY  +G   +A+  F +M + GL P+
Sbjct: 271 IIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPN 330

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA---CLVDLLGRAGKVEEAY 456
              F  +L++C+    L  G    K++  + K     +H      L+++  ++G +E A+
Sbjct: 331 EYTFAVLLNSCAGISALGHG----KLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAH 386

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH--LAPNQSGYYVLLSNIYAK 514
            +  +M    +   W +++   C  S+  +G   A  +F   LA  +  +YV    + + 
Sbjct: 387 KVFLEMICR-DSITWSAMI---CGLSHHGLG-REALVVFQEMLAAKECPHYVTFVGVLSA 441

Query: 515 AGRWGDVKR----VRKFMNSKGIKKMPG 538
               G V+     + + M   GI+  PG
Sbjct: 442 CAHLGSVQEGFYYLNQLMKQTGIE--PG 467


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 174/513 (33%), Positives = 283/513 (55%), Gaps = 34/513 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  C  +      F     +N+V +NV++ +Y       D+  +++ M + G  P+
Sbjct: 403 LLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPN 462

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +TYP +L+ C+   +L +G QIH  V+K G   N++  + L+ MY K G L  A R+L 
Sbjct: 463 QFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILR 522

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT------- 242
            +P  DVV+W +M+AGY Q+  F EAL +  EME   I+ D    AS + +         
Sbjct: 523 RLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQ 582

Query: 243 ---------------NTSPENVL--------SVKEMFL---KLDNKNLVSWNVMIAVYAN 276
                          + S  N L         ++E +L   K+ +KN +SWN +++  A 
Sbjct: 583 GQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQ 642

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           +    EA+ ++++M     E N  +  S + A   L+ +  G++IH  V +        +
Sbjct: 643 SGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREV 702

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            N+L+ +YAK GS+++A   F+ M  ++V+SW +MI+ Y   G G +A+ LF +M + G+
Sbjct: 703 SNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGI 762

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P+ + FV VLSACSH GL++EG  YF+ M + + LVP+ EH+ C+VDLLGRAG+++ A 
Sbjct: 763 MPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAM 822

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           + IK+MP+  +  IW +L++AC ++ N++IG  AA H+  L P  S  YVL+SNIYA + 
Sbjct: 823 EYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSR 882

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           +W      RK M  +G+KK PG S +E+ + V 
Sbjct: 883 QWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVH 915



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 131/451 (29%), Positives = 220/451 (48%), Gaps = 39/451 (8%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S+P +   L+  Y   G +   + VF+ I  K++V +  +I     N L  +A+ ++ +M
Sbjct: 193 SSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDM 252

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
                 P  Y    VL A +      +G Q+HC V+K G     +  NGLVA+Y +   L
Sbjct: 253 HASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKL 312

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
             A R+ + M S+D V++NS+++G  Q G  D AL++  +M+   +KPD  T+ASLL + 
Sbjct: 313 ISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSAC 372

Query: 242 TNTSP---------------------------------ENVLSVKEMFLKLDNKNLVSWN 268
            +                                     +V +  + FL  + +N+V WN
Sbjct: 373 ASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWN 432

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
           VM+  Y      +++ +++ QM++ G+ PN  +  S+L  C  L AL LG +IH +V + 
Sbjct: 433 VMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKT 492

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
             Q N+ + + L+DMYAK G L  A  +  ++   DVVSWT+MI+ Y       +A+ LF
Sbjct: 493 GFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLF 552

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK--LVPRIEHFACLVDLL 446
            +M   G+  D+I F S +SAC+    L +G+   +I  + Y       +     L+ L 
Sbjct: 553 EEMEYRGIQFDNIGFASAISACAGIRALRQGQ---QIHAQSYAAGFGADLSINNALISLY 609

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            R G+++EAY   +++  + N   W SLV+ 
Sbjct: 610 ARCGRIQEAYLAFEKIG-DKNNISWNSLVSG 639



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 213/428 (49%), Gaps = 40/428 (9%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VFDE +N++V  +N +I  +V     +    +++ M   G  P+ YT+  VLKAC G + 
Sbjct: 115 VFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDI 174

Query: 146 LLVGL-QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
               + Q+H      G D +    N L+ +Y K G ++ A++V N +  KD+VTW +M++
Sbjct: 175 AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMIS 234

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN--------------------- 243
           G +QNG  +EA+ +  +M +  I P    ++S+L + T                      
Sbjct: 235 GLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHS 294

Query: 244 ------------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
                       +    ++S + +F  +++++ VS+N +I+          A++L+ +M+
Sbjct: 295 ETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQ 354

Query: 292 VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351
              ++P+ I+VAS+L AC  + AL  G ++H +  +  +  ++ LE +L+D+Y+KC  + 
Sbjct: 355 RDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVE 414

Query: 352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
            A   F     +++V W  M+ AYG      D+  +F +M M G+ P+   + S+L  C+
Sbjct: 415 TAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCT 474

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFAC--LVDLLGRAGKVEEAYDLIKQMPMEPNER 469
             G L  G    +I T   K   ++  + C  L+D+  + G++  A  +++++P E +  
Sbjct: 475 SLGALYLGE---QIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVV 530

Query: 470 IWGSLVAA 477
            W +++A 
Sbjct: 531 SWTAMIAG 538



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 115/476 (24%), Positives = 219/476 (46%), Gaps = 39/476 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LH  ++I    HS   +   L+  Y    +++    +F  + +++ V +N LI   V 
Sbjct: 281 EQLHC-LVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQ 339

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                 AL ++  M      PDC T   +L AC+   +L  G+Q+H   +K G+  ++  
Sbjct: 340 QGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIIL 399

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L+ +Y KC  ++ A +      ++++V WN M+  Y Q     ++ ++ R+M+   +
Sbjct: 400 EGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGM 459

Query: 228 KPDADTMASLLPSVTNTSP----ENVLS--VKEMF------------------------- 256
            P+  T  S+L + T+       E + +  +K  F                         
Sbjct: 460 IPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALR 519

Query: 257 --LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
              +L   ++VSW  MIA Y  + M +EA+ L+ +ME  GI+ + I  AS + AC  + A
Sbjct: 520 ILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRA 579

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           L  G++IH          +L + NAL+ +YA+CG + EA   F+++  ++ +SW S++S 
Sbjct: 580 LRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSG 639

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
              SG   +A+ +F +ML +    +   + S +SA +    +++G+    ++ +      
Sbjct: 640 LAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSE 699

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
           R E    L+ L  ++G + +A+     M  E N   W +++     YS    G+ A
Sbjct: 700 R-EVSNSLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITG---YSQHGCGMEA 750



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 117/473 (24%), Positives = 200/473 (42%), Gaps = 84/473 (17%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M   G   +   Y  +L+ C  S SL   +++HC + K G D      + LV  Y + G 
Sbjct: 49  MEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGD 108

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGY-AQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
              A +V ++  ++ V +WN M+  + AQ   F +   + R M +  I P+  T A +L 
Sbjct: 109 QHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNF-QVFCLFRRMLAEGITPNGYTFAGVLK 167

Query: 240 SVT---------------------NTSP--ENVL-----------SVKEMFLKLDNKNLV 265
           +                       ++SP   N+L           S K++F  +  K++V
Sbjct: 168 ACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIV 227

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           +W  MI+  + N +  EA+ L+  M    I P    ++SVL A   +    LG ++H  V
Sbjct: 228 TWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLV 287

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD-- 383
            +        + N LV +Y++   L  A  +F  M  +D VS+ S+IS  G+  QG+   
Sbjct: 288 IKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLIS--GLVQQGFSDR 345

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG------------------------ 419
           A+ LF+KM    L PD I   S+LSAC+  G L +G                        
Sbjct: 346 ALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLD 405

Query: 420 ----------RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME---P 466
                      + F + TE   +V     +  ++   G+   + +++++ +QM ME   P
Sbjct: 406 LYSKCADVETAHKFFLTTETENIVL----WNVMLVAYGQLDNLSDSFEIFRQMQMEGMIP 461

Query: 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV--LLSNIYAKAGR 517
           N+  + S++  C     + +G     H+      Q   YV  +L ++YAK G+
Sbjct: 462 NQFTYPSILRTCTSLGALYLGEQIHTHVIKTGF-QLNVYVCSVLIDMYAKYGQ 513



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 106/200 (53%), Gaps = 1/200 (0%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++  +++HAQ        ++ SI   L+  Y  CG++ +    F++I +KN + +N L+ 
Sbjct: 580 LRQGQQIHAQSYA-AGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVS 638

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
               +  + +AL V+  M     + + +TY   + A +   ++  G QIH  V+K G D 
Sbjct: 639 GLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDS 698

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
                N L+++Y K G + +A R  NDM  ++V++WN+M+ GY+Q+G   EAL +  EM+
Sbjct: 699 EREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMK 758

Query: 224 SLRIKPDADTMASLLPSVTN 243
              I P+  T   +L + ++
Sbjct: 759 VCGIMPNHVTFVGVLSACSH 778


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 202/635 (31%), Positives = 319/635 (50%), Gaps = 107/635 (16%)

Query: 2   KAVVLLCRHF-STTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHL 60
           +A+ + CR   + TKP      +  Y L    AC ++    P  ++    H  I  N   
Sbjct: 132 RAIGVSCRMLRAGTKPDH---FTLPYAL---KACGEL----PSYRSGSAFHGLICCNG-F 180

Query: 61  HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK---NVVFFNVLIRSYVNNYLYYDALHV 117
            SN  +   L+  Y   G + D   VFDEIT K   +V+ +N ++ ++V       AL +
Sbjct: 181 ESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDL 240

Query: 118 YKNMS--VH----GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGL 171
           +  M+  VH        D  +   +L AC+   +L    +IH   ++ G   + F  N L
Sbjct: 241 FSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNAL 300

Query: 172 VAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF------------------- 212
           +  Y KCG +K+A  V N M  KDVV+WN+MV GY Q+G+F                   
Sbjct: 301 IDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDV 360

Query: 213 ----------------DEALDVCREMESLRIKPDADTMASLLPS------VTNTSPENVL 250
                            EALD  ++M     +P++ T+ SLL +      ++     +  
Sbjct: 361 ITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAY 420

Query: 251 SVKEMFLKLD-----------------------------------------NKNLVSWNV 269
           S+K+  L LD                                          +N+V+W V
Sbjct: 421 SLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTV 480

Query: 270 MIAVYANNSMPAEAVDLYLQM--EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
           MI  YA      +A+ L+ +M  + + + PNA +++ +L AC  LS+L +G++IH YV R
Sbjct: 481 MIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTR 540

Query: 328 KKLQPN--LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
                +    + N L+DMY+KCG +  AR VFD M  ++ VSWTSM+S YGM G+G +A+
Sbjct: 541 HHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEAL 600

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
            +F KM  +G  PD I+F+ +L ACSH+G++++G  YF IM   Y ++   +H+AC++DL
Sbjct: 601 DIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDL 660

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           L R+G++++A+  I++MPMEP+  IW +L++AC ++SN+++   A + +  +     G Y
Sbjct: 661 LARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSY 720

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            L+SNIYA A RW DV R+R+ M   GIKK PG S
Sbjct: 721 TLISNIYATARRWKDVARIRQLMKKSGIKKRPGCS 755



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 150/554 (27%), Positives = 252/554 (45%), Gaps = 114/554 (20%)

Query: 37  ILDKYPDIKTLKKLHAQII------------------INQHLHSNP-SIGLKLMRTYGAC 77
           +L +   + T++++H +II                  +  H + +P S+G  ++ +Y AC
Sbjct: 37  LLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTGVVASYLAC 96

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G   D   V + +     V++N+L+R+++       A+ V   M   G  PD +T P  L
Sbjct: 97  GATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYAL 156

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK--- 194
           KAC    S   G   H  +   G + N+F  N LVAMY + G L++A  V +++  K   
Sbjct: 157 KACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGID 216

Query: 195 DVVTWNSMVAGYAQNGRFDEALDVCREMESL------RIKPDADTMASLLPSVTNTS--P 246
           DV++WNS+VA + +      ALD+  EM ++        + D  ++ ++LP+  +    P
Sbjct: 217 DVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALP 276

Query: 247 E--------------------NVL--------SVKE---MFLKLDNKNLVSWNVM----- 270
           +                    N L        S+K+   +F  ++ K++VSWN M     
Sbjct: 277 QTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYT 336

Query: 271 ------------------------------IAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                                         IA YA      EA+D + QM ++G EPN++
Sbjct: 337 QSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSV 396

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKL------------QPNLRLENALVDMYAKCG 348
           ++ S+L AC  L AL  G + H Y  +K L              +L + NAL+DMY+KC 
Sbjct: 397 TIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCR 456

Query: 349 SLTEARTVFDQM--RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS--GLCPDSIAFV 404
           S   ART+F+ +  R ++VV+WT MI  Y   G   DA+ LFS+M+     + P++    
Sbjct: 457 SFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTIS 516

Query: 405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA-CLVDLLGRAGKVEEAYDLIKQMP 463
            +L AC+H   L  G+     +T  ++    +   A CL+D+  + G V+ A ++   MP
Sbjct: 517 CILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMP 576

Query: 464 MEPNERIWGSLVAA 477
            + NE  W S+++ 
Sbjct: 577 -KRNEVSWTSMMSG 589


>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
 gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 162/483 (33%), Positives = 273/483 (56%), Gaps = 29/483 (6%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD-PDCYTYPCVLKACSGSN 144
           +F+ + N +   +N+L++ +  N  + D   ++  M    +   D YTYP ++K CS   
Sbjct: 60  IFNRLLNPSTFLYNILLKIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLIKVCSNEL 119

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
            L  G  +H S ++ G+  +++ G+ L++ YGKC  +  AR+V +++P ++VV+W +MVA
Sbjct: 120 RLKEGEIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVA 179

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS----------PENVLS--- 251
           GYA  G  + A  V   M   R  P  + M S L    + S            NV+S   
Sbjct: 180 GYASVGDLENAKRVFERMPE-RNLPSWNAMISGLGKAGDLSGARKVFDEMVERNVVSFTV 238

Query: 252 -------------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                         + +F +   K++V+W+ +I+ Y+ N  P EAV ++ +M    ++P+
Sbjct: 239 MIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPD 298

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQP-NLRLENALVDMYAKCGSLTEARTVF 357
              + S++ AC  L    L + +  Y+ +  +      +  AL+DM+AKCG++ +A  +F
Sbjct: 299 EFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLF 358

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
             M  +D++   S+I    + G+G +AV LF++ML  GL PD++AF  +L+ACS  GL+E
Sbjct: 359 QDMPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGLIE 418

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           +G ++F  M  +Y +VP   H+AC+VDLL RAG++  AYDL+K MP++P+   WG+L+ A
Sbjct: 419 DGWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGA 478

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
           C L+ ++++    A+ +  L P ++G YVLLSNIYA A +W DV  VR  M  +GI+K+P
Sbjct: 479 CKLHGDVELREEVANRLLELEPEKAGSYVLLSNIYASANQWLDVSIVRDEMKERGIRKIP 538

Query: 538 GAS 540
           G S
Sbjct: 539 GCS 541



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 131/307 (42%), Gaps = 30/307 (9%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y   G M   R +FDE   K+VV ++ LI  Y  N    +A+ ++  M      PD
Sbjct: 239 MIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPD 298

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG-NGLVAMYGKCGCLKEARRVL 188
            +    ++ ACS   +  +   +   + +  +D    +    L+ M+ KCG +++A ++ 
Sbjct: 299 EFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLF 358

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
            DMPS+D++   S++ G + +GR  EA+++   M    + PD      +L + +      
Sbjct: 359 QDMPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGL-- 416

Query: 249 VLSVKEMFLKLDNKNLV-----SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
           +      F  + NK  V      +  M+ + +       A DL   M    ++P+A +  
Sbjct: 417 IEDGWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMP---LKPHACAWG 473

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA---------LVDMYAKCGSLTEAR 354
           ++L AC          K+H  VE ++   N  LE           L ++YA      +  
Sbjct: 474 ALLGAC----------KLHGDVELREEVANRLLELEPEKAGSYVLLSNIYASANQWLDVS 523

Query: 355 TVFDQMR 361
            V D+M+
Sbjct: 524 IVRDEMK 530


>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
 gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
          Length = 611

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 195/581 (33%), Positives = 297/581 (51%), Gaps = 63/581 (10%)

Query: 35  NDILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH------ 85
           N IL   P  KTL   K  HA I     L +  +I  K++         VD+        
Sbjct: 5   NTILSLLPKCKTLLQFKTSHALI-----LTTPTTINTKIIPLSKLIDFCVDSHFDEYFNY 59

Query: 86  ---VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
              +F +I + NV  FN +I+ Y  +     +LH+YK M  +G+ PD +T+P VLKACS 
Sbjct: 60  ANLLFRQIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSF 119

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
               + G  +H  ++K G + N++   GL+ MY +C  ++   +V + +P  +VV W  +
Sbjct: 120 IYDQVSGKCVHSCILKSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCL 179

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL------------------------ 238
           + GY  N +  EAL+V +EM    ++ +  TM + L                        
Sbjct: 180 INGYVINDQPREALEVFKEMGRWGVEANEVTMVNALIACARCRDVDTGRWVHERVCKAGY 239

Query: 239 -PSVTNTSPENVLSV---------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
            P V  ++   +L+                +E+F K+  +N+V+WN MI  Y       E
Sbjct: 240 DPFVFASNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNE 299

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A+ L+  M  +G  P+  +  SVL  C     L LG  +H Y+ +  +  ++ L  AL+D
Sbjct: 300 ALGLFFYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALATALLD 359

Query: 343 MYAKCGSLTEARTVFDQ-MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM-SGLCPDS 400
           MYAK G L  A+ +F+  +  +DVV WTSMI+A  + G G +A++LF  M   S L PD 
Sbjct: 360 MYAKNGELGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLFQIMQEDSSLVPDH 419

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           I ++ VL ACSH GL+EE +  F +MT+ Y ++P  EH++C+VDLL RAG   EA  L++
Sbjct: 420 ITYIGVLFACSHVGLVEEAQKQFNLMTKSYGILPEKEHYSCMVDLLSRAGHFREAEKLME 479

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD 520
            M + PN  IWG+L+  C ++ N+ +       +  L P QSG Y LLSNIYA +G+W +
Sbjct: 480 TMSIRPNIAIWGALLNGCQIHENIPVASQVKVRLAELEPIQSGIYALLSNIYANSGKWEE 539

Query: 521 VKRVRKFMNSKGIKKMPG-ASVEM---NDQVQIIALPLRSS 557
           V R RK M  K I K  G +SVEM   +D+ Q +     S+
Sbjct: 540 VNRTRKMMKHKRIAKTIGHSSVEMKVSSDETQFMCFHKSSA 580


>gi|357440905|ref|XP_003590730.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479778|gb|AES60981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 627

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 178/543 (32%), Positives = 293/543 (53%), Gaps = 49/543 (9%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +K  ++ H+QI+ N     N  +  +L+  Y   G  + ++ VFD +  KNV  +N LI 
Sbjct: 42  LKLTQQCHSQILTNC-FSQNAFLTTRLISAYATFGDSIMSKLVFDSVHTKNVYLWNSLIN 100

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            YV N+ + +A+ +++ M      PD YT   + K       L++G  IH   +++G   
Sbjct: 101 GYVKNHQFDNAIVLFRQMG-RCLLPDDYTLATISKVSGEIQDLVLGKLIHGKSLRIGFVS 159

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL-----DV 218
           ++  GN +++MY +C    +A +V ++MP ++V ++N +++G A  G  D +L     + 
Sbjct: 160 DIVVGNSVMSMYIRCREFGDAMKVFDEMPQRNVGSFNVIISGCAALGNLDYSLYADLWNF 219

Query: 219 CREMESLRIKPDADTMASLLPSVTNT---------------------------------- 244
            R M+      DA T+ASLLP   ++                                  
Sbjct: 220 FRRMQCQGYNADAFTVASLLPMCCDSDGKFDHGRELHCYLVKNGLDLKMCSDVHMGSSLI 279

Query: 245 -----SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPN 298
                S + VLS + +F ++ ++N+  W  MI  Y  N  P  A+ L+ +M+    I PN
Sbjct: 280 DMYSRSNKLVLS-RRVFDQMKSRNIYVWTAMINGYVQNGAPEGALILFREMQRKDRIRPN 338

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
            +S+ SVLPACG L  L+ G+++H +  + +    + L NAL+DMYAKCGSL  AR VFD
Sbjct: 339 RVSLVSVLPACGLLVGLMGGKQVHAFSIKMEFNDYISLRNALIDMYAKCGSLDYARRVFD 398

Query: 359 QMR-CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
                +D ++W+S+ISAYG+ G+G +A+  + +ML  G+ PD I  V VLSAC  +GL++
Sbjct: 399 NGSYSKDAITWSSIISAYGLHGKGQEALTTYYEMLQQGIKPDMITVVGVLSACCRSGLVD 458

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           EG   +  +T +Y++ P +E   C+VDLLGR+G++++A D I++MP+ P   +WGSL+ A
Sbjct: 459 EGISIYNSLTTEYEMKPSVEICGCVVDLLGRSGQLDQALDFIREMPIIPGPSVWGSLLTA 518

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
             ++ N     LA   +  L P     Y+ LSN YA + RW ++  VR  M  +G++K+P
Sbjct: 519 SVIHGNSMTRDLAYRCLLELEPENPSNYISLSNTYASSRRWDEITEVRSMMKERGLRKVP 578

Query: 538 GAS 540
           G S
Sbjct: 579 GIS 581



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 182/385 (47%), Gaps = 52/385 (13%)

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
           +SL +  Q H  ++      N F    L++ Y   G    ++ V + + +K+V  WNS++
Sbjct: 40  HSLKLTQQCHSQILTNCFSQNAFLTTRLISAYATFGDSIMSKLVFDSVHTKNVYLWNSLI 99

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL------------- 250
            GY +N +FD A+ + R+M    + PD  T+A+ +  V+    + VL             
Sbjct: 100 NGYVKNHQFDNAIVLFRQMGRCLL-PDDYTLAT-ISKVSGEIQDLVLGKLIHGKSLRIGF 157

Query: 251 --------SVKEMFLK-------------LDNKNLVSWNVMIAVYA-----NNSMPAEAV 284
                   SV  M+++             +  +N+ S+NV+I+  A     + S+ A+  
Sbjct: 158 VSDIVVGNSVMSMYIRCREFGDAMKVFDEMPQRNVGSFNVIISGCAALGNLDYSLYADLW 217

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALL-LGRKIHRYVERK----KLQPNLRLENA 339
           + + +M+  G   +A +VAS+LP C D       GR++H Y+ +     K+  ++ + ++
Sbjct: 218 NFFRRMQCQGYNADAFTVASLLPMCCDSDGKFDHGRELHCYLVKNGLDLKMCSDVHMGSS 277

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG-LCP 398
           L+DMY++   L  +R VFDQM+ +++  WT+MI+ Y  +G    A+ LF +M     + P
Sbjct: 278 LIDMYSRSNKLVLSRRVFDQMKSRNIYVWTAMINGYVQNGAPEGALILFREMQRKDRIRP 337

Query: 399 DSIAFVSVLSACSHAGLLEEGR--YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
           + ++ VSVL AC     L  G+  + F I  E       I     L+D+  + G ++ A 
Sbjct: 338 NRVSLVSVLPACGLLVGLMGGKQVHAFSIKME---FNDYISLRNALIDMYAKCGSLDYAR 394

Query: 457 DLIKQMPMEPNERIWGSLVAACCLY 481
            +        +   W S+++A  L+
Sbjct: 395 RVFDNGSYSKDAITWSSIISAYGLH 419



 Score = 45.1 bits (105), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 7/182 (3%)

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           DL +L L ++ H  +       N  L   L+  YA  G    ++ VFD +  ++V  W S
Sbjct: 38  DLHSLKLTQQCHSQILTNCFSQNAFLTTRLISAYATFGDSIMSKLVFDSVHTKNVYLWNS 97

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLC--PDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
           +I+ Y  + Q  +A+ LF +M   G C  PD     ++         L  G+      + 
Sbjct: 98  LINGYVKNHQFDNAIVLFRQM---GRCLLPDDYTLATISKVSGEIQDLVLGKLIHG-KSL 153

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
           +   V  I     ++ +  R  +  +A  +  +MP + N   +  +++ C    N+D  +
Sbjct: 154 RIGFVSDIVVGNSVMSMYIRCREFGDAMKVFDEMP-QRNVGSFNVIISGCAALGNLDYSL 212

Query: 489 LA 490
            A
Sbjct: 213 YA 214


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 164/472 (34%), Positives = 273/472 (57%), Gaps = 15/472 (3%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G+M + R +FD + +KNVV +N +I +YV +    +A+ ++K M       D  ++  ++
Sbjct: 249 GKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMP----HKDSVSWTTII 304

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
                   L    Q++  +    +       +GL+    + G + EA ++ + + + DVV
Sbjct: 305 NGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLI----QNGRIDEADQMFSRIGAHDVV 360

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
            WNSM+AGY+++GR DEAL++ R+M  ++     +TM S                 E+F 
Sbjct: 361 CWNSMIAGYSRSGRMDEALNLFRQM-PIKNSVSWNTMISGYAQAGQMD-----RATEIFQ 414

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
            +  KN+VSWN +IA +  N++  +A+   + M   G +P+  + A  L AC +L+AL +
Sbjct: 415 AMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQV 474

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           G ++H Y+ +     +L + NAL+ MYAKCG +  A  VF  + C D++SW S+IS Y +
Sbjct: 475 GNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISGYAL 534

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
           +G    A   F +M    + PD + F+ +LSACSHAGL  +G   FK M E + + P  E
Sbjct: 535 NGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLDIFKCMIEDFAIEPLAE 594

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHL 497
           H++CLVDLLGR G++EEA++ ++ M ++ N  +WGSL+ AC ++ N+++G  AA+ +F L
Sbjct: 595 HYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGSLLGACRVHKNLELGRFAAERLFEL 654

Query: 498 APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            P+ +  Y+ LSN++A+AGRW +V+RVR  M  K   K PG S +E+ +Q+Q
Sbjct: 655 EPHNASNYITLSNMHAEAGRWEEVERVRMLMRGKRAGKQPGCSWIEVQNQIQ 706



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 145/307 (47%), Gaps = 31/307 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y   GQM     +F  +  KN+V +N LI  ++ N LY DAL     M   G  PD
Sbjct: 396 MISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPD 455

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T+ C L AC+   +L VG Q+H  ++K G   +LF GN L+AMY KCG ++ A +V  
Sbjct: 456 QSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFR 515

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
           D+   D+++WNS+++GYA NG  ++A     +M S R+ PD  T   +L + ++      
Sbjct: 516 DIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAG---- 571

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE---AVDLYLQM--------EVHG--IE 296
                    L N+ L  +  MI  +A   +       VDL  ++         V G  ++
Sbjct: 572 ---------LANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVK 622

Query: 297 PNAISVASVLPACGDLSALLLGR-KIHRYVERKKLQP-NLRLENALVDMYAKCGSLTEAR 354
            NA    S+L AC     L LGR    R  E   L+P N      L +M+A+ G   E  
Sbjct: 623 ANAGLWGSLLGACRVHKNLELGRFAAERLFE---LEPHNASNYITLSNMHAEAGRWEEVE 679

Query: 355 TVFDQMR 361
            V   MR
Sbjct: 680 RVRMLMR 686



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/475 (24%), Positives = 223/475 (46%), Gaps = 73/475 (15%)

Query: 82  DTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACS 141
           D R +FD+++ +N+V +N +I  Y++N +  +A  ++  M     + D +++  ++  C 
Sbjct: 66  DARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMP----ERDNFSWALMI-TCY 120

Query: 142 GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNS 201
                L   +    +V   LD   +N   ++A Y K G   +A++V   MP+KD+V++NS
Sbjct: 121 TRKGKLEKARELLELVPDKLDTACWNA--MIAGYAKKGQFNDAKKVFEQMPAKDLVSYNS 178

Query: 202 MVAGYAQNGRFDEALDVCREMESLRI------------KPDADTMASLLPSVTNTSPENV 249
           M+AGY QNG+   AL     M    +              D  +   L   + N +  + 
Sbjct: 179 MLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSW 238

Query: 250 LSV-------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE 296
           +++             +E+F ++ +KN+VSWN MIA Y  +    EAV L+ +M      
Sbjct: 239 VTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMP----H 294

Query: 297 PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTV 356
            +++S  +++     +  L   R+++  +  K +     L + L+    + G + EA  +
Sbjct: 295 KDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLI----QNGRIDEADQM 350

Query: 357 FDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL 416
           F ++   DVV W SMI+ Y  SG+  +A+ LF +M +     +S+++ +++S  + AG +
Sbjct: 351 FSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPI----KNSVSWNTMISGYAQAGQM 406

Query: 417 EEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA--YDLIKQMPM------EPNE 468
           +     F+ M E+      I  +  L+     AG ++     D +K + M      +P++
Sbjct: 407 DRATEIFQAMREK-----NIVSWNSLI-----AGFLQNNLYLDALKSLVMMGKEGKKPDQ 456

Query: 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY--VLLSN----IYAKAGR 517
             +   ++AC   + + +G    ++I      +SGY   + + N    +YAK GR
Sbjct: 457 STFACTLSACANLAALQVGNQLHEYIL-----KSGYMNDLFVGNALIAMYAKCGR 506



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 112/445 (25%), Positives = 201/445 (45%), Gaps = 99/445 (22%)

Query: 75  GACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYP 134
           G  G++ +   +F  +T+KN+V +N +I     N    DA  ++  MS            
Sbjct: 28  GKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMS------------ 75

Query: 135 CVLKACSGSNSLLVGLQIHCSVVK-------VGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
             L+     N+++ G  +H ++V+       V  + + F+   ++  Y + G L++AR +
Sbjct: 76  --LRNLVSWNTMIAGY-LHNNMVEEASELFDVMPERDNFSWALMITCYTRKGKLEKAREL 132

Query: 188 LNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP 246
           L  +P K D   WN+M+AGYA+ G+F++A  V  +M +     D  +  S+L   T    
Sbjct: 133 LELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPA----KDLVSYNSMLAGYTQNGK 188

Query: 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
            ++    + F  +  +N+VSWN+M+A Y  +   + A  L+ ++      PNA+S  ++L
Sbjct: 189 MHL--ALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIP----NPNAVSWVTML 242

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
             CG                                  AK G + EAR +FD+M  ++VV
Sbjct: 243 --CG---------------------------------LAKYGKMAEARELFDRMPSKNVV 267

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF--- 423
           SW +MI+ Y    Q  +AV LF KM       DS+++ ++++     G L+E R  +   
Sbjct: 268 SWNAMIATYVQDLQVDEAVKLFKKMPH----KDSVSWTTIINGYIRVGKLDEARQVYNQM 323

Query: 424 --KIMTEQYKLVP------RIEHFACLVDLLG---------------RAGKVEEAYDLIK 460
             K +T Q  L+       RI+    +   +G               R+G+++EA +L +
Sbjct: 324 PCKDITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFR 383

Query: 461 QMPMEPNERIWGSLVAACCLYSNMD 485
           QMP++ N   W ++++       MD
Sbjct: 384 QMPIK-NSVSWNTMISGYAQAGQMD 407



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 166/381 (43%), Gaps = 83/381 (21%)

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           FN N  +   GK G ++EA R+  +M  K++VT+NSM++  A+N R  +A          
Sbjct: 18  FNHNRQIIQLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDA---------- 67

Query: 226 RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285
                                      +++F ++  +NLVSWN MIA Y +N+M  EA +
Sbjct: 68  ---------------------------RQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASE 100

Query: 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL--------- 336
           L+                 V+P   + S  L+   I  Y  + KL+    L         
Sbjct: 101 LF----------------DVMPERDNFSWALM---ITCYTRKGKLEKARELLELVPDKLD 141

Query: 337 ---ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
               NA++  YAK G   +A+ VF+QM  +D+VS+ SM++ Y  +G+ + A+  F  M  
Sbjct: 142 TACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTE 201

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
             +    +++  +++    +G L      F+ +       P    +  ++  L + GK+ 
Sbjct: 202 RNV----VSWNLMVAGYVKSGDLSSAWQLFEKIPN-----PNAVSWVTMLCGLAKYGKMA 252

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ-SGYYVLLSNIY 512
           EA +L  +MP   N   W +++A        D+ +  A  +F   P++ S  +  + N Y
Sbjct: 253 EARELFDRMP-SKNVVSWNAMIATYV----QDLQVDEAVKLFKKMPHKDSVSWTTIINGY 307

Query: 513 AKAGRWGDVKRVRKFMNSKGI 533
            + G+  + ++V   M  K I
Sbjct: 308 IRVGKLDEARQVYNQMPCKDI 328


>gi|357481301|ref|XP_003610936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512271|gb|AES93894.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 812

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 181/563 (32%), Positives = 296/563 (52%), Gaps = 72/563 (12%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++HA II +  +H NP +  KL+  Y +   + D + V +   + + + +N++I  YV 
Sbjct: 112 KQIHAHII-SLGIHQNPILVSKLINFYASVDLLADAQIVAECSNSFDPLHWNMVISLYVK 170

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N L+ DA+ VY+ M   G  PD YTYP VLKAC        G+ +H ++ +  + ++LF 
Sbjct: 171 NCLFEDAISVYRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVAVHKAIQESSIKWSLFV 230

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKD-------------------------------- 195
            N LV MYG+ G L+ AR + + MP++D                                
Sbjct: 231 HNALVFMYGRFGKLEVARELFDIMPARDDVSWNTMISCYASRGLWDEAFRLFGCMREAGI 290

Query: 196 ---VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA----------------- 235
              ++ WN++  G    G F  AL +  +M ++ I+ D+  M                  
Sbjct: 291 ERNIIIWNTIAGGCLHTGNFKGALKLFSQMRAV-IQLDSVAMVVGLNACSHIGAVKLGKE 349

Query: 236 ----------SLLPSVTNTSPENVLSVKEM------FLKLDNKNLVSWNVMIAVYANNSM 279
                      +  +V NT        +++      F K+D K L++WN M++ +A+   
Sbjct: 350 IHGHAVRTCFDVFDNVKNTLITMYSRCRDLNHAYLLFRKIDEKGLITWNAMLSGFAHMDR 409

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN--LRLE 337
             E   L  +M   G+EPN +++AS+LP C  ++ L  G++ H Y+ +++ Q    L L 
Sbjct: 410 SEEVSFLLREMLREGVEPNYVTIASILPLCARIANLQHGKEFHCYMVKREEQFKGYLLLW 469

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
           N+LV+MY++ G + EAR VFD +  +D V++TSMI  YG+SG G  A+ LF++M    + 
Sbjct: 470 NSLVEMYSRSGKVLEARKVFDSLSRKDEVTYTSMIMGYGVSGDGETALKLFAEMRRLNIK 529

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
           PD +  V+VL ACSH+GL+ +G+  F+ M E Y + PR+EH++C+VDL GRAG +++A +
Sbjct: 530 PDHVTMVAVLIACSHSGLVAQGQVLFRKMIEVYGIDPRVEHYSCMVDLFGRAGLLDKAKE 589

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
           +I  M  +P   IW +L+ AC ++ N  IG  AA  +  + P+ SGYY+L++N+YA A R
Sbjct: 590 VITGMSCKPTSAIWATLIGACKIHGNTVIGEWAAGKLLEMKPDHSGYYLLIANMYAAANR 649

Query: 518 WGDVKRVRKFMNSKGIKKMPGAS 540
                  R +M   G K+ PG +
Sbjct: 650 LDKEAEARTYMRDSGAKRTPGCA 672



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 170/390 (43%), Gaps = 72/390 (18%)

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
           +L  C+   SL  G QIH  ++ +G+  N    + L+  Y     L +A+ V     S D
Sbjct: 98  LLLGCTNLKSLSQGKQIHAHIISLGIHQNPILVSKLINFYASVDLLADAQIVAECSNSFD 157

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL----------------P 239
            + WN +++ Y +N  F++A+ V R M S  + PD  T  S+L                 
Sbjct: 158 PLHWNMVISLYVKNCLFEDAISVYRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVAVHK 217

Query: 240 SVTNTSPENVLSV-----------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
           ++  +S +  L V                 +E+F  +  ++ VSWN MI+ YA+  +  E
Sbjct: 218 AIQESSIKWSLFVHNALVFMYGRFGKLEVARELFDIMPARDDVSWNTMISCYASRGLWDE 277

Query: 283 AVDLYLQMEVHGIEPNAI--------------------------------SVASV--LPA 308
           A  L+  M   GIE N I                                SVA V  L A
Sbjct: 278 AFRLFGCMREAGIERNIIIWNTIAGGCLHTGNFKGALKLFSQMRAVIQLDSVAMVVGLNA 337

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C  + A+ LG++IH +  R        ++N L+ MY++C  L  A  +F ++  + +++W
Sbjct: 338 CSHIGAVKLGKEIHGHAVRTCFDVFDNVKNTLITMYSRCRDLNHAYLLFRKIDEKGLITW 397

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT- 427
            +M+S +    +  +   L  +ML  G+ P+ +   S+L  C+    L+ G+ +   M  
Sbjct: 398 NAMLSGFAHMDRSEEVSFLLREMLREGVEPNYVTIASILPLCARIANLQHGKEFHCYMVK 457

Query: 428 --EQYKLVPRIEHFACLVDLLGRAGKVEEA 455
             EQ+K    +  +  LV++  R+GKV EA
Sbjct: 458 REEQFKGYLLL--WNSLVEMYSRSGKVLEA 485



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/418 (21%), Positives = 171/418 (40%), Gaps = 76/418 (18%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC ++LD    +   K +    I       N      L+  YG  G++   R +FD +  
Sbjct: 202 ACGELLDYDSGVAVHKAIQESSIKWSLFVHNA-----LVFMYGRFGKLEVARELFDIMPA 256

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCV---------------- 136
           ++ V +N +I  Y +  L+ +A  ++  M   G + +   +  +                
Sbjct: 257 RDDVSWNTMISCYASRGLWDEAFRLFGCMREAGIERNIIIWNTIAGGCLHTGNFKGALKL 316

Query: 137 ------------------LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC 178
                             L ACS   ++ +G +IH   V+   D      N L+ MY +C
Sbjct: 317 FSQMRAVIQLDSVAMVVGLNACSHIGAVKLGKEIHGHAVRTCFDVFDNVKNTLITMYSRC 376

Query: 179 GCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238
             L  A  +   +  K ++TWN+M++G+A   R +E   + REM    ++P+  T+AS+L
Sbjct: 377 RDLNHAYLLFRKIDEKGLITWNAMLSGFAHMDRSEEVSFLLREMLREGVEPNYVTIASIL 436

Query: 239 P---SVTN--------------------------------TSPENVLSVKEMFLKLDNKN 263
           P    + N                                +    VL  +++F  L  K+
Sbjct: 437 PLCARIANLQHGKEFHCYMVKREEQFKGYLLLWNSLVEMYSRSGKVLEARKVFDSLSRKD 496

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR 323
            V++  MI  Y  +     A+ L+ +M    I+P+ +++ +VL AC     +  G+ + R
Sbjct: 497 EVTYTSMIMGYGVSGDGETALKLFAEMRRLNIKPDHVTMVAVLIACSHSGLVAQGQVLFR 556

Query: 324 -YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTSMISAYGMSG 379
             +E   + P +   + +VD++ + G L +A+ V   M C+   + W ++I A  + G
Sbjct: 557 KMIEVYGIDPRVEHYSCMVDLFGRAGLLDKAKEVITGMSCKPTSAIWATLIGACKIHG 614



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 2/175 (1%)

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           +  +L  C +L +L  G++IH ++    +  N  L + L++ YA    L +A+ V +   
Sbjct: 95  IKHLLLGCTNLKSLSQGKQIHAHIISLGIHQNPILVSKLINFYASVDLLADAQIVAECSN 154

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
             D + W  +IS Y  +    DA++++ +ML  G+ PD   + SVL AC      + G  
Sbjct: 155 SFDPLHWNMVISLYVKNCLFEDAISVYRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVA 214

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
             K + E         H A LV + GR GK+E A +L   MP   ++  W ++++
Sbjct: 215 VHKAIQESSIKWSLFVHNA-LVFMYGRFGKLEVARELFDIMPAR-DDVSWNTMIS 267


>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Brachypodium distachyon]
          Length = 593

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 163/459 (35%), Positives = 261/459 (56%), Gaps = 43/459 (9%)

Query: 128 PDCYTYPCVLKACSGSNSLLV------GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
           PD YT P  LKAC+   +         G Q+H    K G    L   N LV +YG CG  
Sbjct: 105 PDGYTLPATLKACARLGAGGDDGGLREGRQVHAVAEKGGFLGRLPVRNALVTLYGVCGEC 164

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
            +ARRV ++M S+DVV+W ++V+ + + GRF EAL +  +M+   + P+  T+A +L + 
Sbjct: 165 GDARRVFDEMASRDVVSWTALVSAFVRGGRFAEALVLVGQMD---VVPNEGTLACVLVAC 221

Query: 242 TNTSP---------------------------------ENVLSVKEMFLKLDNKNLVSWN 268
                                                 E +   + +F +L  ++++SW 
Sbjct: 222 GRLGAARAGKAVHGWYLRRESDLKLIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWT 281

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
           +MI+      +P++A++++ +M+   ++P+ + +++VL AC  L AL  GR +H Y+ERK
Sbjct: 282 IMISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTSLGALESGRWVHEYIERK 341

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
            ++ ++ +  +LVDMYAKCG L  + ++F +M  +++ SW ++I+ + + G G +A+  F
Sbjct: 342 GIEWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNALINGFALHGHGREALEHF 401

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
            +M+ SGL P+ ++F+ VL AC H+GL++EG   F+ M   YKL P  EH+  +VDLLGR
Sbjct: 402 DRMVASGLAPNEVSFIIVLGACCHSGLVQEGLQLFESMKNSYKLSPWEEHYGSVVDLLGR 461

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508
           AG + EAY + K MPM P    WG+L++AC  +  +D       H+  L  ++SG Y LL
Sbjct: 462 AGLIHEAYSVTKAMPMRPAVFTWGALLSACQAHRQVDFSQQILRHVHELESSESGVYALL 521

Query: 509 SNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV-EMNDQ 546
           SNIYA   RW DVKRVR  M+ KG++K PG+SV E+N +
Sbjct: 522 SNIYAVNHRWADVKRVRGLMSEKGLQKEPGSSVIEVNGK 560



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 162/340 (47%), Gaps = 38/340 (11%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  YG CG+  D R VFDE+ +++VV +  L+ ++V    + +AL +   M V    P+
Sbjct: 154 LVTLYGVCGECGDARRVFDEMASRDVVSWTALVSAFVRGGRFAEALVLVGQMDV---VPN 210

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T  CVL AC    +   G  +H   ++   D  L  GN ++ MY KC  L  ARRV +
Sbjct: 211 EGTLACVLVACGRLGAARAGKAVHGWYLRRESDLKLIVGNAVLDMYVKCEKLDLARRVFD 270

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP-EN 248
            +  +DV++W  M++G  Q     +AL+V  EM+  R+KPD   ++++L + T+    E+
Sbjct: 271 RLLVRDVISWTIMISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTSLGALES 330

Query: 249 VLSVKE--------------------------------MFLKLDNKNLVSWNVMIAVYAN 276
              V E                                +F K+  KNL SWN +I  +A 
Sbjct: 331 GRWVHEYIERKGIEWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNALINGFAL 390

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLR 335
           +    EA++ + +M   G+ PN +S   VL AC     +  G ++   ++   KL P   
Sbjct: 391 HGHGREALEHFDRMVASGLAPNEVSFIIVLGACCHSGLVQEGLQLFESMKNSYKLSPWEE 450

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVV-SWTSMISA 374
              ++VD+  + G + EA +V   M  +  V +W +++SA
Sbjct: 451 HYGSVVDLLGRAGLIHEAYSVTKAMPMRPAVFTWGALLSA 490



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 86/165 (52%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  ++  Y  C ++   R VFD +  ++V+ + ++I   V   L   AL V+  M    
Sbjct: 248 VGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWTIMISGLVQCKLPSKALEVFNEMQKSR 307

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             PD      VL AC+   +L  G  +H  + + G+++++  G  LV MY KCGCL+ + 
Sbjct: 308 VKPDKVVLSTVLSACTSLGALESGRWVHEYIERKGIEWDVHVGTSLVDMYAKCGCLETSL 367

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
            +   MP K++ +WN+++ G+A +G   EAL+    M +  + P+
Sbjct: 368 SIFRKMPLKNLSSWNALINGFALHGHGREALEHFDRMVASGLAPN 412



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y  CG +  +  +F ++  KN+  +N LI  +  +    +AL  +  M   G
Sbjct: 349 VGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNALINGFALHGHGREALEHFDRMVASG 408

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF----NGNGLVAMYGKCGCL 181
             P+  ++  VL AC  S  +  GLQ+  S+      Y L     +   +V + G+ G +
Sbjct: 409 LAPNEVSFIIVLGACCHSGLVQEGLQLFESMKN---SYKLSPWEEHYGSVVDLLGRAGLI 465

Query: 182 KEARRVLNDMPSKDVV-TWNSMVAGYAQNGRFDEALDVCREMESL 225
            EA  V   MP +  V TW ++++    + + D +  + R +  L
Sbjct: 466 HEAYSVTKAMPMRPAVFTWGALLSACQAHRQVDFSQQILRHVHEL 510


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 177/524 (33%), Positives = 290/524 (55%), Gaps = 35/524 (6%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
           L S+  +   L+  Y  CG +V+ + +F  +++++VV +N +I       L  DA+ +  
Sbjct: 140 LESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIM 199

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M   G  P+  T   VL     + +L  G  +H   V+   D  +  G GL+ MY KC 
Sbjct: 200 QMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQ 259

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPDADTMASLL 238
           CL  AR++ + M  ++ V+W++M+ GY  +    EAL++  +M     + P   T+ S+L
Sbjct: 260 CLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVL 319

Query: 239 PS---VTNTSPENVL-----------------SVKEMFLK-------------LDNKNLV 265
            +   +T+ S    L                 ++  M+ K             ++ K+ V
Sbjct: 320 RACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSV 379

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           S++ +++    N   A A+ ++  M++ GI+P+  ++  VLPAC  L+AL  G   H Y+
Sbjct: 380 SFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYL 439

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
             +    +  + NAL+DMY+KCG ++ AR VF++M   D+VSW +MI  YG+ G G +A+
Sbjct: 440 IVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEAL 499

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
            LF  +L  GL PD I F+ +LS+CSH+GL+ EGR +F  M+  + +VPR+EH  C+VD+
Sbjct: 500 GLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDI 559

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           LGRAG ++EA+  I+ MP EP+ RIW +L++AC ++ N+++G   +  I  L P  +G +
Sbjct: 560 LGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNF 619

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           VLLSNIY+ AGRW D   +R      G+KK+PG S +E+N  V 
Sbjct: 620 VLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVH 663



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 144/453 (31%), Positives = 238/453 (52%), Gaps = 44/453 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           KK+H   + N   +++ S+  KL R Y +C Q+V  R +FDEI N +V+ +N +IR+Y  
Sbjct: 28  KKIHQHFLKNTS-NADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAW 86

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N  +  A+ +Y +M   G  P+ YTYP VLKACSG  ++  G++IH      GL+ ++F 
Sbjct: 87  NGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFV 146

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              LV  Y KCG L EA+R+ + M  +DVV WN+M+AG +  G  D+A+ +  +M+   I
Sbjct: 147 CTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGI 206

Query: 228 KPDADTMASLLPSVTNTSP---------------------------------ENVLSVKE 254
            P++ T+  +LP+V                                      + +L  ++
Sbjct: 207 CPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARK 266

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVASVLPACGDLS 313
           +F  +  +N VSW+ MI  Y  +    EA++L+ QM +   ++P  +++ SVL AC  L+
Sbjct: 267 IFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLT 326

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
            L  GRK+H Y+ +     ++ L N L+ MYAKCG + +A   FD M  +D VS+++++S
Sbjct: 327 DLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVS 386

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
               +G    A+++F  M +SG+ PD    + VL ACSH   L+ G       +  Y +V
Sbjct: 387 GCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG-----FCSHGYLIV 441

Query: 434 PRI--EHFAC--LVDLLGRAGKVEEAYDLIKQM 462
                +   C  L+D+  + GK+  A ++  +M
Sbjct: 442 RGFATDTLICNALIDMYSKCGKISFAREVFNRM 474



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 161/358 (44%), Gaps = 43/358 (12%)

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNT--SPENVLSVKEMFLKLDNKNLVSWNVMI 271
           ++L   +++    +K  ++  +S+L  +T    S   V+  + +F ++ N +++ WN +I
Sbjct: 22  KSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQII 81

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
             YA N     A+DLY  M   G+ PN  +   VL AC  L A+  G +IH + +   L+
Sbjct: 82  RAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLE 141

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            ++ +  ALVD YAKCG L EA+ +F  M  +DVV+W +MI+   + G   DAV L  +M
Sbjct: 142 SDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQM 201

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEG---------RYYFKIMTEQYKLVPRIEHFACL 442
              G+CP+S   V VL     A  L  G         R +   +     L+       CL
Sbjct: 202 QEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCL 261

Query: 443 V------DLLGRAGKV---------------EEAYDLIKQM----PMEPNERIWGSLVAA 477
           +      D++G   +V               +EA +L  QM     M+P     GS++ A
Sbjct: 262 LYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRA 321

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSN----IYAKAGRWGDVKRVRKFMNSK 531
           C   +++  G     +I  L        +LL N    +YAK G   D  R    MN K
Sbjct: 322 CAKLTDLSRGRKLHCYIIKLGXVLD---ILLGNTLLSMYAKCGVIDDAIRFFDXMNPK 376



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 103/206 (50%), Gaps = 1/206 (0%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           K  D+   +KLH  II    +  +  +G  L+  Y  CG + D    FD +  K+ V F+
Sbjct: 324 KLTDLSRGRKLHCYIIKLGXV-LDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFS 382

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            ++   V N     AL +++ M + G DPD  T   VL ACS   +L  G   H  ++  
Sbjct: 383 AIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVR 442

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G   +    N L+ MY KCG +  AR V N M   D+V+WN+M+ GY  +G   EAL + 
Sbjct: 443 GFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLF 502

Query: 220 REMESLRIKPDADTMASLLPSVTNTS 245
            ++ +L +KPD  T   LL S +++ 
Sbjct: 503 HDLLALGLKPDDITFICLLSSCSHSG 528



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 6/183 (3%)

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           +L AC    +L   +KIH++  +     +  + + L  +Y  C  +  AR +FD++    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
           V+ W  +I AY  +G    A+ L+  ML  G+ P+   +  VL ACS    +E+G    +
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG---VE 130

Query: 425 IMTEQYKLVPRIEHFAC--LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           I +         + F C  LVD   + G + EA  L   M    +   W +++A C LY 
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLYG 189

Query: 483 NMD 485
             D
Sbjct: 190 LCD 192


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 162/461 (35%), Positives = 254/461 (55%), Gaps = 39/461 (8%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACS-GSN 144
           +  E      V +N LI  +     + +A   + +M+  G  P   TY  VL AC  G+ 
Sbjct: 100 LLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTG 159

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
            +L+G+Q+H  VV  G+  +L   N LV MY +C  ++ A ++ + M  + VV+W S+++
Sbjct: 160 DVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLS 219

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL 264
           G  + GR DEA D                                     +F ++  ++ 
Sbjct: 220 GLTRLGRVDEARD-------------------------------------LFGRMPERDT 242

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           VSW  MI  Y   +   EA++++ +M+   +  +  ++ SV+ AC  L AL +G  +  Y
Sbjct: 243 VSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVY 302

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
           + R+ ++ +  + NAL+DMY+KCGS+  A  VF  M  +D  +WT++I    ++G G +A
Sbjct: 303 MSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEA 362

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           + +F +M+     PD + F+ VL+AC+HAGL+++GR +F  M E Y + P + H+ C++D
Sbjct: 363 IEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIID 422

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY 504
           L GRAGK+ EA D I QMPM PN  IWG+L+AAC ++ N +IG L  + +  + P  S  
Sbjct: 423 LFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTV 482

Query: 505 YVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMN 544
           Y LLSNIYAK  RW DV+R+R  +  KGIKK PG S +EMN
Sbjct: 483 YTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMN 523



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 132/285 (46%), Gaps = 17/285 (5%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G++ + R +F  +  ++ V +  +I  YV    + +AL +++ M       D +T   V+
Sbjct: 225 GRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVI 284

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
            AC+   +L +G  +   + + G+  + F GN L+ MY KCG ++ A  V  DM  +D  
Sbjct: 285 TACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKF 344

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
           TW +++ G A NG  +EA+++   M  +   PD  T   +L + T+     V   +E FL
Sbjct: 345 TWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGL--VDKGREFFL 402

Query: 258 KLDNK-----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
            +        N+V +  +I ++       EA+D   QM    + PN+    ++L AC   
Sbjct: 403 SMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMP---MTPNSTIWGTLLAAC--- 456

Query: 313 SALLLGRKIHRYVERKKLQ---PNLRLENALVDMYAKCGSLTEAR 354
             +    +I   V  + LQ    N  +   L ++YAKC    + R
Sbjct: 457 -RVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVR 500



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 37/187 (19%), Positives = 86/187 (45%), Gaps = 4/187 (2%)

Query: 57  NQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALH 116
            Q +  +  +G  L+  Y  CG +     VF ++ +++   +  +I     N    +A+ 
Sbjct: 305 RQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIE 364

Query: 117 VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV-GLDYNLFNGNGLVAMY 175
           ++  M      PD  T+  VL AC+ +  +  G +   S+ +   +  N+ +   ++ ++
Sbjct: 365 MFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLF 424

Query: 176 GKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
           G+ G + EA   ++ MP + +   W +++A    +G  +    V   +  L++ P+  T+
Sbjct: 425 GRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERL--LQMDPENSTV 482

Query: 235 ASLLPSV 241
            +LL ++
Sbjct: 483 YTLLSNI 489


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 181/485 (37%), Positives = 277/485 (57%), Gaps = 29/485 (5%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y   G   +++ +F  +  KNVV +N +I   + +    +A   ++ M      P   T 
Sbjct: 16  YWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAM------PQRNT- 68

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDY------NLFNGNGLVAMYGKCGCLKEARRV 187
                  +  N+++ GL  +  V +    +      N+ +   +V  Y K G +++AR +
Sbjct: 69  -------ASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARAL 121

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE 247
            N MP K+VV+W  M++GY +NG+FDEA ++  +M      PD + +A +   +T    E
Sbjct: 122 FNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQM------PDKNIVA-MTAMITGYCKE 174

Query: 248 -NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
                 K +F ++  ++L SWN MI  YA N    EA+ L+ QM   G++P+  ++ SVL
Sbjct: 175 GKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVL 234

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
            AC  L++L  GRK H  V +   +  + + NAL+ MY KCGS+ ++   F Q+   DVV
Sbjct: 235 TACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVV 294

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           SW +MI+A+   G    A+A F +M  + + PD I F+S+LSAC HAG + E   +F  M
Sbjct: 295 SWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSM 354

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
            E YK+VPR EHFACLVD+L R G+VE+AY +I++MP E +  IWG+L+AAC ++ N+ +
Sbjct: 355 IESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKL 414

Query: 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMND 545
           G LAA  I  L P  SG YV+LSNIYA AG WG+V RVR  M  +G+KK P  S +E+++
Sbjct: 415 GELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDN 474

Query: 546 QVQII 550
           +V   
Sbjct: 475 KVHFF 479



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 128/279 (45%), Gaps = 68/279 (24%)

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR-- 226
           N ++  Y K GC  E++R+   MP+K+VV+WNSM+AG  ++ R DEA    + M      
Sbjct: 10  NSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTA 69

Query: 227 ---------IKPDADTMASLLPSVTNTSPENVLS----------------VKEMFLKLDN 261
                    ++ D    AS L         NV+S                 + +F  +  
Sbjct: 70  SWNAMISGLVRYDRVEEASRL--FEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQ 127

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           KN+VSW VMI+ Y  N    EA +L+ QM      P+   VA        ++A++ G   
Sbjct: 128 KNVVSWTVMISGYVENGKFDEAENLFEQM------PDKNIVA--------MTAMITG--- 170

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
                                 Y K G   +A+ +FDQ+ C+D+ SW +MI+ Y  +G G
Sbjct: 171 ----------------------YCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSG 208

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
            +A+ L S+ML  G+ PD    +SVL+ACS    L+EGR
Sbjct: 209 EEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGR 247



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 78/163 (47%), Gaps = 9/163 (5%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +K H  +++     S  SI   L+  Y  CG ++D+   F +I + +VV +N +I ++  
Sbjct: 247 RKTHV-LVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFAR 305

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF- 166
           +  Y  AL  +  M  +  +PD  T+  +L AC  +  +   L    S+++    Y +  
Sbjct: 306 HGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIE---SYKIVP 362

Query: 167 ---NGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAG 205
              +   LV +  + G +++A +++ +MP   D   W +++A 
Sbjct: 363 RPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAA 405


>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 500

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 174/500 (34%), Positives = 276/500 (55%), Gaps = 39/500 (7%)

Query: 44  IKTLKKLHAQIIINQ-HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++  K+LHA +I +  H   N    L  + T  +   +   R +FD I + +   +N + 
Sbjct: 1   MQEAKRLHAHLITSGLHQQENHLRKLITLYTSSSSSSLHHARLLFDAIHHPSTYLYNTMF 60

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
           R Y  +     AL ++++M  HG  PD YT+P +LKACS    L  G ++HC  +K GL 
Sbjct: 61  RVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALAHLPKGQELHCQALKFGLG 120

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++F  N L+ +YG    +  ARRV + M  +D+ +W +++A YA +         C   
Sbjct: 121 GHVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASWTTLLACYANS---------C--- 168

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                                    +V + +++F ++  ++++S++ MIA Y   +   E
Sbjct: 169 -------------------------SVKAARKVFDEMPERSVISYSAMIAAYVRGNRFRE 203

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV-ERKKLQPNLRLENALV 341
           A+DL+ ++    IEP+   V SVL AC +L AL +GR ++ YV + K    + R+  AL+
Sbjct: 204 ALDLFRELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSYVCQSKGDYVDSRIATALI 263

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           DM+ KCGS+  A  VF+  + + V  WT+M+S   M G G   +  F KM+ SG+ P+ +
Sbjct: 264 DMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGVKPNGV 323

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
            FV++LS CSH+GL+ EG YYF  M   + + P +EHF C+VDLLGRAG +++A  LI +
Sbjct: 324 TFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLIDQAMQLISE 383

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
           MP EPN  IWGSL+ AC +Y N++IG LAA  +    P     Y+ L ++Y +AGRW +V
Sbjct: 384 MPFEPNAAIWGSLLNACRVYKNVEIGELAAQWLIKDEPWNGALYMTLLSLYREAGRWDEV 443

Query: 522 KRVRKFMNSKGIKKMPGASV 541
           ++V+  M   G +K PG S+
Sbjct: 444 EKVKLKMKEVGCRKGPGCSL 463


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 175/535 (32%), Positives = 293/535 (54%), Gaps = 35/535 (6%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           L+ LHA  +I     S+ ++   ++  Y  CG++ D + +F+ +  ++V+ +N L+  Y 
Sbjct: 165 LQCLHA-CVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYA 223

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
                 + L +   M   G +PD  T+  ++ A +  + L VG  +H  +++ GL+ +  
Sbjct: 224 QLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSH 283

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
               L+ MY KCG +  A R+   M  KDV++W +M++G  QN   D A+ V R M   R
Sbjct: 284 IETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSR 343

Query: 227 IKPDADTMASLLPSVT----------------------NTSPENVLSVK----------- 253
           + P   T+AS+L +                        +   +N L              
Sbjct: 344 VMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSC 403

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
            +F ++  +++VSWN +++ +A N    +A+ L+ +M      P++I+V S+L AC  + 
Sbjct: 404 SVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIG 463

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           AL  G+ IH +V +  L P + ++ ALVDMY+KCG L  A+  FD+M  QD+VSW+S+I+
Sbjct: 464 ALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIA 523

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
            YG  G+G  A+ ++S  L +G+ P+ + ++S+LSACSH GL+++G  +F  MT+ + + 
Sbjct: 524 GYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIE 583

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           PR+EH AC+VDLL RAG+VEEAY   K+M  +P+  + G L+ AC    N+++G + A  
Sbjct: 584 PRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVARE 643

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           I  L P  +G YV L++ YA   RW  V  V   M S  +KK+PG S +E++  +
Sbjct: 644 IVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTI 698



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 141/495 (28%), Positives = 242/495 (48%), Gaps = 41/495 (8%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
            H ++I++ +  S+  I   L+  Y   G     R VFD + ++NVV +  +I  Y    
Sbjct: 70  FHQRVIVDGY-SSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAG 128

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
            +  A  +Y  M   G  P   T   +L   SG   L+    +H  V++ G   ++   N
Sbjct: 129 EHDVAFSMYNIMRRQGIQPSSVT---MLGLLSGVLELVHLQCLHACVIQYGFGSDVALAN 185

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            ++ +Y KCG +++A+ +   M ++DV++WNS+V+GYAQ G   E L +   M++  I+P
Sbjct: 186 SMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEP 245

Query: 230 DADTMASLLPSVTNTSPENV--------------------LSVKEMFLKLDN-------- 261
           D  T  SL+ +    S   V                     S+  M+LK  N        
Sbjct: 246 DQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIF 305

Query: 262 -----KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
                K+++SW  MI+    N     AV ++ +M    + P+  ++ASVL AC +L +  
Sbjct: 306 EGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFP 365

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
           LG  +H Y+ R++++ ++  +N+LV MYAKCG L ++ +VFD+M  +D+VSW +++S + 
Sbjct: 366 LGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHA 425

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
            +G    A+ LF++M  +   PDSI  VS+L AC+  G L +G++    +T+   L P I
Sbjct: 426 QNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSC-LGPCI 484

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
                LVD+  + G +  A     +MP + +   W S++A    +   +  +       H
Sbjct: 485 LIDTALVDMYSKCGDLGSAQKCFDRMPQQ-DLVSWSSIIAGYGSHGKGETALRMYSDFLH 543

Query: 497 --LAPNQSGYYVLLS 509
             + PN   Y  +LS
Sbjct: 544 TGIQPNHVIYLSILS 558



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 188/396 (47%), Gaps = 33/396 (8%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +N +I        + D L  Y +M      PD +T+P ++KAC+  +    GL  H  V+
Sbjct: 16  YNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVI 75

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
             G   + +    L+  Y K G  + AR+V + M  ++VV W +M+  Y + G  D A  
Sbjct: 76  VDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFS 135

Query: 218 VCREMESLRIKPDADTMASLLPSV-------------------TNTSPEN---------- 248
           +   M    I+P + TM  LL  V                   ++ +  N          
Sbjct: 136 MYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCG 195

Query: 249 -VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
            V   + +F  +D ++++SWN +++ YA      E + L ++M+  GIEP+  +  S++ 
Sbjct: 196 RVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVS 255

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           A    S L +G+ +H ++ R  L+ +  +E +L+ MY KCG++  A  +F+ M  +DV+S
Sbjct: 256 AAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVIS 315

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-RYYFKIM 426
           WT+MIS    +     AV +F +ML S + P +    SVL+AC+  G    G   +  I+
Sbjct: 316 WTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYIL 375

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
            ++ KL   I     LV +  + G +E++  +  +M
Sbjct: 376 RQRIKL--DIPSQNSLVTMYAKCGHLEQSCSVFDRM 409



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 127/304 (41%), Gaps = 31/304 (10%)

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
           N    S+N +I   +      + +  Y  M      P+A +  S++ AC  L     G  
Sbjct: 10  NPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLS 69

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
            H+ V       +  +  +L++ Y+K G    AR VFD M  ++VV WT+MI  Y  +G+
Sbjct: 70  FHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGE 129

Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSA--------CSHAGLLEEGR----YYFKIMTE 428
              A ++++ M   G+ P S+  + +LS         C HA +++ G          M  
Sbjct: 130 HDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLN 189

Query: 429 QYKLVPRIEHFACLVDLL---------------GRAGKVEEAYDLIKQMP---MEPNERI 470
            Y    R+E    L +L+                + G + E   L+ +M    +EP+++ 
Sbjct: 190 VYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQT 249

Query: 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY-VLLSNIYAKAGRWGDVKRVRKFMN 529
           +GSLV+A  + S + +G +   HI      Q  +    L  +Y K G      R+ + M 
Sbjct: 250 FGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMM 309

Query: 530 SKGI 533
            K +
Sbjct: 310 HKDV 313


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 175/535 (32%), Positives = 293/535 (54%), Gaps = 35/535 (6%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           L+ LHA  +I     S+ ++   ++  Y  CG++ D + +F+ +  ++V+ +N L+  Y 
Sbjct: 165 LQCLHA-CVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYA 223

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
                 + L +   M   G +PD  T+  ++ A +  + L VG  +H  +++ GL+ +  
Sbjct: 224 QLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSH 283

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
               L+ MY KCG +  A R+   M  KDV++W +M++G  QN   D A+ V R M   R
Sbjct: 284 IETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSR 343

Query: 227 IKPDADTMASLLPSVT----------------------NTSPENVLSVK----------- 253
           + P   T+AS+L +                        +   +N L              
Sbjct: 344 VMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSC 403

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
            +F ++  +++VSWN +++ +A N    +A+ L+ +M      P++I+V S+L AC  + 
Sbjct: 404 SVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIG 463

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           AL  G+ IH +V +  L P + ++ ALVDMY+KCG L  A+  FD+M  QD+VSW+S+I+
Sbjct: 464 ALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIA 523

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
            YG  G+G  A+ ++S  L +G+ P+ + ++S+LSACSH GL+++G  +F  MT+ + + 
Sbjct: 524 GYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIE 583

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           PR+EH AC+VDLL RAG+VEEAY   K+M  +P+  + G L+ AC    N+++G + A  
Sbjct: 584 PRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVARE 643

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           I  L P  +G YV L++ YA   RW  V  V   M S  +KK+PG S +E++  +
Sbjct: 644 IVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTI 698



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 141/495 (28%), Positives = 242/495 (48%), Gaps = 41/495 (8%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
            H ++I++ +  S+  I   L+  Y   G     R VFD + ++NVV +  +I  Y    
Sbjct: 70  FHQRVIVDGY-SSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAG 128

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
            +  A  +Y  M   G  P   T   +L   SG   L+    +H  V++ G   ++   N
Sbjct: 129 EHDVAFSMYNIMRRQGIQPSSVT---MLGLLSGVLELVHLQCLHACVIQYGFGSDVALAN 185

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            ++ +Y KCG +++A+ +   M ++DV++WNS+V+GYAQ G   E L +   M++  I+P
Sbjct: 186 SMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEP 245

Query: 230 DADTMASLLPSVTNTSPENV--------------------LSVKEMFLKLDN-------- 261
           D  T  SL+ +    S   V                     S+  M+LK  N        
Sbjct: 246 DQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIF 305

Query: 262 -----KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
                K+++SW  MI+    N     AV ++ +M    + P+  ++ASVL AC +L +  
Sbjct: 306 EGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFP 365

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
           LG  +H Y+ R++++ ++  +N+LV MYAKCG L ++ +VFD+M  +D+VSW +++S + 
Sbjct: 366 LGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHA 425

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
            +G    A+ LF++M  +   PDSI  VS+L AC+  G L +G++    +T+   L P I
Sbjct: 426 QNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSC-LGPCI 484

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
                LVD+  + G +  A     +MP + +   W S++A    +   +  +       H
Sbjct: 485 LIDTALVDMYSKCGDLGSAQKCFDRMPQQ-DLVSWSSIIAGYGSHGKGETALRMYSDFLH 543

Query: 497 --LAPNQSGYYVLLS 509
             + PN   Y  +LS
Sbjct: 544 TGIQPNHVIYLSILS 558



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 188/396 (47%), Gaps = 33/396 (8%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +N +I        + D L  Y +M      PD +T+P ++KAC+  +    GL  H  V+
Sbjct: 16  YNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVI 75

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
             G   + +    L+  Y K G  + AR+V + M  ++VV W +M+  Y + G  D A  
Sbjct: 76  VDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFS 135

Query: 218 VCREMESLRIKPDADTMASLLPSV-------------------TNTSPEN---------- 248
           +   M    I+P + TM  LL  V                   ++ +  N          
Sbjct: 136 MYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCG 195

Query: 249 -VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
            V   + +F  +D ++++SWN +++ YA      E + L ++M+  GIEP+  +  S++ 
Sbjct: 196 RVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVS 255

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           A    S L +G+ +H ++ R  L+ +  +E +L+ MY KCG++  A  +F+ M  +DV+S
Sbjct: 256 AAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVIS 315

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-RYYFKIM 426
           WT+MIS    +     AV +F +ML S + P +    SVL+AC+  G    G   +  I+
Sbjct: 316 WTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYIL 375

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
            ++ KL   I     LV +  + G +E++  +  +M
Sbjct: 376 RQRIKL--DIPSQNSLVTMYAKCGHLEQSCSVFDRM 409



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 126/299 (42%), Gaps = 31/299 (10%)

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           S+N +I   +      + +  Y  M      P+A +  S++ AC  L     G   H+ V
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
                  +  +  +L++ Y+K G    AR VFD M  ++VV WT+MI  Y  +G+   A 
Sbjct: 75  IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSA--------CSHAGLLEEGR----YYFKIMTEQYKLV 433
           ++++ M   G+ P S+  + +LS         C HA +++ G          M   Y   
Sbjct: 135 SMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYCKC 194

Query: 434 PRIEHFACLVDLL---------------GRAGKVEEAYDLIKQMP---MEPNERIWGSLV 475
            R+E    L +L+                + G + E   L+ +M    +EP+++ +GSLV
Sbjct: 195 GRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLV 254

Query: 476 AACCLYSNMDIGILAADHIFHLAPNQSGYY-VLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           +A  + S + +G +   HI      Q  +    L  +Y K G      R+ + M  K +
Sbjct: 255 SAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDV 313


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 173/505 (34%), Positives = 276/505 (54%), Gaps = 38/505 (7%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVY-KNMSVHGFDPDCYT 132
           Y   G +   R +FD    +N   +N +I  YV N    +A+ ++ + M    F  D  T
Sbjct: 265 YAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVT 324

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           +   L A S    L +G Q+H  ++K      +   N ++ MY +CG +  + +V ++M 
Sbjct: 325 FLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNML 384

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV--- 249
            +DVVTWN+MV+ + QNG  DE L +  EM+      D+ T+ +LL   +N   + +   
Sbjct: 385 ERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQ 444

Query: 250 -----------------------------LSVKEMFLKLD--NKNLVSWNVMIAVYANNS 278
                                         + +++F K    +++  +WN MIA Y  N 
Sbjct: 445 AHAYLIRHGIQFEGMDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNG 504

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
           +  E   ++ +M    + PNA+++AS+LPAC  +  + LG++IH +  R  L  N+ +  
Sbjct: 505 LSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGT 564

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           AL+DMY+K G++T A  VF +   ++ V++T+MI +YG  G G  A++LF  ML SG+ P
Sbjct: 565 ALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKP 624

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           DS+ FV++LSACS+AGL++EG   F+ M  +YK+ P  EH+ C+ D+LGR G+V EAY+ 
Sbjct: 625 DSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEF 684

Query: 459 IKQMPMEPNE-RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ--SGYYVLLSNIYAKA 515
           +K +  E N  RIWGSL+ AC ++   ++G + A+ +  +      +GY+VLLSNIYA  
Sbjct: 685 VKGLGEEGNTFRIWGSLLGACRIHGEFELGKVVANKLLEMEKGSXLTGYHVLLSNIYAAE 744

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS 540
           G W +V RVRK M  KG+ K  G S
Sbjct: 745 GNWDNVDRVRKEMRQKGLMKEAGCS 769



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 200/447 (44%), Gaps = 59/447 (13%)

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP--DCYTYPCVLKACSG 142
           H+FD I     V +N +I  ++ N +  DAL  Y  M      P  D YT+   LKAC+ 
Sbjct: 58  HLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASP-SPKFDSYTFSSTLKACAQ 116

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA---------------RRV 187
           + SL +G  +HC V++     +    N L+ MY  C  L E                RRV
Sbjct: 117 ARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTC--LTEVPYLGTAYDFNNCDLVRRV 174

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV---TNT 244
            + M  ++VV WN+M++ Y +  R  EA  + R M  + I+P   +  ++ P+V    + 
Sbjct: 175 FDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDY 234

Query: 245 SPENVLS--------------------------------VKEMFLKLDNKNLVSWNVMIA 272
              NVL                                  +E+F     +N   WN MI 
Sbjct: 235 DNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIG 294

Query: 273 VYANNSMPAEAVDLYLQ-MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
            Y  N+ P EA+DL++Q ME      + ++  S L A   L  L LGR++H Y+ +    
Sbjct: 295 GYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTI 354

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
             + + NA++ MY++CGS+  +  VF  M  +DVV+W +M+SA+  +G   + + L  +M
Sbjct: 355 LQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEM 414

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
              G   DS+   ++LS  S+    E G+     +         ++ +  L+D+  ++G 
Sbjct: 415 QKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDGY--LIDMYAKSGL 472

Query: 452 VEEAYDLI-KQMPMEPNERIWGSLVAA 477
           +  A  L  K    + +E  W +++A 
Sbjct: 473 ITTAQQLFEKNSXYDRDEATWNAMIAG 499



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 113/487 (23%), Positives = 218/487 (44%), Gaps = 63/487 (12%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGAC-------GQMVD------TRHVFDEI 90
           +K  K LH  ++   H  S+  +   L+  Y  C       G   D       R VFD +
Sbjct: 120 LKLGKALHCHVL-RSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTM 178

Query: 91  TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGL 150
             +NVV +N +I  YV      +A  +++ M   G  P   ++  V  A    N      
Sbjct: 179 RKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDYDNAN 238

Query: 151 QIHCSVVKVGLDY--NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
            ++  VVK+G DY  + F  +  + MY + GC+  AR + +    ++   WN+M+ GY Q
Sbjct: 239 VLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQ 298

Query: 209 NGRFDEALDV-CREMESLRIKPDADTMASLLPSVTNTS--------------PENVLSVK 253
           N    EA+D+  + MES +   D  T  S L +++                    +L V 
Sbjct: 299 NNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVV 358

Query: 254 -------------------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
                              ++F  +  +++V+WN M++ +  N +  E + L  +M+  G
Sbjct: 359 ILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQG 418

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
              +++++ ++L    +L +  +G++ H Y+ R  +Q    ++  L+DMYAK G +T A+
Sbjct: 419 FMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE-GMDGYLIDMYAKSGLITTAQ 477

Query: 355 TVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
            +F++     +D  +W +MI+ Y  +G   +  A+F KM+   + P+++   S+L AC+ 
Sbjct: 478 QLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNP 537

Query: 413 AGLLEEGR----YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
            G +  G+    +  +    Q   V        L+D+  ++G +  A ++  +  +E N 
Sbjct: 538 MGTIGLGKQIHGFAIRCFLNQNVFVG-----TALLDMYSKSGAITYAENVFAE-TLEKNS 591

Query: 469 RIWGSLV 475
             + +++
Sbjct: 592 VTYTTMI 598



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 95/195 (48%), Gaps = 4/195 (2%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT--NKNVVFFNVLIRSY 105
           K+ HA +I  +H      +   L+  Y   G +   + +F++ +  +++   +N +I  Y
Sbjct: 443 KQAHAYLI--RHGIQFEGMDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGY 500

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
             N L  +   V++ M      P+  T   +L AC+   ++ +G QIH   ++  L+ N+
Sbjct: 501 TQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNV 560

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           F G  L+ MY K G +  A  V  +   K+ VT+ +M+  Y Q+G  + AL +   M   
Sbjct: 561 FVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGS 620

Query: 226 RIKPDADTMASLLPS 240
            IKPD+ T  ++L +
Sbjct: 621 GIKPDSVTFVAILSA 635



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 10/172 (5%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H    I   L+ N  +G  L+  Y   G +    +VF E   KN V +  +I SY  
Sbjct: 545 KQIHG-FAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQ 603

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           + +   AL ++  M   G  PD  T+  +L ACS +  +  GL+I  S+ +   +Y +  
Sbjct: 604 HGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMER---EYKIQP 660

Query: 168 GNG----LVAMYGKCGCLKEARRVLNDMPSK--DVVTWNSMVAGYAQNGRFD 213
            +     +  M G+ G + EA   +  +  +      W S++     +G F+
Sbjct: 661 SSEHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFE 712


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 181/541 (33%), Positives = 285/541 (52%), Gaps = 38/541 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++HA +I      +  +IG  L+  Y   G + D   VF+ +  K+ V +N LI     
Sbjct: 406 REVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQ 465

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    DA   +  M   G  P  +T    L +C+    +++G QIHC  +K+GLD ++  
Sbjct: 466 NECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSV 525

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQN-GRFDEALDVCREMESLR 226
            N L+A+Y + GC  E  +V + MP  D V+WNS++   + +     +A+    +M    
Sbjct: 526 SNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGG 585

Query: 227 IKPDADTMASLLPSVTNTSPENVL---------------------------------SVK 253
                 T  ++L +V++ S   V                                    +
Sbjct: 586 WGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECE 645

Query: 254 EMFLKL-DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           ++F ++ + ++ VSWN MI+ Y +N +  +A+DL   M   G   ++ + A++L AC  +
Sbjct: 646 KIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASV 705

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
           + L  G ++H    R  L+ ++ + +ALVDMY+KCG +  A   F+ M  ++V SW SMI
Sbjct: 706 ATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMI 765

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           S Y   G G  A+ LF++M++ G  PD + FV VLSACSH G +EEG  +FK M+E Y+L
Sbjct: 766 SGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRL 825

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS--NMDIGILA 490
            PR+EHF+C+VDLLGRAGK++E  D I  MPM+PN  IW +++ ACC  +  N ++G  A
Sbjct: 826 SPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRA 885

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQI 549
           A+ +  L P  +  YVLL+N+YA   +W DV + R  M    +KK  G S V M D V +
Sbjct: 886 AEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHV 945

Query: 550 I 550
            
Sbjct: 946 F 946



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 126/515 (24%), Positives = 233/515 (45%), Gaps = 67/515 (13%)

Query: 11  FSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKL 70
           FS+++  ++L+   Q     G  C++           ++LH Q I       N  +   L
Sbjct: 68  FSSSETFESLINRYQ-----GSCCSE---------EARELHLQSI-KYGFVGNLFLSNTL 112

Query: 71  MRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDC 130
           +  Y   G +   + +FDE++N+N+V +  LI  Y  N    +A   +++M   GF P+ 
Sbjct: 113 INIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNH 172

Query: 131 YTYPCVLKAC--SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC-GCLKEARRV 187
           Y +   L+AC  SG +   +G+QIH  + K     ++   N L++MYG C     +AR V
Sbjct: 173 YAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSV 232

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME----SLRIKPDADTMASLLPSVTN 243
            + +  ++ ++WNS+++ Y++ G    A D+   M+        KP+  T  SL+ +  +
Sbjct: 233 FDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACS 292

Query: 244 TSPENVLSVKEMFLKLDN----KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP-- 297
           +    +  +++M  +++     ++L   + +++ +A   +  +A +++ QM V  +    
Sbjct: 293 SVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMN 352

Query: 298 ----------------------------NAISVASVLPACGDLSALLLGRK----IHRYV 325
                                       N+ S   +L A  + S L  GR+    +H +V
Sbjct: 353 GLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHV 412

Query: 326 ERKKLQPN-LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
            R  L  N + + N LV+MYAK G++ +A +VF+ M  +D VSW S+IS    +    DA
Sbjct: 413 IRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDA 472

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV--PRIEHFACL 442
              F +M  +G  P +   +S LS+C+  G +  G    +I  +  KL     +     L
Sbjct: 473 AESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGE---QIHCDGLKLGLDTDVSVSNAL 529

Query: 443 VDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           + L    G   E   +   MP E ++  W S++ A
Sbjct: 530 LALYAETGCFTECLKVFSLMP-EYDQVSWNSVIGA 563



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 198/454 (43%), Gaps = 48/454 (10%)

Query: 70  LMRTYGAC-GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG--- 125
           L+  YG+C     D R VFD I  +N + +N +I  Y        A  ++ +M   G   
Sbjct: 215 LISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGF 274

Query: 126 -FDPDCYTYPCVLK-ACSGSN-SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
            F P+ YT+  ++  ACS  +  L V  Q+   V K G   +L+  + LV+ + + G   
Sbjct: 275 SFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTD 334

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
           +A+ +   M  ++VV+ N ++ G  +  + + A  V  EM+ L +  ++D+   LL + +
Sbjct: 335 DAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDL-VGINSDSYVVLLSAFS 393

Query: 243 NTS---------------------PENVLSVK-----------------EMFLKLDNKNL 264
             S                      +N +++                   +F  +  K+ 
Sbjct: 394 EFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDS 453

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           VSWN +I+    N    +A + + +M   G  P+  ++ S L +C  L  ++LG +IH  
Sbjct: 454 VSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCD 513

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY-D 383
             +  L  ++ + NAL+ +YA+ G  TE   VF  M   D VSW S+I A   S      
Sbjct: 514 GLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQ 573

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV 443
           AV  F +M+  G     + F+++LSA S    L E  +    +  +Y L         L+
Sbjct: 574 AVKYFLQMMRGGWGLSRVTFINILSAVSSLS-LHEVSHQIHALVLKYCLSDDTAIGNALL 632

Query: 444 DLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
              G+ G++ E   +  +M    +E  W S+++ 
Sbjct: 633 SCYGKCGEMNECEKIFARMSETRDEVSWNSMISG 666



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 118/277 (42%), Gaps = 49/277 (17%)

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
            R++H    +     NL L N L+++Y + G L  A+ +FD+M  +++V+W  +IS Y  
Sbjct: 90  ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQ 149

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG------------LLEEGRY---- 421
           +G+  +A A F  M+ +G  P+  AF S L AC  +G            L+ + RY    
Sbjct: 150 NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDV 209

Query: 422 -YFKIMTEQYKL----------------VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM 464
               ++   Y                  +     +  ++ +  R G    AYDL   M  
Sbjct: 210 VVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQK 269

Query: 465 E-------PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY----YV--LLSNI 511
           E       PNE  +GSL+   C  S++D G+   + +      +SG+    YV   L + 
Sbjct: 270 EGLGFSFKPNEYTFGSLITTAC--SSVDFGLCVLEQMLARV-EKSGFLQDLYVSSALVSG 326

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQ 548
           +A+ G   D K + + M  + +  M G  V +  Q Q
Sbjct: 327 FARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQ 363


>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
          Length = 602

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 174/520 (33%), Positives = 284/520 (54%), Gaps = 39/520 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++K  +++HA ++      S    G  L+  Y ACG +   R VFDE+    +V + ++I
Sbjct: 106 EVKEGEEVHASVVRTGFACSEFVSG-ALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLII 164

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
           R+YV       AL +++ M   G  PD      V+ AC     L V   +HC + K G++
Sbjct: 165 RAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIE 224

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            + F  + L++ YG+CG L  A R   + P K++V WN+M+    ++   +         
Sbjct: 225 VDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELG------- 277

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                                         K++F  + ++++VSWN MI  +A      E
Sbjct: 278 ------------------------------KQLFQSMPDRDVVSWNSMIGGFARIGQYQE 307

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A+  + +ME  G+ PNA+++ S L AC    AL  G  IH YV++  +  +  L+++L+D
Sbjct: 308 ALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLID 367

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MY+KCG + +A  +F++   +D+ +WTS++    M G+G  A+  FSKM  + + PD + 
Sbjct: 368 MYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVT 427

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
            V VLSAC+HAGLL++G +YF+ M + + LVP++EH+  +VDLLGR G ++EAYDLI  M
Sbjct: 428 MVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKEAYDLIMGM 487

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
           PME NE IWG+ ++AC +++N+++G +AA  +  L P      V+LSN+YA+  +W    
Sbjct: 488 PMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLXPRDPWARVMLSNMYAEEAKWDRSM 547

Query: 523 RVRKFMNSKGIKKMPG-ASVEMNDQVQIIALPLRSSKCLT 561
            +RK +  KG+KK PG +S+E+N  V    +   S  C T
Sbjct: 548 GLRKEIKKKGLKKSPGCSSIEVNGSVHGFLVGDNSHPCYT 587


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 181/578 (31%), Positives = 305/578 (52%), Gaps = 75/578 (12%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRT--YGACGQMVDTRHVFDEITNKNVVFFNVL 101
            K LK++HAQ++    LH +P    +L     + +   +   R VFD+I   N+  +N+L
Sbjct: 152 FKQLKQIHAQMLRTNKLH-DPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNIL 210

Query: 102 IRSYVNNYLYYDALHVYKNMSVHG--FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
           IR+   +     ++ V+  M +H   F P+ +T+P ++KA +     LVG  +H   +K 
Sbjct: 211 IRALATSSDPIQSVLVFIRM-LHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKT 269

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLN--DMPSKDVVTWNSMVAGYAQNGRFDEALD 217
               ++F  N L+  Y  CG L  A  V    +  +KD+V+WNSMV G+ Q G  D+ALD
Sbjct: 270 SFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALD 329

Query: 218 VCREMESLRIKPDADTMASLLPSVTNT--------------SPENVLSVK------EMFL 257
           +   M +  + P+A TM S++ +   T                E ++++       +MF+
Sbjct: 330 LFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFV 389

Query: 258 K-------------LDNKNLVSW-------------------------------NVMIAV 273
           K             ++ +++VSW                               NV+I+ 
Sbjct: 390 KCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISG 449

Query: 274 YANNSMPAEAVDLY--LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           Y  +  P EA+ ++  LQ+   G  P+ +++ S L AC  L A+ +G  IH Y++++++Q
Sbjct: 450 YEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQ 509

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            N  L  +L+DMY+K G + +A  VF  +  +DV  W++MI+   M G+G  A+ LF  M
Sbjct: 510 LNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDM 569

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
             + + P+S+ F ++L ACSH+GL++EG+  F  M   Y +VP+ +H++C+VD+LGRAG 
Sbjct: 570 QETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGH 629

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
           +EEA   I+ MP+ P+  +WG+L+ ACC++ N+++   A   +  + P   G YVLLSN+
Sbjct: 630 LEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNL 689

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           YAK G W  V  +R+ M   G+KK  G +S+E++  V 
Sbjct: 690 YAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVH 727


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 180/525 (34%), Positives = 283/525 (53%), Gaps = 21/525 (4%)

Query: 32  DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMV-DTRH----V 86
           +A   +L K   +K  K++HAQI     LH++P +  KL+     C   + D  H    +
Sbjct: 3   EAWVSLLSKCSSLKPTKQIHAQIC-KTGLHTDPLVFGKLLLH---CAITISDALHYALRL 58

Query: 87  FDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNS 145
           F    N +    N LIRS   +     +LH +  +       PD +T+   LKA + S  
Sbjct: 59  FHHFPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRH 118

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           L  G+Q+H    + G D ++F G  L++MY +CG    ARRV ++M   +VVTWN+++  
Sbjct: 119 LRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTA 178

Query: 206 YAQNGRFDEALDV--CREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKN 263
             + G  + A DV  C  + +L       +   +L          +   + +F ++  ++
Sbjct: 179 AFRCGDVEGAQDVFGCMPVRNL------TSWNGMLAGYAKAGELGL--ARRVFYEMPLRD 230

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR 323
            VSW+ MI  +A+N    EA   + ++    I  N +S+  VL AC    A   G+ +H 
Sbjct: 231 EVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHG 290

Query: 324 YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR-CQDVVSWTSMISAYGMSGQGY 382
           +VE+        + NAL+D Y+KCG++  AR VF  M   + +VSWTS+I+   M G G 
Sbjct: 291 FVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGE 350

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL 442
           +A+ LF +M  SG+ PD I F+S+L ACSH+GL+EEG   F  M   Y + P IEH+ C+
Sbjct: 351 EAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCM 410

Query: 443 VDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS 502
           VDL GRA ++++AY+ I +MP+ PN  IW +L+ AC ++ N+++  L    +  + P+ S
Sbjct: 411 VDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNS 470

Query: 503 GYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQV 547
           G +VLLSN+YA AG+W DV  +R+ M    +KK PG S+   D+V
Sbjct: 471 GDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKV 515


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 192/601 (31%), Positives = 302/601 (50%), Gaps = 98/601 (16%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC ++    P  +     H  I  N    SN  I   L+  Y  CG + +   +FDEIT 
Sbjct: 19  ACGEL----PSYRCGSAFHGLICCNG-FESNVFICNALVAMYSRCGSLEEASMIFDEITQ 73

Query: 93  K---NVVFFNVLIRSYVNNYLYYDALHVYKNMS--VH----GFDPDCYTYPCVLKACSGS 143
           +   +V+ +N ++ ++V +   + AL ++  M+  VH        D  +   +L AC   
Sbjct: 74  RGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSL 133

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
            ++    ++H + ++ G   ++F GN L+  Y KCG ++ A +V N M  KDVV+WN+MV
Sbjct: 134 KAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMV 193

Query: 204 AGYA-----------------------------------QNGRFDEALDVCREMESLRIK 228
           AGY+                                   Q G   EAL+V R+M      
Sbjct: 194 AGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSL 253

Query: 229 PDADTMASLLPSVTNTSPE------NVLSVKEMFLKLDN--------------------- 261
           P+  T+ S+L +  +          +  S+K   L LDN                     
Sbjct: 254 PNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSK 313

Query: 262 ------------------KNLVSWNVMIAVYANNSMPAEAVDLYLQM--EVHGIEPNAIS 301
                             +N+V+W VMI  +A      +A+ L+++M  E +G+ PNA +
Sbjct: 314 CRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYT 373

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPN--LRLENALVDMYAKCGSLTEARTVFDQ 359
           ++ +L AC  L+A+ +G++IH YV R     +    + N L++MY+KCG +  AR VFD 
Sbjct: 374 ISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDS 433

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
           M  +  +SWTSM++ YGM G+G +A+ +F KM  +G  PD I F+ VL ACSH G++++G
Sbjct: 434 MSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQG 493

Query: 420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
             YF  M+  Y L PR EH+A  +DLL R G++++A+  +K MPMEP   +W +L++AC 
Sbjct: 494 LSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACR 553

Query: 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA 539
           ++SN+++   A + +  +     G Y L+SNIYA AGRW DV R+R  M   GIKK PG 
Sbjct: 554 VHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGC 613

Query: 540 S 540
           S
Sbjct: 614 S 614



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 191/429 (44%), Gaps = 92/429 (21%)

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D +T P VLKAC    S   G   H  +   G + N+F  N LVAMY +CG L+EA  + 
Sbjct: 9   DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 68

Query: 189 NDMPSK---DVVTWNSMVAGYAQNGRFDEALDVCREM------ESLRIKPDADTMASLLP 239
           +++  +   DV++WNS+V+ + ++     ALD+  +M      +    + D  ++ ++LP
Sbjct: 69  DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP 128

Query: 240 -----------------SVTNTSPENVL----------------SVKEMFLKLDNKNLVS 266
                            ++ N +  +V                 +  ++F  ++ K++VS
Sbjct: 129 ACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS 188

Query: 267 WNVMIAVYANN----------------SMP-------------------AEAVDLYLQME 291
           WN M+A Y+ +                ++P                    EA++++ QM 
Sbjct: 189 WNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMI 248

Query: 292 VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL----------QPNLRLENALV 341
             G  PN +++ SVL AC  L A   G +IH Y  +  L            +L + NAL+
Sbjct: 249 FSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALI 308

Query: 342 DMYAKCGSLTEARTVFDQMRCQD--VVSWTSMISAYGMSGQGYDAVALFSKMLMS--GLC 397
           DMY+KC S   AR++FD +  ++  VV+WT MI  +   G   DA+ LF +M+    G+ 
Sbjct: 309 DMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVA 368

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA-CLVDLLGRAGKVEEAY 456
           P++     +L AC+H   +  G+     +   ++        A CL+++  + G V+ A 
Sbjct: 369 PNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTAR 428

Query: 457 DLIKQMPME 465
            +   M  +
Sbjct: 429 HVFDSMSQK 437



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 9/126 (7%)

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
           G   +  ++  VL ACG+L +   G   H  +     + N+ + NALV MY++CGSL EA
Sbjct: 5   GTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 64

Query: 354 RTVFD---QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM------SGLCPDSIAFV 404
             +FD   Q    DV+SW S++SA+  S   + A+ LFSKM +      +    D I+ V
Sbjct: 65  SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 124

Query: 405 SVLSAC 410
           ++L AC
Sbjct: 125 NILPAC 130


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 158/453 (34%), Positives = 259/453 (57%), Gaps = 46/453 (10%)

Query: 98  FNVLIRSYVNNYLY-----YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           +N LIR++V          +  + ++  M  HG  PD +T+P +L++ +  + L +G  +
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  +++ GL  + F    L++MY  CG L  AR+V +++P  D+ +WNS++    Q G  
Sbjct: 87  HAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLV 146

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIA 272
           D A                                     + +F  +  +N++SW+ MI 
Sbjct: 147 DMA-------------------------------------RNLFAVMPERNVISWSCMIN 169

Query: 273 VYANNSMPAEAVDLYLQMEVHGI---EPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
            Y       EA+ L+ +M++ G+    PN  +++ VL ACG L AL  G+  H Y+++  
Sbjct: 170 GYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCG 229

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-QDVVSWTSMISAYGMSGQGYDAVALF 388
           +  ++ L  AL+DMYAKCGS+ +A  VF  +   +DV++W++MIS   M G   + V LF
Sbjct: 230 MPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLF 289

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
           SKM+  G+ P+++ F++V  AC H GL+ EG+ Y + MTE Y ++P I+H+ C+VDL GR
Sbjct: 290 SKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGR 349

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508
           AG+++EA++++K MPMEP+  +WG+L++   ++ +++   LA   +  L P  SG YVLL
Sbjct: 350 AGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLL 409

Query: 509 SNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           SN+YAK GRW DV+ VR  M + GIKK+PG S+
Sbjct: 410 SNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSL 442



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 164/368 (44%), Gaps = 67/368 (18%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--------------- 92
           + +HAQI+    L  +P +   L+  Y +CG +   R VFDEI                 
Sbjct: 84  RSVHAQIL-RFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQ 142

Query: 93  ----------------KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD---PDCYTY 133
                           +NV+ ++ +I  YV    Y +AL +++ M + G +   P+ +T 
Sbjct: 143 AGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTM 202

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM-P 192
             VL AC    +L  G   H  + K G+  ++  G  L+ MY KCG +++A  V +++ P
Sbjct: 203 SGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGP 262

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSV 252
           +KDV+ W++M++G A +G  +E + +  +M +  ++P+A T  ++  +  +     ++S 
Sbjct: 263 NKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHG---GLVSE 319

Query: 253 KEMFLKLDNKN------LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
            + +L+   ++      +  +  M+ +Y       EA ++   M    +EP+ +      
Sbjct: 320 GKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMP---MEPDVLV----- 371

Query: 307 PACGDLSALLLGRKIHRYVE--RKKLQPNLRLENA-------LVDMYAKCGSLTEARTVF 357
                  ALL G ++H  +E     L+  + LE         L ++YAK G   + R V 
Sbjct: 372 -----WGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVR 426

Query: 358 DQMRCQDV 365
           D M    +
Sbjct: 427 DLMETMGI 434



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 125/277 (45%), Gaps = 42/277 (15%)

Query: 246 PENVLSVKEMFLKLDNKNLVS--WNVMIAVY----ANNSMPAEA-VDLYLQMEVHGIEPN 298
           P  ++S     L   +  L S  WN +I  +    A  + P  + + ++++M  HG++P+
Sbjct: 4   PTRLISSTHPTLHFSHPTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPD 63

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
             +   +L +    S L LGR +H  + R  L  +  ++ +L+ MY+ CG+L  AR VFD
Sbjct: 64  FHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFD 123

Query: 359 Q-------------------------------MRCQDVVSWTSMISAYGMSGQGYDAVAL 387
           +                               M  ++V+SW+ MI+ Y   GQ  +A+AL
Sbjct: 124 EIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALAL 183

Query: 388 FSKMLMSGLC---PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           F +M M G+    P+      VL+AC   G LE G++    + +    V  +   A L+D
Sbjct: 184 FREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTA-LID 242

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
           +  + G VE+A  +   +    +   W ++++   ++
Sbjct: 243 MYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMH 279


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 177/589 (30%), Positives = 305/589 (51%), Gaps = 68/589 (11%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N++++ Y  +  +   +A+ + ++    N      ++  Y   G +   + +F  + N++
Sbjct: 44  NNLINAYSKLGNIT--YARHVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRD 101

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDPDCYTYPCVLKACSGSNSLLVGLQIH 153
            V +N LI  YV      +A+  Y +M   G  + +  T+  +L   S    + +G QIH
Sbjct: 102 GVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIH 161

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGK-------------------------------CGCLK 182
             +VK G    +F G+ LV MY K                                G +K
Sbjct: 162 GQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVK 221

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS-- 240
           +++R+ + M  +D ++W +M+ G  QNG   EA+D+ R+M    +  D  T  S+L +  
Sbjct: 222 DSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACG 281

Query: 241 ---------------VTNTSPENVL-------------SVK---EMFLKLDNKNLVSWNV 269
                          + +    NV              SV+    +F ++ NKN+VSW  
Sbjct: 282 GLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTA 341

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           M+  Y  N    EAV ++  M+ +GIEP+  ++ SV+ +C +L++L  G + H       
Sbjct: 342 MLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSG 401

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           L   + + NAL+ +Y KCGS+ ++  +FD+M  +D VSWT+++S Y   G+  + + LF 
Sbjct: 402 LISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFE 461

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           +ML+ GL PD++ F++VLSACS AGL+E G+ YF+ M + + ++P  +H+ C++DL GRA
Sbjct: 462 RMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRA 521

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G++EEA + I +MP  P+   W +L+++C LY N +IG  AA+ +  L P     Y+LLS
Sbjct: 522 GRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLS 581

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRSS 557
           +IYA  G+W +V ++R+ M  KG +K PG S ++   +V I +   +SS
Sbjct: 582 SIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSS 630



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 135/315 (42%), Gaps = 69/315 (21%)

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
           K C  + +     ++HC ++K   +   F  N L+  Y K G +  AR V + MP  +  
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
           +WN+M++ Y+++G                   D  TM                  +E+F 
Sbjct: 73  SWNTMLSAYSKSG-------------------DLSTM------------------QEIFS 95

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI-EPNAISVASVLPACGDLSALL 316
            + N++ VSWN +I+ Y       EAV  Y  M   G+   N I+ +++L        + 
Sbjct: 96  IMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVD 155

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ----------------- 359
           LGR+IH  + +      + + ++LVDMYAK G ++ A  VFD+                 
Sbjct: 156 LGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLL 215

Query: 360 --------------MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
                         M+ +D +SWT+MI+    +G   +A+ LF  M   G+  D   F S
Sbjct: 216 RSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGS 275

Query: 406 VLSACSHAGLLEEGR 420
           VL+AC     L+EG+
Sbjct: 276 VLTACGGLRALKEGK 290



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 10/138 (7%)

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           +K+H  + +    P   L N L++ Y+K G++T AR VFD+M   +  SW +M+SAY  S
Sbjct: 25  KKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKS 84

Query: 379 GQGYDAVALFSKMLMSGLCP--DSIAFVSVLSA-CSHAGLLEEGRYYFKIMTEQYKLVPR 435
           G       +FS M      P  D +++ S++S    +  ++E  + Y  +M +    + R
Sbjct: 85  GDLSTMQEIFSIM------PNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNR 138

Query: 436 IEHFACLVDLLGRAGKVE 453
           I  F+ ++ L+   G V+
Sbjct: 139 IT-FSTMLLLVSSQGCVD 155


>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 159/456 (34%), Positives = 261/456 (57%), Gaps = 37/456 (8%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +F  +  +    +N ++R++ +       L +YK M   GF P+ YT+  +L+AC+  + 
Sbjct: 44  LFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSD 103

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           L  G+ +H   V++G +   F  NGL+ +Y  C C+  ARR+ +   ++DVVTW +++ G
Sbjct: 104 LSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVING 163

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           YA++G+                                     V+  +++F ++  KN V
Sbjct: 164 YAKSGQ-------------------------------------VVVARQLFDEMPEKNAV 186

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           SW+ MI  YA   +  EA++L+  M++ G  PN  ++   L AC  L AL  GR IH YV
Sbjct: 187 SWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYV 246

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
           +R ++  +  L  AL+DMYAKCG +  A  VFD+M  +DV ++TS+IS     G    A+
Sbjct: 247 DRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAI 306

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
            +F++M   G+CP+ + F+ +LSACS  GL+EEG   FK MT  Y + P ++H+ CLVDL
Sbjct: 307 EMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDL 366

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           LGRAG +E+A  ++++MP+EP+  + G+L+ AC ++ ++++G    + +   + +  G +
Sbjct: 367 LGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVH 426

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           VLLSN+YA A +W DV +VRK M  K +KK+PG S+
Sbjct: 427 VLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSL 462



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 123/250 (49%), Gaps = 6/250 (2%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y   GQ+V  R +FDE+  KN V ++ +I  Y    L+ +AL ++ +M + GF P+    
Sbjct: 164 YAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAI 223

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
              L AC+   +L  G  IH  V +  +  +   G  L+ MY KCGC++ A RV ++M  
Sbjct: 224 VGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLD 283

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS--PENVLS 251
           +DV  + S+++G A +G    A+++   M++  + P+  T   LL + +      E +  
Sbjct: 284 RDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRI 343

Query: 252 VKEMFLKLDNKNLVS-WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
            K M      + +V  +  ++ +     M  +A  +  +M    +EP++  + ++L AC 
Sbjct: 344 FKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMP---LEPDSYVLGALLNACR 400

Query: 311 DLSALLLGRK 320
               + LG++
Sbjct: 401 VHGDVELGKE 410



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 1/128 (0%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y  CG +     VFDE+ +++V  F  LI    N+     A+ ++  M   G
Sbjct: 257 LGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEG 316

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV-GLDYNLFNGNGLVAMYGKCGCLKEA 184
             P+  T+ C+L ACS    +  GL+I  S+  + G++  + +   LV + G+ G L++A
Sbjct: 317 VCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDA 376

Query: 185 RRVLNDMP 192
           +RV+ +MP
Sbjct: 377 KRVVREMP 384


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 166/516 (32%), Positives = 269/516 (52%), Gaps = 34/516 (6%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y   G++  +  VFDE+  +N V +  +I   V        L  +  M    
Sbjct: 153 VGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSK 212

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            + D Y Y   LKA + S +L  G  IH   +K G D N F  N L  MY KCG L    
Sbjct: 213 VEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGL 272

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN-- 243
                M + DVV+W ++V  Y Q G+ D  L   + M +  + P+  T ++++    N  
Sbjct: 273 HTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFA 332

Query: 244 -------------------------------TSPENVLSVKEMFLKLDNKNLVSWNVMIA 272
                                          +    + SV ++F  +  +++++W+ +IA
Sbjct: 333 RLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIA 392

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y+      EA +   +M   G +PN  ++ASVL  CG ++ L  G+++H +V    L+ 
Sbjct: 393 AYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQ 452

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
              + +AL+ MYAKCGS+ EA  +F      D++SWT+MIS Y   G   +A+ LF  + 
Sbjct: 453 TSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQ 512

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
             GL PDS+ F+ VL+ACSHAG+++ G YYF  M++ Y + P  EH+ C++DLL RAG++
Sbjct: 513 KVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRL 572

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
            +A  LI+ MP++ ++ +W +L+ AC ++ ++D G  AA  +  L PN +G ++ L+NI+
Sbjct: 573 HDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIF 632

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
           A  G+W +   +R  M SKG+ K PG +SV++ D V
Sbjct: 633 AAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSV 668



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/520 (21%), Positives = 225/520 (43%), Gaps = 71/520 (13%)

Query: 79  QMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDPDCYTYPCVL 137
            + D R +FD++  ++ V +  +I  YVN+    +AL ++  M +      D +     L
Sbjct: 64  HLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGL 123

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
           K C    + L G  +H   VK GL  ++F G+ L+ MY K G +  + +V ++MP+++ V
Sbjct: 124 KTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAV 183

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP----------- 246
           TW +++ G  + G  +  L     M   +++ D+   A  L +  ++             
Sbjct: 184 TWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQT 243

Query: 247 ------ENVLSVKEM----------------FLKLDNKNLVSWNVMIAVYANNSMPAEAV 284
                 EN      +                F K+   ++VSW  ++  Y         +
Sbjct: 244 LKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGL 303

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMY 344
             + +M    + PN  + ++V+  C + + L  G ++H +V        L + N+++ +Y
Sbjct: 304 QAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLY 363

Query: 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404
           +KCG L     VF  M+ +D+++W+++I+AY   G G +A    S+M   G  P+  A  
Sbjct: 364 SKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALA 423

Query: 405 SVLSACSHAGLLEEGR----YYFKIMTEQYKLV--------------------------P 434
           SVLS C    +LE+G+    +   +  EQ  +V                           
Sbjct: 424 SVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKD 483

Query: 435 RIEHFACLVDLLGRAGKVEEAYDL---IKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
            I  +  ++      G  +EA +L   I+++ + P+   +  ++ AC     +D+G    
Sbjct: 484 DIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYF 543

Query: 492 DHI---FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
           + +   +H+ P++  Y  ++ ++  +AGR  D + + + M
Sbjct: 544 NSMSKDYHITPSKEHYGCMI-DLLCRAGRLHDAETLIRSM 582



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 163/367 (44%), Gaps = 36/367 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           + +H Q +  +    N  +   L   Y  CG++    H F ++   +VV +  ++ +Y+ 
Sbjct: 237 RSIHTQTL-KKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQ 295

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                  L  +K M      P+ YT+  V+  C+    L  G Q+H  V+ VG    L  
Sbjct: 296 MGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSV 355

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N ++ +Y KCG L    +V   M  +D++TW++++A Y+Q G  +EA +    M S   
Sbjct: 356 ANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGP 415

Query: 228 KPDADTMASLLPSVTNTS--------PENVLSV-------------------------KE 254
           KP+   +AS+L    + +          +VLSV                          +
Sbjct: 416 KPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASK 475

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F+     +++SW  MI+ YA +    EA++L+  ++  G+ P++++   VL AC     
Sbjct: 476 IFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGM 535

Query: 315 LLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMI 372
           + LG      + +   + P+      ++D+  + G L +A T+   M  Q D V W++++
Sbjct: 536 VDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLL 595

Query: 373 SAYGMSG 379
            A  + G
Sbjct: 596 RACRIHG 602



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 102/435 (23%), Positives = 175/435 (40%), Gaps = 70/435 (16%)

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           +L   N  + +  K   LK+AR + + +P +D V+W ++++GY  +    EAL +  +M 
Sbjct: 48  DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMR 107

Query: 224 ---SLRIKP-----------------------DADTMASLLPSVTNTSP--ENVLSVKEM 255
               LRI P                              L+ SV   S   +  + + E+
Sbjct: 108 LQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEI 167

Query: 256 ------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                 F ++  +N V+W  +I            +  +  M    +E ++ + A  L A 
Sbjct: 168 GRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKAS 227

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
            D  AL  GR IH    +K    N  + N+L  MY KCG L      F +MR  DVVSWT
Sbjct: 228 ADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWT 287

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF------ 423
           ++++AY   G+    +  F +M  S + P+   F +V+S C++   L+ G          
Sbjct: 288 TIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCV 347

Query: 424 ----------KIMTEQYKL--------------VPRIEHFACLVDLLGRAGKVEEAYDLI 459
                      IMT   K                  I  ++ ++    + G  EEA++ +
Sbjct: 348 GFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYL 407

Query: 460 KQMPME---PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV-LLSNIYAKA 515
            +M  E   PNE    S+++ C   + ++ G     H+  +   Q+      L  +YAK 
Sbjct: 408 SRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKC 467

Query: 516 GRWGDVKRVRKFMNS 530
           G   +  ++  FM+S
Sbjct: 468 GSIAEASKI--FMDS 480



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 21  VLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQM 80
           V+  +YT  +  +C      +  +K  ++LHA ++    +++  S+   +M  Y  CG++
Sbjct: 314 VIPNEYTFSAVISC---CANFARLKWGEQLHAHVLCVGFVNA-LSVANSIMTLYSKCGEL 369

Query: 81  VDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC 140
                VF  +  ++++ ++ +I +Y       +A      M   G  P+ +    VL  C
Sbjct: 370 ASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVC 429

Query: 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWN 200
                L  G Q+H  V+ VGL+      + L+ MY KCG + EA ++  D    D+++W 
Sbjct: 430 GSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWT 489

Query: 201 SMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           +M++GYA++G   EA+++   ++ + ++PD+ T   +L + ++
Sbjct: 490 AMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSH 532


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/514 (33%), Positives = 279/514 (54%), Gaps = 37/514 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDP 128
           L+  Y  CG + + R +FD    KNV+ +N +I  Y  +  +  A  + + M +      
Sbjct: 340 LLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKV 398

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGCLKEARRV 187
           +  T   VL  C      L   +IH   ++ G +  +    N  VA Y KCG L  A  V
Sbjct: 399 NEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGV 458

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP- 246
              M SK V +WN+++ G+ QNG   +ALD+   M    ++PD  T+ASLL +       
Sbjct: 459 FCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSL 518

Query: 247 --------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
                                             +L  K  F  ++ KNLV WN MI  +
Sbjct: 519 SCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGF 578

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           + N  P +A+D++ QM    I P+ IS+   L AC  +SAL LG+++H +  +  L  + 
Sbjct: 579 SQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHS 638

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            +  +L+DMYAKCG + +++ +FD++  +  V+W  +I+ YG+ G G  A+ LF  M  +
Sbjct: 639 FVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNA 698

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           G  PDS+ F+++L+AC+HAGL+ EG  Y   M   + + P++EH+AC+VD+LGRAG++ E
Sbjct: 699 GFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNE 758

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A +L+ ++P +P+ RIW SL+++C  Y ++DIG   A+ +  L P+++  YVL+SN YA+
Sbjct: 759 ALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYAR 818

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
            G+W +V+++R+ M   G++K  G S +E+  +V
Sbjct: 819 LGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKV 852



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 142/503 (28%), Positives = 237/503 (47%), Gaps = 54/503 (10%)

Query: 12  STTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLM 71
           S +KP Q + L  Q           +  +Y +I+  +K+H  I  + H  ++  +  +L+
Sbjct: 88  SNSKPKQLIGLLLQ-----------LCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLV 136

Query: 72  RTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDC 130
             Y  C    D+  VF+    KN+  +N L+  Y+ N L+ DA+ V+  M S+  F PD 
Sbjct: 137 TMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDN 196

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
           +T PCV+KAC G   + +G  +H   +K  +  ++F GN L+AMYGK G ++ A +V + 
Sbjct: 197 FTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDK 256

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREM--ESLRIKPDADTMASLLPSVTNT---- 244
           MP +++V+WNS++    +NG F+E+  + + +      + PD  TM +++P         
Sbjct: 257 MPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVR 316

Query: 245 ----------------------------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                       S    L    +    + KN++SWN MI  Y+ 
Sbjct: 317 LGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDTNEKNVISWNSMIGGYSK 376

Query: 277 NSMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRYVERKK-LQPNL 334
           +     A +L  +M++   ++ N +++ +VLP C +    L  ++IH Y  R   +Q + 
Sbjct: 377 DRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDE 436

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + NA V  YAKCGSL  A  VF  M  + V SW ++I  +  +G    A+ L+  M  S
Sbjct: 437 LVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGS 496

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC--LVDLLGRAGKV 452
           GL PD     S+LSAC+    L  G+   +I     +    ++ F C  LV L  + GK+
Sbjct: 497 GLEPDLFTIASLLSACARLKSLSCGK---EIHGSMLRNGFELDEFICISLVSLYVQCGKI 553

Query: 453 EEAYDLIKQMPMEPNERIWGSLV 475
             A      M  E N   W +++
Sbjct: 554 LLAKLFFDNME-EKNLVCWNTMI 575



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/459 (26%), Positives = 227/459 (49%), Gaps = 52/459 (11%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S+  +G  L+  YG  G +     VFD++  +N+V +N ++ + + N ++ ++  ++K +
Sbjct: 229 SDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGL 288

Query: 122 --SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
                G  PD  T   V+  C+    + +G+  H   +K+GL   L   + L+ MY KCG
Sbjct: 289 LNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCG 348

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME-SLRIKPDADTMASLL 238
            L EAR VL D   K+V++WNSM+ GY+++  F  A ++ R+M+   ++K +  T+ ++L
Sbjct: 349 YLCEAR-VLFDTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVL 407

Query: 239 PSVTNTSPENVLSVKEM------------------------------------FLKLDNK 262
           P          L +KE+                                    F  +++K
Sbjct: 408 PVCEEEI--QFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESK 465

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH 322
            + SWN +I  +  N  P +A+DLYL M   G+EP+  ++AS+L AC  L +L  G++IH
Sbjct: 466 MVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIH 525

Query: 323 RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY 382
             + R   + +  +  +LV +Y +CG +  A+  FD M  +++V W +MI+ +  +   +
Sbjct: 526 GSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPF 585

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YYFKIMTEQYKLVPRIEH 438
           DA+ +F +ML S + PD I+ +  L ACS    L  G+    +  K    ++  V     
Sbjct: 586 DALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVT---- 641

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
              L+D+  + G +E++ ++  ++ ++  E  W  L+  
Sbjct: 642 -CSLIDMYAKCGCMEQSQNIFDRVHLK-GEVTWNVLITG 678



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 174/365 (47%), Gaps = 39/365 (10%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           LK++H   + +  + S+  +    +  Y  CG +     VF  + +K V  +N LI  +V
Sbjct: 419 LKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHV 478

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
            N     AL +Y  M   G +PD +T   +L AC+   SL  G +IH S+++ G + + F
Sbjct: 479 QNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEF 538

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
               LV++Y +CG +  A+   ++M  K++V WN+M+ G++QN    +ALD+  +M S +
Sbjct: 539 ICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSK 598

Query: 227 IKPDADTMASLLPSVTNTSPENV------LSVKE-------------------------- 254
           I PD  ++   L + +  S   +       +VK                           
Sbjct: 599 IWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQ 658

Query: 255 -MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
            +F ++  K  V+WNV+I  Y  +    +A++L+  M+  G  P++++  ++L AC    
Sbjct: 659 NIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACN--H 716

Query: 314 ALLLGRKIHRYVERKKL---QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWT 369
           A L+   +    + + L   +P L     +VDM  + G L EA  + +++  + D   W+
Sbjct: 717 AGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWS 776

Query: 370 SMISA 374
           S++S+
Sbjct: 777 SLLSS 781



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 179/371 (48%), Gaps = 25/371 (6%)

Query: 6   LLCRHFSTTKPVQALVLSTQYTLLSGDACN-------DILDKYPDIKTL---KKLHAQII 55
           L+  H     P +AL L   Y L+ G            +L     +K+L   K++H  ++
Sbjct: 473 LIGGHVQNGFPRKALDL---YLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSML 529

Query: 56  INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDAL 115
            N     +  I + L+  Y  CG+++  +  FD +  KN+V +N +I  +  N   +DAL
Sbjct: 530 RNG-FELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDAL 588

Query: 116 HVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMY 175
            ++  M      PD  +    L ACS  ++L +G ++HC  VK  L  + F    L+ MY
Sbjct: 589 DMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMY 648

Query: 176 GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA 235
            KCGC+++++ + + +  K  VTWN ++ GY  +G   +A+++ + M++   +PD+ T  
Sbjct: 649 AKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFI 708

Query: 236 SLLPSVTNTS--PENVLSVKEMFLKLDNK-NLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
           +LL +  +     E +  + +M      K  L  +  ++ +        EA++L  ++  
Sbjct: 709 ALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELP- 767

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV--DMYAKCGSL 350
              +P++   +S+L +C +   L +G K+   +   +L P+ + EN ++  + YA+ G  
Sbjct: 768 --DKPDSRIWSSLLSSCRNYRDLDIGEKVANKL--LELGPD-KAENYVLISNFYARLGKW 822

Query: 351 TEARTVFDQMR 361
            E R +  +M+
Sbjct: 823 DEVRKMRQRMK 833



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 26/220 (11%)

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH 322
           N +  N+   V ++NS P + + L LQ+                  CG+   + +GRKIH
Sbjct: 75  NFLQSNLNDVVSSSNSKPKQLIGLLLQL------------------CGEYKNIEIGRKIH 116

Query: 323 RYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
            ++      Q ++ L   LV MY+ C S  ++  VF+  R +++  W +++S Y  +   
Sbjct: 117 NFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLF 176

Query: 382 YDAVALFSKML-MSGLCPDSIAFVSVLSAC--SHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
            DAV +F +M+ ++   PD+     V+ AC   +   L E  + F + T   K++  +  
Sbjct: 177 RDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKT---KVLSDVFV 233

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
              L+ + G+ G VE A  +  +MP + N   W S++ AC
Sbjct: 234 GNALIAMYGKFGFVESAVKVFDKMP-QRNLVSWNSVMYAC 272


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 171/480 (35%), Positives = 256/480 (53%), Gaps = 46/480 (9%)

Query: 80  MVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA 139
           +V  R + D +T    V +N +I  YV   LY +A   ++ M   G   D YTY  ++ A
Sbjct: 233 LVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISA 292

Query: 140 CSGSNSLL----VGLQIHC----SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
           C   N  +     G Q+H     +VV+    + L   N L+  Y K   + EARRV + M
Sbjct: 293 CGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKM 352

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS 251
           P +D+++WN++++GY    R +EA  +  EM                       PE    
Sbjct: 353 PVRDIISWNAVLSGYVNAQRIEEANSIFSEM-----------------------PE---- 385

Query: 252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
                     +N+++W VMI+  A N    E + L+ QM+  G+EP   + A  + AC  
Sbjct: 386 ----------RNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSV 435

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           L +L  G++IH  V R      L   NAL+ MY++CG +  A +VF  M   D VSW +M
Sbjct: 436 LGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAM 495

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           I+A    G G  A+ LF +M+   + PD I F+++L+AC+HAGL++EGR+YF  M  +Y 
Sbjct: 496 IAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYG 555

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
           + P  +H+A L+DLL RAG   +A  +IK MP E    IW +L+A C ++ NM++GI AA
Sbjct: 556 ITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAA 615

Query: 492 DHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           D +  L P Q G Y++LSN+YA  G+W +V RVR  M  +G+KK PG S VE+ + V + 
Sbjct: 616 DRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVF 675



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 115/467 (24%), Positives = 200/467 (42%), Gaps = 104/467 (22%)

Query: 70  LMRTYGACGQMVDTRHVFDE--ITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD 127
           L+  Y + G +   + +F+   +T ++ V +N +I +Y +    + AL+++  M  +GF 
Sbjct: 77  LLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFL 136

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQ-IHCSVVKVGLDYNLFNGNGLVAMYGKCGC------ 180
           PD +T+  VL A S         Q +HC V+K+G        N L++ Y  C        
Sbjct: 137 PDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKS 196

Query: 181 ---LKEARRVLNDMPSKDVV--TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA 235
              +  AR+V ++ P   +   +W +M+AGY +N                          
Sbjct: 197 SQLMASARKVFDETPKNQIYEPSWTTMIAGYVRN-------------------------- 230

Query: 236 SLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
                      +++++ +E+   L     V+WN MI+ Y    +  EA D + +M   GI
Sbjct: 231 -----------DDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGI 279

Query: 296 EPNAISVASVLPACGD----LSALLLGRKIHRYVERKKLQPN----LRLENALVDMYAKC 347
           + +  +  S++ ACG     +     GR++H Y+ R  ++P+    L + NAL+  Y K 
Sbjct: 280 QEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKY 339

Query: 348 GSLTEARTVFDQMRCQDVVS-------------------------------WTSMISAYG 376
             + EAR VFD+M  +D++S                               WT MIS   
Sbjct: 340 DRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLA 399

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
            +G G + + LF++M   GL P   AF   ++ACS  G L+ G+       + +  V R+
Sbjct: 400 QNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQ-------QIHSQVIRL 452

Query: 437 EHFA------CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            H +       L+ +  R G VE A  +   MP   +   W +++AA
Sbjct: 453 GHDSGLSAGNALITMYSRCGVVESAESVFLTMPY-VDSVSWNAMIAA 498



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 132/301 (43%), Gaps = 61/301 (20%)

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
           S + ++   +H  ++  G   N F  N L+ +Y K   +  AR++ + +P  D+V   ++
Sbjct: 18  STTQIIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTL 77

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK 262
           ++ Y+ +G                          L   + N +P            L  +
Sbjct: 78  LSAYSSSGN-----------------------VKLAQQLFNATP------------LTIR 102

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH 322
           + VS+N MI  Y++ +    A++L++QM+ +G  P+  + +SVL A     +L+   + H
Sbjct: 103 DTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSAL----SLIADEERH 158

Query: 323 ---RYVERKKLQPNL--RLENALVDMYAKCGS---------LTEARTVFDQMRCQDVV-- 366
               + E  KL   L   + NAL+  Y  C S         +  AR VFD+     +   
Sbjct: 159 CQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEP 218

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLC-PDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           SWT+MI+ Y  +    D VA  ++ L+ GL  P  +A+ +++S     GL EE    F+ 
Sbjct: 219 SWTTMIAGYVRND---DLVA--ARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRR 273

Query: 426 M 426
           M
Sbjct: 274 M 274


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 166/508 (32%), Positives = 279/508 (54%), Gaps = 62/508 (12%)

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           +I+ Y ++ L   +L  +  +   G  PD + +P +L+A +      +   +H +V+++G
Sbjct: 47  IIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLG 106

Query: 161 LDYNLFNGNGLVAMYGKCG----------------------CLKEARRVLNDMPSKDVVT 198
             ++L+  N L+ MY K                         +   R++ + MP +DVV+
Sbjct: 107 FHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVS 166

Query: 199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM--- 255
           WN+++AG AQNG ++EAL++ +EM    ++PD+ T++S+LP  T  +  NV   KE+   
Sbjct: 167 WNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHA--NVTKGKEIHGY 224

Query: 256 --------------------------------FLKLDNKNLVSWNVMIAVYANNSMPAEA 283
                                           F  L N++ +SWN +IA    N    + 
Sbjct: 225 AIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQG 284

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
           +  + +M    ++P  +S +SV+PAC  L+AL LG+++H Y+ R     N  + ++L+DM
Sbjct: 285 LGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDM 344

Query: 344 YAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           YAKCG++  AR +F+++    +D+VSWT++I    M G   DAV+LF +ML+ G+ P  +
Sbjct: 345 YAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYV 404

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
           AF++VL+ACSHAGL++EG  YF  M   + + P +EH+A + DLLGRAG++EEAYD I  
Sbjct: 405 AFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISN 464

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
           M  EP   +W +L+AAC  + N+++     + I  + P   G +V++SNIY+ A RW D 
Sbjct: 465 MGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDA 524

Query: 522 KRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            ++R  M   G+KK P  S +E+ ++V 
Sbjct: 525 AKLRVRMRKTGLKKTPACSWIEVGNKVH 552



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 188/408 (46%), Gaps = 55/408 (13%)

Query: 7   LCRHFSTTKPVQALV--LSTQYTLLSGDACNDILDKY-PDIKTLKKLHAQIIINQHLHSN 63
           L +HF+  + + A V  L   + L + +A  ++  K+ P +  L +        +H H+N
Sbjct: 88  LFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQA----RHNHNN 143

Query: 64  PSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV 123
                     Y    ++   R +FD +  ++VV +N +I     N +Y +AL++ K M  
Sbjct: 144 K---------YSV--KIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGK 192

Query: 124 HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183
               PD +T   +L   +   ++  G +IH   ++ G D ++F G+ L+ MY KC  ++ 
Sbjct: 193 ENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVEL 252

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           +    + + ++D ++WNS++AG  QNGRFD+ L   R M   ++KP   + +S++P+  +
Sbjct: 253 SVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAH 312

Query: 244 TSPENV--------------------LSVKEMFLKLDN---------------KNLVSWN 268
            +  N+                     S+ +M+ K  N               +++VSW 
Sbjct: 313 LTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWT 372

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
            +I   A +    +AV L+ +M V G++P  ++  +VL AC     +  G K    ++R 
Sbjct: 373 AIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRD 432

Query: 329 -KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTSMISA 374
             + P L    A+ D+  + G L EA      M  +   S W+++++A
Sbjct: 433 FGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAA 480



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/321 (19%), Positives = 126/321 (39%), Gaps = 59/321 (18%)

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           ++W  +I  YA++ +   ++  +  +   GI P+     S+L A        L + +H  
Sbjct: 42  LAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAA 101

Query: 325 VERKKLQPNLRLENALVDMYAKCG----------------------SLTEARTVFDQMRC 362
           V R     +L   NAL++MY+K                         +   R +FD+M  
Sbjct: 102 VIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPV 161

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR-- 420
           +DVVSW ++I+    +G   +A+ +  +M    L PDS    S+L   +    + +G+  
Sbjct: 162 RDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEI 221

Query: 421 -------------YYFKIMTEQYKLVPRIEHFACLVDLLG---------------RAGKV 452
                        +    + + Y    ++E   C   LL                + G+ 
Sbjct: 222 HGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRF 281

Query: 453 EEAYDLIKQMPME---PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV-LL 508
           ++     ++M  E   P +  + S++ AC   + +++G     +I  L  + + +    L
Sbjct: 282 DQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSL 341

Query: 509 SNIYAKAGRWGDVKRVRKFMN 529
            ++YAK    G++K  R   N
Sbjct: 342 LDMYAKC---GNIKMARYIFN 359


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 198/589 (33%), Positives = 321/589 (54%), Gaps = 76/589 (12%)

Query: 23  STQYTLLSGDACNDILDKYPDIKTL-------KKLHAQIIINQ-HLHSNPSIGLKLMRTY 74
           STQ+T+      + IL K P+ KTL       K+LHA I+  +  LHS+    + ++  Y
Sbjct: 4   STQHTI------SKILRKTPN-KTLSVSTRQAKQLHAHIVKTKGTLHSD---NILVLSLY 53

Query: 75  GACGQMVDTRHVFDEITNKNVVF-FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
                +  + H+F+ + +      ++ +I+ Y ++ L + +   + +M      P+ + +
Sbjct: 54  SNLNLLQHSLHLFNSLPSPPPPLAWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVF 113

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK---------------- 177
           P +LKA +      +   +H   V++GLD +L+  N L+  Y K                
Sbjct: 114 PSLLKASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGE 173

Query: 178 --CGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPDADTM 234
               C+K   +V + MP +DVV+WN+++AG+AQNG + EALD+ REM ++ ++KPD+ T+
Sbjct: 174 SGIDCVK---KVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTL 230

Query: 235 ASLLP-----------------SVTNTSPENVL---SVKEMFLK-------------LDN 261
           +S+LP                 +V N    +V    S+ +M+ K             L  
Sbjct: 231 SSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPR 290

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           K+ +SWN +IA    N      +  + +M    ++P A+S +SV+PAC  L+AL LGR++
Sbjct: 291 KDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQL 350

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
           H  + R     N  + ++LVDMYAKCG++  AR VFD++  +D+V+WT++I    M G  
Sbjct: 351 HGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHA 410

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
            DAV+LF  ML  G+ P  +AF++VL+ACSHAGL++EG  YF  M   + + P +EH+A 
Sbjct: 411 LDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAA 470

Query: 442 LVDLLGRAGKVEEAYDLIKQMP-MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500
           + DLLGRAG++EEAYD I  M  ++P   +W  L+AAC  + ++++     D +  +   
Sbjct: 471 VADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSE 530

Query: 501 QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
             G YVL+SNIY+ A RW D  R+R  M  KG+KK P  S +E+ +QV 
Sbjct: 531 NMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVH 579



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 116/287 (40%), Gaps = 47/287 (16%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LH   I+      N  I   L+  Y  CG +   R+VFD I  +++V +  +I     
Sbjct: 348 RQLHG-CIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAM 406

Query: 108 NYLYYDALHVYKNMSVHGFDPDCY-TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
           +    DA+ +++NM   G  P CY  +  VL ACS           H  +V  G  Y   
Sbjct: 407 HGHALDAVSLFENMLEDGVRP-CYVAFMAVLTACS-----------HAGLVDEGWRY--- 451

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
             N +   +G    L+    V + +                + GR +EA D    M    
Sbjct: 452 -FNSMERDFGIAPGLEHYAAVADLL---------------GRAGRLEEAYDFISNMRG-- 493

Query: 227 IKPDADTMASLLPSV-TNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285
           ++P     + LL +   + S E    V +  L +D++N+ ++ +M  +Y+      +A  
Sbjct: 494 VQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAAR 553

Query: 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
           L + M   G++          PAC   S + +G ++H ++   K  P
Sbjct: 554 LRIHMRKKGLKKT--------PAC---SWIEVGNQVHTFMAGDKSHP 589


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 188/611 (30%), Positives = 315/611 (51%), Gaps = 76/611 (12%)

Query: 7   LCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSI 66
           L RH + + P Q    + +   +S      ++++   ++ LK+ H  +I      S+P  
Sbjct: 12  LPRHPNFSNPNQPTTNNERSRHIS------LIERCVSLRQLKQTHGHMIRTGTF-SDPYS 64

Query: 67  GLKL--MRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SV 123
             KL  M    +   +   R VFDEI   N   +N LIR+Y +      ++  + +M S 
Sbjct: 65  ASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSE 124

Query: 124 HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183
               P+ YT+P ++KA +  +SL +G  +H   VK  +  ++F  N L+  Y  CG L  
Sbjct: 125 SQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDS 184

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--- 240
           A +V   +  KDVV+WNSM+ G+ Q G  D+AL++ ++MES  +K    TM  +L +   
Sbjct: 185 ACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAK 244

Query: 241 ---------VTNTSPENVLSV---------------------KEMFLKLDNKNLVSW--- 267
                    V +   EN ++V                     K +F  ++ K+ V+W   
Sbjct: 245 IRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTM 304

Query: 268 ----------------------------NVMIAVYANNSMPAEAVDLYLQMEVH-GIEPN 298
                                       N +I+ Y  N  P EA+ ++ ++++   ++ N
Sbjct: 305 LDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLN 364

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
            I++ S L AC  + AL LGR IH Y+++  ++ N  + +AL+ MY+KCG L ++R VF+
Sbjct: 365 QITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFN 424

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
            +  +DV  W++MI    M G G +AV +F KM  + + P+ + F +V  ACSH GL++E
Sbjct: 425 SVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDE 484

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
               F  M   Y +VP  +H+AC+VD+LGR+G +E+A   I+ MP+ P+  +WG+L+ AC
Sbjct: 485 AESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGAC 544

Query: 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
            +++N+++  +A   +  L P   G +VLLSNIYAK G+W +V  +RK M   G+KK PG
Sbjct: 545 KIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPG 604

Query: 539 -ASVEMNDQVQ 548
            +S+E++  + 
Sbjct: 605 CSSIEIDGMIH 615


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 167/509 (32%), Positives = 286/509 (56%), Gaps = 34/509 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y   G + + + +FDE+  KN + +N ++ +YV N    DA  ++++ +    D +
Sbjct: 148 MLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKA----DWE 203

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             ++ C++      N L+    I   +     + +  + N +++ Y + G L EA+R+  
Sbjct: 204 LISWNCMMGGYVKRNRLVDARGIFDRMP----ERDEVSWNTMISGYAQNGELLEAQRLFE 259

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDV---------------------CREMESLRIK 228
           + P +DV TW +MV+GY QNG  DEA  V                     C+ M+  R  
Sbjct: 260 ESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQAREL 319

Query: 229 PDA---DTMASLLPSVTNTSPE-NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAV 284
            +A     ++S    +T  +   ++   +  F ++  ++ +SW  +IA YA +    EA+
Sbjct: 320 FEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEAL 379

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMY 344
            L+++M+  G   N  +  S L  C +++AL LG+++H  V +  L+    + NAL+ MY
Sbjct: 380 HLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMY 439

Query: 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404
            KCG++ +A  VF+ +  ++VVSW +MI+ Y   G G +A+ LF  M  +G+ PD +  V
Sbjct: 440 CKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMV 499

Query: 405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM 464
            VLSACSH GL+++G  YF  MT+ Y +    +H+ C++DLLGRAG++++A +L+K MP 
Sbjct: 500 GVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPF 559

Query: 465 EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV 524
           EP+   WG+L+ A  ++ N ++G  AA  IF + P+ SG YVLLSN+YA +GRWGDV R+
Sbjct: 560 EPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRM 619

Query: 525 RKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
           R  M  +G+KK+PG S VE+ +++    +
Sbjct: 620 RLRMRDRGVKKVPGYSWVEVQNKIHTFTV 648



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 173/366 (47%), Gaps = 37/366 (10%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           GQ      +F+ +  ++ + +N +I   ++N  +Y A  +++ M       D  ++  ++
Sbjct: 63  GQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTR----DLVSWNVMI 118

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
             C    +L     +   +     + ++ + N +++ Y + G +KEA+ + ++MP K+ +
Sbjct: 119 SGCVRYRNLRAARLLFDQMP----ERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSI 174

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
           +WN M+A Y QNGR ++A    R  ES   K D + ++             ++  + +F 
Sbjct: 175 SWNGMLAAYVQNGRIEDAR---RLFES---KADWELISWNCMMGGYVKRNRLVDARGIFD 228

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV---------------HGIEPNAISV 302
           ++  ++ VSWN MI+ YA N    EA  L+ +  V               +G+   A  V
Sbjct: 229 RMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRV 288

Query: 303 ASVLPACGDLS--ALLLG----RKIHRYVERKKLQP--NLRLENALVDMYAKCGSLTEAR 354
              +P    +S  A++ G    +++ +  E  +  P  N+   N ++  YA+ G + +AR
Sbjct: 289 FDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQAR 348

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
             FD+M  +D +SW ++I+ Y  SG G +A+ LF +M   G   +   F S LS C+   
Sbjct: 349 NFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIA 408

Query: 415 LLEEGR 420
            LE G+
Sbjct: 409 ALELGK 414



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 163/356 (45%), Gaps = 29/356 (8%)

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           D ++   N  +  + + G    A R+ N MP +  ++WN+M++G   N +F  A  +  +
Sbjct: 46  DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
           M      P  D ++  +         N+ + + +F ++  +++VSWN M++ YA N    
Sbjct: 106 M------PTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVK 159

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
           EA +++ +M       N+IS   +L A      +   R++       K    L   N ++
Sbjct: 160 EAKEIFDEMPC----KNSISWNGMLAAYVQNGRIEDARRLF----ESKADWELISWNCMM 211

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
             Y K   L +AR +FD+M  +D VSW +MIS Y  +G+  +A  LF +  +     D  
Sbjct: 212 GGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR----DVF 267

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
            + +++S     G+L+E R  F  M E+  +      +  ++    +  ++++A +L + 
Sbjct: 268 TWTAMVSGYVQNGMLDEARRVFDGMPEKNSV-----SWNAIIAGYVQCKRMDQARELFEA 322

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ-SGYYVLLSNIYAKAG 516
           MP + N   W +++       N DI    A + F   P + S  +  +   YA++G
Sbjct: 323 MPCQ-NVSSWNTMITGYA--QNGDIA--QARNFFDRMPQRDSISWAAIIAGYAQSG 373



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 11/199 (5%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H +++    L S   +G  L+  Y  CG + D   VF+ I  K VV +N +I  Y  
Sbjct: 414 KQVHGRVV-KAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYAR 472

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYNLF 166
           +    +AL ++++M   G  PD  T   VL ACS +  +  G +   S+ +  G+  N  
Sbjct: 473 HGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSK 532

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRF---DEALDVCREM 222
           +   ++ + G+ G L +A+ ++ +MP + D  TW +++     +G     ++A  +  EM
Sbjct: 533 HYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM 592

Query: 223 ESLRIKPDADTMASLLPSV 241
           E     PD   M  LL ++
Sbjct: 593 E-----PDNSGMYVLLSNL 606


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 165/512 (32%), Positives = 272/512 (53%), Gaps = 34/512 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G++     VF+++  +NVV +  +I   V+     + L  +  M       D
Sbjct: 165 LIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYD 224

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +T+   LKA + S+ L  G  IH   +K G D + F  N L  MY KCG      R+  
Sbjct: 225 SHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFE 284

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE-- 247
            M   DVV+W ++++ Y Q G  + A++  + M    + P+  T A+++ S  N +    
Sbjct: 285 KMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKW 344

Query: 248 --------------NVLSVKE-----------------MFLKLDNKNLVSWNVMIAVYAN 276
                         N LSV                   +F  +  K+++SW+ +I+VY+ 
Sbjct: 345 GEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQ 404

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
                EA D    M   G +PN  +++SVL  CG ++ L  G+++H ++    +     +
Sbjct: 405 GGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMV 464

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            +A++ MY+KCGS+ EA  +F+ M+  D++SWT+MI+ Y   G   +A+ LF K+   GL
Sbjct: 465 HSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGL 524

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PD + F+ VL+AC+HAG+++ G YYF +MT  Y++ P  EH+ CL+DLL RAG++ EA 
Sbjct: 525 KPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAE 584

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
            +I+ MP   ++ +W +L+ AC ++ ++D G   A+ +  L PN +G ++ L+NIYA  G
Sbjct: 585 HIIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQLLQLDPNSAGTHITLANIYAAKG 644

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           RW +   +RK M SKG+ K  G S V +NDQ+
Sbjct: 645 RWKEAAHIRKLMKSKGVIKERGWSWVNVNDQL 676



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 135/495 (27%), Positives = 234/495 (47%), Gaps = 67/495 (13%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCV 136
           GQ+   R++FD++T+++ + +  LI  YVN    Y+AL ++ NM VH G   D +     
Sbjct: 71  GQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVA 130

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDV 196
           LKAC+   ++  G  +H   VK GL +++F  + L+ MY K G +++  RV   M +++V
Sbjct: 131 LKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNV 190

Query: 197 VTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS----------- 245
           V+W +++AG    G   E L    EM   ++  D+ T A  L +  ++S           
Sbjct: 191 VSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQ 250

Query: 246 -----------PENVLS-----------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
                        N L+           V  +F K+   ++VSW  +I+ Y        A
Sbjct: 251 TIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHA 310

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
           V+ + +M    + PN  + A+V+ +C +L+A   G +IH +V R  L   L + N+++ +
Sbjct: 311 VEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITL 370

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
           Y+KCG L  A  VF  +  +D++SW+++IS Y   G   +A    S M   G  P+  A 
Sbjct: 371 YSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFAL 430

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA----CLVDLLGRAGKVEEAYDLI 459
            SVLS C    LLE+G+         + L   I+H A     ++ +  + G V+EA  + 
Sbjct: 431 SSVLSVCGSMALLEQGK-----QVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIF 485

Query: 460 KQMPMEPNERI-WGSLV----------AACCLYSNMDIGILAADHIFHL----APNQSG- 503
             M +  N+ I W +++           A  L+  +    L  D++  +    A N +G 
Sbjct: 486 NGMKI--NDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGM 543

Query: 504 ------YYVLLSNIY 512
                 Y++L++N+Y
Sbjct: 544 VDLGFYYFMLMTNVY 558



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 160/362 (44%), Gaps = 36/362 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +H Q I  Q    +  +   L   Y  CG+      +F+++   +VV +  LI +YV 
Sbjct: 245 KAIHTQTI-KQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQ 303

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                 A+  +K M      P+ YT+  V+ +C+   +   G QIH  V+++GL   L  
Sbjct: 304 MGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSV 363

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N ++ +Y KCG LK A  V + +  KD+++W+++++ Y+Q G   EA D    M     
Sbjct: 364 ANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGP 423

Query: 228 KPDADTMASLLP------------------------------SVTNTSPENVLSVKE--- 254
           KP+   ++S+L                               S   +      SV+E   
Sbjct: 424 KPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASK 483

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F  +   +++SW  MI  YA +    EA++L+ ++   G++P+ +    VL AC     
Sbjct: 484 IFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGM 543

Query: 315 LLLGRKIHRYVER-KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMI 372
           + LG      +    ++ P+      L+D+  + G L+EA  +   M    D V W++++
Sbjct: 544 VDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLL 603

Query: 373 SA 374
            A
Sbjct: 604 RA 605



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 134/274 (48%), Gaps = 10/274 (3%)

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVASVLPACGD 311
           + MF K+ +++ +SW  +IA Y N S   EA+ L+  M VH G + +   ++  L AC  
Sbjct: 77  RYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACAL 136

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
              +  G  +H +  +  L  ++ + +AL+DMY K G + +   VF++M  ++VVSWT++
Sbjct: 137 GVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAI 196

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           I+    +G   + +  FS+M  S +  DS  F   L A + + LL  G+    I T+  K
Sbjct: 197 IAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGK---AIHTQTIK 253

Query: 432 LVPRIEHFA--CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
                  F    L  +  + GK +    L ++M M P+   W +L++        +  + 
Sbjct: 254 QGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRM-PDVVSWTTLISTYVQMGEEEHAVE 312

Query: 490 AADHI--FHLAPNQSGYYVLLSN-IYAKAGRWGD 520
           A   +   +++PN+  +  ++S+     A +WG+
Sbjct: 313 AFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGE 346



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 13/146 (8%)

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS-GL 396
           N+ +    K G L +AR +FD+M  +D +SWT++I+ Y  +   Y+A+ LFS M +  G 
Sbjct: 61  NSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGP 120

Query: 397 CPDSIAFVSVLSACSHA-----GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
             D       L AC+       G L  G   F + +    L+  +   + L+D+  + GK
Sbjct: 121 QRDQFMISVALKACALGVNICFGELLHG---FSVKS---GLIHSVFVSSALIDMYMKVGK 174

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAA 477
           +E+   + ++M M  N   W +++A 
Sbjct: 175 IEQGCRVFEKM-MTRNVVSWTAIIAG 199


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 192/601 (31%), Positives = 302/601 (50%), Gaps = 98/601 (16%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC ++    P  +     H  I  N    SN  I   L+  Y  CG + +   +FDEIT 
Sbjct: 126 ACGEL----PSYRCGSAFHGLICCNG-FESNVFICNALVAMYSRCGSLEEASMIFDEITQ 180

Query: 93  K---NVVFFNVLIRSYVNNYLYYDALHVYKNMS--VH----GFDPDCYTYPCVLKACSGS 143
           +   +V+ +N ++ ++V +   + AL ++  M+  VH        D  +   +L AC   
Sbjct: 181 RGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSL 240

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
            ++    ++H + ++ G   ++F GN L+  Y KCG ++ A +V N M  KDVV+WN+MV
Sbjct: 241 KAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMV 300

Query: 204 AGYA-----------------------------------QNGRFDEALDVCREMESLRIK 228
           AGY+                                   Q G   EAL+V R+M      
Sbjct: 301 AGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSL 360

Query: 229 PDADTMASLLPSVTNTSPE------NVLSVKEMFLKLDN--------------------- 261
           P+  T+ S+L +  +          +  S+K   L LDN                     
Sbjct: 361 PNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSK 420

Query: 262 ------------------KNLVSWNVMIAVYANNSMPAEAVDLYLQM--EVHGIEPNAIS 301
                             +N+V+W VMI  +A      +A+ L+++M  E +G+ PNA +
Sbjct: 421 CRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYT 480

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPN--LRLENALVDMYAKCGSLTEARTVFDQ 359
           ++ +L AC  L+A+ +G++IH YV R     +    + N L++MY+KCG +  AR VFD 
Sbjct: 481 ISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDS 540

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
           M  +  +SWTSM++ YGM G+G +A+ +F KM  +G  PD I F+ VL ACSH G++++G
Sbjct: 541 MSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQG 600

Query: 420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
             YF  M+  Y L PR EH+A  +DLL R G++++A+  +K MPMEP   +W +L++AC 
Sbjct: 601 LSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACR 660

Query: 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA 539
           ++SN+++   A + +  +     G Y L+SNIYA AGRW DV R+R  M   GIKK PG 
Sbjct: 661 VHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGC 720

Query: 540 S 540
           S
Sbjct: 721 S 721



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/490 (25%), Positives = 220/490 (44%), Gaps = 92/490 (18%)

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
           S+G  ++ +Y ACG       V + +T    V++N+LIR ++       A++V   M   
Sbjct: 52  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRA 111

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G   D +T P VLKAC    S   G   H  +   G + N+F  N LVAMY +CG L+EA
Sbjct: 112 GTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 171

Query: 185 RRVLNDMPSK---DVVTWNSMVAGYAQNGRFDEALDVCREM------ESLRIKPDADTMA 235
             + +++  +   DV++WNS+V+ + ++     ALD+  +M      +    + D  ++ 
Sbjct: 172 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 231

Query: 236 SLLP-----------------SVTNTSPENVL----------------SVKEMFLKLDNK 262
           ++LP                 ++ N +  +V                 +  ++F  ++ K
Sbjct: 232 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 291

Query: 263 NLVSWNVMIAVYANN----------------SMP-------------------AEAVDLY 287
           ++VSWN M+A Y+ +                ++P                    EA++++
Sbjct: 292 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 351

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL----------QPNLRLE 337
            QM   G  PN +++ SVL AC  L A   G +IH Y  +  L            +L + 
Sbjct: 352 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVY 411

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQD--VVSWTSMISAYGMSGQGYDAVALFSKMLMS- 394
           NAL+DMY+KC S   AR++FD +  ++  VV+WT MI  +   G   DA+ LF +M+   
Sbjct: 412 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 471

Query: 395 -GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA-CLVDLLGRAGKV 452
            G+ P++     +L AC+H   +  G+     +   ++        A CL+++  + G V
Sbjct: 472 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDV 531

Query: 453 EEAYDLIKQM 462
           + A  +   M
Sbjct: 532 DTARHVFDSM 541


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 166/516 (32%), Positives = 269/516 (52%), Gaps = 34/516 (6%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y   G++  +  VFDE+  +N V +  +I   V        L  +  M    
Sbjct: 153 VGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSK 212

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            + D Y Y   LKA + S +L  G  IH   +K G D N F  N L  MY KCG L    
Sbjct: 213 VEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGL 272

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN-- 243
                M + DVV+W ++V  Y Q G+ D  L   + M +  + P+  T ++++    N  
Sbjct: 273 HTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFA 332

Query: 244 -------------------------------TSPENVLSVKEMFLKLDNKNLVSWNVMIA 272
                                          +    + SV ++F  +  +++++W+ +IA
Sbjct: 333 RLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIA 392

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y+      EA +   +M   G +PN  ++ASVL  CG ++ L  G+++H +V    L+ 
Sbjct: 393 AYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQ 452

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
              + +AL+ MYAKCGS+ EA  +F      D++SWT+MIS Y   G   +A+ LF  + 
Sbjct: 453 TSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQ 512

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
             GL PDS+ F+ VL+ACSHAG+++ G YYF  M++ Y + P  EH+ C++DLL RAG++
Sbjct: 513 KVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRL 572

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
            +A  LI+ MP++ ++ +W +L+ AC ++ ++D G  AA  +  L PN +G ++ L+NI+
Sbjct: 573 HDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIF 632

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
           A  G+W +   +R  M SKG+ K PG +SV++ D V
Sbjct: 633 AAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSV 668



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/520 (21%), Positives = 225/520 (43%), Gaps = 71/520 (13%)

Query: 79  QMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDPDCYTYPCVL 137
            + D R +FD++  ++ V +  +I  YVN+    +AL ++  M +      D +     L
Sbjct: 64  HLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGL 123

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
           K C    + L G  +H   VK GL  ++F G+ L+ MY K G +  + +V ++MP+++ V
Sbjct: 124 KTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAV 183

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP----------- 246
           TW +++ G  + G  +  L     M   +++ D+   A  L +  ++             
Sbjct: 184 TWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQT 243

Query: 247 ------ENVLSVKEM----------------FLKLDNKNLVSWNVMIAVYANNSMPAEAV 284
                 EN      +                F K+   ++VSW  ++  Y         +
Sbjct: 244 LKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGL 303

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMY 344
             + +M    + PN  + ++V+  C + + L  G ++H +V        L + N+++ +Y
Sbjct: 304 QAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLY 363

Query: 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404
           +KCG L     VF  M+ +D+++W+++I+AY   G G +A    S+M   G  P+  A  
Sbjct: 364 SKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALA 423

Query: 405 SVLSACSHAGLLEEGR----YYFKIMTEQYKLV--------------------------P 434
           SVLS C    +LE+G+    +   +  EQ  +V                           
Sbjct: 424 SVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKD 483

Query: 435 RIEHFACLVDLLGRAGKVEEAYDL---IKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
            I  +  ++      G  +EA +L   I+++ + P+   +  ++ AC     +D+G    
Sbjct: 484 DIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYF 543

Query: 492 DHI---FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
           + +   +H+ P++  Y  ++ ++  +AGR  D + + + M
Sbjct: 544 NSMSKDYHITPSKEHYGCMI-DLLCRAGRLHDAETLIRSM 582



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 163/367 (44%), Gaps = 36/367 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           + +H Q +  +    N  +   L   Y  CG++    H F ++   +VV +  ++ +Y+ 
Sbjct: 237 RSIHTQTL-KKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQ 295

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                  L  +K M      P+ YT+  V+  C+    L  G Q+H  V+ VG    L  
Sbjct: 296 MGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSV 355

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N ++ +Y KCG L    +V   M  +D++TW++++A Y+Q G  +EA +    M S   
Sbjct: 356 ANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGP 415

Query: 228 KPDADTMASLLPSVTNTS--------PENVLSV-------------------------KE 254
           KP+   +AS+L    + +          +VLSV                          +
Sbjct: 416 KPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASK 475

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F+     +++SW  MI+ YA +    EA++L+  ++  G+ P++++   VL AC     
Sbjct: 476 IFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGM 535

Query: 315 LLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMI 372
           + LG      + +   + P+      ++D+  + G L +A T+   M  Q D V W++++
Sbjct: 536 VDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLL 595

Query: 373 SAYGMSG 379
            A  + G
Sbjct: 596 RACRIHG 602



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 102/435 (23%), Positives = 177/435 (40%), Gaps = 70/435 (16%)

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           +L   N  + +  K   LK+AR + + +P +D V+W ++++GY  +    EAL +  +M 
Sbjct: 48  DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMR 107

Query: 224 ---SLRIKPDADTMA-----------------------SLLPSVTNTSP--ENVLSVKEM 255
               LRI P   ++                         L+ SV   S   +  + + E+
Sbjct: 108 LQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEI 167

Query: 256 ------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                 F ++  +N V+W  +I            +  +  M    +E ++ + A  L A 
Sbjct: 168 GRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKAS 227

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
            D  AL  GR IH    +K    N  + N+L  MY KCG L      F +MR  DVVSWT
Sbjct: 228 ADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWT 287

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF------ 423
           ++++AY   G+    +  F +M  S + P+   F +V+S C++   L+ G          
Sbjct: 288 TIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCV 347

Query: 424 ----------KIMTEQYKL--------------VPRIEHFACLVDLLGRAGKVEEAYDLI 459
                      IMT   K                  I  ++ ++    + G  EEA++ +
Sbjct: 348 GFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYL 407

Query: 460 KQMPME---PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV-LLSNIYAKA 515
            +M  E   PNE    S+++ C   + ++ G     H+  +   Q+      L  +YAK 
Sbjct: 408 SRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKC 467

Query: 516 GRWGDVKRVRKFMNS 530
           G   +  ++  FM+S
Sbjct: 468 GSIAEASKI--FMDS 480



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 21  VLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQM 80
           V+  +YT  +  +C      +  +K  ++LHA ++    +++  S+   +M  Y  CG++
Sbjct: 314 VIPNEYTFSAVISC---CANFARLKWGEQLHAHVLCVGFVNA-LSVANSIMTLYSKCGEL 369

Query: 81  VDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC 140
                VF  +  ++++ ++ +I +Y       +A      M   G  P+ +    VL  C
Sbjct: 370 ASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVC 429

Query: 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWN 200
                L  G Q+H  V+ VGL+      + L+ MY KCG + EA ++  D    D+++W 
Sbjct: 430 GSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWT 489

Query: 201 SMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           +M++GYA++G   EA+++   ++ + ++PD+ T   +L + ++
Sbjct: 490 AMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSH 532


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 174/513 (33%), Positives = 282/513 (54%), Gaps = 34/513 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  C  +      F     +N+V +NV++ +Y       D+  +++ M + G  P+
Sbjct: 403 LLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPN 462

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +TYP +L+ C+   +L +G QIH  V+K G   N++  + L+ MY K G L  A R+L 
Sbjct: 463 QFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILR 522

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT------- 242
            +P  DVV+W +M+AGY Q+  F EAL +  EME   I+ D    AS + +         
Sbjct: 523 RLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQ 582

Query: 243 ---------------NTSPENVL--------SVKEMFL---KLDNKNLVSWNVMIAVYAN 276
                          + S  N L         ++E +L   K+ +KN +SWN +++  A 
Sbjct: 583 GQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQ 642

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           +    EA+ ++++M     E N  +  S + A   L+ +  G++IH  V +        +
Sbjct: 643 SGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREV 702

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            N+L+ +YAK GS+++A   F+ M  ++V+SW +MI+ Y   G G +A+ LF +M + G+
Sbjct: 703 SNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGI 762

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P+ + FV VLSACSH GL++EG  YF+ M + + LVP+ EH+ C+VDLLGRAG+++ A 
Sbjct: 763 MPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAM 822

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           + IK+MP+  +  IW +L++AC ++ N++IG  AA H+  L P  S  YVL+SNIYA + 
Sbjct: 823 EYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSR 882

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           +W      RK M   G+KK PG S +E+ + V 
Sbjct: 883 QWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVH 915



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 131/451 (29%), Positives = 220/451 (48%), Gaps = 39/451 (8%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S+P +   L+  Y   G +   + VF+ I  K++V +  +I     N L  +A+ ++ +M
Sbjct: 193 SSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDM 252

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
                 P  Y    VL A +      +G Q+HC V+K G     +  NGLVA+Y +   L
Sbjct: 253 HASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKL 312

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
             A R+ + M S+D V++NS+++G  Q G  D AL++  +M+   +KPD  T+ASLL + 
Sbjct: 313 ISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSAC 372

Query: 242 TNTSP---------------------------------ENVLSVKEMFLKLDNKNLVSWN 268
            +                                     +V +  + FL  + +N+V WN
Sbjct: 373 ASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWN 432

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
           VM+  Y      +++ +++ QM++ G+ PN  +  S+L  C  L AL LG +IH +V + 
Sbjct: 433 VMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKT 492

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
             Q N+ + + L+DMYAK G L  A  +  ++   DVVSWT+MI+ Y       +A+ LF
Sbjct: 493 GFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLF 552

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK--LVPRIEHFACLVDLL 446
            +M   G+  D+I F S +SAC+    L +G+   +I  + Y       +     L+ L 
Sbjct: 553 EEMEYRGIQFDNIGFASAISACAGIRALRQGQ---QIHAQSYAAGFGADLSINNALISLY 609

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            R G+++EAY   +++  + N   W SLV+ 
Sbjct: 610 ARCGRIQEAYLAFEKIG-DKNNISWNSLVSG 639



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 213/428 (49%), Gaps = 40/428 (9%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VFDE +N++V  +N +I  +V     +    +++ M   G  P+ YT+  VLKAC G + 
Sbjct: 115 VFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDI 174

Query: 146 LLVGL-QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
               + Q+H      G D +    N L+ +Y K G ++ A++V N +  KD+VTW +M++
Sbjct: 175 AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMIS 234

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN--------------------- 243
           G +QNG  +EA+ +  +M +  I P    ++S+L + T                      
Sbjct: 235 GLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHS 294

Query: 244 ------------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
                       +    ++S + +F  +++++ VS+N +I+          A++L+ +M+
Sbjct: 295 ETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQ 354

Query: 292 VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351
              ++P+ I+VAS+L AC  + AL  G ++H +  +  +  ++ LE +L+D+Y+KC  + 
Sbjct: 355 RDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVE 414

Query: 352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
            A   F     +++V W  M+ AYG      D+  +F +M M G+ P+   + S+L  C+
Sbjct: 415 TAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCT 474

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFAC--LVDLLGRAGKVEEAYDLIKQMPMEPNER 469
             G L  G    +I T   K   ++  + C  L+D+  + G++  A  +++++P E +  
Sbjct: 475 SLGALYLGE---QIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVV 530

Query: 470 IWGSLVAA 477
            W +++A 
Sbjct: 531 SWTAMIAG 538



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 115/476 (24%), Positives = 219/476 (46%), Gaps = 39/476 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LH  ++I    HS   +   L+  Y    +++    +F  + +++ V +N LI   V 
Sbjct: 281 EQLHC-LVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQ 339

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                 AL ++  M      PDC T   +L AC+   +L  G+Q+H   +K G+  ++  
Sbjct: 340 QGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIIL 399

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L+ +Y KC  ++ A +      ++++V WN M+  Y Q     ++ ++ R+M+   +
Sbjct: 400 EGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGM 459

Query: 228 KPDADTMASLLPSVTNTSP----ENVLS--VKEMF------------------------- 256
            P+  T  S+L + T+       E + +  +K  F                         
Sbjct: 460 IPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALR 519

Query: 257 --LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
              +L   ++VSW  MIA Y  + M +EA+ L+ +ME  GI+ + I  AS + AC  + A
Sbjct: 520 ILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRA 579

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           L  G++IH          +L + NAL+ +YA+CG + EA   F+++  ++ +SW S++S 
Sbjct: 580 LRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSG 639

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
              SG   +A+ +F +ML +    +   + S +SA +    +++G+    ++ +      
Sbjct: 640 LAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSE 699

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
           R E    L+ L  ++G + +A+     M  E N   W +++     YS    G+ A
Sbjct: 700 R-EVSNSLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITG---YSQHGCGMEA 750



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 117/473 (24%), Positives = 200/473 (42%), Gaps = 84/473 (17%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M   G   +   Y  +L+ C  S SL   +++HC + K G D      + LV  Y + G 
Sbjct: 49  MEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGD 108

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGY-AQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
              A +V ++  ++ V +WN M+  + AQ   F +   + R M +  I P+  T A +L 
Sbjct: 109 QHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNF-QVFCLFRRMLAEGITPNGYTFAGVLK 167

Query: 240 SVT---------------------NTSP--ENVL-----------SVKEMFLKLDNKNLV 265
           +                       ++SP   N+L           S K++F  +  K++V
Sbjct: 168 ACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIV 227

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           +W  MI+  + N +  EA+ L+  M    I P    ++SVL A   +    LG ++H  V
Sbjct: 228 TWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLV 287

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD-- 383
            +        + N LV +Y++   L  A  +F  M  +D VS+ S+IS  G+  QG+   
Sbjct: 288 IKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLIS--GLVQQGFSDR 345

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG------------------------ 419
           A+ LF+KM    L PD I   S+LSAC+  G L +G                        
Sbjct: 346 ALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLD 405

Query: 420 ----------RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME---P 466
                      + F + TE   +V     +  ++   G+   + +++++ +QM ME   P
Sbjct: 406 LYSKCADVETAHKFFLXTETENIVL----WNVMLVAYGQLDNLSDSFEIFRQMQMEGMIP 461

Query: 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV--LLSNIYAKAGR 517
           N+  + S++  C     + +G     H+      Q   YV  +L ++YAK G+
Sbjct: 462 NQFTYPSILRTCTSLGALYLGEQIHTHVIKTGF-QLNVYVCSVLIDMYAKYGQ 513



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 106/200 (53%), Gaps = 1/200 (0%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++  +++HAQ        ++ SI   L+  Y  CG++ +    F++I +KN + +N L+ 
Sbjct: 580 LRQGQQIHAQSYA-AGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVS 638

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
               +  + +AL V+  M     + + +TY   + A +   ++  G QIH  V+K G D 
Sbjct: 639 GLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDS 698

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
                N L+++Y K G + +A R  NDM  ++V++WN+M+ GY+Q+G   EAL +  EM+
Sbjct: 699 EREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMK 758

Query: 224 SLRIKPDADTMASLLPSVTN 243
              I P+  T   +L + ++
Sbjct: 759 VCGIMPNHVTFVGVLSACSH 778


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 169/458 (36%), Positives = 263/458 (57%), Gaps = 36/458 (7%)

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGCLKEARR 186
           PD   Y  +LK C+    +  G  +H  +V    LD +L   N +V MY KCGCL +ARR
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARR 144

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP---SVTN 243
           + ++MP+KD+VTW +++AG++QN R  +AL +  +M  L ++P+  T++SLL    S   
Sbjct: 145 MFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHG 204

Query: 244 TSPENVL------------------------------SVKEMFLKLDNKNLVSWNVMIAV 273
             P   L                              + +  F  +  K+ VSWN +I+ 
Sbjct: 205 LDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISG 264

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           +A       A+ L  +M+    +P   + +SV  AC  + AL  G+ +H ++ +  L+  
Sbjct: 265 HARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLI 324

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             + N L+DMYAK GS+ +A+ VFD++   DVVSW +M++     G G + +  F +ML 
Sbjct: 325 AFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLR 384

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
            G+ P+ I+F+ VL+ACSH+GLL+EG YYF++M ++YK+ P + H+   VDLLGR G ++
Sbjct: 385 IGIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLD 443

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
            A   I++MP+EP   +WG+L+ AC ++ NM++G+ AA+  F L P+ SG  +LLSNIYA
Sbjct: 444 RAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYA 503

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            AGRW DV +VRK M   G+KK P  S VE+ + V + 
Sbjct: 504 SAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLF 541



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 169/362 (46%), Gaps = 34/362 (9%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           +HA ++ +  L ++  +   ++  Y  CG + D R +FDE+  K++V +  LI  +  N 
Sbjct: 109 VHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNN 168

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
              DAL ++  M   G  P+ +T   +LKA    + L  G Q+H   +K G   +++ G+
Sbjct: 169 RPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGS 228

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            LV MY +CG +  A+   + MP+K  V+WN++++G+A+ G  + AL +  +M+    +P
Sbjct: 229 ALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQP 288

Query: 230 DADTMAS---------------------------LLPSVTNT------SPENVLSVKEMF 256
              T +S                           L+  + NT         ++   K +F
Sbjct: 289 THFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVF 348

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
            +L   ++VSWN M+   A + +  E +D + QM   GIEPN IS   VL AC     L 
Sbjct: 349 DRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLD 408

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTSMISAY 375
            G      +++ K++P++      VD+  + G L  A     +M  +   + W +++ A 
Sbjct: 409 EGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGAC 468

Query: 376 GM 377
            M
Sbjct: 469 RM 470


>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
          Length = 580

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 189/562 (33%), Positives = 301/562 (53%), Gaps = 68/562 (12%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLM---RTYGAC-GQMVDTRHVFDEITNKNVVFFN 99
           +K  K++HA I+I+   H  P +  +++     Y A   Q V +  V     + +   + 
Sbjct: 17  VKQAKQVHALILIHGLSHLEPILARQILISASNYSATVAQYVHS--VLHHSKSPDSFSWA 74

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
             IR    +  + +A  +Y  M   G  P  +     LKAC+     + G+ IH  V K 
Sbjct: 75  CAIRFSTQHGQFKEAFALYVQMQRWGLCPTTFALSSALKACARIAYRMGGISIHGQVQKF 134

Query: 160 GL----------------------------------DYNLFNGNGLVAMYGKCGCLKEAR 185
           G                                   + N+ + N ++A Y K G L  A+
Sbjct: 135 GFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQ 194

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP------------DADT 233
           RV +++P KDV++WNSM++GYA+ G  ++A  + ++M                   D D+
Sbjct: 195 RVFDEIPQKDVISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDS 254

Query: 234 MASL---LPSVTNTSP----------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
             S    +P   N S            +V S  E+F ++  K+L+ +N MIA YA NS P
Sbjct: 255 ARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRP 314

Query: 281 AEAVDLYLQM--EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
            EA++L+  M      ++P+ +++ASV+ AC  L  L  G  I  Y+ R  ++ +  L  
Sbjct: 315 NEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLAT 374

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           AL+D+YAKCGS+ +A  +F  +R +D+V++T+MI   G++G+  DA+ LF +M+ + + P
Sbjct: 375 ALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFP 434

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           +SI F+ +L+A +HAGL+EEG   F  M ++Y LVP ++H+  +VDL GRAG+++EA +L
Sbjct: 435 NSITFIGLLTAYNHAGLVEEGYRCFTSM-KKYNLVPSVDHYGIMVDLFGRAGRLQEALEL 493

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
           IK MPM+P+  +WG+L+ AC L++N++ G +AA H F L P+ +GY  LLSNIYA   RW
Sbjct: 494 IKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGERW 553

Query: 519 GDVKRVRKFMNSKGIKKMPGAS 540
            DVKR+RK    KG  K+PG S
Sbjct: 554 DDVKRLRKVTKEKGFSKIPGCS 575


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 168/487 (34%), Positives = 285/487 (58%), Gaps = 18/487 (3%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y    ++ D   +F+E+ NKNVV +N +I  Y  N     A+++++ M     + +  ++
Sbjct: 125 YIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMP----ERNVVSW 180

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             V+   +    +    ++   +     + ++ +   ++A   K G + EAR + + MP 
Sbjct: 181 NTVMSMLAQCGRIEEARRLFDRMP----ERDVISWTAMIAGLSKNGRIDEARLLFDRMPE 236

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK 253
           ++VV+WN+M+ GYAQN R DEALD+   M   R  P  +TM + L  + N    ++   +
Sbjct: 237 RNVVSWNAMITGYAQNLRLDEALDLFERMPE-RDLPSWNTMITGL--IQNG---DLRRAR 290

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDL 312
           ++F ++  KN++SW  MI          EA+ ++ +M   +G +PN  +  SVL AC +L
Sbjct: 291 KLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNL 350

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ-MRCQ-DVVSWTS 370
           + L  G+++H+ + +   Q +  + +AL++MY+KCG L  AR +FD  M  Q D+VSW  
Sbjct: 351 AGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNG 410

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           +I+AY   G G +A+  F +M  SG  PD + +V +LSACSHAGL+EEG  YF  + +  
Sbjct: 411 IIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDR 470

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            ++ R +H+ACLVDL GRAG+++EA+  I+++  +P+ R+WG+L+A C +++N+ IG  A
Sbjct: 471 SILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQA 530

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQI 549
           A  +  + P  +G Y+LLSNIYA  G+W +  RVR  M  KG+KK PG S +E+ ++V +
Sbjct: 531 AKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVHV 590

Query: 550 IALPLRS 556
             +  +S
Sbjct: 591 FVVGDKS 597



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 178/380 (46%), Gaps = 76/380 (20%)

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
           +D N+   N ++    K G + EARR+ ++M   DV+TW ++++GY + G  +EA    R
Sbjct: 48  VDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEAR---R 104

Query: 221 EMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
             + +  K +  T  +++     ++   +   +++F ++ NKN+VSWN MI  YA N   
Sbjct: 105 LFDRVDAKKNVVTWTAMVGGYIRSN--KISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRI 162

Query: 281 AEAVDLYLQMEVHGIEPNAIS---VASVLPACGDL------------------SALLLGR 319
             A+ L+ +M     E N +S   V S+L  CG +                  +A++ G 
Sbjct: 163 DSAMYLFEKMP----ERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGL 218

Query: 320 KIHRYVERKKL--------------------QPNLRLENALVDMYAKC------------ 347
             +  ++  +L                      NLRL+ AL D++ +             
Sbjct: 219 SKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEAL-DLFERMPERDLPSWNTMI 277

Query: 348 ------GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML-MSGLCPDS 400
                 G L  AR +F++M  ++V+SWT+MI+     G+  +A+ +FS+ML  +G  P+ 
Sbjct: 278 TGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQ 337

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDL 458
             FVSVL ACS+   L EG+   +I++   K V +   F  + L+++  + G++  A  +
Sbjct: 338 GTFVSVLGACSNLAGLGEGQQVHQIIS---KTVYQDSTFVVSALINMYSKCGELGTARKM 394

Query: 459 IKQ-MPMEPNERIWGSLVAA 477
               M  + +   W  ++AA
Sbjct: 395 FDDGMTSQRDLVSWNGIIAA 414



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 152/355 (42%), Gaps = 69/355 (19%)

Query: 2   KAVVLLCRHFST--TKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQH 59
           +A+ +  R  ST   KP Q   +S         AC+++      +   +++H QII    
Sbjct: 319 EALKIFSRMLSTNGAKPNQGTFVSVL------GACSNL----AGLGEGQQVH-QIISKTV 367

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDE--ITNKNVVFFNVLIRSYVNNYLYYDALHV 117
              +  +   L+  Y  CG++   R +FD+   + +++V +N +I +Y ++    +A++ 
Sbjct: 368 YQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINF 427

Query: 118 YKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG----LVA 173
           +K M   GF PD  TY  +L ACS +  +  GL+    +VK   D ++         LV 
Sbjct: 428 FKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVK---DRSILVREDHYACLVD 484

Query: 174 MYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
           + G+ G LKEA   +  + +K     W +++AG             C    +++I   A 
Sbjct: 485 LCGRAGRLKEAFGFIERLETKPSARVWGALLAG-------------CNVHANVKIGKQA- 530

Query: 233 TMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
                   +    PEN  +    +L L N           +YA+     EA  + L+M+ 
Sbjct: 531 -----AKKLLEVEPENAGT----YLLLSN-----------IYASTGKWREAARVRLKMKD 570

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV-DMYAK 346
            G++          P C   S + +G ++H +V   K     +L  +L+ D+++K
Sbjct: 571 KGLKKQ--------PGC---SWIEVGNRVHVFVVGDKSHSQSKLIYSLLRDLHSK 614


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 182/499 (36%), Positives = 281/499 (56%), Gaps = 32/499 (6%)

Query: 77  CGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVY-----KNM-SVHGFDPDC 130
            G +   R VFDE+ +++ V +N +I  Y  N  + ++  ++     KN+ S +     C
Sbjct: 60  AGNIGAARQVFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGC 119

Query: 131 -----------YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY------NLFNGNGLVA 173
                      Y      +  +  N+++ GL  +  V +    +      N+ +   +V 
Sbjct: 120 IEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVD 179

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
            Y K G +++AR + N MP K+VV+W  M++GY +NG+FDEA ++  +M      PD + 
Sbjct: 180 GYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQM------PDKNI 233

Query: 234 MASLLPSVTNTSPE-NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
           +A +   +T    E      K +F ++  ++L SWN MI  YA N    EA+ L+ QM  
Sbjct: 234 VA-MTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLK 292

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
            G++P+  ++ SVL AC  L++L  GRK H  V +   +  + + NAL+ MY KCGS+ +
Sbjct: 293 MGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILD 352

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           +   F Q+   DVVSW +MI+A+   G    A+A F +M  + + PD I F+S+LSAC H
Sbjct: 353 SELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGH 412

Query: 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG 472
           AG + E   +F  M   YK+V R EHFACLVD+L R G+VE+AY +I++MP E +  IWG
Sbjct: 413 AGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWG 472

Query: 473 SLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532
           +L+AAC ++ N+ +G LAA  I  L P  SG YV+LSNIYA AG WG+V RVR  M  +G
Sbjct: 473 ALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQG 532

Query: 533 IKKMPGAS-VEMNDQVQII 550
           +KK P  S +E++++V   
Sbjct: 533 VKKQPAYSWMEIDNKVHFF 551



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 176/394 (44%), Gaps = 48/394 (12%)

Query: 130 CYTYPCVL-KACSGSNSLLVGL------QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
           C++ PC L ++ S   ++ + +      Q H   +K+    +++  N  +    + G + 
Sbjct: 5   CFSPPCFLPRSPSIIRTIFLPIFHSFNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIG 64

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
            AR+V ++MP +D V+WNS++ GY +NG FDE+  +   M +  +      +A  +    
Sbjct: 65  AARQVFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIED-- 122

Query: 243 NTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
               E +    + F  +  +N  SWN MI+         EA  L+ +M       N IS 
Sbjct: 123 ----ERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRR----NVISY 174

Query: 303 ASVLPACGDLSALLLGRK----------------IHRYVERKKLQP-----------NLR 335
            +++     +  +   R                 I  YVE  K              N+ 
Sbjct: 175 TAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIV 234

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
              A++  Y K G   +A+ +FDQ+ C+D+ SW +MI+ Y  +G G +A+ L S+ML  G
Sbjct: 235 AMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMG 294

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           + PD    +SVL+ACS    L+EGR  +  ++   Y+   RI     L+ +  + G + +
Sbjct: 295 MQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYE--SRISICNALITMYCKCGSILD 352

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
           +    +Q+   P+   W +++AA   +   D  +
Sbjct: 353 SELAFRQID-HPDVVSWNAMIAAFARHGFYDRAL 385


>gi|302791537|ref|XP_002977535.1| hypothetical protein SELMODRAFT_106750 [Selaginella moellendorffii]
 gi|300154905|gb|EFJ21539.1| hypothetical protein SELMODRAFT_106750 [Selaginella moellendorffii]
          Length = 545

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 163/480 (33%), Positives = 275/480 (57%), Gaps = 9/480 (1%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN-YLYYD 113
           I    L  +  I   L+  YG CG +     +F  +   + + +N +I  Y  + +   +
Sbjct: 36  ITEAGLQGDIVISNALVNMYGKCGALESACEIFHGVPRNDAISWNGMISLYAQDGHSREE 95

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           AL +++ M   G  P+  T+  +L A SG+  L  G +IH  VV+ G    L  GN L+ 
Sbjct: 96  ALELFRRMHGEGLTPNKVTFLAILSAVSGARGLEEGRKIHTQVVESGYSGELSVGNALID 155

Query: 174 MYGKCGCLKEARRVLNDMPSK---DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
           MY KCG L++AR+    M  K   D+V W +M+A YA +G + EA ++ ++M+   +KPD
Sbjct: 156 MYSKCGSLEDARKTFAGMDEKNKPDLVLWTAMIAAYAGHGDYKEAFELFQQMQDQGLKPD 215

Query: 231 ADTMASLLPSVTNTSPE--NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
             ++ S+  ++ +   +  NV   ++MF K+  ++ VSW  MIAVYA +    EA+ ++ 
Sbjct: 216 -KSLVSIGNAIVHMYGKCGNVADARKMFDKMKERDTVSWTTMIAVYAEHGYDREALQIFK 274

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR-YVERKKLQPNLRLENALVDMYAKC 347
            M +  + P+ +++ +VL AC ++S L  GR +++ +VE    + +L L NA+  M+  C
Sbjct: 275 VMLLESVAPDKVTLINVLDACSNVSGLAQGRLVYKQFVESGAHELDLVLGNAVARMFGSC 334

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           GSL EAR +F+ +  +DVVSW  +I+AY   G   +++ LF +ML   + PD + FV VL
Sbjct: 335 GSLREAREIFESLAARDVVSWNCLITAYAQHGSFEESLRLFRRMLEECVKPDEVTFVGVL 394

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP-MEP 466
           SACSH GL+ +G  +F  M + Y++     H+ C+VDLLGRAG++ EA +L+ ++P    
Sbjct: 395 SACSHGGLVADGCQFFVSMVQDYQIPAEEIHYGCMVDLLGRAGRLAEAEELLSRLPCAAT 454

Query: 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526
           N+ +W SL+++C L+S++D G  AA  +  + P    + + L+ I+A +G W +  R+RK
Sbjct: 455 NDVMWTSLLSSCKLHSDLDRGKRAAKKLLAMVPGDPSHLLALATIHAASGEWKEAMRIRK 514



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/483 (26%), Positives = 208/483 (43%), Gaps = 117/483 (24%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M + G  PD       L AC   + L  G+ IH  + + GL  ++   N LV MYGKCG 
Sbjct: 1   MQLQGVAPDRVALIAALGACQDPSRLAAGVGIHSRITEAGLQGDIVISNALVNMYGKCGA 60

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF-DEALDVCREMESLRIKPDADTMASLLP 239
           L+ A  + + +P  D ++WN M++ YAQ+G   +EAL++ R M    + P+  T  ++L 
Sbjct: 61  LESACEIFHGVPRNDAISWNGMISLYAQDGHSREEALELFRRMHGEGLTPNKVTFLAILS 120

Query: 240 SVTNT----------------------SPENVL-----------SVKEMFLKLDNKN--- 263
           +V+                        S  N L             ++ F  +D KN   
Sbjct: 121 AVSGARGLEEGRKIHTQVVESGYSGELSVGNALIDMYSKCGSLEDARKTFAGMDEKNKPD 180

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR 323
           LV W  MIA YA +    EA +L+ QM+  G++P             D S + +G     
Sbjct: 181 LVLWTAMIAAYAGHGDYKEAFELFQQMQDQGLKP-------------DKSLVSIG----- 222

Query: 324 YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383
                         NA+V MY KCG++ +AR +FD+M+ +D VSWT+MI+ Y   G   +
Sbjct: 223 --------------NAIVHMYGKCGNVADARKMFDKMKERDTVSWTTMIAVYAEHGYDRE 268

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ-------------- 429
           A+ +F  ML+  + PD +  ++VL ACS+   L +GR  +K   E               
Sbjct: 269 ALQIFKVMLLESVAPDKVTLINVLDACSNVSGLAQGRLVYKQFVESGAHELDLVLGNAVA 328

Query: 430 ----------------YKLVPR-IEHFACLVDLLGRAGKVEEAYDLIKQMPME---PNER 469
                             L  R +  + CL+    + G  EE+  L ++M  E   P+E 
Sbjct: 329 RMFGSCGSLREAREIFESLAARDVVSWNCLITAYAQHGSFEESLRLFRRMLEECVKPDEV 388

Query: 470 IWGSLVAACCLYSNMDIGILAAD--HIF------HLAPNQSGYYVLLSNIYAKAGRWGDV 521
            +  +++AC        G L AD    F      +  P +  +Y  + ++  +AGR  + 
Sbjct: 389 TFVGVLSAC------SHGGLVADGCQFFVSMVQDYQIPAEEIHYGCMVDLLGRAGRLAEA 442

Query: 522 KRV 524
           + +
Sbjct: 443 EEL 445



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 160/367 (43%), Gaps = 73/367 (19%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVF---DEITNKNVVFFNVLIRS 104
           +K+H Q++ + +     S+G  L+  Y  CG + D R  F   DE    ++V +  +I +
Sbjct: 132 RKIHTQVVESGY-SGELSVGNALIDMYSKCGSLEDARKTFAGMDEKNKPDLVLWTAMIAA 190

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
           Y  +  Y +A  +++ M   G  PD                         S+V +     
Sbjct: 191 YAGHGDYKEAFELFQQMQDQGLKPD------------------------KSLVSI----- 221

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
              GN +V MYGKCG + +AR++ + M  +D V+W +M+A YA++G   EAL + + M  
Sbjct: 222 ---GNAIVHMYGKCGNVADARKMFDKMKERDTVSWTTMIAVYAEHGYDREALQIFKVMLL 278

Query: 225 LRIKPDADTMASLLPSVTNTSP----------------------------------ENVL 250
             + PD  T+ ++L + +N S                                    ++ 
Sbjct: 279 ESVAPDKVTLINVLDACSNVSGLAQGRLVYKQFVESGAHELDLVLGNAVARMFGSCGSLR 338

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
             +E+F  L  +++VSWN +I  YA +    E++ L+ +M    ++P+ ++   VL AC 
Sbjct: 339 EAREIFESLAARDVVSWNCLITAYAQHGSFEESLRLFRRMLEECVKPDEVTFVGVLSACS 398

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLE-NALVDMYAKCGSLTEARTVFDQMRCQDV--VS 367
               +  G +    + +    P   +    +VD+  + G L EA  +  ++ C     V 
Sbjct: 399 HGGLVADGCQFFVSMVQDYQIPAEEIHYGCMVDLLGRAGRLAEAEELLSRLPCAATNDVM 458

Query: 368 WTSMISA 374
           WTS++S+
Sbjct: 459 WTSLLSS 465


>gi|242094978|ref|XP_002437979.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
 gi|241916202|gb|EER89346.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
          Length = 657

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 164/486 (33%), Positives = 275/486 (56%), Gaps = 39/486 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDP 128
           L + Y    ++ D R VFD + + + + +N L+     +     AL  +  M  V    P
Sbjct: 155 LAKLYFKLSKVDDARKVFDAVPSPDTILWNTLLAGLPGSV----ALEAFVRMVEVGRVRP 210

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D  T    L+A + ++ + +G  +H   VK GL  +     GL+++Y KCG +  AR + 
Sbjct: 211 DSTTLASSLRAAAEASHVAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDCARSLF 270

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE- 247
           + M   D+V +N++++GY+ NG  + ++++ +E+ +   +P++ T+ +++P  +    E 
Sbjct: 271 DRMEDPDLVAYNALISGYSVNGMVESSVELFKELAASDWRPNSSTLVAVIPVYSPFGHEL 330

Query: 248 --------------------------------NVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
                                           ++ S + +F  +  K + SWN MI+ YA
Sbjct: 331 LARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMPEKTMESWNAMISGYA 390

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            N +   AV+L+  M+   ++PN  +++S L AC  L AL LG  +HR + ++ L+ N+ 
Sbjct: 391 QNGLTEMAVELFQLMQELNVQPNPTTISSTLSACAQLGALSLGTWVHRIIAKENLELNVY 450

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           +  AL+DMYAKCGS+ EAR++FD+M  ++VVSW +MIS YG+ G+G +A+ L+  ML + 
Sbjct: 451 VMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGRGAEALKLYKSMLDAC 510

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + P S  F+SVL ACSH GL++EG+  F++MT +Y++ P IEH  C+VDLLGRAGK+ EA
Sbjct: 511 ILPTSSTFLSVLYACSHGGLVDEGQKVFRVMTNEYRISPGIEHCTCMVDLLGRAGKLNEA 570

Query: 456 YDLIKQMPMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
            DLI + P       +WG+L++AC ++ N D+  LA+  +F L    +GYYVLLSN+Y  
Sbjct: 571 LDLISEFPQSAIGPGVWGALLSACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTS 630

Query: 515 AGRWGD 520
              + +
Sbjct: 631 KKHYSE 636



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 170/363 (46%), Gaps = 38/363 (10%)

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H   V  G   + F  + L  +Y K   + +AR+V + +PS D + WN+++AG   +  
Sbjct: 136 LHGLSVAAGYAADTFVASALAKLYFKLSKVDDARKVFDAVPSPDTILWNTLLAGLPGSVA 195

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTS-------------------PENVLS- 251
            +      R +E  R++PD+ T+AS L +    S                    E+V++ 
Sbjct: 196 LEA---FVRMVEVGRVRPDSTTLASSLRAAAEASHVAMGRCVHGYGVKCGLAEHEHVVTG 252

Query: 252 -------------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                         + +F ++++ +LV++N +I+ Y+ N M   +V+L+ ++      PN
Sbjct: 253 LMSLYSKCGDMDCARSLFDRMEDPDLVAYNALISGYSVNGMVESSVELFKELAASDWRPN 312

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
           + ++ +V+P        LL R +H +V + +L  +  +  AL  +Y +   +  AR++FD
Sbjct: 313 SSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFD 372

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
            M  + + SW +MIS Y  +G    AV LF  M    + P+     S LSAC+  G L  
Sbjct: 373 AMPEKTMESWNAMISGYAQNGLTEMAVELFQLMQELNVQPNPTTISSTLSACAQLGALSL 432

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           G +  +I+ ++  L   +     L+D+  + G + EA  +  +M    N   W ++++  
Sbjct: 433 GTWVHRIIAKE-NLELNVYVMTALIDMYAKCGSIAEARSIFDRMD-NKNVVSWNAMISGY 490

Query: 479 CLY 481
            L+
Sbjct: 491 GLH 493



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 1/189 (0%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           LHA  ++   L ++  +   L   Y     M   R +FD +  K +  +N +I  Y  N 
Sbjct: 335 LHA-FVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMPEKTMESWNAMISGYAQNG 393

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
           L   A+ +++ M      P+  T    L AC+   +L +G  +H  + K  L+ N++   
Sbjct: 394 LTEMAVELFQLMQELNVQPNPTTISSTLSACAQLGALSLGTWVHRIIAKENLELNVYVMT 453

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            L+ MY KCG + EAR + + M +K+VV+WN+M++GY  +GR  EAL + + M    I P
Sbjct: 454 ALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGRGAEALKLYKSMLDACILP 513

Query: 230 DADTMASLL 238
            + T  S+L
Sbjct: 514 TSSTFLSVL 522



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 155/328 (47%), Gaps = 63/328 (19%)

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAE-AVDLYLQM-EVHGIEPNAISVASVLPACG 310
           +++F  + + + + WN ++A      +P   A++ +++M EV  + P++ ++AS L A  
Sbjct: 169 RKVFDAVPSPDTILWNTLLA-----GLPGSVALEAFVRMVEVGRVRPDSTTLASSLRAAA 223

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           + S + +GR +H Y  +  L  +  +   L+ +Y+KCG +  AR++FD+M   D+V++ +
Sbjct: 224 EASHVAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDCARSLFDRMEDPDLVAYNA 283

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV-----------LSACSHAGL---- 415
           +IS Y ++G    +V LF ++  S   P+S   V+V           L+ C HA +    
Sbjct: 284 LISGYSVNGMVESSVELFKELAASDWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKAR 343

Query: 416 --------------------LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE-- 453
                               +E  R  F  M E+      +E +  ++    + G  E  
Sbjct: 344 LDADALVSTALTTLYCRLNDMESARSIFDAMPEK-----TMESWNAMISGYAQNGLTEMA 398

Query: 454 -EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG-----ILAADHIFHLAPNQSGYYVL 507
            E + L++++ ++PN     S ++AC     + +G     I+A +++      +   YV+
Sbjct: 399 VELFQLMQELNVQPNPTTISSTLSACAQLGALSLGTWVHRIIAKENL------ELNVYVM 452

Query: 508 --LSNIYAKAGRWGDVKRVRKFMNSKGI 533
             L ++YAK G   + + +   M++K +
Sbjct: 453 TALIDMYAKCGSIAEARSIFDRMDNKNV 480


>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Brachypodium distachyon]
          Length = 500

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 156/415 (37%), Positives = 242/415 (58%), Gaps = 39/415 (9%)

Query: 148 VGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA 207
           +G Q+H  +V+ GL  +      L+  Y  CG +  AR V +    KD+  WN M++GY 
Sbjct: 87  LGPQLHSVIVRAGLASDAHVSASLIQTYFSCGRVASARSVFDQTTDKDIFCWNVMISGYV 146

Query: 208 QNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSW 267
           ++G                                     N+   +E+F  +  +N+VSW
Sbjct: 147 KSG-------------------------------------NLACARELFDVMPARNVVSW 169

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
             +I  YA    P EAV+++ +M+V  GIEP+ +++ SVL ACGDL A+ LG  +HR+V 
Sbjct: 170 TTVIGAYAQMKQPVEAVEVFRRMQVEEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVV 229

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           R+ L   + L NA++DMY K G + +A  VF+ M  + VV+WT++I+ + + G G +A+ 
Sbjct: 230 RRGLCWQIPLMNAIIDMYVKLGCVRKAVEVFEGMDQKSVVTWTTVIAGFALHGLGLEAIE 289

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           +F +M M  + P+ + F+++LSACSH GL + GR+YFKIM  QY++  R+EH+ C+VDLL
Sbjct: 290 MFRRMEMENVAPNDVTFLAILSACSHVGLTDLGRWYFKIMVSQYRIKQRVEHYGCMVDLL 349

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
           GRAG + EA DL++ MP + N  IWG+L+AA   + + ++G  A  H+  L P+ SG Y+
Sbjct: 350 GRAGYLMEAQDLVQDMPFKANAAIWGALLAAARTHGDAELGKQALLHLIELEPHNSGNYI 409

Query: 507 LLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA-SVEMNDQVQIIALPLRSSKCL 560
           LLSNIYA+  RW DV ++RK M  +G++ +PGA S+E++  V        S  CL
Sbjct: 410 LLSNIYAEQERWDDVSKLRKQMKDRGLRNVPGASSIEVDGMVHEFTSRDGSHPCL 464



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 118/237 (49%), Gaps = 33/237 (13%)

Query: 40  KYPDIK-TLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFF 98
           K P ++ TL      +I+   L S+  +   L++TY +CG++   R VFD+ T+K++  +
Sbjct: 79  KIPHLRGTLGPQLHSVIVRAGLASDAHVSASLIQTYFSCGRVASARSVFDQTTDKDIFCW 138

Query: 99  NVLIRSYVN-----------------NYLYY--------------DALHVYKNMSVH-GF 126
           NV+I  YV                  N + +              +A+ V++ M V  G 
Sbjct: 139 NVMISGYVKSGNLACARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRRMQVEEGI 198

Query: 127 DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR 186
           +PD      VL AC    ++ +G  +H  VV+ GL + +   N ++ MY K GC+++A  
Sbjct: 199 EPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLCWQIPLMNAIIDMYVKLGCVRKAVE 258

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           V   M  K VVTW +++AG+A +G   EA+++ R ME   + P+  T  ++L + ++
Sbjct: 259 VFEGMDQKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVTFLAILSACSH 315


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 161/480 (33%), Positives = 265/480 (55%), Gaps = 41/480 (8%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           +P +    M  Y +CG++   R+VFDE+++++VV +N +I  Y    L  +A  +++ M 
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK--VGLDYNLFNGNGLVAMYGKCGC 180
                PD      ++ AC  + ++     I+  +++  V +D +L     LV MY   GC
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTA--LVTMYAGAGC 262

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           +  AR     M  +++    +MV+GY++ GR D+A                         
Sbjct: 263 MDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDA------------------------- 297

Query: 241 VTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                       + +F + + K+LV W  MI+ Y  +  P EA+ ++ +M   GI+P+ +
Sbjct: 298 ------------QVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVV 345

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           S+ SV+ AC +L  L   + +H  +    L+  L + NAL++MYAKCG L   R VF++M
Sbjct: 346 SMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKM 405

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             ++VVSW+SMI+A  M G+  DA++LF++M    + P+ + FV VL  CSH+GL+EEG+
Sbjct: 406 PRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGK 465

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
             F  MT++Y + P++EH+ C+VDL GRA  + EA ++I+ MP+  N  IWGSL++AC +
Sbjct: 466 KIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRI 525

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           +  +++G  AA  I  L P+  G  VL+SNIYA+  RW DV+ +R+ M  K + K  G S
Sbjct: 526 HGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLS 585



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 163/353 (46%), Gaps = 31/353 (8%)

Query: 21  VLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQM 80
           +L+   T+ +G  C D+  ++      +K+  +         N  +   ++  Y  CG++
Sbjct: 249 LLTALVTMYAGAGCMDMAREF-----FRKMSVR---------NLFVSTAMVSGYSKCGRL 294

Query: 81  VDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC 140
            D + +FD+   K++V +  +I +YV +    +AL V++ M   G  PD  +   V+ AC
Sbjct: 295 DDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISAC 354

Query: 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWN 200
           +    L     +H  +   GL+  L   N L+ MY KCG L   R V   MP ++VV+W+
Sbjct: 355 ANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWS 414

Query: 201 SMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD 260
           SM+   + +G   +AL +   M+   ++P+  T   +L   +++    V   K++F  + 
Sbjct: 415 SMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGL--VEEGKKIFASMT 472

Query: 261 NK-----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           ++      L  +  M+ ++   ++  EA+++   M V     N +   S++ AC     L
Sbjct: 473 DEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPV---ASNVVIWGSLMSACRIHGEL 529

Query: 316 LLGRKIHRYVERKKLQPNLRLENALV---DMYAKCGSLTEARTVFDQMRCQDV 365
            LG    ++  ++ L+     + ALV   ++YA+     + R +   M  ++V
Sbjct: 530 ELG----KFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNV 578


>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
 gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
          Length = 442

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 156/423 (36%), Positives = 249/423 (58%), Gaps = 39/423 (9%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M + G  P+  T+  +  AC+   SLL G  IH   +K G D++++    LV MY K G 
Sbjct: 1   MLLKGCPPNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGV 60

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           L  AR+V ++M  +D+ TWNS++AGY+++G  + AL++ +                L+PS
Sbjct: 61  LMLARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFK----------------LMPS 104

Query: 241 VTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV-HGIEPNA 299
                                +++VSW  MI+ Y+ N M  +A++++L+ME    + PN 
Sbjct: 105 ---------------------RSVVSWTTMISGYSQNGMYTKALEMFLKMEKDKEVRPNE 143

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           +++ASV  AC  L AL +G +I  Y     L  NL + N L++MYA+CG +  AR VF++
Sbjct: 144 VTIASVFSACAKLGALEVGERIESYARDNGLMKNLYVSNTLLEMYARCGKIDAARHVFNE 203

Query: 360 M-RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
           + + +++ SW SM+    + G+  +A+ L+ +ML  G+ PD + FV ++ AC+H GL+ +
Sbjct: 204 IGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPDDVTFVGLILACTHGGLVAK 263

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           G   F+ M   + +VP++EH+ C+VDLLGRAG+++EAYDL+K MPM+P+  IWG+L+ AC
Sbjct: 264 GWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEAYDLVKSMPMKPDSVIWGTLLGAC 323

Query: 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
             +SN++   +AA+ +F + P   G YV+L NIYA A RW  V ++RK M    I K  G
Sbjct: 324 SFHSNVEFAEIAAESLFQVEPWNPGNYVILCNIYASAQRWDGVAKLRKLMKGGQITKAAG 383

Query: 539 ASV 541
            SV
Sbjct: 384 YSV 386



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 5/160 (3%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEI-TNKNVVFFNVLIRSYVNNYLYYDALHVY 118
           L  N  +   L+  Y  CG++   RHVF+EI   +N+  +N ++     +    +AL +Y
Sbjct: 174 LMKNLYVSNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLY 233

Query: 119 KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV-VKVGLDYNLFNGNGLVAMYGK 177
             M   G +PD  T+  ++ AC+    +  G Q+  S+     +   L +   +V + G+
Sbjct: 234 DQMLGEGIEPDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGR 293

Query: 178 CGCLKEARRVLNDMPSK-DVVTWNSMVAG--YAQNGRFDE 214
            G L+EA  ++  MP K D V W +++    +  N  F E
Sbjct: 294 AGELQEAYDLVKSMPMKPDSVIWGTLLGACSFHSNVEFAE 333


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 167/509 (32%), Positives = 286/509 (56%), Gaps = 34/509 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y   G + + + +FDE+  KN + +N ++ +YV N    DA  ++++ +    D +
Sbjct: 67  MLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKA----DWE 122

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             ++ C++      N L+    I   +     + +  + N +++ Y + G L EA+R+  
Sbjct: 123 LISWNCMMGGYVKRNRLVDARGIFDRMP----ERDEVSWNTMISGYAQNGELLEAQRLFE 178

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDV---------------------CREMESLRIK 228
           + P +DV TW +MV+GY QNG  DEA  V                     C+ M+  R  
Sbjct: 179 ESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQAREL 238

Query: 229 PDA---DTMASLLPSVTNTSPE-NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAV 284
            +A     ++S    +T  +   ++   +  F ++  ++ +SW  +IA YA +    EA+
Sbjct: 239 FEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEAL 298

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMY 344
            L+++M+  G   N  +  S L  C +++AL LG+++H  V +  L+    + NAL+ MY
Sbjct: 299 HLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMY 358

Query: 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404
            KCG++ +A  VF+ +  ++VVSW +MI+ Y   G G +A+ LF  M  +G+ PD +  V
Sbjct: 359 CKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMV 418

Query: 405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM 464
            VLSACSH GL+++G  YF  MT+ Y +    +H+ C++DLLGRAG++++A +L+K MP 
Sbjct: 419 GVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPF 478

Query: 465 EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV 524
           EP+   WG+L+ A  ++ N ++G  AA  IF + P+ SG YVLLSN+YA +GRWGDV R+
Sbjct: 479 EPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRM 538

Query: 525 RKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
           R  M  +G+KK+PG S VE+ +++    +
Sbjct: 539 RLRMRDRGVKKVPGYSWVEVQNKIHTFTV 567



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 140/282 (49%), Gaps = 29/282 (10%)

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           + ++ + N +++ Y + G +KEA+ + ++MP K+ ++WN M+A Y QNGR ++A    R 
Sbjct: 58  ERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDAR---RL 114

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
            ES   K D + ++             ++  + +F ++  ++ VSWN MI+ YA N    
Sbjct: 115 FES---KADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELL 171

Query: 282 EAVDLYLQMEV---------------HGIEPNAISVASVLPACGDLS--ALLLG----RK 320
           EA  L+ +  V               +G+   A  V   +P    +S  A++ G    ++
Sbjct: 172 EAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKR 231

Query: 321 IHRYVERKKLQP--NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           + +  E  +  P  N+   N ++  YA+ G + +AR  FD+M  +D +SW ++I+ Y  S
Sbjct: 232 MDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQS 291

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           G G +A+ LF +M   G   +   F S LS C+    LE G+
Sbjct: 292 GYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGK 333



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 127/270 (47%), Gaps = 23/270 (8%)

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
           N+ + + +F ++  +++VSWN M++ YA N    EA +++ +M       N+IS   +L 
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPC----KNSISWNGMLA 100

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           A      +   R++       K    L   N ++  Y K   L +AR +FD+M  +D VS
Sbjct: 101 AYVQNGRIEDARRLF----ESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVS 156

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W +MIS Y  +G+  +A  LF +  +     D   + +++S     G+L+E R  F  M 
Sbjct: 157 WNTMISGYAQNGELLEAQRLFEESPVR----DVFTWTAMVSGYVQNGMLDEARRVFDGMP 212

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
           E+  +      +  ++    +  ++++A +L + MP + N   W +++       N DI 
Sbjct: 213 EKNSV-----SWNAIIAGYVQCKRMDQARELFEAMPCQ-NVSSWNTMITGYA--QNGDIA 264

Query: 488 ILAADHIFHLAPNQ-SGYYVLLSNIYAKAG 516
              A + F   P + S  +  +   YA++G
Sbjct: 265 --QARNFFDRMPQRDSISWAAIIAGYAQSG 292



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 11/203 (5%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H +++    L S   +G  L+  Y  CG + D   VF+ I  K VV +N +I  Y  
Sbjct: 333 KQVHGRVV-KAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYAR 391

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYNLF 166
           +    +AL ++++M   G  PD  T   VL ACS +  +  G +   S+ +  G+  N  
Sbjct: 392 HGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSK 451

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRF---DEALDVCREM 222
           +   ++ + G+ G L +A+ ++ +MP + D  TW +++     +G     ++A  +  EM
Sbjct: 452 HYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM 511

Query: 223 ESLRIKPDADTMASLLPSVTNTS 245
           E     PD   M  LL ++   S
Sbjct: 512 E-----PDNSGMYVLLSNLYAAS 529



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 26/209 (12%)

Query: 324 YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383
           ++ER  L+  +R  N           L  AR +FDQM  +DVVSW +M+S Y  +G   +
Sbjct: 31  FLERHDLRGCVRYRN-----------LRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKE 79

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV 443
           A  +F +M     C +SI++  +L+A    G +E+ R  F+   + ++L+     + C++
Sbjct: 80  AKEIFDEM----PCKNSISWNGMLAAYVQNGRIEDARRLFESKAD-WELIS----WNCMM 130

Query: 444 DLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503
               +  ++ +A  +  +MP E +E  W ++++           +L A  +F  +P +  
Sbjct: 131 GGYVKRNRLVDARGIFDRMP-ERDEVSWNTMISGYAQNGE----LLEAQRLFEESPVRDV 185

Query: 504 Y-YVLLSNIYAKAGRWGDVKRVRKFMNSK 531
           + +  + + Y + G   + +RV   M  K
Sbjct: 186 FTWTAMVSGYVQNGMLDEARRVFDGMPEK 214


>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 491

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 168/508 (33%), Positives = 280/508 (55%), Gaps = 41/508 (8%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH---VFDEITNK 93
           +LDK   I  +K++   + ++  L  +P    K++             H   +F  + ++
Sbjct: 16  LLDKCRTISQIKQIQTHLTVSGTL-KDPYAAAKIISFCALSSNQFSLSHAYRLFLGLRHR 74

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           +   +N +IR++        A+ ++KNM    F P+ YTY  + KAC+  N+L +GL  H
Sbjct: 75  STFIWNTVIRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLGLACH 134

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
           C  +K+G ++  F  NGLV M+   GC+  AR++ +   ++DV+TW +++ GY + G+  
Sbjct: 135 CQSIKLGWEFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALINGYVRAGQ-- 192

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273
                                              VL  +E+F K+  +N VSW+ MI  
Sbjct: 193 -----------------------------------VLIGRELFDKMPERNSVSWSAMITG 217

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           Y       EA++L+  M + G  PN   +   + AC  L AL  GR IH Y++R ++  +
Sbjct: 218 YVRVGFFEEALELFNAMLISGFWPNHAGIVCAINACASLGALDQGRWIHCYIKRNRMDLD 277

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             +  AL+DMYAKCG +  A ++F ++R +DV  +T +IS     GQ   AV LF +M  
Sbjct: 278 RVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLANHGQSATAVELFERMHS 337

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
            G+ P+ + FVSVL+ACS  GL+++G   F+ M++ Y   P+++H+ CLVDLLGRAGK+E
Sbjct: 338 EGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMSKIYGDEPQVQHYGCLVDLLGRAGKLE 397

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA  L+K+MPM+P+  + G+L+ A  +Y ++++G    + +  L+ + SG +V+LSN+YA
Sbjct: 398 EAKKLVKEMPMKPDSYVLGALLNASRVYGDVELGEETVESLAQLSLDHSGVHVVLSNMYA 457

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGASV 541
            A +W +V RVR+ M  K ++K+PG S+
Sbjct: 458 SANKWDEVARVRRGMGDKKVRKVPGCSL 485


>gi|224122888|ref|XP_002318941.1| predicted protein [Populus trichocarpa]
 gi|222857317|gb|EEE94864.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 183/519 (35%), Positives = 289/519 (55%), Gaps = 38/519 (7%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +   L+++Y   G     R++FDE+  ++VV +  +I  Y +   Y  A  V+ +M  +G
Sbjct: 46  LATDLLKSYFERGLTSQARNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVKNG 105

Query: 126 FDP-DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGC-LK 182
            DP + +T   VLKAC G   +  G  +H   +K   ++  ++  N L+ MY  CG  ++
Sbjct: 106 NDPPNAFTISSVLKACKGMKRVFCGRLVHGLAIKRRFMEGFIYVDNALMDMYASCGVGMR 165

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM--ESLRIKPDADTMA----- 235
           +A  V +D+  K+VV+W +++AGY   G  + AL + REM  + + + P + ++A     
Sbjct: 166 DACVVFHDIKEKNVVSWTTLIAGYTHRGNGNRALQIFREMLLDGVALNPHSISIAVRACA 225

Query: 236 ---------SLLPSVTNTSPENVLSV-----------------KEMFLKLDNKNLVSWNV 269
                     +  +V     E+ L V                  + F  +  K+L++WN 
Sbjct: 226 SIGSQNFGRQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMTEKDLITWNT 285

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           +IA Y   S   E   ++ QME  G  PN  +  S++ AC + +AL  G+++H  + R+ 
Sbjct: 286 LIAGY-ERSDSIEPFFIFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRG 344

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           L  NL L NAL+DMYAKCG++ +++  F +M C ++VSWTSM+  YG  G G +AV LF 
Sbjct: 345 LDGNLELANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGYGKEAVELFD 404

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           +M+ SG+ PD + F++VL ACSHAGL+++G  Y   M   Y + P  E + C+VDLLGR 
Sbjct: 405 EMVRSGIRPDQVVFMAVLHACSHAGLVDQGLRYINCMINDYHIKPNQEIYGCVVDLLGRP 464

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G+VE+AY LI+ MP   +E +WG+L+ AC  ++   +G LAA     L PN    YV+LS
Sbjct: 465 GRVEDAYQLIRSMPFMADESVWGALLGACKAHNFSRLGKLAAKKALALRPNMVETYVMLS 524

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           NIYA  G+WG+  R+RK M   G +K+ G S +E+ +QV
Sbjct: 525 NIYAAEGKWGEAARMRKLMKRAGCRKVAGRSWIEVRNQV 563



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 107/196 (54%), Gaps = 2/196 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++H  +I      S+  +   ++  Y  CG + +    F+++T K+++ +N LI  Y  
Sbjct: 234 RQIHTAVI-KHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMTEKDLITWNTLIAGYER 292

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +    +   ++  M   GF P+C+T+  ++ AC+ + +L  G Q+H  + + GLD NL  
Sbjct: 293 SD-SIEPFFIFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRGLDGNLEL 351

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY KCG + ++++  ++M   ++V+W SM+ GY  +G   EA+++  EM    I
Sbjct: 352 ANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGI 411

Query: 228 KPDADTMASLLPSVTN 243
           +PD     ++L + ++
Sbjct: 412 RPDQVVFMAVLHACSH 427



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 2/152 (1%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           I  + L  N  +   L+  Y  CG ++D++  F E++  N+V +  ++  Y  +    +A
Sbjct: 340 IFRRGLDGNLELANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGYGKEA 399

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ-IHCSVVKVGLDYNLFNGNGLVA 173
           + ++  M   G  PD   +  VL ACS +  +  GL+ I+C +    +  N      +V 
Sbjct: 400 VELFDEMVRSGIRPDQVVFMAVLHACSHAGLVDQGLRYINCMINDYHIKPNQEIYGCVVD 459

Query: 174 MYGKCGCLKEARRVLNDMP-SKDVVTWNSMVA 204
           + G+ G +++A +++  MP   D   W +++ 
Sbjct: 460 LLGRPGRVEDAYQLIRSMPFMADESVWGALLG 491


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 181/529 (34%), Positives = 286/529 (54%), Gaps = 52/529 (9%)

Query: 23  STQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGAC--GQM 80
           S Q  L S ++C  +         +K+ HA +I    L  +P    KL++   A   G +
Sbjct: 14  SNQLQLFSLESCKSM-------NQIKQTHAHLITTG-LILHPITANKLLKVLIASSFGSL 65

Query: 81  VDTRHVFDEITNKNVVFFNVLIRSY-VNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLK 138
                +FD+I   +V  +N +I+++ V     ++++ ++ +M  V GF P+ YT+  V K
Sbjct: 66  SYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFK 125

Query: 139 ACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVT 198
           AC     +L G QI    +K+GL+ NLF  N ++ MY   G + EARRV +    +D+ +
Sbjct: 126 ACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYS 185

Query: 199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLK 258
           WN M+ GY  +G    A                                     KEMF +
Sbjct: 186 WNIMIGGYVGSGEIGRA-------------------------------------KEMFDE 208

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +  +++VSW  +IA Y       EA+DL+ +M   G  PN  ++AS L AC +L AL  G
Sbjct: 209 MSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQG 268

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF-DQMRCQ-DVVSWTSMISAYG 376
           R IH Y+++ +++ N RL  +L+DMYAKCG +  A  VF D+   +  V  W +MI  Y 
Sbjct: 269 RWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYA 328

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
           M G+  +A+ LF +M +  + P+ + FV++L+ACSH  L+EEGR YFK M   Y + P I
Sbjct: 329 MHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEI 388

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           EH+ C+VDLLGR+G ++EA + +  MPM P+  IWG+L+ AC ++ +++ G      I  
Sbjct: 389 EHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKE 448

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMN 544
           L  +  G +VLL+N+Y+ +G+W + K VR+ +   G KK PG +S+E+N
Sbjct: 449 LDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELN 497


>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
          Length = 773

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 187/553 (33%), Positives = 296/553 (53%), Gaps = 46/553 (8%)

Query: 27  TLLSG-DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH 85
           T+ SG +AC  +LD   ++ + + LH   ++   +  +P +   L   Y  C    D   
Sbjct: 222 TMESGLEACG-VLD---ELNSGRCLHG-YVVKVGIGDSPMVISALFSMYSKCYSTEDACA 276

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +F E+  K+VV +  LI  Y    L  +A+ +++ M   G  PD     CVL     + +
Sbjct: 277 LFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGLGNNGN 336

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           +  G   H  + K     ++  GN L++MYGK   +  A RV   +  +D  +WN MV G
Sbjct: 337 VHGGKTFHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDADSWNLMVVG 396

Query: 206 YAQNGRFDEALDVCREMESLRIKPD----ADTMASLLPSVT------------------- 242
           Y + G   + L++ REM+ LR K +    AD++ S + S +                   
Sbjct: 397 YCKAGCDVKCLELYREMQ-LRDKYEFWCVADSLVSAISSCSRLAELRLGRSAHCYSIKHL 455

Query: 243 ---NTSPENVL------------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
              ++S  NVL            + K   L     ++V+WN +I+ YA+      A+ LY
Sbjct: 456 LDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNAAMSLY 515

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
            QM + G+ PN+ ++ +V+ AC +L AL  G KIH YV+      ++ +  AL+DMYAKC
Sbjct: 516 DQMLIEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTALIDMYAKC 575

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           G L  AR +FD M   DVV+W  MIS YGM G+   A+ LF KM    + P+ + F+++L
Sbjct: 576 GQLGIARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNGVTFLAIL 635

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
           SA  H+GLLEEGR  F  M  +Y L P ++H+AC+VDLLG++G ++EA D++  MP+EP+
Sbjct: 636 SALCHSGLLEEGRKVFTRMG-KYSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMPIEPD 694

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527
             IWG+L++AC L+ N ++G+  A   F   P   GYY+L+SN Y  A +W +++++R+ 
Sbjct: 695 GGIWGTLLSACKLHDNFEMGLRIAKKAFASDPENEGYYILISNSYGGAKKWDEIEKLRET 754

Query: 528 MNSKGIKKMPGAS 540
           M + G++K  G S
Sbjct: 755 MKNLGVQKGVGWS 767



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 201/442 (45%), Gaps = 48/442 (10%)

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
           ++   L+  Y  CG + D   VF+E+  ++VV +  +I   V N    + L     M   
Sbjct: 151 AVASSLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVISGCVRNGESGEGLRYLVEMVRL 210

Query: 125 GFD----PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
             D    P+  T    L+AC   + L  G  +H  VVKVG+  +    + L +MY KC  
Sbjct: 211 AGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKCYS 270

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
            ++A  +  ++P KDVV+W S++  Y + G   EA+++ ++M    ++PD   ++ +L  
Sbjct: 271 TEDACALFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSG 330

Query: 241 VTNTSP---------------------------------ENVLSVKEMFLKLDNKNLVSW 267
           + N                                    E V S   +F  L  ++  SW
Sbjct: 331 LGNNGNVHGGKTFHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDADSW 390

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEV---HGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           N+M+  Y       + ++LY +M++   +     A S+ S + +C  L+ L LGR  H Y
Sbjct: 391 NLMVVGYCKAGCDVKCLELYREMQLRDKYEFWCVADSLVSAISSCSRLAELRLGRSAHCY 450

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYD 383
             +  L  +  + N L+ MY +CG    A  +F   + + DVV+W ++IS+Y   G    
Sbjct: 451 SIKHLLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNA 510

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR---YYFKIMTEQYKLVPRIEHFA 440
           A++L+ +ML+ GL P+S   ++V+SAC++   LE G     Y K M   Y     +    
Sbjct: 511 AMSLYDQMLIEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYD----VSINT 566

Query: 441 CLVDLLGRAGKVEEAYDLIKQM 462
            L+D+  + G++  A  +   M
Sbjct: 567 ALIDMYAKCGQLGIARRIFDSM 588



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 165/387 (42%), Gaps = 69/387 (17%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           L ++HA + +   L+  P +  KL+  Y + G+       F      +   +N LIR++ 
Sbjct: 29  LLRVHA-LAVTSGLYQRPDLAAKLVSAYSSAGRPGLAALAFSASPRPDAFLWNSLIRTHH 87

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
               +  AL  ++ M   G  P  +T P    A +   +L VG  +H   V+    Y L 
Sbjct: 88  CASDFVAALSAHRRMLASGARPSPFTAPLAASASAELGALGVGAAVHAYCVR----YGLL 143

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
            G+G                         V   +S+V  YA+ G   +A+ V  EM    
Sbjct: 144 VGDG-----------------------DSVAVASSLVYMYARCGNVRDAVKVFEEM---- 176

Query: 227 IKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
                              PE              +++V+W  +I+    N    E +  
Sbjct: 177 -------------------PE--------------RDVVAWTAVISGCVRNGESGEGLRY 203

Query: 287 YLQM-EVHG---IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
            ++M  + G   + PN+ ++ S L ACG L  L  GR +H YV +  +  +  + +AL  
Sbjct: 204 LVEMVRLAGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFS 263

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MY+KC S  +A  +F ++  +DVVSWTS+I  Y   G   +A+ LF +M+ SGL PD I 
Sbjct: 264 MYSKCYSTEDACALFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEIL 323

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQ 429
              VLS   + G +  G+ +  ++T++
Sbjct: 324 VSCVLSGLGNNGNVHGGKTFHAVITKR 350



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 18/225 (8%)

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           WN +I  +   S    A+  + +M   G  P+  +      A  +L AL +G  +H Y  
Sbjct: 79  WNSLIRTHHCASDFVAALSAHRRMLASGARPSPFTAPLAASASAELGALGVGAAVHAYCV 138

Query: 327 RKKL----QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA---YGMSG 379
           R  L      ++ + ++LV MYA+CG++ +A  VF++M  +DVV+WT++IS     G SG
Sbjct: 139 RYGLLVGDGDSVAVASSLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVISGCVRNGESG 198

Query: 380 QGYDAVALFSKMLMSG-LCPDSIAFVSVLSACSHAGLLEEGR----YYFKIMTEQYKLVP 434
           +G   +    ++   G + P+S    S L AC     L  GR    Y  K+      +V 
Sbjct: 199 EGLRYLVEMVRLAGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMV- 257

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
                + L  +  +    E+A  L  ++P E +   W SL+   C
Sbjct: 258 ----ISALFSMYSKCYSTEDACALFLELP-EKDVVSWTSLIGIYC 297


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 179/525 (34%), Positives = 288/525 (54%), Gaps = 32/525 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           KK+HA ++I     S+  +   L+  Y   G   D   VF+E+  +++V +N +I  Y+ 
Sbjct: 150 KKIHA-MVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLA 208

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY-NLF 166
               + +L ++K M   GF PD ++    L ACS   S  +G +IHC  V+  ++  ++ 
Sbjct: 209 LGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVM 268

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESL 225
               ++ MY K G +  A R+ N M  +++V WN M+  YA+NGR  +A    ++M E  
Sbjct: 269 VMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQN 328

Query: 226 RIKPDADTMASLLPSVTNTS--------------PENVL---------------SVKEMF 256
            ++PD  T  +LLP+                   P  VL               S + +F
Sbjct: 329 GLQPDVITSINLLPASAILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIF 388

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
            ++  KN++SWN +IA Y  N     A++L+ ++    + P++ ++AS+LPA  +  +L 
Sbjct: 389 DRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLS 448

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
            GR+IH Y+ + +   N  + N+LV MYA CG L +AR  F+ +  +DVVSW S+I AY 
Sbjct: 449 EGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYA 508

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
           + G G  +V LFS+M+ S + P+   F S+L+ACS +G+++EG  YF+ M  +Y + P I
Sbjct: 509 VHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGI 568

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           EH+ C++DL+GR G    A   +++MP  P  RIWGSL+ A   + ++ I   AA+ IF 
Sbjct: 569 EHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFK 628

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           +  + +G YVLL N+YA+AGRW DV R++  M SKGI +    S 
Sbjct: 629 MEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRST 673



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 145/479 (30%), Positives = 245/479 (51%), Gaps = 45/479 (9%)

Query: 69  KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
           + +R +     M D   +FDE+   +   +NV+I+ + +  LY +A+  Y  M   G   
Sbjct: 69  RALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKA 128

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D +TYP V+K+ +G +SL  G +IH  V+K+G   +++  N L+++Y K GC  +A +V 
Sbjct: 129 DTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVF 188

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT-SPE 247
            +MP +D+V+WNSM++GY   G    +L + +EM     KPD  +  S L + ++  SP+
Sbjct: 189 EEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPK 248

Query: 248 ---------------------------------NVLSVKEMFLKLDNKNLVSWNVMIAVY 274
                                             V   + +F  +  +N+V+WNVMI  Y
Sbjct: 249 MGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCY 308

Query: 275 ANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           A N    +A   + +M E +G++P+ I+  ++LPA    SA+L GR IH Y  R+   P+
Sbjct: 309 ARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPA----SAILEGRTIHGYAMRRGFLPH 364

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
           + LE AL+DMY +CG L  A  +FD+M  ++V+SW S+I+AY  +G+ Y A+ LF ++  
Sbjct: 365 MVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWD 424

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
           S L PDS    S+L A + +  L EGR  +  I+  +Y     I     LV +    G +
Sbjct: 425 SSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTII--LNSLVHMYAMCGDL 482

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF--HLAPNQSGYYVLLS 509
           E+A      + ++ +   W S++ A  ++    I +     +    + PN+S +  LL+
Sbjct: 483 EDARKCFNHILLK-DVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLA 540



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 133/328 (40%), Gaps = 47/328 (14%)

Query: 37  ILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
           IL  Y +  +L   +++HA I+ +++  SN  I   L+  Y  CG + D R  F+ I  K
Sbjct: 437 ILPAYAESLSLSEGREIHAYIVKSRYW-SNTIILNSLVHMYAMCGDLEDARKCFNHILLK 495

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           +VV +N +I +Y  +     ++ ++  M     +P+  T+  +L ACS S  +  G +  
Sbjct: 496 DVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYF 555

Query: 154 CSVVK-VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
            S+ +  G+D  + +   ++ + G+ G    A+R L +MP                    
Sbjct: 556 ESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMP-------------------- 595

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS-VKEMFLKLDNKNLVSWNVMI 271
                           P A    SLL +  N     +     E   K+++ N   + +++
Sbjct: 596 --------------FVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLL 641

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
            +YA      +   + L ME  GI  +  S  S + A G       G + H  V   K+ 
Sbjct: 642 NMYAEAGRWEDVNRIKLLMESKGI--SRTSSRSTVEAKGKSHVFTNGDRSH--VATNKIY 697

Query: 332 PNLRLENALV---DMYAKCGSLTEARTV 356
             L + + +V   D+Y  C S     T+
Sbjct: 698 EVLDVVSRMVGEEDIYVHCVSRLRPETL 725


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 176/484 (36%), Positives = 256/484 (52%), Gaps = 35/484 (7%)

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
           N++VV +  LI   V N  +  AL  + NM      P+ +T+PC  KA     S LVG Q
Sbjct: 70  NRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQ 129

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H   VK G   ++F G     MY K G  +EAR++ ++MP +++ TWN+ ++     GR
Sbjct: 130 VHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGR 189

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPS----------------VTNTSPENVLSVKE- 254
           +D+AL    E      +P+  T  + L +                V  +  E  +SV   
Sbjct: 190 YDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANG 249

Query: 255 ----------------MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                           +F  +   N VSW  MI  Y  N    +A  ++L+    GIEP 
Sbjct: 250 LIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPT 309

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
              V+SVL AC  LS L +G+ +H    +  +  N+ + +ALVDMY KCGS+ +A   FD
Sbjct: 310 DFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFD 369

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG--LCPDSIAFVSVLSACSHAGLL 416
           +M  +++V+W +MI  Y   GQ   AV LF +M      + P+ + FV VLSACS AG +
Sbjct: 370 EMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSV 429

Query: 417 EEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
             G   F+ M  +Y + P  EH+AC+VDLLGRAG VE+AY  IK+MP+ P   +WG+L+ 
Sbjct: 430 NVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLG 489

Query: 477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKM 536
           A  ++   ++G +AAD++F L P  SG +VLLSN++A AGRW +   VRK M   GIKK 
Sbjct: 490 ASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKG 549

Query: 537 PGAS 540
            G S
Sbjct: 550 AGCS 553



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 166/370 (44%), Gaps = 38/370 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++HA  +    + S+  +G      Y   G   + R +FDE+  +N+  +N  + + V 
Sbjct: 128 KQVHALAVKAGQI-SDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVL 186

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
              Y DAL  +      G++P+  T+   L AC+G++ L +G Q+H  V++ G + ++  
Sbjct: 187 EGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSV 246

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            NGL+  YGKC  +  +  + + +   + V+W SM+  Y QN   ++A  V        I
Sbjct: 247 ANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGI 306

Query: 228 KPDADTMASLLPSVTNTSPENV------LSVK---------------------------E 254
           +P    ++S+L +    S   V      L+VK                            
Sbjct: 307 EPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAER 366

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV--HGIEPNAISVASVLPACGDL 312
            F ++  +NLV+WN MI  YA+      AV L+ +M    H + PN ++   VL AC   
Sbjct: 367 AFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRA 426

Query: 313 SALLLGRKIHRYVE-RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTS 370
            ++ +G +I   +  R  ++P       +VD+  + G + +A     +M  +  VS W +
Sbjct: 427 GSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGA 486

Query: 371 MISAYGMSGQ 380
           ++ A  M G+
Sbjct: 487 LLGASKMFGK 496


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 177/538 (32%), Positives = 297/538 (55%), Gaps = 43/538 (7%)

Query: 45  KTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI---TNKNVVFFNVL 101
           +T + +H  + +     + P +   L+  Y  CG+M D    F E      +NVV +NV+
Sbjct: 182 ETGRAVHG-LAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVM 240

Query: 102 IRSYVNNYLYYDALHVYKNMSVH--GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
           +  Y  N     A  + + M +   G   D  T   VL  CSG   L    ++H  VV+ 
Sbjct: 241 LGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRR 300

Query: 160 GLDYNL-FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
           GL        N L+A YG+CGCL  A RV + + SK V +WN+++  +AQNG    A+++
Sbjct: 301 GLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIEL 360

Query: 219 CREM-ESLRIKPDADTMASLLPSVTNTS-----------------------PENVLSV-- 252
            REM  +   KPD  ++ SLL +  N                           ++LSV  
Sbjct: 361 FREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYI 420

Query: 253 --------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH--GIEPNAISV 302
                   + +F  ++ K+ VSWN MIA Y+ N +P E++ L+ +M+    G  P+ ++ 
Sbjct: 421 QCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAA 480

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            S L AC +L A+ LG+++H +  +  L  +  L ++++DMY+KCGS+ +AR  FD+++ 
Sbjct: 481 TSALVACSELPAVRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKA 540

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           +D VSWT MI+ Y ++G+G +AV L+ KM   G+ PD   ++ +L AC HAG+LE+G  +
Sbjct: 541 KDAVSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDGLCF 600

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           F+ M    K+  ++EH+AC++ +L RAG+  +A  L++ MP EP+ +I  S+++AC ++ 
Sbjct: 601 FQEMRNLPKIEAKLEHYACVIGMLSRAGRFADAVALMEVMPEEPDAKILSSVLSACHMHG 660

Query: 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            +++G   AD +  L P+++ +YVL SN+YA + +W ++++VRK +   G+ K PG S
Sbjct: 661 EVELGKKVADKLLELEPHKAEHYVLASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGCS 718



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 138/551 (25%), Positives = 238/551 (43%), Gaps = 91/551 (16%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY----LYYDALHV 117
            +P +G  L+  YG CG++ D   VF+ +  +N+V +N L+ +  +      L+ D L  
Sbjct: 97  GDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPRRGLELFRDCLED 156

Query: 118 YKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK 177
               +     PD  T   VL  C+       G  +H   VK G D      N LV MY K
Sbjct: 157 LGGTAA----PDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAK 212

Query: 178 CGCLKEARRVLNDMP---SKDVVTWNSMVAGYAQNGRFDEALDVCRE--MESLRIKPDAD 232
           CG + +A     + P    ++VV+WN M+ GYA+NG    A  + RE  ME   +  D  
Sbjct: 213 CGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEI 272

Query: 233 TMASLLPSVTNTSPE-----------------------------------NVLSVKEMFL 257
           TM S+LP V +  PE                                    +L    +F 
Sbjct: 273 TMLSVLP-VCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFD 331

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALL 316
            + +K + SWN +I  +A N   + A++L+ +M    G +P+  S+ S+L ACG+L  LL
Sbjct: 332 GICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLL 391

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
            G+  H ++ R  L+ +  +  +L+ +Y +CG  + AR +FD +  +D VSW +MI+ Y 
Sbjct: 392 HGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYS 451

Query: 377 MSGQGYDAVALFSKM-------------------------------------LMSGLCPD 399
            +G   +++ LF +M                                     L + LC D
Sbjct: 452 QNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKEMHCFALKADLCED 511

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
           S    S++   S  G +++ R +F  +  +  +   +      V+  GR  +    YD +
Sbjct: 512 SFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVN--GRGKEAVGLYDKM 569

Query: 460 KQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG--YYVLLSNIYAKAGR 517
            +  MEP+   +  L+ AC     ++ G+     + +L   ++   +Y  +  + ++AGR
Sbjct: 570 GREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQEMRNLPKIEAKLEHYACVIGMLSRAGR 629

Query: 518 WGDVKRVRKFM 528
           + D   + + M
Sbjct: 630 FADAVALMEVM 640



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 175/366 (47%), Gaps = 47/366 (12%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNM--SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
           +N L+        + DAL +   +  +  G  PD +T P  LK+C G +    G Q+H  
Sbjct: 33  WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRGDD----GRQVHAV 88

Query: 156 VVKVGL-DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
             K+GL D + F GN LV+MYG+CG + +A +V   M  +++V+WN+++A  A   R  E
Sbjct: 89  AAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPRRGLE 148

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTS-PE-----NVLSVK--------------E 254
               C E       PD  T+ ++LP     + PE     + L+VK              +
Sbjct: 149 LFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVD 208

Query: 255 MFLKLD----------------NKNLVSWNVMIAVYANNSMPAEAVDLY--LQMEVHGIE 296
           M+ K                   +N+VSWNVM+  YA N     A  L   +QME  G+ 
Sbjct: 209 MYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVP 268

Query: 297 PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ-PNLRLENALVDMYAKCGSLTEART 355
            + I++ SVLP C  L  L   R++H +V R+ L      + NAL+  Y +CG L  A  
Sbjct: 269 ADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACR 328

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS-GLCPDSIAFVSVLSACSHAG 414
           VFD +  + V SW ++I A+  +G+   A+ LF +M  + G  PD  +  S+L AC +  
Sbjct: 329 VFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLK 388

Query: 415 LLEEGR 420
            L  G+
Sbjct: 389 HLLHGK 394



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 191/441 (43%), Gaps = 85/441 (19%)

Query: 42  PDIKTLKKLHAQIIINQHLH-SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           P++  L++LHA  ++ + LH +   +   L+  YG CG ++    VFD I +K V  +N 
Sbjct: 285 PELAKLRELHA-FVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNA 343

Query: 101 LIRSYVNNYLYYDALHVYKNMS-VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
           LI ++  N     A+ +++ M+   G  PD ++   +L AC     LL G   H  +++ 
Sbjct: 344 LIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRN 403

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           GL+ + F    L+++Y +CG    AR + + +  KD V+WN+M+AGY+QNG   E+L + 
Sbjct: 404 GLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLF 463

Query: 220 REME--------SLRIKPDADTMASLLPSVTNTSPENVLSVKE----------------- 254
           REM+        SL     A    S LP+V      +  ++K                  
Sbjct: 464 REMQSKKGGHWPSLLAATSALVACSELPAVRLGKEMHCFALKADLCEDSFLSSSIIDMYS 523

Query: 255 ----------MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
                      F +L  K+ VSW VMI  YA N    EAV LY +M   G+EP+  +   
Sbjct: 524 KCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLG 583

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           +L ACG                                     G L +    F +MR   
Sbjct: 584 LLMACG-----------------------------------HAGMLEDGLCFFQEMRNLP 608

Query: 365 VVS-----WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
            +      +  +I     +G+  DAVAL   M      PD+    SVLSAC   G +E G
Sbjct: 609 KIEAKLEHYACVIGMLSRAGRFADAVALMEVMPEE---PDAKILSSVLSACHMHGEVELG 665

Query: 420 RYYFKIMTEQYKLVP-RIEHF 439
           +   K+  +  +L P + EH+
Sbjct: 666 K---KVADKLLELEPHKAEHY 683



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLY--LQMEVHGIEPNAISVASVLPAC-GDLSALLLGR 319
           +L  WN ++A  +     A+A+ +   L     G+ P+  ++   L +C GD      GR
Sbjct: 29  SLPQWNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRGDD-----GR 83

Query: 320 KIHRYVERKKL-QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           ++H    +  L   +  + N+LV MY +CG + +A  VF+ M  +++VSW ++++A    
Sbjct: 84  QVHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADP 143

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ-YKLVPRIE 437
            +G +      + L     PD    V+VL  C+     E GR    +  +  +   PR+ 
Sbjct: 144 RRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVS 203

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMP 463
           +   LVD+  + G++ +A     + P
Sbjct: 204 NV--LVDMYAKCGEMADAECAFLEAP 227


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 170/512 (33%), Positives = 278/512 (54%), Gaps = 50/512 (9%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG---FDPDCYTYPCVLKACSG 142
           +   I N N   +NV IR +  +    DA+  YK M   G     PD +TYP + K C+ 
Sbjct: 34  ILKGIENPNAFSWNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCAD 93

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
                +G  I   V K+ L+      N  + M+  CG ++ AR+V ++ P +D+V+WN +
Sbjct: 94  LRLNSLGHMILGHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNCL 153

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS---------------------V 241
           + GY + G  ++A++V + MES  +KPD  TM  L+ S                     +
Sbjct: 154 INGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGL 213

Query: 242 TNTSP-------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
             T P                         E    V ++F  ++ K++V WN MI     
Sbjct: 214 RMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQ 273

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
                +A+ L+ +M+    +P+ I++   L AC  L AL +G  IHRY+E+  L  N+ L
Sbjct: 274 AKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVAL 333

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
             +LVDMYAKCG+++EA  VF  ++ ++ +++T++I    + G    A++ F++M+ +G+
Sbjct: 334 GTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGI 393

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PD I F+ +LSAC H G+++ GR YF  M  ++ L P+++H++ +VDLLGRAG +EEA 
Sbjct: 394 APDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEAD 453

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
            L++ MPME +  +WG+L+  C ++ N+ +G  AA  +  L P+ SG YVLL  +Y +A 
Sbjct: 454 KLMESMPMEADAAVWGALLFGCRMHGNVKLGEKAAKKLLELDPSDSGIYVLLDGMYGEAN 513

Query: 517 RWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
            W D KR R+ MN +G++K+PG +S+E+N  V
Sbjct: 514 MWEDAKRARRMMNERGVEKIPGCSSIEVNGIV 545



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 186/432 (43%), Gaps = 63/432 (14%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           KL  +++   H+H N SI +     + +CG+M + R VFDE   +++V +N LI  Y   
Sbjct: 109 KLRLELV--SHVH-NASIHM-----FASCGEMENARKVFDESPVRDLVSWNCLINGYKKI 160

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
                A+ VYK M   G  PD  T   ++ +C+    L  G + +  V   GL   +   
Sbjct: 161 GEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLA 220

Query: 169 NGLVAMYGKCGCLKEARRV-------------LNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           N L+ M+ KCG + EARR+              +DM  KDVV WN+M+ G  Q  R  +A
Sbjct: 221 NALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDA 280

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENV--------------------LSVKEM 255
           L + +EM++    PD  TM   L + +     +V                     S+ +M
Sbjct: 281 LALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDM 340

Query: 256 FLKLDN-------------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
           + K  N             +N +++  +I   A +   + A+  + +M   GI P+ I+ 
Sbjct: 341 YAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITF 400

Query: 303 ASVLPACGDLSALLLGRK-IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
             +L AC     +  GR    +   R  L P L+  + +VD+  + G L EA  + + M 
Sbjct: 401 IGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMP 460

Query: 362 CQ-DVVSWTSMISAYGMSGQ---GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
            + D   W +++    M G    G  A    +K L+     DS  +V +      A + E
Sbjct: 461 MEADAAVWGALLFGCRMHGNVKLGEKA----AKKLLELDPSDSGIYVLLDGMYGEANMWE 516

Query: 418 EGRYYFKIMTEQ 429
           + +   ++M E+
Sbjct: 517 DAKRARRMMNER 528


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 181/592 (30%), Positives = 296/592 (50%), Gaps = 69/592 (11%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N +L  Y   K  +   A+ + +   H N      L+ T      + D   +F  +T ++
Sbjct: 45  NHLLTAYG--KAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRD 102

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNM--SVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           +V +N +I  +     +  A+ VY  +  +     P   T   ++ A S      +G Q 
Sbjct: 103 IVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQF 162

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGK-------------------------------CGCL 181
           HC ++++G   N F G+ LV MY K                               C  +
Sbjct: 163 HCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMV 222

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
           +EARR+   M  +D +TW +MV G+ QNG   EAL++ R M    I  D  T  S+L + 
Sbjct: 223 EEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTAC 282

Query: 242 TNTSP-----------------ENVL-------------SVK---EMFLKLDNKNLVSWN 268
              S                  +NV              S+K    +F ++  KN++SW 
Sbjct: 283 GALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWT 342

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
            +I  Y  N    EAV ++ +M+  GI+P+  ++ SV+ +C +L++L  G + H      
Sbjct: 343 ALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVS 402

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
            L   + + NALV +Y KCGS+ +A  +FD+M   D VSWT+++S Y   G+  + + LF
Sbjct: 403 GLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLF 462

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
            KML  G+ PD + F+ VLSACS AG +E+GR YF  M + + +VP  +H+ C++DL  R
Sbjct: 463 EKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSR 522

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508
           +GK++EA + IKQMPM P+   WG+L++AC L  +M+IG  AA+++  + P     YVLL
Sbjct: 523 SGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLL 582

Query: 509 SNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRSSKC 559
            +++A  G+W +V ++R+ M  + +KK PG S ++  ++V I +   +S  C
Sbjct: 583 CSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPC 634


>gi|297834340|ref|XP_002885052.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330892|gb|EFH61311.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 652

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 179/533 (33%), Positives = 287/533 (53%), Gaps = 44/533 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++H  ++    L  +P     L+  Y  CG M     VF   + ++V  +N LI  +V 
Sbjct: 79  QQIHGFMVRKGFLDDSPRAVTSLVNMYAKCGLMRRAVLVFGG-SERDVFGYNALISGFVV 137

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG--LQIHCSVVKVGLDYNL 165
           N    DA+ +Y+ M   G  PD YT+P +LK   GS+++ V    ++H    K+G   + 
Sbjct: 138 NGSPLDAMDMYREMRAKGILPDKYTFPSLLK---GSDAMEVSDVKKVHALAFKLGFVSDC 194

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKD-VVTWNSMVAGYAQNGRFDEALDVCREMES 224
           + G+ LV  Y K   +++A++V +++P +D  V WN++V GY+   RF++AL V  +M  
Sbjct: 195 YVGSALVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSHIFRFEDALIVFSKMRE 254

Query: 225 LRIKPDADTMASLLPSVT------NTSPENVLSVK------------------------- 253
             +     T+ S+L S T      N    + L+VK                         
Sbjct: 255 EGVAMSRHTITSVLSSFTVSGDLDNGRSIHGLAVKMGFDSGIVVSNALIDLYGKSKWLEE 314

Query: 254 --EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
              +F  +D ++L +WN ++ V+         + L+  M   GI P+ +++ +VLP CG 
Sbjct: 315 ANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFETMLCSGIRPDIVTLTTVLPTCGR 374

Query: 312 LSALLLGRKIHRYVERKKL----QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           L++L  GR+IH Y+    L      N  + N+L+DMY KCG L +AR VFD MR +D  S
Sbjct: 375 LASLKQGREIHGYMIASGLLNRKSSNGFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSAS 434

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W  MI+ YG+   G  A+ +FS M  +G+ PD I FV +L ACSH+G + EGR +   M 
Sbjct: 435 WNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHSGFVNEGRNFLAQME 494

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
             Y ++P  +H+AC++D+LGRA K+EEAYDL   MP+  N  +W S++++C L+ N D+ 
Sbjct: 495 TLYNILPTSDHYACVIDMLGRADKLEEAYDLAISMPICDNPVVWRSILSSCRLHGNKDLA 554

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           ++A   ++ L P   G YVL+SN+Y +A ++ +V  VR  M  + +KK PG S
Sbjct: 555 VVAGKRLYELEPEHCGVYVLMSNVYVEAKKYEEVLDVRDTMKEQNVKKTPGCS 607



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 175/400 (43%), Gaps = 45/400 (11%)

Query: 21  VLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQM 80
           +L  +YT  S    +D ++    +  +KK+HA +       S+  +G  L+ +Y     +
Sbjct: 156 ILPDKYTFPSLLKGSDAME----VSDVKKVHA-LAFKLGFVSDCYVGSALVTSYSKFMSV 210

Query: 81  VDTRHVFDEITNKN-VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA 139
            D + VFDE+ +++  V +N L+  Y + + + DAL V+  M   G     +T   VL +
Sbjct: 211 EDAQKVFDELPDRDDSVLWNALVNGYSHIFRFEDALIVFSKMREEGVAMSRHTITSVLSS 270

Query: 140 CSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTW 199
            + S  L  G  IH   VK+G D  +   N L+ +YGK   L+EA  +   M  +D+ TW
Sbjct: 271 FTVSGDLDNGRSIHGLAVKMGFDSGIVVSNALIDLYGKSKWLEEANSIFEAMDERDLFTW 330

Query: 200 NSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS------------------- 240
           NS++  +   G  D  L +   M    I+PD  T+ ++LP+                   
Sbjct: 331 NSVLCVHDYCGDHDGTLALFETMLCSGIRPDIVTLTTVLPTCGRLASLKQGREIHGYMIA 390

Query: 241 --VTNTSPENVL---SVKEMFLKLDN-------------KNLVSWNVMIAVYANNSMPAE 282
             + N    N     S+ +M++K  +             K+  SWN+MI  Y   S    
Sbjct: 391 SGLLNRKSSNGFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGEL 450

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER-KKLQPNLRLENALV 341
           A+D++  M   G++P+ I+   +L AC     +  GR     +E    + P       ++
Sbjct: 451 ALDMFSCMCRAGVKPDEITFVGLLQACSHSGFVNEGRNFLAQMETLYNILPTSDHYACVI 510

Query: 342 DMYAKCGSLTEARTVFDQMR-CQDVVSWTSMISAYGMSGQ 380
           DM  +   L EA  +   M  C + V W S++S+  + G 
Sbjct: 511 DMLGRADKLEEAYDLAISMPICDNPVVWRSILSSCRLHGN 550



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 150/339 (44%), Gaps = 30/339 (8%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   + +H  + +     S   +   L+  YG    + +   +F+ +  +++  +N ++
Sbjct: 276 DLDNGRSIHG-LAVKMGFDSGIVVSNALIDLYGKSKWLEEANSIFEAMDERDLFTWNSVL 334

Query: 103 RSYVNNYL--YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
              V++Y   +   L +++ M   G  PD  T   VL  C    SL  G +IH  ++  G
Sbjct: 335 --CVHDYCGDHDGTLALFETMLCSGIRPDIVTLTTVLPTCGRLASLKQGREIHGYMIASG 392

Query: 161 L----DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           L      N F  N L+ MY KCG L++AR V + M  KD  +WN M+ GY      + AL
Sbjct: 393 LLNRKSSNGFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELAL 452

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNT----SPENVLSVKEMFLKLDNKNLVSWNVMIA 272
           D+   M    +KPD  T   LL + +++       N L+  E    +   +   +  +I 
Sbjct: 453 DMFSCMCRAGVKPDEITFVGLLQACSHSGFVNEGRNFLAQMETLYNILPTS-DHYACVID 511

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC-----GDLSALLLGRKIHRYVER 327
           +        EA DL + M    I  N +   S+L +C      DL A++ G++++     
Sbjct: 512 MLGRADKLEEAYDLAISMP---ICDNPVVWRSILSSCRLHGNKDL-AVVAGKRLY----- 562

Query: 328 KKLQP-NLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
            +L+P +  +   + ++Y +     E   V D M+ Q+V
Sbjct: 563 -ELEPEHCGVYVLMSNVYVEAKKYEEVLDVRDTMKEQNV 600



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 9/180 (5%)

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKK-LQPNLRLENALVDMYAKCGSLTEARTVF 357
           A S+A+ L  C      + G++IH ++ RK  L  + R   +LV+MYAKCG +  A  VF
Sbjct: 60  ATSIAT-LQRCAQRKDSVSGQQIHGFMVRKGFLDDSPRAVTSLVNMYAKCGLMRRAVLVF 118

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
                +DV  + ++IS + ++G   DA+ ++ +M   G+ PD   F S+L   S A  + 
Sbjct: 119 GGSE-RDVFGYNALISGFVVNGSPLDAMDMYREMRAKGILPDKYTFPSLLKG-SDAMEVS 176

Query: 418 EGRYYFKIMTEQYKL--VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
           + +   K+    +KL  V      + LV    +   VE+A  +  ++P   +  +W +LV
Sbjct: 177 DVK---KVHALAFKLGFVSDCYVGSALVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALV 233


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 189/577 (32%), Positives = 294/577 (50%), Gaps = 72/577 (12%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+ T K LH+ + I   +  +       +  Y  CG++   R  F +I++ NV  FN +I
Sbjct: 23  DLSTGKSLHS-LYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAII 81

Query: 103 RSYVN----------------------NYL---YYD------ALHVYKNMSVHGFDPDCY 131
            +Y                        N L   Y D      AL ++  M   G D D +
Sbjct: 82  AAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXF 141

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
           T   V+ AC     L+   Q+H   V  G D  +   N L+  YGK G L +A+RV   M
Sbjct: 142 TLSAVITACCDDVGLIG--QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGM 199

Query: 192 PS-KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT-------- 242
              +D V+WNSM+  Y Q+    +AL + +EM    +  D  T+AS+L + T        
Sbjct: 200 GGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGG 259

Query: 243 --------------------------NTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                     +     +   +++F ++   +LV WN M++ Y+ 
Sbjct: 260 LQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQ 319

Query: 277 NSMPAE-AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN-L 334
           N    E A++ + QM+  G  PN  S   V+ AC +LS+   G++IH    +  +  N +
Sbjct: 320 NEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRI 379

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            ++NAL+ MY+KCG+L +AR +FD+M   + VS  SMI+ Y   G   +++ LF  ML  
Sbjct: 380 SVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLER 439

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
            + P SI F+SVLSAC+H G +EEG  YF +M E++ + P  EH++C++DLLGRAGK+ E
Sbjct: 440 QIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSE 499

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A +LI +MP  P    W SL+ AC  + N+++ + AA+ +  L P+ +  YV+LSN+YA 
Sbjct: 500 AENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYAS 559

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           AGRW +V  VRKFM  +G+KK PG S +E+  ++ + 
Sbjct: 560 AGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVF 596



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 173/407 (42%), Gaps = 66/407 (16%)

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND----- 190
           +LK C     L  G  +H   +K  +  + +  N  + +Y KCG L  AR+   D     
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 191 --------------------------MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
                                     +P  D+V++N++++ YA  G    AL +   M  
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 225 LRIKPDADTMASLLPS--------------VTNTSPENVLSVKEMFLKLDNKN------- 263
           + +  D  T+++++ +                ++  ++ +SV    L    KN       
Sbjct: 134 MGLDMDXFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAK 193

Query: 264 -----------LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
                       VSWN MI  Y  +   ++A+ L+ +M   G+  +  ++ASVL A   L
Sbjct: 194 RVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCL 253

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC-GSLTEARTVFDQMRCQDVVSWTSM 371
             L  G + H  + +     N  + + L+D+Y+KC G +++ R VF+++   D+V W +M
Sbjct: 254 EDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTM 313

Query: 372 ISAYGMSGQGY-DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           +S Y  + +   DA+  F +M   G  P+  +FV V+SACS+     +G+    +  +  
Sbjct: 314 VSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSD 373

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
               RI     L+ +  + G +++A  L  +M  E N     S++A 
Sbjct: 374 IPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNSMIAG 419


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 189/577 (32%), Positives = 294/577 (50%), Gaps = 72/577 (12%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+ T K LH+ + I   +  +       +  Y  CG++   R  F +I++ NV  FN +I
Sbjct: 23  DLSTGKSLHS-LYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAII 81

Query: 103 RSYVN----------------------NYL---YYD------ALHVYKNMSVHGFDPDCY 131
            +Y                        N L   Y D      AL ++  M   G D D +
Sbjct: 82  AAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGF 141

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
           T   V+ AC     L+   Q+H   V  G D  +   N L+  YGK G L +A+RV   M
Sbjct: 142 TLSAVITACCDDVGLIG--QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGM 199

Query: 192 PS-KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT-------- 242
              +D V+WNSM+  Y Q+    +AL + +EM    +  D  T+AS+L + T        
Sbjct: 200 GGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGG 259

Query: 243 --------------------------NTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                     +     +   +++F ++   +LV WN M++ Y+ 
Sbjct: 260 LQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQ 319

Query: 277 NSMPAE-AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN-L 334
           N    E A++ + QM+  G  PN  S   V+ AC +LS+   G++IH    +  +  N +
Sbjct: 320 NEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRI 379

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            ++NAL+ MY+KCG+L +AR +FD+M   + VS  SMI+ Y   G   +++ LF  ML  
Sbjct: 380 SVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLER 439

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
            + P SI F+SVLSAC+H G +EEG  YF +M E++ + P  EH++C++DLLGRAGK+ E
Sbjct: 440 QIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSE 499

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A +LI +MP  P    W SL+ AC  + N+++ + AA+ +  L P+ +  YV+LSN+YA 
Sbjct: 500 AENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYAS 559

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           AGRW +V  VRKFM  +G+KK PG S +E+  ++ + 
Sbjct: 560 AGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVF 596



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 173/407 (42%), Gaps = 66/407 (16%)

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND----- 190
           +LK C     L  G  +H   +K  +  + +  N  + +Y KCG L  AR+   D     
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 191 --------------------------MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
                                     +P  D+V++N++++ YA  G    AL +   M  
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 225 LRIKPDADTMASLLPS--------------VTNTSPENVLSVKEMFLKLDNKN------- 263
           + +  D  T+++++ +                ++  ++ +SV    L    KN       
Sbjct: 134 MGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAK 193

Query: 264 -----------LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
                       VSWN MI  Y  +   ++A+ L+ +M   G+  +  ++ASVL A   L
Sbjct: 194 RVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCL 253

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC-GSLTEARTVFDQMRCQDVVSWTSM 371
             L  G + H  + +     N  + + L+D+Y+KC G +++ R VF+++   D+V W +M
Sbjct: 254 EDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTM 313

Query: 372 ISAYGMSGQGY-DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           +S Y  + +   DA+  F +M   G  P+  +FV V+SACS+     +G+    +  +  
Sbjct: 314 VSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSD 373

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
               RI     L+ +  + G +++A  L  +M  E N     S++A 
Sbjct: 374 IPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNSMIAG 419


>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 490

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 166/496 (33%), Positives = 272/496 (54%), Gaps = 40/496 (8%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           L ++HA  + +   HSN  +    +    +  Q+     +F+   + N++ FN +I+++ 
Sbjct: 25  LPQIHAHFLRHGLHHSNQILS-HFVSVCTSLHQIPYATTIFNHTHHPNILLFNSIIKAHS 83

Query: 107 NNYLYYDALHVYKNMSV-HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
           +   ++ + H +  M + H   PD +T+P +LKA S      +G  +H  V  +G   + 
Sbjct: 84  SFPPFHQSFHFFNLMKMTHNILPDNFTFPPLLKATSYLRDYDLGQCLHAHVTALGFYRHS 143

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
               GL+ +Y  CG +++A +V ++M  ++VV WN M+ G+ + G  +  L         
Sbjct: 144 PVEIGLLEVYSNCGKMEDANKVFDEMLHREVVVWNIMINGFCKMGDLEIGL--------- 194

Query: 226 RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285
                                       ++F ++  +++VSWN+MI+  A      EA  
Sbjct: 195 ----------------------------KLFKRMGQRSVVSWNLMISCLAQRKKDGEAFG 226

Query: 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL-QPNLRLENALVDMY 344
           ++ +M   G EP+  ++ +VLP C  L  +  G  IH Y + K L +  + + N+LVD Y
Sbjct: 227 IFREMLEQGFEPDDATLVTVLPVCARLGDVDAGEWIHSYADGKGLLRKVISVGNSLVDFY 286

Query: 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404
            KCG+L  A  VF++M  ++VVSW +MIS  G++G+G   V LF KM   G+ P    FV
Sbjct: 287 CKCGNLEAAWKVFNEMTKKNVVSWNAMISGLGLNGKGELGVELFEKMARKGVTPSDSTFV 346

Query: 405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM 464
            VL+ C+HAG +++GR  F  MT ++KL P++EH+ C+VDLLGR G V+EAYDLI+ MP+
Sbjct: 347 GVLACCAHAGFVDKGREIFDSMTVKFKLSPKLEHYGCVVDLLGRCGHVKEAYDLIRNMPL 406

Query: 465 EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV 524
            PN  +WG+L++AC  + + ++  +AA  +  L P  SG YVLLSN+YA+  +W +V++V
Sbjct: 407 MPNAALWGALLSACRTHGDREVAEIAAKELVRLEPGNSGNYVLLSNVYAEERKWNEVEKV 466

Query: 525 RKFMNSKGIKKMPGAS 540
           R  M   GIKK PG S
Sbjct: 467 RVLMQGVGIKKNPGQS 482


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 177/515 (34%), Positives = 276/515 (53%), Gaps = 36/515 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  C +  D   VF  I +KNV  + +++ ++  N  +      ++ M + G +P 
Sbjct: 16  LIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPG 75

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
                  L AC+ +  + +G  I  +++  G++        LV++YGK G   +A  V  
Sbjct: 76  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFL 135

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
            M  +DVV W++MVA YA+NG   EAL + R+M+   + P+  T+ S L +         
Sbjct: 136 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 195

Query: 241 -----------------VTNTSPEN-------VLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                            V  T+  N       + +  E F ++  KN+V+W+ + A YA 
Sbjct: 196 GALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYAR 255

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR--YVERKKLQPNL 334
           N    +A+ +  +M++ G+ PN+ +  SVL AC  ++AL  GR+IH   +V    L+ ++
Sbjct: 256 NDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDV 315

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            +  ALV+MY+KCG+L  A  +FD++   D+V W S+I+     GQ   A+ LF +M + 
Sbjct: 316 YVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLE 375

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           GL P  I F SVL ACSHAG+L++GR +F      + + P  EHF C+VDLLGRAG + +
Sbjct: 376 GLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVD 435

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           + DL+  MP EP+   W + + AC  Y NMD  I AA+++F L P +   YVLLSN+YAK
Sbjct: 436 SEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNMYAK 495

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           AGRW DV R+R+ M      K  G S +E+ D+V 
Sbjct: 496 AGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVH 530



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 176/353 (49%), Gaps = 35/353 (9%)

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           ++G   N F  N L+ +Y KC    +A  V + + SK+V +W  M+A +A+N  FD    
Sbjct: 3   ELGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWL 62

Query: 218 VCREMESLRIKPDADTMASLLPSVTNT------------------SPENVLSV------- 252
             R M    I P    ++  L + T+                     E+++         
Sbjct: 63  FFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYG 122

Query: 253 --------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
                     +FL++ ++++V+W+ M+A YA N  P EA+ L+ QM++ G+ PN +++ S
Sbjct: 123 KLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVS 182

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
            L AC  L  L  G  +H+ VE + +Q  + +  ALV++Y KCG +  A   F Q+  ++
Sbjct: 183 GLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKN 242

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-RYYF 423
           VV+W+++ +AY  + +  DA+ +  +M + GL P+S  FVSVL AC+    L++G R + 
Sbjct: 243 VVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHE 302

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
           +I      L   +     LV++  + G +  A ++  ++    +  +W SL+A
Sbjct: 303 RIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIA-HLDLVLWNSLIA 354



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 162/376 (43%), Gaps = 41/376 (10%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           I+   +     +   L+  YG  G   D   VF  +++++VV ++ ++ +Y  N    +A
Sbjct: 102 ILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREA 161

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
           L +++ M + G  P+  T    L AC+    L  G  +H  V   G+   +  G  LV +
Sbjct: 162 LGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNL 221

Query: 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
           YGKCG ++ A      +  K+VV W+++ A YA+N R  +A+ V   M+   + P++ T 
Sbjct: 222 YGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTF 281

Query: 235 ASLLPSVTNTSP-----------------------------------ENVLSVKEMFLKL 259
            S+L +    +                                     N+     MF K+
Sbjct: 282 VSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKI 341

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
            + +LV WN +IA  A +    +A++L+ +M + G++P  I+  SVL AC     L  GR
Sbjct: 342 AHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGR 401

Query: 320 K-IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA--- 374
           K    ++    + P       +VD+  + G + ++  +   M  +   V+W + + A   
Sbjct: 402 KHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRT 461

Query: 375 -YGMSGQGYDAVALFS 389
              M G  + A  LF 
Sbjct: 462 YRNMDGAIWAAENLFQ 477



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 162/344 (47%), Gaps = 27/344 (7%)

Query: 21  VLSTQYTLLSG-DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQ 79
           V   + TL+SG DAC  +     D+++   +H Q +  Q + S   +G  L+  YG CG+
Sbjct: 173 VAPNKVTLVSGLDACASL----GDLRSGALMH-QRVEAQGIQSGVVVGTALVNLYGKCGR 227

Query: 80  MVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA 139
           +      F +I  KNVV ++ +  +Y  N    DA+ V   M + G  P+  T+  VL A
Sbjct: 228 IEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDA 287

Query: 140 CSGSNSLLVGLQIH--CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
           C+   +L  G +IH    V+  GL+ +++    LV MY KCG L  A  + + +   D+V
Sbjct: 288 CAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLV 347

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
            WNS++A  AQ+G+ ++AL++   M    ++P   T  S+L + ++    +    ++ F+
Sbjct: 348 LWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLD--QGRKHFV 405

Query: 258 KLDNKNLV-----SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
                + +      +  M+ +        ++ DL L M     EP+ ++  + L AC   
Sbjct: 406 SFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMP---FEPHPVAWMAFLGACRTY 462

Query: 313 ----SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
                A+     + +   RK+  P + L N    MYAK G  ++
Sbjct: 463 RNMDGAIWAAENLFQLDPRKR-APYVLLSN----MYAKAGRWSD 501



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 38/221 (17%)

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK-M 391
           N  L N L+D+Y KC    +A  VF  ++ ++V SWT M++A+    + +D   LF + M
Sbjct: 9   NRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFA-ENRDFDRCWLFFRGM 67

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGR-----------------------YYFKI--M 426
           L+ G+ P  +     LSAC+ A  +  GR                        Y K+   
Sbjct: 68  LLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHC 127

Query: 427 TEQYKLVPRIEH-----FACLVDLLGRAGKVEEAYDLIKQMPME---PNERIWGSLVAAC 478
           T+   +  R+ H     ++ +V    R G   EA  L +QM ++   PN+    S + AC
Sbjct: 128 TDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDAC 187

Query: 479 CLYSNMDIGILAADHIFHLAPNQSGYYV--LLSNIYAKAGR 517
               ++  G L    +      QSG  V   L N+Y K GR
Sbjct: 188 ASLGDLRSGALMHQRV-EAQGIQSGVVVGTALVNLYGKCGR 227


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 175/474 (36%), Positives = 272/474 (57%), Gaps = 39/474 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L++ Y   G +   R +FDE + K+VV +  +I  Y  N    +A+ ++ +M      P+
Sbjct: 193 LIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPN 252

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   +L ACS      +G  +H  + +  +  +L   N ++ MY KCGCL  AR + N
Sbjct: 253 EVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFN 312

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
           +M  +DV +W S++ GYA+NG                                     ++
Sbjct: 313 NMERRDVFSWTSLLNGYAKNG-------------------------------------DL 335

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPA 308
            S +++F ++  +N+VSWN MIA Y+ NS P EA++L+  M +V G+ P   ++  VL A
Sbjct: 336 GSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSA 395

Query: 309 CGDLSALLLGRKIH-RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
            G L  L +G++IH  +V +  +Q +L L+NA++DMYAKCGS+  A  +F  M  +++VS
Sbjct: 396 SGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVS 455

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W SMISAY   G    A+ LF +M+ SGL PD I F+ VLSACS+ G + EG+ +F+ M 
Sbjct: 456 WNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESME 515

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
             + + P+ EH+AC+VDLL R G ++EAY+LI +MPME +E  WG+L+ AC  + N+++ 
Sbjct: 516 NCFGVEPKREHYACMVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMA 575

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
            LA + +  L P  SG Y LL+NI A   +W DV+ VR+ M  +G+KK+PG S+
Sbjct: 576 KLAGEKLLELDPEDSGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSL 629



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 90/166 (54%)

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F + +  N   WN MI  Y   + P+     + QM  +  E ++ S    L ACG  + 
Sbjct: 108 IFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAE 167

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
            ++G  +H  + ++    +L ++N L+  Y + G L  AR +FD+   +DVV+WT+MI+ 
Sbjct: 168 KIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMING 227

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           Y  +    +A+ALF+ ML S + P+ +  +++LSACS  G  E G+
Sbjct: 228 YARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGK 273


>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
          Length = 499

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 175/500 (35%), Positives = 275/500 (55%), Gaps = 40/500 (8%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD-TRHVFDEITNKNVVFFNVLI 102
           ++  K+LHA +I +  LH   +   KL+  Y +    +   R +FD + + +   +N + 
Sbjct: 1   MQEAKRLHAHLITSG-LHQQENHLRKLITLYTSSSSSLHHARLLFDAVYHPSTYLYNTMF 59

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
           R Y  +     AL ++++M  HG  PD YT+P +LKACS    LL G ++HC  +K GL 
Sbjct: 60  RVYAASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKACSALAHLLKGQELHCQALKFGLG 119

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++F  N L+ +YG    +  ARRV + M  +D+ +W +++A YA +   + A  V  EM
Sbjct: 120 GHVFVENSLIHLYGSNSRMDSARRVFDGMGYRDIASWTTLLACYANSCSVEAARKVFDEM 179

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                                  PE              +++VS++ M+A Y   +   E
Sbjct: 180 -----------------------PE--------------RSVVSYSAMLAAYVRGNRFRE 202

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV-ERKKLQPNLRLENALV 341
           A++L+ ++    IEP+   V SVL AC +L AL +GR ++ +V   K    + R+  AL+
Sbjct: 203 ALELFRELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSFVCHSKGDYVDSRIATALI 262

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           DM+ KCGS+  A  VF+  + + V  WT+M+S   M G G   +  F KM+ SG+ PD +
Sbjct: 263 DMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGIKPDEV 322

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
            FV++LS CSH+GL+ EG YYF  M   + + P +EHF C+VDLLGRAG +++A  LI +
Sbjct: 323 TFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLIDQAMQLISE 382

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
           MP EPN  IWG+L+ AC +Y N+++G LAA  +    P     Y+ L ++Y +AGRW +V
Sbjct: 383 MPFEPNAAIWGALLNACRVYKNVEVGELAAQWLIKDEPWNGALYMTLLSLYREAGRWDEV 442

Query: 522 KRVRKFMNSKGIKKMPGASV 541
           ++V+  M   G +K PG S+
Sbjct: 443 EKVKLKMKEVGCRKGPGCSL 462


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 171/491 (34%), Positives = 267/491 (54%), Gaps = 56/491 (11%)

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           AL+ Y  M     + D +  P VLKACS  +   +G +IH   VK GL  ++F  N L+ 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMV----------------------AGYAQNGR 211
           MY +CG L  AR + + M  +DVV+W++M+                      AGY +   
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSP------------------------- 246
            +E   +   M    + P+  TM SL+ S                               
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATA 272

Query: 247 --------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                     + S + +F  + NK++++W  MI+ YA  +    A  L++QM  +G+ PN
Sbjct: 273 LVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPN 332

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
            +++ S+L  C    AL +G+  H Y++++ ++ ++ L+ AL+DMYAKCG ++ A+ +F 
Sbjct: 333 ELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFS 392

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
           +   +D+ +W  M++ YGM G G  A+ LF++M   G+ P+ I F+  L ACSHAGL+ E
Sbjct: 393 EAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVE 452

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           G+  F+ M   + LVP++EH+ C+VDLLGRAG ++EAY +I+ MP+ PN  IWG+++AAC
Sbjct: 453 GKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAAC 512

Query: 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
            ++ N ++G LAA  +  L P   GY VL+SNIYA A RW DV  +RK +   GIKK PG
Sbjct: 513 KIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPG 572

Query: 539 -ASVEMNDQVQ 548
            +S+E+N  V 
Sbjct: 573 MSSIEVNGLVH 583



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 167/364 (45%), Gaps = 61/364 (16%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYY----------------- 112
           LM+ Y  CG +V  R +FD+++ ++VV ++ +IR+Y+   L+Y                 
Sbjct: 150 LMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYIT--LFYGFSQRSIVSWTAMIAGY 207

Query: 113 -------DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
                  +   ++  M      P+  T   ++ +C    ++ +G ++H  +++ G   +L
Sbjct: 208 IRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSL 267

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
                LV MYGKCG ++ AR + + M +KDV+TW +M++ YAQ    D A  +  +M   
Sbjct: 268 ALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDN 327

Query: 226 RIKPDADTMASLLP-SVTNTSPE--------------------------------NVLSV 252
            ++P+  TM SLL     N + +                                ++   
Sbjct: 328 GVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGA 387

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           + +F +  ++++ +WNVM+A Y  +    +A+ L+ +ME  G++PN I+    L AC   
Sbjct: 388 QRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHA 447

Query: 313 SALLLGRKI-HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTS 370
             ++ G+ +  + +    L P +     +VD+  + G L EA  + + M    ++  W +
Sbjct: 448 GLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGA 507

Query: 371 MISA 374
           M++A
Sbjct: 508 MLAA 511



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 133/267 (49%), Gaps = 11/267 (4%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LHA I+ N     + ++   L+  YG CG++   R +FD + NK+V+ +  +I +Y  
Sbjct: 252 KRLHAYILRNG-FGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQ 310

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                 A  ++  M  +G  P+  T   +L  C+ + +L +G   H  + K G++ ++  
Sbjct: 311 ANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVIL 370

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L+ MY KCG +  A+R+ ++   +D+ TWN M+AGY  +G  ++AL +  EME+L +
Sbjct: 371 KTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGV 430

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLVSWNVMIAVYANNSMPAE 282
           KP+  T    L + ++     V+  K +F K+ +       +  +  M+ +     +  E
Sbjct: 431 KPNDITFIGALHACSHAGL--VVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDE 488

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPAC 309
           A   Y  +E   + PN     ++L AC
Sbjct: 489 A---YKMIESMPVTPNIAIWGAMLAAC 512



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 113/224 (50%), Gaps = 26/224 (11%)

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
            S P  A++ Y  M    IE ++  + SVL AC  +S   +G++IH +  +  L  ++ +
Sbjct: 87  ESHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFV 146

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA-----YGMSGQ----------G 381
            NAL+ MY++CGSL  AR +FD+M  +DVVSW++MI A     YG S +          G
Sbjct: 147 VNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAG 206

Query: 382 Y-------DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-RYYFKIMTEQYKLV 433
           Y       +   LF +M+   + P+ I  +S++ +C   G ++ G R +  I+   + + 
Sbjct: 207 YIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMS 266

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             +     LVD+ G+ G++  A  +   M    +   W ++++A
Sbjct: 267 LALA--TALVDMYGKCGEIRSARAIFDSMK-NKDVMTWTAMISA 307


>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
           sativa Japonica Group]
          Length = 503

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 154/391 (39%), Positives = 232/391 (59%), Gaps = 38/391 (9%)

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQN 209
           Q+H  +V+ G   +      LV  Y  CG +  ARRV ++   S DVV+WN M+ GY ++
Sbjct: 96  QLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKS 155

Query: 210 GRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNV 269
           G      D+ R                                +E+F  +  +N+VSW +
Sbjct: 156 G------DLAR-------------------------------ARELFDVMPGRNVVSWTM 178

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           +I  YA    P EA++++ +M+V GIEP+ +++ SVL ACGDL  + LG  +HR+V R+ 
Sbjct: 179 VIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRG 238

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           L   + L NA++DMY KCGS+ +A  VF+ M  + +V+WT+MI+ + + G G +AV LF 
Sbjct: 239 LCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGLEAVELFR 298

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           +M    + P+ I F++VLS CSH GL + GR+YFK M  QYK+ PR+EH+ C++DLLGRA
Sbjct: 299 RMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRA 358

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G + EA  LI+ MP + N  IWG+L+AA   + + ++G  A  H+  L P+ SG Y+LLS
Sbjct: 359 GCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQALLHLIELEPHNSGNYILLS 418

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           NIYA+  RW  V+ +R  M  +G++ +PGAS
Sbjct: 419 NIYAEQERWDAVRELRISMRDRGLRNVPGAS 449



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 88/165 (53%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y   G +   R +FD +  +NVV + ++I +Y       +A+ V++ M V G +PD    
Sbjct: 152 YVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVAL 211

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             VL AC     + +G  +H  V++ GL   +   N ++ MY KCG +K+A  V   M  
Sbjct: 212 LSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQ 271

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238
           K +VTW +M+AG+A +G   EA+++ R ME   + P+  T  ++L
Sbjct: 272 KSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVL 316



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 89/193 (46%), Gaps = 5/193 (2%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y  CG +     VF+ +  K++V +  +I  +  + L  +A+ +++ M      P+  T+
Sbjct: 253 YVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITF 312

Query: 134 PCVLKACSGSNSLLVGLQIHCSVV-KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
             VL  CS      +G     ++V +  +   + +   ++ + G+ GCL EAR ++ DMP
Sbjct: 313 LAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMP 372

Query: 193 SK-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS 251
            K +   W +++A    +G  D  L     +  + ++P       LL ++     E   +
Sbjct: 373 FKANAAIWGALLAAARTHG--DTELGEQALLHLIELEPHNSGNYILLSNIY-AEQERWDA 429

Query: 252 VKEMFLKLDNKNL 264
           V+E+ + + ++ L
Sbjct: 430 VRELRISMRDRGL 442


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 177/512 (34%), Positives = 282/512 (55%), Gaps = 35/512 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS-VHGFDP 128
           L+  Y   G + D   VFD +  +++V +N ++  YV+N +   AL  ++ M+       
Sbjct: 161 LVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGH 220

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D       L AC   ++L +G +IH   ++ GL+ ++  G  LV MY KCG +  A  V 
Sbjct: 221 DSVGVIAALAACCLESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVF 280

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS--- 245
             MP + VVTWN M+ GYA N R  +A D   +M     + +  T  +LL +   T    
Sbjct: 281 AKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSL 340

Query: 246 ---------------PENVL---------------SVKEMFLKLDNKNLVSWNVMIAVYA 275
                          P  VL               S +++F ++ +K LVSWN MIA Y 
Sbjct: 341 FGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYM 400

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
              M  EA+ L+L++    + P+  ++ +V+PA   L ++   +++H Y+ +     +  
Sbjct: 401 YMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTL 460

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           + NA++ MYA+CG++  +R +FD+M  +DV+SW ++I  Y + GQG  A+ +F +M  SG
Sbjct: 461 IMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSG 520

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + P+   FVSVL+ACS +GL  EG   F  M ++Y ++P+IEH+ C+ DLLGRAG++ E 
Sbjct: 521 MEPNESTFVSVLTACSVSGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGELREV 580

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
              I+ MP+ P  RIWGSL+ A    +++DI   AA+ IF L  N +G YV+LS++YA A
Sbjct: 581 LRFIENMPIAPTSRIWGSLLTASRNKNDIDIAEYAAERIFQLEHNNTGCYVVLSSMYADA 640

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
           GRW DV+R+R  M  KG+++    S VE+N++
Sbjct: 641 GRWEDVERIRSLMKEKGLRRTEARSLVELNNK 672



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 145/510 (28%), Positives = 247/510 (48%), Gaps = 47/510 (9%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           K P  +T  K H +   ++ + S+ S    L+ ++ A G+M +    F  +T       N
Sbjct: 31  KEPPPRTRPK-HGEGGASRPISSSGSRPKSLILSHVAAGRMDEAADAFAGVTRPGAFLHN 89

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
           V+IR + +  L  DAL  Y+ M   G  PD +T+P VLK C+ + +L  G   H +V+K+
Sbjct: 90  VMIRGFADADLPLDALAAYRAMLDAGARPDRFTFPVVLKCCARAGALGEGRAAHAAVIKL 149

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           GL  +++  N LVA+Y K G + +A RV + MP++D+V+WN+MV GY  NG    AL   
Sbjct: 150 GLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALACF 209

Query: 220 REM-ESLRIKPD-----ADTMASLLPSVTNTSPE-------------------------- 247
           REM ++L++  D     A   A  L S      E                          
Sbjct: 210 REMNDALQVGHDSVGVIAALAACCLESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCK 269

Query: 248 --NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
             NV   + +F K+  + +V+WN MI  YA N  P +A D ++QM V G +   ++  ++
Sbjct: 270 CGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINL 329

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L AC    + L GR +H YV R+   P++ LE AL++MY K G +  +  +F Q+  + +
Sbjct: 330 LTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTL 389

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----Y 421
           VSW +MI+AY       +A+ALF ++L   L PD     +V+ A    G + + +    Y
Sbjct: 390 VSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSY 449

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
             K+      L+        ++ +  R G +  + ++  +MP + +   W +++    ++
Sbjct: 450 IVKLGYGDSTLI-----MNAVMHMYARCGNIVASREIFDKMPGK-DVISWNTIIIGYAIH 503

Query: 482 SNMDIGILAADHI--FHLAPNQSGYYVLLS 509
               I +   D +    + PN+S +  +L+
Sbjct: 504 GQGKIALEMFDEMKCSGMEPNESTFVSVLT 533



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 159/354 (44%), Gaps = 35/354 (9%)

Query: 56  INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDAL 115
           I   L  +  +G  L+  Y  CG +    +VF ++  + VV +N +I  Y  N    DA 
Sbjct: 249 IRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAF 308

Query: 116 HVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMY 175
             +  M V GF  +  T   +L AC+ + S L G  +H  VV+     ++     L+ MY
Sbjct: 309 DCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMY 368

Query: 176 GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA 235
           GK G ++ + ++   +  K +V+WN+M+A Y     + EA+ +  E+ +  + PD  TM 
Sbjct: 369 GKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMT 428

Query: 236 SLLPS---------------------------VTNTSPE------NVLSVKEMFLKLDNK 262
           +++P+                           + N          N+++ +E+F K+  K
Sbjct: 429 TVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGK 488

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH 322
           +++SWN +I  YA +     A++++ +M+  G+EPN  +  SVL AC        G K  
Sbjct: 489 DVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSVSGLEAEGWKEF 548

Query: 323 RYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTSMISA 374
             ++++  + P +     + D+  + G L E     + M        W S+++A
Sbjct: 549 NSMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFIENMPIAPTSRIWGSLLTA 602


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 168/518 (32%), Positives = 283/518 (54%), Gaps = 45/518 (8%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT--RHVFDEITNKNV 95
           LD   ++  +K++H  ++  + L  +  I  KL+RT    G  +D   R V + +  +N 
Sbjct: 57  LDDCINLNQIKQIHGHVL-RKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNP 115

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
             +  +IR Y     + +A+ +Y  M      P  +T+  +LKAC     L +G Q H  
Sbjct: 116 FLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQ 175

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
             ++     ++ GN ++ MY KCG +  AR+V ++MP +DV++W  ++A YA+ G  + A
Sbjct: 176 TFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESA 235

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
            D                                     +F  L  K++V+W  M+  +A
Sbjct: 236 AD-------------------------------------LFESLPTKDMVAWTAMVTGFA 258

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP--N 333
            N+ P EA++ + +ME  GI  + ++VA  + AC  L A     +  +  ++    P  +
Sbjct: 259 QNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDH 318

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML- 392
           + + +AL+DMY+KCG++ EA  VF  M  ++V S++SMI      G+  +A+ LF  M+ 
Sbjct: 319 VVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVT 378

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
            + + P+++ FV  L+ACSH+GL+++GR  F  M + + + P  +H+ C+VDLLGRAG++
Sbjct: 379 QTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRL 438

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
           +EA +LIK M +EP+  +WG+L+ AC +++N DI  +AA+H+F L P+  G Y+LLSN+Y
Sbjct: 439 QEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELEPDIIGNYILLSNVY 498

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS--VEMNDQVQ 548
           + AG WG V  VRK +  KG+KK P  S  V+ N Q+ 
Sbjct: 499 SSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMH 536


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 171/531 (32%), Positives = 285/531 (53%), Gaps = 63/531 (11%)

Query: 16  PVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG 75
           PV   VL+        +    + ++ P ++++   +A + +N HL               
Sbjct: 94  PVANSVLNMYGKCGDSETATTVFERMP-VRSVSSWNAMVSLNTHL--------------- 137

Query: 76  ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH--GFDPDCYTY 133
             G+M     +F+ + ++++V +N +I  Y  N L   AL ++  M +H     PD +T 
Sbjct: 138 --GRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM-LHESSMAPDEFTI 194

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             VL AC+   ++ +G Q+H  +++  + YN    N L++ Y K G ++ ARR+++    
Sbjct: 195 TSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSME 254

Query: 194 KD--VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS 251
            D  V+++ +++ GY + G          +MES R                         
Sbjct: 255 TDLNVISFTALLEGYVKIG----------DMESAR------------------------- 279

Query: 252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
             EMF  ++N+++V+W  MI  Y  N    EA+DL+  M   G EPN+ ++A+VL  C  
Sbjct: 280 --EMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCAS 337

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QDVVSWT 369
           L+ L  G++IH    R  L+ +  + NA++ MYA+ GS   AR +FDQ+ C  ++ ++WT
Sbjct: 338 LACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQV-CWRKETITWT 396

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           SMI A    GQG +AV LF +ML +G+ PD I +V VLSACSHAG + EG+ Y+  +  +
Sbjct: 397 SMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNE 456

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           +++ P + H+AC+VDLL RAG   EA + I++MP+EP+   WGSL++AC ++ N ++  L
Sbjct: 457 HQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAEL 516

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           AA+ +  + PN SG Y  ++N+Y+  GRW D  R+ K    K ++K  G S
Sbjct: 517 AAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFS 567



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/535 (24%), Positives = 234/535 (43%), Gaps = 117/535 (21%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           +   G++ D R VF E+  ++ V + V++        + +A+    +M+  GF P  +T 
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             VL +C+ + +  VG ++H  VVK+GL   +   N ++ MYGKCG  + A  V   MP 
Sbjct: 62  TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK 253
           + V +WN+MV+     GR D A                                     +
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLA-------------------------------------E 144

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDL 312
            +F  + ++++VSWN MIA Y  N + A+A+ L+ +M     + P+  ++ SVL AC +L
Sbjct: 145 SLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANL 204

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ------------- 359
             + +G+++H Y+ R ++  N ++ NAL+  YAK GS+  AR + DQ             
Sbjct: 205 GNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTA 264

Query: 360 --------------------MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
                               M  +DVV+WT+MI  Y  +G+  +A+ LF  M+  G  P+
Sbjct: 265 LLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPN 324

Query: 400 SIAFVSVLSACSHAGLLEEGRY-------------------------------YFKIMTE 428
           S    +VLS C+    L+ G+                                + + M +
Sbjct: 325 SYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFD 384

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM---PMEPNERIWGSLVAACCLYSNMD 485
           Q         +  ++  L + G+ EEA  L ++M    +EP+   +  +++AC     ++
Sbjct: 385 QVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVN 444

Query: 486 IGILAADHI---FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
            G    D I     +AP  S +Y  + ++ A+AG + + +          I++MP
Sbjct: 445 EGKRYYDQIKNEHQIAPEMS-HYACMVDLLARAGLFSEAQEF--------IRRMP 490



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 182/381 (47%), Gaps = 40/381 (10%)

Query: 15  KPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSI--GLKLMR 72
           K V A +L T+    S    N ++  Y    +++  +A+ I++Q + ++ ++     L+ 
Sbjct: 211 KQVHAYILRTEMAYNS-QVTNALISTYAKSGSVE--NARRIMDQSMETDLNVISFTALLE 267

Query: 73  TYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYT 132
            Y   G M   R +F  + N++VV +  +I  Y  N    +A+ ++++M   G +P+ YT
Sbjct: 268 GYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYT 327

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM- 191
              VL  C+    L  G QIHC  ++  L+ +    N ++ MY + G    ARR+ + + 
Sbjct: 328 LAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVC 387

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS 251
             K+ +TW SM+   AQ+G+ +EA+ +  EM    ++PD  T   +L + ++    N   
Sbjct: 388 WRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVN--E 445

Query: 252 VKEMFLKLDNKNLVS-----WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
            K  + ++ N++ ++     +  M+ + A   + +EA +   +M V   EP+AI+  S+L
Sbjct: 446 GKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPV---EPDAIAWGSLL 502

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLE---------NALVDMYAKCGSLTEARTVF 357
            AC          ++H+  E  +L     L          +A+ ++Y+ CG  ++A  ++
Sbjct: 503 SAC----------RVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIW 552

Query: 358 -----DQMRCQDVVSWTSMIS 373
                  +R +   SWT + S
Sbjct: 553 KARKEKAVRKETGFSWTHIRS 573



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 10/162 (6%)

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           M+AK G L +AR VF +M  +D VSWT M+     +G+  +A+     M   G  P    
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 403 FVSVLSAC--SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
             +VLS+C  + AG +    + F +       VP       ++++ G+ G  E A  + +
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVAN---SVLNMYGKCGDSETATTVFE 117

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS 502
           +MP+      W ++V+       MD+    A+ +F   P++S
Sbjct: 118 RMPVRSVSS-WNAMVSLNTHLGRMDL----AESLFESMPDRS 154


>gi|449522418|ref|XP_004168223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 177/519 (34%), Positives = 283/519 (54%), Gaps = 34/519 (6%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
             S+ ++   ++  YG CG++ D R +F+ I  +++V +N L+ +Y       + L + +
Sbjct: 178 FESDLALSNSMVNMYGKCGRIADARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLLQ 237

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M +    PD  T+   L A +    L +G  +H  ++K GL+ +    + LV +Y +C 
Sbjct: 238 AMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCR 297

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
           CL  A +V      KDVV W +M++G  QN   D+AL V  +M    +KP   T+AS L 
Sbjct: 298 CLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLA 357

Query: 240 S--------------------------------VTNTSPENVLSVK-EMFLKLDNKNLVS 266
           +                                VT  +  N L     +F K+  K+LVS
Sbjct: 358 ACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVS 417

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           WN ++A +A N   ++ +  + +M    + P++I+V S+L ACG   AL  G+ IH +V 
Sbjct: 418 WNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVL 477

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           R  L P +  E ALVDMY KCG+L  A+  FD M  +D+V+W+++I  YG +G+G  A+ 
Sbjct: 478 RSSLIPCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYGFNGKGEIALR 537

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
            +S+ L +G+ P+ + F+SVLSACSH GL+ +G   ++ MT+ +++ P +EH AC+VDLL
Sbjct: 538 KYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYESMTKDFRMSPNLEHRACVVDLL 597

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
            RAGKV+EAY   K M  EP+  + G L+ AC +   +++G + A  +F L P   G +V
Sbjct: 598 SRAGKVDEAYSFYKMMFKEPSIVVLGMLLDACRVNGRVELGKVIARDMFELKPVDPGNFV 657

Query: 507 LLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMN 544
            L+N YA   RW  V++    M S G+KK PG +S+E++
Sbjct: 658 QLANSYASMSRWDGVEKAWTQMRSLGLKKYPGWSSIEVH 696



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/461 (28%), Positives = 223/461 (48%), Gaps = 39/461 (8%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           LH  +++N   H +  IG  L+  Y   G +   R VFD +  +NVV +  +I SY    
Sbjct: 71  LHQSVVVNGLSH-DSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREG 129

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
               A  ++K M   G  P   T   +L    G + L + L +HC ++  G + +L   N
Sbjct: 130 DIDIAFSMFKQMRESGIQPTSVT---LLSLLPGISKLPLLLCLHCLIILHGFESDLALSN 186

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            +V MYGKCG + +ARR+   +  +D+V+WNS+++ Y++ G  +E L + + M+   IKP
Sbjct: 187 SMVNMYGKCGRIADARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKP 246

Query: 230 DADTMASLLPSVT----------------------NTSPENVLSV-----------KEMF 256
           D  T  S L +                        +   E+ L V            ++F
Sbjct: 247 DKQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVF 306

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
                K++V W  MI+    N    +A+ ++ QM    ++P+  ++AS L AC  L    
Sbjct: 307 KSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCD 366

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
           +G  IH YV R+ +  ++  +N+LV MYAKC  L ++ ++F++M  +D+VSW ++++ + 
Sbjct: 367 IGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIVAGHA 426

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
            +G     +  F++M  S L PDSI   S+L AC  AG L +G++    +     L+P I
Sbjct: 427 KNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRS-SLIPCI 485

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
                LVD+  + G +E A      M ++ +   W +L+  
Sbjct: 486 MTETALVDMYFKCGNLENAQKCFDCM-LQRDLVAWSTLIVG 525



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 189/410 (46%), Gaps = 32/410 (7%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           FN L+        ++  L  Y +M       D YT+P + KAC+  N    GL +H SVV
Sbjct: 17  FNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSVV 76

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
             GL ++ + G+ L++ Y K GC+   R+V + M  ++VV W +++  Y++ G  D A  
Sbjct: 77  VNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFS 136

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSPE------------------------------ 247
           + ++M    I+P + T+ SLLP ++                                   
Sbjct: 137 MFKQMRESGIQPTSVTLLSLLPGISKLPLLLCLHCLIILHGFESDLALSNSMVNMYGKCG 196

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
            +   + +F  +  +++VSWN +++ Y+      E + L   M++  I+P+  +  S L 
Sbjct: 197 RIADARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALS 256

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           A      L LG+ +H  + +  L  +  +E+ALV +Y +C  L  A  VF     +DVV 
Sbjct: 257 ASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVM 316

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           WT+MIS    +     A+ +F +M+ S + P +    S L+AC+  G  + G      + 
Sbjct: 317 WTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVL 376

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            Q  ++  I     LV +  +  K++++  +  +M +E +   W ++VA 
Sbjct: 377 RQ-GIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKM-VEKDLVSWNAIVAG 424



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 141/300 (47%), Gaps = 21/300 (7%)

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           S+N +++  +      + +  Y+ M+    + +A +  S+  AC +L+    G  +H+ V
Sbjct: 16  SFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
               L  +  + ++L+  YAK G +   R VFD M  ++VV WT++I +Y   G    A 
Sbjct: 76  VVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAF 135

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
           ++F +M  SG+ P S+  +S+L   S   LL        +   +  L         +V++
Sbjct: 136 SMFKQMRESGIQPTSVTLLSLLPGISKLPLLLCLHCLIILHGFESDLALS----NSMVNM 191

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD-----IGILAADHIFHLAPN 500
            G+ G++ +A  L + +    +   W SL++A   YS +      + +L A  I  + P+
Sbjct: 192 YGKCGRIADARRLFESIGCR-DIVSWNSLLSA---YSKIGATEEILQLLQAMKIEDIKPD 247

Query: 501 QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQIIALPLRSSKCL 560
           +  +   LS    K    GD+ R+ K ++  G+    G +++ + +  ++ L LR  +CL
Sbjct: 248 KQTFCSALSASAIK----GDL-RLGKLVH--GLMLKDGLNIDQHVESALVVLYLR-CRCL 299


>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 754

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 170/532 (31%), Positives = 287/532 (53%), Gaps = 45/532 (8%)

Query: 61  HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKN 120
           H N  +   L+  Y  CG M D R VF+ +  +NVV +  L+  +V N     A+HV++ 
Sbjct: 96  HDNFFVMSFLVNVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQE 155

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M   G  P  YT   VL ACS   SL +G Q H  ++K  LD++   G+ L ++Y KCG 
Sbjct: 156 MLYAGSYPSIYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGR 215

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL-- 238
           L++A +  + +  K+V++W S V+    NG   + L +  EM S  IKP+  T+ S L  
Sbjct: 216 LEDALKAFSRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQ 275

Query: 239 ----PSV----------------TNTSPEN-----------VLSVKEMFLKLDNKNLVSW 267
               PS+                +N    N           ++     F ++D+ ++V+W
Sbjct: 276 CCEIPSLELGTQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTW 335

Query: 268 NVMIAVYAN------NSMPA-----EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
           N MIA +A       +++ A     EA+ ++ ++   G++P+  +++SVL  C  + A+ 
Sbjct: 336 NAMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIE 395

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
            G +IH    +     ++ +  +L+ MY KCGS+  A   F +M  + +++WTSMI+ + 
Sbjct: 396 QGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFS 455

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
             G    A+ +F  M ++G+ P+++ FV VLSACSHAG++ +   YF+IM ++YK+ P +
Sbjct: 456 QHGMSQQALHIFEDMSLAGVRPNTVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPVM 515

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           +H+ C+VD+  R G++E+A + IK+M  EP+E IW + +A C  + N+++G  A++ +  
Sbjct: 516 DHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCRSHGNLELGFYASEQLLS 575

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           L P     YVLL N+Y  A R+ DV RVRK M  + + K+   S + + D+V
Sbjct: 576 LKPKDPETYVLLLNMYLSADRFDDVSRVRKMMEVEKVGKLKDWSWISIKDKV 627



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 173/374 (46%), Gaps = 45/374 (12%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           Y  +L+ C    S      +H  V+K G   N F  + LV +Y KCG +++ARRV  +MP
Sbjct: 67  YVPLLQQCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFENMP 126

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT---------- 242
            ++VV W +++ G+ QN +   A+ V +EM      P   T++++L + +          
Sbjct: 127 RRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLKLGDQ 186

Query: 243 ------------NTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSM 279
                       +TS  + L              + F ++  KN++SW   ++   +N  
Sbjct: 187 FHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIREKNVISWTSAVSACGDNGA 246

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
           P + + L+++M    I+PN  ++ S L  C ++ +L LG ++     +   + NLR+ N+
Sbjct: 247 PVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLRVRNS 306

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM-----------SGQGYDAVALF 388
           L+ +Y K G + EA   F++M    +V+W +MI+ +               +G +A+ +F
Sbjct: 307 LLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIF 366

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
           SK+  SG+ PD     SVLS CS    +E+G       T +   +  +     L+ +  +
Sbjct: 367 SKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGE-QIHAQTIKTGFLSDVIVSTSLISMYNK 425

Query: 449 AGKVEEAYDLIKQM 462
            G +E A     +M
Sbjct: 426 CGSIERASKAFLEM 439



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 166/387 (42%), Gaps = 50/387 (12%)

Query: 37  ILDKYPDIKTLK---KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
           +L     +++LK   + HA  II  HL  + S+G  L   Y  CG++ D    F  I  K
Sbjct: 171 VLHACSSLQSLKLGDQFHA-YIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIREK 229

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           NV+ +   + +  +N      L ++  M      P+ +T    L  C    SL +G Q+ 
Sbjct: 230 NVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQVC 289

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQN---- 209
              +K G + NL   N L+ +Y K G + EA R  N M    +VTWN+M+AG+AQ     
Sbjct: 290 SLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMMELT 349

Query: 210 -------GRFDEALDVCREMESLRIKPDADTMASLLPSVT-------------NTSPENV 249
                   R  EAL +  ++    +KPD  T++S+L   +              T     
Sbjct: 350 KDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGF 409

Query: 250 LS--------------------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
           LS                      + FL++  + +++W  MI  ++ + M  +A+ ++  
Sbjct: 410 LSDVIVSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFED 469

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCG 348
           M + G+ PN ++   VL AC     +         +++K K++P +     +VDM+ + G
Sbjct: 470 MSLAGVRPNTVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPVMDHYECMVDMFVRLG 529

Query: 349 SLTEARTVFDQMRCQ-DVVSWTSMISA 374
            L +A     +M  +     W++ I+ 
Sbjct: 530 RLEQALNFIKKMNYEPSEFIWSNFIAG 556



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 91/183 (49%), Gaps = 2/183 (1%)

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
           E   +    +L  C D  +    + +H +V +     N  + + LV++YAKCG++ +AR 
Sbjct: 61  EEEKLFYVPLLQQCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARR 120

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           VF+ M  ++VV+WT+++  +  + Q   A+ +F +ML +G  P      +VL ACS    
Sbjct: 121 VFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQS 180

Query: 416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
           L+ G  +   +  +Y L       + L  L  + G++E+A     ++  E N   W S V
Sbjct: 181 LKLGDQFHAYII-KYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRI-REKNVISWTSAV 238

Query: 476 AAC 478
           +AC
Sbjct: 239 SAC 241


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 163/561 (29%), Positives = 293/561 (52%), Gaps = 41/561 (7%)

Query: 41  YPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           + D +  + +H Q +++    S   +G  +++ Y    ++ D R VFD +  K+ + +N 
Sbjct: 132 FRDDRAGRVIHGQAVVDG-CDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNT 190

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDP-DCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
           +I  Y  N +Y +++ V++++        D  T   +L A +    L +G+QIH    K 
Sbjct: 191 MISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKT 250

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G   + +   G +++Y KCG +K    +  +    D+V +N+M+ GY  NG  + +L + 
Sbjct: 251 GCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLF 310

Query: 220 REMESLRIKPDADTMASLLP------------------------------SVTNTSPENV 249
           +E+     +  + T+ SL+P                              +   +    +
Sbjct: 311 KELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEI 370

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            S +++F +   K+L SWN MI+ Y  N +  +A+ L+ +M+     PN +++  +L AC
Sbjct: 371 ESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSAC 430

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L AL LG+ +H  V     + ++ +  AL+ MYAKCGS+ EAR +FD M  ++ V+W 
Sbjct: 431 AQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWN 490

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           +MIS YG+ GQG +A+ +F +ML SG+ P  + F+ VL ACSHAGL++EG   F  M  +
Sbjct: 491 TMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHR 550

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y   P ++H+AC+VD+LGRAG ++ A   I+ M +EP   +W +L+ AC ++ + ++   
Sbjct: 551 YGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLART 610

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQI 549
            ++ +F L P+  GY+VLLSNI++    +     VR+    + + K PG ++     ++I
Sbjct: 611 VSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTL-----IEI 665

Query: 550 IALPLRSSKCLTTGPKNVPPI 570
              P       T+G ++ P +
Sbjct: 666 GETP----HVFTSGDQSHPQV 682



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 150/600 (25%), Positives = 266/600 (44%), Gaps = 85/600 (14%)

Query: 15  KPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTY 74
           + V +    T   L+S +   D   +   I  L + HAQII++    ++ S+  KL +  
Sbjct: 4   RTVSSATAETTAALISKNTYLDFFKRSTSISHLAQTHAQIILHG-FRNDISLLTKLTQRL 62

Query: 75  GACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTY 133
              G +   R +F  +   +V  FNVL+R +  N   + +L V+ ++       P+  TY
Sbjct: 63  SDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTY 122

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
              + A SG      G  IH   V  G D  L  G+ +V MY K   +++AR+V + MP 
Sbjct: 123 AFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPE 182

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREM--ESLRIKPDADTMASLLPSV---------- 241
           KD + WN+M++GY +N  + E++ V R++  ES   + D  T+  +LP+V          
Sbjct: 183 KDTILWNTMISGYRKNEMYVESIQVFRDLINESC-TRLDTTTLLDILPAVAELQELRLGM 241

Query: 242 ------TNT---SPENVLS-----------VK---EMFLKLDNKNLVSWNVMIAVYANNS 278
                 T T   S + VL+           +K    +F +    ++V++N MI  Y +N 
Sbjct: 242 QIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNG 301

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
               ++ L+ ++ + G    + ++ S++P  G    L+L   IH Y  +     +  +  
Sbjct: 302 ETELSLSLFKELMLSGARLRSSTLVSLVPVSGH---LMLIYAIHGYCLKSNFLSHASVST 358

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           AL  +Y+K   +  AR +FD+   + + SW +MIS Y  +G   DA++LF +M  S   P
Sbjct: 359 ALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSP 418

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           + +    +LSAC+  G L  G++   ++         I     L+ +  + G + EA  L
Sbjct: 419 NPVTITCILSACAQLGALSLGKWVHDLV-RSTDFESSIYVSTALIGMYAKCGSIAEARRL 477

Query: 459 IKQMPMEPNERIWGSLVAA------------------------------CCLYSNMDIGI 488
              M  + NE  W ++++                               C LY+    G+
Sbjct: 478 FDLMT-KKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGL 536

Query: 489 L-AADHIFHLAPNQSGY------YVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           +   D IF+   ++ G+      Y  + +I    GR G ++R  +F+ +  I+  PG+SV
Sbjct: 537 VKEGDEIFNSMIHRYGFEPSVKHYACMVDIL---GRAGHLQRALQFIEAMSIE--PGSSV 591



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 180/412 (43%), Gaps = 45/412 (10%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQ-----HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
           +LD  P +  L++L   + I+        +S+  +    +  Y  CG++     +F E  
Sbjct: 224 LLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFR 283

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
             ++V +N +I  Y +N     +L ++K + + G      T   ++     S  L++   
Sbjct: 284 KPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPV---SGHLMLIYA 340

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           IH   +K     +      L  +Y K   ++ AR++ ++ P K + +WN+M++GY QNG 
Sbjct: 341 IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGL 400

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPS----------------VTNTSPENVLSV--- 252
            ++A+ + REM+     P+  T+  +L +                V +T  E+ + V   
Sbjct: 401 TEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTA 460

Query: 253 --------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                         + +F  +  KN V+WN MI+ Y  +    EA++++ +M   GI P 
Sbjct: 461 LIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPT 520

Query: 299 AISVASVLPACGDLSALLLGRKI-HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
            ++   VL AC     +  G +I +  + R   +P+++    +VD+  + G L  A    
Sbjct: 521 PVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFI 580

Query: 358 DQMRCQDVVS-WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
           + M  +   S W +++ A  +      A  +  K+    L PD++ +  +LS
Sbjct: 581 EAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLF--ELDPDNVGYHVLLS 630


>gi|357156964|ref|XP_003577636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Brachypodium distachyon]
          Length = 710

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 177/528 (33%), Positives = 288/528 (54%), Gaps = 39/528 (7%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           +HA+ ++   + +NP+    L+     C  +   R VFD   +++V  +N L+R + +++
Sbjct: 171 IHARAVV-LGIATNPAFATSLLAVAAPC-SLAYARRVFDAAPHRDVYMWNTLLRVHAHSH 228

Query: 110 L--YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                 AL +YK M   G  PD YTYP VL AC+ + +  +G   H   V+  L  + F 
Sbjct: 229 AEPQSSALSLYKRMRAAGVAPDHYTYPIVLPACAAARAPRLGRAAHGDAVRFALAGDCFV 288

Query: 168 GNGLVAMYGKCGCLKEARRVL--NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
            + L+AMY + G + +A +V       S+ VV+W +MVAGY QN  F EA+ V   + + 
Sbjct: 289 HSALIAMYCQDGDVADAEQVFLGTAGASRTVVSWTAMVAGYVQNCFFGEAIAVFGAVVAE 348

Query: 226 RIKPDADTMASLLPSVTN----TSPE-----------------------------NVLSV 252
            + P+  T+ S LP +      T+ E                             +VLS 
Sbjct: 349 GVLPNEITLISFLPCLQGQEWLTAGEMVHGFALKLRFDANVPLLNALVAMYGKCGSVLSA 408

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           K +F  +  + LVSWN M+A+Y  NS   +A+  + +M    +  + +++ SVL AC   
Sbjct: 409 KGLFDGMATRTLVSWNTMVAMYEQNSDGVQAIKFFRRMLTEKVGFDCVTLVSVLSACARS 468

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
            AL  G+ +H       L  + R+ N LVDMYAKCG +  AR VFD +R   VVSW++MI
Sbjct: 469 GALETGKWVHELARSHGLDNDARIGNVLVDMYAKCGEIAYAREVFDSLREPGVVSWSAMI 528

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           SAY   G+  +A+ LFS M   G+ P+S    +VL AC H+GL++EG  +F  +  +Y++
Sbjct: 529 SAYANHGEHQEALKLFSLMKGEGVKPNSFTVTAVLVACGHSGLVDEGLKHFNSIAMEYQM 588

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAAD 492
            P +EH+AC++D+LGRAG++ EAY++I+ M ++P++ +WG+ +  C L+ N+++    A+
Sbjct: 589 SPTLEHYACMLDMLGRAGRLVEAYEIIRGMSVQPDKCVWGAFLGGCRLHCNLELAEFVAN 648

Query: 493 HIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            +F    N   +YVL++N+Y +AG   D +R+R+ M    +KK  G S
Sbjct: 649 DLFQSGSNDVTFYVLMANMYFEAGMLEDAERMRRAMKEMELKKTAGHS 696



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 3/164 (1%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++T K +H ++  +  L ++  IG  L+  Y  CG++   R VFD +    VV ++ +I 
Sbjct: 471 LETGKWVH-ELARSHGLDNDARIGNVLVDMYAKCGEIAYAREVFDSLREPGVVSWSAMIS 529

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV-VKVGLD 162
           +Y N+  + +AL ++  M   G  P+ +T   VL AC  S  +  GL+   S+ ++  + 
Sbjct: 530 AYANHGEHQEALKLFSLMKGEGVKPNSFTVTAVLVACGHSGLVDEGLKHFNSIAMEYQMS 589

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAG 205
             L +   ++ M G+ G L EA  ++  M  + D   W + + G
Sbjct: 590 PTLEHYACMLDMLGRAGRLVEAYEIIRGMSVQPDKCVWGAFLGG 633


>gi|242067895|ref|XP_002449224.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
 gi|241935067|gb|EES08212.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
          Length = 570

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 179/540 (33%), Positives = 286/540 (52%), Gaps = 45/540 (8%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++ L  +HA+ I+   + +N +    L+    A   +   R VFD    ++   +N L+R
Sbjct: 29  LRALLPIHARAIV-LGVSANLAFATSLIAG-AAPASLAYARRVFDAAPVRDAYMWNTLLR 86

Query: 104 SYVNNYLYY--------DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
           ++ +++ +         DAL +YK M   G  PD YTYP VL AC+ +    +G  +H  
Sbjct: 87  AHAHSHSHSQSSHSHAVDALALYKRMRAAGVAPDHYTYPIVLPACAAARQPRLGRAVHGD 146

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM--PSKDVVTWNSMVAGYAQNGRFD 213
            V+  LD + F    L+AMY + G + +A  V  +    S+ VV+W +MVAGY QN  F 
Sbjct: 147 AVRFALDGDGFVRCTLIAMYFQEGEVADAELVFAESHGSSRTVVSWTAMVAGYVQNYFFG 206

Query: 214 EALDVCREMESLRIKPDADTMASLLPSV----------------------TNTSPENVL- 250
           EAL +   M +  + P+  T+ S LP +                       N    N L 
Sbjct: 207 EALALFSTMVAEGVLPNEITLISFLPCLQGQEWLDAGEMVHGFVIRSGFDANIPLANALI 266

Query: 251 ----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                       + +F  +  ++LVSWN M+A+Y  +    EA+  + +M    +  + +
Sbjct: 267 AMYGKCGSIPMAEALFEGMAVRSLVSWNTMVAIYEQHGDVVEAIKFFHRMLTEKVGFDCV 326

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           ++ SVL ACG   AL  G+ +H +     L  + R+ N LVDMYAKCG + +AR VFD +
Sbjct: 327 TLVSVLSACGRSGALETGKWVHEFARSHGLDADARIGNVLVDMYAKCGEIADARKVFDCL 386

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             + VVSW++MISAY   G   +A+ LF  M   G+ P+S  F +VL AC H+GL+ EG 
Sbjct: 387 HVRGVVSWSAMISAYANHGDSEEALKLFCLMKSEGVRPNSFTFTAVLVACGHSGLVNEGL 446

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
            +F  +   Y++ P +EH+AC+VD+LGRAG++ EAY++I+ M + P++ +WG+ +  C L
Sbjct: 447 KHFNSILSDYQMSPTLEHYACIVDMLGRAGRLVEAYEIIRGMSLCPDKCVWGAFLGGCKL 506

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           +SN+++    A  +F    N   +YVL+SN+Y +AG   D +R+R+ M    +KK  G S
Sbjct: 507 HSNLELAEFVAKDLFQSGSNDVTFYVLMSNMYFEAGMLEDAERIRRAMKEMELKKTAGHS 566


>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 178/524 (33%), Positives = 285/524 (54%), Gaps = 54/524 (10%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +L      + L K HAQI+++     N  +   L+  Y + G +   + VF++IT  +  
Sbjct: 33  VLKSCVSFRNLAKTHAQIVVSGFSQKNYILN-HLLSLYISFGSLGSAQKVFEDITAPSTT 91

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +N +I+ +  +     ++ ++K M++ G + + +TY  +L AC  S     G QIH  V
Sbjct: 92  VWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRV 151

Query: 157 VKVGLDYNLFNGNGLVAMYGKCG-----CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +  G   NL+    L+ +Y   G      LK A  + ++MP  +VV WNS++AGY + G 
Sbjct: 152 LVNGYWSNLYVRTNLINLYANGGDGGDFDLKRALYLFDEMPDSNVVGWNSLLAGYVRRGD 211

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
           FD A  V  EM                       PE              +N+ +W +M+
Sbjct: 212 FDGARKVFDEM-----------------------PE--------------RNVRTWTIMV 234

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER---- 327
           A +A N     A+ L+ QM   G+E + +++ + L AC +L  L LG+ IH YVER    
Sbjct: 235 AGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRS 294

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
           + L   + L NAL+ MYA CG++  A  +F+++  ++ VSW+S+I+ +   G G +A+ +
Sbjct: 295 RHLPVLVSLNNALIHMYASCGAMDLAYKLFEEIPQRNTVSWSSIITGFAKQGCGVEAIRI 354

Query: 388 FSKMLMSG---LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           F  ML SG   + PD I F+  L+ACSHAGL+ +G   F+ M + + ++P+IEH+ C+VD
Sbjct: 355 FQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVD 414

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI-FHLAPNQ-- 501
           LL RAG + EA  LI+ MPM+PN  +WG+L++ C L+ N +I    A H+ F + PN   
Sbjct: 415 LLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKNDEIVSHVAKHLSFEIDPNNQA 474

Query: 502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMN 544
           +GY++LL+N+YA  GRW D   VR+ M+  G+KK  G S +E+N
Sbjct: 475 AGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWIEIN 518


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 179/593 (30%), Positives = 315/593 (53%), Gaps = 57/593 (9%)

Query: 17  VQALVLSTQY----TLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMR 72
           VQ LV   ++     L++  AC ++      +K  K++H Q+ I      +  I   L+ 
Sbjct: 244 VQMLVDEVKFDCVTMLVAVQACAEL----GSLKLGKQIH-QLAIKFEFVEDLYILNALLN 298

Query: 73  TYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYT 132
            Y   G +  +  +F+ + N++   +N +I +Y     + +A+ ++  M   G   D  T
Sbjct: 299 MYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERT 358

Query: 133 YPCVLKACSG-SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
              +L  C   ++ LL G  +H  V+K G+  +   GN L++MY +  C++  +++ + M
Sbjct: 359 VVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRM 418

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS----------- 240
              D+++WN+M+   A+N    +A ++   M    IKP++ T+ S+L +           
Sbjct: 419 KGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGR 478

Query: 241 -----VTNTSPE-----------------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNS 278
                V   S E                 +  + +++F    +++L+SWN MIA Y  N+
Sbjct: 479 SIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIASYVKNN 538

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK--KLQPNLRL 336
              +A+ L+ +M +   EPN++++ +VL +   L+ L  G+ +H YV R+   L  +L L
Sbjct: 539 QAHKALLLFHRM-ISEAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSL 597

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            NA + MYA+CGSL  A  +F  +  ++++SW +MI+ YGM+G+G DA+  FS+ML  G 
Sbjct: 598 ANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGF 657

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P+ + FVSVLSACSH+G +E G   F  M + + + P + H++C+VDLL R G ++EA 
Sbjct: 658 RPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAR 717

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           + I  MP+EP+  +W +L+++C  YS+        + +  L P  +G YVLLSN+YA AG
Sbjct: 718 EFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAG 777

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRSSKCLTTGPKNVP 568
            W +V+R+R ++  KG++K PG S + + +QV           C + G ++ P
Sbjct: 778 LWLEVRRIRTWLKEKGLRKPPGISWIIVKNQVH----------CFSAGDRSHP 820



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 139/507 (27%), Positives = 247/507 (48%), Gaps = 46/507 (9%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR---HVFDEITNKNVVFFN 99
           +++  + +H   + N    SNP +   L+  Y       D R    +FD +  +N+V +N
Sbjct: 169 ELRLGRGVHGYCLRNGMFDSNPHVATALIGFY----LRFDMRVLPLLFDLMVVRNIVSWN 224

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            +I  Y +   Y+ AL ++  M V     DC T    ++AC+   SL +G QIH   +K 
Sbjct: 225 AMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKF 284

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
               +L+  N L+ MY   G L+ + ++   +P++D   WNSM++ YA  G  +EA+D+ 
Sbjct: 285 EFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLF 344

Query: 220 REMESLRIKPDADTMASLL----------------------------PSVTN------TS 245
             M+S  +K D  T+  +L                             S+ N      T 
Sbjct: 345 IRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTE 404

Query: 246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
              V SV+++F ++   +++SWN MI   A N++ A+A +L+ +M    I+PN+ ++ S+
Sbjct: 405 LNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISI 464

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L AC D++ L  GR IH YV +  ++ N  L  AL DMY  CG    AR +F+    +D+
Sbjct: 465 LAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDL 524

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           +SW +MI++Y  + Q + A+ LF +M+ S   P+S+  ++VLS+ +H   L +G+     
Sbjct: 525 ISWNAMIASYVKNNQAHKALLLFHRMI-SEAEPNSVTIINVLSSFTHLATLPQGQSLHAY 583

Query: 426 MTEQ-YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNM 484
           +T + + L   +      + +  R G ++ A ++ K +P + N   W +++A   +    
Sbjct: 584 VTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLP-KRNIISWNAMIAGYGMNGRG 642

Query: 485 DIGILAADHIFH--LAPNQSGYYVLLS 509
              +LA   +      PN   +  +LS
Sbjct: 643 SDAMLAFSQMLEDGFRPNGVTFVSVLS 669



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 186/364 (51%), Gaps = 35/364 (9%)

Query: 89  EITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLV 148
           +I  K+   +N +I+   N       L  Y  M   G  P+  T P VLKAC+  N++  
Sbjct: 12  KIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 71

Query: 149 GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
           G  IH S+    L  ++  G  +V  Y KCG +++AR V + M  +DVV WN+MV GY  
Sbjct: 72  GKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 131

Query: 209 NGRFDEALDVCREMESLRIKPDADTMASLLPS---------------------VTNTSPE 247
            G ++EA+ + REM    ++P++ TM +LL +                     + +++P 
Sbjct: 132 WGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPH 191

Query: 248 NVLSVKEMFLKLDN------------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
              ++   +L+ D             +N+VSWN MI+ Y +     +A++L++QM V  +
Sbjct: 192 VATALIGFYLRFDMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEV 251

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
           + + +++   + AC +L +L LG++IH+   + +   +L + NAL++MY+  GSL  +  
Sbjct: 252 KFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQ 311

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH--A 413
           +F+ +  +D   W SMISAY   G   +A+ LF +M   G+  D    V +LS C    +
Sbjct: 312 LFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELAS 371

Query: 414 GLLE 417
           GLL+
Sbjct: 372 GLLK 375



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/470 (25%), Positives = 223/470 (47%), Gaps = 49/470 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +H + I    L  +  +G  ++  Y  CG + D R VFD +++++VV +N ++  YV 
Sbjct: 73  KSIH-RSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 131

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL-DYNLF 166
              Y +A+ + + M      P+  T   +L AC G++ L +G  +H   ++ G+ D N  
Sbjct: 132 WGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPH 191

Query: 167 NGNGLVAMYGKCGCLKEARRVL----NDMPSKDVVTWNSMVAGYAQNGRFDEALDV---- 218
               L+  Y     L+   RVL    + M  +++V+WN+M++GY   G + +AL++    
Sbjct: 192 VATALIGFY-----LRFDMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQM 246

Query: 219 ------------------CREMESLRIKPDADTMASLLPSVTNTSPENVL---------- 250
                             C E+ SL++      +A     V +    N L          
Sbjct: 247 LVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSL 306

Query: 251 -SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            S  ++F  + N++   WN MI+ YA      EA+DL+++M+  G++ +  +V  +L  C
Sbjct: 307 ESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMC 366

Query: 310 GDL-SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
            +L S LL G+ +H +V +  ++ +  L NAL+ MY +   +   + +FD+M+  D++SW
Sbjct: 367 EELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISW 426

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMT 427
            +MI A   +     A  LF +M  S + P+S   +S+L+AC     L+ GR  +  +M 
Sbjct: 427 NTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMK 486

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
              ++   +     L D+    G    A DL +  P + +   W +++A+
Sbjct: 487 HSIEINQPLR--TALADMYMNCGDEATARDLFEGCP-DRDLISWNAMIAS 533



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 86/163 (52%)

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
           K+  K+   WN +I   AN       +  Y QME  G+ PN  ++  VL AC   +A+  
Sbjct: 12  KIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 71

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           G+ IHR ++   L  ++R+  A+VD Y KCG + +AR VFD M  +DVV W +M+  Y  
Sbjct: 72  GKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 131

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
            G   +A+ L  +M    L P+S   V++L AC  A  L  GR
Sbjct: 132 WGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGR 174


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 180/532 (33%), Positives = 279/532 (52%), Gaps = 42/532 (7%)

Query: 48  KKLHAQIII--NQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           K+LHA +I   N +L    S+  +++  Y  C +  D   +FDE+  KNVV +N LI   
Sbjct: 93  KQLHAHVIKLGNCNL---LSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGV 149

Query: 106 VNNYLYYD----ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           V     +       H ++ M +    P+C T   +L+A    N + +  Q+HC ++K G 
Sbjct: 150 VEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGF 209

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           D N F G+ LV  Y K G + EA+   +++ S+D+V WN MV+ YA NG   +A  V + 
Sbjct: 210 DSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKL 269

Query: 222 MESLRIKPDADTMASLLPSV---------------------------------TNTSPEN 248
           M    +K D  T  S++ S                                    +  EN
Sbjct: 270 MRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNEN 329

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           +   ++ F  +  KN+VSW  MI  Y  +    EA+ L  +M      P+ +++AS+L +
Sbjct: 330 IEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSS 389

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           CG+LSA     ++H YV     +  L + NALV  Y+KCGS+  A   F  +   D++SW
Sbjct: 390 CGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISW 449

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
           TS++ AY   G   + V +F KML S + PD +AF+ VLSAC+H G + EG +YF +M  
Sbjct: 450 TSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMIN 509

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
            Y+++P  EH+ C++DLLGRAG ++EA +L+  MP+EP     G+ + AC ++ N+ +  
Sbjct: 510 VYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSMPVEPRSDTLGAFLGACKVHRNVGLAR 569

Query: 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            A++ +F + PN+   Y L+SN+YA  G W DV RVRK M  +   K+PG S
Sbjct: 570 WASEKLFVMEPNEPANYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCS 621



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 180/371 (48%), Gaps = 49/371 (13%)

Query: 149 GLQIHCSVVKVGLDYNLFN-GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA 207
           G Q+H  V+K+G + NL +  N ++ +Y KC    +  ++ ++MP K+VV+WN+++ G  
Sbjct: 92  GKQLHAHVIKLG-NCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVV 150

Query: 208 Q------------------------------NGRFDEALD-----VCREMESLRIKPDAD 232
           +                              NG    +++     +CR++    +K   D
Sbjct: 151 EGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFD 210

Query: 233 TMASLLPSVTNTSPENVL--SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
           +   +  ++ ++  +  L    +  F ++ +++LV WNVM++ YA N +  +A  ++  M
Sbjct: 211 SNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLM 270

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
            + G++ +  +  S++ +CG L +  LG+++H  + R     ++ + +ALVDMY+K  ++
Sbjct: 271 RLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENI 330

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
            +AR  FD M  +++VSWT+MI  YG  G G +A+ L  +M+     PD +A  S+LS+C
Sbjct: 331 EDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSSC 390

Query: 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFA----CLVDLLGRAGKVEEAYDLIKQMPMEP 466
            +     E      +    Y +    E F      LV    + G +  A+     +  EP
Sbjct: 391 GNLSATSE-----VVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVA-EP 444

Query: 467 NERIWGSLVAA 477
           +   W SL+ A
Sbjct: 445 DIISWTSLMGA 455


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 162/451 (35%), Positives = 254/451 (56%), Gaps = 39/451 (8%)

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACS-GSNSLLVGLQIHC 154
           V +N LI  +     + ++   + +M+  G  P   TY  VL AC  G+  +L+G+Q+H 
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHG 147

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            VV  G+  +L   N LV MY +C  +  A +V + M  + VV+W S+++G A+ G+ DE
Sbjct: 148 RVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDE 207

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
           A D                                     +F ++  ++ VSW  MI  Y
Sbjct: 208 ARD-------------------------------------LFDRMPERDTVSWTAMIDGY 230

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
              +   EA++++ +M+   +  +  ++ SV+ AC  L AL +G  +  Y+ R+ ++ + 
Sbjct: 231 VWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDA 290

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + NAL+DMY+KCGS+  A  VF  M  +D  +WT++I    ++G   +A+ +F +M+  
Sbjct: 291 FVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRV 350

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
              PD + F+ VL+AC+HAGL+++GR +F  M E Y + P + H+ C++DLLGRAGK+ E
Sbjct: 351 SETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITE 410

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A D I QMPM PN  IWG+L+AAC ++ N +IG L A+ +  L P  S  Y+LLSNIYAK
Sbjct: 411 ALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAK 470

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMN 544
             RW DV+R+R  +  KGIKK PG S +EM+
Sbjct: 471 CNRWEDVRRLRHAIMEKGIKKEPGCSLIEMD 501



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 133/291 (45%), Gaps = 29/291 (9%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           GQ+ + R +FD +  ++ V +  +I  YV    + +AL +++ M       D +T   V+
Sbjct: 203 GQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVI 262

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
            AC+   +L +G  +   + + G+  + F GN L+ MY KCG ++ A  V   M  +D  
Sbjct: 263 TACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKF 322

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
           TW +++ G A NG  +EA+++   M  +   PD  T   +L + T+     V   +E FL
Sbjct: 323 TWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGL--VDKGREFFL 380

Query: 258 KLDNK-----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
            +        N+V +  +I +        EA+D   QM    + PN+    ++L AC   
Sbjct: 381 SMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMP---MTPNSTIWGTLLAAC--- 434

Query: 313 SALLLGRKIHRYVERKKLQPNLRL----ENALV-----DMYAKCGSLTEAR 354
                  ++H   E  +L     L    EN++V     ++YAKC    + R
Sbjct: 435 -------RVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVR 478



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 124/305 (40%), Gaps = 71/305 (23%)

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPA----CGDLSALLLGRKIHRYVERKKLQPNLRLE 337
           +AV  Y +M   G  P+A +  ++L A     G   +    R +H +V R  +  N  + 
Sbjct: 2   DAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVA 61

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
           ++LV  Y   G    AR +  +  C   V+W ++IS +   G+  ++   F  M  +G  
Sbjct: 62  SSLVAAYTAGGDGAAARALVGE--CDTPVAWNALISGHNRGGRFGESCGSFVDMARAGAA 119

Query: 398 PDSIAFVSVLSACSH-----------------AGLLEEGRYYFKI---------MTEQYK 431
           P  + +VSVLSAC                   +G+L + R    +         M   +K
Sbjct: 120 PTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWK 179

Query: 432 L-----VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV----------A 476
           +     V  +  +  L+  L R G+V+EA DL  +MP E +   W +++           
Sbjct: 180 VFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMP-ERDTVSWTAMIDGYVWAARFRE 238

Query: 477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA-------GRWGDVKRVRKFMN 529
           A  ++  M    ++AD            + ++S I A A       G W     VR +M+
Sbjct: 239 ALEMFREMQYSNVSADE-----------FTMVSVITACAQLGALEMGEW-----VRVYMS 282

Query: 530 SKGIK 534
            +GIK
Sbjct: 283 RQGIK 287


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 171/531 (32%), Positives = 285/531 (53%), Gaps = 63/531 (11%)

Query: 16  PVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG 75
           PV   VL+        +    + ++ P ++++   +A + +N HL               
Sbjct: 200 PVANSVLNMYGKCGDSETATTVFERMP-VRSVSSWNAMVSLNTHL--------------- 243

Query: 76  ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH--GFDPDCYTY 133
             G+M     +F+ + ++++V +N +I  Y  N L   AL ++  M +H     PD +T 
Sbjct: 244 --GRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM-LHESSMAPDEFTI 300

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             VL AC+   ++ +G Q+H  +++  + YN    N L++ Y K G ++ ARR+++    
Sbjct: 301 TSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSME 360

Query: 194 KD--VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS 251
            D  V+++ +++ GY + G          +MES R                         
Sbjct: 361 TDLNVISFTALLEGYVKIG----------DMESAR------------------------- 385

Query: 252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
             EMF  ++N+++V+W  MI  Y  N    EA+DL+  M   G EPN+ ++A+VL  C  
Sbjct: 386 --EMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCAS 443

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QDVVSWT 369
           L+ L  G++IH    R  L+ +  + NA++ MYA+ GS   AR +FDQ+ C  ++ ++WT
Sbjct: 444 LACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQV-CWRKETITWT 502

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           SMI A    GQG +AV LF +ML +G+ PD I +V VLSACSHAG + EG+ Y+  +  +
Sbjct: 503 SMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNE 562

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           +++ P + H+AC+VDLL RAG   EA + I++MP+EP+   WGSL++AC ++ N ++  L
Sbjct: 563 HQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAEL 622

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           AA+ +  + PN SG Y  ++N+Y+  GRW D  R+ K    K ++K  G S
Sbjct: 623 AAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFS 673



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 144/601 (23%), Positives = 262/601 (43%), Gaps = 133/601 (22%)

Query: 15  KPVQALVLSTQYTLLSGDACNDILDKYPD-------IKTLKKLHAQIIINQHLHSNPSIG 67
           + V+A +L++ Y       CN++L  Y +       ++  ++L  +I + +    N    
Sbjct: 51  RAVKAGLLASAYL------CNNLLSYYGETAGGAGGLRDARRLFDEIPLARR---NVFTW 101

Query: 68  LKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD 127
             L+  +   G++ D R VF E+  ++ V + V++        + +A+    +M+  GF 
Sbjct: 102 NSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFT 161

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           P  +T   VL +C+ + +  VG ++H  VVK+GL   +   N ++ MYGKCG  + A  V
Sbjct: 162 PTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTV 221

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE 247
              MP + V +WN+MV+     GR D A                                
Sbjct: 222 FERMPVRSVSSWNAMVSLNTHLGRMDLA-------------------------------- 249

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVL 306
                + +F  + ++++VSWN MIA Y  N + A+A+ L+ +M     + P+  ++ SVL
Sbjct: 250 -----ESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVL 304

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ------- 359
            AC +L  + +G+++H Y+ R ++  N ++ NAL+  YAK GS+  AR + DQ       
Sbjct: 305 SACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLN 364

Query: 360 --------------------------MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
                                     M  +DVV+WT+MI  Y  +G+  +A+ LF  M+ 
Sbjct: 365 VISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMIT 424

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRY-------------------------------Y 422
            G  P+S    +VLS C+    L+ G+                                +
Sbjct: 425 CGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPW 484

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM---PMEPNERIWGSLVAACC 479
            + M +Q         +  ++  L + G+ EEA  L ++M    +EP+   +  +++AC 
Sbjct: 485 ARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACS 544

Query: 480 LYSNMDIGILAADHI---FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKM 536
               ++ G    D I     +AP  S +Y  + ++ A+AG + + +          I++M
Sbjct: 545 HAGFVNEGKRYYDQIKNEHQIAPEMS-HYACMVDLLARAGLFSEAQEF--------IRRM 595

Query: 537 P 537
           P
Sbjct: 596 P 596



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 164/368 (44%), Gaps = 78/368 (21%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK----CGCLKEARRVL 188
           Y  +L+ C  + +   G  IH   VK GL  + +  N L++ YG+     G L++ARR+ 
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88

Query: 189 NDMP--SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP 246
           +++P   ++V TWNS+++ +A++GR  +A  V  EM                       P
Sbjct: 89  DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEM-----------------------P 125

Query: 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
           E              ++ VSW VM+          EA+   L M   G  P   ++ +VL
Sbjct: 126 E--------------RDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVL 171

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV- 365
            +C    A  +GRK+H +V +  L   + + N++++MY KCG    A TVF++M  + V 
Sbjct: 172 SSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVS 231

Query: 366 ------------------------------VSWTSMISAYGMSGQGYDAVALFSKMLM-S 394
                                         VSW +MI+ Y  +G    A+ LFS+ML  S
Sbjct: 232 SWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHES 291

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
            + PD     SVLSAC++ G +  G+  +  I+  +     ++ +   L+    ++G VE
Sbjct: 292 SMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAKSGSVE 349

Query: 454 EAYDLIKQ 461
            A  ++ Q
Sbjct: 350 NARRIMDQ 357



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 182/381 (47%), Gaps = 40/381 (10%)

Query: 15  KPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSI--GLKLMR 72
           K V A +L T+    S    N ++  Y    +++  +A+ I++Q + ++ ++     L+ 
Sbjct: 317 KQVHAYILRTEMAYNS-QVTNALISTYAKSGSVE--NARRIMDQSMETDLNVISFTALLE 373

Query: 73  TYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYT 132
            Y   G M   R +F  + N++VV +  +I  Y  N    +A+ ++++M   G +P+ YT
Sbjct: 374 GYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYT 433

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM- 191
              VL  C+    L  G QIHC  ++  L+ +    N ++ MY + G    ARR+ + + 
Sbjct: 434 LAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVC 493

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS 251
             K+ +TW SM+   AQ+G+ +EA+ +  EM    ++PD  T   +L + ++    N   
Sbjct: 494 WRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVN--E 551

Query: 252 VKEMFLKLDNKNLVS-----WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
            K  + ++ N++ ++     +  M+ + A   + +EA +   +M V   EP+AI+  S+L
Sbjct: 552 GKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPV---EPDAIAWGSLL 608

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLE---------NALVDMYAKCGSLTEARTVF 357
            AC          ++H+  E  +L     L          +A+ ++Y+ CG  ++A  ++
Sbjct: 609 SAC----------RVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIW 658

Query: 358 -----DQMRCQDVVSWTSMIS 373
                  +R +   SWT + S
Sbjct: 659 KARKEKAVRKETGFSWTHIRS 679


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 171/531 (32%), Positives = 285/531 (53%), Gaps = 63/531 (11%)

Query: 16  PVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG 75
           PV   VL+        +  + + ++ P ++++   +A + +N HL               
Sbjct: 200 PVANSVLNMYGKCGDAETASTVFERMP-VRSVSSWNAMVSLNTHL--------------- 243

Query: 76  ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH--GFDPDCYTY 133
             G+M     +F+ +  +++V +N +I  Y  N L   AL ++  M +H     PD +T 
Sbjct: 244 --GRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRM-LHESSMAPDEFTI 300

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             VL AC+   ++ +G Q+H  +++  + YN    N L++ Y K G ++ ARR+++    
Sbjct: 301 TSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSME 360

Query: 194 KD--VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS 251
            D  V+++ +++ GY + G          +MES R                         
Sbjct: 361 TDLNVISFTALLEGYVKIG----------DMESAR------------------------- 385

Query: 252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
             EMF  ++N+++V+W  MI  Y  N    EA+DL+  M   G EPN+ ++A+VL  C  
Sbjct: 386 --EMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCAS 443

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QDVVSWT 369
           L+ L  G++IH    R  L+ +  + NA++ MYA+ GS   AR +FDQ+ C  ++ ++WT
Sbjct: 444 LACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQV-CWRKETITWT 502

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           SMI A    GQG +AV LF +ML +G+ PD I +V VLSACSHAG + EG+ Y+  +  +
Sbjct: 503 SMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNE 562

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           +++ P + H+AC+VDLL RAG   EA + I++MP+EP+   WGSL++AC ++ N ++  L
Sbjct: 563 HQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAEL 622

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           AA+ +  + PN SG Y  ++N+Y+  GRW D  R+ K    K ++K  G S
Sbjct: 623 AAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFS 673



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 144/601 (23%), Positives = 261/601 (43%), Gaps = 133/601 (22%)

Query: 15  KPVQALVLSTQYTLLSGDACNDILDKYPD-------IKTLKKLHAQIIINQHLHSNPSIG 67
           + V+A +L++ Y       CN++L  Y +       ++  ++L  +I + +    N    
Sbjct: 51  RAVKAGLLASAYL------CNNLLSYYGETAGGAGGLRDARRLFDEIPLARR---NVFTW 101

Query: 68  LKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD 127
             L+  +   G++ D R VF E+  ++ V + V++        + +A+    +M+  GF 
Sbjct: 102 NSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFT 161

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           P  +T   VL +C+ + +  VG ++H  VVK+GL   +   N ++ MYGKCG  + A  V
Sbjct: 162 PTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTV 221

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE 247
              MP + V +WN+MV+     GR D A                                
Sbjct: 222 FERMPVRSVSSWNAMVSLNTHLGRMDLA-------------------------------- 249

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVL 306
                + +F  +  +++VSWN MIA Y  N + A+A+ L+ +M     + P+  ++ SVL
Sbjct: 250 -----ESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVL 304

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ------- 359
            AC +L  + +G+++H Y+ R ++  N ++ NAL+  YAK GS+  AR + DQ       
Sbjct: 305 SACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLN 364

Query: 360 --------------------------MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
                                     M  +DVV+WT+MI  Y  +G+  +A+ LF  M+ 
Sbjct: 365 VISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMIT 424

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRY-------------------------------Y 422
            G  P+S    +VLS C+    L+ G+                                +
Sbjct: 425 CGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPW 484

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM---PMEPNERIWGSLVAACC 479
            + M +Q         +  ++  L + G+ EEA  L ++M    +EP+   +  +++AC 
Sbjct: 485 ARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACS 544

Query: 480 LYSNMDIGILAADHI---FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKM 536
               ++ G    D I     +AP  S +Y  + ++ A+AG + + +          I++M
Sbjct: 545 HAGFVNEGKRYYDQIKNEHQIAPEMS-HYACMVDLLARAGLFSEAQEF--------IRRM 595

Query: 537 P 537
           P
Sbjct: 596 P 596



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 164/368 (44%), Gaps = 78/368 (21%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK----CGCLKEARRVL 188
           Y  +L+ C  + +   G  IH   VK GL  + +  N L++ YG+     G L++ARR+ 
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88

Query: 189 NDMP--SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP 246
           +++P   ++V TWNS+++ +A++GR  +A  V  EM                       P
Sbjct: 89  DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEM-----------------------P 125

Query: 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
           E              ++ VSW VM+          EA+   L M   G  P   ++ +VL
Sbjct: 126 E--------------RDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVL 171

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV- 365
            +C    A  +GRK+H +V +  L   + + N++++MY KCG    A TVF++M  + V 
Sbjct: 172 SSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVS 231

Query: 366 ------------------------------VSWTSMISAYGMSGQGYDAVALFSKMLM-S 394
                                         VSW +MI+ Y  +G    A+ LFS+ML  S
Sbjct: 232 SWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHES 291

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
            + PD     SVLSAC++ G +  G+  +  I+  +     ++ +   L+    ++G VE
Sbjct: 292 SMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAKSGSVE 349

Query: 454 EAYDLIKQ 461
            A  ++ Q
Sbjct: 350 NARRIMDQ 357



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 182/381 (47%), Gaps = 40/381 (10%)

Query: 15  KPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSI--GLKLMR 72
           K V A +L T+    S    N ++  Y    +++  +A+ I++Q + ++ ++     L+ 
Sbjct: 317 KQVHAYILRTEMAYNS-QVTNALISTYAKSGSVE--NARRIMDQSMETDLNVISFTALLE 373

Query: 73  TYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYT 132
            Y   G M   R +F  + N++VV +  +I  Y  N    +A+ ++++M   G +P+ YT
Sbjct: 374 GYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYT 433

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM- 191
              VL  C+    L  G QIHC  ++  L+ +    N ++ MY + G    ARR+ + + 
Sbjct: 434 LAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVC 493

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS 251
             K+ +TW SM+   AQ+G+ +EA+ +  EM    ++PD  T   +L + ++    N   
Sbjct: 494 WRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVN--E 551

Query: 252 VKEMFLKLDNKNLVS-----WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
            K  + ++ N++ ++     +  M+ + A   + +EA +   +M V   EP+AI+  S+L
Sbjct: 552 GKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPV---EPDAIAWGSLL 608

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLE---------NALVDMYAKCGSLTEARTVF 357
            AC          ++H+  E  +L     L          +A+ ++Y+ CG  ++A  ++
Sbjct: 609 SAC----------RVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIW 658

Query: 358 -----DQMRCQDVVSWTSMIS 373
                  +R +   SWT + S
Sbjct: 659 KARKEKAVRKETGFSWTHIRS 679


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 163/463 (35%), Positives = 254/463 (54%), Gaps = 38/463 (8%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +F +I N N+  FN+LIR +        A   Y  M      PD  T+P ++KA S    
Sbjct: 73  IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           +LVG Q H  +V+ G   +++  N LV MY  CG +  A R+   M  +DVV+W SMVAG
Sbjct: 133 VLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAG 192

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           Y + G  + A                                     +EMF ++ ++NL 
Sbjct: 193 YCKCGMVENA-------------------------------------REMFDEMPHRNLF 215

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           +W++MI  YA N+   +A+DL+  M+  G+  N   + SV+ +C  L AL  G + + YV
Sbjct: 216 TWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYV 275

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
            +  +  NL L  ALVDM+ +CG + +A  VF+ +   D +SW+S+I    + G  + A+
Sbjct: 276 VKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAM 335

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
             FS+M+  G  P  + F +VLSACSH GL+E+G   ++ M + + + PR+EH+ C+VD+
Sbjct: 336 HYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDM 395

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           LGRAGK+ EA + I +M ++PN  I G+L+ AC +Y N ++     + +  + P  SGYY
Sbjct: 396 LGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYY 455

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           VLLSNIYA AG+W  ++ +R  M  K +KK PG S +E++ ++
Sbjct: 456 VLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKI 498



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 132/274 (48%), Gaps = 34/274 (12%)

Query: 242 TNTSPENVLSVK-EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
           T   P N+L     +F ++ N NL  +N++I  ++  + P++A   Y QM    I P+ I
Sbjct: 59  TFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNI 118

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           +   ++ A  ++  +L+G + H  + R   Q ++ +EN+LV MYA CG +  A  +F QM
Sbjct: 119 TFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQM 178

Query: 361 RCQDVVSWTSMISAYGMSG------------------------QGY-------DAVALFS 389
             +DVVSWTSM++ Y   G                         GY        A+ LF 
Sbjct: 179 GFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFE 238

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
            M   G+  +    VSV+S+C+H G LE G   ++ + + +  V  I   A LVD+  R 
Sbjct: 239 FMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTA-LVDMFWRC 297

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
           G +E+A  + + +P E +   W S++    ++ +
Sbjct: 298 GDIEKAIHVFEGLP-ETDSLSWSSIIKGLAVHGH 330



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 120/240 (50%), Gaps = 8/240 (3%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y  CG + + R +FDE+ ++N+  ++++I  Y  N  +  A+ +++ M   G   +    
Sbjct: 193 YCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVM 252

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             V+ +C+   +L  G + +  VVK  +  NL  G  LV M+ +CG +++A  V   +P 
Sbjct: 253 VSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPE 312

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS-PENVLSV 252
            D ++W+S++ G A +G   +A+    +M SL   P   T  ++L + ++    E  L +
Sbjct: 313 TDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEI 372

Query: 253 KEMFLKLDNK---NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            E  +K D+     L  +  ++ +       AEA +  L+M V   +PNA  + ++L AC
Sbjct: 373 YEN-MKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHV---KPNAPILGALLGAC 428



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 1/143 (0%)

Query: 53  QIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYY 112
           + ++  H+  N  +G  L+  +  CG +    HVF+ +   + + ++ +I+    +   +
Sbjct: 273 EYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAH 332

Query: 113 DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYNLFNGNGL 171
            A+H +  M   GF P   T+  VL ACS    +  GL+I+ ++ K  G++  L +   +
Sbjct: 333 KAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCI 392

Query: 172 VAMYGKCGCLKEARRVLNDMPSK 194
           V M G+ G L EA   +  M  K
Sbjct: 393 VDMLGRAGKLAEAENFILKMHVK 415


>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
          Length = 633

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 174/512 (33%), Positives = 281/512 (54%), Gaps = 25/512 (4%)

Query: 36  DILDKYPDIKTLKKLHAQ--IIINQHLHSNPSIGLKLMR--TYGACGQMVDTRHVFDEIT 91
           D+L K   + ++K++     +I    L ++P +  K++   +    G +V  + +F++ T
Sbjct: 8   DLLSKLQQLSSVKEVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTT 67

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACS---------- 141
             N    N +IR+Y  +     A+++Y  M       D + YP  LKAC+          
Sbjct: 68  MDNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFMYPFGLKACARVLWCNEGDI 127

Query: 142 GSNSLLV---GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVT 198
               L +   G +IHC + ++GLD + F  N LV +Y +CG L  ARRV ++M  K + +
Sbjct: 128 KCTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARRVFDEMTEKTITS 187

Query: 199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLK 258
           WN M++ Y Q   FD A  +   M      P  + ++  +          +   K +F +
Sbjct: 188 WNVMISAYDQINDFDSADSLIGSM------PGKNVVSWNMLIARYIRLGKIEDAKAVFQE 241

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +  ++ VSWN MIA Y      A A+ L+ +ME+  +E   I++ SVL AC +  AL +G
Sbjct: 242 MPERDAVSWNSMIAGYVQIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIG 301

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           RKIH  +++++ +    L NALVDMYAKCG L  A  VF +++ + +  W +MI +  + 
Sbjct: 302 RKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVH 361

Query: 379 GQGYDAVALFSKMLMS--GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
           G   +A+ LFS M MS  G  P+ + F+ VL ACSH GL++EGR +F  M  +YK++P I
Sbjct: 362 GYCEEALRLFSTMEMSVDGARPNRVTFIGVLIACSHKGLVDEGRKFFNRMVNEYKIMPDI 421

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           +H+ C+VDLL R G ++EA+ +IK MP E N  +W +L+ AC ++ ++D+   +   +  
Sbjct: 422 KHYGCMVDLLSRCGLLKEAHHMIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGK 481

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
           + P + G YVLLSNIYA+A RW DV+R  K +
Sbjct: 482 MEPLRDGDYVLLSNIYAEAQRWNDVERASKIL 513


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 183/549 (33%), Positives = 293/549 (53%), Gaps = 54/549 (9%)

Query: 45  KTLKKLHAQIIINQHLHS------NPSIGLKLMRTYGACGQMVDTRHVFDEIT-NKNVVF 97
           KTL+++H Q+++N  +H+      + +I LK             +  +F  I  + N   
Sbjct: 38  KTLQQVHTQMVVNSSIHTPNNHLLSKAIHLK---------NFPYSSLLFSHIAPHPNDYA 88

Query: 98  FNVLIRSYVNNYLYYD-ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
           FN++IR+    +  Y  AL ++  M      PD +T+P    +C+   SL      H  +
Sbjct: 89  FNIMIRALTTTWHNYPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLL 148

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
            K+ L  +    + L+  Y +CG +  AR+V +++P +D V+WNSM+AGYA+ G   EA+
Sbjct: 149 FKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAV 208

Query: 217 DVCREMESLR-IKPDADTMASLLPS----------------------VTNTSPENVL--- 250
           +V REM      +PD  ++ SLL +                        N+   + L   
Sbjct: 209 EVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISM 268

Query: 251 --------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
                   S + +F  +  +++++WN +I+ YA N M  EA+ L+  M+   +  N I++
Sbjct: 269 YAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITL 328

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            +VL AC  + AL LG++I  Y  ++  Q ++ +  AL+DMYAK GSL  A+ VF  M  
Sbjct: 329 TAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQ 388

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKML--MSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           ++  SW +MISA    G+  +A++LF  M     G  P+ I FV +LSAC HAGL++EG 
Sbjct: 389 KNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGY 448

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
             F +M+  + LVP+IEH++C+VDLL RAG + EA+DLI++MP +P++   G+L+ AC  
Sbjct: 449 RLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACRS 508

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
             N+DIG      I  + P+ SG Y++ S IYA    W D  R+R  M  KGI K PG S
Sbjct: 509 KKNVDIGERVMRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCS 568

Query: 541 -VEMNDQVQ 548
            +E+ + + 
Sbjct: 569 WIEVENHLH 577


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 163/534 (30%), Positives = 280/534 (52%), Gaps = 39/534 (7%)

Query: 29  LSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFD 88
           + G   N ++D Y     + + H  +        +  +   L+  Y    ++   R +FD
Sbjct: 267 IRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFD 326

Query: 89  EITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLV 148
           ++  +++V +  ++  YV    Y ++L +++ M      PD      VL AC       +
Sbjct: 327 KMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDL 386

Query: 149 GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
           G  +H  +V  G+  + F GN L+ +Y KCG L EA R    +P K   +WNSM+ G+ +
Sbjct: 387 GRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCR 446

Query: 209 NGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWN 268
           +G  D+A                                     ++ F K+  K++VSWN
Sbjct: 447 SGGVDKA-------------------------------------RDFFNKIPEKDIVSWN 469

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
            M+  Y  + +  E+ +++ +M+   ++P+  ++ S+L +C  + AL  G  ++ Y+E+ 
Sbjct: 470 TMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKN 529

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
           ++  +  L  AL+DMY KCG +  A  +F Q+  ++V  WT+M++AY M GQ  +A+ L+
Sbjct: 530 EIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLY 589

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
            +M   G+ PD + F+++L+ACSH GL++EG  YF  +   Y ++P I H+ C+VDLLGR
Sbjct: 590 LEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGR 649

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508
            G +EE    I++MP+EP+  IW SL+ AC  + N+++   A   +  + P  +G +VLL
Sbjct: 650 VGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLL 709

Query: 509 SNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV-QIIALPLRSSKCL 560
           SNIYA AGRW DV +VR  ++  G+ K PG + +E N  V + +A  L S+  L
Sbjct: 710 SNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVASNLVSADIL 763



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 128/551 (23%), Positives = 233/551 (42%), Gaps = 100/551 (18%)

Query: 24  TQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDT 83
           T +++L      D+L    +I+    +HA +I    +H +P I  +++    +   +   
Sbjct: 28  TSHSVLRPHWIIDLLKSCSNIREFSPIHAHLITANLIH-DPEITSQVLAFLLSVNNLDCA 86

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
             +         + +N L+ + +      + L  Y +M   G   D  T+  ++ AC  +
Sbjct: 87  HQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKN 146

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
             + +G ++H  ++K G   N    N L+ +Y KCG LKE  ++   M  +DV++WN+M+
Sbjct: 147 FDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMI 206

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP------------ENVLS 251
           + Y   G + EALD+  EM    + PD  TM SL+ +                  +N L 
Sbjct: 207 SCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLW 266

Query: 252 VKEMFL-----------KLDNK------------NLVSWNVMIAVYANNSMPAEAVDL-- 286
           ++   L           K+D              ++V W  +++ Y  ++   +A  L  
Sbjct: 267 IRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFD 326

Query: 287 -----------------------------YLQMEVHGIEPNAISVASVLPACGDLSALLL 317
                                        + QM    + P+ +++ +VL AC  L    L
Sbjct: 327 KMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDL 386

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--------------- 362
           GR +H ++    +  +  L NAL+D+YAKCG L EA   F+Q+ C               
Sbjct: 387 GRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCR 446

Query: 363 ----------------QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
                           +D+VSW +M++AY       ++  +F KM  S + PD    +S+
Sbjct: 447 SGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISL 506

Query: 407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP 466
           LS+C+  G L  G  +  +  E+ ++         L+D+ G+ G VE AY++  Q+ +E 
Sbjct: 507 LSSCAKVGALNHG-IWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQI-IEK 564

Query: 467 NERIWGSLVAA 477
           N  +W +++AA
Sbjct: 565 NVFVWTAMMAA 575



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 10/246 (4%)

Query: 3   AVVLLCRH---FSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQH 59
            V+  C H   F   + V A ++ T   L+ G   N +LD Y     L +  A     Q 
Sbjct: 373 TVLSACVHLEDFDLGRSVHAFIV-TYGMLVDGFLGNALLDLYAKCGKLDE--ALRTFEQL 429

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
              + +    ++  +   G +   R  F++I  K++V +N ++ +YV + L+ ++  ++ 
Sbjct: 430 PCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFC 489

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK--VGLDYNLFNGNGLVAMYGK 177
            M      PD  T   +L +C+   +L  G+ ++  + K  +G+D  L  G  L+ MYGK
Sbjct: 490 KMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAML--GTALIDMYGK 547

Query: 178 CGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASL 237
           CGC++ A  +   +  K+V  W +M+A YA  G+  EA+D+  EME   +KPD  T  +L
Sbjct: 548 CGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIAL 607

Query: 238 LPSVTN 243
           L + ++
Sbjct: 608 LAACSH 613


>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
 gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 176/540 (32%), Positives = 298/540 (55%), Gaps = 40/540 (7%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           ++    +S+  +   ++  Y  CG++ D  ++FD++  +N+  +N +I  +         
Sbjct: 78  VVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRV 137

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
            +++  M + G  PD  T   + +A   + SL     +H   ++ GLD +    N  +A 
Sbjct: 138 FNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVSNTWIAA 197

Query: 175 YGKCGCLKEARRVLNDM--PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
           Y KCG L+ A+ V + +   ++  V+WNS++A YA  G++ +A+   + +     KPDA 
Sbjct: 198 YSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDAS 257

Query: 233 TMASLLPSVTNTSPE-----------------------------------NVLSVKEMFL 257
           T+ SLL S     PE                                   ++ S   +F 
Sbjct: 258 TIISLLSSCQQ--PEALIYGFLIHGHGFQLGCDSDISLINTLISMYSRCGDISSATILFD 315

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
            +  +  VSW  MI+ Y+      +A+ L+  ME  G +P+ ++V S++  CG   AL L
Sbjct: 316 GMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGALGL 375

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           G  I  Y    +L+ ++ + NAL+DMYAKCGSL +AR +F  +  + VVSWT+MI+A  +
Sbjct: 376 GHWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPNRTVVSWTAMIAACAL 435

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
           +G+  +A+ LFS +  SG+ P++I F++VL AC H G LE+GR  F +MTE+Y + P ++
Sbjct: 436 NGEFREALDLFSLLSESGIEPNNITFLAVLQACCHGGYLEKGRECFMMMTERYGINPGLD 495

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHL 497
           H++C++DLLGR GK+ EA ++I+ MPM+P+E IWG+L+ AC +++NM+IG   + ++F L
Sbjct: 496 HYSCMIDLLGRKGKLIEALEVIQDMPMKPDEGIWGALLGACKIHNNMEIGEYVSRYLFEL 555

Query: 498 APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
            P  +  +V ++NIYA  GRW +V  +RK M S  ++K PG S V++N    +  +  RS
Sbjct: 556 QPRVAVSFVEMANIYASVGRWDEVAAMRKTMRSNQMRKSPGKSVVQVNGMSHVFFVEDRS 615



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 207/424 (48%), Gaps = 41/424 (9%)

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
            + ++N  IR  VN      AL ++  + ++G  P+ +T+P + KAC+  + L     IH
Sbjct: 16  TLTWWNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNSQIIH 75

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
             VVK     +++    +V MY KCG + +A  + + MP +++ +WN+M+ G++Q G  D
Sbjct: 76  THVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLD 135

Query: 214 EALDVCREMESLRIKPDADTMASLLPSV----------------------TNTSPENV-- 249
              ++   M  +  +PDA T+  L  +V                       +TS  N   
Sbjct: 136 RVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVSNTWI 195

Query: 250 --------LSVKEMF---LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                   L + +M    ++   ++ VSWN +IA YA+     +AV  Y  +   G +P+
Sbjct: 196 AAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPD 255

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
           A ++ S+L +C    AL+ G  IH +  +     ++ L N L+ MY++CG ++ A  +FD
Sbjct: 256 ASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISMYSRCGDISSATILFD 315

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
            M  +  VSWT+MIS Y   G+  DA+ LF+ M  +G  PD +  +S++S C   G L  
Sbjct: 316 GMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGALGL 375

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI--WGSLVA 476
           G ++       ++L   +     L+D+  + G + +A ++   +   PN  +  W +++A
Sbjct: 376 G-HWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSL---PNRTVVSWTAMIA 431

Query: 477 ACCL 480
           AC L
Sbjct: 432 ACAL 435



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 128/486 (26%), Positives = 208/486 (42%), Gaps = 85/486 (17%)

Query: 14  TKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRT 73
           T+P  A V+     ++S  +          ++ LK +HA I I   L ++ S+    +  
Sbjct: 149 TRPDAATVIGLTRAVISAKS----------LRFLKAVHA-IGIETGLDADTSVSNTWIAA 197

Query: 74  YGACGQMVDTRHVFDEI--TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCY 131
           Y  CG++   + VF  I  T ++ V +N LI  Y +   Y DA+  YK +   GF PD  
Sbjct: 198 YSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDAS 257

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
           T   +L +C    +L+ G  IH    ++G D ++   N L++MY +CG +  A  + + M
Sbjct: 258 TIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISMYSRCGDISSATILFDGM 317

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP----- 246
             +  V+W +M++GY++ GR D+AL +   ME    KPD  T+ SL+     T       
Sbjct: 318 SIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGALGLGH 377

Query: 247 --ENVLSV--------------------------KEMFLKLDNKNLVSWNVMIAVYANNS 278
             +N  S+                          +E+F  L N+ +VSW  MIA  A N 
Sbjct: 378 WIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPNRTVVSWTAMIAACALNG 437

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK-IHRYVERKKLQPNLRLE 337
              EA+DL+  +   GIEPN I+  +VL AC     L  GR+      ER  + P L   
Sbjct: 438 EFREALDLFSLLSESGIEPNNITFLAVLQACCHGGYLEKGRECFMMMTERYGINPGLDHY 497

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
           + ++D+  + G L EA  V   M  +                                  
Sbjct: 498 SCMIDLLGRKGKLIEALEVIQDMPMK---------------------------------- 523

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE-HFACLVDLLGRAGKVEEAY 456
           PD   + ++L AC     +E G Y  + +   ++L PR+   F  + ++    G+ +E  
Sbjct: 524 PDEGIWGALLGACKIHNNMEIGEYVSRYL---FELQPRVAVSFVEMANIYASVGRWDEVA 580

Query: 457 DLIKQM 462
            + K M
Sbjct: 581 AMRKTM 586


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 173/505 (34%), Positives = 275/505 (54%), Gaps = 38/505 (7%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVY-KNMSVHGFDPDCYT 132
           Y   G +   R +FD    +N   +N +I  YV N    +A+ ++ + M    F  D  T
Sbjct: 265 YAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVT 324

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           +   L A S    L +G Q+H  ++K      +   N ++ MY +CG +  + +V ++M 
Sbjct: 325 FLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNML 384

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV--- 249
            +DVVTWN+MV+ + QNG  DE L +   M+      D+ T+ +LL   +N   + +   
Sbjct: 385 ERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQ 444

Query: 250 -----------------------------LSVKEMFLKLDN--KNLVSWNVMIAVYANNS 278
                                         + +++F K  +  ++  +WN MIA Y  N 
Sbjct: 445 AHAYLIRHGIQFEGMDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNG 504

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
           +  E   ++ +M    + PNA+++AS+LPAC  +  + LG++IH +  R  L  N+ +  
Sbjct: 505 LSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGT 564

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           AL+DMY+K G++T A  VF +   ++ V++T+MIS+YG  G G  A++LF  ML SG+ P
Sbjct: 565 ALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKP 624

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           DS+ FV++LSACS+AGL++EG   F+ M  +YK+ P  EH+ C+ D+LGR G+V EAY+ 
Sbjct: 625 DSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEF 684

Query: 459 IKQMPMEPNE-RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS--GYYVLLSNIYAKA 515
           +K +  E N   IWGSL+ AC ++   ++G + A+ +  +    S  GY+VLLSNIYA  
Sbjct: 685 VKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLTGYHVLLSNIYAAE 744

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS 540
           G W +V RVRK M  KG+ K  G S
Sbjct: 745 GNWDNVDRVRKEMRQKGLMKEAGCS 769



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 199/447 (44%), Gaps = 59/447 (13%)

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP--DCYTYPCVLKACSG 142
           H+FD I     V +N +I  ++ N +  DAL  Y  M      P  D YT+   LKAC+ 
Sbjct: 58  HLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASP-SPKFDSYTFSSTLKACAQ 116

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA---------------RRV 187
           + SL +G  +HC V++     +    N L+ MY  C  L E                RRV
Sbjct: 117 ARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTC--LTEVPYLGTAYDFNNCDLVRRV 174

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP- 246
            + M  ++VV WN+M++ Y +  R  EA  + R M  + I+P   +  ++ P+V   S  
Sbjct: 175 FDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDY 234

Query: 247 --ENVLS--------------------------------VKEMFLKLDNKNLVSWNVMIA 272
              NVL                                  +E+F     +N   WN MI 
Sbjct: 235 DNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIG 294

Query: 273 VYANNSMPAEAVDLYLQ-MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
            Y  N+ P EA+DL++Q ME      + ++  S L A   L  L LGR++H Y+ +    
Sbjct: 295 GYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTI 354

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
             + + NA++ MY++CGS+  +  VF  M  +DVV+W +M+SA+  +G   + + L   M
Sbjct: 355 LQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAM 414

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
              G   DS+   ++LS  S+    E G+     +         ++ +  L+D+  ++G 
Sbjct: 415 QKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDSY--LIDMYAKSGL 472

Query: 452 VEEAYDLI-KQMPMEPNERIWGSLVAA 477
           +  A  L  K    + +E  W +++A 
Sbjct: 473 ITTAQQLFEKNSDYDRDEATWNAMIAG 499



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 114/490 (23%), Positives = 223/490 (45%), Gaps = 65/490 (13%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGAC-------GQMVD------TRHVFDEI 90
           +K  K LH  ++   H  S+  +   L+  Y  C       G   D       R VFD +
Sbjct: 120 LKLGKALHCHVL-RSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTM 178

Query: 91  TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY----PCVLKACSGSNS- 145
             +NVV +N +I  YV      +A  +++ M   G  P   ++    P V +     N+ 
Sbjct: 179 RKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYDNAN 238

Query: 146 LLVGLQIHCSVVKVGLDY--NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
           +L GL     VVK+G D+  + F  +  + MY + GC+  AR + +    ++   WN+M+
Sbjct: 239 VLYGL-----VVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMI 293

Query: 204 AGYAQNGRFDEALDV-CREMESLRIKPDADTMASLLPSVTNTS--------------PEN 248
            GY QN    EA+D+  + MES +   D  T  S L +++                    
Sbjct: 294 GGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSST 353

Query: 249 VLSVK-------------------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
           +L V                    ++F  +  +++V+WN M++ +  N +  E + L   
Sbjct: 354 ILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFA 413

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M+  G   +++++ ++L    +L +  +G++ H Y+ R  +Q    +++ L+DMYAK G 
Sbjct: 414 MQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE-GMDSYLIDMYAKSGL 472

Query: 350 LTEARTVFDQMR--CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           +T A+ +F++     +D  +W +MI+ Y  +G   +  A+F KM+   + P+++   S+L
Sbjct: 473 ITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASIL 532

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
            AC+  G +  G+         + L   +     L+D+  ++G +  A ++  +  +E N
Sbjct: 533 PACNPMGTIGLGKQIHGFAIRCF-LNRNVFVGTALLDMYSKSGAITYAENVFAE-TLEKN 590

Query: 468 ERIWGSLVAA 477
              + +++++
Sbjct: 591 SVTYTTMISS 600



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 96/195 (49%), Gaps = 4/195 (2%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--KNVVFFNVLIRSY 105
           K+ HA +I  +H      +   L+  Y   G +   + +F++ ++  ++   +N +I  Y
Sbjct: 443 KQAHAYLI--RHGIQFEGMDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGY 500

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
             N L  +   V++ M      P+  T   +L AC+   ++ +G QIH   ++  L+ N+
Sbjct: 501 TQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNV 560

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           F G  L+ MY K G +  A  V  +   K+ VT+ +M++ Y Q+G  + AL +   M   
Sbjct: 561 FVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGS 620

Query: 226 RIKPDADTMASLLPS 240
            IKPD+ T  ++L +
Sbjct: 621 GIKPDSVTFVAILSA 635



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 10/172 (5%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H    I   L+ N  +G  L+  Y   G +    +VF E   KN V +  +I SY  
Sbjct: 545 KQIHG-FAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQ 603

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           + +   AL ++  M   G  PD  T+  +L ACS +  +  GL+I  S+ +   +Y +  
Sbjct: 604 HGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMER---EYKIQP 660

Query: 168 GNG----LVAMYGKCGCLKEARRVLNDMPSKDVV--TWNSMVAGYAQNGRFD 213
                  +  M G+ G + EA   +  +  +      W S++     +G F+
Sbjct: 661 SAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFE 712


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 177/516 (34%), Positives = 281/516 (54%), Gaps = 41/516 (7%)

Query: 37  ILDKY-PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNV 95
           +LDK    +K L+K+HAQ+I         +    L       G +     VF +I N N+
Sbjct: 1   MLDKNCTSMKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNL 60

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNM--SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
             +N +IR +  +   ++A+ ++ +M  +     P   TYP V KA +       G Q+H
Sbjct: 61  FVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLH 120

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
             V+K+GL+ + F  N ++ MY  CG L EA+R+ +     DVVTWN+M+ G A+ G  D
Sbjct: 121 GRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEID 180

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273
           ++                                     + +F K+  +N VSWN MI+ 
Sbjct: 181 KS-------------------------------------RRLFDKMLLRNTVSWNSMISG 203

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           Y       EA++L+ +M+  GI+P+  ++ S+L AC  L AL  G  IH Y+ +     N
Sbjct: 204 YVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALN 263

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             +  A++DMY+KCGS+ +A  VF     + +  W S+I    MSG+G +AV LFSK+  
Sbjct: 264 SIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLES 323

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           S L PD ++F+ VL+AC+HAG+++  + YF +M+E YK+ P I+H++C+VD+LGRAG +E
Sbjct: 324 SNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLE 383

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA +LIK MP+ P+  IWGSL+++C  Y N+++   AA  +  L PN+S  ++LLSN+YA
Sbjct: 384 EAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDPNESSSFILLSNVYA 443

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
               + +    R  +  K + K PG S +E+N +V 
Sbjct: 444 AHNHFEEAIEQRLSLKEKQMDKEPGCSLIEVNGEVH 479


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 178/493 (36%), Positives = 264/493 (53%), Gaps = 40/493 (8%)

Query: 59  HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVY 118
           H+  +  +G  L+  Y     +   R++FDE+ +++VV +  L+  Y    L  +A  V+
Sbjct: 171 HVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVF 230

Query: 119 KNMSVHG-FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK 177
             M V G   P+  T   V+ A      L  G  ++  V   G+  ++   N L+ M+GK
Sbjct: 231 CRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGK 290

Query: 178 CGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASL 237
            GC   AR V + M  KDV +W +MV  YA+          C ++ES             
Sbjct: 291 FGCAASAREVFDSMAVKDVYSWTTMVNAYAK----------CGDLES------------- 327

Query: 238 LPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297
                            +F  +  +N VSW+ MIA Y+  + P EAV L+  M   G+EP
Sbjct: 328 --------------AARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEP 373

Query: 298 NAISVASVLPACGDLSALLLGRKIH-RYVERKKLQPNLRLENALVDMYAKCGSLTEARTV 356
               + SVL AC  L  L LGR I+  YV   K    + L NA +D+YAKCG    A  +
Sbjct: 374 INAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKL 433

Query: 357 FDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL 416
           F +M  ++VVSW SMI A+ + GQ  + + LF ++  + + PD I F+ +LSACSH+GL+
Sbjct: 434 FAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLV 493

Query: 417 EEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
            EGR YFK M   Y + P+ EH+AC++DLLG+ G +EEA+++ K MPME +E  WG+L+ 
Sbjct: 494 SEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLN 553

Query: 477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKM 536
           AC +Y N++IG  AAD +  L P  SG YVL+S IYA   +W  VK +R  M  +G+KK 
Sbjct: 554 ACRMYGNVEIGEFAADKLVQLNPLDSGIYVLMSQIYASKNKWDQVKILRVLMRERGVKKN 613

Query: 537 PG-ASVEMNDQVQ 548
           PG +S+E++ +  
Sbjct: 614 PGCSSIEVDGKFH 626


>gi|449442767|ref|XP_004139152.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 177/519 (34%), Positives = 282/519 (54%), Gaps = 34/519 (6%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
             S+ ++   ++  YG CG++ D R +F  I  +++V +N L+ +Y       + L + +
Sbjct: 178 FESDLALSNSMVNMYGKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQ 237

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M +    PD  T+   L A +    L +G  +H  ++K GL+ +    + LV +Y +C 
Sbjct: 238 AMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCR 297

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
           CL  A +V      KDVV W +M++G  QN   D+AL V  +M    +KP   T+AS L 
Sbjct: 298 CLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLA 357

Query: 240 S--------------------------------VTNTSPENVLSVK-EMFLKLDNKNLVS 266
           +                                VT  +  N L     +F K+  K+LVS
Sbjct: 358 ACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVS 417

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           WN ++A +A N   ++ +  + +M    + P++I+V S+L ACG   AL  G+ IH +V 
Sbjct: 418 WNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVL 477

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           R  L P +  E ALVDMY KCG+L  A+  FD M  +D+V+W+++I  YG +G+G  A+ 
Sbjct: 478 RSSLIPCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYGFNGKGEIALR 537

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
            +S+ L +G+ P+ + F+SVLSACSH GL+ +G   ++ MT+ +++ P +EH AC+VDLL
Sbjct: 538 KYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYESMTKDFRMSPNLEHRACVVDLL 597

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
            RAGKV+EAY   K M  EP+  + G L+ AC +   +++G + A  +F L P   G +V
Sbjct: 598 SRAGKVDEAYSFYKMMFKEPSIVVLGMLLDACRVNGRVELGKVIARDMFELKPVDPGNFV 657

Query: 507 LLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMN 544
            L+N YA   RW  V++    M S G+KK PG +S+E++
Sbjct: 658 QLANSYASMSRWDGVEKAWTQMRSLGLKKYPGWSSIEVH 696



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/461 (28%), Positives = 223/461 (48%), Gaps = 39/461 (8%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           LH  +++N   H +  IG  L+  Y   G +   R VFD +  +NVV +  +I SY    
Sbjct: 71  LHQSVVVNGLSH-DSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREG 129

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
               A  ++K M   G  P   T   +L    G + L + L +HC ++  G + +L   N
Sbjct: 130 DIDIAFSMFKQMRESGIQPTSVT---LLSLLPGISKLPLLLCLHCLIILHGFESDLALSN 186

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            +V MYGKCG + +ARR+   +  +D+V+WNS+++ Y++ G  +E L + + M+   IKP
Sbjct: 187 SMVNMYGKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKP 246

Query: 230 DADTMASLLPSVT----------------------NTSPENVLSV-----------KEMF 256
           D  T  S L +                        +   E+ L V            ++F
Sbjct: 247 DKQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVF 306

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
                K++V W  MI+    N    +A+ ++ QM    ++P+  ++AS L AC  L    
Sbjct: 307 KSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCD 366

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
           +G  IH YV R+ +  ++  +N+LV MYAKC  L ++ ++F++M  +D+VSW ++++ + 
Sbjct: 367 IGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIVAGHA 426

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
            +G     +  F++M  S L PDSI   S+L AC  AG L +G++    +     L+P I
Sbjct: 427 KNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRS-SLIPCI 485

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
                LVD+  + G +E A      M ++ +   W +L+  
Sbjct: 486 MTETALVDMYFKCGNLENAQKCFDCM-LQRDLVAWSTLIVG 525



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 190/410 (46%), Gaps = 32/410 (7%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           FN L+        ++  L  Y +M       D YT+P + KAC+  N    GL +H SVV
Sbjct: 17  FNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSVV 76

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
             GL ++ + G+ L++ Y K GC+   R+V + M  ++VV W +++  Y++ G  D A  
Sbjct: 77  VNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFS 136

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSPE------------------------------ 247
           + ++M    I+P + T+ SLLP ++                                   
Sbjct: 137 MFKQMRESGIQPTSVTLLSLLPGISKLPLLLCLHCLIILHGFESDLALSNSMVNMYGKCG 196

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
            +   + +F  +D +++VSWN +++ Y+      E + L   M++  I+P+  +  S L 
Sbjct: 197 RIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALS 256

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           A      L LG+ +H  + +  L  +  +E+ALV +Y +C  L  A  VF     +DVV 
Sbjct: 257 ASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVM 316

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           WT+MIS    +     A+ +F +M+ S + P +    S L+AC+  G  + G      + 
Sbjct: 317 WTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVL 376

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            Q  ++  I     LV +  +  K++++  +  +M +E +   W ++VA 
Sbjct: 377 RQ-GIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKM-VEKDLVSWNAIVAG 424



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 141/300 (47%), Gaps = 21/300 (7%)

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           S+N +++  +      + +  Y+ M+    + +A +  S+  AC +L+    G  +H+ V
Sbjct: 16  SFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
               L  +  + ++L+  YAK G +   R VFD M  ++VV WT++I +Y   G    A 
Sbjct: 76  VVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAF 135

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
           ++F +M  SG+ P S+  +S+L   S   LL        +   +  L         +V++
Sbjct: 136 SMFKQMRESGIQPTSVTLLSLLPGISKLPLLLCLHCLIILHGFESDLALS----NSMVNM 191

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD-----IGILAADHIFHLAPN 500
            G+ G++ +A  L + +    +   W SL++A   YS +      + +L A  I  + P+
Sbjct: 192 YGKCGRIADARRLFQSIDCR-DIVSWNSLLSA---YSKIGATEEILQLLQAMKIEDIKPD 247

Query: 501 QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQIIALPLRSSKCL 560
           +  +   LS    K    GD+ R+ K ++  G+    G +++ + +  ++ L LR  +CL
Sbjct: 248 KQTFCSALSASAIK----GDL-RLGKLVH--GLMLKDGLNIDQHVESALVVLYLR-CRCL 299


>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
          Length = 499

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 153/391 (39%), Positives = 232/391 (59%), Gaps = 38/391 (9%)

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS-KDVVTWNSMVAGYAQN 209
           Q+H  +V+ G   +      LV  Y  CG +  ARRV ++  +  DVV+WN M+ GY ++
Sbjct: 92  QLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKS 151

Query: 210 GRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNV 269
           G      D+ R                                +E+F  +  +N+VSW +
Sbjct: 152 G------DLAR-------------------------------ARELFDVMPGRNVVSWTM 174

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           +I  YA    P EA++++ +M+V GIEP+ +++ SVL ACGDL  + LG  +HR+V R+ 
Sbjct: 175 VIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRG 234

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           L   + L NA++DMY KCGS+ +A  VF+ M  + +V+WT+MI+ + + G G +AV LF 
Sbjct: 235 LCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGSEAVELFR 294

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           +M    + P+ I F++VLS CSH GL + GR+YFK M  QYK+ PR+EH+ C++DLLGRA
Sbjct: 295 RMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRA 354

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G + EA  LI+ MP + N  IWG+L+AA   + + ++G  A  H+  L P+ SG Y+LLS
Sbjct: 355 GCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQALLHLIELEPHNSGNYILLS 414

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           NIYA+  RW  V+ +R  M  +G++ +PGAS
Sbjct: 415 NIYAEQERWDAVRELRISMRDRGLRNVPGAS 445



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 88/165 (53%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y   G +   R +FD +  +NVV + ++I +Y       +A+ V++ M V G +PD    
Sbjct: 148 YVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVAL 207

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             VL AC     + +G  +H  V++ GL   +   N ++ MY KCG +K+A  V   M  
Sbjct: 208 LSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQ 267

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238
           K +VTW +M+AG+A +G   EA+++ R ME   + P+  T  ++L
Sbjct: 268 KSIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVL 312



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 89/193 (46%), Gaps = 5/193 (2%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y  CG +     VF+ +  K++V +  +I  +  + L  +A+ +++ M      P+  T+
Sbjct: 249 YVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITF 308

Query: 134 PCVLKACSGSNSLLVGLQIHCSVV-KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
             VL  CS      +G     ++V +  +   + +   ++ + G+ GCL EAR ++ DMP
Sbjct: 309 LAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMP 368

Query: 193 SK-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS 251
            K +   W +++A    +G  D  L     +  + ++P       LL ++     E   +
Sbjct: 369 FKANAAIWGALLAAARTHG--DTELGEQALLHLIELEPHNSGNYILLSNIY-AEQERWDA 425

Query: 252 VKEMFLKLDNKNL 264
           V+E+ + + ++ L
Sbjct: 426 VRELRISMRDRGL 438


>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 944

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 165/501 (32%), Positives = 274/501 (54%), Gaps = 34/501 (6%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y  CG++   R +F  +  +++V ++  + + V      + L +++ M   G  PD    
Sbjct: 344 YAKCGELKKARELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAIL 403

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             ++  C+  +++ +G  +HC  +K  ++ ++     LV+MY +      A  + N M  
Sbjct: 404 SILVSGCTEISNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQI 463

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS------------- 240
           KD+V WN+++ G+ + G    AL++   ++   I PD+ TM  L  +             
Sbjct: 464 KDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCL 523

Query: 241 ---VTNTSPENVLSVK----EMFLKLDN--------------KNLVSWNVMIAVYANNSM 279
              +  +  E+ + VK    +M+ K  +              K+ VSWNVMIA Y +N  
Sbjct: 524 HGGIEKSGFESDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMIAGYLHNGY 583

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
             EA+  + +M++  + PN ++  ++LPA   LS L      H  + R        + N+
Sbjct: 584 SNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSILREAMAFHTCIIRMGFLSCTLIGNS 643

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           L+DMYAKCG L  +   F +M  +D +SW +M+SAY M GQG  AVALFS M  S +  D
Sbjct: 644 LIDMYAKCGQLRYSEKCFHEMENKDTISWNAMLSAYAMHGQGELAVALFSVMQESNVRVD 703

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
           S++++SVLSAC H+GL++EG   F  M E++ + P +EH+AC+VDLLG AG  +E   L+
Sbjct: 704 SVSYISVLSACRHSGLIQEGWDIFASMCEKHHVEPSMEHYACMVDLLGCAGLFDEVLSLL 763

Query: 460 KQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519
            +M  EP+ R+WG+L+AAC ++SN+ +G +A  H+  L P    ++V+LS+IYA+ GRW 
Sbjct: 764 NKMTTEPDARVWGALLAACKIHSNVTLGEVAVHHLLKLEPRNPVHHVVLSDIYAQCGRWN 823

Query: 520 DVKRVRKFMNSKGIKKMPGAS 540
           D +R R  +N+ G+KK+PG S
Sbjct: 824 DARRTRSHINNHGLKKIPGYS 844



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 134/555 (24%), Positives = 250/555 (45%), Gaps = 77/555 (13%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           LH   I      +N +  LKL+ +      ++     F +I N +++ +N  I++Y   +
Sbjct: 19  LHTHHIFPIQQQNNNNHYLKLINSCKYINPLLQIHTHFLQIKNPSLILYNSFIKAYSKFH 78

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
            ++ A+++Y  +   G  PD +T+  VLKAC+ +     G+ I+  +V  GL+ +++ G 
Sbjct: 79  HFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDFHEGVNIYKDIVFNGLECDVYIGT 138

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            L+ M+ K GCL  AR V + MP KD V WN+M++G +Q+    EAL++   M+    + 
Sbjct: 139 SLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQMEGFEV 198

Query: 230 DADTMASLLPSVTNTSP-------------------------------ENVLSVKEMFLK 258
           D  ++ +L P+V+                                    +V S + +F +
Sbjct: 199 DKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSICGVVSNSLIDMYCKCGDVHSAQRVFDR 258

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +  ++ VSW  M+A Y  N    E + L  +M    ++ N ++V + L    ++  L  G
Sbjct: 259 MGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKG 318

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           ++I+ Y  +  L  ++ +   +V MYAKCG L +AR +F  +  +D+V+W++ +SA   +
Sbjct: 319 KEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVET 378

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YYFK--------IM 426
           G   + +++F  M   GL PD      ++S C+    +  G+    Y  K        ++
Sbjct: 379 GYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAIKADMESDISMV 438

Query: 427 TEQYKLVPRIEHFACLVDLLGRA------------------GKVEEAYDLIKQMPME--- 465
           T    +  R E F   + L  R                   G    A ++  ++ +    
Sbjct: 439 TTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGIL 498

Query: 466 PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY------YVLLSNIYAKAGRWG 519
           P+      L +AC +  ++D+G        H    +SG+       V L ++YAK G   
Sbjct: 499 PDSGTMVGLFSACAIMDDLDLGT-----CLHGGIEKSGFESDIHVKVALMDMYAKCGSLC 553

Query: 520 DVKRVRKFMNSKGIK 534
            V+R+  F+ +K +K
Sbjct: 554 SVERL--FLLTKHVK 566



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/514 (23%), Positives = 234/514 (45%), Gaps = 49/514 (9%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC   LD +  +   K      I+   L  +  IG  L+  +   G + + R+VFD++  
Sbjct: 108 ACTSALDFHEGVNIYKD-----IVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPV 162

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           K+ V +N +I     +    +AL ++  M + GF+ D  +   +  A S    +     I
Sbjct: 163 KDGVCWNAMISGLSQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSI 222

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  VV+  +   +   N L+ MY KCG +  A+RV + M  +D V+W +M+AGY +NG +
Sbjct: 223 HGYVVRRSICGVV--SNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCY 280

Query: 213 DEALDVCREMESLRIKPDADTMA-------------------------SLLPSVTNTSP- 246
            E L +  +M    +K +   +                           L+  +   +P 
Sbjct: 281 FEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPI 340

Query: 247 -------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                    +   +E+FL L+ ++LV+W+  ++       P E + ++  M+  G++P+ 
Sbjct: 341 VCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDK 400

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
             ++ ++  C ++S + LG+ +H Y  +  ++ ++ +   LV MY +    T A T+F++
Sbjct: 401 AILSILVSGCTEISNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNR 460

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
           M+ +D+V W ++I+ +   G  + A+ +F+++ +SG+ PDS   V + SAC+    L+ G
Sbjct: 461 MQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLG 520

Query: 420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAG---KVEEAYDLIKQMPMEPNERIWGSLVA 476
                 + E+      I     L+D+  + G    VE  + L K +    +E  W  ++A
Sbjct: 521 TCLHGGI-EKSGFESDIHVKVALMDMYAKCGSLCSVERLFLLTKHV---KDEVSWNVMIA 576

Query: 477 ACCL--YSNMDIGILAADHIFHLAPNQSGYYVLL 508
                 YSN  I       + ++ PN   +  +L
Sbjct: 577 GYLHNGYSNEAISTFRRMKLENVRPNLVTFVTIL 610



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 103/460 (22%), Positives = 211/460 (45%), Gaps = 50/460 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  CG +   + VFD +  ++ V +  ++  YV N  Y++ L +   M       +
Sbjct: 239 LIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMN 298

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
                  L   +    L  G +I+   +++GL  ++     +V MY KCG LK+AR +  
Sbjct: 299 KVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFL 358

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP--- 246
            +  +D+V W++ ++   + G   E L + + M+   +KPD   ++ L+   T  S    
Sbjct: 359 SLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGL 418

Query: 247 ------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                         E       +F ++  K++V WN +I  +  
Sbjct: 419 GKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFTK 478

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
              P  A++++ ++++ GI P++ ++  +  AC  +  L LG  +H  +E+   + ++ +
Sbjct: 479 YGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEKSGFESDIHV 538

Query: 337 ENALVDMYAKCGSLTEARTVFDQMR-CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           + AL+DMYAKCGSL     +F   +  +D VSW  MI+ Y  +G   +A++ F +M +  
Sbjct: 539 KVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLEN 598

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC------LVDLLGRA 449
           + P+ + FV++L A S+  +L E   +       +  + R+   +C      L+D+  + 
Sbjct: 599 VRPNLVTFVTILPAVSYLSILREAMAF-------HTCIIRMGFLSCTLIGNSLIDMYAKC 651

Query: 450 GKVEEAYDLIKQMPMEPNERI-WGSLVAACCLYSNMDIGI 488
           G++  +     +  ME  + I W ++++A  ++   ++ +
Sbjct: 652 GQLRYSEKCFHE--MENKDTISWNAMLSAYAMHGQGELAV 689



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 151/309 (48%), Gaps = 28/309 (9%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVD-------TRHVFDEITNKNVVFFNVLIRSYVNNYLYY 112
             S+  + + LM  Y  CG +         T+HV DE++      +NV+I  Y++N    
Sbjct: 532 FESDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVS------WNVMIAGYLHNGYSN 585

Query: 113 DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV 172
           +A+  ++ M +    P+  T+  +L A S  + L   +  H  ++++G       GN L+
Sbjct: 586 EAISTFRRMKLENVRPNLVTFVTILPAVSYLSILREAMAFHTCIIRMGFLSCTLIGNSLI 645

Query: 173 AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
            MY KCG L+ + +  ++M +KD ++WN+M++ YA +G+ + A+ +   M+   ++ D+ 
Sbjct: 646 DMYAKCGQLRYSEKCFHEMENKDTISWNAMLSAYAMHGQGELAVALFSVMQESNVRVDSV 705

Query: 233 TMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS-----WNVMIAVYANNSMPAEAVDLY 287
           +  S+L +  ++    +    ++F  +  K+ V      +  M+ +     +  E + L 
Sbjct: 706 SYISVLSACRHSGL--IQEGWDIFASMCEKHHVEPSMEHYACMVDLLGCAGLFDEVLSLL 763

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGR-KIHRYVERKKLQPNLRLEN-ALVDMYA 345
            +M     EP+A    ++L AC   S + LG   +H  +   KL+P   + +  L D+YA
Sbjct: 764 NKMTT---EPDARVWGALLAACKIHSNVTLGEVAVHHLL---KLEPRNPVHHVVLSDIYA 817

Query: 346 KCGSLTEAR 354
           +CG   +AR
Sbjct: 818 QCGRWNDAR 826


>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
 gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
          Length = 572

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 166/471 (35%), Positives = 259/471 (54%), Gaps = 37/471 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y ACG + D R VFD +  ++VV + V++ SY     Y +AL  +  M   G   D
Sbjct: 111 LVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLSD 170

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
                 VL AC     L  G  IH  ++   +  N    + L+ +Y  C  ++ A ++ N
Sbjct: 171 QLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKLYN 230

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            MP KD+V+  +MV GYA+N +F+ A                                  
Sbjct: 231 GMPRKDLVSSTAMVFGYARNRKFEIA---------------------------------- 256

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
              + +F  +  K++VSW+ MI+ YA+++ P EA+ L+  M+  GI P+ +++ SV+ AC
Sbjct: 257 ---RYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISAC 313

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
            +L +L   + IH +++   L   L + NAL+DM+AKCG +  A  +F++M  ++V++WT
Sbjct: 314 ANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWT 373

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           SMI+A+ M G G  A+ LF +M   G+ P+ + F+++L AC HAGL+ EGR  F  M +Q
Sbjct: 374 SMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQ 433

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y + P+ EH+ C+VDLLGRA  ++EA +LI+ M + PN  +WGSL+AAC ++ ++ +G  
Sbjct: 434 YGIEPKHEHYGCMVDLLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACWMHGDLKLGAF 493

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           AA  I  L PN  G  VLLS IY K+    D + VR  M  +G+ K  G S
Sbjct: 494 AAKKILQLDPNHDGASVLLSKIYMKSDNLNDAQEVRDVMKLQGVSKETGLS 544



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 171/374 (45%), Gaps = 26/374 (6%)

Query: 9   RHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGL 68
           RH  T K + + +L +   L++    + +++ Y    +++   A+ + N     +     
Sbjct: 185 RHLRTGKSIHSYMLVSD-ILINAHLSSALINLYASCASMEM--AEKLYNGMPRKDLVSST 241

Query: 69  KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
            ++  Y    +    R++FD +  K+VV ++ +I  Y ++    +AL ++ +M   G  P
Sbjct: 242 AMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRP 301

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D  T   V+ AC+   SL     IH  +   GL+  L   N L+ M+ KCG +  A  + 
Sbjct: 302 DEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIF 361

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
           N+MP K+V+TW SM+  +A +G    AL +  +M +  ++P+  T  +LL +  +     
Sbjct: 362 NEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGL-- 419

Query: 249 VLSVKEMFLKLDNKNLVS-----WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
           V   + +F  +  +  +      +  M+ +     +  EAV+L   M    + PN     
Sbjct: 420 VHEGRSLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVNLIESMH---LRPNVPVWG 476

Query: 304 SVLPAC---GDLSALLLGRKIHRYVERKKLQPNLRLENA---LVDMYAKCGSLTEARTVF 357
           S+L AC   GDL       K+  +  +K LQ +   + A   L  +Y K  +L +A+ V 
Sbjct: 477 SLLAACWMHGDL-------KLGAFAAKKILQLDPNHDGASVLLSKIYMKSDNLNDAQEVR 529

Query: 358 DQMRCQDVVSWTSM 371
           D M+ Q V   T +
Sbjct: 530 DVMKLQGVSKETGL 543



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 65/132 (49%), Gaps = 9/132 (6%)

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           +  ALV  YA CG + +AR VFD M  +DVVSW  M+ +Y  +    +A+  F+KM  SG
Sbjct: 107 VRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSG 166

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI---EHF-ACLVDLLGRAGK 451
           +  D +   +VLSAC H   L  G+         Y LV  I    H  + L++L      
Sbjct: 167 VLSDQLILATVLSACGHIRHLRTGKS-----IHSYMLVSDILINAHLSSALINLYASCAS 221

Query: 452 VEEAYDLIKQMP 463
           +E A  L   MP
Sbjct: 222 MEMAEKLYNGMP 233


>gi|218194384|gb|EEC76811.1| hypothetical protein OsI_14939 [Oryza sativa Indica Group]
          Length = 540

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 177/488 (36%), Positives = 263/488 (53%), Gaps = 66/488 (13%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+R Y ACG++ D R VFD + ++++V + V++  Y     Y +AL ++ +M    
Sbjct: 106 VGTALVRAYAACGRVEDARKVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSR 165

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             PD      VL  C+ + +L  G  IH  ++      +      L+ MY  C  ++ A 
Sbjct: 166 VVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDALIDAQVSCALMNMYASCADMEMAE 225

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           ++ N +  KD+V   +MV GYA+NG+ + A                        S+ N  
Sbjct: 226 KLYNRVSEKDIVLSTTMVYGYAKNGKVEIA-----------------------HSIFNGM 262

Query: 246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
           PE              K++VSW+ MIA YA +S P EA++L+  M+  G++P+ I++ S+
Sbjct: 263 PE--------------KDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVQPDEITMLSI 308

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           LP                            + NAL+DM++KCGSLT A  VF+ M  ++V
Sbjct: 309 LP----------------------------IGNALIDMFSKCGSLTLALDVFNAMPQKNV 340

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           V+WTS+I+A  M G G  A+ LF  M   G+ P+ + F+ +L AC HAGL+EEGR  FKI
Sbjct: 341 VTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKI 400

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M +QY++ P  EH+ C+VDLLGRA  + +A DLI+ M + PN  IWGSL+AAC ++ +++
Sbjct: 401 MVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLE 460

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMN 544
           +G  AA  I  L PN  G  VLLSNIYA+ G W DVK VR  M  +G  K  G S +E+N
Sbjct: 461 LGAFAAKKILELDPNHGGAQVLLSNIYAEYGNWNDVKEVRGVMKVQGTWKKKGCSWMELN 520

Query: 545 DQVQIIAL 552
             V   A+
Sbjct: 521 GSVHQFAV 528


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 170/502 (33%), Positives = 275/502 (54%), Gaps = 43/502 (8%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           +++  +K+HA  ++   L  +P +   LM  Y   G +     VF+E+  ++ V +N++I
Sbjct: 123 EVREGEKIHA-FVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMI 181

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFD-PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
             YV    + +A+ VY+ M +   + P+  T    L AC+   +L +G +IH   +   L
Sbjct: 182 SGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIH-DYIANEL 240

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           D     GN L+ MY KCGC+  AR + + M  K+V  W SMV GY   G+ D+A      
Sbjct: 241 DLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQA------ 294

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
                                          + +F +  ++++V W  MI  Y   +   
Sbjct: 295 -------------------------------RYLFERSPSRDVVLWTAMINGYVQFNHFE 323

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
           +A+ L+ +M++ G+EP+   V ++L  C  L AL  G+ IH Y++  +++ +  +  AL+
Sbjct: 324 DAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALI 383

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           +MYAKCG + ++  +F+ ++  D  SWTS+I    M+G+  +A+ LF  M   GL PD I
Sbjct: 384 EMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDI 443

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
            FV+VLSAC HAGL+EEGR  F  M+  Y + P +EH+ C +DLLGRAG ++EA +L+K+
Sbjct: 444 TFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKK 503

Query: 462 MPMEPNERI---WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
           +P + NE I   +G+L++AC  Y N+D+G   A  +  +  + S  + LL++IYA A RW
Sbjct: 504 LPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASADRW 563

Query: 519 GDVKRVRKFMNSKGIKKMPGAS 540
            DV++VR  M   GIKK+PG S
Sbjct: 564 EDVRKVRSKMKDLGIKKVPGYS 585



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 154/337 (45%), Gaps = 19/337 (5%)

Query: 210 GRFDEALDVCREMESLR----------IKPDADTMASLLPSVTNTSPENVLSVKEMFLKL 259
           G +   L  C+ M  L+          ++ D D +  L+    ++S  +      +F  +
Sbjct: 9   GTYISLLKSCKSMSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHI 68

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
            + +L  +N+MI  +        A+ L+ Q+   G+ P+  +   VL   G +  +  G 
Sbjct: 69  HHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGE 128

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
           KIH +V +  L+ +  + N+L+DMYA+ G +     VF++M  +D VSW  MIS Y    
Sbjct: 129 KIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCK 188

Query: 380 QGYDAVALFSKMLM-SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           +  +AV ++ +M M S   P+    VS LSAC+    LE G+     +  +  L P + +
Sbjct: 189 RFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIMGN 248

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
              L+D+  + G V  A ++   M ++ N   W S+V    +   +D     A ++F  +
Sbjct: 249 --ALLDMYCKCGCVSVAREIFDAMIVK-NVNCWTSMVTGYVICGQLD----QARYLFERS 301

Query: 499 PNQS-GYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534
           P++    +  + N Y +   + D   +   M  +G++
Sbjct: 302 PSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVE 338


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 189/581 (32%), Positives = 304/581 (52%), Gaps = 76/581 (13%)

Query: 41  YPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           + D++T K LHA + I   + ++  +    +  Y  C ++   R VFD   + NV  FN 
Sbjct: 21  HRDLRTGKSLHA-LYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNT 79

Query: 101 LIRSYVNN------YLYYD-------------------------ALHVYKNMSVHGFDPD 129
           LI +Y         +  +D                         A  ++  M     D D
Sbjct: 80  LISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMD 139

Query: 130 CYTYPCVLKACSGSNSLLVGL--QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
            +T   ++ AC G N   VGL  Q+H   V  GLD  +  GN L+  Y K G LKEARR+
Sbjct: 140 GFTLSGIITAC-GIN---VGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRI 195

Query: 188 LNDMPS-KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP 246
            + +   +D V+WNSMV  Y Q+    +AL++  EM    +  D  T+AS+L + TN   
Sbjct: 196 FHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQD 255

Query: 247 -----------------EN-----------------VLSVKEMFLKLDNKNLVSWNVMIA 272
                            +N                 +L  +++F ++ N +LV WN MI+
Sbjct: 256 LLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMIS 315

Query: 273 VYA-NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
            Y+    +  EA++ + Q++V G  P+  S+  V+ AC ++S+   GR++H    +  + 
Sbjct: 316 GYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIP 375

Query: 332 PN-LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
            N + + NAL+ MY+KCG+L +A+T+FD M   + VS+ SMI+ Y   G G+ ++ LF +
Sbjct: 376 SNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQR 435

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450
           ML  G  P +I F+SVL+AC+H G +E+G+ YF +M +++ + P   HF+C++DLLGRAG
Sbjct: 436 MLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAG 495

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSN 510
           K+ EA  LI+ +P +P    W +L+ AC ++ N+++ I AA+ +  L P  +  YV+L+N
Sbjct: 496 KLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLAN 555

Query: 511 IYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           IY+  GR  D   VRK M  +G+KK PG S +E+N ++ I 
Sbjct: 556 IYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIF 596



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 119/488 (24%), Positives = 206/488 (42%), Gaps = 78/488 (15%)

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
           +H F    + +   LK C     L  G  +H   +K  +  + +  N  + +Y KC  L 
Sbjct: 1   MHHFSSLLHNFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLS 60

Query: 183 EARRV-------------------------------LNDMPSKDVVTWNSMVAGYAQNGR 211
            ARRV                                ++MP  D V++N+++A YA+ G 
Sbjct: 61  AARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGD 120

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPS------------------------------V 241
              A  +  EM    +  D  T++ ++ +                              +
Sbjct: 121 TQPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALI 180

Query: 242 TNTSPENVL-SVKEMFLKL-DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
           T+ S    L   + +F  L ++++ VSWN M+  Y  +   ++A++LYL+M V G+  + 
Sbjct: 181 TSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDI 240

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS-LTEARTVFD 358
            ++ASVL A  ++  LL G + H  + +     N  + + L+D+Y+KCG  + + R VFD
Sbjct: 241 FTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFD 300

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYD-AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           ++   D+V W +MIS Y +     D A+  F ++ + G  PD  + V V+SACS+     
Sbjct: 301 EISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPS 360

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           +GR    +  +      RI     L+ +  + G + +A  L   MP E N   + S++A 
Sbjct: 361 QGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAG 419

Query: 478 CCLYSNMDIGILAADHIFH------LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531
              Y+   +G  +  H+F         P    +  +L+   A  GR  D K     M  K
Sbjct: 420 ---YAQHGMGFQSL-HLFQRMLEMGFTPTNITFISVLAAC-AHTGRVEDGKIYFNMMKQK 474

Query: 532 -GIKKMPG 538
            GI+   G
Sbjct: 475 FGIEPEAG 482


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 164/530 (30%), Positives = 291/530 (54%), Gaps = 47/530 (8%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+K  K++H   ++     ++  +   L+  Y  C  +  +R VFD +T ++VV +N +I
Sbjct: 141 DVKLGKEVHG-FVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMI 199

Query: 103 RSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
             Y    LY D   +Y+ M    GF P+  T   VL+AC  +  L  G+++H  +V   +
Sbjct: 200 SGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQV 259

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           + ++   N L+ +Y KCG L  AR + ++M  KD VT+ ++++G   +G  D++L++ R 
Sbjct: 260 EIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRG 319

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
           M++                                     + L +WN +I     N+   
Sbjct: 320 MKT-------------------------------------QILSTWNAVITGLVQNNRHE 342

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
             +DL  +M+  G  PNA++++SVL      S+L  G++IH Y  +     N+ +  A++
Sbjct: 343 GVLDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAII 402

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           DMYAK G L  A+ VFDQ + + +V WT++ISAY + G    A+ LF +ML  G+ PD +
Sbjct: 403 DMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPV 462

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
            F +VL+AC+H G++++    F+ M ++Y + P +EH+AC+V  LG+A ++ EA + + +
Sbjct: 463 TFTAVLAACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSK 522

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
           MP+EP+ ++WG+L+    + S++++G    D++F + P  +G YV+++N+Y++AGRW + 
Sbjct: 523 MPIEPSAKVWGALLHGASISSDVELGKSVCDYLFEIEPENTGNYVIMANLYSQAGRWKEA 582

Query: 522 KRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRSSKCLTTGPKNVPPI 570
             VR+ MN  G++K+PG+S +E ++        LRS     T  +NV  I
Sbjct: 583 DEVRERMNKVGLQKIPGSSWIETSE-------GLRSFIATDTCTENVEEI 625



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/430 (22%), Positives = 191/430 (44%), Gaps = 76/430 (17%)

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           DC  Y  +L   +     L   Q+H  ++   +    +  + LVA+Y K   L  AR V 
Sbjct: 23  DCGIYGHLLHHLTELRLPLQAKQLHARLILFSVTPENYLASKLVALYSKTNHLAFARYVF 82

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES------------------------ 224
           + +P K+  ++N+M+  Y+ + R  +ALD+   + S                        
Sbjct: 83  DQIPHKNTFSYNAMLISYSLHNRHGDALDLFSSLASSNLVNNISITCLLKSLSSFTLSDV 142

Query: 225 ----------LRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
                     LR   DAD           +   ++   +++F ++  +++VSWN MI+ Y
Sbjct: 143 KLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGY 202

Query: 275 ANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           +   +  +   LY +M +  G  PN ++V SVL ACG    L  G ++H+++   +++ +
Sbjct: 203 SQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEID 262

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM-- 391
           + + NAL+ +YAKCGSL  AR +FD+M  +D V++ ++IS   + G    ++ LF  M  
Sbjct: 263 ISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKT 322

Query: 392 --------LMSGLC---------------------PDSIAFVSVLSACSHAGLLEEGR-- 420
                   +++GL                      P+++   SVLS  ++   L+ G+  
Sbjct: 323 QILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEI 382

Query: 421 --YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
             Y  KI   +   V        ++D+  ++G +  A  +  Q   + +  IW ++++A 
Sbjct: 383 HSYAIKIGYHRNIYVA-----TAIIDMYAKSGYLRGAQRVFDQ-SKDRSLVIWTAIISAY 436

Query: 479 CLYSNMDIGI 488
            ++ + ++ +
Sbjct: 437 AVHGDANLAL 446


>gi|18409250|ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75168871|sp|Q9C507.1|PP111_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial; Flags: Precursor
 gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical protein; 27026-24663 [Arabidopsis thaliana]
 gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332196793|gb|AEE34914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 787

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 177/538 (32%), Positives = 296/538 (55%), Gaps = 37/538 (6%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++  + +H QI   +    + ++   L+  Y  CG ++ +  +F++I  KN V +  +I 
Sbjct: 218 LRIARSVHGQIT-RKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMIS 276

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           SY        AL  +  M   G +P+  T   VL +C     +  G  +H   V+  LD 
Sbjct: 277 SYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDP 336

Query: 164 NLFNGN-GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
           N  + +  LV +Y +CG L +   VL  +  +++V WNS+++ YA  G   +AL + R+M
Sbjct: 337 NYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQM 396

Query: 223 ESLRIKPDADTMASLLPSVTN--------------------------------TSPENVL 250
            + RIKPDA T+AS + +  N                                +   +V 
Sbjct: 397 VTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDVSDEFVQNSLIDMYSKSGSVD 456

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
           S   +F ++ ++++V+WN M+  ++ N    EA+ L+  M    +E N ++  +V+ AC 
Sbjct: 457 SASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACS 516

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
            + +L  G+ +H  +    L+ +L  + AL+DMYAKCG L  A TVF  M  + +VSW+S
Sbjct: 517 SIGSLEKGKWVHHKLIISGLK-DLFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSS 575

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           MI+AYGM G+   A++ F++M+ SG  P+ + F++VLSAC H+G +EEG+YYF +M + +
Sbjct: 576 MINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLM-KSF 634

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            + P  EHFAC +DLL R+G ++EAY  IK+MP   +  +WGSLV  C ++  MDI    
Sbjct: 635 GVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAI 694

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
            + +  +  + +GYY LLSNIYA+ G W + +R+R  M S  +KK+PG +++E++ +V
Sbjct: 695 KNDLSDIVTDDTGYYTLLSNIYAEEGEWEEFRRLRSAMKSSNLKKVPGYSAIEIDQKV 752



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 199/437 (45%), Gaps = 76/437 (17%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           ++ + +LHA +++   L  +P    KL+ +Y   G    +R VF+     +   + VLI+
Sbjct: 14  LRLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIK 73

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS-LLVGLQIHCSVVKVGLD 162
             V  +L   A+ +Y  +         + +P VL+AC+GS   L VG ++H  ++K G+D
Sbjct: 74  CNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGGKVHGRIIKGGVD 133

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
                                           D V   S++  Y Q G   +A       
Sbjct: 134 -------------------------------DDAVIETSLLCMYGQTGNLSDA------- 155

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                                         +++F  +  ++LV+W+ +++    N    +
Sbjct: 156 ------------------------------EKVFDGMPVRDLVAWSTLVSSCLENGEVVK 185

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A+ ++  M   G+EP+A+++ SV+  C +L  L + R +H  + RK    +  L N+L+ 
Sbjct: 186 ALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLLT 245

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MY+KCG L  +  +F+++  ++ VSWT+MIS+Y        A+  FS+M+ SG+ P+ + 
Sbjct: 246 MYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVT 305

Query: 403 FVSVLSACSHAGLLEEGR--YYFKIMTEQYKLVPRIEHFA-CLVDLLGRAGKVEEAYDLI 459
             SVLS+C   GL+ EG+  + F +  E   L P  E  +  LV+L    GK+ +   ++
Sbjct: 306 LYSVLSSCGLIGLIREGKSVHGFAVRRE---LDPNYESLSLALVELYAECGKLSDCETVL 362

Query: 460 KQMPMEPNERIWGSLVA 476
           + +  + N   W SL++
Sbjct: 363 RVVS-DRNIVAWNSLIS 378


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 165/408 (40%), Positives = 238/408 (58%), Gaps = 46/408 (11%)

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKC--GCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
           HC  VK G+  + +  N +++ Y KC  G L  A ++ ++MP KD VT ++M+  Y    
Sbjct: 1   HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAY---- 56

Query: 211 RFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVM 270
            F+ A  V   M                       PE              K++V+WN +
Sbjct: 57  -FESAYKVFELM-----------------------PE--------------KDIVAWNSV 78

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
           I  +A N  P EA+ LY +M   G+EP+  ++ S+L AC +L+ L+LGR+ H Y+ +  L
Sbjct: 79  INGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYMVKVGL 138

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYDAVALFS 389
             NL   NAL+D+YAKCG+++EAR +FD+M  + +VVSWTS+I    ++G G +A+  F 
Sbjct: 139 NKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALEHFK 198

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
            M   GL P  I FV VL ACSH G++ EG  YFK M EQY +VPRIEH+ C+VDLLGRA
Sbjct: 199 DMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMVDLLGRA 258

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G ++EAYD I+ MP++PN  IW +L+ AC ++ ++ +G  A   +  L P  SG YVLLS
Sbjct: 259 GLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPKDSGDYVLLS 318

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           N+YA   RW DV  VR+ M S+G++K PG S VE+ + V    +  R+
Sbjct: 319 NLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRT 366



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 11/239 (4%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           VF+ +  K++V +N +I  +  N    +AL +YK M   G +PD +T   +L AC+   +
Sbjct: 63  VFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELAT 122

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVA 204
           L++G + H  +VKVGL+ NL   N L+ +Y KCG + EAR++ ++M   ++VV+W S++ 
Sbjct: 123 LVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIV 182

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS-----VTNTSPENVLSVKEMFLKL 259
           G A NG   EAL+  ++ME   + P   T   +L +     + N   E    +KE +  +
Sbjct: 183 GLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIV 242

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
               +  +  M+ +     +  EA D    M    ++PNA+   ++L AC     L LG
Sbjct: 243 --PRIEHYGCMVDLLGRAGLLKEAYDYIQDMP---LQPNAVIWRTLLGACTIHGHLGLG 296



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 29/174 (16%)

Query: 53  QIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI-TNKNVVFFNVLIRSYVNNYLY 111
           ++ +N++LH+N +    L+  Y  CG + + R +FDE+   +NVV +  LI     N   
Sbjct: 135 KVGLNKNLHANNA----LLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFG 190

Query: 112 YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY-------- 163
            +AL  +K+M   G  P   T+  VL ACS           HC +V  G +Y        
Sbjct: 191 KEALEHFKDMEREGLVPSEITFVGVLYACS-----------HCGIVNEGFEYFKRMKEQY 239

Query: 164 ----NLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRF 212
                + +   +V + G+ G LKEA   + DMP + + V W +++     +G  
Sbjct: 240 DIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHL 293


>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g15300-like [Glycine max]
          Length = 555

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 175/507 (34%), Positives = 279/507 (55%), Gaps = 18/507 (3%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKL-----MRTYGACGQMVDTRH---VFDEITNKN 94
           ++ TL+++HA +I+N    SN     KL     M   G       T++   +F +I   +
Sbjct: 13  NLGTLRQIHALMIVNG-FTSNVGFLRKLVLTTAMSMVGPAATTAVTQYAVQMFAQIPQPD 71

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
              +N  IR    ++    A+ +Y  M+     PD +T+P VLKAC+    +  G  +H 
Sbjct: 72  TFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTKLFWVNTGSVVHG 131

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            V ++G   N+   N L+  + KCG LK A  + +D    DVV W++++AGYAQ G    
Sbjct: 132 RVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSALIAGYAQRGDLSV 191

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
           A  +  EM      P  D ++  +     T    +   + +F +   K++VSWN M+  Y
Sbjct: 192 ARKLFDEM------PKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGY 245

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH-RYVERKKLQPN 333
             +++  EA++L+ +M   G  P+ +++ S+L AC DL     G K+H + +E  K + +
Sbjct: 246 VLHNLNQEALELFDEMCEVGECPDEVTMLSLLSACADLGDX--GEKVHAKIMELNKGKLS 303

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
             L NALVDMYAKCG++ +   VF  +R +D+VSW S+I      G   +++ LF +M  
Sbjct: 304 TLLGNALVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQR 363

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
           + +CPD I FV VL+ACSH G ++EG  YF +M  +YK+ P I H  C+VD+L RAG ++
Sbjct: 364 TKVCPDEITFVGVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLK 423

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA+D I  M +EPN  +W SL+ AC ++ ++++   A + +  +  +QSG YVLLSN+YA
Sbjct: 424 EAFDFIASMKIEPNAIVWRSLLGACKVHGDVELAKRATEQLLRMRVDQSGDYVLLSNVYA 483

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGAS 540
             G W   + VRK M+  G+ K  G+S
Sbjct: 484 SHGEWDGAENVRKLMDDNGVTKTRGSS 510


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 160/500 (32%), Positives = 282/500 (56%), Gaps = 41/500 (8%)

Query: 89  EITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLV 148
           E +  N+V ++ +I  +  N    +AL +   M   GF+P+  T   VL AC+   +L +
Sbjct: 5   ENSKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNL 64

Query: 149 GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
           G +IH  V + G   N F  NGLV +Y +C  +  A ++ +    K+VV++N+M+ GY +
Sbjct: 65  GKEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCE 124

Query: 209 NGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT--SPENVLSVKEMFLKLDNKNLVS 266
           NG  ++A ++  +ME   +  D  +  S++    +     E++ + +  F  +  ++  +
Sbjct: 125 NGNVEKAKELFDQME--LVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTAT 182

Query: 267 WNVMIAVYA-----------------------------------NNSMPAEAVDLYLQME 291
           WNV+I+ YA                                    N     A+ L+ +M+
Sbjct: 183 WNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQ 242

Query: 292 VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351
              + P+  +V  +LPAC  L+ +  G+++H +  R+  + ++ +  ALVDMYAKCGS+ 
Sbjct: 243 TSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIK 302

Query: 352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
            A  V++++   ++VS  +M++AY M G G + +ALF  ML +G  PD + F+SVLS+C 
Sbjct: 303 HAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCV 362

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIW 471
           HAG +E G  +F +MT  Y + P ++H+ C+VDLL RAG+++EAY+L+K++P +P+  +W
Sbjct: 363 HAGAVETGHEFFDLMT-YYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMW 421

Query: 472 GSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531
           G+L+  C ++ N+++G +AA+ +  L PN +G YVLL+N+YA AGRW D+ R R+ +  +
Sbjct: 422 GALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDR 481

Query: 532 GIKKMPGAS-VEMNDQVQII 550
           G+ K PG S +E  + + + 
Sbjct: 482 GMHKSPGCSWIEDREDIHVF 501



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 158/375 (42%), Gaps = 61/375 (16%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H  +  +  + SNP +   L+  Y  C  M     +F   + KNVV +N +I  Y  
Sbjct: 66  KEIHGYVTRHGFM-SNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCE 124

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ---IHCSVVKVG---- 160
           N     A  ++  M + G D   +            NS++ G     + C  +K      
Sbjct: 125 NGNVEKAKELFDQMELVGKDTISW------------NSMISGYADNLLKCEDLKAAQLAF 172

Query: 161 ---LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK----DVVTWNSMVAGYAQNGRFD 213
               + +    N L++ Y  C  L+  + ++  M       +V TWN +++G+ +NG  +
Sbjct: 173 DGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNE 232

Query: 214 EALDVCREMESLRIKPDADTMASLLP------SVTNTSPENVLSVK-------------- 253
            AL +  EM++  ++PD  T+  +LP      ++      +  S++              
Sbjct: 233 LALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALV 292

Query: 254 -------------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                        +++ ++ N NLVS N M+  YA +    E + L+  M  +G  P+ +
Sbjct: 293 DMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHV 352

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           +  SVL +C    A+  G +    +    + P+L+    +VD+ ++ G L EA  +  ++
Sbjct: 353 TFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKI 412

Query: 361 -RCQDVVSWTSMISA 374
            R  D V W +++  
Sbjct: 413 PRKPDSVMWGALLGG 427



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 107/218 (49%), Gaps = 11/218 (5%)

Query: 27  TLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHV 86
           +++SG A  D L K  D+K      AQ+  +     + +    L+  Y  C Q+ + +++
Sbjct: 150 SMISGYA--DNLLKCEDLKA-----AQLAFDGVTERDTATWNVLISGYACCNQLENIQNL 202

Query: 87  FDEITNK----NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
             ++       NV  +N +I  +V N     AL ++  M      PD YT   +L AC+ 
Sbjct: 203 IQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACAR 262

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
             ++  G Q+H   ++ G + ++  G  LV MY KCG +K A +V N + + ++V+ N+M
Sbjct: 263 LATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAM 322

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           +  YA +G  DE + + R M     +PD  T  S+L S
Sbjct: 323 LTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSS 360


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 183/560 (32%), Positives = 296/560 (52%), Gaps = 43/560 (7%)

Query: 33  ACNDILDKYPDIKTLK---KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFD- 88
           AC   L     IK L    ++H   ++ + + S+  +   L+  Y  CG + +  +VF+ 
Sbjct: 144 ACLAALSSCASIKCLTHGLEIHG-FLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFER 202

Query: 89  ----EITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
               E+  +N+  +NV+I  YV+N     AL ++  M   G  PD  T   VL  CS   
Sbjct: 203 IRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLL 262

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
            L VG QIH  ++ +GLD ++  G  L+ MY KCG  + + ++     + ++V W S++ 
Sbjct: 263 DLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVML 322

Query: 205 GYAQNGRFDEALDVCREM-------------------ESLRIKP--------------DA 231
             AQNG  +EAL+   E                      L +KP              D+
Sbjct: 323 NCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFDS 382

Query: 232 DTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
           D               ++   +++F  L  ++LVSWN +I+ +A N    EA+  +  M+
Sbjct: 383 DVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQNKCADEALKAFRDMQ 442

Query: 292 VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351
              I+PN +++A +L  C  LS ++L +++H Y+ R   + N  + N+L+  YAKCG + 
Sbjct: 443 SKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRHWFETNALVNNSLISAYAKCGDIH 502

Query: 352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
            +RTVF+++  ++ V+W S++  +GM G+  +  A F KM  + + PD   F S+LS+CS
Sbjct: 503 SSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFATFEKMKEANIKPDHGTFTSLLSSCS 562

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIW 471
           H+G ++ G  YF  M E Y L PR+E + C+VDLLGRAG + +AYDLI  MP  P++RIW
Sbjct: 563 HSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMVDLLGRAGNLNQAYDLIMSMPCSPDDRIW 622

Query: 472 GSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531
           GSL+A+C  + N  +  + A+HIF L  +  GY VLL+N+Y  +G   +V RVR  +   
Sbjct: 623 GSLLASCKNHGNTKLAEVVANHIFELDASSVGYRVLLANLYEDSGNLNEVFRVRTDIKQM 682

Query: 532 GIKKMPGAS-VEMNDQVQII 550
           G+KK PG S +E+++ + I 
Sbjct: 683 GLKKQPGCSWIEVDNSIHIF 702



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 124/534 (23%), Positives = 229/534 (42%), Gaps = 57/534 (10%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D+   K++H  ++    L  +  +   L+  Y  CG   +   +F+ +  ++ V +N +I
Sbjct: 54  DVNKGKQIHGHLLKFGFLQ-DIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMI 112

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCV--LKACSGSNSLLVGLQIHCSVVKVG 160
             +  +  Y  +L +++ M             C+  L +C+    L  GL+IH  +VK G
Sbjct: 113 SGFCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKG 172

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVL-----NDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           +D + F  + L+ MY KCG +K A  V      N++  +++  WN M+ GY  N     A
Sbjct: 173 VDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLA 232

Query: 216 LDVCREMESLRIKPDADTM-------ASLLPSVTNTSPENVL-------------SVKEM 255
           L++  EM  L I PD+ T+       + LL          ++             ++ EM
Sbjct: 233 LELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEM 292

Query: 256 FLKL-------------DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
           + K               N NLV W  ++   A N  P EA++ + +  +    P+ + +
Sbjct: 293 YFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVIL 352

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            + L AC  LS    G  IH +  +     ++ +  ALVD Y KCG +  A+ VF  +  
Sbjct: 353 LAALRACSFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLST 412

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL----EE 418
           +D+VSW ++IS +  +    +A+  F  M    + P+++    +LS C+H  ++    E 
Sbjct: 413 RDLVSWNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEV 472

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
             Y  +   E   LV        L+    + G +  +  + +++P+  NE  W S++   
Sbjct: 473 HCYLLRHWFETNALVNN-----SLISAYAKCGDIHSSRTVFEKLPVR-NEVTWNSILLGF 526

Query: 479 CLYSNMDIGILAADHI--FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530
            ++   D      + +   ++ P+   +  LLS+        G V    K+ NS
Sbjct: 527 GMHGRTDEMFATFEKMKEANIKPDHGTFTSLLSS----CSHSGKVDAGWKYFNS 576



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 160/388 (41%), Gaps = 78/388 (20%)

Query: 99  NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY-PCVLKACSGSNSLLVGLQIHCSVV 157
           N +I+    +  + DA+ VY +    GF  + + + PC++KA  G   +  G QIH  ++
Sbjct: 7   NRMIKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQIHGHLL 66

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           K G                                 +D+   NS++  Y + G    A+D
Sbjct: 67  KFGF-------------------------------LQDIFVKNSLLGMYWKCGAGGNAVD 95

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
                                                MF +++ ++ VSWN MI+ +  +
Sbjct: 96  -------------------------------------MFERMEERDSVSWNTMISGFCQS 118

Query: 278 SMPAEAVDLYLQM--EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
               +++ ++ +M  E  G   N ++  + L +C  +  L  G +IH ++ +K +  +  
Sbjct: 119 GDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEF 178

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVS-----WTSMISAYGMSGQGYDAVALFSK 390
           L +AL++MY KCG +  A  VF+++R  ++V      W  MI  Y  +     A+ LF +
Sbjct: 179 LVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVE 238

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450
           ML  G+ PDS   V VL  CS    L  G+    ++     L   +     L+++  + G
Sbjct: 239 MLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLIL-GLGLDDDVRVGTALMEMYFKCG 297

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAAC 478
             E +  + K+     N  +WGS++  C
Sbjct: 298 DPETSLQIFKR-SQNHNLVMWGSVMLNC 324


>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 764

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 176/531 (33%), Positives = 282/531 (53%), Gaps = 34/531 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++  ++ LH   I+   + S+ ++   ++  YG C  +  +R +FD +  +++V +N L+
Sbjct: 182 ELAHVQCLHGSAILYGFM-SDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLV 240

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            +Y       + L + K M + GF+PD  T+  VL   +    L +G  +H  +++   D
Sbjct: 241 SAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQILRTCFD 300

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            +      L+ MY K G +  A R+      KDVV W +M++G  QNG  D+AL V R+M
Sbjct: 301 LDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADKALAVFRQM 360

Query: 223 ESLRIKPDADTMASLLPSVTN-------TSPENVLSVKEM-------------------- 255
               +K    TMAS++ +          TS    +   E+                    
Sbjct: 361 LKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIATQNSLVTMHAKCGHL 420

Query: 256 ------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                 F K++ +NLVSWN MI  YA N    +A+ L+ +M      P++I++ S+L  C
Sbjct: 421 DQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGC 480

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
                L LG+ IH +V R  L+P + ++ +LVDMY KCG L  A+  F+QM   D+VSW+
Sbjct: 481 ASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDIAQRCFNQMPSHDLVSWS 540

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           ++I  YG  G+G  A+  +SK L SG+ P+ + F+SVLS+CSH GL+E+G   ++ MT  
Sbjct: 541 AIIVGYGYHGKGETALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTRD 600

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           + + P +EH AC+VDLL RAG+VEEAY+L K+   +P   + G ++ AC    N ++G  
Sbjct: 601 FGIAPNLEHHACVVDLLSRAGRVEEAYNLYKKKFSDPVLDVLGIILDACRANGNNELGDT 660

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            A+ I  L P  +G +V L++ YA   +W +V      M S G+KK+PG S
Sbjct: 661 IANDILMLKPMDAGNFVQLAHCYASINKWEEVGEAWTHMRSLGLKKIPGWS 711



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 213/449 (47%), Gaps = 42/449 (9%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           LH +I+++  L  +  I   L+  Y   G     R VFD +  +NVV +  +I  Y    
Sbjct: 91  LHQRILVSG-LSLDAYIASSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTG 149

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ-IHCSVVKVGLDYNLFNG 168
              +A  ++  M   G  P   T   +L   S     L  +Q +H S +  G   ++   
Sbjct: 150 RVPEAFSLFDEMRRQGIQPSSVTMLSLLFGVSE----LAHVQCLHGSAILYGFMSDINLS 205

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           N +++MYGKC  ++ +R++ + M  +D+V+WNS+V+ YAQ G   E L + + M     +
Sbjct: 206 NSMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFE 265

Query: 229 PDADTMASLLPSVTNTSPE----------------------------------NVLSVKE 254
           PD  T  S+L SV  +  E                                  N+     
Sbjct: 266 PDPQTFGSVL-SVAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFR 324

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           MF +  +K++V W  MI+    N    +A+ ++ QM   G++ +  ++ASV+ AC  L +
Sbjct: 325 MFERSLDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGS 384

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
             LG  +H Y+ R +L  ++  +N+LV M+AKCG L ++  VFD+M  +++VSW +MI+ 
Sbjct: 385 YNLGTSVHGYMFRHELPMDIATQNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITG 444

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
           Y  +G    A+ LF++M      PDSI  VS+L  C+  G L  G++    +     L P
Sbjct: 445 YAQNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRN-GLRP 503

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
            I     LVD+  + G ++ A     QMP
Sbjct: 504 CILVDTSLVDMYCKCGDLDIAQRCFNQMP 532



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 191/410 (46%), Gaps = 32/410 (7%)

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           FN +I  + +   +   L  Y +M       D YT+P +LKACS  N   +GL +H  ++
Sbjct: 37  FNAIINHHSSQGAHRQVLATYASMLKTHVPSDAYTFPSLLKACSSLNLFSLGLSLHQRIL 96

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
             GL  + +  + L+  Y K G    AR+V + MP ++VV W S++  Y++ GR  EA  
Sbjct: 97  VSGLSLDAYIASSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFS 156

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSP------------------------------E 247
           +  EM    I+P + TM SLL  V+  +                                
Sbjct: 157 LFDEMRRQGIQPSSVTMLSLLFGVSELAHVQCLHGSAILYGFMSDINLSNSMLSMYGKCR 216

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
           N+   +++F  +D ++LVSWN +++ YA      E + L   M + G EP+  +  SVL 
Sbjct: 217 NIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLS 276

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
                  L LGR +H  + R     +  +E +L+ MY K G++  A  +F++   +DVV 
Sbjct: 277 VAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVL 336

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           WT+MIS    +G    A+A+F +ML  G+   +    SV++AC+  G    G      M 
Sbjct: 337 WTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMF 396

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            +++L   I     LV +  + G ++++  +  +M  + N   W +++  
Sbjct: 397 -RHELPMDIATQNSLVTMHAKCGHLDQSSIVFDKMN-KRNLVSWNAMITG 444



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 11/215 (5%)

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           S+N +I  +++     + +  Y  M    +  +A +  S+L AC  L+   LG  +H+ +
Sbjct: 36  SFNAIINHHSSQGAHRQVLATYASMLKTHVPSDAYTFPSLLKACSSLNLFSLGLSLHQRI 95

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
               L  +  + ++L++ YAK G    AR VFD M  ++VV WTS+I  Y  +G+  +A 
Sbjct: 96  LVSGLSLDAYIASSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAF 155

Query: 386 ALFSKMLMSGLCPDSIAFVSVL---SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL 442
           +LF +M   G+ P S+  +S+L   S  +H   L      +  M++       I     +
Sbjct: 156 SLFDEMRRQGIQPSSVTMLSLLFGVSELAHVQCLHGSAILYGFMSD-------INLSNSM 208

Query: 443 VDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           + + G+   +E +  L   M  + +   W SLV+A
Sbjct: 209 LSMYGKCRNIEYSRKLFDYMD-QRDLVSWNSLVSA 242


>gi|302817788|ref|XP_002990569.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
 gi|300141737|gb|EFJ08446.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
          Length = 564

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 173/493 (35%), Positives = 268/493 (54%), Gaps = 37/493 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+ H++ +    L S+  +   LM  YG CG   + R +FD I  KNVV +NV+I +Y  
Sbjct: 79  KQFHSRFV-ESGLESSLILDSALMNMYGRCGSAEEARKIFDRIPVKNVVCWNVMIAAYAQ 137

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N  + +AL +Y +M++    PD  T+  VL AC+    L  G  IH  VV  GL+ + F 
Sbjct: 138 NGHFSEALELYYDMNL---KPDRVTFLNVLHACT----LESGRLIHQDVVSAGLERDKFV 190

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           GN LV M+GKCG L +A+RV + +  +DV++WN++++ Y Q G   EA ++ + M+   +
Sbjct: 191 GNALVNMFGKCGSLSDAKRVFDRIAFRDVISWNALMSVYIQQGHRKEAFELFKRMDKAGL 250

Query: 228 KPDADTMASLLPS------------------------VTNT--SPENVLSVKE---MFLK 258
           +P++ T  SLLP+                        V NT  +  N  S+++   +F +
Sbjct: 251 QPNSVTYLSLLPACSSLEQLREIHQELADQGLEQDEQVGNTLITAYNKFSLEDSVAVFER 310

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +  +++VSW  MI     +     A+DLY +M V G+ P+A+++   L AC  +  L  G
Sbjct: 311 MKRRSVVSWTCMIMGMVEHGYGGRALDLYREMVVEGVRPDAVALVCALDACTSVENLAEG 370

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           RKIHR VE   +  ++ +  A+V+MY KCG   EA  VF  M+   V +W S+I AY   
Sbjct: 371 RKIHRLVEGTTMVTDVFVATAVVNMYGKCGKFAEAEAVFQGMKTTTVATWNSLIGAYAQH 430

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           G   DA+ L+ +M +SG  PD +  +  L ACSH GLL+  R ++  M E Y++     H
Sbjct: 431 GHATDALKLYERMELSGTRPDGVTLLCALFACSHLGLLDRAREFYSGMVEDYQVEAVPAH 490

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
           F CLVDL  RAG ++EA +LI  MP+ P+   W +L+ AC  +++M+ G  AA     L 
Sbjct: 491 FGCLVDLFCRAGWIDEAEELIASMPVRPHISAWTALLNACKAHNDMERGAWAACKAHELD 550

Query: 499 PNQSGYYVLLSNI 511
             +S  +V+LS  
Sbjct: 551 SRRSSPFVVLSGF 563



 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 140/434 (32%), Positives = 231/434 (53%), Gaps = 39/434 (8%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYT 132
           YG CG + + R VF+ I   +   +N+++ +Y NN     AL ++K M  VHG   D  T
Sbjct: 2   YGKCGSVEEARAVFNSIKRSSCFSWNLMLGAYCNNGSGDQALELFKQMVDVHGIRADRVT 61

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           +     ACS   SL  G Q H   V+ GL+ +L   + L+ MYG+CG  +EAR++ + +P
Sbjct: 62  FVTAATACSLVGSLEEGKQFHSRFVESGLESSLILDSALMNMYGRCGSAEEARKIFDRIP 121

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP----EN 248
            K+VV WN M+A YAQNG F EAL++  +M    +KPD  T  ++L + T  S     ++
Sbjct: 122 VKNVVCWNVMIAAYAQNGHFSEALELYYDMN---LKPDRVTFLNVLHACTLESGRLIHQD 178

Query: 249 VLS-------------------------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
           V+S                          K +F ++  ++++SWN +++VY       EA
Sbjct: 179 VVSAGLERDKFVGNALVNMFGKCGSLSDAKRVFDRIAFRDVISWNALMSVYIQQGHRKEA 238

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
            +L+ +M+  G++PN+++  S+LPAC  L  L   R+IH+ +  + L+ + ++ N L+  
Sbjct: 239 FELFKRMDKAGLQPNSVTYLSLLPACSSLEQL---REIHQELADQGLEQDEQVGNTLITA 295

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
           Y K  SL ++  VF++M+ + VVSWT MI      G G  A+ L+ +M++ G+ PD++A 
Sbjct: 296 YNKF-SLEDSVAVFERMKRRSVVSWTCMIMGMVEHGYGGRALDLYREMVVEGVRPDAVAL 354

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           V  L AC+    L EGR   +++ E   +V  +     +V++ G+ GK  EA  + + M 
Sbjct: 355 VCALDACTSVENLAEGRKIHRLV-EGTTMVTDVFVATAVVNMYGKCGKFAEAEAVFQGMK 413

Query: 464 MEPNERIWGSLVAA 477
                  W SL+ A
Sbjct: 414 T-TTVATWNSLIGA 426



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 151/279 (54%), Gaps = 41/279 (14%)

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR-IKPD-- 230
           MYGKCG ++EAR V N +      +WN M+  Y  NG  D+AL++ ++M  +  I+ D  
Sbjct: 1   MYGKCGSVEEARAVFNSIKRSSCFSWNLMLGAYCNNGSGDQALELFKQMVDVHGIRADRV 60

Query: 231 ----ADTMASLLPSV----------TNTSPENVL-----------------SVKEMFLKL 259
               A T  SL+ S+            +  E+ L                   +++F ++
Sbjct: 61  TFVTAATACSLVGSLEEGKQFHSRFVESGLESSLILDSALMNMYGRCGSAEEARKIFDRI 120

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
             KN+V WNVMIA YA N   +EA++LY  M    ++P+ ++  +VL AC     L  GR
Sbjct: 121 PVKNVVCWNVMIAAYAQNGHFSEALELYYDMN---LKPDRVTFLNVLHAC----TLESGR 173

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
            IH+ V    L+ +  + NALV+M+ KCGSL++A+ VFD++  +DV+SW +++S Y   G
Sbjct: 174 LIHQDVVSAGLERDKFVGNALVNMFGKCGSLSDAKRVFDRIAFRDVISWNALMSVYIQQG 233

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
              +A  LF +M  +GL P+S+ ++S+L ACS    L E
Sbjct: 234 HRKEAFELFKRMDKAGLQPNSVTYLSLLPACSSLEQLRE 272



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 3/136 (2%)

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML-MSGLCPDSI 401
           MY KCGS+ EAR VF+ ++     SW  M+ AY  +G G  A+ LF +M+ + G+  D +
Sbjct: 1   MYGKCGSVEEARAVFNSIKRSSCFSWNLMLGAYCNNGSGDQALELFKQMVDVHGIRADRV 60

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
            FV+  +ACS  G LEEG+ +     E   L   +   + L+++ GR G  EEA  +  +
Sbjct: 61  TFVTAATACSLVGSLEEGKQFHSRFVES-GLESSLILDSALMNMYGRCGSAEEARKIFDR 119

Query: 462 MPMEPNERIWGSLVAA 477
           +P++ N   W  ++AA
Sbjct: 120 IPVK-NVVCWNVMIAA 134


>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
 gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 169/497 (34%), Positives = 264/497 (53%), Gaps = 40/497 (8%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           L+++HA  +    L+    I    +   G+  +M     +F +  N  ++ FN +I+ Y 
Sbjct: 25  LREIHAHFL-RHGLNQLNQILSHFVSICGSLNKMAYANRIFKQTQNPTIILFNAMIKGYS 83

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
            N  + ++  ++ +M   G  PD YT   +LKACS    L +G  +H  V+ VG +    
Sbjct: 84  LNGPFEESFRLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQLGKCMHKEVLVVGFEGFSA 143

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
              G++ +Y  CG +++A +V ++M  +DV+ WN M+ G+ + G  D  L + R+M    
Sbjct: 144 IRIGVIELYSSCGVMEDAEKVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRK-- 201

Query: 227 IKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
                                              +++VSWN+MI+  A +   +EA+ L
Sbjct: 202 -----------------------------------RSVVSWNIMISCLAQSRRDSEALGL 226

Query: 287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL-RLENALVDMYA 345
           +  M   G +P+  +V +VLP C  L ++ +G+ IH Y +   L  +   + NALVD Y 
Sbjct: 227 FHDMLDWGFKPDEATVVTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYN 286

Query: 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
           K G    AR VFD+M  ++V+SW ++IS   ++G G   V L  +M+  G+ P+   FV 
Sbjct: 287 KSGMFETARRVFDEMPRKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDATFVG 346

Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP-M 464
           VLS C+HAGL E GR     M E +++ P++EH+ C+VDLLGR+G V EAYDLI+ MP  
Sbjct: 347 VLSCCAHAGLFERGRELLASMVEHHQIEPKLEHYGCMVDLLGRSGCVREAYDLIRIMPGG 406

Query: 465 EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV 524
            PN  +WGSL++AC  + ++++  LA   +  L P  SG YVLLSN+YA+  RW  V  V
Sbjct: 407 APNAALWGSLLSACRTHGDVELAHLAVKELIDLEPWNSGNYVLLSNMYAEEERWDKVANV 466

Query: 525 RKFMNSKGIKKMPGASV 541
           R  M  K +KK PG SV
Sbjct: 467 RGMMREKNVKKTPGQSV 483


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 180/541 (33%), Positives = 293/541 (54%), Gaps = 36/541 (6%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +K  K++HA ++ ++      +  + L+  Y  CG++   + +FD +  KN++ +  +I 
Sbjct: 259 LKGGKQIHAYVLRSETKMDVSTYNV-LIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIA 317

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            Y+ N   ++A+ +   M   G+ PD Y    VL +C   ++L  G QIH  V+KV L++
Sbjct: 318 GYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEH 377

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           + F  N L+ MY KC  L +A+RV + +    VV +N+M+ GY++ G    AL+V +EM 
Sbjct: 378 DNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMR 437

Query: 224 SLRIKPDADTMASL--------------------------LPSVTNTSPENVLS------ 251
              + P   T  SL                          L   T+++  +V S      
Sbjct: 438 LKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIR 497

Query: 252 -VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
             + +F    NK++V WN + + Y       EA  LY  +++    PN  + A++  A  
Sbjct: 498 DARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAAS 557

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
            L++L  G++ H  V +  L+ +  + NALVDMYAKCGS+ EA  +F     +D   W S
Sbjct: 558 ILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNS 617

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           MIS Y   G+  +A+ +F  M+ + + P+ + FVSVLSACSH G +E+G  ++  M  +Y
Sbjct: 618 MISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNSMA-RY 676

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
            + P IEH+A +V LLGRAG++ EA + I++M + P   +W SL++AC ++ N+++   A
Sbjct: 677 GIEPGIEHYASVVTLLGRAGRLTEAREFIEKMTIRPAALVWRSLLSACRVFGNVELAKHA 736

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQI 549
           A+    + P  SG YV+LSNI+A  G WGDVKR+R  M+  G+ K PG S +E+N +V I
Sbjct: 737 AEMAISIDPMDSGSYVMLSNIFASKGMWGDVKRLRLKMDVNGVVKEPGQSWIEVNGEVHI 796

Query: 550 I 550
            
Sbjct: 797 F 797



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 126/437 (28%), Positives = 218/437 (49%), Gaps = 41/437 (9%)

Query: 8   CRHFSTTKP-VQALV--LSTQYTLLSGDACNDILDKYPDIKTL---KKLHAQIIINQHLH 61
           C+ FS+  P VQ ++   S+Q   + G A  ++L      K++   +K+H Q+++   L 
Sbjct: 14  CKFFSSISPNVQPMLPSFSSQNVKVKGRALANLLLAPVSNKSILYYRKVHCQVVL-WGLQ 72

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
            +  +   L+ +Y   G + D   +FD++ N+N+V ++ ++  Y        AL  +   
Sbjct: 73  YDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEF 132

Query: 122 SVHGFDP-DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
                D  + Y    +++AC   +    G Q+H  V+K G   +++ G  LV +Y K G 
Sbjct: 133 QRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGE 192

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           + +AR V + +  K  VTW +++ GY ++GR + +L +   M    + PD   ++S+L +
Sbjct: 193 IDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNA 252

Query: 241 VT----------------------NTSPENVL-----------SVKEMFLKLDNKNLVSW 267
            +                      + S  NVL           + K +F +LD KN++SW
Sbjct: 253 CSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISW 312

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
             MIA Y  NS   EAV+L  +M   G +P+  + +SVL +CG + AL  GR+IH YV +
Sbjct: 313 TTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIK 372

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
             L+ +  + NAL+DMY+KC +L +A+ VFD + C  VV + +MI  Y   G    A+ +
Sbjct: 373 VCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEV 432

Query: 388 FSKMLMSGLCPDSIAFV 404
           F +M +  + P  + FV
Sbjct: 433 FQEMRLKHVSPSFLTFV 449



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 209/456 (45%), Gaps = 37/456 (8%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           +I      +  +G  L+  Y   G++   R VFD +  K  V +  +I  Y  +     +
Sbjct: 168 VIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVS 227

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
           L ++  M      PD Y    +L ACS    L  G QIH  V++     ++   N L+  
Sbjct: 228 LQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDF 287

Query: 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
           Y KCG +K  + + + +  K++++W +M+AGY QN    EA+++  EM  +  KPD    
Sbjct: 288 YTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYAC 347

Query: 235 ASLLPS---------------------------VTNT-----SPENVL-SVKEMFLKLDN 261
           +S+L S                           VTN      S  N L   K +F  +  
Sbjct: 348 SSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTC 407

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
            ++V +N MI  Y+       A++++ +M +  + P+ ++  S+L     L  L L ++I
Sbjct: 408 HSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQI 467

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
           H  + +     +    +AL+D+Y+KC  + +AR VF+    +D+V W S+ S Y +  + 
Sbjct: 468 HGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKS 527

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-RYYFKIMTEQYKLVPRIEHFA 440
            +A  L+S + +S   P+   F ++ +A S    L  G +++ ++M    +  P I +  
Sbjct: 528 EEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFITN-- 585

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
            LVD+  + G VEEA + I    +  +   W S+++
Sbjct: 586 ALVDMYAKCGSVEEA-EKIFSSSVWKDTACWNSMIS 620



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 171/358 (47%), Gaps = 43/358 (12%)

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
           +L A   + S+L   ++HC VV  GL Y++F  N L+  Y K G + +A  + + MP+++
Sbjct: 46  LLLAPVSNKSILYYRKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRN 105

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRI-KPDADTMASLLPS-------------- 240
           +V+W+S+V+ Y Q G  ++AL    E +   + K +   +AS++ +              
Sbjct: 106 LVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVH 165

Query: 241 ---VTNTSPENVL----------------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
              + +   E+V                   + +F  L  K  V+W  +I  Y  +    
Sbjct: 166 SYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSE 225

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
            ++ L+  M    + P+   ++S+L AC  L  L  G++IH YV R + + ++   N L+
Sbjct: 226 VSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLI 285

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           D Y KCG +   + +FD++  ++++SWT+MI+ Y  +   ++AV L  +M   G  PD  
Sbjct: 286 DFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEY 345

Query: 402 AFVSVLSACSHAGLLEEGR----YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           A  SVL++C     L+ GR    Y  K+  E    V        L+D+  +   +++A
Sbjct: 346 ACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTN-----ALIDMYSKCNALDDA 398



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 125/232 (53%), Gaps = 5/232 (2%)

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP-NAISVASVL 306
           +V     +F K+ N+NLVSW+ ++++Y       +A+  +L+ +   ++  N   +AS++
Sbjct: 90  SVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYILASII 149

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
            AC        G ++H YV +     ++ +  +LV +YAK G + +AR VFD +  +  V
Sbjct: 150 RACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPV 209

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR-YYFKI 425
           +WT++I+ Y  SG+   ++ LF+ M+ S + PD     S+L+ACS  G L+ G+  +  +
Sbjct: 210 TWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYV 269

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           +  + K+   +  +  L+D   + G+V+    L  ++ ++ N   W +++A 
Sbjct: 270 LRSETKM--DVSTYNVLIDFYTKCGRVKAGKALFDRLDVK-NIISWTTMIAG 318



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 5/113 (4%)

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           ++A++L A     ++L  RK+H  V    LQ ++ L N L+  Y K GS+ +A T+FD+M
Sbjct: 42  ALANLLLAPVSNKSILYYRKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKM 101

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI---AFVSVLSAC 410
             +++VSW+S++S Y  +  GY+  AL   +     C D +      S++ AC
Sbjct: 102 PNRNLVSWSSVVSMY--TQLGYNEKALLYFLEFQRTCVDKLNEYILASIIRAC 152


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 166/518 (32%), Positives = 281/518 (54%), Gaps = 31/518 (5%)

Query: 54  IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
           +++   L     +   L+  Y  CG +   R +FD+   K+VV +N +I  Y  N L  +
Sbjct: 219 VVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLE 278

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           AL ++ +M ++       ++  V+K C+    L    Q+HCSVVK G  ++      L+ 
Sbjct: 279 ALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMV 338

Query: 174 MYGKCGCLKEARRVLNDMPS-KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
            Y KC  + +A R+  ++    +VV+W +M++G+ QN   +EA+D+  EM+   ++P+  
Sbjct: 339 AYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEF 398

Query: 233 TMASLLPSVTNTSPENVLS-----------------------------VKEMFLKLDNKN 263
           T + +L ++   SP  V +                               ++F  +D+K+
Sbjct: 399 TYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKD 458

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL-LGRKIH 322
           +V+W+ M+A YA       A+ ++ ++   GI+PN  + +S+L  C   +A +  G++ H
Sbjct: 459 IVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFH 518

Query: 323 RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY 382
            +  + +L  +L + +AL+ MYAK G++  A  VF + R +D+VSW SMIS Y   GQ  
Sbjct: 519 GFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAM 578

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL 442
            A+ +F +M    +  D + F+ V +AC+HAGL+EEG  YF IM    K+ P  EH +C+
Sbjct: 579 KALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCM 638

Query: 443 VDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS 502
           VDL  RAG++E+A  +I+ MP      IW +++AAC ++   ++G LAA+ I  + P  S
Sbjct: 639 VDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDS 698

Query: 503 GYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
             YVLLSN+YA++G W +  +VRK MN + +KK PG S
Sbjct: 699 AAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYS 736



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 129/469 (27%), Positives = 220/469 (46%), Gaps = 50/469 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LH Q I    L  + S+G  L+ TY       D R VFDE+  +NVV +  LI  Y  
Sbjct: 113 RQLHCQCIKFGFL-DDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYAR 171

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N +  + L ++  M   G  P+ +T+   L   +       GLQ+H  VVK GLD  +  
Sbjct: 172 NSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 231

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ +Y KCG +++AR + +    K VVTWNSM++GYA NG   EAL +   M    +
Sbjct: 232 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV 291

Query: 228 KPDADTMASLLPSVTN------TSPENVLSVKEMFLKLDN-------------------- 261
           +    + AS++    N      T   +   VK  FL   N                    
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351

Query: 262 --------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
                    N+VSW  MI+ +  N    EAVDL+ +M+  G+ PN  + + +L A   +S
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVIS 411

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
                 ++H  V +   + +  +  AL+D Y K G + EA  VF  +  +D+V+W++M++
Sbjct: 412 P----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLA 467

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL-LEEGRYYFKIMTEQYKL 432
            Y  +G+   A+ +F ++   G+ P+   F S+L+ C+     + +G+ +       + +
Sbjct: 468 GYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQF-----HGFAI 522

Query: 433 VPRIEHFAC----LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             R++   C    L+ +  + G +E A ++ K+   E +   W S+++ 
Sbjct: 523 KSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQ-REKDLVSWNSMISG 570



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/488 (23%), Positives = 224/488 (45%), Gaps = 42/488 (8%)

Query: 76  ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC 135
           +  ++ +  ++FD+   ++   +  L+  +  +    +A  ++ N+   G + DC  +  
Sbjct: 39  SSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSS 98

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
           VLK  +     L G Q+HC  +K G   ++  G  LV  Y K    K+ R+V ++M  ++
Sbjct: 99  VLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERN 158

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP---------------- 239
           VVTW ++++GYA+N   DE L +   M++   +P++ T A+ L                 
Sbjct: 159 VVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHT 218

Query: 240 -----SVTNTSP------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                 +  T P             NV   + +F K + K++V+WN MI+ YA N +  E
Sbjct: 219 VVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLE 278

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A+ ++  M ++ +  +  S ASV+  C +L  L    ++H  V +     +  +  AL+ 
Sbjct: 279 ALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMV 338

Query: 343 MYAKCGSLTEARTVFDQMRC-QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
            Y+KC ++ +A  +F ++ C  +VVSWT+MIS +  +    +AV LFS+M   G+ P+  
Sbjct: 339 AYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEF 398

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
            +  +L+A     ++     + +++   Y+    +     L+D   + GKVEEA  +   
Sbjct: 399 TYSVILTALP---VISPSEVHAQVVKTNYERSSTVG--TALLDAYVKLGKVEEAAKVFSG 453

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH--LAPNQSGYYVLLSNIYAKAGRWG 519
           +  + +   W +++A        +  I     +    + PN+  +  +L+   A     G
Sbjct: 454 ID-DKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMG 512

Query: 520 DVKRVRKF 527
             K+   F
Sbjct: 513 QGKQFHGF 520



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 109/196 (55%), Gaps = 2/196 (1%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           ++HAQ++   +  S+ ++G  L+  Y   G++ +   VF  I +K++V ++ ++  Y   
Sbjct: 414 EVHAQVVKTNYERSS-TVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQT 472

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN-SLLVGLQIHCSVVKVGLDYNLFN 167
                A+ ++  ++  G  P+ +T+  +L  C+ +N S+  G Q H   +K  LD +L  
Sbjct: 473 GETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCV 532

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            + L+ MY K G ++ A  V      KD+V+WNSM++GYAQ+G+  +ALDV +EM+  ++
Sbjct: 533 SSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKV 592

Query: 228 KPDADTMASLLPSVTN 243
           K D  T   +  + T+
Sbjct: 593 KMDGVTFIGVFAACTH 608


>gi|280967731|gb|ACZ98537.1| PPR motif protein [Malus x domestica]
          Length = 751

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 167/491 (34%), Positives = 287/491 (58%), Gaps = 7/491 (1%)

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
           ++G  L+  Y   G + D   VF  +  K+VV +N+LI  YV       AL++   M + 
Sbjct: 236 NLGSSLINFYSKVGLIEDAESVFSRMLEKDVVTWNLLISGYVQIGEVDKALNMCHLMRLE 295

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
               D  T   ++ A +   +L +G + HC  ++  L+ ++   + +V MY KC  +  A
Sbjct: 296 NLRFDSVTLATLMSAFADMRNLKLGKEGHCYCIRNNLESDVVVVSSIVDMYAKCEKIGCA 355

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           RRV N   +KD++ WN+M+A +A+ G   EAL++  +M+   + P+  +  SL+    N+
Sbjct: 356 RRVFNSSITKDLILWNTMLAAFAELGHSGEALNLFYQMQLESVPPNVISWNSLILGFLNS 415

Query: 245 SPENVLSVKEMFLKLDN----KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
              N    K+MFL++ +     NLV+W  +I+  A +    EA+  + +M+  G++PN +
Sbjct: 416 GQVN--EAKDMFLQMQSLGVQPNLVTWTTLISGLARSGFGYEAILTFQRMQEAGVKPNVV 473

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           S+  VL AC +L++L +GR +H Y+ R  L  ++ +  +LVDMYAKCG   +A+ VFD +
Sbjct: 474 SIIGVLLACINLASLQIGRALHGYLIRHSLYLSIPIATSLVDMYAKCGDRDQAKRVFDMI 533

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             +++  + +MIS + + GQ  +A+AL+  +   GL PD+I F + L ACSHA ++ EG 
Sbjct: 534 PDKELPIYNAMISGFALHGQAVEALALYRCLKEEGLKPDNITFTNALYACSHAMMVSEGL 593

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
             F  M   + + P IEH+ C+V LL R G ++EA+ LI  MP +P+ +I GSL+AAC  
Sbjct: 594 ELFVDMVSNHNINPSIEHYGCMVSLLSRCGDLDEAFGLISAMPYKPDVQILGSLLAACRE 653

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           ++ +++    ++ +  L P+ SG YV +SN YA AGRW +VK+VR+ M  +G++K+PG S
Sbjct: 654 HNKIELEEYLSNQLLKLQPDNSGNYVAMSNAYAAAGRWDEVKKVRQLMKERGLRKIPGCS 713

Query: 541 -VEMNDQVQII 550
            +++ +++ + 
Sbjct: 714 WIQVGEELNVF 724



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 129/519 (24%), Positives = 245/519 (47%), Gaps = 53/519 (10%)

Query: 44  IKTLKKLHAQIIINQHLHS-NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           + T +++HAQI+    + + N  I  KL+  Y  C     +  +F  +  KNV  +  +I
Sbjct: 26  LHTGRQIHAQIVKKGAIFAMNEYIETKLVIFYAKCDNPEASNSLFRRVRLKNVFSWAAVI 85

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
                   Y +AL  +K M  +G  PD +  P VLKAC G   + +G  +H  +V  G  
Sbjct: 86  GLNCRKGFYQEALLGFKEMQENGLLPDNFVLPNVLKACGGLEWIRIGKVVH-GLVSCGYV 144

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
           + ++                  ++ +  MP ++ V WNSM+ GY QNG  +EA++V  EM
Sbjct: 145 WKMWG-------------GGGCKKGVCGMPQRNAVAWNSMIVGYVQNGLNEEAIEVFYEM 191

Query: 223 ESLRIKPDADTMASLLPSVTN--------------------------TSPENVLS----- 251
               ++P   T++S L +  N                          +S  N  S     
Sbjct: 192 REEGVEPTQVTLSSFLSASANLGALQDGKQGHAIAVICGIEMTTNLGSSLINFYSKVGLI 251

Query: 252 --VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
              + +F ++  K++V+WN++I+ Y       +A+++   M +  +  +++++A+++ A 
Sbjct: 252 EDAESVFSRMLEKDVVTWNLLISGYVQIGEVDKALNMCHLMRLENLRFDSVTLATLMSAF 311

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
            D+  L LG++ H Y  R  L+ ++ + +++VDMYAKC  +  AR VF+    +D++ W 
Sbjct: 312 ADMRNLKLGKEGHCYCIRNNLESDVVVVSSIVDMYAKCEKIGCARRVFNSSITKDLILWN 371

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           +M++A+   G   +A+ LF +M +  + P+ I++ S++    ++G + E +  F +  + 
Sbjct: 372 TMLAAFAELGHSGEALNLFYQMQLESVPPNVISWNSLILGFLNSGQVNEAKDMF-LQMQS 430

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEA---YDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
             + P +  +  L+  L R+G   EA   +  +++  ++PN      ++ AC   +++ I
Sbjct: 431 LGVQPNLVTWTTLISGLARSGFGYEAILTFQRMQEAGVKPNVVSIIGVLLACINLASLQI 490

Query: 487 G-ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV 524
           G  L    I H           L ++YAK G     KRV
Sbjct: 491 GRALHGYLIRHSLYLSIPIATSLVDMYAKCGDRDQAKRV 529



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 197/448 (43%), Gaps = 82/448 (18%)

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           +N V +N +I  YV N L  +A+ V+  M   G +P   T    L A +   +L  G Q 
Sbjct: 163 RNAVAWNSMIVGYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSASANLGALQDGKQG 222

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H   V  G++     G+ L+  Y K G +++A  V + M  KDVVTWN +++GY Q G  
Sbjct: 223 HAIAVICGIEMTTNLGSSLINFYSKVGLIEDAESVFSRMLEKDVVTWNLLISGYVQIGEV 282

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTN----------------------------- 243
           D+AL++C  M    ++ D+ T+A+L+ +  +                             
Sbjct: 283 DKALNMCHLMRLENLRFDSVTLATLMSAFADMRNLKLGKEGHCYCIRNNLESDVVVVSSI 342

Query: 244 ----TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                  E +   + +F     K+L+ WN M+A +A      EA++L+ QM++  + PN 
Sbjct: 343 VDMYAKCEKIGCARRVFNSSITKDLILWNTMLAAFAELGHSGEALNLFYQMQLESVPPNV 402

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           IS                                    N+L+  +   G + EA+ +F Q
Sbjct: 403 ISW-----------------------------------NSLILGFLNSGQVNEAKDMFLQ 427

Query: 360 MRCQDV----VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           M+   V    V+WT++IS    SG GY+A+  F +M  +G+ P+ ++ + VL AC +   
Sbjct: 428 MQSLGVQPNLVTWTTLISGLARSGFGYEAILTFQRMQEAGVKPNVVSIIGVLLACINLAS 487

Query: 416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA---YDLI--KQMP----MEP 466
           L+ GR     +  ++ L   I     LVD+  + G  ++A   +D+I  K++P    M  
Sbjct: 488 LQIGRALHGYLI-RHSLYLSIPIATSLVDMYAKCGDRDQAKRVFDMIPDKELPIYNAMIS 546

Query: 467 NERIWGSLVAACCLYSNMDIGILAADHI 494
              + G  V A  LY  +    L  D+I
Sbjct: 547 GFALHGQAVEALALYRCLKEEGLKPDNI 574



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 146/310 (47%), Gaps = 21/310 (6%)

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY--NLFNGNGLVAMYGKCGCLKEARRVLN 189
            Y  +L+ C    +L  G QIH  +VK G  +  N +    LV  Y KC   + +  +  
Sbjct: 12  VYGELLQGCVYERALHTGRQIHAQIVKKGAIFAMNEYIETKLVIFYAKCDNPEASNSLFR 71

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            +  K+V +W +++    + G + EAL   +EM+   + PD   + ++L +        +
Sbjct: 72  RVRLKNVFSWAAVIGLNCRKGFYQEALLGFKEMQENGLLPDNFVLPNVLKACGGLEWIRI 131

Query: 250 LSVKEMFLK-------------------LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
             V    +                    +  +N V+WN MI  Y  N +  EA++++ +M
Sbjct: 132 GKVVHGLVSCGYVWKMWGGGGCKKGVCGMPQRNAVAWNSMIVGYVQNGLNEEAIEVFYEM 191

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
              G+EP  ++++S L A  +L AL  G++ H       ++    L ++L++ Y+K G +
Sbjct: 192 REEGVEPTQVTLSSFLSASANLGALQDGKQGHAIAVICGIEMTTNLGSSLINFYSKVGLI 251

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
            +A +VF +M  +DVV+W  +IS Y   G+   A+ +   M +  L  DS+   +++SA 
Sbjct: 252 EDAESVFSRMLEKDVVTWNLLISGYVQIGEVDKALNMCHLMRLENLRFDSVTLATLMSAF 311

Query: 411 SHAGLLEEGR 420
           +    L+ G+
Sbjct: 312 ADMRNLKLGK 321



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 92/185 (49%), Gaps = 5/185 (2%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           + LH   +I   L+ +  I   L+  Y  CG     + VFD I +K +  +N +I  +  
Sbjct: 492 RALHG-YLIRHSLYLSIPIATSLVDMYAKCGDRDQAKRVFDMIPDKELPIYNAMISGFAL 550

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV-GLDYNLF 166
           +    +AL +Y+ +   G  PD  T+   L ACS +  +  GL++   +V    ++ ++ 
Sbjct: 551 HGQAVEALALYRCLKEEGLKPDNITFTNALYACSHAMMVSEGLELFVDMVSNHNINPSIE 610

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           +   +V++  +CG L EA  +++ MP K DV    S++A   ++ + +  L+     + L
Sbjct: 611 HYGCMVSLLSRCGDLDEAFGLISAMPYKPDVQILGSLLAACREHNKIE--LEEYLSNQLL 668

Query: 226 RIKPD 230
           +++PD
Sbjct: 669 KLQPD 673



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 2/124 (1%)

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK--LQPNLRLENALVDMYAKC 347
           ME+  +         +L  C    AL  GR+IH  + +K      N  +E  LV  YAKC
Sbjct: 1   MELKNLRIGPEVYGELLQGCVYERALHTGRQIHAQIVKKGAIFAMNEYIETKLVIFYAKC 60

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
            +   + ++F ++R ++V SW ++I      G   +A+  F +M  +GL PD+    +VL
Sbjct: 61  DNPEASNSLFRRVRLKNVFSWAAVIGLNCRKGFYQEALLGFKEMQENGLLPDNFVLPNVL 120

Query: 408 SACS 411
            AC 
Sbjct: 121 KACG 124


>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
          Length = 655

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 173/481 (35%), Positives = 267/481 (55%), Gaps = 38/481 (7%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L   Y ACG + DTR VFD +  ++VV + V++ SY     Y +AL ++  M   G
Sbjct: 187 VGTALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSG 246

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             PD      VL AC     L +G  IH  ++   +       + L+++Y  C  ++ A 
Sbjct: 247 VVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCANMEMAE 306

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           ++ N+MP KD+V+  +MV+GYA+N          R++E  R             S+ +  
Sbjct: 307 KLYNEMPRKDLVSSTAMVSGYARN----------RKVEIAR-------------SIFDGM 343

Query: 246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
           PE              K++VSW+ MI+ Y +++ P EA+ L+  M+  GI  + I++ SV
Sbjct: 344 PE--------------KDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSV 389

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           + AC +L +L   + IH +++   L   L + NAL+DM+AKCG +  A  VF++M  ++V
Sbjct: 390 ISACANLGSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEMPLKNV 449

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           ++WTSMISA+ M G G  ++ LF +M   G  P+ + F+S+L AC HAGL+ EGR  F  
Sbjct: 450 ITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGLVHEGRLLFSS 509

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M +QY + P+ EH+ C+VDLLGRA  ++EA  LI+ M +EPN  IWGSL+AAC ++ ++ 
Sbjct: 510 MVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVSLIESMHLEPNVPIWGSLLAACWMHGDLK 569

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMN 544
           +G  AA  I  L PN  G  VLL  IY K+    + + VR  M    + K  G S +E+N
Sbjct: 570 LGAFAAKKILQLDPNHDGASVLLLKIYMKSDNLNNAQEVRGVMKLHRVSKETGLSWMELN 629

Query: 545 D 545
           +
Sbjct: 630 E 630


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 172/532 (32%), Positives = 287/532 (53%), Gaps = 68/532 (12%)

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
            +F+ I + ++  +N++I+++V +  +  A+ +++ +  HG  PD YTYP VLK      
Sbjct: 63  RIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIG 122

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
            +  G ++H  VVK GL+++ +  N  + MY + G ++   +V  +MP +D V+WN M++
Sbjct: 123 EVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMIS 182

Query: 205 GYAQNGRFDEALDVCREMES-LRIKPDADTMASLLPSVT--------------------- 242
           GY +  RF+EA+DV R M +    KP+  T+ S L +                       
Sbjct: 183 GYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDL 242

Query: 243 NTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVY--------ANNSMP--- 280
            T   N L             +E+F  +  KN+  W  M+  Y        A N      
Sbjct: 243 TTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSP 302

Query: 281 --------------------AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
                                E + L+ +M++ G++P+   V ++L  C    AL  G+ 
Sbjct: 303 SRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKW 362

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
           IH Y++  +++ +  +  AL++MYAKCG + ++  +F+ ++ +D  SWTS+I    M+G+
Sbjct: 363 IHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGK 422

Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA 440
             +A+ LF  M   GL PD I FV+VLSACSHAGL+EEGR  F  M+  Y + P +EH+ 
Sbjct: 423 PSEALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYG 482

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERI---WGSLVAACCLYSNMDIGILAADHIFHL 497
           C +DLLGRAG ++EA +L+K++P + NE I   +G+L++AC  Y N+D+G   A  +  +
Sbjct: 483 CFIDLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKV 542

Query: 498 APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
             + S  + LL++IYA A RW DV++VR  M   GIKK+PG +++E++ + Q
Sbjct: 543 KSSDSSLHTLLASIYASADRWEDVRKVRNKMKDLGIKKVPGYSAIEVDGKWQ 594



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 186/409 (45%), Gaps = 69/409 (16%)

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
           TY  +LK+C  S S L  +Q H   V +  D +  N     +M    G    A R+ N +
Sbjct: 10  TYISLLKSCK-SMSQLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYI 68

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL------------- 238
               +  +N M+  + ++G F  A+ + +++    + PD  T   +L             
Sbjct: 69  HDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGE 128

Query: 239 --------------PSVTNTSPEN------VLSVKEMFLKLDNKNLVSWNVMIAVYANNS 278
                         P V N+  +       V    ++F ++ +++ VSWN+MI+ Y    
Sbjct: 129 KVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCK 188

Query: 279 MPAEAVDLYLQMEVHGIE-PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
              EAVD+Y +M     E PN  +V S L AC  L  L LG++IH Y+   +L     + 
Sbjct: 189 RFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIA-SELDLTTIMG 247

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ----------------- 380
           NAL+DMY KCG ++ AR +FD M  ++V  WTSM++ Y + GQ                 
Sbjct: 248 NALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIV 307

Query: 381 -------GY-------DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
                  GY       + +ALF +M + G+ PD    V++L+ C+ +G LE+G++    +
Sbjct: 308 LWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYI 367

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
            E    V  +   A L+++  + G +E+++++   +  E +   W S++
Sbjct: 368 DENRIKVDAVVGTA-LIEMYAKCGCIEKSFEIFNGLK-EKDTTSWTSII 414



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 147/315 (46%), Gaps = 8/315 (2%)

Query: 52  AQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLY 111
           A+ I +     N +    ++  Y  CGQ+   R++F+   ++++V +  +I  YV    +
Sbjct: 263 AREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRF 322

Query: 112 YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGL 171
            + + ++  M + G  PD +    +L  C+ S +L  G  IH  + +  +  +   G  L
Sbjct: 323 EETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGTAL 382

Query: 172 VAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA 231
           + MY KCGC++++  + N +  KD  +W S++ G A NG+  EAL++ + M++  +KPD 
Sbjct: 383 IEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDD 442

Query: 232 DTMASLLPSVTNTSPENVLSVKEMFLKLDN-----KNLVSWNVMIAVYANNSMPAEAVDL 286
            T  ++L + ++     V   +++F  + +      NL  +   I +     +  EA +L
Sbjct: 443 ITFVAVLSACSHAGL--VEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEEL 500

Query: 287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
             ++     E       ++L AC     + +G ++   + + K   +  L   L  +YA 
Sbjct: 501 VKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVK-SSDSSLHTLLASIYAS 559

Query: 347 CGSLTEARTVFDQMR 361
                + R V ++M+
Sbjct: 560 ADRWEDVRKVRNKMK 574



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 155/337 (45%), Gaps = 19/337 (5%)

Query: 210 GRFDEALDVCREMESLR----------IKPDADTMASLLPSVTNTSPENVLSVKEMFLKL 259
           G +   L  C+ M  L+          ++ D DT+  L+    ++S  +      +F  +
Sbjct: 9   GTYISLLKSCKSMSQLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYI 68

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
            + +L  +N+MI  +  +     A+ L+ Q+  HG+ P+  +   VL   G +  +  G 
Sbjct: 69  HDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGE 128

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
           K+H +V +  L+ +  + N+ +DMYA+ G +     VF++M  +D VSW  MIS Y    
Sbjct: 129 KVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCK 188

Query: 380 QGYDAVALFSKMLM-SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           +  +AV ++ +M   S   P+    VS LSAC+    LE G+     +  +  L   + +
Sbjct: 189 RFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLTTIMGN 248

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
              L+D+  + G V  A ++   M ++ N   W S+V    +   +D     A ++F  +
Sbjct: 249 --ALLDMYCKCGHVSVAREIFDAMTVK-NVNCWTSMVTGYVICGQLD----QARNLFERS 301

Query: 499 PNQS-GYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534
           P++    +  + N Y +  R+ +   +   M  +G+K
Sbjct: 302 PSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVK 338


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 166/525 (31%), Positives = 295/525 (56%), Gaps = 9/525 (1%)

Query: 34  CNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
           CN ++  Y   K  K   A+ + +   + N S    ++ +Y A G + D   +F E+ + 
Sbjct: 272 CNPLISMYS--KNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESS 329

Query: 94  N----VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG 149
           +    +V +N L+  +  +    + L++ + M   GF P+  +   VL+A S    L +G
Sbjct: 330 DMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMG 389

Query: 150 LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQN 209
            + H  V++ G D +++ G  L+ MY K   L  A+ V ++M ++++  WNS+V+GY+  
Sbjct: 390 KETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFK 449

Query: 210 GRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS-PENVLSVKEMFLKLD-NKNLVSW 267
           G F++AL +  +ME   IKPD  T   ++         +  L+V      L    N+VSW
Sbjct: 450 GMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSW 509

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
             +I+  +      +++  + QM+  G+ PN+ S+  +L AC  LS L  G++IH    R
Sbjct: 510 TALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIR 569

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
                ++ +  AL+DMY+K  SL  A  VF +++ + + SW  MI  + + G G +A+++
Sbjct: 570 NGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISV 629

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           F++M   G+ PD+I F ++LSAC ++GL+ EG  YF  M   Y++VPR+EH+ C+VDLLG
Sbjct: 630 FNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLG 689

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507
           RAG ++EA+DLI  MP++P+  IWG+L+ +C ++ N+     AA ++F L PN S  Y+L
Sbjct: 690 RAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYIL 749

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIK-KMPGASVEMNDQVQIIA 551
           + N+Y+   RW D+  +R+ M + G++ +   + +++N +V + +
Sbjct: 750 MMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFS 794



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 197/421 (46%), Gaps = 37/421 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           LM  YG C  +     VF E+ N   + +N  I   + +      + +++ M       +
Sbjct: 174 LMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAE 233

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   VL+AC    +L    QIH  V + GLD ++   N L++MY K G L+ ARRV +
Sbjct: 234 TATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFD 293

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            M +++  +WNSM++ YA  G  ++A  +  E+ES  +KPD                   
Sbjct: 294 SMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPD------------------- 334

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                         +V+WN +++ +  +    E +++  +M+  G +PN+ S+ SVL A 
Sbjct: 335 --------------IVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAI 380

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
            +L  L +G++ H YV R     ++ +  +L+DMY K  SLT A+ VFD M+ +++ +W 
Sbjct: 381 SELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWN 440

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           S++S Y   G   DA+ L ++M   G+ PD + +  ++S  +  G  +E        T+ 
Sbjct: 441 SLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLH-QTKS 499

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME---PNERIWGSLVAACCLYSNMDI 486
             L P +  +  L+    +AG   ++     QM  E   PN      L+ AC   S +  
Sbjct: 500 LGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQK 559

Query: 487 G 487
           G
Sbjct: 560 G 560


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 171/514 (33%), Positives = 281/514 (54%), Gaps = 38/514 (7%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           ++ S+G  L+  +   G +V  R VFD +  + VV + +LI  Y  +    +A+ ++ +M
Sbjct: 187 TDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDM 246

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC--- 178
             +GF PD YT   +L AC+   S  +G Q+H   +++GL+ +     GLV MY K    
Sbjct: 247 LENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNG 306

Query: 179 GCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV--CREMESLRIKPDADTMAS 236
             L  AR V N MP  +V+ W ++++GY Q G  D  + +  C+ M +  I+P+  T +S
Sbjct: 307 QSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCK-MLNEGIRPNHITYSS 365

Query: 237 LLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNV----MIAVYANNSMPAEAVDLY----- 287
           +L +  N   ++  S +++       NL   NV    ++++YA +    EA   +     
Sbjct: 366 MLKACANLGDQD--SGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYE 423

Query: 288 ---------------------LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
                                 Q+E   +  +  +  S++ A   +  L  G+++H    
Sbjct: 424 KNMVSFSGNLDGDGRSNTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSL 483

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           +     +  + N+LV MY++CG L +A  VFD+M   +V+SWTSMIS     G    A+ 
Sbjct: 484 KAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALE 543

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           LF  M+ +G+ P+ + +++VLSACSHAGL++EG+ +F++M + + L+PR+EH+AC+VDLL
Sbjct: 544 LFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLL 603

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
           GR+G VE+A D I +MP + +  +W +L+ AC  ++NMDIG +AA+H+  L P     YV
Sbjct: 604 GRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYV 663

Query: 507 LLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           LLSN+YA+AG W  V R+R  M  K + K  G S
Sbjct: 664 LLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLS 697



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 171/356 (48%), Gaps = 46/356 (12%)

Query: 150 LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS--KDVVTWNSMVAGYA 207
           LQ H       L+ +    N L+ +Y KC  +  AR V + MP   +D+V+W +M +  +
Sbjct: 69  LQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLS 128

Query: 208 QNGRFDEALDVCREMESLRIKPDADTMASLLPSV------------------------TN 243
           +NG   EAL +  E     + P+A T+ +   +                         T+
Sbjct: 129 RNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTD 188

Query: 244 TS-----------PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
            S             ++++++ +F  L  + +V W ++I  YA +    EAV+L+L M  
Sbjct: 189 VSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLE 248

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC---GS 349
           +G +P+  +++S+L AC +L +  LG+++H    R  L+ +  +   LVDMYAK     S
Sbjct: 249 NGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQS 308

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSG-QGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
           L  AR VF++M   +V++WT+++S Y   G Q    + LF KML  G+ P+ I + S+L 
Sbjct: 309 LHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLK 368

Query: 409 ACSHAGLLEEGRYYFKIMTEQYK--LVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           AC++ G  + GR   +I T   K  L         LV +   +G +EEA     Q+
Sbjct: 369 ACANLGDQDSGR---QIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQL 421



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 23/264 (8%)

Query: 227 IKPDADTMASLLPSVTNTSPENVLSVKEMF--LKLDNKNLVSWNVMIAVYANNSMPAEAV 284
           ++ DA    SLL   +  S   V + + +F  + +  ++LVSW  M +  + N   AEA+
Sbjct: 80  LETDAVVANSLLTLYSKCSA--VAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEAL 137

Query: 285 DLYLQMEVHGIEPNAISVASVLPAC--GDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
            L+ +    G+ PNA ++ +   AC   +L  L  G  +    +      ++ +  AL+D
Sbjct: 138 RLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALID 197

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           M+AK G L   R VFD +  + VV WT +I+ Y  SG   +AV LF  ML +G  PD   
Sbjct: 198 MFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYT 257

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR--IEHFAC----LVDLLGRA---GKVE 453
             S+LSAC+  G        F++  + + L  R  +E  +C    LVD+  ++     + 
Sbjct: 258 LSSMLSACTELG-------SFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLH 310

Query: 454 EAYDLIKQMPMEPNERIWGSLVAA 477
            A ++  +MP + N   W +L++ 
Sbjct: 311 NAREVFNRMP-KHNVMAWTALLSG 333



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 85/169 (50%), Gaps = 5/169 (2%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LHA + +     S+ +IG  L+  Y  CG +VD   VFDE+ + NV+ +  +I     
Sbjct: 476 QRLHA-LSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAK 534

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV--GLDYNL 165
           +     AL ++ +M   G  P+  TY  VL ACS +  +  G + H  +++   GL   +
Sbjct: 535 HGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKE-HFRMMQKHHGLIPRM 593

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFD 213
            +   +V + G+ G +++A   +N+MP + D + W +++     +   D
Sbjct: 594 EHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMD 642



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 4/98 (4%)

Query: 317 LGRKIHRYVERKK--LQPNLRLENALVDMYAKCGSLTEARTVFDQM--RCQDVVSWTSMI 372
           LGR +  ++ R    L+ +  + N+L+ +Y+KC ++  AR+VFD M    +D+VSWT+M 
Sbjct: 65  LGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMA 124

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
           S    +G   +A+ LF + L  GL P++    +   AC
Sbjct: 125 SCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQAC 162


>gi|302803540|ref|XP_002983523.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
 gi|300148766|gb|EFJ15424.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
          Length = 506

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 170/493 (34%), Positives = 270/493 (54%), Gaps = 40/493 (8%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG--FDPDCY 131
           +  CG + ++R VFD+   K+V+F+N +I +Y  +    +A+ ++K+M       +P+  
Sbjct: 2   FAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAI 61

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
           TY  VL ACS   +L  G ++H  +V  G  ++    N LV MY KCG + EAR V + M
Sbjct: 62  TYTTVLAACSAVEALEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGM 121

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS------ 245
             + VV+W  +++ Y + G   EALD+ R+M S  ++P+  T AS+L + ++        
Sbjct: 122 KQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGK 181

Query: 246 ------------PE---------------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNS 278
                       P+               +V S +++F ++  +N+VSW  MI+ YA++ 
Sbjct: 182 AVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISSYAHHR 241

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK--LQPNLRL 336
              EA+ LY  M+V    PNA+++ASVL AC  L     GR +H  +      L  +  L
Sbjct: 242 HSEEAIQLYKAMDV---APNAVTLASVLSACASLGNAEEGRAVHEKLASTTTGLATDEVL 298

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
           +NAL++MYAKCG    AR +FD M  +D +SW+++I+AY   G+G +AV +   M + G+
Sbjct: 299 QNALLNMYAKCGDGDAARKIFDAMAVRDTMSWSTLIAAYTQHGRGGEAVEMCRSMELEGV 358

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
              S  + +VL+ACS AGLLE  R+YF  +T       ++E + C+  +LGRAG++ EA 
Sbjct: 359 QASSFIYGTVLTACSQAGLLESARHYFGCLTRDCGAPAKLEDYVCMATVLGRAGRLAEAE 418

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           +L+  MP E     W  L+AAC  +++++ G   A+ +F L P     YVLLSNIY  AG
Sbjct: 419 ELLAVMPFEAEFVAWMGLLAACKAHNDVERGARVAEVLFRLEPLNEAPYVLLSNIYVAAG 478

Query: 517 RWGDVKRVRKFMN 529
           R  +  RVR+ M 
Sbjct: 479 RQEEAARVRRKMG 491



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/432 (29%), Positives = 207/432 (47%), Gaps = 85/432 (19%)

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR--IKPDA 231
           M+ KCG LKE+R V +D   KDV+ WNSM+  Y+Q+G   EA+++ + M S    ++P+A
Sbjct: 1   MFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNA 60

Query: 232 DTMASLLPSVT----------------------NTSPENVL-----------SVKEMFLK 258
            T  ++L + +                      + + EN L             +E+F  
Sbjct: 61  ITYTTVLAACSAVEALEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDG 120

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +  + +VSW  +I+ Y     P EA+DLY +M   G+EPN I+ ASVL AC  L AL  G
Sbjct: 121 MKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEG 180

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           + +H  ++    +P+L + NALV +Y KCGS+  AR VFD+M+ ++VVSWT+MIS+Y   
Sbjct: 181 KAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISSYAHH 240

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE- 437
               +A+ L+  M    + P+++   SVLSAC+  G  EEGR   + +      +   E 
Sbjct: 241 RHSEEAIQLYKAM---DVAPNAVTLASVLSACASLGNAEEGRAVHEKLASTTTGLATDEV 297

Query: 438 -------------------------------HFACLVDLLGRAGKVEEAYDLIKQMPME- 465
                                           ++ L+    + G+  EA ++ + M +E 
Sbjct: 298 LQNALLNMYAKCGDGDAARKIFDAMAVRDTMSWSTLIAAYTQHGRGGEAVEMCRSMELEG 357

Query: 466 --PNERIWGSLVAACCLYSNMDIGIL-AADHIFHL------APNQSGYYVLLSNIYAKAG 516
              +  I+G+++ AC        G+L +A H F        AP +   YV ++ +  +AG
Sbjct: 358 VQASSFIYGTVLTACS-----QAGLLESARHYFGCLTRDCGAPAKLEDYVCMATVLGRAG 412

Query: 517 RWGDVKRVRKFM 528
           R  + + +   M
Sbjct: 413 RLAEAEELLAVM 424



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 196/411 (47%), Gaps = 50/411 (12%)

Query: 2   KAVVLLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLH 61
           +A+ L     S++ PV+   + T  T+L+  AC+ +      ++  K++H Q++ +    
Sbjct: 41  EAIELFKSMGSSSPPVEPNAI-TYTTVLA--ACSAV----EALEQGKEVHRQMV-DAGFQ 92

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
            + +    L+  Y  CG + + R VFD +  + VV +  +I +YV      +AL +Y+ M
Sbjct: 93  FDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKM 152

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              G +P+  T+  VL ACS   +L  G  +H  +   G   +L   N LV++YGKCG +
Sbjct: 153 GSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSV 212

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL--- 238
             AR+V + M  ++VV+W +M++ YA +   +EA+ + + M+   + P+A T+AS+L   
Sbjct: 213 DSARKVFDRMKIRNVVSWTAMISSYAHHRHSEEAIQLYKAMD---VAPNAVTLASVLSAC 269

Query: 239 -----------------PSVTNTSPENVL---------------SVKEMFLKLDNKNLVS 266
                             + T  + + VL               + +++F  +  ++ +S
Sbjct: 270 ASLGNAEEGRAVHEKLASTTTGLATDEVLQNALLNMYAKCGDGDAARKIFDAMAVRDTMS 329

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           W+ +IA Y  +    EAV++   ME+ G++ ++    +VL AC     L   R     + 
Sbjct: 330 WSTLIAAYTQHGRGGEAVEMCRSMELEGVQASSFIYGTVLTACSQAGLLESARHYFGCLT 389

Query: 327 RKKLQPNLRLEN--ALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
           R    P  +LE+   +  +  + G L EA  +   M  + + V+W  +++A
Sbjct: 390 RDCGAP-AKLEDYVCMATVLGRAGRLAEAEELLAVMPFEAEFVAWMGLLAA 439


>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 175/507 (34%), Positives = 275/507 (54%), Gaps = 35/507 (6%)

Query: 69  KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV-NNYLYYDALHVYKNMSVHGFD 127
           KL+  Y   G +     +FD +  ++VV FN +I + V NNY   D + +Y  M      
Sbjct: 99  KLLSLYLKFGHIHHAHQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVK 158

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           P+  T+  ++ AC G  +L +    H   V+ GL  N F G+ LV  Y K   L++A + 
Sbjct: 159 PNHITFAGLIGACDGLIALRLRGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKA 218

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS------- 240
            N++   D+V+WN M+ G A+N   + A+ +  +M    ++ D  T+ S++ +       
Sbjct: 219 FNEIMELDLVSWNIMIDGCARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDL 278

Query: 241 --------------VTNTSP-------------ENVLSVKEMFLKLDNKNLVSWNVMIAV 273
                         + + +P             + V S  ++F  +   N++SW  MI+ 
Sbjct: 279 KHGMQFHGSAIKLGLAHETPIYNALITMYSKCEKGVASPVKIFGSISEPNIISWTAMISG 338

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           +  N    EA+ L+ +M   G+  N  S +S+LP  G+L+ L  G++IH  + +     +
Sbjct: 339 FMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLEQGKQIHARIIKSWFGLD 398

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
           L + NAL+DMY+KCGSL +A  VF +M   DVVS T+MI +YG  G+G +A+ + ++M  
Sbjct: 399 LSVNNALIDMYSKCGSLEDAHLVFMKMGKHDVVSCTTMIMSYGQHGKGKEALEILAEMKS 458

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
            GL PD + F+  L ACSH GL+EEG   FKIM E + L P+ EHFAC+VD+LGRAG++ 
Sbjct: 459 EGLVPDGVTFLGCLYACSHGGLVEEGVRVFKIMIEDHNLKPKREHFACVVDMLGRAGRLN 518

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           EA + I +M +E +  +W +L+ AC ++  M +G  +A  I  L P + G YVLL+NIYA
Sbjct: 519 EAENFIDEMGIESDVLVWETLLGACRVHGEMVLGEKSAQKIMELQPGRHGPYVLLANIYA 578

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           + G W D   VR+ + S G+KK  G S
Sbjct: 579 ERGSWEDKVMVREKLVSHGLKKQVGCS 605



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 179/370 (48%), Gaps = 42/370 (11%)

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
           + +  +L+ C+ +  L  G+ +H  +VK+ ++  +   N L+++Y K G +  A ++ + 
Sbjct: 60  HQFSQILQECTDAGDLRTGMSVHTYLVKLNINGFILIWNKLLSLYLKFGHIHHAHQLFDT 119

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVC---REMESLRIKPDADTMASLLPSVTN---- 243
           MP +DVV++N+M++   +N    +ALD+     +M+   +KP+  T A L+ +       
Sbjct: 120 MPRRDVVSFNTMISASVRNNY--DALDLVGLYSKMKKEDVKPNHITFAGLIGACDGLIAL 177

Query: 244 ---------------TSPENVLS------VKEM--------FLKLDNKNLVSWNVMIAVY 274
                          +S E V S       K+M        F ++   +LVSWN+MI   
Sbjct: 178 RLRGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIMELDLVSWNIMIDGC 237

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           A N+    AV ++ QM    +  +  ++ S++  C     L  G + H    +  L    
Sbjct: 238 ARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAHET 297

Query: 335 RLENALVDMYAKC-GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
            + NAL+ MY+KC   +     +F  +   +++SWT+MIS +  + Q  +A+ LF +ML 
Sbjct: 298 PIYNALITMYSKCEKGVASPVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLR 357

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
            G+  +  +F S+L    +   LE+G+  + +I+   + L   + +   L+D+  + G +
Sbjct: 358 LGVRENDFSFSSILPVYGNLANLEQGKQIHARIIKSWFGLDLSVNN--ALIDMYSKCGSL 415

Query: 453 EEAYDLIKQM 462
           E+A+ +  +M
Sbjct: 416 EDAHLVFMKM 425



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 156/345 (45%), Gaps = 22/345 (6%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR-HVFDEITNKNVVFF 98
           K  D+K   + H   I     H  P I   L+  Y  C + V +   +F  I+  N++ +
Sbjct: 274 KPGDLKHGMQFHGSAIKLGLAHETP-IYNALITMYSKCEKGVASPVKIFGSISEPNIISW 332

Query: 99  NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
             +I  ++ N    +A+ ++K M   G   + +++  +L       +L  G QIH  ++K
Sbjct: 333 TAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLEQGKQIHARIIK 392

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
                +L   N L+ MY KCG L++A  V   M   DVV+  +M+  Y Q+G+  EAL++
Sbjct: 393 SWFGLDLSVNNALIDMYSKCGSLEDAHLVFMKMGKHDVVSCTTMIMSYGQHGKGKEALEI 452

Query: 219 CREMESLRIKPDADTMASLLPSVTNTS--PENVLSVKEMFLKLDNKNL----VSWNVMIA 272
             EM+S  + PD  T    L + ++     E V   K M   +++ NL      +  ++ 
Sbjct: 453 LAEMKSEGLVPDGVTFLGCLYACSHGGLVEEGVRVFKIM---IEDHNLKPKREHFACVVD 509

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
           +        EA +   +M   GIE + +   ++L AC     ++LG K  + +   +LQP
Sbjct: 510 MLGRAGRLNEAENFIDEM---GIESDVLVWETLLGACRVHGEMVLGEKSAQKI--MELQP 564

Query: 333 NLRLENALV-DMYAKCGS-----LTEARTVFDQMRCQDVVSWTSM 371
                  L+ ++YA+ GS     +   + V   ++ Q   SW ++
Sbjct: 565 GRHGPYVLLANIYAERGSWEDKVMVREKLVSHGLKKQVGCSWVAL 609



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 7/230 (3%)

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
           + +L  C D   L  G  +H Y+ +  +   + + N L+ +Y K G +  A  +FD M  
Sbjct: 63  SQILQECTDAGDLRTGMSVHTYLVKLNINGFILIWNKLLSLYLKFGHIHHAHQLFDTMPR 122

Query: 363 QDVVSWTSMISAYGMSG-QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE-EGR 420
           +DVVS+ +MISA   +     D V L+SKM    + P+ I F  ++ AC   GL+    R
Sbjct: 123 RDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGACD--GLIALRLR 180

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
             F   T +  L       + LVD   +  K+E+A     ++ ME +   W  ++  C  
Sbjct: 181 GIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEI-MELDLVSWNIMIDGCAR 239

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530
            ++ +  +     +        G+   L++I     + GD+K   +F  S
Sbjct: 240 NNSKEHAVRMFSQMLKGNVRVDGF--TLTSIIKTCSKPGDLKHGMQFHGS 287


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 163/471 (34%), Positives = 256/471 (54%), Gaps = 38/471 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G + + + +FD++  +N + +  +I  Y  N    +AL + + +   G  P 
Sbjct: 359 LITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPS 418

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             +   +  ACS   +L  G Q+H   VKVG  +N F  N L+ MYGKC  ++ AR+V +
Sbjct: 419 LSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFS 478

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            M +KD+V+WNS +A   QN   DEA                             + +N+
Sbjct: 479 RMVTKDIVSWNSFLAALVQNDLLDEA---------------------------RNTFDNM 511

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
           LS          ++ VSW  +I+ YA+     EA+  +  M      PN+  +  +L  C
Sbjct: 512 LS----------RDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVC 561

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
           G L A  +G++IH    +  +   L + NAL+ MY KCG   ++R +FD M  +D+ +W 
Sbjct: 562 GSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGC-ADSRRIFDLMEERDIFTWN 620

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           ++I+ Y   G G +A+ ++  M  +G+ P+ + FV +L+ACSHAGL++EG  +FK M++ 
Sbjct: 621 TIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQD 680

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y L P  EH+AC+VDLLGR G V+ A   I  MP+EP+  IW +L+ AC ++ N +IG  
Sbjct: 681 YGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKR 740

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           AA+ +F + P+ +G YV+LSNIY+  G WG+V  VRK M  +G+ K PG S
Sbjct: 741 AAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCS 791



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 176/382 (46%), Gaps = 34/382 (8%)

Query: 79  QMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLK 138
           QMVD R++F+++  +N+V + V+I  Y     +  A  ++  M   G  PD   +   L 
Sbjct: 173 QMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALS 232

Query: 139 ACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK-CGCLKEARRVLNDMPSKDVV 197
           A  G  +L V   +    +K G + ++  G  ++ +Y +    L  A +    M  ++  
Sbjct: 233 AVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEY 292

Query: 198 TWNSMVAGYAQNGRFDEALDV---------------------CREMESLRI------KPD 230
           TW++M+A  +  GR D A+ V                     C  ++  RI      +P 
Sbjct: 293 TWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPI 352

Query: 231 ADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
             +  +L+         N    KE+F K+  +N +SW  MIA YA N    EA+ L  ++
Sbjct: 353 VVSWNALITGYMQNGMVN--EAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQEL 410

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
              G+ P+  S+ S+  AC ++ AL  G ++H    +   Q N    NAL+ MY KC ++
Sbjct: 411 HRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNM 470

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
             AR VF +M  +D+VSW S ++A   +    +A   F  M    L  D +++ +++SA 
Sbjct: 471 EYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAY 526

Query: 411 SHAGLLEEGRYYFKIMTEQYKL 432
           +HA    E    FK M  +++L
Sbjct: 527 AHAEQSNEAMGAFKTMFCEHEL 548



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/452 (22%), Positives = 188/452 (41%), Gaps = 89/452 (19%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           N   G  L+  YG  G++++ R VFD +  +N V +N +I  YV N     A  ++  M 
Sbjct: 95  NMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMP 154

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
                          +  S  NS+L G   +C  ++                      + 
Sbjct: 155 S--------------RDVSSWNSMLTG---YCHSLQ----------------------MV 175

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
           +AR +   MP +++V+W  M++GY +     +A D+  +M    + PD    AS L +V 
Sbjct: 176 DARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVK 235

Query: 243 NTSPENVL----------------------------------SVKEMFLKLDNKNLVSWN 268
                +VL                                  +  + F  +  +N  +W+
Sbjct: 236 GLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWS 295

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL-SALLLGRKIHRYVER 327
            MIA  ++      A+ +Y +  V  I     ++ + L  CG +  A +L  +I      
Sbjct: 296 TMIAALSHGGRIDAAIAVYERDPVKSIACRT-ALITGLAQCGRIDDARILFEQIP----- 349

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
              +P +   NAL+  Y + G + EA+ +FD+M  ++ +SW  MI+ Y  +G+  +A+ L
Sbjct: 350 ---EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGL 406

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC--LVDL 445
             ++  SG+ P   +  S+  ACS+   LE G    ++ +   K+  +   FAC  L+ +
Sbjct: 407 LQELHRSGMLPSLSSLTSIFFACSNIVALETGT---QVHSLAVKVGCQFNSFACNALITM 463

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            G+   +E A  +  +M +  +   W S +AA
Sbjct: 464 YGKCRNMEYARQVFSRM-VTKDIVSWNSFLAA 494



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 102/449 (22%), Positives = 200/449 (44%), Gaps = 61/449 (13%)

Query: 71  MRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDC 130
           +R  G  G++ + R VFD +  ++++ +N +I +Y +N +   A  +Y  +S      + 
Sbjct: 41  IRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAIS----GGNM 96

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
            T   +L        +L   ++   +    L+ N    N +++ Y + G +  ARR+ + 
Sbjct: 97  RTGAILLSGYGRLGRVLEARRVFDGM----LERNTVAWNAMISCYVQNGDITMARRLFDA 152

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL 250
           MPS+DV +WNSM+ GY            C  ++                         ++
Sbjct: 153 MPSRDVSSWNSMLTGY------------CHSLQ-------------------------MV 175

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
             + +F K+  +NLVSW VMI+ Y       +A D++ +M   G+ P+  + AS L A  
Sbjct: 176 DARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVK 235

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS-LTEARTVFDQMRCQDVVSWT 369
            L  L +   +     +   + ++ +  A++++Y++  S L  A   F+ M  ++  +W+
Sbjct: 236 GLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWS 295

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           +MI+A    G+   A+A++ +  +  +   + A ++ L+ C   G +++ R  F+ + E 
Sbjct: 296 TMIAALSHGGRIDAAIAVYERDPVKSIACRT-ALITGLAQC---GRIDDARILFEQIPE- 350

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL--YSNMDIG 487
               P +  +  L+    + G V EA +L  +MP   N   W  ++A       S   +G
Sbjct: 351 ----PIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGMIAGYAQNGRSEEALG 405

Query: 488 ILAADHIFHLAPNQSGY---YVLLSNIYA 513
           +L   H   + P+ S     +   SNI A
Sbjct: 406 LLQELHRSGMLPSLSSLTSIFFACSNIVA 434


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 163/471 (34%), Positives = 256/471 (54%), Gaps = 38/471 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G + + + +FD++  +N + +  +I  Y  N    +AL + + +   G  P 
Sbjct: 359 LITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPS 418

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             +   +  ACS   +L  G Q+H   VKVG  +N F  N L+ MYGKC  ++ AR+V +
Sbjct: 419 LSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFS 478

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            M +KD+V+WNS +A   QN   DEA                             + +N+
Sbjct: 479 RMVTKDIVSWNSFLAALVQNDLLDEA---------------------------RNTFDNM 511

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
           LS          ++ VSW  +I+ YA+     EA+  +  M      PN+  +  +L  C
Sbjct: 512 LS----------RDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVC 561

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
           G L A  +G++IH    +  +   L + NAL+ MY KCG   ++R +FD M  +D+ +W 
Sbjct: 562 GSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGC-ADSRRIFDLMEERDIFTWN 620

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           ++I+ Y   G G +A+ ++  M  +G+ P+ + FV +L+ACSHAGL++EG  +FK M++ 
Sbjct: 621 TIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQD 680

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y L P  EH+AC+VDLLGR G V+ A   I  MP+EP+  IW +L+ AC ++ N +IG  
Sbjct: 681 YGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKR 740

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           AA+ +F + P+ +G YV+LSNIY+  G WG+V  VRK M  +G+ K PG S
Sbjct: 741 AAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCS 791



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 176/382 (46%), Gaps = 34/382 (8%)

Query: 79  QMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLK 138
           QMVD R++F+++  +N+V + V+I  Y     +  A  ++  M   G  PD   +   L 
Sbjct: 173 QMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALS 232

Query: 139 ACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK-CGCLKEARRVLNDMPSKDVV 197
           A  G  +L V   +    +K G + ++  G  ++ +Y +    L  A +    M  ++  
Sbjct: 233 AVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEY 292

Query: 198 TWNSMVAGYAQNGRFDEALDV---------------------CREMESLRI------KPD 230
           TW++M+A  +  GR D A+ V                     C  ++  RI      +P 
Sbjct: 293 TWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPI 352

Query: 231 ADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
             +  +L+         N    KE+F K+  +N +SW  MIA YA N    EA+ L  ++
Sbjct: 353 VVSWNALITGYMQNGMVN--EAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQEL 410

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
              G+ P+  S+ S+  AC ++ AL  G ++H    +   Q N    NAL+ MY KC ++
Sbjct: 411 HRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNM 470

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
             AR VF +M  +D+VSW S ++A   +    +A   F  M    L  D +++ +++SA 
Sbjct: 471 EYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAY 526

Query: 411 SHAGLLEEGRYYFKIMTEQYKL 432
           +HA    E    FK M  +++L
Sbjct: 527 AHAEQSNEAMGAFKTMFCEHEL 548



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/452 (22%), Positives = 188/452 (41%), Gaps = 89/452 (19%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           N   G  L+  YG  G++++ R VFD +  +N V +N +I  YV N     A  ++  M 
Sbjct: 95  NMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMP 154

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
                          +  S  NS+L G   +C  ++                      + 
Sbjct: 155 S--------------RDVSSWNSMLTG---YCHSLQ----------------------MV 175

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
           +AR +   MP +++V+W  M++GY +     +A D+  +M    + PD    AS L +V 
Sbjct: 176 DARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVK 235

Query: 243 NTSPENVL----------------------------------SVKEMFLKLDNKNLVSWN 268
                +VL                                  +  + F  +  +N  +W+
Sbjct: 236 GLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWS 295

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL-SALLLGRKIHRYVER 327
            MIA  ++      A+ +Y +  V  I     ++ + L  CG +  A +L  +I      
Sbjct: 296 TMIAALSHGGRIDAAIAVYERDPVKSIACRT-ALITGLAQCGRIDDARILFEQIP----- 349

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
              +P +   NAL+  Y + G + EA+ +FD+M  ++ +SW  MI+ Y  +G+  +A+ L
Sbjct: 350 ---EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGL 406

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC--LVDL 445
             ++  SG+ P   +  S+  ACS+   LE G    ++ +   K+  +   FAC  L+ +
Sbjct: 407 LQELHRSGMLPSLSSLTSIFFACSNIVALETGT---QVHSLAVKVGCQFNSFACNALITM 463

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
            G+   +E A  +  +M +  +   W S +AA
Sbjct: 464 YGKCRNMEYARQVFSRM-VTKDIVSWNSFLAA 494



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 106/449 (23%), Positives = 201/449 (44%), Gaps = 61/449 (13%)

Query: 71  MRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDC 130
           +R  G  G++ + R VFD +  ++++ +N +I +Y +N +   A  +Y  +S      + 
Sbjct: 41  IRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAIS----GGNM 96

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
            T   +L   SG   L   L+    V    L+ N    N +++ Y + G +  ARR+ + 
Sbjct: 97  RTGAILL---SGYGRLGRVLEAR-RVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDA 152

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL 250
           MPS+DV +WNSM+ GY            C  ++                         ++
Sbjct: 153 MPSRDVSSWNSMLTGY------------CHSLQ-------------------------MV 175

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
             + +F K+  +NLVSW VMI+ Y       +A D++ +M   G+ P+  + AS L A  
Sbjct: 176 DARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVK 235

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS-LTEARTVFDQMRCQDVVSWT 369
            L  L +   +     +   + ++ +  A++++Y++  S L  A   F+ M  ++  +W+
Sbjct: 236 GLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWS 295

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           +MI+A    G+   A+A++ +  +  +   + A ++ L+ C   G +++ R  F+ + E 
Sbjct: 296 TMIAALSHGGRIDAAIAVYERDPVKSIACRT-ALITGLAQC---GRIDDARILFEQIPE- 350

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL--YSNMDIG 487
               P +  +  L+    + G V EA +L  +MP   N   W  ++A       S   +G
Sbjct: 351 ----PIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGMIAGYAQNGRSEEALG 405

Query: 488 ILAADHIFHLAPNQSGY---YVLLSNIYA 513
           +L   H   + P+ S     +   SNI A
Sbjct: 406 LLQELHRSGMLPSLSSLTSIFFACSNIVA 434


>gi|356518950|ref|XP_003528138.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g64310-like [Glycine max]
          Length = 551

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 167/526 (31%), Positives = 289/526 (54%), Gaps = 35/526 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LHA  ++  HL  +P    K++R Y A   +    H+FD+  N++V  +N +IR++  
Sbjct: 23  KQLHA-FLLKTHLSQDPFYATKIVRLYAANNDINSAHHLFDKTPNRSVYLWNSMIRAFAQ 81

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +  +++A+ +++ M      PD +TY CV++AC+ +    +  ++H   V  GL  +   
Sbjct: 82  SQRFFNAISLFRTMLGADISPDGHTYACVIRACANNFDFGMLRRVHGGAVAAGLGRDPVC 141

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            + LVA Y K G + EARRV + +   D+V WNS+++GY   G +D  + +   M    +
Sbjct: 142 CSALVAAYSKLGLVHEARRVFDGIAEPDLVLWNSLISGYGGFGLWDVGMQMFSMMRLFGM 201

Query: 228 KPDADTMASLLPSVTNTSP---------------------------------ENVLSVKE 254
           KPD  T+A LL  + ++                                   +++ S   
Sbjct: 202 KPDGYTLAGLLVGIADSGMLSIGQGLHCLSQKSGLDSDSHVGSLLLSMYSRCKHMASAYR 261

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F  + N +LV+W+ +I  Y+ +    + +  + ++ +   +P+++ +ASVL +   ++ 
Sbjct: 262 VFCSILNPDLVTWSALIVGYSQSGEYEKVLLFFRKLNMESKKPDSVLIASVLASIAQMAN 321

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           + LG ++H Y  R  L+ ++R+ +ALVDMY+KCG L     VF  M  +++VS+ S+I  
Sbjct: 322 VGLGCEVHGYALRHGLELDVRVSSALVDMYSKCGFLHLGICVFRVMPERNIVSFNSVILG 381

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
           +G+ G   +A  +F KML  GL PD   F S+L AC HAGL+++GR  F+ M  ++ +  
Sbjct: 382 FGLHGCASEAFRMFDKMLEKGLVPDEATFSSLLCACCHAGLVKDGREIFQRMKHEFNIRA 441

Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
           R EH+  +V LLG AG++EEAY+L + +P   ++ I G+L++ C +  N ++    A  +
Sbjct: 442 RPEHYVYMVKLLGSAGELEEAYNLTQSLPEPVDKAILGALLSCCNICGNSELAETVAHQL 501

Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           F  +P  + Y V+LSNIYA  GRW DVK++R  M + G +KMPG S
Sbjct: 502 FESSPADNVYRVMLSNIYAGDGRWDDVKKLRDNM-TGGPRKMPGLS 546



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 90/192 (46%), Gaps = 10/192 (5%)

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           +LL  +++H ++ +  L  +      +V +YA    +  A  +FD+   + V  W SMI 
Sbjct: 18  SLLRAKQLHAFLLKTHLSQDPFYATKIVRLYAANNDINSAHHLFDKTPNRSVYLWNSMIR 77

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA---GLLEEGRYYFKIMTEQY 430
           A+  S + ++A++LF  ML + + PD   +  V+ AC++    G+L   R +   +    
Sbjct: 78  AFAQSQRFFNAISLFRTMLGADISPDGHTYACVIRACANNFDFGMLR--RVHGGAVAAGL 135

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG--I 488
              P     + LV    + G V EA  +   +  EP+  +W SL++    +   D+G  +
Sbjct: 136 GRDPVC--CSALVAAYSKLGLVHEARRVFDGIA-EPDLVLWNSLISGYGGFGLWDVGMQM 192

Query: 489 LAADHIFHLAPN 500
            +   +F + P+
Sbjct: 193 FSMMRLFGMKPD 204


>gi|225468012|ref|XP_002270478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 602

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 163/474 (34%), Positives = 268/474 (56%), Gaps = 36/474 (7%)

Query: 113 DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV 172
           +AL  +  M+  G  P  +     L +C+   +  +G+QIH  +++ G + NLF  + LV
Sbjct: 84  EALESFWRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNLFLNSALV 143

Query: 173 AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
            +Y KC  + +A+RV + M   D V+W S+++G+++NGR  EA+   +EM   +IKP+  
Sbjct: 144 DLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGSQIKPNCV 203

Query: 233 TMASLLPSVTNTSP-------------ENVLSVKE---------------------MFLK 258
           T  S++ + T                 +    VK                      +F  
Sbjct: 204 TYVSVISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQAVLLFGT 263

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
              ++ + +N MI+ Y+ N    EA+ L+++M  +G+ P   ++ S+L ACG L+ L  G
Sbjct: 264 TIERDNILFNSMISGYSQNLFGEEALKLFVEMRNNGLNPTDHTLTSILNACGSLTILQQG 323

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           R++H  V +   + N+ + +AL+DMY+KCGS+ EAR VFDQ   ++ V WTSMI+ Y  S
Sbjct: 324 RQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFDQAVEKNTVLWTSMITGYAQS 383

Query: 379 GQGYDAVALFSKMLMS-GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
           G+G + + LF +++   G  PD I F +VL+AC+HAG L++G  YF  M   Y LVP ++
Sbjct: 384 GRGPEGLGLFERLVTEEGFTPDHICFTAVLTACNHAGFLDKGIDYFNQMRRDYGLVPDLD 443

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHL 497
            +ACLVDL  R G + +A +L++ +P EPN  +WGS +++C LY   ++G  AAD +F +
Sbjct: 444 QYACLVDLYVRNGHLRKAKELMEAIPCEPNSVMWGSFLSSCKLYGEAELGREAADKLFKM 503

Query: 498 APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            P  +  YV +++IYA+AG W +V  +RK M  KG++K  G S VE++ +V + 
Sbjct: 504 EPCSTAPYVAMASIYAQAGLWSEVVEIRKLMKQKGLRKSAGWSWVEVDKRVHVF 557



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 187/423 (44%), Gaps = 49/423 (11%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           ++HA+II       N  +   L+  Y  C  +VD + VFD +   + V +  +I  +  N
Sbjct: 122 QIHARII-QTGFEDNLFLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKN 180

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI-HCSVVKVGLDYNLFN 167
               +A+  +K M      P+C TY  V+ AC+G  ++     + H  VVK+G     F 
Sbjct: 181 GRGKEAILFFKEMLGSQIKPNCVTYVSVISACTGLETIFDQCALLHAHVVKLGFGVKTFV 240

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            + L+  Y KCG + +A  +      +D + +NSM++GY+QN   +EAL +  EM +  +
Sbjct: 241 VSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLFGEEALKLFVEMRNNGL 300

Query: 228 KPDADTMASLLPSVTN-----------------TSPENVLSVKEM--------------- 255
            P   T+ S+L +  +                  S  NV  V  +               
Sbjct: 301 NPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARC 360

Query: 256 -FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV-HGIEPNAISVASVLPACGDLS 313
            F +   KN V W  MI  YA +    E + L+ ++    G  P+ I   +VL AC    
Sbjct: 361 VFDQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVTEEGFTPDHICFTAVLTACN--H 418

Query: 314 ALLLGRKIHRYVERKK---LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWT 369
           A  L + I  + + ++   L P+L     LVD+Y + G L +A+ + + + C+ + V W 
Sbjct: 419 AGFLDKGIDYFNQMRRDYGLVPDLDQYACLVDLYVRNGHLRKAKELMEAIPCEPNSVMWG 478

Query: 370 SMISA---YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           S +S+   YG +  G +A     KM      P    +V++ S  + AGL  E     K+M
Sbjct: 479 SFLSSCKLYGEAELGREAADKLFKMEPCSTAP----YVAMASIYAQAGLWSEVVEIRKLM 534

Query: 427 TEQ 429
            ++
Sbjct: 535 KQK 537



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 141/310 (45%), Gaps = 17/310 (5%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  CG++     +F     ++ + FN +I  Y  N    +AL ++  M  +G +P 
Sbjct: 244 LIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLFGEEALKLFVEMRNNGLNPT 303

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +T   +L AC     L  G Q+H  V K+G + N+F  + L+ MY KCG + EAR V +
Sbjct: 304 DHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFD 363

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR-IKPDADTMASLLPSVTNTS--P 246
               K+ V W SM+ GYAQ+GR  E L +   + +     PD     ++L +  +     
Sbjct: 364 QAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVTEEGFTPDHICFTAVLTACNHAGFLD 423

Query: 247 ENVLSVKEMFLKLDNK---NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
           + +    +M  + D     +L  +  ++ +Y  N    +A +L   ME    EPN++   
Sbjct: 424 KGIDYFNQM--RRDYGLVPDLDQYACLVDLYVRNGHLRKAKEL---MEAIPCEPNSVMWG 478

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQP-NLRLENALVDMYAKCG---SLTEARTVFDQ 359
           S L +C       LGR+    +   K++P +     A+  +YA+ G    + E R +  Q
Sbjct: 479 SFLSSCKLYGEAELGREAADKL--FKMEPCSTAPYVAMASIYAQAGLWSEVVEIRKLMKQ 536

Query: 360 MRCQDVVSWT 369
              +    W+
Sbjct: 537 KGLRKSAGWS 546


>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 553

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 178/525 (33%), Positives = 285/525 (54%), Gaps = 51/525 (9%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +L     IK LK++H QII+N     N  + +KL+  Y   G +++   VF+ I N +  
Sbjct: 24  LLQTCDTIKKLKQIHTQIIVNGFSQKNFLL-VKLLSFYITSGNLLNAHKVFERIENPSTT 82

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +N +IR +  +   +  + +Y  M     +P+ +TY  ++  C+ S  L  G Q+H  V
Sbjct: 83  VWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRV 142

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGC---LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
           V  G   N+F    LV +Y   G    +++ARRV +++  +++V+WNS++AGY + G  D
Sbjct: 143 VANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVD 202

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273
            A  +  EM                       PE              +N+VSW  MIA 
Sbjct: 203 GARRIFDEM-----------------------PE--------------RNVVSWTTMIAG 225

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
            A      +A+ L+ +M   G++ + +++ + L AC +L  L LG  IH Y++ +    N
Sbjct: 226 CAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGN 285

Query: 334 ----LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
               + L N+L+ MYA CG + +A  VF  M+ +  +SWTSMI+ +   G   +A+ +F 
Sbjct: 286 QPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQ 345

Query: 390 KMLMSGL---CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
            M   G     PD I F+ VL ACSHAG +++GR++F+ M +++ +VPRIEH+ C+VDLL
Sbjct: 346 WMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLL 405

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI-FHLAPNQ-SGY 504
            RAG ++EA+ LI+ MPM+PN+ +WG+L+  C ++ N ++    A  +   L P+Q +GY
Sbjct: 406 SRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLALELKPDQAAGY 465

Query: 505 YVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            VLLSN+YA A RW DV  VR+ M   G++K  G S V++N  V 
Sbjct: 466 LVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQINGVVH 510


>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
          Length = 613

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 181/506 (35%), Positives = 277/506 (54%), Gaps = 58/506 (11%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD---TRHVFDEITNKNVVFFNV 100
           ++ LK+LHAQ+I    +  +P    +L+R + A     D    R +F  +   N   +N 
Sbjct: 1   MQDLKQLHAQMIKTAQIR-DPLAAAELLR-FSAVSDHRDLDYARKIFRSMHRPNCFSYNT 58

Query: 101 LIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
           LIR+   +    DAL V+  M      +P+C+T+P V KAC  +  L  G Q+H   VK 
Sbjct: 59  LIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKF 118

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEA-----RRVLND----------MPSKDVVTWNSMVA 204
           GLD + F  + +V MY  CG +++A     RRV  D              DVV WN M+ 
Sbjct: 119 GLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMID 178

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL 264
           GY + G  + A                                     + +F ++  +++
Sbjct: 179 GYVRIGELEVA-------------------------------------RNLFDEMPQRSV 201

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           VSWNVMIA YA +    EAV+++ +M++  + PN +++ SVLPA   L AL LG+ +H Y
Sbjct: 202 VSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLY 261

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
             R  +  +  L +AL+DMYAKCGS+ +A  VF+ +  ++VV+W+++I+   M G+  D 
Sbjct: 262 AVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDT 321

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           +  F  M  +G+ P  + ++ +LSACSHAGL+ EGR++F  M     L PRIEH+ C+VD
Sbjct: 322 LDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVD 381

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY 504
           LLGRAG +EE+ +LI  MP++P++ IW +L+ AC ++ N+++G   A+H+  LAP+ SG 
Sbjct: 382 LLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGS 441

Query: 505 YVLLSNIYAKAGRWGDVKRVRKFMNS 530
           YV LSNIYA  G W  V +VR  M  
Sbjct: 442 YVALSNIYASLGNWEGVAKVRLMMKE 467



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 91/199 (45%), Gaps = 6/199 (3%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y  CG +     VF+ +  +NVV ++ +I     +    D L  +++M   G
Sbjct: 273 LGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAG 332

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV-GLDYNLFNGNGLVAMYGKCGCLKEA 184
             P   TY  +L ACS +  +  G      +V+V GL+  + +   +V + G+ G L+E+
Sbjct: 333 VMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEES 392

Query: 185 RRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD--TMASLLPSV 241
             ++ +MP K D V W +++     +G  +    V   +  L          ++++  S+
Sbjct: 393 EELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASL 452

Query: 242 TNTSPENVLSVKEMFLKLD 260
            N   E V  V+ M  ++D
Sbjct: 453 GNW--EGVAKVRLMMKEMD 469


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 183/583 (31%), Positives = 293/583 (50%), Gaps = 44/583 (7%)

Query: 2   KAVVLLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLH 61
           K + L C+            LST   +L G A          ++  K LHA + +     
Sbjct: 34  KVLKLFCKMKECETKFSKFTLST---VLKGCA------NTGSLREGKVLHA-LALRSGCE 83

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
            +  +G  L+  Y  CG + D   VF +I N +VV ++ +I          +A  ++  M
Sbjct: 84  IDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLM 143

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              G  P+ +T   ++   +    L  G  IH  + K G + +    N L+ MY K  C+
Sbjct: 144 RRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCV 203

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS- 240
           ++  +V   M + D+V+WN++++G+  +        +  +M     KP+  T  S+L S 
Sbjct: 204 EDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSC 263

Query: 241 ----------------VTNTSPENVL---SVKEMFLK-------------LDNKNLVSWN 268
                           + N+S ++     ++ +M+ K             L N+++ SW 
Sbjct: 264 SSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWT 323

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
           V+I+ YA      +AV  + QM+  GI+PN  ++AS L  C  ++ L  GR++H    + 
Sbjct: 324 VIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKA 383

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
               ++ + +ALVD+Y KCG +  A  +F  +  +D+VSW ++IS Y   GQG  A+  F
Sbjct: 384 GHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAF 443

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
             ML  G+ PD   F+ VLSACS  GL+EEG+  F  M++ Y + P IEH+AC+VD+LGR
Sbjct: 444 RMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGR 503

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508
           AGK  E    I++M + P   IW +++ AC L+ N+D G  AA  +F + P     Y+LL
Sbjct: 504 AGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILL 563

Query: 509 SNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           SNI+A  GRW DV+ +R  M S+GIKK PG S VE++ QV + 
Sbjct: 564 SNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVF 606



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/523 (25%), Positives = 229/523 (43%), Gaps = 84/523 (16%)

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
              +F  +  KN V +N L+  Y         L ++  M         +T   VLK C+ 
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
           + SL  G  +H   ++ G + + F G  LV MY KCG + +A +V   + + DVV W++M
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN------------------- 243
           + G  Q G   EA ++   M     +P+  T++SL+ + TN                   
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGF 183

Query: 244 ------TSPENVLSVK--------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
                 ++P  ++ +K        ++F  + N +LVSWN +++ + ++        ++ Q
Sbjct: 184 ESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQ 243

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M + G +PN  +  SVL +C  L     G+++H ++ +     +  +  ALVDMYAK   
Sbjct: 244 MLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARC 303

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           L +A   FD++  +D+ SWT +IS Y  + Q   AV  F +M   G+ P+     S LS 
Sbjct: 304 LEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSG 363

Query: 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHF------ACLVDLLGRAGKVE---------- 453
           CSH   LE GR       + + +  +  HF      + LVDL G+ G +E          
Sbjct: 364 CSHMATLENGR-------QLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLI 416

Query: 454 ------------------------EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
                                   EA+ ++    + P+E  +  +++AC     ++ G  
Sbjct: 417 SRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKK 476

Query: 490 AAD---HIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529
             D    I+ + P+   +Y  + +I  +AG++ +VK   + MN
Sbjct: 477 RFDSMSKIYGINPSIE-HYACMVDILGRAGKFNEVKIFIEEMN 518


>gi|297738048|emb|CBI27249.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 196/641 (30%), Positives = 311/641 (48%), Gaps = 105/641 (16%)

Query: 1   MKAVVLLCRHFS----------TTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKL 50
           MK + LL RH             T  +   + S Q   +S + C  +L     + +L+K+
Sbjct: 48  MKRISLLHRHLQWRNLTVTALQRTPEIDRTIASIQS--ISSNPCFSLLGICKTVSSLRKI 105

Query: 51  HAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYL 110
           HA ++++  L  +     KL+  YG+ G +   R +FD I N ++  + V+IR Y  N  
Sbjct: 106 HALLVVHG-LSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDS 164

Query: 111 YYDALHVYKNMSVHGFDP-DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
           Y + +  Y        +  D   +  VLKACS       G ++HC +VKVG   + F   
Sbjct: 165 YSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVG-SPDSFVLT 223

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
           GLV MY KC  ++++RRV +++  ++VV W SM+ GY QN    E L +   M    ++ 
Sbjct: 224 GLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEG 283

Query: 230 DADTMASLLPSVTN-------------------------TSP--------ENVLSVKEMF 256
           +  T+ SL+ + T                           +P         ++     +F
Sbjct: 284 NQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVF 343

Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
            +L   +LVSW  MI  YA    P EA+ L+       + PN ++ +SVL AC    +L 
Sbjct: 344 DELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLN 403

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
           +GR +H  +  K    +   ENALVDMYAKC  + +AR VF+ +  +DV++W S+IS Y 
Sbjct: 404 MGRSVH-CLGIKLGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYT 462

Query: 377 MSGQGYDAVALFSKM---------------------------------------LMSG-- 395
            +G  Y+A+ LF +M                                       L+SG  
Sbjct: 463 QNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGRD 522

Query: 396 ---------------LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA 440
                          L P+ + F ++LSACSH+G+L EG  YF  M + Y  VP ++H+A
Sbjct: 523 CSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYA 582

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500
           C+VDLL RAG++EEA D I+++P++P+  + G+ +  C L+S  D+G +A   +  L P+
Sbjct: 583 CMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHPD 642

Query: 501 QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           ++ YYVL+SN+YA  GRW    +V + M  +G+ K+PG S+
Sbjct: 643 KACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSL 683


>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 158/501 (31%), Positives = 274/501 (54%), Gaps = 39/501 (7%)

Query: 41  YPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           +PD    K++    ++     S+  +   L+  Y  C +    R +FD + ++++V +N 
Sbjct: 152 FPDSILAKEVQC-FVLRHGFDSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNS 210

Query: 101 LIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
           +I  Y     Y D   +Y+ M    G  P+  T   VL+AC+ +N L+ G+++H  +++ 
Sbjct: 211 MIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIER 270

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
            ++ ++   N L+ +Y KCG L  AR + N+M +KD VT+ S+V+GY  +G  D+A+D+ 
Sbjct: 271 KVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLF 330

Query: 220 REMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSM 279
           REM+                                     N  L +WN +I+    N+ 
Sbjct: 331 REMK-------------------------------------NPRLSTWNAVISGLVQNNC 353

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
               ++L  +M+  G  PNA++++S+LP     S L  G+ IH Y  R     N+ +  +
Sbjct: 354 NEGILELVQEMQEFGFRPNAVTLSSILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATS 413

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           ++D YAK G L  A+ VFDQ + + ++ WT++ISAY   G    A+ LF  ML +G  PD
Sbjct: 414 IIDAYAKLGFLRGAQWVFDQSKDRSLIVWTAIISAYSAHGDANAALRLFGDMLSNGTQPD 473

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
            + F +VL+AC+H+G++ E    F  M  +Y   P +EH+AC+V +L RAG + EA + I
Sbjct: 474 PVTFTAVLAACAHSGMVNEAWKIFDEMFLKYGFQPCVEHYACMVGVLSRAGMLSEAAEFI 533

Query: 460 KQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519
            +MP+EPN ++WG+L+    +  ++++G    DH+F++ P  +G YV+++N+Y++AGRW 
Sbjct: 534 CKMPIEPNAKVWGALLNGVSVSGDVELGKFVCDHLFNMEPENTGNYVIMANLYSQAGRWE 593

Query: 520 DVKRVRKFMNSKGIKKMPGAS 540
           + + +R+ M   G+KK+PG S
Sbjct: 594 EAENIREKMKKIGLKKIPGTS 614



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 181/382 (47%), Gaps = 45/382 (11%)

Query: 116 HVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
           H  +N+ SV+G D   +    +++ CS    L    Q+H  +V   L  + F  + L+  
Sbjct: 21  HCLQNLCSVNGLDYGAFGR--LIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITF 78

Query: 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG---RFDEALDVCREMESLRIKPDA 231
           Y K   L EA +V + +  K++ +WN+M+ GY+ +         L       SL +KPD 
Sbjct: 79  YSKSNHLYEAHKVFDKILDKNIFSWNAMLIGYSIHNMHVHTLNLLSSLLPSYSLTLKPDN 138

Query: 232 DTMASLLPSVTNTSPENVLS----------------------------------VKEMFL 257
            T+  +L +++   P+++L+                                   + +F 
Sbjct: 139 FTITCVLKALSVLFPDSILAKEVQCFVLRHGFDSDIFVVNALITYYSRCDEYGIARILFD 198

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALL 316
           ++ ++++VSWN MIA Y+      +  +LY +M +  G+ PN ++V SVL AC   + L+
Sbjct: 199 RMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLV 258

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
            G K+H+++  +K++ ++   N+L+ +YAKCGSL  AR +F++M  +D V++ S++S Y 
Sbjct: 259 FGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYM 318

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE--EGRYYFKIMTEQYKLVP 434
             G    A+ LF +M    L   +     ++    + G+LE  +    F        L  
Sbjct: 319 THGFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSS 378

Query: 435 RIEHFACLVDLLGRAGKVEEAY 456
            +  F+C  +L G  GK   AY
Sbjct: 379 ILPTFSCFSNLKG--GKAIHAY 398


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 171/540 (31%), Positives = 285/540 (52%), Gaps = 47/540 (8%)

Query: 56  INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDAL 115
           I+  L ++  +   L+  Y  C  + D  H+F  +  +++V +N ++  Y ++ +Y+ A+
Sbjct: 37  IHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAV 96

Query: 116 -HVYK-NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN--------- 164
            H+    M +H   P+  T   +L   +   +L  G  +H   ++  L  N         
Sbjct: 97  AHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTD 156

Query: 165 -LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE--------- 214
            +  G  L+ MY KCG L  ARRV + MP+++ VTW++++ G+    R  +         
Sbjct: 157 GVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAML 216

Query: 215 --------------ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL---------- 250
                         AL  C  ++ LR+      + +      + +  N L          
Sbjct: 217 AQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLI 276

Query: 251 -SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                +F ++  K+ VS++ +++ Y  N    EA  ++ +M+   +EP+A ++ S++PAC
Sbjct: 277 DQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC 336

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L+AL  GR  H  V  + L     + NAL+DMYAKCG +  +R VF+ M  +D+VSW 
Sbjct: 337 SHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWN 396

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           +MI+ YG+ G G +A ALF +M   G  PD + F+ +LSACSH+GL+ EG+++F +M   
Sbjct: 397 TMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHG 456

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y L PR+EH+ C+VDLL R G ++EAY+ I+ MP+  + R+W +L+ AC +Y N+D+G  
Sbjct: 457 YGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKK 516

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            +  I  L P  +G +VLLSNIY+ AGR+ +   VR     +G KK PG S +E+N  + 
Sbjct: 517 VSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLH 576



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 190/405 (46%), Gaps = 52/405 (12%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M  H   P+ YT+P  LKACS       G  IH   +  GL  +LF    L+ MY KC C
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD--VCREMESLRIKPDADTMASLL 238
           L +A  +   MP++D+V WN+M+AGYA +G +  A+   +  +M+  R++P+A T+ +LL
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 239 PSVTNTSP-------------------------------------------ENVLSVKEM 255
           P +                                                 ++L  + +
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG---IEPNAISVASVLPACGDL 312
           F  +  +N V+W+ +I  +   S   +A  L+  M   G   + P   S+AS L AC  L
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASL 238

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
             L +G ++H  + +  +  +L   N+L+ MYAK G + +A  +FD+M  +D VS+++++
Sbjct: 239 DHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALV 298

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           S Y  +G+  +A  +F KM    + PD+   VS++ ACSH   L+ GR     +  +  L
Sbjct: 299 SGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GL 357

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
                    L+D+  + G+++ +  +   MP   +   W +++A 
Sbjct: 358 ASETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAG 401



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 150/315 (47%), Gaps = 14/315 (4%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LHA ++    +H++ + G  L+  Y   G +     +FDE+  K+ V ++ L+  YV 
Sbjct: 245 EQLHA-LLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQ 303

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    +A  V+K M     +PD  T   ++ ACS   +L  G   H SV+  GL      
Sbjct: 304 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI 363

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY KCG +  +R+V N MPS+D+V+WN+M+AGY  +G   EA  +  EM +L  
Sbjct: 364 CNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGF 423

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLVSWNVMIAVYANNSMPAE 282
            PD  T   LL + +++    V+  K  F  + +       +  +  M+ + +      E
Sbjct: 424 PPDGVTFICLLSACSHSGL--VIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDE 481

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV- 341
           A +    M    +  +     ++L AC     + LG+K+ R ++  +L P       L+ 
Sbjct: 482 AYEFIQSMP---LRADVRVWVALLGACRVYKNIDLGKKVSRMIQ--ELGPEGTGNFVLLS 536

Query: 342 DMYAKCGSLTEARTV 356
           ++Y+  G   EA  V
Sbjct: 537 NIYSAAGRFDEAAEV 551



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 96/211 (45%), Gaps = 12/211 (5%)

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M  H + PN  +    L AC  L+    GR IHR+     LQ +L +  AL+DMY KC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA--LFSKMLMSGLCPDSIAFVSVL 407
           L +A  +F  M  +D+V+W +M++ Y   G  + AVA  L  +M M  L P++   V++L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 408 SACSHAGLLEEGR----YYFKI-----MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
              +  G L +G     Y  +         + KL   +     L+D+  + G +  A  +
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
              MP   NE  W +L+    L S M    L
Sbjct: 181 FDAMPAR-NEVTWSALIGGFVLCSRMTQAFL 210


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 164/461 (35%), Positives = 260/461 (56%), Gaps = 40/461 (8%)

Query: 127 DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR 186
           +P   T+  ++ +C+  NSL  GL +H  +V  G D + F    L+ MY + G +  AR+
Sbjct: 75  NPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARK 134

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--VTNT 244
           V ++   + +  WN++    A  G   E LD+  +M  + I  D  T   +L +  V+  
Sbjct: 135 VFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSEL 194

Query: 245 SPENVLSVKEM-----------------------------------FLKLDNKNLVSWNV 269
           S   +   KE+                                   F  +  KN VSW+ 
Sbjct: 195 SVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSA 254

Query: 270 MIAVYANNSMPAEAVDLY--LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
           MIA +A N MP +A++L+  + +E H   PN++++ +VL AC  L+AL  G+ IH Y+ R
Sbjct: 255 MIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILR 314

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
           + L   L + NAL+ MY +CG +   + VFD M+ +DVVSW S+IS YGM G G  A+ +
Sbjct: 315 RGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQI 374

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           F  M+  G  P  I+F++VL ACSHAGL+EEG+  F+ M  +Y++ P +EH+AC+VDLLG
Sbjct: 375 FENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLG 434

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507
           RA +++EA  LI+ M  EP   +WGSL+ +C ++ N+++   A+  +F L P  +G YVL
Sbjct: 435 RANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVL 494

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           L++IYA+A  W + K V K + ++G++K+PG S +E+  +V
Sbjct: 495 LADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKV 535



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 165/361 (45%), Gaps = 41/361 (11%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           +++     +P +  KL+  Y   G +   R VFDE   + +  +N L R+        + 
Sbjct: 104 LVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKEL 163

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGS----NSLLVGLQIHCSVVKVGLDYNLFNGNG 170
           L +Y  M+  G   D +TY  VLKAC  S    + L  G +IH  +++ G + N+     
Sbjct: 164 LDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTT 223

Query: 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM--ESLRIK 228
           L+ +Y K G +  A  V   MP+K+ V+W++M+A +A+N    +AL++ + M  E+    
Sbjct: 224 LLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSV 283

Query: 229 PDADTMASLLPSVTNTSP----------------ENVLSV-----------------KEM 255
           P++ TM ++L +    +                 +++L V                 + +
Sbjct: 284 PNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRV 343

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F  + N+++VSWN +I++Y  +    +A+ ++  M   G  P+ IS  +VL AC     +
Sbjct: 344 FDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLV 403

Query: 316 LLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMIS 373
             G+ +   +  K ++ P +     +VD+  +   L EA  + + M  +     W S++ 
Sbjct: 404 EEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLG 463

Query: 374 A 374
           +
Sbjct: 464 S 464



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 148/319 (46%), Gaps = 16/319 (5%)

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
           N N L+    K G LK+A  +L   P+    T+  ++   AQ     + LDV R + S  
Sbjct: 49  NNNQLIQSLCKGGNLKQAIHLLCCEPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSG 108

Query: 227 IKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
              D      L+         ++   +++F +   + +  WN +    A      E +DL
Sbjct: 109 FDQDPFLATKLINMYYELG--SIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDL 166

Query: 287 YLQMEVHGIEPNAISVASVLPACG----DLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           Y+QM   GI  +  +   VL AC      +S L  G++IH ++ R   + N+ +   L+D
Sbjct: 167 YVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLD 226

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG--LCPDS 400
           +YAK GS++ A +VF  M  ++ VSW++MI+ +  +     A+ LF  M++      P+S
Sbjct: 227 VYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNS 286

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV---EEAYD 457
           +  V+VL AC+    LE+G+     +  +  L   +     L+ + GR G++   +  +D
Sbjct: 287 VTMVNVLQACAGLAALEQGKLIHGYILRR-GLDSILPVLNALITMYGRCGEILMGQRVFD 345

Query: 458 LIKQMPMEPNERIWGSLVA 476
            +K   +      W SL++
Sbjct: 346 NMKNRDVVS----WNSLIS 360



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 150/323 (46%), Gaps = 28/323 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++HA I+ + +  +N  +   L+  Y   G +     VF  +  KN V ++ +I  +  
Sbjct: 203 KEIHAHILRHGY-EANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAK 261

Query: 108 NYLYYDALHVYKNMSVHGFD--PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
           N +   AL +++ M +   D  P+  T   VL+AC+G  +L  G  IH  +++ GLD  L
Sbjct: 262 NEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSIL 321

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
              N L+ MYG+CG +   +RV ++M ++DVV+WNS+++ Y  +G   +A+ +   M   
Sbjct: 322 PVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQ 381

Query: 226 RIKPDADTMASLLPSVTNTS--PENVLSVKEMFLKLD-NKNLVSWNVMIAVYANNSMPAE 282
              P   +  ++L + ++     E  +  + M  K   +  +  +  M+ +    +   E
Sbjct: 382 GSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDE 441

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE----N 338
           A+ L   M     EP      S+L +C          +IH  VE  +    L  E    N
Sbjct: 442 AIKLIEDMH---FEPGPTVWGSLLGSC----------RIHCNVELAERASTLLFELEPRN 488

Query: 339 A-----LVDMYAKCGSLTEARTV 356
           A     L D+YA+    +EA++V
Sbjct: 489 AGNYVLLADIYAEAKMWSEAKSV 511



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 12/195 (6%)

Query: 296 EPNAI--SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
           EPN    +   ++ +C   ++L  G  +HR +       +  L   L++MY + GS+  A
Sbjct: 73  EPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRA 132

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
           R VFD+ R + +  W ++  A  M G G + + L+ +M   G+  D   +  VL AC  +
Sbjct: 133 RKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVS 192

Query: 414 GL----LEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
            L    L++G+  +  I+   Y+    I     L+D+  + G V  A  +   MP + N 
Sbjct: 193 ELSVSPLQKGKEIHAHILRHGYE--ANIHVMTTLLDVYAKFGSVSYANSVFCAMPTK-NF 249

Query: 469 RIWGSLVAACCLYSN 483
             W +++A  C   N
Sbjct: 250 VSWSAMIA--CFAKN 262


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 174/543 (32%), Positives = 291/543 (53%), Gaps = 53/543 (9%)

Query: 56  INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDAL 115
           I+  L ++  +   L+  Y  C  + D  H+F  +  +++V +N ++  Y ++ +Y+ A+
Sbjct: 152 IHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAV 211

Query: 116 -HVYK-NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN--------- 164
            H+    M +H   P+  T   +L   +   +L  G  +H   ++  L  N         
Sbjct: 212 AHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTD 271

Query: 165 -LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE--------- 214
            +  G  L+ MY KCG L  ARRV + MP+++ VTW++++ G+    R  +         
Sbjct: 272 GVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAML 331

Query: 215 --------------ALDVCREMESLRIKPDADTMASLLPS----VTNTSPENVLSVK--- 253
                         AL  C  ++ LR+    + + +LL         T+  ++LS+    
Sbjct: 332 AQGLCFLSPTSIASALRACASLDHLRM---GEQLHALLAKSGVHADLTAGNSLLSMYAKA 388

Query: 254 -------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
                   +F ++  K+ VS++ +++ Y  N    EA  ++ +M+   +EP+A ++ S++
Sbjct: 389 GLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLI 448

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
           PAC  L+AL  GR  H  V  + L     + NAL+DMYAKCG +  +R VF+ M  +D+V
Sbjct: 449 PACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIV 508

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           SW +MI+ YG+ G G +A ALF +M   G  PD + F+ +LSACSH+GL+ EG+++F +M
Sbjct: 509 SWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVM 568

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
              Y L PR+EH+ C+VDLL R G ++EAY+ I+ MP+  + R+W +L+ AC +Y N+D+
Sbjct: 569 RHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDL 628

Query: 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMND 545
           G   +  I  L P  +G +VLLSNIY+ AGR+ +   VR     +G KK PG S +E+N 
Sbjct: 629 GKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEING 688

Query: 546 QVQ 548
            + 
Sbjct: 689 SLH 691



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 220/452 (48%), Gaps = 54/452 (11%)

Query: 76  ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN--YLYYDALHVYKNMSVHGFDPDCYTY 133
           A G +    H+FD+I + +V  +N LIR+Y ++      D LH+Y+ M  H   P+ YT+
Sbjct: 69  ASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTF 128

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
           P  LKACS       G  IH   +  GL  +LF    L+ MY KC CL +A  +   MP+
Sbjct: 129 PFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPA 188

Query: 194 KDVVTWNSMVAGYAQNGRFDEALD--VCREMESLRIKPDADTMASLLP------------ 239
           +D+V WN+M+AGYA +G +  A+   +  +M+  R++P+A T+ +LLP            
Sbjct: 189 RDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGT 248

Query: 240 ------------SVTNTSPE-------------------NVLSVKEMFLKLDNKNLVSWN 268
                       S  N+  +                   ++L  + +F  +  +N V+W+
Sbjct: 249 SVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS 308

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHG---IEPNAISVASVLPACGDLSALLLGRKIHRYV 325
            +I  +   S   +A  L+  M   G   + P   S+AS L AC  L  L +G ++H  +
Sbjct: 309 ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHALL 366

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
            +  +  +L   N+L+ MYAK G + +A  +FD+M  +D VS+++++S Y  +G+  +A 
Sbjct: 367 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAF 426

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
            +F KM    + PD+   VS++ ACSH   L+ GR     +  +  L         L+D+
Sbjct: 427 LVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSICNALIDM 485

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             + G+++ +  +   MP   +   W +++A 
Sbjct: 486 YAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAG 516



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 150/315 (47%), Gaps = 14/315 (4%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LHA ++    +H++ + G  L+  Y   G +     +FDE+  K+ V ++ L+  YV 
Sbjct: 360 EQLHA-LLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQ 418

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    +A  V+K M     +PD  T   ++ ACS   +L  G   H SV+  GL      
Sbjct: 419 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI 478

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY KCG +  +R+V N MPS+D+V+WN+M+AGY  +G   EA  +  EM +L  
Sbjct: 479 CNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGF 538

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN-----KNLVSWNVMIAVYANNSMPAE 282
            PD  T   LL + +++    V+  K  F  + +       +  +  M+ + +      E
Sbjct: 539 PPDGVTFICLLSACSHSGL--VIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDE 596

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV- 341
           A +    M    +  +     ++L AC     + LG+K+ R ++  +L P       L+ 
Sbjct: 597 AYEFIQSMP---LRADVRVWVALLGACRVYKNIDLGKKVSRMIQ--ELGPEGTGNFVLLS 651

Query: 342 DMYAKCGSLTEARTV 356
           ++Y+  G   EA  V
Sbjct: 652 NIYSAAGRFDEAAEV 666


>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
          Length = 667

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 177/529 (33%), Positives = 281/529 (53%), Gaps = 44/529 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y +CG +     VF  + N+ VV +N +I   V N     AL V+  M+  G   D
Sbjct: 149 LISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGID 208

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   VL AC+ +  L  G  +H  V   GL   +   N L+ MYGKC  L++ARRV +
Sbjct: 209 RATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFD 268

Query: 190 DMP-SKDVVTWNSMVAGYAQNGRFDEALDV-CREMESLRIKPDADTMASLL------PSV 241
                KDVV+W +M+  Y  N R  EA+ + C+ + S    P+  TM  LL      PS 
Sbjct: 269 HCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSG 328

Query: 242 TNTSPENVLSVK--------------------------EMFLKLDNKNLVSWNVMIAVYA 275
            +    + L ++                           + L+  +    +WN  ++ Y 
Sbjct: 329 KHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKLMRLTLERGSWRAETWNAALSGYT 388

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            +    +A++L+ +M    + P++ ++AS+LPA  + + L  G+ IH ++       +  
Sbjct: 389 VSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTE 448

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           +   L+D+Y+K G L  A  +F  +  +DVV+WT++I+ YG+ G    A+ L+ +M+ SG
Sbjct: 449 IATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYGIHGHARTAILLYDRMVESG 508

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
             P+++   ++L ACSHAG+++EG   FK M   + L+P  EH++CLVD+LGRAG++EEA
Sbjct: 509 GKPNTVTIATLLYACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEA 568

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
           + LI+ MP EP+  +WG+L+ AC L+ N++ G +AA  +F L P  +G YVLL NIYA A
Sbjct: 569 HRLIQDMPFEPSTSVWGALLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIYAAA 628

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQIIALPLRSSKCLTTGP 564
            RW DV+ VR+ M  +G+ K PG+S+          +  RS +C T  P
Sbjct: 629 DRWRDVQDVRRMMVERGLLKEPGSSL----------VEARSVQCRTAMP 667



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 210/461 (45%), Gaps = 43/461 (9%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKN-VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
           L   Y ACG+     ++  ++     V F N L+RSY     + +AL VY  M       
Sbjct: 51  LFMVYCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMRAF---- 106

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D  T+P   KAC+G      G  +HC  +  G   + +  N L++MY  CG +  A  V 
Sbjct: 107 DHLTFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVF 166

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
             M ++ VV+WN+++AG  +NG  + AL+V  EM +  +  D  T+ S+LP+       N
Sbjct: 167 GAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLN 226

Query: 249 V----------------LSVKEMFLKL------------------DNKNLVSWNVMIAVY 274
                            ++VK   + +                   +K++VSW  MI  Y
Sbjct: 227 TGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAY 286

Query: 275 ANNSMPAEAVDLYLQMEVHGIE-PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
             N    EA+ L  QM + G   PN +++  +L AC  + +    +  H    R  L+ +
Sbjct: 287 VLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSD 346

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
           + +E AL+D YA+CG +   R   ++   +   +W + +S Y +SG+   A+ LF +M+ 
Sbjct: 347 IAVETALIDAYARCGKMKLMRLTLERGSWR-AETWNAALSGYTVSGREKKAIELFKRMIA 405

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
             + PDS    S+L A + +  L+EG+     +      +   E    L+D+  +AG ++
Sbjct: 406 ESVRPDSATMASILPAYAESADLKEGKNIHCFLL-TLGFLRSTEIATGLIDVYSKAGDLD 464

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
            A+ L + +P E +   W +++A   ++ +    IL  D +
Sbjct: 465 AAWALFQWLP-EKDVVAWTTIIAGYGIHGHARTAILLYDRM 504



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 4/216 (1%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           P  K  K  HA + I   L S+ ++   L+  Y  CG+M   R   +  + +   + N  
Sbjct: 326 PSGKHAKCTHA-LCIRLGLKSDIAVETALIDAYARCGKMKLMRLTLERGSWRAETW-NAA 383

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           +  Y  +     A+ ++K M      PD  T   +L A + S  L  G  IHC ++ +G 
Sbjct: 384 LSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGF 443

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             +     GL+ +Y K G L  A  +   +P KDVV W +++AGY  +G    A+ +   
Sbjct: 444 LRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYGIHGHARTAILLYDR 503

Query: 222 MESLRIKPDADTMASLLPSVTNTS--PENVLSVKEM 255
           M     KP+  T+A+LL + ++     E +   K+M
Sbjct: 504 MVESGGKPNTVTIATLLYACSHAGMIDEGIKVFKDM 539


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 171/540 (31%), Positives = 285/540 (52%), Gaps = 47/540 (8%)

Query: 56  INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDAL 115
           I+  L ++  +   L+  Y  C  + D  H+F  +  +++V +N ++  Y ++ +Y+ A+
Sbjct: 37  IHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAV 96

Query: 116 -HVYK-NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN--------- 164
            H+    M +H   P+  T   +L   +   +L  G  +H   ++  L  N         
Sbjct: 97  AHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTD 156

Query: 165 -LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE--------- 214
            +  G  L+ MY KCG L  ARRV + MP+++ VTW++++ G+    R  +         
Sbjct: 157 GVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAML 216

Query: 215 --------------ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL---------- 250
                         AL  C  ++ LR+      + +      + +  N L          
Sbjct: 217 AQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLI 276

Query: 251 -SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                +F ++  K+ VS++ +++ Y  N    EA  ++ +M+   +EP+A ++ S++PAC
Sbjct: 277 DQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC 336

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L+AL  GR  H  V  + L     + NAL+DMYAKCG +  +R VF+ M  +D+VSW 
Sbjct: 337 SHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWN 396

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           +MI+ YG+ G G +A ALF +M   G  PD + F+ +LSACSH+GL+ EG+++F +M   
Sbjct: 397 TMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHG 456

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y L PR+EH+ C+VDLL R G ++EAY+ I+ MP+  + R+W +L+ AC +Y N+D+G  
Sbjct: 457 YGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKK 516

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            +  I  L P  +G +VLLSNIY+ AGR+ +   VR     +G KK PG S +E+N  + 
Sbjct: 517 VSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLH 576



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 190/405 (46%), Gaps = 52/405 (12%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M  H   P+ YT+P  LKACS       G  IH   +  GL  +LF    L+ MY KC C
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD--VCREMESLRIKPDADTMASLL 238
           L +A  +   MP++D+V WN+M+AGYA +G +  A+   +  +M+  R++P+A T+ +LL
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 239 PSVTNTSP-------------------------------------------ENVLSVKEM 255
           P +                                                 ++L  + +
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG---IEPNAISVASVLPACGDL 312
           F  +  +N V+W+ +I  +   S   +A  L+  M   G   + P   S+AS L AC  L
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASL 238

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
             L +G ++H  + +  +  +L   N+L+ MYAK G + +A  +FD+M  +D VS+++++
Sbjct: 239 DHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALV 298

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           S Y  +G+  +A  +F KM    + PD+   VS++ ACSH   L+ GR     +  +  L
Sbjct: 299 SGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GL 357

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
                    L+D+  + G+++ +  +   MP   +   W +++A 
Sbjct: 358 ASETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAG 401



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 150/315 (47%), Gaps = 14/315 (4%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LHA ++    +H++ + G  L+  Y   G +     +FDE+  K+ V ++ L+  YV 
Sbjct: 245 EQLHA-LLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQ 303

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    +A  V+K M     +PD  T   ++ ACS   +L  G   H SV+  GL      
Sbjct: 304 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI 363

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY KCG +  +R+V N MPS+D+V+WN+M+AGY  +G   EA  +  EM +L  
Sbjct: 364 CNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGF 423

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLVSWNVMIAVYANNSMPAE 282
            PD  T   LL + +++    V+  K  F  + +       +  +  M+ + +      E
Sbjct: 424 PPDGVTFICLLSACSHSGL--VIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDE 481

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV- 341
           A +    M    +  +     ++L AC     + LG+K+ R ++  +L P       L+ 
Sbjct: 482 AYEFIQSMP---LRADVRVWVALLGACRVYKNIDLGKKVSRMIQ--ELGPEGTGNFVLLS 536

Query: 342 DMYAKCGSLTEARTV 356
           ++Y+  G   EA  V
Sbjct: 537 NIYSAAGRFDEAAEV 551



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 96/211 (45%), Gaps = 12/211 (5%)

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M  H + PN  +    L AC  L+    GR IHR+     LQ +L +  AL+DMY KC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA--LFSKMLMSGLCPDSIAFVSVL 407
           L +A  +F  M  +D+V+W +M++ Y   G  + AVA  L  +M M  L P++   V++L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 408 SACSHAGLLEEGR----YYFKI-----MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
              +  G L +G     Y  +         + KL   +     L+D+  + G +  A  +
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
              MP   NE  W +L+    L S M    L
Sbjct: 181 FDAMPAR-NEVTWSALIGGFVLCSRMTQAFL 210


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 176/583 (30%), Positives = 296/583 (50%), Gaps = 68/583 (11%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N+++  Y     +   +A+ + +Q    N      L+ +Y     + +   VF  +  ++
Sbjct: 48  NNLVSAYAKFDRIT--YARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRD 105

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           +V +N LI +Y        ++  Y  M  +G F+ +      +L   S    + +GLQ+H
Sbjct: 106 MVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVH 165

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV---------------- 197
             VVK G    +F G+ LV MY K G +  AR+  ++MP K+VV                
Sbjct: 166 GHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIE 225

Query: 198 ---------------TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS-- 240
                          +W +M+AG+ QNG   EA+D+ REM    ++ D  T  S+L +  
Sbjct: 226 DSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACG 285

Query: 241 ---------------VTNTSPENVL----------------SVKEMFLKLDNKNLVSWNV 269
                          +     +N+                 S + +F K++ KN+VSW  
Sbjct: 286 GVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTA 345

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           M+  Y  N    EAV ++  M+ +GIEP+  ++ SV+ +C +L++L  G + H       
Sbjct: 346 MLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSG 405

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           L   + + NALV +Y KCGS+ ++  +F +M   D VSWT+++S Y   G+  + + LF 
Sbjct: 406 LISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFE 465

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
            ML  G  PD + F+ VLSACS AGL+++G   F+ M ++++++P  +H+ C++DL  RA
Sbjct: 466 SMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRA 525

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G++EEA   I +MP  P+   W SL+++C  + NM+IG  AA+ +  L P+ +  Y+LLS
Sbjct: 526 GRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLS 585

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIA 551
           +IYA  G+W +V  +RK M  KG++K PG S ++  +QV I +
Sbjct: 586 SIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFS 628


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 163/468 (34%), Positives = 265/468 (56%), Gaps = 50/468 (10%)

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMY--------------GK 177
           + P  LK+C+      +G  +H   ++ G   + F  N L+ +Y              G 
Sbjct: 60  SLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGS 119

Query: 178 CGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASL 237
              L+  R+V ++MP KDVV+WN++V G A++GR  EAL + REM     KPD+ T++S+
Sbjct: 120 AVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSV 179

Query: 238 LP-----------------SVTNTSPENVL-----------------SVKEMFLKLDNKN 263
           LP                 +  N   ++V                  SVK +F  L  ++
Sbjct: 180 LPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVK-VFDNLPVRD 238

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR 323
            + WN M+A  A N    EA+ L+ +M   GI+P  ++ +S++PACG+L++LLLG+++H 
Sbjct: 239 AILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHA 298

Query: 324 YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383
           YV R     N+ + ++L+DMY KCG+++ AR +FD+++  D+VSWT+MI  + + G   +
Sbjct: 299 YVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPARE 358

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV 443
           A+ LF +M +  L P+ I F++VL+ACSHAGL+++G  YF  M++ Y +VP +EH A L 
Sbjct: 359 ALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALA 418

Query: 444 DLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503
           D LGR GK+EEAY+ I  M ++P   +W +L+ AC ++ N  +    A  IF L P   G
Sbjct: 419 DTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMG 478

Query: 504 YYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            +++LSN Y+ +GRW +   +RK M  KG++K P  S +E+ ++  + 
Sbjct: 479 SHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVF 526



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 153/326 (46%), Gaps = 35/326 (10%)

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
           R VFDE+  K+VV +N L+     +  + +AL + + M   G  PD +T   VL   +  
Sbjct: 127 RKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEG 186

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
             +  G+++H    + G   ++F G+ L+ MY  C     + +V +++P +D + WNSM+
Sbjct: 187 ADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSML 246

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP----------------- 246
           AG AQNG  DEAL + R M    IKP   T +SL+P+  N +                  
Sbjct: 247 AGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFD 306

Query: 247 ----------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
                            NV   + +F ++ + ++VSW  MI  +A +    EA+ L+ +M
Sbjct: 307 GNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRM 366

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRK-IHRYVERKKLQPNLRLENALVDMYAKCGS 349
           E+  ++PN I+  +VL AC     +  G K  +   +   + P+L    AL D   + G 
Sbjct: 367 ELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGK 426

Query: 350 LTEARTVFDQMRCQDVVS-WTSMISA 374
           L EA      M+ +   S W++++ A
Sbjct: 427 LEEAYNFISGMKIKPTASVWSTLLRA 452



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 153/329 (46%), Gaps = 10/329 (3%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           I  +  D++   +LH     N   H +  +G  L+  Y  C +   +  VFD +  ++ +
Sbjct: 182 IFAEGADVRRGMELHGFATRNG-FHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAI 240

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +N ++     N    +AL +++ M   G  P   T+  ++ AC    SLL+G Q+H  V
Sbjct: 241 LWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYV 300

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           ++ G D N+F  + L+ MY KCG +  ARR+ + + S D+V+W +M+ G+A +G   EAL
Sbjct: 301 IRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREAL 360

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
            +   ME   +KP+  T  ++L + ++    +    K      D+  +V      A  A+
Sbjct: 361 VLFDRMELGNLKPNHITFLAVLTACSHAGLVDK-GWKYFNSMSDHYGIVPSLEHHAALAD 419

Query: 277 N-SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV---ERKKLQP 332
               P +  + Y  +    I+P A   +++L AC      +L  ++ + +   E + +  
Sbjct: 420 TLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGS 479

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMR 361
           ++ L N     Y+  G   EA  +   MR
Sbjct: 480 HIILSNT----YSSSGRWNEAAHLRKSMR 504



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 97/238 (40%), Gaps = 20/238 (8%)

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP----ACGDLSALLLGRKI 321
           SW   I V A+      A+ L+L+M          SV + LP    +C  L    LG  +
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80

Query: 322 HRYVERKKLQPNLRLENALVDMYAKC-----------GS---LTEARTVFDQMRCQDVVS 367
           H    R     +    NAL+++Y K            GS   L   R VFD+M  +DVVS
Sbjct: 81  HALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVS 140

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W +++     SG+  +A+ L  +M   G  PDS    SVL   +    +  G       T
Sbjct: 141 WNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFAT 200

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
                   +   + L+D+     + + +  +   +P+  +  +W S++A C    ++D
Sbjct: 201 RN-GFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DAILWNSMLAGCAQNGSVD 256


>gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa]
 gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa]
          Length = 749

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 165/495 (33%), Positives = 275/495 (55%), Gaps = 36/495 (7%)

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS-VHGFDPDCYTYPCVLKACS 141
            R +FDE+  K+V+ ++V+I  Y+        L +++ M  V G +PD      VLKAC+
Sbjct: 202 ARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACA 261

Query: 142 GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNS 201
            S  +  G  +H  V+  G D +LF  N L+ MY KC     A +V N++  ++ V+WNS
Sbjct: 262 SSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNS 321

Query: 202 MVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP-----------------SVTNT 244
           M++G+  N  + EA  +   M   R++ D  T+ ++L                   +   
Sbjct: 322 MLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRG 381

Query: 245 SPENVLSVK----------------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
           S  N L +                 E+F ++  +++VSW+ MI+ +A+   P EA+ +Y 
Sbjct: 382 SEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQ 441

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           +M+   ++PN I++ ++L AC   + L   +  H    R+     + +  A+VDMY+KCG
Sbjct: 442 EMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCG 501

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
            +  +R  FDQ+  +++V+W++MI+AYGM+G  ++A+ALF++M   GL P+ +  +SVL+
Sbjct: 502 EILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLA 561

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP--MEP 466
           ACSH GL+EEG   FK M ++  L P  EH++C+VD+LGRAGK++ A ++IK MP  ++ 
Sbjct: 562 ACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPHNLKN 621

Query: 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526
              IWGSL++AC  Y   ++G  A   +  L P+ S  Y++ S++YA  G W D  R+R 
Sbjct: 622 GASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVASSMYAADGLWDDAARIRV 681

Query: 527 FMNSKGIKKMPGASV 541
               KG+K + G S+
Sbjct: 682 LAKEKGVKVVAGYSL 696



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 219/465 (47%), Gaps = 39/465 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT-NKNVVFFNVLIRSYV 106
           K LHA  +I Q   S  SIG  +M  Y  CG       VF+ +  +++ V +N+LI  ++
Sbjct: 67  KSLHA-CLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHL 125

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
           +N      L  + N  V GF+P+  T   V++AC    +   GL +H  ++K G      
Sbjct: 126 DNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISS 185

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL- 225
             N L++MY     ++ AR + ++M  KDV+ W+ M+ GY Q       L + R+M  + 
Sbjct: 186 VQNSLLSMYVDAD-MECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVP 244

Query: 226 RIKPDADTMASLLPSVTNTSP----------------------ENVL-----------SV 252
            I+PD   M S+L +  ++                        EN L           S 
Sbjct: 245 GIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSA 304

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
            ++F ++  +N VSWN M++ +  N   +EA  L   M    +E + +++ ++L  C   
Sbjct: 305 FKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYF 364

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
                 + IH  + R+  + N  + +AL+D YAKC  +  A  VF +MR +DVVSW++MI
Sbjct: 365 VHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMI 424

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           S +   G+  +A+A++ +M    + P+ I  +++L ACS    L+  ++   +   Q   
Sbjct: 425 SGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQ-GF 483

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
              +     +VD+  + G++  +     Q+ ++ N   W +++AA
Sbjct: 484 ASEVTVGTAVVDMYSKCGEILASRRAFDQLALK-NIVTWSAMIAA 527



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 148/318 (46%), Gaps = 35/318 (11%)

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D   +P +LKA S   S   G  +H  ++K G D     GN ++  Y +CG    A  V 
Sbjct: 47  DVSVFPPILKAWS-FLSHRHGKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVF 105

Query: 189 NDM-PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS------- 240
           N M  S+D V+WN ++ G+  NG     L           +P+  TM  ++ +       
Sbjct: 106 NSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTK 165

Query: 241 ----------------VTNTSPENVLSV---------KEMFLKLDNKNLVSWNVMIAVYA 275
                             ++   ++LS+         +E+F ++  K++++W+VMI  Y 
Sbjct: 166 HDGLILHGYLIKSGFWAISSVQNSLLSMYVDADMECARELFDEMHEKDVIAWSVMIGGYL 225

Query: 276 NNSMPAEAVDLYLQME-VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
               P   + ++ +M  V GIEP+ + + SVL AC     +  GR +H  V  +    +L
Sbjct: 226 QWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDL 285

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            +EN+L+DMY+KC     A  VF+++  ++ VSW SM+S + ++    +A +L S M   
Sbjct: 286 FVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKE 345

Query: 395 GLCPDSIAFVSVLSACSH 412
            +  D +  V++L  C +
Sbjct: 346 RVETDEVTLVNILQICKY 363



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +H  ++I +   +N  +   L+  Y  C  +     VF  +  ++VV ++ +I  + +
Sbjct: 371 KSIHC-VMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAH 429

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                +A+ VY+ M      P+  T   +L+ACS +  L      H   ++ G    +  
Sbjct: 430 CGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTV 489

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           G  +V MY KCG +  +RR  + +  K++VTW++M+A Y  NG   EAL +  EM+   +
Sbjct: 490 GTAVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGL 549

Query: 228 KPDADTMASLLPSVTNTS--PENVLSVKEMFLKLD-NKNLVSWNVMIAVYANNSMPAEAV 284
           KP+  T  S+L + ++     E +   K M  +L        ++ M+ +         A+
Sbjct: 550 KPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAI 609

Query: 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK-IHRYVERKKLQPN 333
           ++   M  H ++  A    S+L AC       LG++ I R +E   L+P+
Sbjct: 610 EVIKAMP-HNLKNGASIWGSLLSACRSYGLTELGKEAISRVLE---LEPS 655



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 6/225 (2%)

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
           +++ VSWN++I  + +N      +  +    V G EPN  ++  V+ AC  L     G  
Sbjct: 111 SRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLI 170

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
           +H Y+ +        ++N+L+ MY     +  AR +FD+M  +DV++W+ MI  Y    +
Sbjct: 171 LHGYLIKSGFWAISSVQNSLLSMYVD-ADMECARELFDEMHEKDVIAWSVMIGGYLQWEE 229

Query: 381 GYDAVALFSKM-LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ-YKLVPRIEH 438
               + +F KM L+ G+ PD +  VSVL AC+ +  +  GR    ++  + +     +E+
Sbjct: 230 PQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVEN 289

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
              L+D+  +      A+ +  ++  + N   W S+++   L  N
Sbjct: 290 --SLIDMYSKCKDAGSAFKVFNEIS-QRNNVSWNSMLSGFVLNEN 331



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 6/167 (3%)

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +    L +W + I   + N    E V  Y +++  GI+   +SV   +       +   G
Sbjct: 7   VSGSKLPNWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRHG 66

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM-RCQDVVSWTSMISAYGM 377
           + +H  + ++       + N+++  Y +CG    A  VF+ M R +D VSW  +I  +  
Sbjct: 67  KSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLD 126

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC-----SHAGLLEEG 419
           +G     +  F+   ++G  P+    V V+ AC      H GL+  G
Sbjct: 127 NGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHG 173


>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
          Length = 897

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 169/514 (32%), Positives = 275/514 (53%), Gaps = 37/514 (7%)

Query: 64  PSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV 123
           PS+   L   Y  C    D R +F E+  K++V +  LI +Y        A+ ++  M  
Sbjct: 250 PSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEE 309

Query: 124 HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183
            G  PD     C+L        +  G   H ++V+     ++  GN L++MY KC  +  
Sbjct: 310 SGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDI 369

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME-------------------- 223
           A  V   +  +D  +W+SMV  Y + G   + L++ REM+                    
Sbjct: 370 AATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISS 429

Query: 224 -----SLRIKPDADTMASLLPSVTNTSPENVL-----------SVKEMFLKLDNKNLVSW 267
                 LR+   A   +    +  N+S  N L             +++F  +  K++V+W
Sbjct: 430 CSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTW 489

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
           + +I+ Y++     +A+ LY QM   G++PN+ ++ SV+ +C +L+AL  G  IH +V+ 
Sbjct: 490 SALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKD 549

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
             L+ +L +  ALVDMY KCG L  AR +FD M  +DVV+W  MIS YGM G+   A+ L
Sbjct: 550 VGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKL 609

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           FS M    + P+S+ F+++LSAC HAGL+++GR  F  M E+Y L P ++H+AC+VDLLG
Sbjct: 610 FSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRM-EEYSLEPNLKHYACMVDLLG 668

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507
           ++G ++EA D++  MP+EP+  IWG+L+ AC ++ N ++G+  A   F   P   GYY+L
Sbjct: 669 KSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYIL 728

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           +SN Y  A +W +++++R  M + G++K  G S 
Sbjct: 729 MSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWST 762



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 220/484 (45%), Gaps = 52/484 (10%)

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDAL----HVYKN 120
           ++   L+  Y  CG + D   +FDE+  ++VV +  +I   V N    + L     + ++
Sbjct: 146 AVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRS 205

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
               G  P+  T    L+AC     L VG  +H   VK G+ +     + L +MY KC  
Sbjct: 206 AGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDS 265

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
            ++AR +  ++P KD+V+W S++  Y + G  ++A+++   ME   ++PD   ++ LL  
Sbjct: 266 TEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAG 325

Query: 241 VTNTSP---------------------------------ENVLSVKEMFLKLDNKNLVSW 267
           + N +                                  + V     +F  L  ++  SW
Sbjct: 326 LGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSW 385

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHG---IEPNAISVASVLPACGDLSALLLGRKIHRY 324
           + M+  Y    +  + ++LY +M+       E +  S+ S++ +C  L  L LG+  H Y
Sbjct: 386 SSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCY 445

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
             +     N  + NAL+ MY +CG+   AR +F  ++ +DVV+W+++IS+Y   G   DA
Sbjct: 446 SIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDA 505

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           + L+ +ML  G+ P+S   VSV+S+C++   LE G        +   L   +     LVD
Sbjct: 506 LLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHS-HVKDVGLECDLSICTALVD 564

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIW----------GSLVAACCLYSNMDIGILAADHI 494
           +  + G++  A  +   M +E +   W          G  + A  L+S M+ G +  + +
Sbjct: 565 MYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSL 623

Query: 495 FHLA 498
             LA
Sbjct: 624 TFLA 627



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 125/251 (49%), Gaps = 9/251 (3%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           N S+   L+  YG CG     R +F  +  K+VV ++ LI SY +     DAL +Y  M 
Sbjct: 454 NSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQML 513

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
             G  P+  T   V+ +C+   +L  G  IH  V  VGL+ +L     LV MY KCG L 
Sbjct: 514 TEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLG 573

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
            AR++ + M  +DVVTWN M++GY  +G   +AL +   ME   +KP++ T  ++L +  
Sbjct: 574 IARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACC 633

Query: 243 NTSPENVLSVKEMFLKLD----NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
           +     V   +E+F +++      NL  +  M+ +   +    EA D+   M    IEP+
Sbjct: 634 HAGL--VDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMP---IEPD 688

Query: 299 AISVASVLPAC 309
                ++L AC
Sbjct: 689 GGIWGTLLGAC 699



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 17/224 (7%)

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           WN ++      S  A  +  + +M   G  P+  +   V  A  +L AL +G  +H Y  
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 327 RKKL---QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383
           R  L     ++ + ++LV MYA+CGS+ +A  +FD+M  +DVV+WT++IS    +GQ  +
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGE 194

Query: 384 AVALFSKMLMS----GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH- 438
            ++   +M+ S    G  P+S    S L AC   G L  G          + +   + H 
Sbjct: 195 GLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVG-----TCLHGFGVKAGVGHC 249

Query: 439 ---FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
               + L  +  +    E+A  L  ++P E +   W SL+ A C
Sbjct: 250 PSVVSSLFSMYTKCDSTEDARILFPELP-EKDLVSWTSLIGAYC 292



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 111/249 (44%), Gaps = 6/249 (2%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
           L  + SI   L+  Y  CGQ+   R +FD +  ++VV +NV+I  Y  +     AL ++ 
Sbjct: 552 LECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFS 611

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M      P+  T+  +L AC  +  +  G ++   + +  L+ NL +   +V + GK G
Sbjct: 612 MMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSG 671

Query: 180 CLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238
            L+EA  V++ MP   D   W +++     +  F+  L V +  ++    P+ D    L+
Sbjct: 672 HLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAK--KAFASDPENDGYYILM 729

Query: 239 PSVTNTSPE--NVLSVKEMFLKLDNKNLVSWNVM-IAVYANNSMPAEAVDLYLQMEVHGI 295
            +   ++ +   +  +++M      +  + W+ + I  +  N +      L+ Q E    
Sbjct: 730 SNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDICGFMKNQLTQWQHSLFEQSEFRSS 789

Query: 296 EPNAISVAS 304
           E   IS  S
Sbjct: 790 EDMCISFVS 798


>gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa]
          Length = 749

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 165/495 (33%), Positives = 275/495 (55%), Gaps = 36/495 (7%)

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS-VHGFDPDCYTYPCVLKACS 141
            R +FDE+  K+V+ ++V+I  Y+        L +++ M  V G +PD      VLKAC+
Sbjct: 202 ARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACA 261

Query: 142 GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNS 201
            S  +  G  +H  V+  G D +LF  N L+ MY KC     A +V N++  ++ V+WNS
Sbjct: 262 SSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNS 321

Query: 202 MVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP-----------------SVTNT 244
           M++G+  N  + EA  +   M   R++ D  T+ ++L                   +   
Sbjct: 322 MLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRG 381

Query: 245 SPENVLSVK----------------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
           S  N L +                 E+F ++  +++VSW+ MI+ +A+   P EA+ +Y 
Sbjct: 382 SEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQ 441

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           +M+   ++PN I++ ++L AC   + L   +  H    R+     + +  A+VDMY+KCG
Sbjct: 442 EMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCG 501

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
            +  +R  FDQ+  +++V+W++MI+AYGM+G  ++A+ALF++M   GL P+ +  +SVL+
Sbjct: 502 EILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLA 561

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP--MEP 466
           ACSH GL+EEG   FK M ++  L P  EH++C+VD+LGRAGK++ A ++IK MP  ++ 
Sbjct: 562 ACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPDNLKN 621

Query: 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526
              IWGSL++AC  Y   ++G  A   +  L P+ S  Y++ S++YA  G W D  R+R 
Sbjct: 622 GASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVASSMYAADGLWDDAARIRV 681

Query: 527 FMNSKGIKKMPGASV 541
               KG+K + G S+
Sbjct: 682 LAKEKGVKVVAGYSL 696



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 219/465 (47%), Gaps = 39/465 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT-NKNVVFFNVLIRSYV 106
           K LHA  +I Q   S  SIG  +M  Y  CG       VF+ +  +++ V +N+LI  ++
Sbjct: 67  KSLHA-CLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHL 125

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
           +N      L  + N  V GF+P+  T   V++AC    +   GL +H  ++K G      
Sbjct: 126 DNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISS 185

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL- 225
             N L++MY     ++ AR + ++M  KDV+ W+ M+ GY Q       L + R+M  + 
Sbjct: 186 VQNSLLSMYVDAD-MECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVP 244

Query: 226 RIKPDADTMASLLPSVTNTSP----------------------ENVL-----------SV 252
            I+PD   M S+L +  ++                        EN L           S 
Sbjct: 245 GIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSA 304

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
            ++F ++  +N VSWN M++ +  N   +EA  L   M    +E + +++ ++L  C   
Sbjct: 305 FKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYF 364

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
                 + IH  + R+  + N  + +AL+D YAKC  +  A  VF +MR +DVVSW++MI
Sbjct: 365 VHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMI 424

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
           S +   G+  +A+A++ +M    + P+ I  +++L ACS    L+  ++   +   Q   
Sbjct: 425 SGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQ-GF 483

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
              +     +VD+  + G++  +     Q+ ++ N   W +++AA
Sbjct: 484 ASEVTVGTAVVDMYSKCGEILASRRAFDQLALK-NIVTWSAMIAA 527



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 148/318 (46%), Gaps = 35/318 (11%)

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D   +P +LKA S   S   G  +H  ++K G D     GN ++  Y +CG    A  V 
Sbjct: 47  DVSVFPPILKAWS-FLSHRHGKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVF 105

Query: 189 NDM-PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS------- 240
           N M  S+D V+WN ++ G+  NG     L           +P+  TM  ++ +       
Sbjct: 106 NSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTK 165

Query: 241 ----------------VTNTSPENVLSV---------KEMFLKLDNKNLVSWNVMIAVYA 275
                             ++   ++LS+         +E+F ++  K++++W+VMI  Y 
Sbjct: 166 HDGLILHGYLIKSGFWAISSVQNSLLSMYVDADMECARELFDEMHEKDVIAWSVMIGGYL 225

Query: 276 NNSMPAEAVDLYLQME-VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
               P   + ++ +M  V GIEP+ + + SVL AC     +  GR +H  V  +    +L
Sbjct: 226 QWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDL 285

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            +EN+L+DMY+KC     A  VF+++  ++ VSW SM+S + ++    +A +L S M   
Sbjct: 286 FVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKE 345

Query: 395 GLCPDSIAFVSVLSACSH 412
            +  D +  V++L  C +
Sbjct: 346 RVETDEVTLVNILQICKY 363



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 97/196 (49%), Gaps = 1/196 (0%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +H  ++I +   +N  +   L+  Y  C  +     VF  +  ++VV ++ +I  + +
Sbjct: 371 KSIHC-VMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAH 429

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                +A+ VY+ M      P+  T   +L+ACS +  L      H   ++ G    +  
Sbjct: 430 CGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTV 489

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           G  +V MY KCG +  +RR  + +  K++VTW++M+A Y  NG   EAL +  EM+   +
Sbjct: 490 GTAVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGL 549

Query: 228 KPDADTMASLLPSVTN 243
           KP+  T  S+L + ++
Sbjct: 550 KPNPVTTLSVLAACSH 565



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 6/225 (2%)

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
           +++ VSWN++I  + +N      +  +    V G EPN  ++  V+ AC  L     G  
Sbjct: 111 SRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLI 170

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
           +H Y+ +        ++N+L+ MY     +  AR +FD+M  +DV++W+ MI  Y    +
Sbjct: 171 LHGYLIKSGFWAISSVQNSLLSMYVD-ADMECARELFDEMHEKDVIAWSVMIGGYLQWEE 229

Query: 381 GYDAVALFSKM-LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ-YKLVPRIEH 438
               + +F KM L+ G+ PD +  VSVL AC+ +  +  GR    ++  + +     +E+
Sbjct: 230 PQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVEN 289

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
              L+D+  +      A+ +  ++  + N   W S+++   L  N
Sbjct: 290 --SLIDMYSKCKDAGSAFKVFNEIS-QRNNVSWNSMLSGFVLNEN 331



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 6/167 (3%)

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +    L +W + I   + N    E V  Y +++  GI+   +SV   +       +   G
Sbjct: 7   VSGSKLPNWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRHG 66

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM-RCQDVVSWTSMISAYGM 377
           + +H  + ++       + N+++  Y +CG    A  VF+ M R +D VSW  +I  +  
Sbjct: 67  KSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLD 126

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC-----SHAGLLEEG 419
           +G     +  F+   ++G  P+    V V+ AC      H GL+  G
Sbjct: 127 NGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHG 173


>gi|449450916|ref|XP_004143208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 176/524 (33%), Positives = 280/524 (53%), Gaps = 41/524 (7%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           II      NP I   L+  YG C  + D   VFDE++  +VV +N L+  Y+       A
Sbjct: 94  IIKLGFSLNPYIFTALVDMYGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMA 153

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
           + ++  M   G +P  ++    L  CS      +G Q+H   +K+    N+  G GL+ M
Sbjct: 154 VSLFLEMLKKGIEPTPFSLSGGLVGCSQLQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDM 213

Query: 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
           Y KC  L+++RRV + M +K+V TW SM++GYA+N    EA+ + REM  L +KP+  T 
Sbjct: 214 YSKCCNLQDSRRVFDIMLNKNVFTWTSMISGYARNQLPHEAMILMREMLHLNLKPNGMTY 273

Query: 235 ASLLPSVTNTSPENVLSVKEMFLKLDNK-------------------------------- 262
            SLL S +   P +    K++  ++  +                                
Sbjct: 274 NSLLSSFS--CPRHFDKCKQIHCRIITEGYESNNYIAVTLVTAYSECCGSLEDYRKVCSN 331

Query: 263 ----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
               + +SWN +IA + N  +  EA++ ++QM     + +  +  S+  A G  SAL  G
Sbjct: 332 IRMSDQISWNAVIAGFTNLGIGEEALECFIQMRREKFDVDFFTFTSIFKAIGMTSALEEG 391

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           ++IH  V +     NL ++N LV MYA+ G++ +++ VF  M   D++SW S++S     
Sbjct: 392 KQIHGLVYKTGYTLNLSVQNGLVSMYARSGAIRDSKMVFSMMNEHDLISWNSLLSGCAYH 451

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV--PRI 436
           G G +A+ LF KM  + + PD+ +F++VL+ACSH GLL++G  YFK+M    +LV  P++
Sbjct: 452 GCGEEAIDLFEKMRRTCIKPDNTSFLAVLTACSHVGLLDKGLEYFKLMRNS-ELVEPPKL 510

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           EH+A LVDL GRAGK+ EA   I+ +P+EP   I+ +L++AC ++ N DI I  A  +  
Sbjct: 511 EHYATLVDLFGRAGKLYEAEAFIESIPIEPGISIYKALLSACLIHGNKDIAIRTAKKLLE 570

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           L P     Y++LSN   + G W D   +R+ M+++G+KK PG S
Sbjct: 571 LYPYDPATYIMLSNALGRDGYWDDAASIRRLMSNRGVKKEPGFS 614



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 177/390 (45%), Gaps = 38/390 (9%)

Query: 124 HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183
           HG  P        +  C+ S  L  G+Q+H +++K+G   N +    LV MYGKC  + +
Sbjct: 62  HGSPPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISD 121

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           A +V ++M    VVTWNS+V GY Q G    A+ +  EM    I+P   +++  L   + 
Sbjct: 122 AHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQ 181

Query: 244 TSPENVLS-VKEMFLKLD--------------------------------NKNLVSWNVM 270
               ++ S +  M LKL                                 NKN+ +W  M
Sbjct: 182 LQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSM 241

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
           I+ YA N +P EA+ L  +M    ++PN ++  S+L +          ++IH  +  +  
Sbjct: 242 ISGYARNQLPHEAMILMREMLHLNLKPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEGY 301

Query: 331 QPNLRLENALVDMYAK-CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           + N  +   LV  Y++ CGSL + R V   +R  D +SW ++I+ +   G G +A+  F 
Sbjct: 302 ESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFI 361

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ-YKLVPRIEHFACLVDLLGR 448
           +M       D   F S+  A      LEEG+    ++ +  Y L   +++   LV +  R
Sbjct: 362 QMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQN--GLVSMYAR 419

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           +G + ++  ++  M  E +   W SL++ C
Sbjct: 420 SGAIRDS-KMVFSMMNEHDLISWNSLLSGC 448



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 106/232 (45%), Gaps = 8/232 (3%)

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
           +   +Q+  HG  P    +   +  C   + L  G ++H  + +     N  +  ALVDM
Sbjct: 53  IQFLVQLLRHGSPPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDM 112

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
           Y KC S+++A  VFD+M C  VV+W S+++ Y  +G    AV+LF +ML  G+ P   + 
Sbjct: 113 YGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSL 172

Query: 404 VSVLSACSHAGLLEEGRYYFKI--MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
              L  CS    L++G    ++  M+ + +    +     L+D+  +   ++++  +   
Sbjct: 173 SGGLVGCSQ---LQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDI 229

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH--LAPNQSGYYVLLSNI 511
           M +  N   W S+++           ++    + H  L PN   Y  LLS+ 
Sbjct: 230 M-LNKNVFTWTSMISGYARNQLPHEAMILMREMLHLNLKPNGMTYNSLLSSF 280


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 169/504 (33%), Positives = 270/504 (53%), Gaps = 44/504 (8%)

Query: 50  LHAQII-INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK---NVVFFNVLIRSY 105
           +HA ++     L+++ +  L LM  Y A G     R + D    +     V +N LI  +
Sbjct: 41  VHAHVVKFGMELNAHVASSLVLM--YAARGDGAVARTLLDAWPARGGDTPVVWNALISGH 98

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
             +  +  +   + +M   G  P   TY  VL AC     + +G+Q+H  VV  G+  +L
Sbjct: 99  RRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDL 158

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
             GN L+ MY +C  +  A  +   M  ++ V+W S+++G+ + G+ D+A          
Sbjct: 159 KVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQA---------- 208

Query: 226 RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285
                                      + +F  +  ++ VSW  MI  Y       EA++
Sbjct: 209 ---------------------------RTLFDCMPERDTVSWTAMIDGYVQAGQFREALE 241

Query: 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
           ++ +M+   +  +  ++ SV+ AC  L AL  G     Y+ R  ++ +  + NALVDMY+
Sbjct: 242 MFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYS 301

Query: 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
           KCGS+ +A  VF +M  +D  +WT++I    ++G G +A+ +F +ML     PD + F+ 
Sbjct: 302 KCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIG 361

Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME 465
           VL+AC+HAGL+++GR +F  MT  Y + P + HF CL+DLLGRAGK++EA + I  MPM 
Sbjct: 362 VLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMR 421

Query: 466 PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVR 525
           PN  IWG+L+AAC ++ N +IG LAA+H+  L       Y+LLSN+YAK+ RW DV+R+R
Sbjct: 422 PNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAKSNRWEDVRRLR 481

Query: 526 KFMNSKGIKKMPGAS-VEMNDQVQ 548
           + +  KGIKK PG S +EMN  + 
Sbjct: 482 QVIMEKGIKKEPGCSLIEMNGTIH 505


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 174/543 (32%), Positives = 291/543 (53%), Gaps = 53/543 (9%)

Query: 56  INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDAL 115
           I+  L ++  +   L+  Y  C  + D  H+F  +  +++V +N ++  Y ++ +Y+ A+
Sbjct: 152 IHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAV 211

Query: 116 -HVYK-NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN--------- 164
            H+    M +H   P+  T   +L   +   +L  G  +H   ++  L  N         
Sbjct: 212 AHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTD 271

Query: 165 -LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE--------- 214
            +  G  L+ MY KCG L  ARRV + MP+++ VTW++++ G+    R  +         
Sbjct: 272 GVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAML 331

Query: 215 --------------ALDVCREMESLRIKPDADTMASLLPS----VTNTSPENVLSVK--- 253
                         AL  C  ++ LR+    + + +LL         T+  ++LS+    
Sbjct: 332 AQGLCFLSPTSIASALRACASLDHLRM---GEQLHALLAKSGVHADLTAGNSLLSMYAKA 388

Query: 254 -------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
                   +F ++  K+ VS++ +++ Y  N    EA  ++ +M+   +EP+A ++ S++
Sbjct: 389 GLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLI 448

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
           PAC  L+AL  GR  H  V  + L     + NAL+DMYAKCG +  +R VF+ M  +D+V
Sbjct: 449 PACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIV 508

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           SW +MI+ YG+ G G +A ALF +M   G  PD + F+ +LSACSH+GL+ EG+++F +M
Sbjct: 509 SWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVM 568

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
              Y L PR+EH+ C+VDLL R G ++EAY+ I+ MP+  + R+W +L+ AC +Y N+D+
Sbjct: 569 GHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDL 628

Query: 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMND 545
           G   +  I  L P  +G +VLLSNIY+ AGR+ +   VR     +G KK PG S +E+N 
Sbjct: 629 GKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEING 688

Query: 546 QVQ 548
            + 
Sbjct: 689 SLH 691



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/450 (27%), Positives = 217/450 (48%), Gaps = 50/450 (11%)

Query: 76  ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN--YLYYDALHVYKNMSVHGFDPDCYTY 133
           A G +    H+FD+I + +V  +N LIR+Y ++      D LH+Y+ M  H   P+ YT+
Sbjct: 69  ASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTF 128

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
           P  LKACS       G  IH   +  GL  +LF    L+ MY KC CL +A  +   MP+
Sbjct: 129 PFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPA 188

Query: 194 KDVVTWNSMVAGYAQNGRFDEALD--VCREMESLRIKPDADTMASLLPSVTNTSP----- 246
           +D+V WN+M+AGYA +G +  A+   +  +M+  R++P+A T+ +LLP +          
Sbjct: 189 RDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGT 248

Query: 247 --------------------------------------ENVLSVKEMFLKLDNKNLVSWN 268
                                                  ++L  + +F  +  +N V+W+
Sbjct: 249 SVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS 308

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGI-EPNAISVASVLPACGDLSALLLGRKIHRYVER 327
            +I  +   S   +A  L+  M   G+   +  S+AS L AC  L  L +G ++H  + +
Sbjct: 309 ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAK 368

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
             +  +L   N+L+ MYAK G + +A  +FD+M  +D VS+++++S Y  +G+  +A  +
Sbjct: 369 SGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLV 428

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           F KM    + PD+   VS++ ACSH   L+ GR     +  +  L         L+D+  
Sbjct: 429 FKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSICNALIDMYA 487

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           + G+++ +  +   MP   +   W +++A 
Sbjct: 488 KCGRIDLSRQVFNMMPSR-DIVSWNTMIAG 516



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 150/315 (47%), Gaps = 14/315 (4%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LHA ++    +H++ + G  L+  Y   G +     +FDE+  K+ V ++ L+  YV 
Sbjct: 360 EQLHA-LLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQ 418

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    +A  V+K M     +PD  T   ++ ACS   +L  G   H SV+  GL      
Sbjct: 419 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI 478

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY KCG +  +R+V N MPS+D+V+WN+M+AGY  +G   EA  +  EM +L  
Sbjct: 479 CNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGF 538

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN-----KNLVSWNVMIAVYANNSMPAE 282
            PD  T   LL + +++    V+  K  F  + +       +  +  M+ + +      E
Sbjct: 539 PPDGVTFICLLSACSHSGL--VIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDE 596

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV- 341
           A +    M    +  +     ++L AC     + LG+K+ R ++  +L P       L+ 
Sbjct: 597 AYEFIQSMP---LRADVRVWVALLGACRVYKNIDLGKKVSRMIQ--ELGPEGTGNFVLLS 651

Query: 342 DMYAKCGSLTEARTV 356
           ++Y+  G   EA  V
Sbjct: 652 NIYSAAGRFDEAAEV 666



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 14/249 (5%)

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNS--MPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
            +F ++ + ++ ++N +I  Y+++S    A+ + LY +M  H + PN  +    L AC  
Sbjct: 78  HLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSA 137

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           L+    GR IHR+     LQ +L +  AL+DMY KC  L +A  +F  M  +D+V+W +M
Sbjct: 138 LADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAM 197

Query: 372 ISAYGMSGQGYDAVA--LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YYFKI 425
           ++ Y   G  + AVA  L  +M M  L P++   V++L   +  G L +G     Y  + 
Sbjct: 198 LAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRA 257

Query: 426 -----MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
                   + KL   +     L+D+  + G +  A  +   MP   NE  W +L+    L
Sbjct: 258 CLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NEVTWSALIGGFVL 316

Query: 481 YSNMDIGIL 489
            S M    L
Sbjct: 317 CSRMTQAFL 325


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 181/550 (32%), Positives = 299/550 (54%), Gaps = 40/550 (7%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC D+LD   D   ++ + A +    HLH    +G  ++      G + D + VFD +  
Sbjct: 154 ACTDLLD---DEVGMEIIRAAVRRGFHLH--LYVGSSMVNFLVKRGYLADAQKVFDGMPE 208

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           K+VV +N +I  YV   L+++++ ++  M   G  P   T   +LKAC  S    VG+  
Sbjct: 209 KDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCA 268

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  V+ +G+  ++F    LV MY   G    A  V + M S+ +++WN+M++GY QNG  
Sbjct: 269 HSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMI 328

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSP-EN-----------------VLS--- 251
            E+  + R +       D+ T+ SL+   + TS  EN                 VLS   
Sbjct: 329 PESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAI 388

Query: 252 ---------VKE---MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                    +K+   +F ++  KN+++W  M+   + N    +A+ L+ QM+   +  N+
Sbjct: 389 VDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANS 448

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD- 358
           +++ S++  C  L +L  GR +H +  R     +  + +AL+DMYAKCG +  A  +F+ 
Sbjct: 449 VTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNN 508

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
           +   +DV+   SMI  YGM G G  A+ ++S+M+   L P+   FVS+L+ACSH+GL+EE
Sbjct: 509 EFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEE 568

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           G+  F  M   + + P+ +H+ACLVDL  RAG++EEA +L+KQMP +P+  +  +L++ C
Sbjct: 569 GKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGC 628

Query: 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
             + N ++GI  AD +  L    SG YV+LSNIYA+A +W  V  +R  M  +G+KK+PG
Sbjct: 629 RTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPG 688

Query: 539 AS-VEMNDQV 547
            S +E+ ++V
Sbjct: 689 YSLIEVGNKV 698



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 145/553 (26%), Positives = 260/553 (47%), Gaps = 74/553 (13%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           +K +HAQII N  + +   +  KL+R Y   G +   R+VFD+ +       N +I  ++
Sbjct: 63  VKSIHAQIIKNW-VSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFL 121

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
            N  + +   +++ M     + + YT    LKAC+      VG++I  + V+ G   +L+
Sbjct: 122 RNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLY 181

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
            G+ +V    K G L +A++V + MP KDVV WNS++ GY Q G F E++ +  EM    
Sbjct: 182 VGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGG 241

Query: 227 IKPDADTMASLLPSVTNTSPENV--------------------LSVKEMFLKLDN----- 261
           ++P   TMA+LL +   +  + V                     S+ +M+  L +     
Sbjct: 242 LRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAA 301

Query: 262 --------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
                   ++L+SWN MI+ Y  N M  E+  L+ ++   G   ++ ++ S++  C   S
Sbjct: 302 LVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTS 361

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
            L  GR +H  + RK+L+ +L L  A+VDMY+KCG++ +A  VF +M  ++V++WT+M+ 
Sbjct: 362 DLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLV 421

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKL 432
               +G   DA+ LF +M    +  +S+  VS++  C+H G L +GR  +   +   Y  
Sbjct: 422 GLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAF 481

Query: 433 VPRIEHFACLVDLLGRAGKVEEA-----------------------------------YD 457
              I   + L+D+  + GK+  A                                   Y 
Sbjct: 482 DAVIT--SALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYS 539

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIG--ILAADHIFHLAPNQSGYYVLLSNIYAKA 515
            + +  ++PN+  + SL+ AC     ++ G  +  +    H    Q  +Y  L +++++A
Sbjct: 540 RMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRA 599

Query: 516 GRWGDVKRVRKFM 528
           GR  +   + K M
Sbjct: 600 GRLEEADELVKQM 612



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 168/368 (45%), Gaps = 35/368 (9%)

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
           SN+L+    IH  ++K  +    F    L+ +Y   G L  AR V +     +    N+M
Sbjct: 57  SNTLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAM 116

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN------------------- 243
           +AG+ +N +  E   + R M S  I+ ++ T    L + T+                   
Sbjct: 117 IAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGF 176

Query: 244 -------TSPENVL-------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
                  +S  N L         +++F  +  K++V WN +I  Y    +  E++ ++L+
Sbjct: 177 HLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLE 236

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M   G+ P+ +++A++L ACG      +G   H YV    +  ++ +  +LVDMY+  G 
Sbjct: 237 MIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGD 296

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
              A  VFD M  + ++SW +MIS Y  +G   ++ ALF +++ SG   DS   VS++  
Sbjct: 297 TGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRG 356

Query: 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNER 469
           CS    LE GR     +  + +L   +     +VD+  + G +++A  +  +M  + N  
Sbjct: 357 CSQTSDLENGRILHSCIIRK-ELESHLVLSTAIVDMYSKCGAIKQATIVFGRMG-KKNVI 414

Query: 470 IWGSLVAA 477
            W +++  
Sbjct: 415 TWTAMLVG 422


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 175/528 (33%), Positives = 282/528 (53%), Gaps = 61/528 (11%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           +P     L+  Y   G + D   VF++I   ++V +N +I   V +  +  AL +   M 
Sbjct: 292 DPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK 351

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
                                       Q+H S++K+ ++ +LF   GLV MY KC  L+
Sbjct: 352 ---------------------------RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLE 384

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
           +AR   N +P KD++ WN++++GY+Q     EAL +  EM    I  +  T++++L S  
Sbjct: 385 DARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTA 444

Query: 243 NTSPENV------LSVK---------------------------EMFLKLDNKNLVSWNV 269
                +V      LSVK                            +F +    +LVS+  
Sbjct: 445 GLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTS 504

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           MI  YA      EA+ L+L+M+   ++P+    +S+L AC +LSA   G+++H ++ +  
Sbjct: 505 MITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYG 564

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
              ++   N+LV+MYAKCGS+ +A   F ++  + +VSW++MI      G G  A+ LF+
Sbjct: 565 FVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFN 624

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           +ML  G+ P+ I  VSVL AC+HAGL+ E + YF+ M E +   P  EH+AC++DLLGRA
Sbjct: 625 QMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRA 684

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           GK+ EA +L+ +MP E N  +WG+L+ A  ++ ++++G  AA+ +F L P +SG +VLL+
Sbjct: 685 GKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLA 744

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           NIYA AG+W +V  VR+ M    +KK PG S +E+ D+V    +  RS
Sbjct: 745 NIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRS 792



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 222/419 (52%), Gaps = 8/419 (1%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++  K++H  ++++     +  +   L+  Y  C + +D++ +FDEI  +NVV +N L 
Sbjct: 172 DLRIGKQVHGVVVVSG-FEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALF 230

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             YV      +A+ ++  M + G  P+ ++   ++ AC+G      G  IH  ++K+G D
Sbjct: 231 SCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYD 290

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
           ++ F+ N LV MY K G L +A  V   +   D+V+WN+++AG   +   ++AL++  +M
Sbjct: 291 WDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM 350

Query: 223 ES------LRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
           +       +++  ++D   S+      +  + +   +  F  L  K+L++WN +I+ Y+ 
Sbjct: 351 KRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQ 410

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
                EA+ L+++M   GI  N  +++++L +   L  + + R++H    +     ++ +
Sbjct: 411 YWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYV 470

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            N+L+D Y KC  + +A  +F++    D+VS+TSMI+AY   GQG +A+ LF +M    L
Sbjct: 471 VNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMEL 530

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
            PD     S+L+AC++    E+G+    +   +Y  V  I     LV++  + G +++A
Sbjct: 531 KPDRFVCSSLLNACANLSAFEQGK-QLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDA 588



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 138/537 (25%), Positives = 248/537 (46%), Gaps = 65/537 (12%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           ++HA I     L  +PSI   L+  Y  C      R + DE +  ++V ++ LI  Y  N
Sbjct: 77  QIHAHIT-KSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQN 135

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
            L   AL  +  M + G   + +T+  VLKACS    L +G Q+H  VV  G + ++F  
Sbjct: 136 GLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVA 195

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           N LV MY KC    +++R+ +++P ++VV+WN++ + Y Q     EA+ +  EM    IK
Sbjct: 196 NTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIK 255

Query: 229 PDADTMASLLPSVTNTSPENVLSVKEMFL-KLD-NKNLVSWNVMIAVYANNSMPAEAVDL 286
           P+  +++S++ + T     +   +   +L KL  + +  S N ++ +YA     A+A+ +
Sbjct: 256 PNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISV 315

Query: 287 YLQMEVHGIEPNAISVASVLPAC-----GDLSALLLG---RKIHRYVERKKLQPNLRLEN 338
           + +++    +P+ +S  +V+  C      + +  LLG   R++H  + +  ++ +L +  
Sbjct: 316 FEKIK----QPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSV 371

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
            LVDMY+KC  L +AR  F+ +  +D+++W ++IS Y    +  +A++LF +M   G+  
Sbjct: 372 GLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGF 431

Query: 399 DSIAFVSVLSACSHAGL-----------------LEEGRYYFKIMTEQYKLVPRIE---- 437
           +     ++L   S AGL                      Y    + + Y     +E    
Sbjct: 432 NQTTLSTILK--STAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAER 489

Query: 438 -----------HFACLVDLLGRAGKVEEAYDL---IKQMPMEPNERIWGSLVAACCLYSN 483
                       F  ++    + G+ EEA  L   ++ M ++P+  +  SL+ AC   S 
Sbjct: 490 IFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSA 549

Query: 484 MDIGILAADHIFHLAPNQSGYYVL-------LSNIYAKAGRWGDVKRVRKFMNSKGI 533
            + G     HI          +VL       L N+YAK G   D  R    +  +GI
Sbjct: 550 FEQGKQLHVHILKYG------FVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGI 600



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 170/345 (49%), Gaps = 41/345 (11%)

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           F P   +Y  +L  C  + SL  GLQIH  + K GL  +    N L+ +Y KC     AR
Sbjct: 52  FTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYAR 111

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS----- 240
           +++++    D+V+W+++++GYAQNG    AL    EM  L +K +  T +S+L +     
Sbjct: 112 KLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVK 171

Query: 241 ----------------------VTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIA 272
                                 V NT        +  L  K +F ++  +N+VSWN + +
Sbjct: 172 DLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFS 231

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y       EAV L+ +M + GI+PN  S++S++ AC  L     G+ IH Y+ +     
Sbjct: 232 CYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDW 291

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM- 391
           +    NALVDMYAK G L +A +VF++++  D+VSW ++I+   +      A+ L  +M 
Sbjct: 292 DPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK 351

Query: 392 --LMSGLCP---DSIAFVSV--LSACSHAGLLEEGRYYFKIMTEQ 429
             L S L     +S  FVSV  +   S   LLE+ R  F ++ E+
Sbjct: 352 RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEK 396



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 149/324 (45%), Gaps = 14/324 (4%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +   +++H  + +    HS+  +   L+ +YG C  + D   +F+E T  ++V F  +I 
Sbjct: 449 VHVCRQVHG-LSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMIT 507

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           +Y       +AL ++  M      PD +    +L AC+  ++   G Q+H  ++K G   
Sbjct: 508 AYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVL 567

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           ++F GN LV MY KCG + +A R  +++  + +V+W++M+ G AQ+G   +AL +  +M 
Sbjct: 568 DIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQML 627

Query: 224 SLRIKPDADTMASLLPSVTNTS--PENVLSVKEMFLKLDNKNLVS-WNVMIAVYANNSMP 280
              + P+  T+ S+L +  +     E  L  + M      K +   +  MI +       
Sbjct: 628 KEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKI 687

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY---VERKKLQPNLRLE 337
            EAV+L  +M     E NA    ++L A      + LGR+       +E +K   ++ L 
Sbjct: 688 NEAVELVNKMP---FEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLA 744

Query: 338 NALVDMYAKCGSLTEARTVFDQMR 361
           N    +YA  G       V   MR
Sbjct: 745 N----IYASAGKWENVAEVRRLMR 764


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 172/527 (32%), Positives = 295/527 (55%), Gaps = 27/527 (5%)

Query: 27  TLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHV 86
            +LSG A N  +++       +K+  Q+++   +  N      L+  Y   G++ D R +
Sbjct: 158 AMLSGFAQNGFVEE------ARKIFDQMLVKNEISWNG-----LLSAYVQNGRIEDARRL 206

Query: 87  FDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL 146
           FD   +  +V +N L+  YV      DA  ++  M V     D  ++  ++   +  N L
Sbjct: 207 FDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVR----DKISWNIMITGYA-QNGL 261

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY 206
           L   +     + +    ++F    +V+ + + G L EA R+  +MP K+ V+WN+M+AGY
Sbjct: 262 LSEARRLFEELPI---RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGY 318

Query: 207 AQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS 266
            Q+ + ++A ++  +M S R     +TM +      N     +L     F ++  ++ +S
Sbjct: 319 VQSQQIEKARELFDQMPS-RNTSSWNTMVTGYAQCGNIDQAKIL-----FDEMPQRDCIS 372

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           W  MI+ YA +    EA+ L+++M+  G   N  ++A  L +C +++AL LG+++H  + 
Sbjct: 373 WAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLV 432

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           +   Q      NAL+ MY KCGS+ EA  VF+ +  +D+VSW +MI+ Y   G G +A+A
Sbjct: 433 KAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALA 492

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           LF  M M+ + PD +  V VLSACSH GL+++G  YF  M + Y +    +H+ C++DLL
Sbjct: 493 LFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLL 551

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
           GRAG+++EA +L+K MP  P+   WG+L+ A  ++ + ++G  AA+ +F + P+ SG YV
Sbjct: 552 GRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYV 611

Query: 507 LLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
           LLSN+YA +GRW +V+ +R  M  KG+KK+PG S VE+ ++  I  +
Sbjct: 612 LLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTV 658



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 173/361 (47%), Gaps = 35/361 (9%)

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
           +D ++   N  ++ Y + G  + A  V N M  +  VT+N+M++GY  N +FD A  V  
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115

Query: 221 EMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
           +M      PD D ++  +         N+ + + +F ++  K++VSWN M++ +A N   
Sbjct: 116 KM------PDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFV 169

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH--RYVERKKLQPNLRLEN 338
            EA  ++ QM V     N IS        G LSA +   +I   R +   K+   +   N
Sbjct: 170 EEARKIFDQMLV----KNEISWN------GLLSAYVQNGRIEDARRLFDSKMDWEIVSWN 219

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
            L+  Y +   L +AR++FD+M  +D +SW  MI+ Y  +G   +A  LF ++ +     
Sbjct: 220 CLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR---- 275

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           D  A+ +++S     G+L+E    F+ M E+ ++      +  ++    ++ ++E+A +L
Sbjct: 276 DVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEV-----SWNAMIAGYVQSQQIEKAREL 330

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS--GYYVLLSNIYAKAG 516
             QMP   N   W ++V       N+D     A  +F   P +    +  ++S  YA++G
Sbjct: 331 FDQMP-SRNTSSWNTMVTGYAQCGNID----QAKILFDEMPQRDCISWAAMISG-YAQSG 384

Query: 517 R 517
           +
Sbjct: 385 Q 385


>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g56570
 gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
 gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 611

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 175/511 (34%), Positives = 282/511 (55%), Gaps = 37/511 (7%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +   L+ +Y   G + + R +FDE+ +++VV +  +I  Y ++     A   +  M   G
Sbjct: 47  LATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQG 106

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             P+ +T   VLK+C     L  G  +H  VVK+G++ +L+  N ++ MY  C    EA 
Sbjct: 107 TSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAA 166

Query: 186 -RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM--ESLRIKPDADTMA------- 235
             +  D+  K+ VTW +++ G+   G     L + ++M  E+  + P   T+A       
Sbjct: 167 CLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASI 226

Query: 236 -------SLLPSVTNTSPENVLSV-----------------KEMFLKLDNKNLVSWNVMI 271
                   +  SV     ++ L V                 K  F ++++K+L++WN +I
Sbjct: 227 DSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLI 286

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           +     S  +EA+ ++ + E  G  PN  +  S++ AC +++AL  G+++H  + R+   
Sbjct: 287 SEL-ERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFN 345

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQM-RCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
            N+ L NAL+DMYAKCG++ +++ VF ++   +++VSWTSM+  YG  G G +AV LF K
Sbjct: 346 KNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDK 405

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450
           M+ SG+ PD I F++VLSAC HAGL+E+G  YF +M  +Y + P  + + C+VDLLGRAG
Sbjct: 406 MVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAG 465

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAACCLYS-NMDIGILAADHIFHLAPNQSGYYVLLS 509
           K+ EAY+L+++MP +P+E  WG+++ AC  +  N  I  LAA  +  L P   G YV+LS
Sbjct: 466 KIGEAYELVERMPFKPDESTWGAILGACKAHKHNGLISRLAARKVMELKPKMVGTYVMLS 525

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            IYA  G+W D  RVRK M   G KK  G S
Sbjct: 526 YIYAAEGKWVDFARVRKMMRMMGNKKEAGMS 556


>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Vitis vinifera]
          Length = 685

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 169/471 (35%), Positives = 250/471 (53%), Gaps = 37/471 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y +CG+M D R +F   +N  VV +N +I  YV N    +AL ++ NM   G   D
Sbjct: 245 LISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQED 304

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T+  VL ACS    +  G+Q+H  V KVG   ++   + LV MY KC    +A ++ +
Sbjct: 305 YSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFS 364

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
           D+ + D +  NSM+  Y+  GR D+A                                  
Sbjct: 365 DLQAYDTILLNSMITVYSNCGRIDDA---------------------------------- 390

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
              +++F  + +K+L+SWN MI  ++ N+ P EA+DL+ +M   G+  +  S+A V+ AC
Sbjct: 391 ---RQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISAC 447

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             +S+L LG +I        L+ +  +  +LVD Y KCG +   R +FD+M   D V W 
Sbjct: 448 ASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWN 507

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           SM+  Y  +G G +A+ +F +M   G+ P  I FV VLSAC H GL+EEGR +F  M   
Sbjct: 508 SMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLD 567

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           Y + P IEH++C+VDL  RAG +E+A +LI+QMP++ +  +W S++  C  + N  +G  
Sbjct: 568 YHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKK 627

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
            A  I  L P  SG YV LS IYA    WG   +VRK M  K I K+PG S
Sbjct: 628 VAKRIIDLDPENSGAYVQLSGIYATFEDWGRSAQVRKLMYDKKIPKVPGCS 678



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 182/373 (48%), Gaps = 46/373 (12%)

Query: 127 DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN-GNGLVAMYGKCGCLKEAR 185
           D D ++    L +C+   S+  G  +H   +K G+ +++ + GN L+ MY +C  ++EA+
Sbjct: 3   DLDLHSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQ 62

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           ++  +MP ++  +WN+M+ GY ++G   ++L++   M      P  D  +  +       
Sbjct: 63  QLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSM------PHKDAFSWNVVISGFAK 116

Query: 246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE---PNAISV 302
             N+   + +F ++  KN ++WN MI  YA N  P EAV L+  + ++ +E    +   +
Sbjct: 117 EGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVL 176

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
           A+V+ AC +L AL  G++IH  +   +++ +  L ++LV++Y KCG +  A  V + M+ 
Sbjct: 177 ATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKE 236

Query: 363 QD-------------------------------VVSWTSMISAYGMSGQGYDAVALFSKM 391
            D                               VV W SMIS Y  + +  +A+ LF+ M
Sbjct: 237 PDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNM 296

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK--LVPRIEHFACLVDLLGRA 449
              G+  D   F SVLSACS  G++++G    ++    YK      I   + LVD+  + 
Sbjct: 297 RRKGVQEDYSTFASVLSACSTLGIIDQG---IQVHAHVYKVGFTNDIIIDSALVDMYSKC 353

Query: 450 GKVEEAYDLIKQM 462
            + ++A  L   +
Sbjct: 354 RRPDDACKLFSDL 366


>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
          Length = 918

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 169/514 (32%), Positives = 275/514 (53%), Gaps = 37/514 (7%)

Query: 64  PSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV 123
           PS+   L   Y  C    D R +F E+  K++V +  LI +Y        A+ ++  M  
Sbjct: 250 PSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEE 309

Query: 124 HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183
            G  PD     C+L        +  G   H ++V+     ++  GN L++MY KC  +  
Sbjct: 310 SGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDI 369

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME-------------------- 223
           A  V   +  +D  +W+SMV  Y + G   + L++ REM+                    
Sbjct: 370 AATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISS 429

Query: 224 -----SLRIKPDADTMASLLPSVTNTSPENVL-----------SVKEMFLKLDNKNLVSW 267
                 LR+   A   +    +  N+S  N L             +++F  +  K++V+W
Sbjct: 430 CSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTW 489

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
           + +I+ Y++     +A+ LY QM   G++PN+ ++ SV+ +C +L+AL  G  IH +V+ 
Sbjct: 490 SALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKD 549

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
             L+ +L +  ALVDMY KCG L  AR +FD M  +DVV+W  MIS YGM G+   A+ L
Sbjct: 550 VGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKL 609

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           FS M    + P+S+ F+++LSAC HAGL+++GR  F  M E+Y L P ++H+AC+VDLLG
Sbjct: 610 FSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRM-EEYSLEPNLKHYACMVDLLG 668

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507
           ++G ++EA D++  MP+EP+  IWG+L+ AC ++ N ++G+  A   F   P   GYY+L
Sbjct: 669 KSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYIL 728

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           +SN Y  A +W +++++R  M + G++K  G S 
Sbjct: 729 MSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWST 762



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 124/495 (25%), Positives = 223/495 (45%), Gaps = 60/495 (12%)

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDAL----HVYKN 120
           ++   L+  Y  CG + D   +FDE+  ++VV +  +I   V N    + L     + ++
Sbjct: 146 AVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRS 205

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
               G  P+  T    L+AC     L VG  +H   VK G+ +     + L +MY KC  
Sbjct: 206 AGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDS 265

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
            ++AR +  ++P KD+V+W S++  Y + G  ++A+++   ME   ++PD   ++ LL  
Sbjct: 266 TEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAG 325

Query: 241 VTNTSP---------------------------------ENVLSVKEMFLKLDNKNLVSW 267
           + N +                                  + V     +F  L  ++  SW
Sbjct: 326 LGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSW 385

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHG---IEPNAISVASVLPACGDLSALLLGRKIHRY 324
           + M+  Y    +  + ++LY +M+       E +  S+ S++ +C  L  L LG+  H Y
Sbjct: 386 SSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCY 445

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
             +     N  + NAL+ MY +CG+   AR +F  ++ +DVV+W+++IS+Y   G   DA
Sbjct: 446 SIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDA 505

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           + L+ +ML  G+ P+S   VSV+S+C++   LE G        +   L   +     LVD
Sbjct: 506 LLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHS-HVKDVGLECDLSICTALVD 564

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIW----------GSLVAACCLYSNMDIGILAADHI 494
           +  + G++  A  +   M +E +   W          G  + A  L+S M+ G       
Sbjct: 565 MYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHGEAIQALKLFSMMERG------- 616

Query: 495 FHLAPNQSGYYVLLS 509
            ++ PN   +  +LS
Sbjct: 617 -NVKPNSLTFLAILS 630



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 125/251 (49%), Gaps = 9/251 (3%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           N S+   L+  YG CG     R +F  +  K+VV ++ LI SY +     DAL +Y  M 
Sbjct: 454 NSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQML 513

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
             G  P+  T   V+ +C+   +L  G  IH  V  VGL+ +L     LV MY KCG L 
Sbjct: 514 TEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLG 573

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
            AR++ + M  +DVVTWN M++GY  +G   +AL +   ME   +KP++ T  ++L +  
Sbjct: 574 IARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACC 633

Query: 243 NTSPENVLSVKEMFLKLD----NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
           +     V   +E+F +++      NL  +  M+ +   +    EA D+   M    IEP+
Sbjct: 634 HAGL--VDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMP---IEPD 688

Query: 299 AISVASVLPAC 309
                ++L AC
Sbjct: 689 GGIWGTLLGAC 699



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 17/224 (7%)

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           WN ++      S  A  +  + +M   G  P+  +   V  A  +L AL +G  +H Y  
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 327 RKKL---QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383
           R  L     ++ + ++LV MYA+CGS+ +A  +FD+M  +DVV+WT++IS    +GQ  +
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGE 194

Query: 384 AVALFSKMLMS----GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH- 438
            ++   +M+ S    G  P+S    S L AC   G L  G          + +   + H 
Sbjct: 195 GLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVG-----TCLHGFGVKAGVGHC 249

Query: 439 ---FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
               + L  +  +    E+A  L  ++P E +   W SL+ A C
Sbjct: 250 PSVVSSLFSMYTKCDSTEDARILFPELP-EKDLVSWTSLIGAYC 292



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 111/249 (44%), Gaps = 6/249 (2%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
           L  + SI   L+  Y  CGQ+   R +FD +  ++VV +NV+I  Y  +     AL ++ 
Sbjct: 552 LECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFS 611

Query: 120 NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
            M      P+  T+  +L AC  +  +  G ++   + +  L+ NL +   +V + GK G
Sbjct: 612 MMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSG 671

Query: 180 CLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238
            L+EA  V++ MP   D   W +++     +  F+  L V +  ++    P+ D    L+
Sbjct: 672 HLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAK--KAFASDPENDGYYILM 729

Query: 239 PSVTNTSPE--NVLSVKEMFLKLDNKNLVSWNVM-IAVYANNSMPAEAVDLYLQMEVHGI 295
            +   ++ +   +  +++M      +  + W+ + I  +  N +      L+ Q E    
Sbjct: 730 SNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDICGFMKNQLTQWQHSLFEQSEFRSS 789

Query: 296 EPNAISVAS 304
           E   IS  S
Sbjct: 790 EDMCISFVS 798


>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 611

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 178/524 (33%), Positives = 287/524 (54%), Gaps = 38/524 (7%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +   L+ +Y   G + + R +FDE+  ++VV +  +I  Y ++     A   +  M   G
Sbjct: 47  LATNLIVSYFEKGLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAWECFHEMFKQG 106

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
             P+ +T   VLK+C     L  G  +H  VVK+G++ +L+  N L+ MY  C    EA 
Sbjct: 107 RSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYATCSVTMEAA 166

Query: 186 -RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM--ESLRIKPDADTMA------- 235
             +  D+  K+ VTW +++ G+   G     L + ++M  E+  + P   T+A       
Sbjct: 167 FLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENADVTPYCITIAVRASASI 226

Query: 236 -------SLLPSVTNTSPENVLSV-----------------KEMFLKLDNKNLVSWNVMI 271
                   +  SV     ++ L V                 K  F ++++K+L++WN +I
Sbjct: 227 DSVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDKDLITWNTLI 286

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           +     S  +EA+ ++ + E  G  PN  +  S++ AC +++AL  G+++H  + R+   
Sbjct: 287 SEL-ERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIYRRGFN 345

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQM-RCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
            N+ L NAL+DMYAKCG + ++  VF ++   +++VSWTSM+  YG  G G +AV LF K
Sbjct: 346 KNVELANALIDMYAKCGDIPDSERVFGEIEERRNLVSWTSMMIGYGSHGYGAEAVELFDK 405

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450
           M+ SG+ PD I F++VLSAC HAGL+E+G  YF +M  +Y + P  + + C+VDLLGRAG
Sbjct: 406 MVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAG 465

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD-IGILAADHIFHLAPNQSGYYVLLS 509
           K+ EAY+L+++MP +P+E  WG+++ AC  + +   I  LAA  +  L P   G YV+LS
Sbjct: 466 KIGEAYELVERMPFKPDESTWGAILGACKAHKHTGLISRLAAKKVMELKPRMVGTYVMLS 525

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
            IYA  G+W +  RVRK M   G KK  G S +E+ +QV   A+
Sbjct: 526 YIYAAEGKWVEFARVRKMMRMMGNKKEAGMSWIEVENQVFSFAV 569


>gi|255538308|ref|XP_002510219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223550920|gb|EEF52406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1113

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 172/535 (32%), Positives = 275/535 (51%), Gaps = 41/535 (7%)

Query: 48   KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
            K +H    I   LH +P +   L   Y  CG +    ++F+E+ +K+VV +N +I +Y  
Sbjct: 563  KSIHG-FGIKSGLHLDPQVKNALTSMYAKCGDLEAAEYLFEEMMDKSVVSWNTMIGAYGQ 621

Query: 108  NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
            N  + +A+ V+K M   G +    T   +  A +   S      IHC  +KVGL  +   
Sbjct: 622  NGFFDEAMFVFKRMIGAGVEVSQVTIMSLPSANANPES------IHCYTIKVGLADDASV 675

Query: 168  GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
               L+ MY + G    A  +   +P K++V+  +++  YA+ G     ++   +M  L +
Sbjct: 676  VTSLICMYARYGSTDHAELLYWSLPQKNLVSLTAIITSYAEAGNLGLVMESFSQMHQLNM 735

Query: 228  KPDADTMASLLPSVTN---------------------------------TSPENVLSVKE 254
            KPD+  M S+L  + +                                 +   NV ++  
Sbjct: 736  KPDSVAMLSILHGIADPVHICIGHVFHGYAIKSGLDTFNLVTNGLISMYSKFNNVEALFG 795

Query: 255  MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
            +F  +  K L+SWN +I+        + A++L+ QM++HG  P+AI++AS+L  C  L  
Sbjct: 796  LFSGMHEKPLISWNSVISGCVQAGRASHAIELFCQMKMHGCNPDAITIASLLSGCSQLGY 855

Query: 315  LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
            L  G ++H Y+ R KL+    +  AL+ MY KCGS+  A  VF  +    + +W +MIS 
Sbjct: 856  LQFGERLHSYILRNKLEMEDFVGTALIHMYTKCGSIVHAERVFKSIGKPCLATWNAMISG 915

Query: 375  YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
            Y   G  + A+  +S+M   G+ PD I F+ VL+AC+H GL+ EGR YF+IMT+ Y +VP
Sbjct: 916  YSCYGFEHKALTCYSEMQEQGVEPDKITFLGVLAACTHGGLIHEGRRYFQIMTKVYDMVP 975

Query: 435  RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
             ++H AC+V LL R G  EEA   IK M  EP+  +WG+ ++ACC++  + +G   A  +
Sbjct: 976  TLQHCACMVGLLARVGLFEEALLFIKNMEKEPDSAVWGAFLSACCIHQEVKLGEYLAKKL 1035

Query: 495  FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEM-NDQVQ 548
            + L     G YVL+SN+YA  GRW DV RVR+ M   G     G  + M ND+++
Sbjct: 1036 YLLDCRNGGLYVLMSNLYAVTGRWDDVARVREMMKDAGGDGNSGWKLLMSNDEIR 1090



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 204/449 (45%), Gaps = 39/449 (8%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +   L+  Y   G++    + FD +  ++VV +N LI  Y  N   + AL ++  M   G
Sbjct: 479 VSTALLDLYMKLGRVSYAHNAFDYMPIRDVVSWNALICGYSRNGYDFSALELFVQMLKLG 538

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           F P   T   +L +C     +  G  IH   +K GL  +    N L +MY KCG L+ A 
Sbjct: 539 FCPRQTTLVGLLPSCGQLELVFQGKSIHGFGIKSGLHLDPQVKNALTSMYAKCGDLEAAE 598

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
            +  +M  K VV+WN+M+  Y QNG FDEA+ V + M    ++    T+ S LPS  N +
Sbjct: 599 YLFEEMMDKSVVSWNTMIGAYGQNGFFDEAMFVFKRMIGAGVEVSQVTIMS-LPSA-NAN 656

Query: 246 PENVL-----------------------------SVKEMFLKLDNKNLVSWNVMIAVYAN 276
           PE++                                + ++  L  KNLVS   +I  YA 
Sbjct: 657 PESIHCYTIKVGLADDASVVTSLICMYARYGSTDHAELLYWSLPQKNLVSLTAIITSYAE 716

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
                  ++ + QM    ++P+++++ S+L    D   + +G   H Y  +  L     +
Sbjct: 717 AGNLGLVMESFSQMHQLNMKPDSVAMLSILHGIADPVHICIGHVFHGYAIKSGLDTFNLV 776

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            N L+ MY+K  ++     +F  M  + ++SW S+IS    +G+   A+ LF +M M G 
Sbjct: 777 TNGLISMYSKFNNVEALFGLFSGMHEKPLISWNSVISGCVQAGRASHAIELFCQMKMHGC 836

Query: 397 CPDSIAFVSVLSACSHAGLLEEG-RYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVE 453
            PD+I   S+LS CS  G L+ G R +  I+  + ++    E F    L+ +  + G + 
Sbjct: 837 NPDAITIASLLSGCSQLGYLQFGERLHSYILRNKLEM----EDFVGTALIHMYTKCGSIV 892

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYS 482
            A  + K +  +P    W ++++    Y 
Sbjct: 893 HAERVFKSIG-KPCLATWNAMISGYSCYG 920



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 176/381 (46%), Gaps = 54/381 (14%)

Query: 139 ACSGSNSL---LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
           A  GSNSL      +QI   ++K G+D  ++    L+ +Y K G +  A    + MP +D
Sbjct: 448 APKGSNSLDANTEAIQIQNHLIKRGIDQFVYVSTALLDLYMKLGRVSYAHNAFDYMPIRD 507

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT------------- 242
           VV+WN+++ GY++NG    AL++  +M  L   P   T+  LLPS               
Sbjct: 508 VVSWNALICGYSRNGYDFSALELFVQMLKLGFCPRQTTLVGLLPSCGQLELVFQGKSIHG 567

Query: 243 -------NTSPE-------------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                  +  P+             ++ + + +F ++ +K++VSWN MI  Y  N    E
Sbjct: 568 FGIKSGLHLDPQVKNALTSMYAKCGDLEAAEYLFEEMMDKSVVSWNTMIGAYGQNGFFDE 627

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A+ ++ +M   G+E + +++ S LP     SA      IH Y  +  L  +  +  +L+ 
Sbjct: 628 AMFVFKRMIGAGVEVSQVTIMS-LP-----SANANPESIHCYTIKVGLADDASVVTSLIC 681

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MYA+ GS   A  ++  +  +++VS T++I++Y  +G     +  FS+M    + PDS+A
Sbjct: 682 MYARYGSTDHAELLYWSLPQKNLVSLTAIITSYAEAGNLGLVMESFSQMHQLNMKPDSVA 741

Query: 403 FVSVLSACSHA-----GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
            +S+L   +       G +  G Y  K   + + LV        L+ +  +   VE  + 
Sbjct: 742 MLSILHGIADPVHICIGHVFHG-YAIKSGLDTFNLVTN-----GLISMYSKFNNVEALFG 795

Query: 458 LIKQMPMEPNERIWGSLVAAC 478
           L   M  +P    W S+++ C
Sbjct: 796 LFSGMHEKPLIS-WNSVISGC 815


>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
 gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
 gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
          Length = 767

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 169/514 (32%), Positives = 275/514 (53%), Gaps = 37/514 (7%)

Query: 64  PSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV 123
           PS+   L   Y  C    D R +F E+  K++V +  LI +Y        A+ ++  M  
Sbjct: 250 PSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEE 309

Query: 124 HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183
            G  PD     C+L        +  G   H ++V+     ++  GN L++MY KC  +  
Sbjct: 310 SGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDI 369

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME-------------------- 223
           A  V   +  +D  +W+SMV  Y + G   + L++ REM+                    
Sbjct: 370 AATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISS 429

Query: 224 -----SLRIKPDADTMASLLPSVTNTSPENVL-----------SVKEMFLKLDNKNLVSW 267
                 LR+   A   +    +  N+S  N L             +++F  +  K++V+W
Sbjct: 430 CSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTW 489

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
           + +I+ Y++     +A+ LY QM   G++PN+ ++ SV+ +C +L+AL  G  IH +V+ 
Sbjct: 490 SALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKD 549

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
             L+ +L +  ALVDMY KCG L  AR +FD M  +DVV+W  MIS YGM G+   A+ L
Sbjct: 550 VGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKL 609

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           FS M    + P+S+ F+++LSAC HAGL+++GR  F  M E+Y L P ++H+AC+VDLLG
Sbjct: 610 FSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRM-EEYSLEPNLKHYACMVDLLG 668

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507
           ++G ++EA D++  MP+EP+  IWG+L+ AC ++ N ++G+  A   F   P   GYY+L
Sbjct: 669 KSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYIL 728

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           +SN Y  A +W +++++R  M + G++K  G S 
Sbjct: 729 MSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWST 762



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 124/495 (25%), Positives = 223/495 (45%), Gaps = 60/495 (12%)

Query: 65  SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDAL----HVYKN 120
           ++   L+  Y  CG + D   +FDE+  ++VV +  +I   V N    + L     + ++
Sbjct: 146 AVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRS 205

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
               G  P+  T    L+AC     L VG  +H   VK G+ +     + L +MY KC  
Sbjct: 206 AGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDS 265

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
            ++AR +  ++P KD+V+W S++  Y + G  ++A+++   ME   ++PD   ++ LL  
Sbjct: 266 TEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAG 325

Query: 241 VTNTSP---------------------------------ENVLSVKEMFLKLDNKNLVSW 267
           + N +                                  + V     +F  L  ++  SW
Sbjct: 326 LGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSW 385

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHG---IEPNAISVASVLPACGDLSALLLGRKIHRY 324
           + M+  Y    +  + ++LY +M+       E +  S+ S++ +C  L  L LG+  H Y
Sbjct: 386 SSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCY 445

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
             +     N  + NAL+ MY +CG+   AR +F  ++ +DVV+W+++IS+Y   G   DA
Sbjct: 446 SIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDA 505

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           + L+ +ML  G+ P+S   VSV+S+C++   LE G        +   L   +     LVD
Sbjct: 506 LLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHS-HVKDVGLECDLSICTALVD 564

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIW----------GSLVAACCLYSNMDIGILAADHI 494
           +  + G++  A  +   M +E +   W          G  + A  L+S M+ G       
Sbjct: 565 MYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHGEAIQALKLFSMMERG------- 616

Query: 495 FHLAPNQSGYYVLLS 509
            ++ PN   +  +LS
Sbjct: 617 -NVKPNSLTFLAILS 630



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 125/251 (49%), Gaps = 9/251 (3%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           N S+   L+  YG CG     R +F  +  K+VV ++ LI SY +     DAL +Y  M 
Sbjct: 454 NSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQML 513

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
             G  P+  T   V+ +C+   +L  G  IH  V  VGL+ +L     LV MY KCG L 
Sbjct: 514 TEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLG 573

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
            AR++ + M  +DVVTWN M++GY  +G   +AL +   ME   +KP++ T  ++L +  
Sbjct: 574 IARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACC 633

Query: 243 NTSPENVLSVKEMFLKLD----NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
           +     V   +E+F +++      NL  +  M+ +   +    EA D+   M    IEP+
Sbjct: 634 HAGL--VDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMP---IEPD 688

Query: 299 AISVASVLPAC 309
                ++L AC
Sbjct: 689 GGIWGTLLGAC 699



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 17/224 (7%)

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           WN ++      S  A  +  + +M   G  P+  +   V  A  +L AL +G  +H Y  
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 327 RKKL---QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383
           R  L     ++ + ++LV MYA+CGS+ +A  +FD+M  +DVV+WT++IS    +GQ  +
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGE 194

Query: 384 AVALFSKMLMS----GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH- 438
            ++   +M+ S    G  P+S    S L AC   G L  G          + +   + H 
Sbjct: 195 GLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVG-----TCLHGFGVKAGVGHC 249

Query: 439 ---FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
               + L  +  +    E+A  L  ++P E +   W SL+ A C
Sbjct: 250 PSVVSSLFSMYTKCDSTEDARILFPELP-EKDLVSWTSLIGAYC 292



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 6/181 (3%)

Query: 47  LKKLHAQIIINQH-----LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           L  L    +I+ H     L  + SI   L+  Y  CGQ+   R +FD +  ++VV +NV+
Sbjct: 534 LAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVM 593

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           I  Y  +     AL ++  M      P+  T+  +L AC  +  +  G ++   + +  L
Sbjct: 594 ISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSL 653

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDVCR 220
           + NL +   +V + GK G L+EA  V++ MP   D   W +++     +  F+  L V +
Sbjct: 654 EPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAK 713

Query: 221 E 221
           +
Sbjct: 714 K 714


>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Brachypodium distachyon]
          Length = 564

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 166/520 (31%), Positives = 294/520 (56%), Gaps = 48/520 (9%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+++  A G +   R VFDE+ +++VV +  ++  Y +N  +  AL +++ M   G  P+
Sbjct: 9   LIKSLCAGGALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGVGPN 68

Query: 130 CYTYPCVLKACSG--SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG---CLKEA 184
            +T   VL AC G  ++       +H   V+ G+D+  +  N L+  Y  C     ++E+
Sbjct: 69  EFTLSSVLTACRGGAADGGCEPSSLHAVAVRRGVDHMPYVVNALIEAYASCEEGVGVEES 128

Query: 185 RRVLNDMPS-KDVVTWNSMVAGYAQNGRFDEALDVCREM--ESLRIKPDADTMA-SLLPS 240
           R++ + + S +   +W SMVAGY++ G+    L + + M  + + + P   ++A     S
Sbjct: 129 RKLFDALGSGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIALHACAS 188

Query: 241 VTN------------------------------TSPENVLSVKEMFLKLDNKNLVSWNVM 270
           + N                               S  N+L  + +F ++  +NLV+WN M
Sbjct: 189 IANLCVGQQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPERNLVTWNTM 248

Query: 271 IAVYA--NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
           IA Y+  N+ M   A+ L  +M    ++PN  ++ S+  AC  L++L  G+++H    R+
Sbjct: 249 IAWYSQCNHLM---ALQLLREMN---LQPNCFTLTSITSACAGLASLRFGQQVHGAALRR 302

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
               +L++ NALVDMY+KCGS+  A+ +F+ M  +D +SWTSMI+ YGM+G   +++ LF
Sbjct: 303 NYGKDLQMCNALVDMYSKCGSIANAKKMFNMMDYKDKLSWTSMITGYGMNGYANESIQLF 362

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
           + M+ +G+ PD + F+ ++ AC+H GL++EG  +F+ MT +Y L P  E + C+ +LL R
Sbjct: 363 TSMIHAGVHPDHVVFLGLICACNHGGLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNLLAR 422

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508
           AG++ EA+DLI +MP  P+E +WG+L+ AC ++ N+++G LAA  I  + P+++  YVLL
Sbjct: 423 AGRLREAFDLIHRMPFAPDETVWGALLGACKMHKNVELGRLAARKIIEINPDRAKTYVLL 482

Query: 509 SNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           +NIYA   +WG+    R+ +   G +K  G S +++ D++
Sbjct: 483 ANIYAAGNKWGEYADTRRLLRGIGSRKEAGTSWIDVTDKI 522



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 162/367 (44%), Gaps = 44/367 (11%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMV---DTRHVFDEI-TNKNVVFFNVLIRSY 105
           LHA + + + +   P +   L+  Y +C + V   ++R +FD + + +    +  ++  Y
Sbjct: 93  LHA-VAVRRGVDHMPYVVNALIEAYASCEEGVGVEESRKLFDALGSGRTAASWTSMVAGY 151

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
                    L +++ M   G +   +T    L AC+   +L VG Q+H   ++   + NL
Sbjct: 152 SRWGQEQTGLQLFQTMIQDGIELSPFTCSIALHACASIANLCVGQQLHVLCLRKAFNANL 211

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
              N L+ MY  C  L +ARR+ +++P +++VTWN+M+A Y+Q      AL + REM   
Sbjct: 212 TVANSLIDMYCSCANLLDARRLFDEIPERNLVTWNTMIAWYSQCNHL-MALQLLREMN-- 268

Query: 226 RIKPDADTMASLLPSVTNTSP---------------------------------ENVLSV 252
            ++P+  T+ S+  +    +                                   ++ + 
Sbjct: 269 -LQPNCFTLTSITSACAGLASLRFGQQVHGAALRRNYGKDLQMCNALVDMYSKCGSIANA 327

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           K+MF  +D K+ +SW  MI  Y  N    E++ L+  M   G+ P+ +    ++ AC   
Sbjct: 328 KKMFNMMDYKDKLSWTSMITGYGMNGYANESIQLFTSMIHAGVHPDHVVFLGLICACNHG 387

Query: 313 SALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMR-CQDVVSWTS 370
             +  G    R +  +  LQPN  +   + ++ A+ G L EA  +  +M    D   W +
Sbjct: 388 GLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNLLARAGRLREAFDLIHRMPFAPDETVWGA 447

Query: 371 MISAYGM 377
           ++ A  M
Sbjct: 448 LLGACKM 454


>gi|449496714|ref|XP_004160205.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 175/524 (33%), Positives = 280/524 (53%), Gaps = 41/524 (7%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           II      NP I   L+  YG C  + D   VFDE++  +VV +N L+  Y+       A
Sbjct: 94  IIKLGFSLNPYIFTALVDMYGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMA 153

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
           + ++  M   G +P  ++    L  CS      +G Q+H   +K+    N+  G GL+ M
Sbjct: 154 VSLFLEMLKKGIEPTPFSLSGGLVGCSQLQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDM 213

Query: 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
           Y KC  L+++RRV + M +K+V TW SM++GYA+N    EA+ + REM  L ++P+  T 
Sbjct: 214 YSKCCNLQDSRRVFDIMLNKNVFTWTSMISGYARNQLPHEAMXLMREMLHLNLEPNGMTY 273

Query: 235 ASLLPSVTNTSPENVLSVKEMFLKLDNK-------------------------------- 262
            SLL S +   P +    K++  ++  +                                
Sbjct: 274 NSLLSSFS--CPRHFDKCKQIHCRIITEGYESNNYIAVTLVTAYSECCGSLEDYRKVCSN 331

Query: 263 ----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
               + +SWN +IA + N  +  EA++ ++QM     + +  +  S+  A G  SAL  G
Sbjct: 332 IRMSDQISWNAVIAGFTNLGIGEEALECFIQMRREKFDVDFFTFTSIFKAIGMTSALEEG 391

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           ++IH  V +     NL ++N LV MYA+ G++ +++ VF  M   D++SW S++S     
Sbjct: 392 KQIHGLVYKTGYTLNLSVQNGLVSMYARSGAIRDSKMVFSMMNEHDLISWNSLLSGCAYH 451

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV--PRI 436
           G G +A+ LF KM  + + PD+ +F++VL+ACSH GLL++G  YFK+M    +LV  P++
Sbjct: 452 GCGEEAIDLFEKMRRTCIKPDNTSFLAVLTACSHVGLLDKGLEYFKLMRNS-ELVEPPKL 510

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           EH+A LVDL GRAGK+ EA   I+ +P+EP   I+ +L++AC ++ N DI I  A  +  
Sbjct: 511 EHYATLVDLFGRAGKLYEAEAFIESIPIEPGISIYKALLSACLIHGNKDIAIRTAKKLLE 570

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           L P     Y++LSN   + G W D   +R+ M+++G+KK PG S
Sbjct: 571 LYPYDPATYIMLSNALGRDGYWDDAASIRRLMSNRGVKKEPGFS 614



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 177/390 (45%), Gaps = 38/390 (9%)

Query: 124 HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183
           HG  P        +  C+ S  L  G+Q+H +++K+G   N +    LV MYGKC  + +
Sbjct: 62  HGSPPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISD 121

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
           A +V ++M    VVTWNS+V GY Q G    A+ +  EM    I+P   +++  L   + 
Sbjct: 122 AHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQ 181

Query: 244 TSPENVLS-VKEMFLKLD--------------------------------NKNLVSWNVM 270
               ++ S +  M LKL                                 NKN+ +W  M
Sbjct: 182 LQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSM 241

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
           I+ YA N +P EA+ L  +M    +EPN ++  S+L +          ++IH  +  +  
Sbjct: 242 ISGYARNQLPHEAMXLMREMLHLNLEPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEGY 301

Query: 331 QPNLRLENALVDMYAK-CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           + N  +   LV  Y++ CGSL + R V   +R  D +SW ++I+ +   G G +A+  F 
Sbjct: 302 ESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFI 361

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ-YKLVPRIEHFACLVDLLGR 448
           +M       D   F S+  A      LEEG+    ++ +  Y L   +++   LV +  R
Sbjct: 362 QMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQN--GLVSMYAR 419

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           +G + ++  ++  M  E +   W SL++ C
Sbjct: 420 SGAIRDS-KMVFSMMNEHDLISWNSLLSGC 448



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 8/232 (3%)

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
           +   +Q+  HG  P    +   +  C   + L  G ++H  + +     N  +  ALVDM
Sbjct: 53  IQFLVQLLRHGSPPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDM 112

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
           Y KC S+++A  VFD+M C  VV+W S+++ Y  +G    AV+LF +ML  G+ P   + 
Sbjct: 113 YGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSL 172

Query: 404 VSVLSACSHAGLLEEGRYYFKI--MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
              L  CS    L++G    ++  M+ + +    +     L+D+  +   ++++  +   
Sbjct: 173 SGGLVGCSQ---LQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDI 229

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH--LAPNQSGYYVLLSNI 511
           M +  N   W S+++           +     + H  L PN   Y  LLS+ 
Sbjct: 230 M-LNKNVFTWTSMISGYARNQLPHEAMXLMREMLHLNLEPNGMTYNSLLSSF 280


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/511 (32%), Positives = 279/511 (54%), Gaps = 13/511 (2%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           I  L ++HAQIII+  L S+  I  +L+ +      +  +  VF+    KN+  FN LIR
Sbjct: 94  ILQLHQIHAQIIIHN-LSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIR 152

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
               N  +++A+  ++ M   G  PD  TYP VLK+ +G  S  +G+ IHC +++ G++ 
Sbjct: 153 GLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIEL 212

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-----DVVTWNSMVAGYAQNGRFDEALDV 218
           + F    LV MY K   L  A +V ++ P +       + WN ++ G  + G   +A+ +
Sbjct: 213 DSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKL 272

Query: 219 CREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNS 278
            + M     K +  + ++L+         ++    E+F ++  KN+VSW  M+  ++ N 
Sbjct: 273 FKAMP----KKENVSWSTLIDGFAKNG--DMDRAMELFDQMPEKNVVSWTTMVDGFSRNG 326

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
              +A+ ++ +M   G+ PNA ++ S L AC  +  L  G +IH+Y++   L     L  
Sbjct: 327 DSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGT 386

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           ALVDMYAKCG++  A  VF +   + + +WT MI  + + G    A+A F +M+ +G+ P
Sbjct: 387 ALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKP 446

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           D + F+++L+AC H+G ++ G  +F  M   Y + P ++H+  +VD+LGR+G+++EA   
Sbjct: 447 DEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRF 506

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
           I++MPM P+  IWG+L  AC  +    +   A + +  L P  +G Y+ LSN YA  G+W
Sbjct: 507 IERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQW 566

Query: 519 GDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            D +RVR  M ++G+ K  G S +E+  QV 
Sbjct: 567 EDAERVRVLMQNRGVHKNSGWSCIEVEGQVH 597



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 196/462 (42%), Gaps = 78/462 (16%)

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           P   T    +    GS ++L   QIH  ++   L  +      L++       +  +  V
Sbjct: 76  PTTPTEAHFISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAV 135

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT-SP 246
            N    K++ T+N+++ G   N  F  A+   R M    IKPD  T   +L S+    S 
Sbjct: 136 FNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFST 195

Query: 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
           E  +++  M L+              +  ++ +    VD+Y+++E  G   +A  V    
Sbjct: 196 ELGMAIHCMILR------------CGIELDSFVRVSLVDMYVKVEKLG---SAFKVFDES 240

Query: 307 PACGD--LSALLLGRKIHRYVERKKLQPNLRLENA-----------LVDMYAKCGSLTEA 353
           P   D   SALL    I    +   ++  ++L  A           L+D +AK G +  A
Sbjct: 241 PERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRA 300

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
             +FDQM  ++VVSWT+M+  +  +G    A+++FSKML  G+ P++   VS LSAC+  
Sbjct: 301 MELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKI 360

Query: 414 GLLEEG-RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL-------------- 458
           G LE G R +  I      L   +     LVD+  + G +E A ++              
Sbjct: 361 GGLEAGLRIHKYIKDNGLHLTEALG--TALVDMYAKCGNIESASEVFGETEQKSIRTWTV 418

Query: 459 -----------------IKQM---PMEPNERIWGSLVAACCLYSNMDIGILAADHI---F 495
                             KQM    ++P+E ++ +L+ AC     +DIG+   D +   +
Sbjct: 419 MIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDY 478

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
            + P+   Y +++  +    GR G +K   +F     I++MP
Sbjct: 479 CIEPSMKHYTLIVDML----GRSGQLKEALRF-----IERMP 511


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 171/505 (33%), Positives = 283/505 (56%), Gaps = 61/505 (12%)

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           ++R Y +   +   + +Y+ M   G  PD + YP ++K+         G+  H  V+K+G
Sbjct: 1   MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTG-----GIGFHAHVLKLG 55

Query: 161 LDYNLFNGNGLVAMYG-------------------------------------------- 176
              + F  N ++ MY                                             
Sbjct: 56  HGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGY 115

Query: 177 -KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA 235
            K   L+ ARR  + MP + VV+WN+M++GYAQNG  +EAL +  EM  L    ++ T  
Sbjct: 116 AKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEM--LGAYRNSVTWN 173

Query: 236 SLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHG 294
           +++ +       ++ S +++F  +  +N+V+WN MIA YA N   A A++L+ +M     
Sbjct: 174 AMISAYMRVG--DLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKK 231

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
           + P+ +++ SV+ ACG L AL LG  + R++   +++ ++   NA++ MY++CGS+ +A+
Sbjct: 232 LTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAK 291

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            VF +M  +DVVS+ ++IS +   G G +A+ L S M   G+ PD + F+ VL+ACSHAG
Sbjct: 292 RVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAG 351

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
           LLEEGR  F+ + +     P I+H+AC+VDLLGR G++E+A   +++MPMEP+  ++GSL
Sbjct: 352 LLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSL 406

Query: 475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534
           + A  ++  +++G LAA+ +F L P+ SG ++LLSNIYA AGRW DV+R+R+ M   G+K
Sbjct: 407 LNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVK 466

Query: 535 KMPGAS-VEMNDQVQIIALPLRSSK 558
           K  G S VE   ++    +  RS +
Sbjct: 467 KTTGWSWVEYGGKLHKFIVADRSHE 491



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 144/302 (47%), Gaps = 25/302 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDP 128
           ++  Y   G +   R +F+ +  +NVV +N +I  Y  N     A+ ++K M +     P
Sbjct: 175 MISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTP 234

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D  T   V+ AC    +L +G  +   + +  +  ++   N ++ MY +CG +++A+RV 
Sbjct: 235 DEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVF 294

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
            +M ++DVV++N++++G+A +G   EA+++   M+   I+PD  T   +L + ++     
Sbjct: 295 QEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGL-- 352

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
           +   +++F  + +  +  +  M+ +        E  D    ME   +EP+A         
Sbjct: 353 LEEGRKVFESIKDPAIDHYACMVDLLGR---VGELEDAKRTMERMPMEPHA--------- 400

Query: 309 CGDLSALLLGRKIHRYVERKKLQPN----LRLENA-----LVDMYAKCGSLTEARTVFDQ 359
            G   +LL   +IH+ VE  +L  N    L  +N+     L ++YA  G   +   + + 
Sbjct: 401 -GVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREA 459

Query: 360 MR 361
           M+
Sbjct: 460 MK 461


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 169/457 (36%), Positives = 261/457 (57%), Gaps = 40/457 (8%)

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
           C+T   +LK C+  N L  G  IH  ++      +L   N L+ +Y KCG L  AR++ +
Sbjct: 18  CHT---LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFD 74

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
           +M S+DVVTW +++ GY+Q+ R  +AL +  EM  + +KP+  T+ASLL + +     +V
Sbjct: 75  EMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDV 134

Query: 250 LSVKEM-----------------------------------FLKLDNKNLVSWNVMIAVY 274
           L  +++                                   F  + +KN VSWN +IA Y
Sbjct: 135 LQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGY 194

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           A      +A  L+  M    ++P   + +SVL AC  + +L  G+ +H  + +   +   
Sbjct: 195 ARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVA 254

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + N L+DMYAK GS+ +A+ VFD++  +DVVSW SM++ Y   G G  A+  F +ML +
Sbjct: 255 FVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRT 314

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
            + P+ I F+ VL+ACSHAGLL+EGR+YF +M ++Y + P+I H+  +VDLLGRAG ++ 
Sbjct: 315 RIAPNDITFLCVLTACSHAGLLDEGRHYFDMM-KKYNVEPQISHYVTMVDLLGRAGHLDR 373

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A   I +MP++P   +WG+L+ AC ++ NM++G  AA+ IF L  +  G +VLL NIYA 
Sbjct: 374 AIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYAL 433

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           AGRW D  +VRK M   G+KK P  S VEM ++V + 
Sbjct: 434 AGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVF 470



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 188/401 (46%), Gaps = 44/401 (10%)

Query: 32  DACNDILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFD 88
           + C+ +L +   +  L   K +HA +++N     +  +   L+  Y  CG +V  R +FD
Sbjct: 16  EICHTLLKRCTHLNKLNEGKIIHA-LLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFD 74

Query: 89  EITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACS--GSNSL 146
           E+++++VV +  LI  Y  +    DAL +   M   G  P+ +T   +LKA S  GS  +
Sbjct: 75  EMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDV 134

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY 206
           L G Q+H   ++ G D N++    ++ MY +C  L+EA+ + + M SK+ V+WN+++AGY
Sbjct: 135 LQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGY 194

Query: 207 AQNGRFDEALDVCREMESLRIKPDADTMASLLPS-------------------------- 240
           A+ G+ D+A  +   M    +KP   T +S+L +                          
Sbjct: 195 ARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVA 254

Query: 241 -VTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
            V NT         ++   K++F +L  +++VSWN M+  Y+ + +   A+  + +M   
Sbjct: 255 FVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRT 314

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
            I PN I+   VL AC     L  GR     +++  ++P +     +VD+  + G L  A
Sbjct: 315 RIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRA 374

Query: 354 RTVFDQMRCQDVVS-WTSMISAYGMSGQ----GYDAVALFS 389
                +M  +   + W +++ A  M       GY A  +F 
Sbjct: 375 IQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFE 415


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 177/551 (32%), Positives = 290/551 (52%), Gaps = 40/551 (7%)

Query: 35  NDILDKYPD-IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
           N ++D  PD ++  K +H+ +  ++H   +  +   L+ TY  CG + D R VFD +  +
Sbjct: 18  NSVVD--PDALRKGKFIHSCVRESEH-SLDVFVNTALVNTYTKCGSLTDARKVFDGMPCR 74

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           +V  +N +I +Y  +    +A  +++ M   G   D  T+  +L AC    +L  G  + 
Sbjct: 75  SVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVR 134

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
            S+ +   + +LF G  L+ MY +C   + A +V   M  K+++TW++++  +A +G   
Sbjct: 135 ESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCG 194

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS---------------------- 251
           EAL   R M+   I P+  T  SLL   T  S    LS                      
Sbjct: 195 EALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALV 254

Query: 252 ------------VKEMFLK-LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
                       V E+ L+ +D + + +WNV+I  Y  +    EA++ Y ++++  I  +
Sbjct: 255 NVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVD 314

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
            ++  SVL AC   ++L  G+ IH       L  ++ ++NAL +MY+KCGS+  AR +FD
Sbjct: 315 KVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFD 374

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
            M  +  VSW  M+ AY   G+  + + L  KM   G+  + I FVSVLS+CSHAGL+ E
Sbjct: 375 SMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAE 434

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           G  YF  +     +  + EH+ CLVDLLGRAGK++EA   I +MP EP    W SL+ AC
Sbjct: 435 GCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGAC 494

Query: 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
            ++ ++D G LAA  +  L P  S   V+LSNIY++ G W +  ++R+ M S+ +KK+PG
Sbjct: 495 RVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPG 554

Query: 539 -ASVEMNDQVQ 548
            +S+++ ++V 
Sbjct: 555 ISSIQVKNKVH 565



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 171/382 (44%), Gaps = 42/382 (10%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M + G   +  T+  VL +    ++L  G  IH  V +     ++F    LV  Y KCG 
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           L +AR+V + MP + V TWNSM++ Y+ + R  EA  + + M+    + D  T  S+L +
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 241 VTN------------------------------------TSPENVLSVKEMFLKLDNKNL 264
             N                                     SPEN   V   F ++  KNL
Sbjct: 121 CVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQV---FGRMKQKNL 177

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           ++W+ +I  +A++    EA+  +  M+  GI PN ++  S+L      S L    +IH  
Sbjct: 178 ITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLL 237

Query: 325 VERKKLQPNLRLENALVDMYAKC--GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY 382
           +    L     + NALV++Y +C  G L  A  +  +M  Q + +W  +I+ Y + G+  
Sbjct: 238 ITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSR 297

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL 442
           +A+  + ++ +  +  D + F+SVL+AC+ +  L EG+       E   L   +     L
Sbjct: 298 EALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVE-CGLDSDVIVKNAL 356

Query: 443 VDLLGRAGKVEEAYDLIKQMPM 464
            ++  + G +E A  +   MP+
Sbjct: 357 TNMYSKCGSMENARRIFDSMPI 378



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 102/189 (53%), Gaps = 4/189 (2%)

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M + G++ N I+  +VL +  D  AL  G+ IH  V   +   ++ +  ALV+ Y KCGS
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           LT+AR VFD M C+ V +W SMISAY +S +  +A  +F +M   G   D + F+S+L A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 410 CSHAGLLEEGRYYFKIMTE-QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
           C +   L+ G++  + ++E  ++L   +     L+ +  R    E A  +  +M  + N 
Sbjct: 121 CVNPENLQHGKHVRESISETSFELDLFVG--TALITMYARCRSPENAAQVFGRMK-QKNL 177

Query: 469 RIWGSLVAA 477
             W +++ A
Sbjct: 178 ITWSAIITA 186


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 181/519 (34%), Positives = 286/519 (55%), Gaps = 61/519 (11%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH---VFDEITNKNVVFFNV 100
           ++ LK++HA ++     H N +I  +++R   A     D  +   VFD++  +N   +N 
Sbjct: 28  MRELKQVHAFLVKTGQTHDN-AIATEILR-LSATSDFRDIGYALSVFDQLPERNCFAWNT 85

Query: 101 LIRSYVNNY-LYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
           +IR+       + DAL V+  M S    +P+ +T+P VLKAC+    L  G Q+H  ++K
Sbjct: 86  VIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLK 145

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEA--------------RRVLNDMPSKD--VVTWNSM 202
            GL  + F    L+ MY  CG +++A              R ++ D   ++  VV  N M
Sbjct: 146 FGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVM 205

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK 262
           V GYA+ G                                     N+ + +E+F ++  +
Sbjct: 206 VDGYARVG-------------------------------------NLKAARELFDRMAQR 228

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKI 321
           ++VSWNVMI+ YA N    EA++++ +M   G + PN +++ SVLPA   L  L LG+ +
Sbjct: 229 SVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWV 288

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
           H Y E+ K++ +  L +ALVDMYAKCGS+ +A  VF+++   +V++W ++I    M G+ 
Sbjct: 289 HLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKA 348

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
            D     S+M   G+ P  + ++++LSACSHAGL++EGR +F  M     L P+IEH+ C
Sbjct: 349 NDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGC 408

Query: 442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501
           +VDLLGRAG +EEA +LI  MPM+P++ IW +L+ A  ++ N+ IG+ AA+ +  +AP+ 
Sbjct: 409 MVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHD 468

Query: 502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           SG YV LSN+YA +G W  V  VR  M    I+K PG S
Sbjct: 469 SGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCS 507


>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 177/545 (32%), Positives = 294/545 (53%), Gaps = 46/545 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +K+HA I+     H +  +   L+  Y  CG M   R VFDE+  +NVV +  L+  YV+
Sbjct: 89  QKIHAHIV-KTGAHKDAFLMTFLVNVYAKCGTMETARKVFDELPRRNVVSWTTLMTGYVH 147

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +     A+ V++ M   G  P  YT    L A S  +S  +G QIH   +K  ++++   
Sbjct: 148 DSKPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHSKELGKQIHGYSIKYRIEFDASI 207

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR-------FDEALDVCR 220
           GN L ++Y KCG L+ A +    +  K+V++W ++++ +  NG        F E L  C 
Sbjct: 208 GNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECV 267

Query: 221 E---------------MESLRIKPDADTMASLLPSVTNTSPENVL-----------SVKE 254
           E               M+SL I     ++   L   +N   +N +             K+
Sbjct: 268 EPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKK 327

Query: 255 MFLKLDNKNLVSWNVMIAV------YANNSMPA-----EAVDLYLQMEVHGIEPNAISVA 303
           +F +++  +LV+WN MIA       +A + + A     EA+ ++L++   G++P+  + +
Sbjct: 328 LFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFS 387

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           SVL  C  L AL  G ++H    +     ++ +  ALV+MY KCGS+  A   F +M  +
Sbjct: 388 SVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVEMSIR 447

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
            ++SWTSMI+ Y  +GQ   A+ LF  M ++G+ P+ I FV VLSACSHAG+++E   YF
Sbjct: 448 TLISWTSMITGYAQNGQPQQALLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALDYF 507

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
           ++M  +YK+ P ++H+ACL+D+  R G+++EA+D IK+M +EPNE IW  L+A C     
Sbjct: 508 QMMKNEYKITPVMDHYACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGK 567

Query: 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VE 542
           +++G  AA+ + +L P  +  Y LL N+Y  AG+W +V RVRK M  + + ++   S + 
Sbjct: 568 LELGFYAAEQLLNLKPKDTETYNLLLNMYLSAGKWKEVSRVRKMMKEEKLGRLKDWSWIS 627

Query: 543 MNDQV 547
           + D++
Sbjct: 628 IKDKI 632



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 179/376 (47%), Gaps = 45/376 (11%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           Y  +L+ C     +    +IH  +VK G   + F    LV +Y KCG ++ AR+V +++P
Sbjct: 72  YVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKCGTMETARKVFDELP 131

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV--- 249
            ++VV+W +++ GY  + + + A+ V REM      P   T+ + L + ++   + +   
Sbjct: 132 RRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHSKELGKQ 191

Query: 250 ---LSVK---------------------------EMFLKLDNKNLVSWNVMIAVYANNSM 279
               S+K                           + F ++ +KN++SW  +I+ + +N  
Sbjct: 192 IHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGE 251

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
            A  +  +++M    +EPN  ++ S L  C  + +L +G +IH    +   + NL ++N+
Sbjct: 252 AATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNS 311

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ-----------GYDAVALF 388
           ++ +Y KCG + EA+ +FD+M    +V+W +MI+ +                G +A+++F
Sbjct: 312 IMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIF 371

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
            K+  SG+ PD   F SVLS CS    LE+G       T +   +  +     LV++  +
Sbjct: 372 LKLNRSGMKPDLFTFSSVLSVCSSLVALEQGE-QVHAQTIKTGFLSDVVVGTALVNMYNK 430

Query: 449 AGKVEEAYDLIKQMPM 464
            G +E A     +M +
Sbjct: 431 CGSIERASKAFVEMSI 446



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 43/221 (19%)

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           +L  C D   +   +KIH ++ +     +  L   LV++YAKCG++  AR VFD++  ++
Sbjct: 75  ILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKCGTMETARKVFDELPRRN 134

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
           VVSWT++++ Y    +   AV +F +ML +G  P +    + LSA S     E G+    
Sbjct: 135 VVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHSKELGK---- 190

Query: 425 IMTEQYKLVPRIEHFA----CLVDLLGRAGKVEEAYDLIKQMP----------------- 463
                Y +  RIE  A     L  L  + G +E A    +++                  
Sbjct: 191 -QIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDN 249

Query: 464 -----------------MEPNERIWGSLVAACCLYSNMDIG 487
                            +EPNE    S ++ CC+  ++DIG
Sbjct: 250 GEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIG 290


>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g08510-like [Glycine max]
          Length = 474

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/475 (33%), Positives = 266/475 (56%), Gaps = 41/475 (8%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLY-YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
           V    +   +  +N LI++Y ++  + +    +Y  + +HGF P+ +T+  +  AC+  +
Sbjct: 2   VLHHSSKPTLFLYNKLIQAYSSHPQHQHRCFSLYSQIRLHGFLPNQHTFNFLFSACTSLS 61

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
           S  +G  +H   +K G + +LF    L+ MY K G L+ AR++ ++MP + V  WN+M+A
Sbjct: 62  SSSLGQMLHTHFIKSGFEPDLFAATALLDMYAKVGALELARKLFDEMPVRGVPRWNAMMA 121

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL 264
           G A+ G  D AL                                     E+F  + ++N+
Sbjct: 122 GLARFGDMDGAL-------------------------------------ELFXSMPSRNV 144

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVASVLPACGDLSALLLGRKIHR 323
           V W  MI+ Y+ N    +A+ L+L ME   GI PNA+++ S+LPAC +L AL +G+++  
Sbjct: 145 VPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNAVTLVSILPACANLXALEIGQRVEA 204

Query: 324 YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM-RCQDVVSWTSMISAYGMSGQGY 382
           Y  +     N    NA+++MY KCG +  A  VF+++   +++ SW SM+    + G+  
Sbjct: 205 YARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFNEIGSLRNLCSWNSMVVGLAVHGECC 264

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL 442
            A+ L+ +ML  G  PD + FV +L AC+  G++++GR+ FK  T  + ++P++EH+ C+
Sbjct: 265 KALELYDQMLGEGTSPDDVTFVGLLLACTQGGMVKKGRHIFKSKTTSFYIIPKLEHYGCM 324

Query: 443 VDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS 502
           VDLLGRAG++ EAY++I+ M M+P+  IWG+L+ AC  + N+++  +AA+ +F L P   
Sbjct: 325 VDLLGRAGQLREAYEVIQSMSMKPDSVIWGALLGACSFHGNVELAEIAAESLFVLEPWNP 384

Query: 503 GYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           G YV+LSNIYA AG+W  V ++RK M    I K  G S +E   Q+    +  RS
Sbjct: 385 GNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIEEGAQLHKFIVKDRS 439



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 10/238 (4%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCV 136
           G M     +F  + ++NVV +  +I  Y  N  Y  AL ++  M    G  P+  T   +
Sbjct: 127 GDMDGALELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNAVTLVSI 186

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS-KD 195
           L AC+   +L +G ++     K G   N +  N ++ MY KCG +  A RV N++ S ++
Sbjct: 187 LPACANLXALEIGQRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFNEIGSLRN 246

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN----TSPENVLS 251
           + +WNSMV G A +G   +AL++  +M      PD  T   LL + T         ++  
Sbjct: 247 LCSWNSMVVGLAVHGECCKALELYDQMLGEGTSPDDVTFVGLLLACTQGGMVKKGRHIFK 306

Query: 252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            K     +  K L  +  M+ +        EA ++   M    ++P+++   ++L AC
Sbjct: 307 SKTTSFYIIPK-LEHYGCMVDLLGRAGQLREAYEVIQSMS---MKPDSVIWGALLGAC 360



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 3/149 (2%)

Query: 70  LMRTYGACGQMVDTRHVFDEITN-KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
           ++  Y  CG++     VF+EI + +N+  +N ++     +     AL +Y  M   G  P
Sbjct: 221 VLEMYVKCGKIDAAWRVFNEIGSLRNLCSWNSMVVGLAVHGECCKALELYDQMLGEGTSP 280

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCS-VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           D  T+  +L AC+    +  G  I  S      +   L +   +V + G+ G L+EA  V
Sbjct: 281 DDVTFVGLLLACTQGGMVKKGRHIFKSKTTSFYIIPKLEHYGCMVDLLGRAGQLREAYEV 340

Query: 188 LNDMPSK-DVVTWNSMVAGYAQNGRFDEA 215
           +  M  K D V W +++   + +G  + A
Sbjct: 341 IQSMSMKPDSVIWGALLGACSFHGNVELA 369


>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Vitis vinifera]
          Length = 573

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 172/525 (32%), Positives = 285/525 (54%), Gaps = 51/525 (9%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYG-ACGQMVDTRHVFDEITNKNV 95
           +L++   +  LK+L A +I   H  ++     KL+R    A   +   R +FD + + NV
Sbjct: 61  LLERCIHLNHLKQLQAFLITLGHAQTH-FYAFKLLRFCTLALSNLSYARFIFDHVESPNV 119

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD-PDCYTYPCVLKACSGSNSLLVGLQIHC 154
             +  +I +Y ++  +  AL +Y+NM       P+ + YP VLK+C+          +HC
Sbjct: 120 YLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCTQVVGPGSARMVHC 179

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGC-LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
            V++ G +        L+  Y +    ++ AR + ++M  ++VV+W +M++GY + G+  
Sbjct: 180 QVLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTERNVVSWTAMISGYTRLGQIG 239

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273
            A+ +  EM                       PE              +++ SWN +IA 
Sbjct: 240 NAVLLFEEM-----------------------PE--------------RDVPSWNALIAG 262

Query: 274 YANNSMPAEAVDLYLQMEV-------HGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           Y  N +  EA+ L+ +M          G  PN ++    L ACG    L LG+ IH YV 
Sbjct: 263 YTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVY 322

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           R  L  +  + NALVDMY KCG L EAR VFD+   + + SW SMI+   + GQ  +A++
Sbjct: 323 RNGLGLDSFVSNALVDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAIS 382

Query: 387 LFSKMLM--SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           +F +M+   SG+ PD + F+ +L+AC+H GL+E+G  YF++MT+ Y + P+IEH+ CLVD
Sbjct: 383 VFEEMMTCGSGVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVD 442

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY 504
           LLGRAG+ EEA ++++ M +EP+E IWGSL+  C ++ + D+   +   +  + PN  GY
Sbjct: 443 LLGRAGQFEEAMEVVRGMRIEPDEVIWGSLLNGCKIHGHTDLAEFSIKKLIDMDPNNGGY 502

Query: 505 YVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            ++L+NIY + G+W +V++VRK +  +   K PG S +E+++QV 
Sbjct: 503 GIMLANIYGELGKWDEVRKVRKVLKEQNAHKTPGCSWIEIDNQVH 547


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 171/510 (33%), Positives = 278/510 (54%), Gaps = 36/510 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G + + R VFD +  KN + +N L+ +YV+N    +A  ++++ S    D D
Sbjct: 148 LLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKS----DWD 203

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSV-VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
             ++ C++        L     +   + V+  + +N      +++ Y + G L +ARR+ 
Sbjct: 204 LISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNT-----MISGYAQGGGLSQARRLF 258

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPDA-----------DTMAS 236
           ++ P++DV TW +MV+GY QNG  DEA     EM E   +  +A           D    
Sbjct: 259 DESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARE 318

Query: 237 LLPSV--TNTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
           L  S+   N S  N +             ++ F  +  ++ VSW  +IA YA +    EA
Sbjct: 319 LFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEA 378

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
           ++++++++  G   N  +    L  C D++AL LG++IH    +        + NAL+ M
Sbjct: 379 LNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAM 438

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
           Y KCGS+ EA   F+ +  +DVVSW +M++ Y   G G  A+ +F  M  +G+ PD I  
Sbjct: 439 YFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITM 498

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           V VLSACSH GLL+ G  YF  MT+ Y ++P  +H+ C++DLLGRAG++EEA DLI+ MP
Sbjct: 499 VGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMP 558

Query: 464 MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKR 523
            +P    WG+L+ A  ++ N ++G  AA+ +F + P  SG YVLLSN+YA +GRW D  +
Sbjct: 559 FQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADK 618

Query: 524 VRKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
           +R  M   G++K+PG S VE+ +++   ++
Sbjct: 619 MRSKMRDIGVQKVPGYSWVEVQNKIHTFSV 648



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/464 (22%), Positives = 188/464 (40%), Gaps = 103/464 (22%)

Query: 69  KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
           K + T+   G      HVF+ +  ++ V +N +I  Y+ N  +  A +++  M     + 
Sbjct: 54  KAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP----ER 109

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D +++          N +L G   +C                          L +ARR+ 
Sbjct: 110 DLFSW----------NVMLTGYVRNCR-------------------------LGDARRLF 134

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES------------------------ 224
           + MP KDVV+WNS+++GYAQNG  DEA +V   M                          
Sbjct: 135 DLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACL 194

Query: 225 -LRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
               K D D ++           + +   + +F K+  ++ +SWN MI+ YA     ++A
Sbjct: 195 LFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQA 254

Query: 284 VDLYLQMEV---------------HGIEPNAISVASVLPACGDLS--ALLLGRKIHRYVE 326
             L+ +                  +G+   A +    +P   ++S  A++ G     YV+
Sbjct: 255 RRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAG-----YVQ 309

Query: 327 RKKLQ-----------PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
            KK+             N+   N ++  Y + G + +AR  FD M  +D VSW ++I+ Y
Sbjct: 310 TKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGY 369

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
             SG   +A+ +F ++   G   +   F   LS C+    LE G+   +I  +  K+   
Sbjct: 370 AQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGK---QIHGQAVKMGYG 426

Query: 436 IEHFA--CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
              F    L+ +  + G ++EA D  + +  E +   W +++A 
Sbjct: 427 TGCFVGNALLAMYFKCGSIDEANDTFEGIE-EKDVVSWNTMLAG 469



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 144/317 (45%), Gaps = 26/317 (8%)

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           D ++   N  ++ + + G    A  V N MP +  V++N+M++GY +N +F+ A ++  +
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
           M      P+ D  +  +          +   + +F  +  K++VSWN +++ YA N    
Sbjct: 106 M------PERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVD 159

Query: 282 EAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
           EA +++  M E + I  N +  A V     + + LL            K   +L   N L
Sbjct: 160 EAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF---------ESKSDWDLISWNCL 210

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +  + +   L +AR +FD+M  +D +SW +MIS Y   G    A  LF +        D 
Sbjct: 211 MGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE----SPTRDV 266

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
             + +++S     G+L+E + +F  M E+ ++      +  ++    +  K++ A +L +
Sbjct: 267 FTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEV-----SYNAMIAGYVQTKKMDIARELFE 321

Query: 461 QMPMEPNERIWGSLVAA 477
            MP   N   W +++  
Sbjct: 322 SMPCR-NISSWNTMITG 337



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 39/148 (26%)

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIW 471
           + GLL+ G  YF  M E+Y + P  +H+ C++DLLGR  ++EE                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 472 GSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531
           G+L+ A  ++ N ++G  AA   F + P  SG                 + ++R      
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSG-----------------ISKMRDV---- 857

Query: 532 GIKKMPGAS-VEMNDQVQIIALPLRSSK 558
           G++K+PG S  E+ +++   ++ L  S+
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSVGLFLSR 885



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 94/203 (46%), Gaps = 11/203 (5%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H Q +      +   +G  L+  Y  CG + +    F+ I  K+VV +N ++  Y  
Sbjct: 414 KQIHGQAV-KMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYAR 472

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +     AL V+++M   G  PD  T   VL ACS +  L  G +   S+ K   DY +  
Sbjct: 473 HGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTK---DYGVIP 529

Query: 168 GNG----LVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREM 222
            +     ++ + G+ G L+EA+ ++ +MP +    +W +++     +G   E  +   EM
Sbjct: 530 TSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGN-TELGEKAAEM 588

Query: 223 ESLRIKPDADTMASLLPSVTNTS 245
              +++P    M  LL ++   S
Sbjct: 589 -VFKMEPQNSGMYVLLSNLYAAS 610


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 171/510 (33%), Positives = 278/510 (54%), Gaps = 36/510 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G + + R VFD +  KN + +N L+ +YV+N    +A  ++++ S    D D
Sbjct: 148 LLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKS----DWD 203

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSV-VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
             ++ C++        L     +   + V+  + +N      +++ Y + G L +ARR+ 
Sbjct: 204 LISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNT-----MISGYAQGGGLSQARRLF 258

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPDA-----------DTMAS 236
           ++ P++DV TW +MV+GY QNG  DEA     EM E   +  +A           D    
Sbjct: 259 DESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARE 318

Query: 237 LLPSV--TNTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
           L  S+   N S  N +             ++ F  +  ++ VSW  +IA YA +    EA
Sbjct: 319 LFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEA 378

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
           ++++++++  G   N  +    L  C D++AL LG++IH    +        + NAL+ M
Sbjct: 379 LNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAM 438

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
           Y KCGS+ EA   F+ +  +DVVSW +M++ Y   G G  A+ +F  M  +G+ PD I  
Sbjct: 439 YFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITM 498

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           V VLSACSH GLL+ G  YF  MT+ Y ++P  +H+ C++DLLGRAG++EEA DLI+ MP
Sbjct: 499 VGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMP 558

Query: 464 MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKR 523
            +P    WG+L+ A  ++ N ++G  AA+ +F + P  SG YVLLSN+YA +GRW D  +
Sbjct: 559 FQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADK 618

Query: 524 VRKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
           +R  M   G++K+PG S VE+ +++   ++
Sbjct: 619 MRSKMRDIGVQKVPGYSWVEVQNKIHTFSV 648



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/464 (22%), Positives = 188/464 (40%), Gaps = 103/464 (22%)

Query: 69  KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
           K + T+   G      HVF+ +  ++ V +N +I  Y+ N  +  A +++  M     + 
Sbjct: 54  KAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP----ER 109

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D +++          N +L G   +C                          L +ARR+ 
Sbjct: 110 DLFSW----------NVMLTGYVRNCR-------------------------LGDARRLF 134

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES------------------------ 224
           + MP KDVV+WNS+++GYAQNG  DEA +V   M                          
Sbjct: 135 DLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACL 194

Query: 225 -LRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
               K D D ++           + +   + +F K+  ++ +SWN MI+ YA     ++A
Sbjct: 195 LFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQA 254

Query: 284 VDLYLQMEV---------------HGIEPNAISVASVLPACGDLS--ALLLGRKIHRYVE 326
             L+ +                  +G+   A +    +P   ++S  A++ G     YV+
Sbjct: 255 RRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAG-----YVQ 309

Query: 327 RKKLQ-----------PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
            KK+             N+   N ++  Y + G + +AR  FD M  +D VSW ++I+ Y
Sbjct: 310 TKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGY 369

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
             SG   +A+ +F ++   G   +   F   LS C+    LE G+   +I  +  K+   
Sbjct: 370 AQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGK---QIHGQAVKMGYG 426

Query: 436 IEHFA--CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
              F    L+ +  + G ++EA D  + +  E +   W +++A 
Sbjct: 427 TGCFVGNALLAMYFKCGSIDEANDTFEGIE-EKDVVSWNTMLAG 469



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 144/317 (45%), Gaps = 26/317 (8%)

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           D ++   N  ++ + + G    A  V N MP +  V++N+M++GY +N +F+ A ++  +
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
           M      P+ D  +  +          +   + +F  +  K++VSWN +++ YA N    
Sbjct: 106 M------PERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVD 159

Query: 282 EAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
           EA +++  M E + I  N +  A V     + + LL            K   +L   N L
Sbjct: 160 EAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF---------ESKSDWDLISWNCL 210

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +  + +   L +AR +FD+M  +D +SW +MIS Y   G    A  LF +        D 
Sbjct: 211 MGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE----SPTRDV 266

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
             + +++S     G+L+E + +F  M E+ ++      +  ++    +  K++ A +L +
Sbjct: 267 FTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEV-----SYNAMIAGYVQTKKMDIARELFE 321

Query: 461 QMPMEPNERIWGSLVAA 477
            MP   N   W +++  
Sbjct: 322 SMPCR-NISSWNTMITG 337



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 94/203 (46%), Gaps = 11/203 (5%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H Q +      +   +G  L+  Y  CG + +    F+ I  K+VV +N ++  Y  
Sbjct: 414 KQIHGQAV-KMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYAR 472

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           +     AL V+++M   G  PD  T   VL ACS +  L  G +   S+ K   DY +  
Sbjct: 473 HGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTK---DYGVIP 529

Query: 168 GNG----LVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREM 222
            +     ++ + G+ G L+EA+ ++ +MP +    +W +++     +G   E  +   EM
Sbjct: 530 TSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGN-TELGEKAAEM 588

Query: 223 ESLRIKPDADTMASLLPSVTNTS 245
              +++P    M  LL ++   S
Sbjct: 589 -VFKMEPQNSGMYVLLSNLYAAS 610


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 165/452 (36%), Positives = 256/452 (56%), Gaps = 35/452 (7%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           Y  ++ AC+   SL     IH  +       ++F  N L+ +Y KCG + +ARRV + MP
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV--- 249
           ++D+ +W S++AGYAQN   DEAL +   M   R KP+  T ASLL +   ++   +   
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 250 ---LSVK---------------------------EMFLKLDNKNLVSWNVMIAVYANNSM 279
              L+VK                            +F +L++KN VSWN +IA +A    
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
               + ++ +M+ +G E    + +SV  A   + AL  G+ +H ++ +   + +  + N 
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNT 306

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           ++DMYAK GS+ +AR VFD++  +DVV+W SM++A+   G G +AV  F +M   G+  +
Sbjct: 307 ILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLN 366

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
            I F+S+L+ACSH GL++EG+ YF +M E Y L P I+H+  +VDLLGRAG + +A   I
Sbjct: 367 QITFLSILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFI 425

Query: 460 KQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519
            +MPM+P   +WG+L+ +C ++ N  IG  AADH+F L P+ +G  VLL NIYA  G+W 
Sbjct: 426 FKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWD 485

Query: 520 DVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
              RVRK M + G+KK P  S VE+ + V + 
Sbjct: 486 AAARVRKMMKATGVKKEPACSWVEIENSVHMF 517



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 160/347 (46%), Gaps = 34/347 (9%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           +Y  +   + +HA +  +Q    +  +   L+  Y  CG + D R VFD +  +++  + 
Sbjct: 76  RYRSLDDARAIHAHLAGSQ-FAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWT 134

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            LI  Y  N +  +AL +   M    F P+ +T+  +LKA   S S  +G QIH   VK 
Sbjct: 135 SLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKY 194

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
               +++ G+ L+ MY +CG +  A  V + + SK+ V+WN+++AG+A+ G  +  L + 
Sbjct: 195 DWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMF 254

Query: 220 REMESLRIKPDADTMASLLPSVTN---------------------------------TSP 246
            EM+    +    T +S+  ++                                      
Sbjct: 255 AEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKS 314

Query: 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
            +++  +++F ++D K++V+WN M+  +A   +  EAV  + +M   G+  N I+  S+L
Sbjct: 315 GSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSIL 374

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
            AC     +  G++    ++   L+P +     +VD+  + G L +A
Sbjct: 375 TACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDA 421


>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
 gi|194704572|gb|ACF86370.1| unknown [Zea mays]
 gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
          Length = 700

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 161/498 (32%), Positives = 275/498 (55%), Gaps = 68/498 (13%)

Query: 68  LKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD 127
           + L+  Y   G++ D R +FD +  +NVV +NV++  YV+     +A  ++  M +    
Sbjct: 239 VTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMPI---- 294

Query: 128 PDCYTYPCVLKACS------GSNSLLVGLQIHCSVVKVGLDYN------------LFNG- 168
            +  ++  ++   +       +  LL  +  +C   K  L +             +F+G 
Sbjct: 295 KNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADDARRIFDGM 354

Query: 169 --------NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
                   N +++ Y +CG L+EA  +   MP+KD+V+WN+M+AGYAQ+G+  +A+ +  
Sbjct: 355 EVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDGQMHKAIGI-- 412

Query: 221 EMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                                              F +++ +N VSWN +I+ +  N   
Sbjct: 413 -----------------------------------FRRMNRRNTVSWNSVISGFVQNDRF 437

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            +A+  ++ M       +  + AS L AC +L+ L +GR++H  + R     +    NAL
Sbjct: 438 VDALHHFMLMRRGTNRADWSTYASCLRACANLAVLHVGRQLHNLLVRSGHINDSFAGNAL 497

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +  YAKCG + EA+ +FD+M  +D+VSW ++I  Y  +GQG +A+A+F +M  +G+ PD 
Sbjct: 498 ISTYAKCGRILEAKQIFDEMVYKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDE 557

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           + FV +LSACSHAGL++EG ++F  MT++Y L P  EH+AC+VDLLGRAGK+ EA++L++
Sbjct: 558 VTFVGILSACSHAGLIDEGLFFFYSMTKEYLLKPVAEHYACMVDLLGRAGKLNEAFELVQ 617

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD 520
            M ++PN  +WG+L+ AC ++ N ++  LAA+ +  L P ++  YVLLSNI A+AG+W +
Sbjct: 618 GMQIQPNAGVWGALLGACHMHKNHELAQLAAERLSELEPRKASNYVLLSNISAEAGKWDE 677

Query: 521 VKRVRKFMNSKGIKKMPG 538
            ++ R  +  KG+ K PG
Sbjct: 678 SEKARASIKEKGVNKPPG 695



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 190/435 (43%), Gaps = 71/435 (16%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           GQ+   R +FD +  +N V +N ++ +   +    +A  ++  M      P   T     
Sbjct: 32  GQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGM------PGRNTVSW-- 83

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNL------FNGNGLVAMYGKCGCLKEARRVLNDM 191
                 N+++  L  H  V      ++       F+   +V+ Y + G L+ AR VL+ M
Sbjct: 84  ------NAMIAALSDHGRVADARSLFDRMPVRDEFSWTVMVSCYARGGDLELARDVLDRM 137

Query: 192 PS-KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL 250
           P  K    +N+M++GYA+NGRFD+A+ + REM +    PD  +  S L  +T  S E V 
Sbjct: 138 PGDKCTACYNAMISGYAKNGRFDDAMKLLREMPA----PDLVSWNSALAGLTQ-SGEMVR 192

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
           +V+  F     K++ SWN+M+A +        A   + ++E     PN IS  ++L    
Sbjct: 193 AVQ--FFDEMVKDMTSWNLMLAGFVRTGDLNAASSFFAKIE----SPNVISWVTLLNGYC 246

Query: 311 DLSALLLGRKI-HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
               +   R +  R  ER     N+   N ++D Y     + EA  +FD+M  ++ +SWT
Sbjct: 247 RAGRIADARDLFDRMPER-----NVVAWNVMLDGYVHLSPIEEACKLFDEMPIKNSISWT 301

Query: 370 SMISAYGMSGQGYDAVALFSKM----------LMSGLCP-----------------DSIA 402
           ++IS    +G+  +A  L  KM          LM G                    D++ 
Sbjct: 302 TIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADDARRIFDGMEVHDTVC 361

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           + +++S     G+LEE    F+ M  +      +  +  ++    + G++ +A  + ++M
Sbjct: 362 WNTMISGYVQCGILEEAMLLFQRMPNK-----DMVSWNTMIAGYAQDGQMHKAIGIFRRM 416

Query: 463 PMEPNERIWGSLVAA 477
               N   W S+++ 
Sbjct: 417 N-RRNTVSWNSVISG 430



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 138/331 (41%), Gaps = 65/331 (19%)

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           F  N  +    + G L  ARR+ + MP ++ VT+N+M++  A++GR DEA          
Sbjct: 19  FRSNKELTRLARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEA---------- 68

Query: 226 RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285
                                      + +F  +  +N VSWN MIA  +++   A+A  
Sbjct: 69  ---------------------------RALFDGMPGRNTVSWNAMIAALSDHGRVADARS 101

Query: 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
           L+ +M V   E +   + S     GDL    L R +   ++R          NA++  YA
Sbjct: 102 LFDRMPVRD-EFSWTVMVSCYARGGDLE---LARDV---LDRMPGDKCTACYNAMISGYA 154

Query: 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
           K G   +A  +  +M   D+VSW S ++    SG+   AV  F +M+      D  ++  
Sbjct: 155 KNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEMV-----KDMTSWNL 209

Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME 465
           +L+     G L     +F  +       P +  +  L++   RAG++ +A DL  +MP E
Sbjct: 210 MLAGFVRTGDLNAASSFFAKIES-----PNVISWVTLLNGYCRAGRIADARDLFDRMP-E 263

Query: 466 PNERIWGSLV----------AACCLYSNMDI 486
            N   W  ++           AC L+  M I
Sbjct: 264 RNVVAWNVMLDGYVHLSPIEEACKLFDEMPI 294



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 79/145 (54%), Gaps = 2/145 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LH  ++ + H++ + + G  L+ TY  CG++++ + +FDE+  K++V +N LI  Y +
Sbjct: 476 RQLHNLLVRSGHINDSFA-GNALISTYAKCGRILEAKQIFDEMVYKDIVSWNALIDGYAS 534

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    +A+ V++ M  +G  PD  T+  +L ACS +  +  GL    S+ K  L   +  
Sbjct: 535 NGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGLIDEGLFFFYSMTKEYLLKPVAE 594

Query: 168 GNG-LVAMYGKCGCLKEARRVLNDM 191
               +V + G+ G L EA  ++  M
Sbjct: 595 HYACMVDLLGRAGKLNEAFELVQGM 619



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 22/194 (11%)

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
           NA++   A+ G + EAR +FD M  ++ VSW +MI+A    G+  DA +LF +M +    
Sbjct: 53  NAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFDRMPVR--- 109

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC---LVDLLGRAGKVEE 454
            D  ++  ++S  +  G LE  R     M       P  +  AC   ++    + G+ ++
Sbjct: 110 -DEFSWTVMVSCYARGGDLELARDVLDRM-------PGDKCTACYNAMISGYAKNGRFDD 161

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A  L+++MP  P+   W S +A       M   + A      +  + + + ++L+     
Sbjct: 162 AMKLLREMP-APDLVSWNSALAGLTQSGEM---VRAVQFFDEMVKDMTSWNLMLAGFV-- 215

Query: 515 AGRWGDVKRVRKFM 528
             R GD+     F 
Sbjct: 216 --RTGDLNAASSFF 227


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 169/470 (35%), Positives = 262/470 (55%), Gaps = 35/470 (7%)

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
           LH   ++      P    Y   + AC+ S +L    +IH  +       + F  N L+ +
Sbjct: 36  LHDLDHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHL 95

Query: 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
           Y KCG + EA +V + M +KD+V+W S++AGYAQN    EA+ +   M   R KP+  T 
Sbjct: 96  YCKCGSVVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTF 155

Query: 235 ASLLPSVTNTSPENV------LSVK---------------------------EMFLKLDN 261
           ASLL +V   +   +      L+VK                            +F KLD+
Sbjct: 156 ASLLKAVGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDS 215

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           KN VSWN +I+ +A       A+ ++ +M+ +G E    + +S+  A   + AL  G+ +
Sbjct: 216 KNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWV 275

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
           H ++ + + +    + N ++DMYAK GS+ +AR VF+++  +D+V+W SM++A+   G G
Sbjct: 276 HAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLG 335

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
            +AV+ F +M  SG+  + I+F+ +L+ACSH GL++EG++YF  M ++Y L P IEH+  
Sbjct: 336 KEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVT 394

Query: 442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501
           +VDLLGRAG +  A   I +MPMEP   +WG+L+AAC ++ N  +G  AADH+F L P+ 
Sbjct: 395 VVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDD 454

Query: 502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           SG  VLL NIYA  G W    RVRK M + G+KK P  S VE+ + V + 
Sbjct: 455 SGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIENSVHMF 504



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 168/361 (46%), Gaps = 35/361 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +K+HA +  +     +  +   L+  Y  CG +V+   VFD++ NK++V +  LI  Y  
Sbjct: 71  RKIHAHLA-SSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNKDMVSWTSLIAGYAQ 129

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N +  +A+ +   M    F P+ +T+  +LKA        +G QIH   VK     +++ 
Sbjct: 130 NDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGGQIHALAVKCDWHEDVYV 189

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           G+ L+ MY +CG +  A  V + + SK+ V+WN++++G+A+ G  + AL V  EM+    
Sbjct: 190 GSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGF 249

Query: 228 KPDADTMASLLPS---------------------------VTNT------SPENVLSVKE 254
           +    T +S+  +                           V NT         +++  ++
Sbjct: 250 EATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARK 309

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F ++ NK+LV+WN M+  +A   +  EAV  + +M   GI  N IS   +L AC     
Sbjct: 310 VFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGL 369

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTSMIS 373
           +  G+     ++   L+P +     +VD+  + G L  A     +M  +   + W ++++
Sbjct: 370 VKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLA 429

Query: 374 A 374
           A
Sbjct: 430 A 430



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 1/183 (0%)

Query: 41  YPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           Y D     ++HA + +    H +  +G  L+  Y  CG+M     VFD++ +KN V +N 
Sbjct: 165 YADSGIGGQIHA-LAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNA 223

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           LI  +        AL V+  M  +GF+   +TY  +  A +G  +L  G  +H  ++K  
Sbjct: 224 LISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSR 283

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
                F GN ++ MY K G + +AR+V   + +KD+VTWNSM+  +AQ G   EA+    
Sbjct: 284 QKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFE 343

Query: 221 EME 223
           EM 
Sbjct: 344 EMR 346


>gi|356545955|ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Glycine max]
          Length = 667

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 161/494 (32%), Positives = 271/494 (54%), Gaps = 39/494 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H  +I+ + L+S+  +   L+  Y  C ++   RHVFD ++ +++V +N +I  Y  
Sbjct: 159 KEVHC-LILRRGLYSDIFVLNALITCYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYSQ 217

Query: 108 NYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
             LY +   +Y  M +V    P+  T   V++AC  S  L  G+++H  V + G++ ++ 
Sbjct: 218 RRLYDECKRLYLEMLNVSAVAPNVVTAVSVMQACGQSMDLAFGMELHRFVKESGIEIDVS 277

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
             N +VAMY KCG L  AR +   M  KD VT+ ++++GY   G  D+A+ V R +E   
Sbjct: 278 LSNAVVAMYAKCGRLDYAREMFEGMREKDEVTYGAIISGYMDYGLVDDAMGVFRGVE--- 334

Query: 227 IKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
                                             N  L  WN +I+    N       DL
Sbjct: 335 ----------------------------------NPGLNMWNAVISGMVQNKQFEGVFDL 360

Query: 287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
             QM+  G+ PNA+++AS+LP+    S L  G+++H Y  R+  + N+ +  +++D Y K
Sbjct: 361 VRQMQGSGLSPNAVTLASILPSFSYFSNLRGGKEVHGYAIRRGYEQNVYVSTSIIDAYGK 420

Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
            G +  AR VFD  + + ++ WTS+ISAY   G    A+ L+++ML  G+ PD +   SV
Sbjct: 421 LGCICGARWVFDLSQSRSLIIWTSIISAYAAHGDAGLALGLYAQMLDKGIRPDPVTLTSV 480

Query: 407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP 466
           L+AC+H+GL++E    F  M  +Y + P +EH+AC+V +L RAGK+ EA   I +MP+EP
Sbjct: 481 LTACAHSGLVDEAWNIFNSMPSKYGIQPLVEHYACMVGVLSRAGKLSEAVQFISEMPIEP 540

Query: 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526
           + ++WG L+    ++ +++IG  A DH+F + P  +G Y++++N+YA AG+W     VR+
Sbjct: 541 SAKVWGPLLHGASVFGDVEIGKFACDHLFEIEPENTGNYIIMANLYAHAGKWEQAGEVRE 600

Query: 527 FMNSKGIKKMPGAS 540
            M   G++K+ G+S
Sbjct: 601 RMKVIGLQKIRGSS 614



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 190/436 (43%), Gaps = 85/436 (19%)

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D   Y   L+ CS    L  G Q+H  ++ + +  + F  + L+  Y K      AR+V 
Sbjct: 33  DFAAYGSALQHCSDHRLLRQGKQLHARLILLSVTPDNFLASKLILFYSKSNHAHFARKVF 92

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM---ESLRIKPDADTMASLLPSVTNT- 244
           +  P ++  TWN+M+ GY+ N  F  AL++        +    PD  T++ +L ++ ++ 
Sbjct: 93  DTTPHRNTFTWNAMLLGYSFNSMFRHALNLFGSFTFSTTPNASPDNFTISCVLKALASSF 152

Query: 245 -SPE--------------------------------NVLSVKEMFLKLDNKNLVSWNVMI 271
            SPE                                 V   + +F  +  +++V+WN MI
Sbjct: 153 CSPELAKEVHCLILRRGLYSDIFVLNALITCYCRCDEVWLARHVFDGMSERDIVTWNAMI 212

Query: 272 AVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
             Y+   +  E   LYL+M  V  + PN ++  SV+ ACG    L  G ++HR+V+   +
Sbjct: 213 GGYSQRRLYDECKRLYLEMLNVSAVAPNVVTAVSVMQACGQSMDLAFGMELHRFVKESGI 272

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF-- 388
           + ++ L NA+V MYAKCG L  AR +F+ MR +D V++ ++IS Y   G   DA+ +F  
Sbjct: 273 EIDVSLSNAVVAMYAKCGRLDYAREMFEGMREKDEVTYGAIISGYMDYGLVDDAMGVFRG 332

Query: 389 -----------------------------SKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
                                         +M  SGL P+++   S+L + S+   L  G
Sbjct: 333 VENPGLNMWNAVISGMVQNKQFEGVFDLVRQMQGSGLSPNAVTLASILPSFSYFSNLRGG 392

Query: 420 R----YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA---YDLIKQMPMEPNERIWG 472
           +    Y  +   EQ   V        ++D  G+ G +  A   +DL +   +     IW 
Sbjct: 393 KEVHGYAIRRGYEQNVYVS-----TSIIDAYGKLGCICGARWVFDLSQSRSL----IIWT 443

Query: 473 SLVAACCLYSNMDIGI 488
           S+++A   + +  + +
Sbjct: 444 SIISAYAAHGDAGLAL 459


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 163/500 (32%), Positives = 263/500 (52%), Gaps = 52/500 (10%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           ++A+II N H H +P +  +L+R       +     +F    N NV  +  LI   V + 
Sbjct: 51  IYAKIIRNHH-HQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSC 109

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
            Y D +H+Y  M      PD Y    VLKAC    +L  G ++H  V+K+GL  N     
Sbjct: 110 YYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRI 169

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            L+ +YGKCG  ++ARRV ++MP +DVV    M+  Y     FD  +             
Sbjct: 170 KLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYY-----FDHGI------------- 211

Query: 230 DADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
                                           K+ V W  MI     N     A++++  
Sbjct: 212 --------------------------------KDTVCWTAMIDGLVRNGESNRALEVFRN 239

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M+   + PN +++  VL AC +L AL LGR +  Y+++ +++ N  +  AL++MY++CG 
Sbjct: 240 MQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGD 299

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           + EA+ VF+QM+ ++V+++ SMI  + + G+  +AV LF  ++  G  P S+ FV VL+A
Sbjct: 300 IDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNA 359

Query: 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNER 469
           CSH GL E G   F  M + Y + P+IEH+ C+VDLLGR G++EEAY  I+ M + P+  
Sbjct: 360 CSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHV 419

Query: 470 IWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529
           + G+L++AC ++ N+++    A  +       SG Y+LLSN Y+ +G+W +   VR  M 
Sbjct: 420 MLGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMR 479

Query: 530 SKGIKKMPG-ASVEMNDQVQ 548
            +GI+K PG +S+E+N+++ 
Sbjct: 480 EEGIEKEPGCSSIEVNNEIH 499


>gi|347954470|gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
          Length = 811

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 169/498 (33%), Positives = 278/498 (55%), Gaps = 8/498 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+ HA  I+N  L  +  +G  L+  Y   G +     VFD + +K+VV +N+LI  YV 
Sbjct: 274 KQSHAIAIVNG-LELDNILGTSLLNFYCKVGLIEYAEMVFDRMFDKDVVTWNLLISGYVQ 332

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
             L  DA+++ + M +     DC T   ++ A + + +L  G ++ C  ++  LD ++  
Sbjct: 333 QGLVEDAIYMSQLMRLEKLKYDCVTLSTLMSAAARTENLKFGKEVQCYCIRHSLDTDIVL 392

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            +  + MY KCG + +A++V +    KD++ WN+++A YAQ+G   EAL +  EM+   +
Sbjct: 393 ASTTMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAQSGLSGEALRLFYEMQLESV 452

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK----NLVSWNVMIAVYANNSMPAEA 283
            P+  T   ++ S+      N    KEMFL++ +     NL+SW  M+     N    EA
Sbjct: 453 PPNVITWNLIILSLLRNGEVN--EAKEMFLQMQSSGISPNLISWTTMMNGMVQNGCSEEA 510

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVD 342
           +    +M+  G+ PNA S+   L A  +L++L  GR IH Y+ R  +   ++ +E +LVD
Sbjct: 511 ILFLRKMQESGLRPNAFSITVALSASANLASLHFGRSIHGYIIRNLRHSSSVSIETSLVD 570

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MYAKCG + +A  VF      ++  + +MISAY + G   +A+AL+  +   G+ PDS+ 
Sbjct: 571 MYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAIALYRSLEDMGIKPDSVT 630

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           F S+LSAC+HAG +++    F  M  ++ + P +EH+  +VDLL  AG+ E+A  LI++M
Sbjct: 631 FTSLLSACNHAGDIDQAVGVFTAMVLKHGMTPCLEHYGLMVDLLASAGETEKAIRLIEEM 690

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
           P +P+ R+  SLVA+C      ++    + H+    P  SG YV +SN YA  G W +V 
Sbjct: 691 PYKPDARMIQSLVASCNKQHKTELVEYLSRHLLESEPENSGNYVTISNAYAVEGSWDEVV 750

Query: 523 RVRKFMNSKGIKKMPGAS 540
           ++R+ M +KG+KK PG S
Sbjct: 751 KMREMMKAKGLKKKPGCS 768



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 131/534 (24%), Positives = 258/534 (48%), Gaps = 43/534 (8%)

Query: 43  DIKTLKKLHAQIIINQHLHS-NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           D+ T K++HA+I+ N   ++ N  I  KL+  Y  C  +     +F ++  +NV  +  +
Sbjct: 65  DLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEXAEVIFSKLRVRNVFSWAAI 124

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           I       L   AL  +  M  +   PD +  P V KAC        G  +H  V+K GL
Sbjct: 125 IGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVIKAGL 184

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           +  +F  + L  MYGKCG L +AR+V +++P ++VV WN+++ GY QNG  +EA+ +  +
Sbjct: 185 EDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSD 244

Query: 222 MESLRIKPDADTMASLLPSVTNT------------------SPENVLSVK---------- 253
           M    ++P   T+++ L +  N                     +N+L             
Sbjct: 245 MRKEGVEPTRVTVSTCLSASANMVGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGL 304

Query: 254 ----EM-FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
               EM F ++ +K++V+WN++I+ Y    +  +A+ +   M +  ++ + +++++++ A
Sbjct: 305 IEYAEMVFDRMFDKDVVTWNLLISGYVQQGLVEDAIYMSQLMRLEKLKYDCVTLSTLMSA 364

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
                 L  G+++  Y  R  L  ++ L +  +DMYAKCGS+ +A+ VFD    +D++ W
Sbjct: 365 AARTENLKFGKEVQCYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDSTVEKDLILW 424

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            ++++AY  SG   +A+ LF +M +  + P+ I +  ++ +    G + E +  F +  +
Sbjct: 425 NTLLAAYAQSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGEVNEAKEMF-LQMQ 483

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP---MEPNERIWGSLVAACCLYSNMD 485
              + P +  +  +++ + + G  EEA   +++M    + PN       ++A    +++ 
Sbjct: 484 SSGISPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSASANLASLH 543

Query: 486 IGILAADHIFHLAPNQSGYYVLLS--NIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
            G     +I     + S   +  S  ++YAK    GD+ +  +   SK   ++P
Sbjct: 544 FGRSIHGYIIRNLRHSSSVSIETSLVDMYAKC---GDINKAERVFGSKLYSELP 594



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 133/586 (22%), Positives = 241/586 (41%), Gaps = 109/586 (18%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           +I   L     +   L   YG CG + D R VFDEI  +NVV +N L+  YV N +  +A
Sbjct: 179 VIKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEA 238

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
           + ++ +M   G +P   T    L A +    +  G Q H   +  GL+ +   G  L+  
Sbjct: 239 IRLFSDMRKEGVEPTRVTVSTCLSASANMVGVEEGKQSHAIAIVNGLELDNILGTSLLNF 298

Query: 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
           Y K G ++ A  V + M  KDVVTWN +++GY Q G  ++A+ + + M   ++K D  T+
Sbjct: 299 YCKVGLIEYAEMVFDRMFDKDVVTWNLLISGYVQQGLVEDAIYMSQLMRLEKLKYDCVTL 358

Query: 235 ASLLPSVTNTSP---------------------------------ENVLSVKEMFLKLDN 261
           ++L+ +   T                                    +++  K++F     
Sbjct: 359 STLMSAAARTENLKFGKEVQCYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDSTVE 418

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           K+L+ WN ++A YA + +  EA+ L+ +M++  + PN I+                    
Sbjct: 419 KDLILWNTLLAAYAQSGLSGEALRLFYEMQLESVPPNVITW------------------- 459

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ----DVVSWTSMISAYGM 377
                           N ++    + G + EA+ +F QM+      +++SWT+M++    
Sbjct: 460 ----------------NLIILSLLRNGEVNEAKEMFLQMQSSGISPNLISWTTMMNGMVQ 503

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
           +G   +A+    KM  SGL P++ +    LSA ++   L  GR     +    +    + 
Sbjct: 504 NGCSEEAILFLRKMQESGLRPNAFSITVALSASANLASLHFGRSIHGYIIRNLRHSSSVS 563

Query: 438 HFACLVDLLGRAGKVEEA----------------------------------YDLIKQMP 463
               LVD+  + G + +A                                  Y  ++ M 
Sbjct: 564 IETSLVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAIALYRSLEDMG 623

Query: 464 MEPNERIWGSLVAACCLYSNMD--IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
           ++P+   + SL++AC    ++D  +G+  A  + H       +Y L+ ++ A AG     
Sbjct: 624 IKPDSVTFTSLLSACNHAGDIDQAVGVFTAMVLKHGMTPCLEHYGLMVDLLASAGETEKA 683

Query: 522 KRVRKFMNSKGIKKMPGASV-EMNDQVQIIALPLRSSKCLTTGPKN 566
            R+ + M  K   +M  + V   N Q +   +   S   L + P+N
Sbjct: 684 IRLIEEMPYKPDARMIQSLVASCNKQHKTELVEYLSRHLLESEPEN 729



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 12/205 (5%)

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK--LQPNL 334
           N    EA+ L  +M+              L  C     L  G++IH  + +       N 
Sbjct: 28  NGEIKEALSLVTEMDFRNXRIGPEIYGEXLQGCVYERDLSTGKQIHARILKNGDFYARNE 87

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            +E  LV  YAKC +L  A  +F ++R ++V SW ++I      G    A+  F +ML +
Sbjct: 88  YIETKLVIFYAKCDALEXAEVIFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLEN 147

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGR----YYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450
            + PD+    +V  AC        GR    Y  K   E    V      + L D+ G+ G
Sbjct: 148 EIFPDNFVVPNVCKACGALQWSRFGRGVHGYVIKAGLEDCVFVA-----SSLADMYGKCG 202

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLV 475
            +++A  +  ++P E N   W +L+
Sbjct: 203 VLDDARKVFDEIP-ERNVVAWNALM 226


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 172/529 (32%), Positives = 282/529 (53%), Gaps = 64/529 (12%)

Query: 84  RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
           RH+FD +           +       L+ + + V  ++   G        P VLK+C+ S
Sbjct: 128 RHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKSCAQS 187

Query: 144 NSLLVGLQIHCSVVKVGL-----------DYNLFNG--------------------NGLV 172
            +   G Q HC  +  G+           D+   NG                    N L+
Sbjct: 188 AASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLI 247

Query: 173 AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
             Y K G ++EARR+ + MP +   +WNSM+A YA  G F EAL +  +M      P+A 
Sbjct: 248 TGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAI 307

Query: 233 TMASLLPSVTNTSP----------------ENVL---SVKEMFLK-------------LD 260
           T+ ++      T                  +NV+   ++ EM++K             + 
Sbjct: 308 TITTVFSICAKTGDLDTGRRARAWIREEDLQNVIVHTALMEMYVKCRAIDEARHEFDRMP 367

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
            +++V+W+ MIA Y+ N  P E+++L+ +M+    +PN +++  VL AC  L +  LG +
Sbjct: 368 RRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQ 427

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
           I  Y+E + L     L +AL+DMY KCG +  AR+VF++M  + VV+W SMI    ++G 
Sbjct: 428 IGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALNGF 487

Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA 440
             DA+AL+ KM+  G+ P+ + FV++L+AC+HAGL+++G  +F+ M ++  + P++EH A
Sbjct: 488 AEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFEEMKKKQHVSPQVEHCA 547

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500
           C+VDLL ++G++ EAY  I  M +EPN  IW +L++AC  ++++++  LAA  +  L PN
Sbjct: 548 CIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAAGKLVALEPN 607

Query: 501 QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            S  YVLLSNIYA AG WGDV+ +R  M SK ++K+   S +E++ +V 
Sbjct: 608 NSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDGEVH 656



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 160/340 (47%), Gaps = 25/340 (7%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           I  K  D+ T ++  A+  I +    N  +   LM  Y  C  + + RH FD +  ++VV
Sbjct: 315 ICAKTGDLDTGRR--ARAWIREEDLQNVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVV 372

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            ++ +I  Y  N   +++L +++ M      P+  T   VL AC+   S  +G QI   +
Sbjct: 373 AWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYI 432

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
               L    + G+ L+ MY KCG +  AR V N M  K VVTWNSM+ G A NG  ++A+
Sbjct: 433 ESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAI 492

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNV-----MI 271
            + R+M    I+P+  T  +LL + T+     V      F ++  K  VS  V     ++
Sbjct: 493 ALYRKMVGDGIQPNEVTFVALLTACTHAG--LVDKGIAFFEEMKKKQHVSPQVEHCACIV 550

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG-----DLSALLLGRKIHRYVE 326
            +   +    EA      MEV   EPNA+  +++L AC      +L+ L  G+ +     
Sbjct: 551 DLLCKSGRLWEAYKFICDMEV---EPNAVIWSTLLSACRAHADVELAKLAAGKLV----- 602

Query: 327 RKKLQP-NLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
              L+P N  +   L ++YA  G   + R + D MR +++
Sbjct: 603 --ALEPNNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNL 640


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 171/527 (32%), Positives = 294/527 (55%), Gaps = 27/527 (5%)

Query: 27  TLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHV 86
            +LSG A N  +++       +K+  Q+++   +  N      L+  Y   G++ D R +
Sbjct: 158 AMLSGFAQNGFVEE------ARKIFDQMLVKNEISWNG-----LLSAYVQNGRIEDARRL 206

Query: 87  FDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL 146
           FD   +  +V +N L+  YV      DA  ++  M V     D  ++  ++   +  N L
Sbjct: 207 FDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVR----DKISWNIMITGYA-QNGL 261

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY 206
           L   +     + +    ++F    +V+ + + G L EA R+  +MP K+ V+WN+M+AGY
Sbjct: 262 LSEARRLFEELPI---RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGY 318

Query: 207 AQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVS 266
            Q+ + ++A ++  +M S R     +TM +      N     +L     F ++  ++ +S
Sbjct: 319 VQSQQIEKARELFDQMPS-RNTSSWNTMVTGYAQCGNIDQAKIL-----FDEMPQRDCIS 372

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           W  MI+ YA +    EA+ L+++M+  G   N  ++A  L +C +++AL LG+++H  + 
Sbjct: 373 WAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLV 432

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           +   Q      NAL+ MY KCGS+ EA  VF+ +  +D+VSW +MI+ Y   G G +A+A
Sbjct: 433 KAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALA 492

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           LF  M M+ + PD +  V VLSACSH G +++G  YF  M + Y +    +H+ C++DLL
Sbjct: 493 LFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLL 551

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
           GRAG+++EA +L+K MP  P+   WG+L+ A  ++ + ++G  AA+ +F + P+ SG YV
Sbjct: 552 GRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYV 611

Query: 507 LLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
           LLSN+YA +GRW +V+ +R  M  KG+KK+PG S VE+ ++  I  +
Sbjct: 612 LLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTV 658



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 173/361 (47%), Gaps = 35/361 (9%)

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
           +D ++   N  ++ Y + G  + A  V N M  +  VT+N+M++GY  N +FD A  V  
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115

Query: 221 EMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
           +M      PD D ++  +         N+ + + +F ++  K++VSWN M++ +A N   
Sbjct: 116 KM------PDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFV 169

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH--RYVERKKLQPNLRLEN 338
            EA  ++ QM V     N IS        G LSA +   +I   R +   K+   +   N
Sbjct: 170 EEARKIFDQMLV----KNEISWN------GLLSAYVQNGRIEDARRLFDSKMDWEIVSWN 219

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
            L+  Y +   L +AR++FD+M  +D +SW  MI+ Y  +G   +A  LF ++ +     
Sbjct: 220 CLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR---- 275

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           D  A+ +++S     G+L+E    F+ M E+ ++      +  ++    ++ ++E+A +L
Sbjct: 276 DVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEV-----SWNAMIAGYVQSQQIEKAREL 330

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS--GYYVLLSNIYAKAG 516
             QMP   N   W ++V       N+D     A  +F   P +    +  ++S  YA++G
Sbjct: 331 FDQMP-SRNTSSWNTMVTGYAQCGNID----QAKILFDEMPQRDCISWAAMISG-YAQSG 384

Query: 517 R 517
           +
Sbjct: 385 Q 385


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 170/530 (32%), Positives = 276/530 (52%), Gaps = 37/530 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G+      VF+ +T +NVV +  +I   V+     D L  +  M       D
Sbjct: 192 LVDMYMKVGKTEQGCSVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYD 251

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +T+   LKA + S  L  G  IH   +K G +   +  N L  MY KC       R+  
Sbjct: 252 SHTFAVALKASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFG 311

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE-- 247
            M + DVV+W +++  Y Q G  + ALD  + M    + P+  T AS++ +  N +    
Sbjct: 312 KMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKW 371

Query: 248 --------------NVLSVKE-----------------MFLKLDNKNLVSWNVMIAVYAN 276
                         + LSV                   +F  +  K+++SW+ +I+VY  
Sbjct: 372 GEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQ 431

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
            S   EA +    M   G +PN  ++ASVL  CG ++ L  G+++H Y     L     +
Sbjct: 432 GSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQVHAYALCIGLDHETMV 491

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            +AL+ MY++ G+L EA  +FD ++  D+VSWT+MI+ Y   G   +A++LF  +   GL
Sbjct: 492 HSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGYAEHGYSQEAISLFENISSVGL 551

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PD + F+ +L+AC+HAGL++ G YY+K+MT +Y++ P  EH+ C++DLL RAG++ EA 
Sbjct: 552 MPDYVTFIGILTACNHAGLVDLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRLSEAE 611

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
            +++ MP   ++ +W +L+ AC  + ++D  I AA+ +  L PN +G ++ L+NIY+ +G
Sbjct: 612 HMVRNMPFPCDDVVWSTLLRACRDHGDLDRAIWAAEQMLRLHPNSAGAHITLANIYSASG 671

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS---SKCLTT 562
           R  +   VRK M SKG+ K PG S +  NDQ+      ++S   SK +TT
Sbjct: 672 RREEAAHVRKLMKSKGVIKEPGWSWINSNDQLNTFVAGVQSHPLSKQITT 721



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 226/503 (44%), Gaps = 77/503 (15%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV-HGFDPDCYTYPCV 136
           G++ + R +F+++++++ + +  LI  YVN     +AL ++ NM V  G   D +     
Sbjct: 98  GKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQKDQFVVSVA 157

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDV 196
           LKAC+   ++  G  +H   VK GL  ++F  + LV MY K G  ++   V  +M +++V
Sbjct: 158 LKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTTRNV 217

Query: 197 VTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS---------------- 240
           V+W +++ G    G   + L    EM   ++  D+ T A  L +                
Sbjct: 218 VSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAIHAQ 277

Query: 241 -----------VTNT---------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                      V NT          P+ V+    +F K+   ++VSW  +I  Y      
Sbjct: 278 TIKQGFNETAYVVNTLGTMYSKCRKPDYVM---RLFGKMSTPDVVSWTNLIMTYVQMGDE 334

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
             A+D + +M    + PN  + ASV+ AC +L+    G +IH +  R  L   L + N++
Sbjct: 335 ERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVDALSVSNSI 394

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           + +Y+KCG L EA  VFD M  +D++SW+++IS Y       +A    S M   G  P+ 
Sbjct: 395 ITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNE 454

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH----FACLVDLLGRAGKVEEA- 455
            A  SVLS C    LLE G+         Y L   ++H     + L+ +  R+G ++EA 
Sbjct: 455 FALASVLSVCGSMALLEPGK-----QVHAYALCIGLDHETMVHSALISMYSRSGNLQEAS 509

Query: 456 --YDLIKQMPMEPNERIWGSLV----------AACCLYSNMDIGILAADHIFHL----AP 499
             +D IK   +      W +++           A  L+ N+    L  D++  +    A 
Sbjct: 510 KIFDSIKNNDIVS----WTAMINGYAEHGYSQEAISLFENISSVGLMPDYVTFIGILTAC 565

Query: 500 NQSG-------YYVLLSNIYAKA 515
           N +G       YY L++N Y  A
Sbjct: 566 NHAGLVDLGFYYYKLMTNEYQIA 588



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 186/419 (44%), Gaps = 41/419 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +HAQ I  Q  +    +   L   Y  C +      +F +++  +VV +  LI +YV 
Sbjct: 272 KAIHAQTI-KQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQ 330

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                 AL  +K M      P+ YT+  V+ AC+       G QIH   +++GL   L  
Sbjct: 331 MGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVDALSV 390

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N ++ +Y KCG L+EA  V + M  KD+++W+++++ Y Q     EA +    M     
Sbjct: 391 SNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGP 450

Query: 228 KPDADTMASLLP---SVTNTSP------------------------------ENVLSVKE 254
           KP+   +AS+L    S+    P                               N+    +
Sbjct: 451 KPNEFALASVLSVCGSMALLEPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQEASK 510

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F  + N ++VSW  MI  YA +    EA+ L+  +   G+ P+ ++   +L AC     
Sbjct: 511 IFDSIKNNDIVSWTAMINGYAEHGYSQEAISLFENISSVGLMPDYVTFIGILTACNHAGL 570

Query: 315 LLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQM--RCQDVVSWTSM 371
           + LG   ++ +  + ++ P+      ++D+  + G L+EA  +   M   C DVV W+++
Sbjct: 571 VDLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRLSEAEHMVRNMPFPCDDVV-WSTL 629

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           + A    G    A+    +ML   L P+S  A +++ +  S +G  EE  +  K+M  +
Sbjct: 630 LRACRDHGDLDRAIWAAEQMLR--LHPNSAGAHITLANIYSASGRREEAAHVRKLMKSK 686



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 22/199 (11%)

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
           PN+   N+ +    K G + EAR +F++M  +D +SWT++I+ Y  +    +A+ LFS M
Sbjct: 82  PNMPELNSQLKQLMKLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNM 141

Query: 392 LM-SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM---TEQYKLVPRIEHFACLVDLLG 447
            + SGL  D       L AC+    L    Y+ +++   + +  L+  +   + LVD+  
Sbjct: 142 WVDSGLQKDQFVVSVALKACA----LGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYM 197

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLV-----AACCL-----YSNMDIGILAAD-HIFH 496
           + GK E+   + + M    N   W +++     A C L     +S M    +  D H F 
Sbjct: 198 KVGKTEQGCSVFENMTTR-NVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFA 256

Query: 497 LAPNQSGYYVLLSNIYAKA 515
           +A   S    LL   Y KA
Sbjct: 257 VALKASAESGLLH--YGKA 273


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 172/480 (35%), Positives = 271/480 (56%), Gaps = 34/480 (7%)

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           ++ + +  + A+     M  HG   D  TY  ++K CS   ++  G ++H  +   G + 
Sbjct: 29  NFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEP 88

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
            +F  N L+ MY K   L+EA  + ++MP ++VV+W +M++ Y+ N   D+AL     M 
Sbjct: 89  KMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMF 147

Query: 224 SLRIKPDADTMASLLPS-------------VTNTSPENVLSVKEMFLK-------LDN-- 261
              ++P+  T +S+L +             +  T  E+ + V+   +        LDN  
Sbjct: 148 REGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNAL 207

Query: 262 --------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
                   ++LV WN +I  +A NS   EA++L+ +M+  G   +  ++ SVL AC  L+
Sbjct: 208 GVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLA 267

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
            L LGR++H +V   K   +L L NAL+DMY KCGSL +A + F +M  +DV+SW++M++
Sbjct: 268 LLELGRQVHVHV--LKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVA 325

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
               +G    A+ LF  M  SG  P+ I  + VL ACSHAGL+E+G YYF+ M + + + 
Sbjct: 326 GLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVD 385

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P  EH+ CL+DLLGRAG+++EA  LI +M  EP+   W +L+ AC ++ N+D+ I AA  
Sbjct: 386 PGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKK 445

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
           I  L P  +G Y+LLSNIYA   RW DV  VRK M ++GI+K PG S +E++ Q+ +  L
Sbjct: 446 IIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFIL 505



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 165/340 (48%), Gaps = 41/340 (12%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y     + +   +FDE+  +NVV +  +I +Y +N L   AL     M   G  P+
Sbjct: 96  LLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAY-SNKLNDKALKCLILMFREGVRPN 154

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +TY  VL+AC G  +L    Q+HC ++K GL+ ++F  + L+ +Y K   L  A  V +
Sbjct: 155 MFTYSSVLRACDGLPNL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFD 211

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS---- 245
           +MP++D+V WNS++ G+AQN   +EAL++ + M+      D  T+ S+L + T  +    
Sbjct: 212 EMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLEL 271

Query: 246 ----------------PENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNS 278
                             N L                F ++  K+++SW+ M+A  A N 
Sbjct: 272 GRQVHVHVLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNG 331

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL---QPNLR 335
              +A++L+  M+  G  PN I+V  VL AC    A L+ +  + +   KKL    P   
Sbjct: 332 YSRQALELFESMKESGSRPNYITVLGVLFACS--HAGLVEKGWYYFRSMKKLFGVDPGRE 389

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
               L+D+  + G L EA  +  +M C+ D V+W +++ A
Sbjct: 390 HYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGA 429



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 145/288 (50%), Gaps = 23/288 (7%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +  L++LH  II    L S+  +   L+  Y     + +   VFDE+  +++V +N +I 
Sbjct: 168 LPNLRQLHCGII-KTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIG 226

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            +  N    +AL+++K M   GF  D  T   VL+AC+G   L +G Q+H  V+K   D 
Sbjct: 227 GFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQ 284

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           +L   N L+ MY KCG L++A    + M  KDV++W++MVAG AQNG   +AL++   M+
Sbjct: 285 DLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMK 344

Query: 224 SLRIKPDADTMASLLPSVTNTSPEN-----VLSVKEMFLKLDNKNLVSWNVMIAVYANNS 278
               +P+  T+  +L + ++            S+K++F     +    +  +I +     
Sbjct: 345 ESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGRE--HYGCLIDLLGRAG 402

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
              EAV L  +ME    EP++++  ++L AC          ++HR V+
Sbjct: 403 RLDEAVKLIHEMEC---EPDSVTWRTLLGAC----------RVHRNVD 437


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 169/525 (32%), Positives = 277/525 (52%), Gaps = 36/525 (6%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           +N  +   L+  Y   G + D R VFD++ ++N V +  ++  Y       +A  +++ M
Sbjct: 156 NNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLM 215

Query: 122 SVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
                 + + +    VL A S    LL+G+Q+H  V+K GL   +   N LV MY K  C
Sbjct: 216 LQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAEC 275

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           +  A  V      ++ +TW++M+ GYAQNG  D A  +  +M S    P   T   +L +
Sbjct: 276 MDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNA 335

Query: 241 VTNTSP----------------ENVLSVKEMFLKL------------------DNKNLVS 266
            ++                   E  + VK   + +                  D  ++V 
Sbjct: 336 SSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVI 395

Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
           W  MI  +  N    EA+ LY +M+  G+ P+ ++V SVL AC  L+AL  G+++H  + 
Sbjct: 396 WTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQIL 455

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
           +        +  AL  MY+KCG+L ++  VF +M  +D++SW S+IS +   G+G DA+ 
Sbjct: 456 KCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIISGFSQHGRGRDALD 515

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           LF +M + G+ PD I F++VL ACSH GL++ G +YF+ M++ Y L+P+++H+AC+VD+L
Sbjct: 516 LFEEMKLEGIAPDHITFINVLCACSHMGLVDRGWFYFRAMSKDYGLIPKLDHYACIVDIL 575

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506
            RAG+++EA D I+ + ++    +W  ++ AC    + D+G  A + +  L    S  Y+
Sbjct: 576 SRAGQLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYI 635

Query: 507 LLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           LLSNIYA   +W DV+RVR  M  +G+ K PG S VE+N+QV + 
Sbjct: 636 LLSNIYAAQRKWNDVERVRHLMRLRGVSKDPGCSWVELNNQVNVF 680



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/410 (26%), Positives = 191/410 (46%), Gaps = 68/410 (16%)

Query: 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190
           + + C L + SGSN                   N+F    L+ MY K G + +ARRV + 
Sbjct: 143 HAFACKLPSSSGSN-------------------NVFVSTALLNMYCKLGAISDARRVFDQ 183

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPDADTMASLLPSVT------- 242
           MP ++ V+W +MV+GYA     +EA ++ R M +   ++ +     ++L +V+       
Sbjct: 184 MPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQECPLEKNEFVATAVLSAVSVPLGLLI 243

Query: 243 ---------------NTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYAN 276
                            S EN L           +   +F     +N ++W+ MI  YA 
Sbjct: 244 GVQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQ 303

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N     A  ++LQM   G  P   +   +L A  D+ AL++G++ H  + +   +  + +
Sbjct: 304 NGEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYV 363

Query: 337 ENALVDMYAKCGSLTEARTVFDQM-RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           ++ALVDMYAKCG   +A+  F Q+    DVV WT+MI+ +  +G+  +A+ L+S+M   G
Sbjct: 364 KSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEG 423

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           + P  +   SVL AC+    LE G+  + +I+   + L   +     L  +  + G +E+
Sbjct: 424 VMPSYLTVTSVLRACACLAALEPGKQLHAQILKCGFGLGGSVG--TALSTMYSKCGNLED 481

Query: 455 AYDLIKQMPMEPNERIWGSLVA----------ACCLYSNMDIGILAADHI 494
           +  + ++MP + +   W S+++          A  L+  M +  +A DHI
Sbjct: 482 SMVVFRRMP-DRDIISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHI 530



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 174/391 (44%), Gaps = 36/391 (9%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +LH  +++   L    S+   L+  Y     M     VF     +N + ++ +I  Y  N
Sbjct: 246 QLHG-LVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQN 304

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
                A  ++  M   GF P  +T+  +L A S   +L+VG Q H  +VK+G +  ++  
Sbjct: 305 GEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVK 364

Query: 169 NGLVAMYGKCGCLKEARRVLNDM-PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           + LV MY KCGC  +A+   + +    DVV W +M+ G+ QNG  +EAL +   M+   +
Sbjct: 365 SALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGV 424

Query: 228 KPDADTMASLLPS---VTNTSPENVLSVKEM----------------------------- 255
            P   T+ S+L +   +    P   L  + +                             
Sbjct: 425 MPSYLTVTSVLRACACLAALEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMV 484

Query: 256 -FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
            F ++ +++++SWN +I+ ++ +    +A+DL+ +M++ GI P+ I+  +VL AC  +  
Sbjct: 485 VFRRMPDRDIISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACSHMGL 544

Query: 315 LLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           +  G    R + +   L P L     +VD+ ++ G L EA+   + +          ++ 
Sbjct: 545 VDRGWFYFRAMSKDYGLIPKLDHYACIVDILSRAGQLKEAKDFIESITIDHGTCLWRIVL 604

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404
               S + +D  A   + LM     DS A++
Sbjct: 605 GACRSLRDFDVGAYAGEQLMELGTEDSSAYI 635



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 11/158 (6%)

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQM--EVHGIEPNAISVASVLPACGDLSALLLGR 319
           +++ SWN ++   + +  P  A+  +  M      + P   S A+V  A   + +   G 
Sbjct: 82  RDVASWNSLLNPLSRHQ-PLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPSASAGA 140

Query: 320 KIHRY---VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
             H +   +       N+ +  AL++MY K G++++AR VFDQM  ++ VSW +M+S Y 
Sbjct: 141 VAHAFACKLPSSSGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYA 200

Query: 377 MSGQGYDAVALFSKMLMSGLCP---DSIAFVSVLSACS 411
                 +A  LF  ML    CP   +     +VLSA S
Sbjct: 201 TGKCSEEAFELFRLMLQE--CPLEKNEFVATAVLSAVS 236



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 2/145 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LHAQI+         S+G  L   Y  CG + D+  VF  + +++++ +N +I  +  
Sbjct: 448 KQLHAQIL-KCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIISGFSQ 506

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYNLF 166
           +    DAL +++ M + G  PD  T+  VL ACS    +  G     ++ K  GL   L 
Sbjct: 507 HGRGRDALDLFEEMKLEGIAPDHITFINVLCACSHMGLVDRGWFYFRAMSKDYGLIPKLD 566

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDM 191
           +   +V +  + G LKEA+  +  +
Sbjct: 567 HYACIVDILSRAGQLKEAKDFIESI 591


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 178/503 (35%), Positives = 274/503 (54%), Gaps = 39/503 (7%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           K  D++T +K++   I +  +  N  +   L+  Y  C  +   + +FDE    N+   N
Sbjct: 247 KLEDLETGEKVY-DFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCN 305

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            +  +YV   L  +AL V   M   G  PD  +    + +CS   ++L G   H  V++ 
Sbjct: 306 AMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRN 365

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           G +      N L+ MY KC     A R+ + M +K VVTWNS+VAGY +NG  D A +  
Sbjct: 366 GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWET- 424

Query: 220 REMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSM 279
                                  NT PE              KN+VSWN +I+     +M
Sbjct: 425 ----------------------FNTMPE--------------KNIVSWNTIISALVQENM 448

Query: 280 PAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
             EA++++  M+    +  + +++ S+  ACG L AL L + I+ Y+E+ ++Q ++RL  
Sbjct: 449 YEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGT 508

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
            LVDM+++CG    A ++F+ +  +DV +WT+ I A  M+G    A+ LF++M+  GL P
Sbjct: 509 TLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKP 568

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           D + F+  L+AC H GL+++G+  F  M + + + P   H+ C+VDLLGRAG +EEA  L
Sbjct: 569 DGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQL 628

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
           IK MP EPN+ IW SL+AAC +  N+++   AA+ I  LAP ++G YVLLSN+YA AGRW
Sbjct: 629 IKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRW 688

Query: 519 GDVKRVRKFMNSKGIKKMPGASV 541
            D+ +VR  M  KG++K PG SV
Sbjct: 689 NDMAKVRLSMKEKGLRKPPGTSV 711



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 201/447 (44%), Gaps = 70/447 (15%)

Query: 84  RHVFDEITNKNVVF-FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
           + VF+   +    F +N LIR Y ++ L  +A+ ++  M   G  PD YT+P  L  C+ 
Sbjct: 86  KEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAK 145

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
           S     G+QIH  ++K+    +LF  N LV  Y +CG L  AR+V ++M  ++VV+W SM
Sbjct: 146 SRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSM 205

Query: 203 VAGYAQNGRFDEALDV-CREMESLRIKPDADTMASLLPS----------------VTNTS 245
           + GYA+     +A+D+  R +    + P++ TM  ++ +                + ++ 
Sbjct: 206 ICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSG 265

Query: 246 PE----------------NVLSV-KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
            E                N + + K +F +    NL   N M + Y    +  EA+ +  
Sbjct: 266 IEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLN 325

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
            M   GI P+ IS+ S + +C  L  +L G+  H YV R   +    + NAL+DMY KC 
Sbjct: 326 LMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCH 385

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM----------LMSGLCP 398
               A  +FD+M  + VV+W S+++ Y  +G+   A   F+ M          ++S L  
Sbjct: 386 RQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQ 445

Query: 399 ----------------------DSIAFVSVLSACSHAGLLEEGRY-YFKIMTEQYKLVPR 435
                                 D +  +S+ SAC H G L+  ++ Y+ I   + +L  R
Sbjct: 446 ENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVR 505

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQM 462
           +     LVD+  R G  E A  +   +
Sbjct: 506 LG--TTLVDMFSRCGDPESAMSIFNSL 530


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 159/502 (31%), Positives = 263/502 (52%), Gaps = 69/502 (13%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH----- 124
           +M  Y   G++   R +FDEI N NVV +N +I  Y  N +  +A  +++ M V      
Sbjct: 464 MMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASW 523

Query: 125 --------------------------GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
                                     G  P   ++   L AC+    + +G  IH   +K
Sbjct: 524 AAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIK 583

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
            G  +N +  NGL++MY KCG +++   V   +  KD V+WNS+++G ++N   D+A   
Sbjct: 584 TGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDA--- 640

Query: 219 CREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNS 278
                                             + +F K+  +++VSW  +I+ Y    
Sbjct: 641 ----------------------------------RVVFEKMPKRDVVSWTAIISAYVQAG 666

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
               A+DL+L M   GI+PN ++V S+L ACG+L A+ LG + H  + +      L + N
Sbjct: 667 HGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGN 726

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           +L+ MY KCG   +   VF++M   D+++W +++     +G G +A+ +F +M + G+ P
Sbjct: 727 SLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILP 785

Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           D ++F+ VL ACSHAGL++EG  +F  MT++Y ++P + H+ C+VDLLGRAG + EA  L
Sbjct: 786 DQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEAL 845

Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
           I+ MP++P+  IW +L+ AC ++ N+++G   A+ +F +   +S  YVLLSN++A  G W
Sbjct: 846 IENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMW 905

Query: 519 GDVKRVRKFMNSKGIKKMPGAS 540
             V  +RK M  +G+ K PG S
Sbjct: 906 DKVAEIRKLMKDQGLTKEPGIS 927



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/465 (26%), Positives = 212/465 (45%), Gaps = 67/465 (14%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y  C +M + R +FD++  +N V + V+I  YV+   Y++A  V+  M      PD   +
Sbjct: 305 YCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIF 364

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             VL A +G + L +   +    +K G + ++  G+ ++  Y + G L  A      MP 
Sbjct: 365 VVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPE 424

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS----------------- 236
           ++  +W +M+A +AQ GR D+A+ +   +    +      M +                 
Sbjct: 425 RNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEI 484

Query: 237 LLPSVTN--------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
           L P+V          T    +   K++F K+  KN  SW  MIA +  N    EA++L +
Sbjct: 485 LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLI 544

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           ++   G  P+  S  S L AC ++  + +GR IH    +   Q N  + N L+ MYAKCG
Sbjct: 545 ELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCG 604

Query: 349 S-------------------------------LTEARTVFDQMRCQDVVSWTSMISAYGM 377
           +                               L +AR VF++M  +DVVSWT++ISAY  
Sbjct: 605 NVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQ 664

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY----FKIMTEQYKLV 433
           +G G  A+ LF  ML  G+ P+ +   S+LSAC + G ++ G  +    FK+  + +  V
Sbjct: 665 AGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFV 724

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
                   L+ +  + G  E+ + + ++MP E +   W +++  C
Sbjct: 725 GN-----SLITMYFKCG-YEDGFCVFEEMP-EHDLITWNAVLVGC 762



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 155/356 (43%), Gaps = 54/356 (15%)

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           +LF  N  +   G+ G ++EARRV N+M  +DVV+WNSM+ GY+QNG+ DEA    R + 
Sbjct: 170 HLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEA----RLLF 225

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
              +  +  T   LL          +   +E+F  +  +N+VSWN MI+ Y  N     A
Sbjct: 226 DAFVGKNIRTWTILLTGYAKEG--RIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNA 283

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
             L+ +M                                        + N+   N++V  
Sbjct: 284 RKLFDEMP---------------------------------------EKNVASWNSVVTG 304

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
           Y  C  ++EAR +FDQM  ++ VSW  MIS Y      ++A  +F KM  +   PD   F
Sbjct: 305 YCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIF 364

Query: 404 VSVLSACSHAGLLEE-GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           V VLSA +    LE  G      +   Y+    +   + +++   R G ++ A    + M
Sbjct: 365 VVVLSAITGLDDLELIGSLRPIAIKTGYE--GDVVVGSAILNAYTRNGSLDLAMHFFETM 422

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS-GYYVLLSNIYAKAGR 517
           P E NE  W +++AA      +D  I     ++   P Q+      +   YA+ GR
Sbjct: 423 P-ERNEYSWTTMIAAFAQCGRLDDAI----QLYERVPEQTVATKTAMMTAYAQVGR 473



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 173/403 (42%), Gaps = 49/403 (12%)

Query: 51  HAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYL 110
            A+ + N+ +  +      ++  Y   G++ + R +FD    KN+  + +L+  Y     
Sbjct: 189 EARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGR 248

Query: 111 YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG 170
             +A  V+++M+    + +  ++  ++     +  L    ++   +     + N+ + N 
Sbjct: 249 IEEAREVFESMT----ERNVVSWNAMISGYVQNGDLKNARKLFDEMP----EKNVASWNS 300

Query: 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
           +V  Y  C  + EAR + + MP ++ V+W  M++GY     + EA DV  +M     +PD
Sbjct: 301 VVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPD 360

Query: 231 A----------------DTMASLLPSVTNTSPENVLSVK-----------------EMFL 257
                            + + SL P    T  E  + V                    F 
Sbjct: 361 QSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFE 420

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
            +  +N  SW  MIA +A      +A+ LY ++     E    +  +++ A   +  +  
Sbjct: 421 TMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVP----EQTVATKTAMMTAYAQVGRIQK 476

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
            R I   +    L PN+   NA++  Y + G L EA+ +F +M  ++  SW +MI+ +  
Sbjct: 477 ARLIFDEI----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQ 532

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           + +  +A+ L  ++  SG  P   +F S LSAC++ G +E GR
Sbjct: 533 NEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGR 575


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 173/525 (32%), Positives = 277/525 (52%), Gaps = 43/525 (8%)

Query: 25  QYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR 84
           Q+ +L+ D    +L     ++   +LHA  +    +  + ++G +L R Y A  ++  T 
Sbjct: 29  QHGVLTADRVAGLLTGCATLRRTGELHAAAV-RAGVDGDRAVGFRLQRAYAASDRLDLTV 87

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
            +     +   VF+   I ++ +  L+  AL +   M   G  P  +T    L AC G  
Sbjct: 88  TLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHG-- 145

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
            L +G  +H    K+ L  + +    L+ MY + G    AR + ++MP   VV   +M+ 
Sbjct: 146 -LALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLT 204

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL 264
            YA+ G  D+A                                     +E+F  + +K+ 
Sbjct: 205 CYAKMGALDDA-------------------------------------RELFDGMPSKDF 227

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           + WN MI  Y  +  P EA+ L+  M   G++P+ +++   L A   L     GR +H Y
Sbjct: 228 ICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSY 287

Query: 325 VER-KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383
           V+  +++Q N R+  AL+DMY KCGSL +A +VF+ +  +D+V W +MI+ Y M G    
Sbjct: 288 VKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRK 347

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV 443
           A+ +FS++   GL P  I F+ +L+ACSH+GL++EG  +F+ M E+Y +VP+IEH+ C+V
Sbjct: 348 ALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMV 407

Query: 444 DLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503
           DLLGRAG +EEA+ L++ M + P+  +W SL+AAC L+ NM +G   AD++       SG
Sbjct: 408 DLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSG 467

Query: 504 YYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
            Y+LLSNIYA  G W +V RVR  M + GI+K PG S +E+  +V
Sbjct: 468 MYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKV 512


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 173/525 (32%), Positives = 277/525 (52%), Gaps = 43/525 (8%)

Query: 25  QYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR 84
           Q+ +L+ D    +L     ++   +LHA  +    +  + ++G +L R Y A  ++  T 
Sbjct: 28  QHGVLTADRVAGLLTGCATLRRTGELHAAAV-RAGVDGDRAVGFRLQRAYAASDRLDLTV 86

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
            +     +   VF+   I ++ +  L+  AL +   M   G  P  +T    L AC G  
Sbjct: 87  TLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHG-- 144

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
            L +G  +H    K+ L  + +    L+ MY + G    AR + ++MP   VV   +M+ 
Sbjct: 145 -LALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLT 203

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL 264
            YA+ G  D+A                                     +E+F  + +K+ 
Sbjct: 204 CYAKMGALDDA-------------------------------------RELFDGMPSKDF 226

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           + WN MI  Y  +  P EA+ L+  M   G++P+ +++   L A   L     GR +H Y
Sbjct: 227 ICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSY 286

Query: 325 VER-KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383
           V+  +++Q N R+  AL+DMY KCGSL +A +VF+ +  +D+V W +MI+ Y M G    
Sbjct: 287 VKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRK 346

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV 443
           A+ +FS++   GL P  I F+ +L+ACSH+GL++EG  +F+ M E+Y +VP+IEH+ C+V
Sbjct: 347 ALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMV 406

Query: 444 DLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503
           DLLGRAG +EEA+ L++ M + P+  +W SL+AAC L+ NM +G   AD++       SG
Sbjct: 407 DLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSG 466

Query: 504 YYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
            Y+LLSNIYA  G W +V RVR  M + GI+K PG S +E+  +V
Sbjct: 467 MYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKV 511


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 165/452 (36%), Positives = 256/452 (56%), Gaps = 35/452 (7%)

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           Y  ++ AC+   SL     IH  +       ++F  N L+ +Y KCG + +ARRV + MP
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV--- 249
           ++D+ +W S++AGYAQN   DEAL +   M   R KP+  T ASLL +   ++   +   
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 250 ---LSVK---------------------------EMFLKLDNKNLVSWNVMIAVYANNSM 279
              L+VK                            +F +L++KN VSWN +IA +A    
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
               + ++ +M+ +G E    + +SV  A   + AL  G+ +H ++ +   + +  + N 
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNT 306

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           ++DMYAK GS+ +AR VFD++  +DVV+W SM++A+   G G +AV  F +M   G+  +
Sbjct: 307 ILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLN 366

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
            I F+S+L+ACSH GL++EG+ YF +M E Y L P I+H+  +VDLLGRAG + +A   I
Sbjct: 367 QITFLSILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFI 425

Query: 460 KQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519
            +MPM+P   +WG+L+ +C ++ N  IG  AADH+F L P+ +G  VLL NIYA  G+W 
Sbjct: 426 FKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWD 485

Query: 520 DVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
              RVRK M + G+KK P  S VE+ + V + 
Sbjct: 486 AAARVRKMMKATGVKKEPACSWVEIENSVHMF 517



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 169/369 (45%), Gaps = 35/369 (9%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           +Y  +   + +HA +  +Q    +  +   L+  Y  CG + D R VFD +  +++  + 
Sbjct: 76  RYRSLDDARAIHAHLAGSQ-FAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWT 134

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            LI  Y  N +  +AL +   M    F P+ +T+  +LKA   S S  +G QIH   VK 
Sbjct: 135 SLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKY 194

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
               +++ G+ L+ MY +CG +  A  V + + SK+ V+WN+++AG+A+ G  +  L + 
Sbjct: 195 DWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMF 254

Query: 220 REMESLRIKPDADTMASLLPSVTN---------------------------------TSP 246
            EM+    +    T +S+  ++                                      
Sbjct: 255 AEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKS 314

Query: 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
            +++  +++F ++D K++V+WN M+  +A   +  EAV  + +M   G+  N I+  S+L
Sbjct: 315 GSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSIL 374

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
            AC     +  G++    ++   L+P +     +VD+  + G L +A     +M  +   
Sbjct: 375 TACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTA 434

Query: 367 S-WTSMISA 374
           + W +++ +
Sbjct: 435 AVWGALLGS 443


>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Glycine max]
          Length = 595

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 174/545 (31%), Positives = 292/545 (53%), Gaps = 46/545 (8%)

Query: 36  DILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHV---FDEITN 92
           D++ K  D+++ K++HA ++ +  + ++    L + +     G+ +   H    F +  +
Sbjct: 14  DLIHKCNDLRSFKQIHAHLLTSALVTND----LVVTKAANFLGKHITDVHYPCNFLKQFD 69

Query: 93  KNVVFF--NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGL 150
            ++  F  N+LI  Y +  L + A+ +Y+    +GF PD YT+P VLK+C+  + +    
Sbjct: 70  WSLSSFPCNLLISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFSGIGEVR 129

Query: 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG 210
           Q H   VK GL  +++  N LV +Y  CG    A +V  DM  +DVV+W  +++GY + G
Sbjct: 130 QFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYVKTG 189

Query: 211 RFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN---------------------- 248
            F+EA+ +   M    ++P+  T  S+L +       N                      
Sbjct: 190 LFNEAISLFLRMN---VEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLYGEELVVCN 246

Query: 249 -----------VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297
                      V   ++MF ++  K+++SW  MI        P E++DL+ QM+  G EP
Sbjct: 247 AVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASGFEP 306

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           + + + SVL AC  L  L  GR +H Y++  +++ ++ +   LVDMYAKCG +  A+ +F
Sbjct: 307 DGVILTSVLSACASLGLLDCGRWVHEYIDCHRIKWDVHIGTTLVDMYAKCGCIDMAQRIF 366

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           + M  +++ +W + I    ++G G +A+  F  ++ SG  P+ + F++V +AC H GL++
Sbjct: 367 NGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVFTACCHNGLVD 426

Query: 418 EGRYYFKIMTEQ-YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA 476
           EGR YF  MT   Y L P +EH+ C+VDLL RAG V EA +LIK MPM P+ +I G+L++
Sbjct: 427 EGRKYFNEMTSPLYNLSPCLEHYGCMVDLLCRAGLVGEAVELIKTMPMPPDVQILGALLS 486

Query: 477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKM 536
           +   Y N+         + ++    SG YVLLSN+YA   +W +V+ VR+ M  KGI K 
Sbjct: 487 SRNTYGNVGFTQEMLKSLPNVEFQDSGIYVLLSNLYATNKKWAEVRSVRRLMKQKGISKA 546

Query: 537 PGASV 541
           PG+S+
Sbjct: 547 PGSSI 551



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 28/324 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           ++  Y  C  + D R +FDE+  K+++ +  +I   V      ++L ++  M   GF+PD
Sbjct: 248 VLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASGFEPD 307

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
                 VL AC+    L  G  +H  +    + +++  G  LV MY KCGC+  A+R+ N
Sbjct: 308 GVILTSVLSACASLGLLDCGRWVHEYIDCHRIKWDVHIGTTLVDMYAKCGCIDMAQRIFN 367

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS--PE 247
            MPSK++ TWN+ + G A NG   EAL    ++     +P+  T  ++  +  +     E
Sbjct: 368 GMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVFTACCHNGLVDE 427

Query: 248 NVLSVKEMFLKLDNKN--LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                 EM   L N +  L  +  M+ +     +  EAV+L             I    +
Sbjct: 428 GRKYFNEMTSPLYNLSPCLEHYGCMVDLLCRAGLVGEAVEL-------------IKTMPM 474

Query: 306 LPACGDLSALLLGRKIHRYV----ERKKLQPNLRLENA-----LVDMYAKCGSLTEARTV 356
            P    L ALL  R  +  V    E  K  PN+  +++     L ++YA      E R+V
Sbjct: 475 PPDVQILGALLSSRNTYGNVGFTQEMLKSLPNVEFQDSGIYVLLSNLYATNKKWAEVRSV 534

Query: 357 FDQMRCQDV--VSWTSMISAYGMS 378
              M+ + +     +S+I   GMS
Sbjct: 535 RRLMKQKGISKAPGSSIIRVDGMS 558


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 173/517 (33%), Positives = 286/517 (55%), Gaps = 46/517 (8%)

Query: 37  ILDKYPDIKTLKKLHAQIII-NQHLHSN-PSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           ++DK   +  + ++HA I+  N  LH   P + LKL R Y + G++  +  +F +  + +
Sbjct: 35  LIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPD 94

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
           +  F   I +   N L   A  +Y  +     +P+ +T+  +LK+CS  +  L    IH 
Sbjct: 95  LFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSGKL----IHT 150

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            V+K GL  + +   GLV +Y K G +  A++V + MP + +V+  +M+  YA+ G    
Sbjct: 151 HVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQG---- 206

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
                                            NV + + +F  +  +++VSWNVMI  Y
Sbjct: 207 ---------------------------------NVEAARALFDSMCERDIVSWNVMIDGY 233

Query: 275 ANNSMPAEAVDLYLQMEVHGI-EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           A +  P +A+ L+ ++   G  +P+ I+V + L AC  + AL  GR IH +V+  +++ N
Sbjct: 234 AQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLN 293

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML- 392
           +++   L+DMY+KCGSL EA  VF+    +D+V+W +MI+ Y M G   DA+ LF++M  
Sbjct: 294 VKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQG 353

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
           ++GL P  I F+  L AC+HAGL+ EG   F+ M ++Y + P+IEH+ CLV LLGRAG++
Sbjct: 354 ITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQL 413

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
           + AY+ IK M M+ +  +W S++ +C L+ +  +G   A+++  L    SG YVLLSNIY
Sbjct: 414 KRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIY 473

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           A  G +  V +VR  M  KGI K PG +++E+ ++V 
Sbjct: 474 ASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVH 510


>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
          Length = 461

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 161/439 (36%), Positives = 250/439 (56%), Gaps = 27/439 (6%)

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           P+ YT+P ++K C    S+  G +IH  ++K G + +LF  N L+ MY  CG + +AR +
Sbjct: 8   PNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAM 67

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE 247
                  D+VTWNSM+ GY +NG    A ++  EM    +      +A  + +   T+ E
Sbjct: 68  FEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAAE 127

Query: 248 NVLS-------------------------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
           ++ +                           E+F  +  +N+VSWN+M+A+Y       E
Sbjct: 128 DLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDE 187

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK-LQPNLRLENALV 341
            + ++ +M    + PN  ++ SVL AC  L  L  G+ IH Y++  + ++P++ L  AL+
Sbjct: 188 CLRMFDKMMGETM-PNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALL 246

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
            MYAKCG++  AR VFD+M  + VVSW SMI  YGM GQ   A+ +F  M   G  P+  
Sbjct: 247 TMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDA 306

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
            F+ VLSAC+H+G++ EG +YF +M   YK+ P++EH+ C+VDLLGRAG +++  +LI++
Sbjct: 307 TFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRK 366

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
           MPME    +WG+L++AC  +SN ++  + A  +  L P   G Y+LLSNIYA  G+W DV
Sbjct: 367 MPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAEGKWDDV 426

Query: 522 KRVRKFMNSKGIKKMPGAS 540
           + VRK M  +G+ K  G S
Sbjct: 427 EIVRKMMKERGLTKTTGLS 445



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 9/169 (5%)

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
           + PN  +   ++  C ++ ++  G KIH  + +   + +L + N+L+ MY+ CG + +AR
Sbjct: 6   VAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDAR 65

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            +F+     D+V+W SMI  Y  +G+   A  LF +M       D  ++ S+++     G
Sbjct: 66  AMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPER----DLFSWNSMIAGYVGNG 121

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
            +      F  M  +      I  + C++D   +   +E A +L   MP
Sbjct: 122 DMTAAEDLFNKMPFR-----DIVSWNCMIDGYAQVQNMEIACELFNWMP 165



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 80/160 (50%), Gaps = 2/160 (1%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K +H+ I  N+ +  +  +   L+  Y  CG M   R VFD+++N++VV +N +I  Y  
Sbjct: 223 KWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGM 282

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV-GLDYNLF 166
           +     AL ++ +M   G  P+  T+ CVL AC+ S  +L G      + +   ++  + 
Sbjct: 283 HGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVE 342

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAG 205
           +   +V + G+ G +K+   ++  MP +     W ++++ 
Sbjct: 343 HYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSA 382


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 170/471 (36%), Positives = 261/471 (55%), Gaps = 35/471 (7%)

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
            LHV   +     +PD   Y  +LK C+    L  G  +H  V+     ++L   N L+ 
Sbjct: 58  GLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLF 117

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MY +CG L+ ARR+ ++MP +D+V+W SM+ GYAQN R  +AL +   M S   +P+  T
Sbjct: 118 MYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFT 177

Query: 234 MASLLPSVTNTSPENV--------------------LSVKEM-------------FLKLD 260
           ++SL+      +  N                      S+ +M             F KL 
Sbjct: 178 LSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLG 237

Query: 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK 320
            KN VSWN +IA YA      EA+ L+++M+  G  P   + +++L +C  +  L  G+ 
Sbjct: 238 CKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKW 297

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
           +H ++ +   +    + N L+ MYAK GS+ +A  VFD++   DVVS  SM+  Y   G 
Sbjct: 298 LHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGL 357

Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA 440
           G +A   F +M+  G+ P+ I F+SVL+ACSHA LL+EG++YF +M  +Y + P++ H+A
Sbjct: 358 GKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLM-RKYNIEPKVSHYA 416

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500
            +VDLLGRAG +++A   I++MP+EP   IWG+L+ A  ++ N ++G  AA  +F L P+
Sbjct: 417 TIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPS 476

Query: 501 QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
             G + LL+NIYA AGRW DV +VRK M   G+KK P  S VE+ + V + 
Sbjct: 477 YPGTHTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVF 527



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 179/379 (47%), Gaps = 36/379 (9%)

Query: 35  NDILDKYPDIKTLK--KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           N +L +   +  LK  KL    ++N +   +  I   L+  Y  CG +   R +FDE+ +
Sbjct: 78  NTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPH 137

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
           +++V +  +I  Y  N    DAL ++  M   G +P+ +T   ++K C    S   G QI
Sbjct: 138 RDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQI 197

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H    K G   N+F G+ LV MY +CG L EA  V + +  K+ V+WN+++AGYA+ G  
Sbjct: 198 HACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEG 257

Query: 213 DEALDVCREMESLRIKPDADTMASLLPS---------------------------VTNT- 244
           +EAL +   M+    +P   T ++LL S                           V NT 
Sbjct: 258 EEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTL 317

Query: 245 -----SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                   ++   +++F KL   ++VS N M+  YA + +  EA   + +M   GIEPN 
Sbjct: 318 LHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPND 377

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           I+  SVL AC     L  G+     + +  ++P +     +VD+  + G L +A++  ++
Sbjct: 378 ITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEE 437

Query: 360 MRCQDVVS-WTSMISAYGM 377
           M  +  V+ W +++ A  M
Sbjct: 438 MPIEPTVAIWGALLGASKM 456



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 137/303 (45%), Gaps = 43/303 (14%)

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F  +D++NL+  ++      N+      +DL   ++   +EP+     ++L  C  L  L
Sbjct: 40  FCVIDDRNLLRPSL------NSKTGLHVLDL---IDCGSLEPDRTLYNTLLKRCTQLGKL 90

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             G+ +H +V     + +L ++N+L+ MYA+CGSL  AR +FD+M  +D+VSWTSMI+ Y
Sbjct: 91  KEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGY 150

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR--------------- 420
             + +  DA+ LF +ML  G  P+     S++  C +      GR               
Sbjct: 151 AQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNV 210

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLG---------------RAGKVEEAYDLIKQMPME 465
           +    + + Y     +     + D LG               R G+ EEA  L  +M  E
Sbjct: 211 FVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQRE 270

Query: 466 ---PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV-LLSNIYAKAGRWGDV 521
              P E  + +L+++C     ++ G     H+   +    GY    L ++YAK+G   D 
Sbjct: 271 GYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDA 330

Query: 522 KRV 524
           ++V
Sbjct: 331 EKV 333


>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
          Length = 514

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 162/486 (33%), Positives = 268/486 (55%), Gaps = 12/486 (2%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G +     +FDEI   +V   N ++R    +      + +Y  M   G  PD YT+  VL
Sbjct: 26  GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVL 85

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
           KACS       G   H  VV+ G   N +  N L+  +  CG L  A  + +D      V
Sbjct: 86  KACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKV 145

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
            W+SM +GYA+ G+ DEA+ +  EM      P  D +A  +        + + S +E+F 
Sbjct: 146 AWSSMTSGYAKRGKIDEAMRLFDEM------PYKDQVAWNVMITGCLKCKEMDSARELFD 199

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
           +   K++V+WN MI+ Y N   P EA+ ++ +M   G  P+ +++ S+L AC  L  L  
Sbjct: 200 RFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLET 259

Query: 318 GRKIHRYV-ERKKLQPNLR----LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
           G+++H Y+ E   +  ++     + NAL+DMYAKCGS+  A  VF  ++ +D+ +W ++I
Sbjct: 260 GKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLI 319

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
               +      ++ +F +M    + P+ + F+ V+ ACSH+G ++EGR YF +M + Y +
Sbjct: 320 VGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNI 378

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAAD 492
            P I+H+ C+VD+LGRAG++EEA+  ++ M +EPN  +W +L+ AC +Y N+++G  A +
Sbjct: 379 EPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANE 438

Query: 493 HIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQIIAL 552
            +  +  ++SG YVLLSNIYA  G+W  V++VRK  +   +KK  G S+   D  +++  
Sbjct: 439 KLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIEEDDDKLMMR 498

Query: 553 PLRSSK 558
            L SS+
Sbjct: 499 YLLSSE 504



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 147/305 (48%), Gaps = 30/305 (9%)

Query: 77  CGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCV 136
           C +M   R +FD  T K+VV +N +I  YVN     +AL ++K M   G  PD  T   +
Sbjct: 188 CKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSL 247

Query: 137 LKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNG----NGLVAMYGKCGCLKEARRVLNDM 191
           L AC+    L  G ++H  +++   +  +++ G    N L+ MY KCG +  A  V   +
Sbjct: 248 LSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGV 307

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS 251
             +D+ TWN+++ G A +   + ++++  EM+ L++ P+  T   ++ + +++    V  
Sbjct: 308 KDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSG--RVDE 364

Query: 252 VKEMFLKLDN-----KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
            ++ F  + +      N+  +  M+ +        EA   ++ +E   IEPNAI   ++L
Sbjct: 365 GRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEA---FMFVESMKIEPNAIVWRTLL 421

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENA-----LVDMYAKCG---SLTEARTVFD 358
            AC     + LG    +Y   K L  ++R + +     L ++YA  G    + + R +FD
Sbjct: 422 GACKIYGNVELG----KYANEKLL--SMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFD 475

Query: 359 QMRCQ 363
             R +
Sbjct: 476 DTRVK 480



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 128/292 (43%), Gaps = 18/292 (6%)

Query: 234 MASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
           +  L+ S + + P  +    ++F ++   ++   N ++   A +  P + V LY +ME  
Sbjct: 13  VGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKR 72

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
           G+ P+  +   VL AC  L     G   H  V R     N  ++NAL+  +A CG L  A
Sbjct: 73  GVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIA 132

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
             +FD       V+W+SM S Y   G+  +A+ LF +M       D +A+  +++ C   
Sbjct: 133 SELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYK----DQVAWNVMITGCLKC 188

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM---PMEPNERI 470
             ++  R  F   TE+      +  +  ++      G  +EA  + K+M      P+   
Sbjct: 189 KEMDSARELFDRFTEK-----DVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVT 243

Query: 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV------LLSNIYAKAG 516
             SL++AC +  +++ G     +I   A   S  YV       L ++YAK G
Sbjct: 244 ILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCG 295


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 172/546 (31%), Positives = 291/546 (53%), Gaps = 47/546 (8%)

Query: 34  CNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGL--KLMRTYGACGQMVDTRHVFDEIT 91
           CN +L  Y + + L   H  +    H    PS+     ++  Y   G + +   +FD  +
Sbjct: 53  CNILLQAYINSQALSDAHKLL----HFMPQPSVVSYNTILSGYFKFGLVSEAIKLFDGTS 108

Query: 92  NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
            ++   +N+++   V N+   + L  +  M      PD +TY  ++  C     L  G Q
Sbjct: 109 KRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFTYAIIIPCCD----LGFGQQ 164

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +H  +VKV  D + F G  L+ MY + G + +AR+V + MPS+ +VTWN+M++ Y++ GR
Sbjct: 165 VHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKYGR 224

Query: 212 FDEALDVCREMESLRIKPDADTMASLL--------------------------PSVTNTS 245
            D+++ + R++    I  D  T A +L                             TN +
Sbjct: 225 GDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVFEAMQVHSLIIERGFCSDRFTNNA 284

Query: 246 PEN-------VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
             N       V S   +F ++ ++++VSW V+I  +  +    EA+ L+ QM++  IEPN
Sbjct: 285 LVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDIEPN 344

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVER-KKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           + +   +L AC D +A   GR  H  V +   L  ++ + +A+VDMY+KCG + +A   F
Sbjct: 345 SFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKCGEMGDALRAF 404

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM---SGLCPDSIAFVSVLSACSHAG 414
            +M  +D+ SW  +I  Y  +G G  A+ L+++M++   SG+ P+ + FV VL ACSH G
Sbjct: 405 QEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVTFVGVLCACSHNG 464

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
           LL+EG  YFK M +++ + P  EH+ C+VDLLGRAG ++EA  LI  +P++P+  +WG+L
Sbjct: 465 LLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLGRAGLLQEAEALILALPIKPDNVMWGAL 524

Query: 475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534
           + AC L+ ++ +    A+H++   P  S  YVLL+N Y   G WG+   +R+ M ++G++
Sbjct: 525 LGACKLHGDVQMTRRTAEHLYTNEPRNSSNYVLLANSYTDIGEWGEAVEIREVMEARGVE 584

Query: 535 KMPGAS 540
           K  G S
Sbjct: 585 KTAGCS 590



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 176/399 (44%), Gaps = 64/399 (16%)

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY----- 206
           +H S+VK GL  +++  N L+  Y     L +A ++L+ MP   VV++N++++GY     
Sbjct: 37  LHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNTILSGYFKFGL 96

Query: 207 --------------------------AQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
                                      +N +  E L    +M    ++PD  T A ++P 
Sbjct: 97  VSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFTYAIIIPC 156

Query: 241 VTNTSPENVLS-----------------------------VKEMFLKLDNKNLVSWNVMI 271
                 + V +                              +++F  + ++ LV+WN MI
Sbjct: 157 CDLGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVTWNAMI 216

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           + Y+      +++ L+ Q+   GI  +  + A VL        +    ++H  +  +   
Sbjct: 217 SCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVFEAMQVHSLIIERGFC 276

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            +    NALV++Y+KCG +  A  +F+++  QDVVSWT +I  +  SG   +A+ LF +M
Sbjct: 277 SDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQM 336

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
            +  + P+S  F  +L AC+ A   ++GR++  ++ +   L   +   + +VD+  + G+
Sbjct: 337 QLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKCGE 396

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
           + +A    ++MP    ER   S     C Y+    G+ A
Sbjct: 397 MGDALRAFQEMP----ERDIASWNGIICGYAQNGAGMKA 431


>gi|224116552|ref|XP_002331925.1| predicted protein [Populus trichocarpa]
 gi|222874597|gb|EEF11728.1| predicted protein [Populus trichocarpa]
          Length = 530

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 176/514 (34%), Positives = 263/514 (51%), Gaps = 39/514 (7%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +L    D+ TLK++HAQ +    L     +  KL+  Y   G   D + VF  I + + V
Sbjct: 9   LLQSCADLVTLKQIHAQALTQGLLFIEQPLACKLVNRYAKLGNPRDAQKVFGYIQDPDRV 68

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +  LI  Y++  L   A  V+  +   G  PD ++    L AC     LL G  +H  +
Sbjct: 69  TYTSLINLYLSTQLPIKAFSVFSKLVNEGLRPDSHSVVGALSACGKKQDLLNGKLVHGMI 128

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
            +  L  N   GN L+ MY + G +K A+ V   M  KDV +W S++ G+          
Sbjct: 129 FRFQLGANSIVGNALIDMYCRNGEIKIAQLVFKQMGIKDVSSWTSLLNGFV--------- 179

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
            +C  +ES R                            +F ++  +N V+W  MI  Y  
Sbjct: 180 -MCNGLESAR---------------------------RVFDEMPWRNDVAWTAMITGYVR 211

Query: 277 NSMPAEAVDLYLQMEVHGI-EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
             MP   ++++ QM+  G  +P  I+  +VL  C DL A   G+ +H Y+ +  L   + 
Sbjct: 212 GGMPIRGLEMFRQMKAEGENQPTVITAVAVLSGCADLGAHDHGQAVHGYISKVNLDKGVT 271

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           + NAL+DMY+K G +  A  +FD++  +DV SWT+MISA+   G+G  A+ +F  ML SG
Sbjct: 272 VSNALMDMYSKGGCVESAMKIFDRLVKKDVFSWTTMISAHSSHGKGNHALEVFYDMLESG 331

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + P+ + F+ VLS CSH+GLL E    F  M + Y   P+IEH+ C+VDLL RAG +EEA
Sbjct: 332 VIPNDVTFLLVLSGCSHSGLLVEANKLFNGMIQCYGFEPKIEHYGCMVDLLCRAGLLEEA 391

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
            +LI  MPM+P+  IW SL++AC    N+ +  +A   I  L P+  G YVLLSNIY  A
Sbjct: 392 KELIDNMPMDPDAVIWRSLLSACMNQRNLGLAEIAGKKIIELEPHDDGVYVLLSNIYHVA 451

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
            R  D +++RK M  + + K P  S +E+N  V 
Sbjct: 452 NRMKDARKMRKMMGDQKVMKKPACSYIELNGVVH 485


>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
 gi|194692242|gb|ACF80205.1| unknown [Zea mays]
 gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
          Length = 590

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 172/471 (36%), Positives = 258/471 (54%), Gaps = 42/471 (8%)

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           AL  +  M   G  PD YT+P VLKAC  +     GL +H   V+ GL  +LF  N L++
Sbjct: 97  ALLYFARMRRCGVRPDAYTFPAVLKACGCAPGCRAGLLVHAEAVRRGLAADLFTVNALIS 156

Query: 174 MYGKCGCLKEARRVLNDMP--SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA 231
            Y +   ++  R+V ++    S+D+V+WNSMVAGY   G    A ++  EM      P  
Sbjct: 157 FYCRILDIRSGRKVFDEAGGVSRDLVSWNSMVAGYVGCGEMGLAQEMFDEM------PQK 210

Query: 232 DTM--ASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNS----------- 278
           DT   A+L+          V   +E+F ++  ++LV WN MI  YA +            
Sbjct: 211 DTFSWATLIDGYGKQGGAGVDRARELFDQMPERDLVCWNSMIDGYARHGRMDEARSLFEE 270

Query: 279 MPA--------------------EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           MP                     EA++ +  M   G+ P+ I+    + AC  L AL  G
Sbjct: 271 MPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRPDRIAAVGAVSACAQLGALEQG 330

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           R +H Y+E+KKL  ++ ++ AL+DMY KCG L  A  +F+ M  + VV+W  MI   G  
Sbjct: 331 RWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAERSVVTWNVMIVGLGTH 390

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           G G DAV LF +M    +  D ++ + +L+AC+HAGL+ EG   F  M + + + P++EH
Sbjct: 391 GFGLDAVTLFHRMEAESVAVDDLSVLGMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEH 450

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
           +  LVDLLGRAG++++A   I+ MPMEP   +WGSL+AAC  +S +++  L+ + +  L 
Sbjct: 451 YGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAACRSHSCVELAELSVERLADLG 510

Query: 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV-EMNDQVQ 548
            + SG YVLLSNIYA  G WGDV R+RK M+ +G++K  G SV E++ ++ 
Sbjct: 511 ADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGRSVIEVDGEIH 561



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 86/172 (50%)

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y   G+M + R +F+E+  +NV+ ++++I  +V+     +AL  +++M   G  PD    
Sbjct: 255 YARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRPDRIAA 314

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
              + AC+   +L  G  +H  + K  L  ++     L+ MY KCGCL  A  +   M  
Sbjct: 315 VGAVSACAQLGALEQGRWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAE 374

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           + VVTWN M+ G   +G   +A+ +   ME+  +  D  ++  +L + T+  
Sbjct: 375 RSVVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVAVDDLSVLGMLTACTHAG 426



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 15/218 (6%)

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           ++  +WN  I ++A  + P  A+  + +M   G+ P+A +  +VL ACG       G  +
Sbjct: 77  RDPFAWNTAIRLHAP-ARPRAALLYFARMRRCGVRPDAYTFPAVLKACGCAPGCRAGLLV 135

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR--CQDVVSWTSMISAYGMSG 379
           H    R+ L  +L   NAL+  Y +   +   R VFD+     +D+VSW SM++ Y   G
Sbjct: 136 HAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEAGGVSRDLVSWNSMVAGYVGCG 195

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG--LLEEGRYYFKIMTEQYKLVPRIE 437
           +   A  +F +M       D+ ++ +++      G   ++  R  F  M E+  +     
Sbjct: 196 EMGLAQEMFDEMPQK----DTFSWATLIDGYGKQGGAGVDRARELFDQMPERDLVC---- 247

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
            +  ++D   R G+++EA  L ++MP E N   W  ++
Sbjct: 248 -WNSMIDGYARHGRMDEARSLFEEMP-ERNVISWSIVI 283



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 10/181 (5%)

Query: 57  NQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALH 116
            + L S+  +   L+  Y  CG +     +F+ +  ++VV +NV+I     +    DA+ 
Sbjct: 339 KKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAERSVVTWNVMIVGLGTHGFGLDAVT 398

Query: 117 VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYNLFNGNGLVAMY 175
           ++  M       D  +   +L AC+ +  +  GL+I   + K  G+D  + +   LV + 
Sbjct: 399 LFHRMEAESVAVDDLSVLGMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLL 458

Query: 176 GKCGCLKEARRVLNDMPSKDVVT-WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
           G+ G L +AR  +  MP +     W S++A    +         C E+  L ++  AD  
Sbjct: 459 GRAGRLDQARHAIETMPMEPTPELWGSLLAACRSHS--------CVELAELSVERLADLG 510

Query: 235 A 235
           A
Sbjct: 511 A 511


>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 755

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 170/512 (33%), Positives = 276/512 (53%), Gaps = 33/512 (6%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S+ ++   ++  YG CG +  +R +FD + ++++V +N LI +Y       + L + K M
Sbjct: 192 SDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTM 251

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
            + GF+    T+  VL   +    L +G  +H  +++ G   +      L+ +Y K G +
Sbjct: 252 RLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKI 311

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
             A R+      KDVV W +M++G  QNG  D+AL V R+M    +KP   TMAS++ + 
Sbjct: 312 DIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITAC 371

Query: 242 TNTSPENVL--------------------SVKEMFLK-------------LDNKNLVSWN 268
                 N+                     S+  M+ K             ++ ++LVSWN
Sbjct: 372 AQLGSYNLGTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWN 431

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328
            M+  YA N    EA+ L+ +M      P++I++ S+L  C     L LG+ IH +V R 
Sbjct: 432 AMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRN 491

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
            L+P + ++ +LVDMY KCG L  A+  F+QM   D+VSW+++I  YG  G+G  A+  +
Sbjct: 492 GLRPCILVDTSLVDMYCKCGDLDTAQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFY 551

Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
           SK L SG+ P+ + F+SVLS+CSH GL+E+G   ++ MT+ + + P +EH AC+VDLL R
Sbjct: 552 SKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTKDFGIAPDLEHHACVVDLLSR 611

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508
           AG+VEEAY++ K+   +P   + G ++ AC    N ++G   A+ I  L P  +G +V L
Sbjct: 612 AGRVEEAYNVYKKKFPDPVLDVLGIILDACRANGNNELGDTIANDILMLRPMDAGNFVQL 671

Query: 509 SNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           ++ YA   +W +V     +M S G+KK+PG S
Sbjct: 672 AHCYASINKWEEVGEAWTYMRSLGLKKIPGWS 703



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/448 (28%), Positives = 209/448 (46%), Gaps = 40/448 (8%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           LH +I+++  L  +  I   L+  Y   G     R VFD +  +NVV +  +I  Y    
Sbjct: 83  LHQRILVSG-LSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTG 141

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
              +A  ++  M   G  P   T   VL    G + L     +H   +  G   ++   N
Sbjct: 142 RVPEAFSLFDEMRRQGIQPSSVT---VLSLLFGVSELAHVQCLHGCAILYGFMSDINLSN 198

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            ++ +YGKCG ++ +R++ + M  +D+V+WNS+++ YAQ G   E L + + M     + 
Sbjct: 199 SMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEA 258

Query: 230 DADTMASLLPSVTNTSPENVLS----------------------------------VKEM 255
              T  S+L SV  +  E  L                                      M
Sbjct: 259 GPQTFGSVL-SVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRM 317

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F +  +K++V W  MI+    N    +A+ ++ QM   G++P+  ++ASV+ AC  L + 
Sbjct: 318 FERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSY 377

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
            LG  I  Y+ R++L  ++  +N+LV MYAKCG L ++  VFD M  +D+VSW +M++ Y
Sbjct: 378 NLGTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGY 437

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
             +G   +A+ LF++M      PDSI  VS+L  C+  G L  G++    +     L P 
Sbjct: 438 AQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRN-GLRPC 496

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           I     LVD+  + G ++ A     QMP
Sbjct: 497 ILVDTSLVDMYCKCGDLDTAQRCFNQMP 524



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 159/351 (45%), Gaps = 35/351 (9%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           ++K  + LH QI+     + +  +   L+  Y   G++     +F+  ++K+VV +  +I
Sbjct: 275 ELKLGRCLHGQIL-RAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMI 333

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
              V N     AL V++ M   G  P   T   V+ AC+   S  +G  I   +++  L 
Sbjct: 334 SGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQELP 393

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            ++   N LV MY KCG L ++  V + M  +D+V+WN+MV GYAQNG   EAL +  EM
Sbjct: 394 LDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEM 453

Query: 223 ESLRIKPDADTMASLLPSVTNTSP---------------------------------ENV 249
            S    PD+ T+ SLL    +T                                    ++
Sbjct: 454 RSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDL 513

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            + +  F ++ + +LVSW+ +I  Y  +     A+  Y +    G++PN +   SVL +C
Sbjct: 514 DTAQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSC 573

Query: 310 GDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
                +  G  I+  + +   + P+L     +VD+ ++ G + EA  V+ +
Sbjct: 574 SHNGLVEQGLNIYESMTKDFGIAPDLEHHACVVDLLSRAGRVEEAYNVYKK 624



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 161/380 (42%), Gaps = 75/380 (19%)

Query: 99  NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
           N  I  +     ++  L  Y +M       D YT+P +LKACS  N   +GL +H  ++ 
Sbjct: 30  NATINHHSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILV 89

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
            GL                               S D    +S++  YA+ G  D A   
Sbjct: 90  SGL-------------------------------SLDAYIASSLINFYAKFGFADVA--- 115

Query: 219 CREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNS 278
                                             +++F  +  +N+V W  +I  Y+   
Sbjct: 116 ----------------------------------RKVFDYMPERNVVPWTTIIGCYSRTG 141

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
              EA  L+ +M   GI+P++++V S+L    +L+ +   + +H          ++ L N
Sbjct: 142 RVPEAFSLFDEMRRQGIQPSSVTVLSLLFGVSELAHV---QCLHGCAILYGFMSDINLSN 198

Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           +++++Y KCG++  +R +FD M  +D+VSW S+ISAY   G   + + L   M + G   
Sbjct: 199 SMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEA 258

Query: 399 DSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
               F SVLS  +  G L+ GR  + +I+   + L   +E    +V L G  GK++ A+ 
Sbjct: 259 GPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKG--GKIDIAFR 316

Query: 458 LIKQMPMEPNERIWGSLVAA 477
           + ++   + +  +W ++++ 
Sbjct: 317 MFER-SSDKDVVLWTAMISG 335



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 11/215 (5%)

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           S N  I  ++      + +  Y  M    +  +A +  S+L AC  L+   LG  +H+ +
Sbjct: 28  SVNATINHHSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRI 87

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
               L  +  + ++L++ YAK G    AR VFD M  ++VV WT++I  Y  +G+  +A 
Sbjct: 88  LVSGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAF 147

Query: 386 ALFSKMLMSGLCPDSIAFVSVL---SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL 442
           +LF +M   G+ P S+  +S+L   S  +H   L      +  M++       I     +
Sbjct: 148 SLFDEMRRQGIQPSSVTVLSLLFGVSELAHVQCLHGCAILYGFMSD-------INLSNSM 200

Query: 443 VDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           +++ G+ G +E +  L   M    +   W SL++A
Sbjct: 201 LNVYGKCGNIEYSRKLFDYMDHR-DLVSWNSLISA 234


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 174/556 (31%), Positives = 302/556 (54%), Gaps = 41/556 (7%)

Query: 27  TLLS-GDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH 85
           T+LS  +AC+++      ++  + +H   ++ + + SN S+   L+  YG  G +     
Sbjct: 203 TMLSVTEACSEL----GSLRLGRSVHG-YVVRREIESNASLNNSLIVMYGKLGDLYSAER 257

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +F+ +  +    +  +I  Y  +  + +AL+V+  M     +P+  T   VL AC+    
Sbjct: 258 LFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGR 317

Query: 146 LLVGLQIHCSVVKVGLDYNL-FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
           +  G  +H  V++  +D  L F G  L+ +Y   G L++  +V   +  K +++WN++++
Sbjct: 318 VKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLIS 377

Query: 205 GYAQNGRFDEALDVCREMESLRIKPD----------------ADTMASLLPSVTNTSPEN 248
            + +NG+ +EAL +  +M++  + PD                +   A +   +  T   N
Sbjct: 378 IFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFN 437

Query: 249 ----------------VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
                           V S  +MF K+  K+LV+WN MI  ++ N    EA+ L+ QM +
Sbjct: 438 DFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYM 497

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
           + ++ + ++  SV+ AC  L  L  G+ +H  +    L+ +  L+ AL DMY+KCG L  
Sbjct: 498 NCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQM 557

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           A  VFD+M  + +VSW+ MI+ YGM GQ    ++LF++ML SG+ P+ I F+ +LSACSH
Sbjct: 558 AHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSH 617

Query: 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG 472
           AG +EEG+ YF  M+E + + P+ +HFAC+VDLL RAG +  AY +I  +P   N  IWG
Sbjct: 618 AGAVEEGKLYFNSMSE-FGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWG 676

Query: 473 SLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532
           +L+  C ++  +DI      ++  +    +GYY LLSNIYA+ G W    +VR  M SKG
Sbjct: 677 ALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKG 736

Query: 533 IKKMPG-ASVEMNDQV 547
           ++K+PG +++E++ ++
Sbjct: 737 LRKVPGYSTIEIDKKI 752



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 144/527 (27%), Positives = 262/527 (49%), Gaps = 46/527 (8%)

Query: 41  YPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           + D+    K+H ++I      S+  +   L+  YG    + D    FD +  ++VV ++ 
Sbjct: 113 FGDLSVGGKVHGRVI-KCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSS 171

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           ++ ++V N    + L ++  M     +PD  T   V +ACS   SL +G  +H  VV+  
Sbjct: 172 IVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRRE 231

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
           ++ N    N L+ MYGK G L  A R+  ++P +    W  M++ Y Q+G F EAL+V  
Sbjct: 232 IESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFA 291

Query: 221 EMESLRIKPDADTMASLL-------------------------PSVTNTSPE-------- 247
           +M+  +++P+  TM  +L                         P +    P         
Sbjct: 292 KMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADT 351

Query: 248 -NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
            N+    ++F  +  K ++SWN +I+++  N  P EA+ L++QM+  G+ P++ S+AS L
Sbjct: 352 GNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSL 411

Query: 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366
            ACG +S   LG +IH Y+  K    N  ++NAL+DMYAKCG +  A  +F++++ + +V
Sbjct: 412 SACGTISFSQLGAQIHGYI-IKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLV 470

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY-YFKI 425
           +W SMI  +  +G   +A+ LF +M M+ +  D + F+SV+ ACSH G LE+G++ + K+
Sbjct: 471 TWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKL 530

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           +   Y L         L D+  + G+++ A+ +  +M  E +   W  ++A   ++  ++
Sbjct: 531 I--MYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMS-ERSIVSWSVMIAGYGMHGQIN 587

Query: 486 IGILAADHIF--HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530
             I   + +    + PN     +   +I +     G V+  + + NS
Sbjct: 588 ATISLFNQMLGSGIKPND----ITFMHILSACSHAGAVEEGKLYFNS 630



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 143/518 (27%), Positives = 247/518 (47%), Gaps = 53/518 (10%)

Query: 46  TLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           TL +LHA + I   LH +P    KL+ +Y   G    ++ VFD     +   + VLI+ Y
Sbjct: 16  TLTQLHAHLFITG-LHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCY 74

Query: 106 VNNYLYYDALHVYKNMSVHG-FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
           V    + +A+ +Y  M          + +P VLKACSG   L VG ++H  V+K G + +
Sbjct: 75  VWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESD 134

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
                 L+ MYG+  CL +A +  + MP +DVV W+S+V  + QNG+  E LD+  +M S
Sbjct: 135 AVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMIS 194

Query: 225 LRIKPDADTMASLLPSVT----------------------NTSPENVL-----------S 251
             ++PD+ TM S+  + +                      N S  N L           S
Sbjct: 195 EAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYS 254

Query: 252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
            + +F  +  +    W  MI+ Y  +    EA++++ +M+   +EPN +++  VL AC  
Sbjct: 255 AERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACAR 314

Query: 312 LSALLLGRKIHRYVERKKLQPNLR-LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           L  +  GR +H +V R+ + P L  L  AL+++YA  G+L +   VF+ ++ + ++SW +
Sbjct: 315 LGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNT 374

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           +IS +  +GQ  +A+ LF +M   GL PDS +  S LSAC      + G      + +  
Sbjct: 375 LISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG 434

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL----------VAACCL 480
                +++   L+D+  + G V  A  + +++  E +   W S+          V A  L
Sbjct: 435 NFNDFVQN--ALIDMYAKCGFVHSANKMFEKIK-EKSLVTWNSMICGFSQNGYSVEAITL 491

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
           +  M +  +  D +  L+  Q+  ++     Y + G+W
Sbjct: 492 FDQMYMNCVKMDKLTFLSVIQACSHLG----YLEKGKW 525



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 125/284 (44%), Gaps = 21/284 (7%)

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPAC 309
           S K +F      +   W V+I  Y       EAV LY +M      + +     SVL AC
Sbjct: 51  SSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKAC 110

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
                L +G K+H  V +   + +  +E +L+ MY +   L +A   FD M  +DVV+W+
Sbjct: 111 SGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWS 170

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           S++  +  +GQ  + + +FS+M+   + PDS+  +SV  ACS  G L  GR         
Sbjct: 171 SIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGR-----SVHG 225

Query: 430 YKLVPRIEHFA----CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVA----ACCLY 481
           Y +   IE  A     L+ + G+ G +  A  L + +P       W  +++    + C  
Sbjct: 226 YVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAP-WTPMISCYNQSGCFQ 284

Query: 482 SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVR 525
             ++  + A    F + PNQ    V +  +     R G VK  R
Sbjct: 285 EALN--VFAKMQEFKMEPNQ----VTMVGVLCACARLGRVKEGR 322


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 182/589 (30%), Positives = 295/589 (50%), Gaps = 89/589 (15%)

Query: 46  TLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           TL +LHA + I   LH +P    KL+ +Y   G    ++ VFD     +   + VLI+ Y
Sbjct: 363 TLTQLHAHLFITG-LHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCY 421

Query: 106 VNNYLYYDALHVYKNMSVHGFDP-DCYTYPCVLKACSGSNSLLV---------------- 148
           V    + +A+ +Y  M          + +P VLKACSG   L V                
Sbjct: 422 VWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQ 481

Query: 149 ------------------------------------GLQIHCSVVKVGLDYNL-FNGNGL 171
                                               G  +H  V++  +D  L F G  L
Sbjct: 482 MISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPAL 541

Query: 172 VAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD- 230
           + +Y   G L++  +V   +  K +++WN++++ + +NG+ +EAL +  +M++  + PD 
Sbjct: 542 MELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDS 601

Query: 231 ---------------ADTMASLLPSVTNTSPEN----------------VLSVKEMFLKL 259
                          +   A +   +  T   N                V S  +MF K+
Sbjct: 602 YSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKI 661

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
             K+LV+WN MI  ++ N    EA+ L+ QM ++ ++ + ++  SV+ AC  L  L  G+
Sbjct: 662 KEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGK 721

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
            +H  +    L+ +  L+ AL DMY+KCG L  A  VFD+M  + +VSW+ MI+ YGM G
Sbjct: 722 WVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHG 781

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
           Q    ++LF++ML SG+ P+ I F+ +LSACSHAG +EEG+ YF  M+E + + P+ +HF
Sbjct: 782 QINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSE-FGVEPKHDHF 840

Query: 440 ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
           AC+VDLL RAG +  AY +I  +P   N  IWG+L+  C ++  +DI      ++  +  
Sbjct: 841 ACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDT 900

Query: 500 NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
             +GYY LLSNIYA+ G W    +VR  M SKG++K+PG +++E++ ++
Sbjct: 901 ADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKI 949


>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
          Length = 545

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 167/505 (33%), Positives = 278/505 (55%), Gaps = 15/505 (2%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGAC--GQMVDTRHVFDEITNKNVVFFNVL 101
           ++ +K++HA + +   L S+PS   +L+        G +     VFD+I   +   +N L
Sbjct: 21  LRHIKQMHAVMALRGFL-SDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTL 79

Query: 102 IRSYVNNYLYYDALHVYKNM----SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           IR   +     DA+ +Y  M       G  PD  T+P VL+AC+   +   G+Q+H  VV
Sbjct: 80  IRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVV 139

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           K G + + F  N L+ M+  CG L  A  + +    +D V W++M+ G A+ G    A D
Sbjct: 140 KAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARD 199

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
           +  E       P  D ++  +         ++   +E+F ++  +++VSWNVMI+ Y   
Sbjct: 200 LFDEC------PVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRC 253

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR-- 335
                A++L+ QM+  G +P+ +++ S+L AC D   L +G+++H  +     +      
Sbjct: 254 GSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVV 313

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           L NAL+DMYAKCGS+  A  VF  MR +DV +W S++    + G   +++ +F KML   
Sbjct: 314 LGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGK 373

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + PD I FV+VL ACSH G++++GR +F +M  +Y++ P I+H+ C+VD+LGRAG ++EA
Sbjct: 374 VRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEA 433

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
           ++ I  M  EPN  IW +L++AC ++  +++   A   +     ++SG YVLLSNIYA  
Sbjct: 434 FEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASV 493

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS 540
           G W   +++RK M+  G+ K  G +
Sbjct: 494 GEWFGSEKMRKLMDDSGVNKEAGQT 518


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 257/460 (55%), Gaps = 34/460 (7%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M++ G     + Y   + AC    +L  G Q+H  ++       +F G  LV MY +CG 
Sbjct: 1   MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 60

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           L +AR VL+ MP + VV+W +M++GY+Q  R  EALD+  +M      P+  T+A++L S
Sbjct: 61  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 120

Query: 241 VTN---------------------------------TSPENVLSVKEMFLKLDNKNLVSW 267
            +                                     EN+   + +F  L  +++VS 
Sbjct: 121 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSC 180

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
             +I+ YA   +  EA+DL+ Q+   G++ N ++  +++ A   L++L  G+++H  + R
Sbjct: 181 TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILR 240

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
           K+L   + L+N+L+DMY+KCG L  +R VFD M  + VVSW +M+  YG  G G++ ++L
Sbjct: 241 KELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISL 300

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           F K L   + PDS+  ++VLS CSH GL++EG   F  + ++   +    H+ C++DLLG
Sbjct: 301 F-KDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLG 359

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507
           R+G++E+A +LI+ MP E    IWGSL+ AC +++N+ +G L A  +  + P  +G YV+
Sbjct: 360 RSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVI 419

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQV 547
           LSNIYA AG W DV +VRK M  K + K PG S  + D+V
Sbjct: 420 LSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKV 459



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 180/364 (49%), Gaps = 41/364 (11%)

Query: 48  KKLHAQIIINQHLHSNPSI--GLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           +++HA++I  ++    P++  G +L+  Y  CG + D R+V D +  ++VV +  +I  Y
Sbjct: 30  RQVHARMITARY---RPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGY 86

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
                + +AL ++  M   G  P+ YT   VL +CSG  S+  G Q+H  +VK   + ++
Sbjct: 87  SQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHM 146

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           F G+ L+ MY K   ++EARRV + +P +DVV+  ++++GYAQ G  +EALD+ R++ S 
Sbjct: 147 FVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSE 206

Query: 226 RIKPDADTMASLLPSVTNTSPEN---------------------------------VLSV 252
            ++ +  T  +L+ +++  +  +                                 +L  
Sbjct: 207 GMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYS 266

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           + +F  +  +++VSWN M+  Y  + +  E + L+  +    ++P+++++ +VL  C   
Sbjct: 267 RRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHG 325

Query: 313 SALLLGRKIH-RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTS 370
             +  G  I    V+ +    +      ++D+  + G L +A  + + M  +   S W S
Sbjct: 326 GLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGS 385

Query: 371 MISA 374
           ++ A
Sbjct: 386 LLGA 389


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 165/518 (31%), Positives = 278/518 (53%), Gaps = 31/518 (5%)

Query: 54  IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
           +++   L     +   L+  Y  CG +   R +FD+   K+VV +N +I  Y  N L  +
Sbjct: 223 VVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLE 282

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           AL ++ +M ++       ++  ++K C+    L    Q+HCSVVK G  ++      L+ 
Sbjct: 283 ALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMV 342

Query: 174 MYGKCGCLKEARRVLNDMPS-KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
            Y KC  + +A R+  +     +VV+W +M++G+ QN   +EA+ +  EM+   ++P+  
Sbjct: 343 AYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEF 402

Query: 233 TMASLLPSVTNTSPENVLS-----------------------------VKEMFLKLDNKN 263
           T + +L ++   SP  V +                               ++F  +DNK+
Sbjct: 403 TYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKD 462

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL-LGRKIH 322
           +V+W+ M+A YA       A+ ++ ++   G++PN  + +S+L  C   +A +  G++ H
Sbjct: 463 IVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFH 522

Query: 323 RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY 382
            +  + +L  +L + +AL+ MYAK G +  A  VF + R +D+VSW SMIS Y   GQ  
Sbjct: 523 GFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAM 582

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL 442
            A+ +F +M    +  DS+ F+ V +AC+HAGL+EEG  YF IM    K+ P  EH +C+
Sbjct: 583 KALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCM 642

Query: 443 VDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS 502
           VDL  RAG++E+A  +I  MP      IW +++AAC ++   ++G LAA+ I  + P  S
Sbjct: 643 VDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDS 702

Query: 503 GYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
             YVLLSN+YA++G W +  +VRK MN + +KK PG S
Sbjct: 703 AAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYS 740



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 129/469 (27%), Positives = 221/469 (47%), Gaps = 50/469 (10%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LH Q I    L  + S+G  L+ TY       D R+VFDE+  +NVV +  LI  Y  
Sbjct: 117 RQLHCQCIKFGFL-DDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYAR 175

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N L  + L ++  M   G  P+ +T+   L   +       GLQ+H  VVK GLD  +  
Sbjct: 176 NSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 235

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ +Y KCG +++AR + +    K VVTWNSM++GYA NG   EAL +   M    +
Sbjct: 236 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHV 295

Query: 228 KPDADTMASLLPSVTN------TSPENVLSVKEMFLKLDN-------------------- 261
           +    + AS++    N      T   +   VK  F+   N                    
Sbjct: 296 RLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALR 355

Query: 262 --------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
                    N+VSW  MI+ +  N    EAV L+ +M+  G+ PN  + + +L A   +S
Sbjct: 356 LFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVIS 415

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
                 ++H  V +   + +  +  AL+D Y K G + EA  VF  +  +D+V+W++M++
Sbjct: 416 P----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLA 471

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC-SHAGLLEEGRYYFKIMTEQYKL 432
            Y  +G+   A+ +FS++   G+ P+   F S+L+ C +    + +G+ +       + +
Sbjct: 472 GYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQF-----HGFAI 526

Query: 433 VPRIEHFAC----LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             R++   C    L+ +  + G +E A ++ K+   E +   W S+++ 
Sbjct: 527 KSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQR-EKDLVSWNSMISG 574



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 115/486 (23%), Positives = 217/486 (44%), Gaps = 56/486 (11%)

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
           ++FD+  +++   +  L+  +  +    +A  ++ N+   G + DC  +  VLK  +   
Sbjct: 52  NLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATLC 111

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
             L G Q+HC  +K G   ++  G  LV  Y K    K+ R V ++M  ++VVTW ++++
Sbjct: 112 DELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLIS 171

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLP---------------------SVTN 243
           GYA+N   +E L +   M+    +P++ T A+ L                       +  
Sbjct: 172 GYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDK 231

Query: 244 TSP------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
           T P             NV   + +F K + K++V+WN MI+ YA N +  EA+ ++  M 
Sbjct: 232 TIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMR 291

Query: 292 VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351
           ++ +  +  S AS++  C +L  L    ++H  V +     +  +  AL+  Y+KC ++ 
Sbjct: 292 LNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAML 351

Query: 352 EARTVFDQMR-CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
           +A  +F +     +VVSWT+MIS +  +    +AV LFS+M   G+ P+   +  +L+A 
Sbjct: 352 DALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTAL 411

Query: 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA---------YDLIKQ 461
               ++     + +++   Y+    +     L+D   + GKV+EA          D++  
Sbjct: 412 P---VISPSEVHAQVVKTNYERSSTVG--TALLDAYVKLGKVDEAAKVFSGIDNKDIVAW 466

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
             M       G   AA  ++S +  G         + PN+  +  +L+   A     G  
Sbjct: 467 SAMLAGYAQAGETEAAIKIFSELTKG--------GVKPNEFTFSSILNVCAATTASMGQG 518

Query: 522 KRVRKF 527
           K+   F
Sbjct: 519 KQFHGF 524



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/371 (21%), Positives = 169/371 (45%), Gaps = 56/371 (15%)

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP---- 239
           A  + +  P +D  ++ S++ G++++GR  EA  +   ++ L ++ D    +S+L     
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 240 ---------------------------SVTNT--SPENVLSVKEMFLKLDNKNLVSWNVM 270
                                      S+ +T     N    + +F ++  +N+V+W  +
Sbjct: 110 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTL 169

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
           I+ YA NS+  E + L+++M+  G +PN+ + A+ L    +      G ++H  V +  L
Sbjct: 170 ISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGL 229

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
              + + N+L+++Y KCG++ +AR +FD+   + VV+W SMIS Y  +G   +A+ +F  
Sbjct: 230 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 289

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRY----------YFKIMTEQYKLVPRIEHFA 440
           M ++ +     +F S++  C++   L+E R+          Y  +  +  +    + +  
Sbjct: 290 MRLNHVRLSESSFASIIKLCAN---LKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSK 346

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD--IGILAADHIFHLA 498
           C+  L        +A  L K+     N   W ++++        +  +G+ +      + 
Sbjct: 347 CMAML--------DALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVR 398

Query: 499 PNQSGYYVLLS 509
           PN+  Y V+L+
Sbjct: 399 PNEFTYSVILT 409



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 109/196 (55%), Gaps = 2/196 (1%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           ++HAQ++   +  S+ ++G  L+  Y   G++ +   VF  I NK++V ++ ++  Y   
Sbjct: 418 EVHAQVVKTNYERSS-TVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQA 476

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN-SLLVGLQIHCSVVKVGLDYNLFN 167
                A+ ++  ++  G  P+ +T+  +L  C+ +  S+  G Q H   +K  LD +L  
Sbjct: 477 GETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCV 536

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            + L+ MY K G ++ A  V      KD+V+WNSM++GYAQ+G+  +ALDV +EM+  ++
Sbjct: 537 SSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKV 596

Query: 228 KPDADTMASLLPSVTN 243
           K D+ T   +  + T+
Sbjct: 597 KMDSVTFIGVFAACTH 612


>gi|147818972|emb|CAN67116.1| hypothetical protein VITISV_026465 [Vitis vinifera]
          Length = 1817

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 162/476 (34%), Positives = 266/476 (55%), Gaps = 36/476 (7%)

Query: 113  DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV 172
            +AL  +  M+  G  P  +     L +C+   +  +G+QIH  +++ G + NLF  + LV
Sbjct: 1299 EALESFXRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNLFLNSALV 1358

Query: 173  AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
             +Y KC  + +A+RV + M   D V+W S+++G+++NGR  EA+   +EM   +IKP+  
Sbjct: 1359 DLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGSQIKPNCV 1418

Query: 233  TMASLLPSVTNTSP-------------ENVLSVKE---------------------MFLK 258
            T  S + + T                 +    VK                      +F  
Sbjct: 1419 TYVSXISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQAVLLFGT 1478

Query: 259  LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
               ++ + +N MI+ Y+ N    EA+ L++ZM  +G+ P   ++ S+L ACG L+ L  G
Sbjct: 1479 TIERDNILFNSMISGYSQNLXGEEALKLFVZMRNNGLXPTDHTLTSILNACGSLTILQQG 1538

Query: 319  RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
            R++H  V +   + N+ + +AL+DMY+KCGS+ EAR VF Q   ++ V WTSMI+ Y  S
Sbjct: 1539 RQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFXQAVEKNTVLWTSMITGYAQS 1598

Query: 379  GQGYDAVALFSKMLMS-GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
            G+G + + LF +++   G  PD I F +VL+AC+HAG L++G  YF  M   Y LVP ++
Sbjct: 1599 GRGPEGLGLFERLVXEEGFTPDHICFTAVLTACNHAGFLDKGIDYFNQMRRDYGLVPDLD 1658

Query: 438  HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHL 497
             +ACLVDL  R G + +A +L++  P EPN  +WGS +++C LY   ++G  AAD +F +
Sbjct: 1659 QYACLVDLYVRNGHLRKAKELMEAXPXEPNSVMWGSFLSSCKLYGEAELGREAADKLFKM 1718

Query: 498  APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
             P  +  YV +++IYA+AG W +V  +RK M  KG++K  G S VE++ +V +  +
Sbjct: 1719 EPCSTAPYVAMASIYAQAGLWSEVVEIRKLMKQKGLRKSAGWSWVEVDKRVHVFXV 1774



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 184/423 (43%), Gaps = 49/423 (11%)

Query: 49   KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
            ++HA+II       N  +   L+  Y  C  +VD + VFD +   + V +  +I  +  N
Sbjct: 1337 QIHARII-QTGFEDNLFLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKN 1395

Query: 109  YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI-HCSVVKVGLDYNLFN 167
                +A+  +K M      P+C TY   + AC+G  ++     + H  VVK+G     F 
Sbjct: 1396 GRGKEAILFFKEMLGSQIKPNCVTYVSXISACTGLETIFDQCALLHAHVVKLGFGVKTFV 1455

Query: 168  GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
             + L+  Y KCG + +A  +      +D + +NSM++GY+QN   +EAL +  ZM +  +
Sbjct: 1456 VSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLXGEEALKLFVZMRNNGL 1515

Query: 228  KPDADTMASLLPSVTN-----------------TSPENVLSVKEM--------------- 255
             P   T+ S+L +  +                  S  NV  V  +               
Sbjct: 1516 XPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARC 1575

Query: 256  -FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDLS 313
             F +   KN V W  MI  YA +    E + L+ ++    G  P+ I   +VL AC    
Sbjct: 1576 VFXQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVXEEGFTPDHICFTAVLTACN--H 1633

Query: 314  ALLLGRKIHRYVERKK---LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWT 369
            A  L + I  + + ++   L P+L     LVD+Y + G L +A+ + +    + + V W 
Sbjct: 1634 AGFLDKGIDYFNQMRRDYGLVPDLDQYACLVDLYVRNGHLRKAKELMEAXPXEPNSVMWG 1693

Query: 370  SMISA---YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
            S +S+   YG +  G +A     KM      P    +V++ S  + AGL  E     K+M
Sbjct: 1694 SFLSSCKLYGEAELGREAADKLFKMEPCSTAP----YVAMASIYAQAGLWSEVVEIRKLM 1749

Query: 427  TEQ 429
             ++
Sbjct: 1750 KQK 1752



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 137/308 (44%), Gaps = 13/308 (4%)

Query: 70   LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
            L+  Y  CG++     +F     ++ + FN +I  Y  N    +AL ++  M  +G  P 
Sbjct: 1459 LIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLXGEEALKLFVZMRNNGLXPT 1518

Query: 130  CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             +T   +L AC     L  G Q+H  V K+G + N+F  + L+ MY KCG + EAR V  
Sbjct: 1519 DHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFX 1578

Query: 190  DMPSKDVVTWNSMVAGYAQNGRFDEALDVC-REMESLRIKPDADTMASLLPSVTNTS--P 246
                K+ V W SM+ GYAQ+GR  E L +  R +      PD     ++L +  +     
Sbjct: 1579 QAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVXEEGFTPDHICFTAVLTACNHAGFLD 1638

Query: 247  ENVLSVKEMFLKLD-NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
            + +    +M        +L  +  ++ +Y  N    +A +L   ME    EPN++   S 
Sbjct: 1639 KGIDYFNQMRRDYGLVPDLDQYACLVDLYVRNGHLRKAKEL---MEAXPXEPNSVMWGSF 1695

Query: 306  LPACGDLSALLLGRKIHRYVERKKLQP-NLRLENALVDMYAKCG---SLTEARTVFDQMR 361
            L +C       LGR+    +   K++P +     A+  +YA+ G    + E R +  Q  
Sbjct: 1696 LSSCKLYGEAELGREAADKL--FKMEPCSTAPYVAMASIYAQAGLWSEVVEIRKLMKQKG 1753

Query: 362  CQDVVSWT 369
             +    W+
Sbjct: 1754 LRKSAGWS 1761


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 160/482 (33%), Positives = 271/482 (56%), Gaps = 36/482 (7%)

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDP--DCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
           +I  +V N  + D++ V+ +M V G  P  D  T   VL A +    L +G+QI C  +K
Sbjct: 1   MISGFVKNSCFEDSIRVFGDM-VLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIK 59

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
            G   ++    GL++++ KCG ++ AR +  ++  KD+++ N+M++G+  NG  ++++ +
Sbjct: 60  CGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRL 119

Query: 219 CREMESLRIKPDADTMASLLPS----------------------VTNTSPENVLSV---- 252
            +E+ S   +  + T+  L+P                       V+++S    L+     
Sbjct: 120 FKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCR 179

Query: 253 -------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                  +++F +   K L SWN MI+    N +   A+ L+  M+ + + PN ++V S+
Sbjct: 180 LNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSI 239

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L AC  + AL LG  +H  ++  + + N+ +  AL+DMYAKCGS+T AR +FD M  ++ 
Sbjct: 240 LSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNE 299

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
           V+W +MIS YG+ G G +A+ LF  ML S + P  + F+SVL ACSHAGL++EG   F  
Sbjct: 300 VTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHT 359

Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           M   +   P  EH+AC+VD+LGRAG++++A + IK MP+EP   +WG+L+ AC ++ + +
Sbjct: 360 MVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTN 419

Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMND 545
           +  +A++ +F L P   GYYVL+SNIY+   ++     VR+    K + K PG ++    
Sbjct: 420 LAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIG 479

Query: 546 QV 547
           QV
Sbjct: 480 QV 481



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 91/177 (51%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S+ S+   L   Y    +M+  R +FDE   K +  +N +I     N L   A+ +++ M
Sbjct: 165 SHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTM 224

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
             +  +P+  T   +L AC+   +L +G  +H  +     + N++    L+ MY KCG +
Sbjct: 225 QKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSI 284

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238
             AR + + MP K+ VTWN+M++GY  +G   EAL +  +M S  +KP   T  S+L
Sbjct: 285 TVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVL 341



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 146/349 (41%), Gaps = 37/349 (10%)

Query: 49  KLHAQII---INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           KL  QI+   I    +S+ S+   L+  +  CG++   R +F EI  K+++  N +I  +
Sbjct: 48  KLGMQILCLAIKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGF 107

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
             N    D++ ++K +   G      T   ++   S      +   IH   VK+G+  + 
Sbjct: 108 TCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHS 167

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
                L  +Y +   +  AR++ ++   K + +WN+M++G  QNG  D A+ + + M+  
Sbjct: 168 SVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKN 227

Query: 226 RIKPDADTMASLLPSV-----------------TNTSPENV----------------LSV 252
            + P+  T+ S+L +                  +N    NV                   
Sbjct: 228 NVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVA 287

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           +E+F  +  KN V+WN MI+ Y  +    EA+ L+  M    ++P  ++  SVL AC   
Sbjct: 288 RELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHA 347

Query: 313 SALLLGRKI-HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
             +  G  I H  V     +P       +VD+  + G L +A      M
Sbjct: 348 GLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAM 396


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  305 bits (780), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 166/518 (32%), Positives = 281/518 (54%), Gaps = 45/518 (8%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD--TRHVFDEITNKNV 95
           LD   ++  +K++H  ++  + L  +  I  KL+RT    G  +D   R V + +  +N 
Sbjct: 56  LDDCINLNQIKQIHGHVL-RKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNP 114

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
             +  +IR Y     + +A+ +Y  M      P  +T+  +LKAC     L +G Q H  
Sbjct: 115 FLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQ 174

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
             ++     ++ GN ++ MY KC  +  AR+V ++MP +DV++W  ++A YA+ G     
Sbjct: 175 TFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVG----- 229

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
                                           N+    E+F  L  K++V+W  M+  +A
Sbjct: 230 --------------------------------NMECAAELFESLPTKDMVAWTAMVTGFA 257

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP--N 333
            N+ P EA++ + +ME  GI  + ++VA  + AC  L A     +  +  ++    P  +
Sbjct: 258 QNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDH 317

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML- 392
           + + +AL+DMY+KCG++ EA  VF  M  ++V +++SMI      G+  +A+ LF  M+ 
Sbjct: 318 VVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVT 377

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
            + + P+++ FV  L ACSH+GL+++GR  F  M + + + P  +H+ C+VDLLGR G++
Sbjct: 378 QTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRL 437

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
           +EA +LIK M +EP+  +WG+L+ AC +++N +I  +AA+H+F L P+  G Y+LLSN+Y
Sbjct: 438 QEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVY 497

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS--VEMNDQVQ 548
           A AG WG V RVRK +  KG+KK P  S  V+ N Q+ 
Sbjct: 498 ASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMH 535



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 7/187 (3%)

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE--ARTVFD 358
           S+ S L  C +L+ +   ++IH +V RK L  +  +   L+    K G   +  AR V +
Sbjct: 51  SLISKLDDCINLNQI---KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIE 107

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
            ++ ++   WT++I  Y + G+  +A+A++  M    + P S  F ++L AC     L  
Sbjct: 108 PVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNL 167

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           GR  F   T + +    +     ++D+  +   ++ A  +  +MP E +   W  L+AA 
Sbjct: 168 GR-QFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMP-ERDVISWTELIAAY 225

Query: 479 CLYSNMD 485
               NM+
Sbjct: 226 ARVGNME 232


>gi|218191314|gb|EEC73741.1| hypothetical protein OsI_08374 [Oryza sativa Indica Group]
          Length = 667

 Score =  305 bits (780), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 173/513 (33%), Positives = 275/513 (53%), Gaps = 34/513 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y +CG +     VF  + N+ VV +N +I   V N     AL V+  M+  G   D
Sbjct: 149 LISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGID 208

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   VL AC+ +  L  G  +H  V   GL   +   N L+ MYGKC  L++ARRV +
Sbjct: 209 RATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFD 268

Query: 190 DMP-SKDVVTWNSMVAGYAQNGRFDEALDV-CREMESLRIKPDADTMASLL------PSV 241
                KDVV+W +M+  Y  N R  EA+ + C+ + S    P+  TM  LL      PS 
Sbjct: 269 HCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSG 328

Query: 242 TNTSPENVLSVK--------------------------EMFLKLDNKNLVSWNVMIAVYA 275
            +    + L ++                           + L+  +    +WN  ++ Y 
Sbjct: 329 KHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKLMRLTLERGSWRAETWNAALSGYT 388

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            +    +A++L+ +M    + P++ ++AS+LPA  + + L  G+ IH ++       +  
Sbjct: 389 VSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTE 448

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           +   L+D+Y+K G L  A  +F  +  +DVV+WT++I+ Y + G    A+ L+ +M+ SG
Sbjct: 449 IATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYSIHGHARTAILLYDRMVESG 508

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
             P+++   ++L ACSHAG+++EG   FK M   + L+P  EH++CLVD+LGRAG++EEA
Sbjct: 509 GKPNTVTIATLLYACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEA 568

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
           + LI+ MP EP+  +WG+L+ AC L+ N++ G +AA  +F L P  +G YVLL NIYA A
Sbjct: 569 HRLIQDMPFEPSTSVWGALLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIYAAA 628

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQ 548
            RW DV+ VR+ M  +G+ K PG+S+     VQ
Sbjct: 629 DRWRDVQDVRRMMVERGLLKEPGSSLVEARSVQ 661



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 210/461 (45%), Gaps = 43/461 (9%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKN-VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
           L   Y ACG+     ++  ++     V F N L+RSY     + +AL VY  M       
Sbjct: 51  LFMVYCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMRAF---- 106

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D  T+P   KAC+G      G  +HC  +  G   + +  N L++MY  CG +  A  V 
Sbjct: 107 DHLTFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVF 166

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248
             M ++ VV+WN+++AG  +NG  + AL+V  EM +  +  D  T+ S+LP+       N
Sbjct: 167 GAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLN 226

Query: 249 V----------------LSVKEMFLKL------------------DNKNLVSWNVMIAVY 274
                            ++VK   + +                   +K++VSW  MI  Y
Sbjct: 227 TGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAY 286

Query: 275 ANNSMPAEAVDLYLQMEVHGIE-PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
             N    EA+ L  QM + G   PN +++  +L AC  + +    +  H    R  L+ +
Sbjct: 287 VLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSD 346

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
           + +E AL+D YA+CG +   R   ++   +   +W + +S Y +SG+   A+ LF +M+ 
Sbjct: 347 IAVETALIDAYARCGKMKLMRLTLERGSWR-AETWNAALSGYTVSGREKKAIELFKRMIA 405

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
             + PDS    S+L A + +  L+EG+     +      +   E    L+D+  +AG ++
Sbjct: 406 ESVRPDSATMASILPAYAESADLKEGKNIHCFLL-TLGFLRSTEIATGLIDVYSKAGDLD 464

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
            A+ L + +P E +   W +++A   ++ +    IL  D +
Sbjct: 465 AAWALFQWLP-EKDVVAWTTIIAGYSIHGHARTAILLYDRM 504



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 99/216 (45%), Gaps = 4/216 (1%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
           P  K  K  HA + I   L S+ ++   L+  Y  CG+M   R   +  + +   + N  
Sbjct: 326 PSGKHAKCTHA-LCIRLGLKSDIAVETALIDAYARCGKMKLMRLTLERGSWRAETW-NAA 383

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           +  Y  +     A+ ++K M      PD  T   +L A + S  L  G  IHC ++ +G 
Sbjct: 384 LSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGF 443

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             +     GL+ +Y K G L  A  +   +P KDVV W +++AGY+ +G    A+ +   
Sbjct: 444 LRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYSIHGHARTAILLYDR 503

Query: 222 MESLRIKPDADTMASLLPSVTNTS--PENVLSVKEM 255
           M     KP+  T+A+LL + ++     E +   K+M
Sbjct: 504 MVESGGKPNTVTIATLLYACSHAGMIDEGIKVFKDM 539


>gi|225454898|ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 156/473 (32%), Positives = 267/473 (56%), Gaps = 11/473 (2%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  CG   +    F E+ NK+++ +  +I +Y       + + ++  M V G  PD
Sbjct: 279 LLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPD 338

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
                C+L + S S  +      H  +++     +    N L++MY K G LK A +   
Sbjct: 339 GIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFG 398

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE-- 247
            +  ++   WN MV+GY        A  + R +    IK   D   S+  S+ +   +  
Sbjct: 399 RVNEQNFEAWNLMVSGYG-------ATHLARSIHCYMIKNLMDENVSVNNSLIDMYGKSG 451

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
           N+   + +F ++  +++V+WN +I+ YA+    AEA+ LY +M +  ++PN+ ++ SVL 
Sbjct: 452 NLTIARRIFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVSVLS 510

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           AC  L++L  G K+H Y+   K + NL +  AL+DMYAKCG L ++R +F+ M  +DV++
Sbjct: 511 ACSHLASLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMHERDVIT 570

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           W  MIS YGM G    A+  F +M  S   P+ + F++VLSAC+HAGL++EG+Y F  M 
Sbjct: 571 WNVMISGYGMHGDARSAIEFFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGKYLFGKM- 629

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
           + Y + P ++H+AC+VDLLGR+G ++EA  L+  MP+ P+  +WG+L+++C +++ +++G
Sbjct: 630 QDYSVAPNLKHYACMVDLLGRSGNLQEAEALVLSMPISPDGGVWGALLSSCKIHNEIEMG 689

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           I  A H         GYYV++SN+Y+  G+W + ++ R  M  +G++K  G S
Sbjct: 690 IRIAKHAIDSDVENDGYYVMISNMYSSIGKWEEAEKARGIMKERGVRKKTGWS 742



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 212/423 (50%), Gaps = 21/423 (4%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           + ++G   +  Y  CG + +   VFDEI  ++VV +  L+   V N      L     M 
Sbjct: 168 SSAVGSSFVYMYSKCGVLEEAYGVFDEILFRDVVAWTALVIGCVQNGESKMGLECLCEMH 227

Query: 123 VHGFD---PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179
             G D   P+  T     +AC    +LL G  +H  VVK G+DY+    + L++MY KCG
Sbjct: 228 RIGGDGERPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSLLLSMYSKCG 287

Query: 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239
             +EA R   ++ +KD+++W SM++ Y++ G   E +D+  EM    I PD   ++ +L 
Sbjct: 288 NPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLS 347

Query: 240 SVTNTSPENVLSVKEMFLKLDNKNL----VSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
           S +N+    V   K     +  ++     +  N ++++Y        A   + ++     
Sbjct: 348 SFSNSM--RVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNF 405

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
           E   + V+          A  L R IH Y+ +  +  N+ + N+L+DMY K G+LT AR 
Sbjct: 406 EAWNLMVSGY-------GATHLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARR 458

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           +F ++  +D+V+W ++IS+Y   G   +A++L+ KM++  L P+S   VSVLSACSH   
Sbjct: 459 IFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVSVLSACSHLAS 517

Query: 416 LEEG-RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
           LEEG + +  I   +++    I     L+D+  + G++E++ ++   M  E +   W  +
Sbjct: 518 LEEGEKVHNYINGGKFEFNLSIA--TALIDMYAKCGQLEKSREIFNSMH-ERDVITWNVM 574

Query: 475 VAA 477
           ++ 
Sbjct: 575 ISG 577



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 135/541 (24%), Positives = 246/541 (45%), Gaps = 70/541 (12%)

Query: 39  DKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFF 98
           ++   +KTL + HA II + +  +N  I  KL+  Y +  +   +  +FDEI +++   +
Sbjct: 43  NQISSLKTLLQSHAFIITSGY-SNNIFIASKLISLYASFHKPSCSTELFDEIPHRDAFLW 101

Query: 99  NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
           N +I+++ +N  Y  AL  Y+ M      P+ +T P ++ +C+    +  G  IH  V K
Sbjct: 102 NSIIKAHFSNGEYSRALDFYQWMRASEALPNHFTIPMIVASCAELELVNYGRSIHGLVSK 161

Query: 159 VGL-DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           +GL   +   G+  V MY KCG L+EA  V +++  +DVV W ++V G  QNG     L+
Sbjct: 162 LGLFSGSSAVGSSFVYMYSKCGVLEEAYGVFDEILFRDVVAWTALVIGCVQNGESKMGLE 221

Query: 218 VCREMESLRIKPDAD---------------TMASLLPS------VTNTSPENVLSVKEM- 255
              EM   RI  D +                + +LL        V  T  +    V+ + 
Sbjct: 222 CLCEMH--RIGGDGERPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSLL 279

Query: 256 ----------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                           F ++ NK+++SW  MI+ Y+      E +D++ +M V GI P+ 
Sbjct: 280 LSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDG 339

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           I ++ +L +  +   +   +  H  + R+    +  ++NAL+ MY K G L  A   F +
Sbjct: 340 IVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGR 399

Query: 360 MRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419
           +  Q+  +W  M+S YG +   + A ++   M+ + +  +     S++     +G L   
Sbjct: 400 VNEQNFEAWNLMVSGYGAT---HLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIA 456

Query: 420 RYYFKIMTEQYKLVPR-IEHFACLVDLLGRAGKVEEAYDLIKQMPME---PNERIWGSLV 475
           R  F         +PR I  +  L+      G   EA  L  +M +E   PN     S++
Sbjct: 457 RRIF-------CRIPRDIVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVSVL 509

Query: 476 AACCLYSNMDIGILAADHI------FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529
           +AC   ++++ G    ++I      F+L+   +     L ++YAK G+   +++ R+  N
Sbjct: 510 SACSHLASLEEGEKVHNYINGGKFEFNLSIATA-----LIDMYAKCGQ---LEKSREIFN 561

Query: 530 S 530
           S
Sbjct: 562 S 562



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 1/143 (0%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
           N SI   L+  Y  CGQ+  +R +F+ +  ++V+ +NV+I  Y  +     A+  ++ M 
Sbjct: 536 NLSIATALIDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEFFQQME 595

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
                P+  T+  VL AC+ +  +  G  +   +    +  NL +   +V + G+ G L+
Sbjct: 596 ESSAKPNGLTFLAVLSACAHAGLVKEGKYLFGKMQDYSVAPNLKHYACMVDLLGRSGNLQ 655

Query: 183 EARRVLNDMP-SKDVVTWNSMVA 204
           EA  ++  MP S D   W ++++
Sbjct: 656 EAEALVLSMPISPDGGVWGALLS 678



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 38/193 (19%), Positives = 85/193 (44%), Gaps = 2/193 (1%)

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
           EPN  +  + L +   +S+L    + H ++       N+ + + L+ +YA     + +  
Sbjct: 30  EPNDFNYLNHLLS-NQISSLKTLLQSHAFIITSGYSNNIFIASKLISLYASFHKPSCSTE 88

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           +FD++  +D   W S+I A+  +G+   A+  +  M  S   P+      ++++C+   L
Sbjct: 89  LFDEIPHRDAFLWNSIIKAHFSNGEYSRALDFYQWMRASEALPNHFTIPMIVASCAELEL 148

Query: 416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
           +  GR    ++++           +  V +  + G +EEAY +  ++    +   W +LV
Sbjct: 149 VNYGRSIHGLVSKLGLFSGSSAVGSSFVYMYSKCGVLEEAYGVFDEILFR-DVVAWTALV 207

Query: 476 AACCLYSNMDIGI 488
             C       +G+
Sbjct: 208 IGCVQNGESKMGL 220


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 176/520 (33%), Positives = 271/520 (52%), Gaps = 50/520 (9%)

Query: 38  LDKYPDIKTLKKLHAQII---INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
            +K   +  L++ H+QII   ++ H H  P + +           +     +FD I   +
Sbjct: 29  FEKCQSMSQLRQYHSQIIRLGLSSHNHLIPPL-INFCARASTSDALTYALKLFDSIPQPD 87

Query: 95  VVFFNVLIRSYVNNYLY--YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
              +N +I+ ++++ L      L +Y +M  +   P+ +T+P +L AC     +  G+QI
Sbjct: 88  AFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIAC---RKIQHGMQI 144

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
           H  + K G   +    N L+ MY     L+EARRV + +P  D V+W S+++GY++ G  
Sbjct: 145 HAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLI 204

Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIA 272
           DEA                 T+  L+P                      KN  SWN M+A
Sbjct: 205 DEAF----------------TIFQLMP---------------------QKNSASWNAMMA 227

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEP-NAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
            Y   +   EA  L+ +M+       +     ++L AC  L AL  G+ IH Y++R  ++
Sbjct: 228 AYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIE 287

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMR--CQDVVSWTSMISAYGMSGQGYDAVALFS 389
            + +L  A+VDMY KCG L +A  VF  +   C+ + SW  MI    M G G  A+ LF 
Sbjct: 288 LDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFK 347

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           +M    + PD I F+++L+AC+H+GL+EEGR YF  M   Y + PR+EHF C+VDLLGRA
Sbjct: 348 EMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRA 407

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G V EA  LI +MP+ P+  + G+L+ AC  + N+++G      +  L PN SG YVLL+
Sbjct: 408 GMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLA 467

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           N+YA AG+W D  +VRK M+ +G+KK PG S +E+   V 
Sbjct: 468 NLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGTVH 507



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 166/363 (45%), Gaps = 19/363 (5%)

Query: 3   AVVLLCRHFSTTKPVQALVLSTQYTLLSGDAC-NDILDKYPDIKTLKKLHAQIIINQHLH 61
           ++++ CR       + A +   ++   +   C N ++  Y   + L++  A+ + +   H
Sbjct: 130 SLLIACRKIQHGMQIHAHLF--KFGFGAHSVCLNSLIHMYVTFQALEE--ARRVFHTIPH 185

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
            +      L+  Y   G + +   +F  +  KN   +N ++ +YV    +++A  ++  M
Sbjct: 186 PDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRM 245

Query: 122 SVHGFDP-DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
                +  D +    +L AC+G  +L  G  IH  + + G++ +      +V MY KCGC
Sbjct: 246 KAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGC 305

Query: 181 LKEARRVLND--MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238
           L++A +V +   +P + + +WN M+ G A +G  + A+ + +EME  R+ PD  T  +LL
Sbjct: 306 LEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLL 365

Query: 239 PSVTNT----SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
            +  ++       N  S       ++ + +  +  M+ +     M  EA  L  +M V  
Sbjct: 366 TACAHSGLVEEGRNYFSYMIRVYGIEPR-MEHFGCMVDLLGRAGMVPEARKLIDEMPV-- 422

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV-DMYAKCGSLTEA 353
             P+   + ++L AC     + LG +I R V   +L+PN      L+ ++YA  G   +A
Sbjct: 423 -SPDVTVLGTLLGACKKHRNIELGEEIGRRV--IELEPNNSGRYVLLANLYANAGKWEDA 479

Query: 354 RTV 356
             V
Sbjct: 480 AKV 482


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 169/534 (31%), Positives = 288/534 (53%), Gaps = 39/534 (7%)

Query: 54  IIINQHLHSNPSIGLKLMRTY-GACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYY 112
           +I   +L S+  +G  L+  +    G +V    VF+++  +N V + ++I   +      
Sbjct: 194 VIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAG 253

Query: 113 DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV 172
           +A+ ++ +M   G++PD +T   V+ AC+    LL+G Q+H   ++ GL  +   G  L+
Sbjct: 254 EAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLI 313

Query: 173 AMYGKC---GCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE-ALDVCREMESLRIK 228
            MY KC   G +  AR++ + +   +V +W +M+ GY Q G +DE ALD+ R M    + 
Sbjct: 314 NMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVI 373

Query: 229 PDADTMASLLPSVTNTSP----ENVLS-----------------------------VKEM 255
           P+  T +S L +  N +     E V +                              ++ 
Sbjct: 374 PNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKA 433

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F  L  KNL+S+N +I  YA N    EA++L+ ++E  G+  +A + AS+L     +  +
Sbjct: 434 FDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTI 493

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             G +IH  V +  L+ N  + NAL+ MY++CG++  A  VF+ M  ++V+SWTS+I+ +
Sbjct: 494 GKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGF 553

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
              G    A+ LF KML  G+ P+ + +++VLSACSH GL+ EG  +FK M  ++ ++PR
Sbjct: 554 AKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPR 613

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
           +EH+AC+VD+LGR+G + EA   I  MP + +  +W + + AC ++ N+++G  AA  I 
Sbjct: 614 MEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMII 673

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
              P+    Y+LLSN+YA   +W +V  +RK M  K + K  G S VE+ ++V 
Sbjct: 674 EQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVH 727



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 189/393 (48%), Gaps = 47/393 (11%)

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
           +NN   + A+   ++M   G  PD  TY   LK C  + S  +G  +H  + +  L  + 
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDM-PSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
              N L+++Y KCG  ++A  +   M  S+D+++W++MV+ +A N     AL    +M  
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 225 LRIKPD-----ADTMA-----------SLLPSVTNT-------------------SPENV 249
               P+     A T A           S+   V  T                      ++
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
           +S  ++F K+  +N V+W +MI          EA+DL+L M   G EP+  +++ V+ AC
Sbjct: 222 VSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISAC 281

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC---GSLTEARTVFDQMRCQDVV 366
            ++  LLLG+++H    R  L  +  +   L++MYAKC   GS+  AR +FDQ+   +V 
Sbjct: 282 ANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVF 341

Query: 367 SWTSMISAYGMSGQGYD--AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
           SWT+MI+ Y   G GYD  A+ LF  M+++ + P+   F S L AC++   L  G    +
Sbjct: 342 SWTAMITGYVQKG-GYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGE---Q 397

Query: 425 IMTEQYKL-VPRIEHFA-CLVDLLGRAGKVEEA 455
           + T   KL    +   A  L+ +  R+G++++A
Sbjct: 398 VFTHAVKLGFSSVNCVANSLISMYARSGRIDDA 430



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 115/488 (23%), Positives = 227/488 (46%), Gaps = 56/488 (11%)

Query: 70  LMRTYGACGQMVDTRHVFDEI-TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
           L+  Y  CGQ      +F  + ++++++ ++ ++  + NN + + AL  + +M  +G+ P
Sbjct: 107 LISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYP 166

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKC-GCLKEARR 186
           + Y +    +ACS +  + VG  I   V+K G L  ++  G GL+ M+ K  G L  A +
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFK 226

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN--- 243
           V   MP ++ VTW  M+    Q G   EA+D+  +M     +PD  T++ ++ +  N   
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMEL 286

Query: 244 ---------------------------------TSPENVLSVKEMFLKLDNKNLVSWNVM 270
                                            +   ++ + +++F ++ + N+ SW  M
Sbjct: 287 LLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAM 346

Query: 271 IAVYAN-NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           I  Y        EA+DL+  M +  + PN  + +S L AC +L+AL +G ++  +  +  
Sbjct: 347 ITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLG 406

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
                 + N+L+ MYA+ G + +AR  FD +  ++++S+ ++I AY  +    +A+ LF+
Sbjct: 407 FSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFN 466

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC--LVDLLG 447
           ++   G+   +  F S+LS  +  G + +G    +I     K   ++    C  L+ +  
Sbjct: 467 EIEDQGMGASAFTFASLLSGAASIGTIGKGE---QIHARVIKSGLKLNQSVCNALISMYS 523

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH------LAPNQ 501
           R G +E A+ + + M  + N   W S++     ++       A + +FH      + PN+
Sbjct: 524 RCGNIESAFQVFEDME-DRNVISWTSIITG---FAKHGFATQALE-LFHKMLEEGVRPNE 578

Query: 502 SGYYVLLS 509
             Y  +LS
Sbjct: 579 VTYIAVLS 586


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 184/605 (30%), Positives = 296/605 (48%), Gaps = 69/605 (11%)

Query: 14  TKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRT 73
           T  V AL+L T          N +L  Y     L   HA+ + +     N   G  L+  
Sbjct: 29  TAAVHALILRTLPHPSPTYLLNTLLTAYASSGLLP--HARRVFDAMPGRNLVTGNSLLSA 86

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM--SVHGFDPDCY 131
               G + D   +F  +  ++ V +N L+  +     +  A   Y  +     G  P   
Sbjct: 87  LARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRI 146

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
           T   V+   S      +G Q+HC ++++G     F G+ LV MY K G + +ARRV ++M
Sbjct: 147 TMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEM 206

Query: 192 PSKDVV-------------------------------TWNSMVAGYAQNGRFDEALDVCR 220
             K+VV                               TW +MV G  QNG   EALDV R
Sbjct: 207 EGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFR 266

Query: 221 EMESLRIKPDADTMASLLPS----------------VTNTSPENVLSV------------ 252
            M +  +  D  T  S+L +                +T T  E+ + V            
Sbjct: 267 RMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCR 326

Query: 253 -----KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                + +F ++  KN++SW  MI  Y  N    EAV ++ +M+  GI+P+  ++ SV+ 
Sbjct: 327 SVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVIS 386

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           +C +L++L  G + H       L+P + + NALV +Y KCGS+ +A  +FD+M   D VS
Sbjct: 387 SCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS 446

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           WT+++  Y   G+  + + LF KML  G+ PD + F+ VLSACS +GL+++GR YF  M 
Sbjct: 447 WTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQ 506

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
           + + +VP  +H+ C++DL  R+G +++A + IKQMP  P+   W +L++AC L  +M+IG
Sbjct: 507 QDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIG 566

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
             AA+++  L P     YVLL +++A  G W DV ++R+ M  + +KK PG S ++  ++
Sbjct: 567 KWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNK 626

Query: 547 VQIIA 551
           V I +
Sbjct: 627 VHIFS 631


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 167/470 (35%), Positives = 259/470 (55%), Gaps = 35/470 (7%)

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
           LH   ++      P    Y   + AC+ S +L    +IH  +     + + F  N L+ +
Sbjct: 36  LHDLDHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHL 95

Query: 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
           Y KCG + EA +V + M  KD+V+W S++AGYAQN    EA+ +   M   R KP+  T 
Sbjct: 96  YCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTF 155

Query: 235 ASLLPSVTNTSPENV------LSVK---------------------------EMFLKLDN 261
           ASLL +    +   +      L+VK                            +F KLD+
Sbjct: 156 ASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDS 215

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           KN VSWN +I+ +A       A+ ++ +M+ +G E    + +S+      + AL  G+ +
Sbjct: 216 KNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWV 275

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
           H ++ + + +    + N ++DMYAK GS+ +AR VF+++  +D+V+W SM++A+   G G
Sbjct: 276 HAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLG 335

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
            +AV+ F +M  SG+  + I F+ +L+ACSH GL++EG++YF  M ++Y L P IEH+  
Sbjct: 336 KEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVT 394

Query: 442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501
           +VDLLGRAG +  A   I +MPMEP   +WG+L+AAC ++ N  +G  AADH+F L P+ 
Sbjct: 395 VVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDD 454

Query: 502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           SG  VLL NIYA  G W    RVRK M + G+KK P  S VE+ + V + 
Sbjct: 455 SGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMF 504



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 166/361 (45%), Gaps = 35/361 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +K+H  +  ++    +  +   L+  Y  CG +V+   VFD++  K++V +  LI  Y  
Sbjct: 71  RKIHGHLASSR-FEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQ 129

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N +  +A+ +   M    F P+ +T+  +LKA        +G QIH   VK     +++ 
Sbjct: 130 NDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYV 189

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           G+ L+ MY +CG +  A  V + + SK+ V+WN++++G+A+ G  + AL V  EM+    
Sbjct: 190 GSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGF 249

Query: 228 KPDADTMASLLPS---------------------------VTNT------SPENVLSVKE 254
           +    T +S+                              V NT         +++  ++
Sbjct: 250 EATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARK 309

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F ++ NK+LV+WN M+  +A   +  EAV  + +M   GI  N I+   +L AC     
Sbjct: 310 VFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGL 369

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTSMIS 373
           +  G+     ++   L+P +     +VD+  + G L  A     +M  +   + W ++++
Sbjct: 370 VKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLA 429

Query: 374 A 374
           A
Sbjct: 430 A 430



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 100/203 (49%), Gaps = 1/203 (0%)

Query: 41  YPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           Y D     ++HA + +    H +  +G  L+  Y  CG+M     VFD++ +KN V +N 
Sbjct: 165 YADSGIGGQIHA-LAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNA 223

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
           LI  +        AL V+  M  +GF+   +TY  +    +G  +L  G  +H  +VK  
Sbjct: 224 LISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSR 283

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
                F GN ++ MY K G + +AR+V   + +KD+VTWNSM+  +AQ G   EA+    
Sbjct: 284 QKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFE 343

Query: 221 EMESLRIKPDADTMASLLPSVTN 243
           EM    I  +  T   +L + ++
Sbjct: 344 EMRKSGIYLNQITFLCILTACSH 366


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 161/466 (34%), Positives = 258/466 (55%), Gaps = 34/466 (7%)

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM 174
           L     M++ G     + Y   + AC    +L  G Q+H  ++       +F G  LV M
Sbjct: 27  LRAASGMALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTM 86

Query: 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
           Y +CG L +AR VL+ MP + VV+W +M++GY+Q  R  EALD+  +M      P+  T+
Sbjct: 87  YVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTL 146

Query: 235 ASLLPSVTN---------------------------------TSPENVLSVKEMFLKLDN 261
           A++L S +                                     EN+   + +F  L  
Sbjct: 147 ATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPE 206

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           +++VS   +I+ YA   +  EA+DL+ Q+   G++ N ++  +++ A   L++L  G+++
Sbjct: 207 RDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQV 266

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
           H  + RK+L   + L+N+L+DMY+KCG L  +R VFD M  + VVSW +M+  YG  G G
Sbjct: 267 HALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLG 326

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
           ++ ++LF K L   + PDS+  ++VLS CSH GL++EG   F  + ++   +    H+ C
Sbjct: 327 HEVISLF-KDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGC 385

Query: 442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501
           ++DLLGR+G++E+A +LI+ MP E    IWGSL+ AC +++N+ +G L A  +  + P  
Sbjct: 386 IIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPEN 445

Query: 502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQV 547
           +G YV+LSNIYA AG W DV +VRK M  K + K PG S  + D+V
Sbjct: 446 AGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKV 491



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 180/364 (49%), Gaps = 41/364 (11%)

Query: 48  KKLHAQIIINQHLHSNPSI--GLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           +++HA++I  ++    P++  G +L+  Y  CG + D R+V D +  ++VV +  +I  Y
Sbjct: 62  RQVHARMITARY---RPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGY 118

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
                + +AL ++  M   G  P+ YT   VL +CSG  S+  G Q+H  +VK   + ++
Sbjct: 119 SQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHM 178

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           F G+ L+ MY K   ++EARRV + +P +DVV+  ++++GYAQ G  +EALD+ R++ S 
Sbjct: 179 FVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSE 238

Query: 226 RIKPDADTMASLLPSVTNTSPEN---------------------------------VLSV 252
            ++ +  T  +L+ +++  +  +                                 +L  
Sbjct: 239 GMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYS 298

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           + +F  +  +++VSWN M+  Y  + +  E + L+  +    ++P+++++ +VL  C   
Sbjct: 299 RRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHG 357

Query: 313 SALLLGRKIH-RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTS 370
             +  G  I    V+ +    +      ++D+  + G L +A  + + M  +   S W S
Sbjct: 358 GLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGS 417

Query: 371 MISA 374
           ++ A
Sbjct: 418 LLGA 421


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 164/516 (31%), Positives = 279/516 (54%), Gaps = 41/516 (7%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD-TRHVFDEITNKNV 95
           +LD     K ++++HA++ ++  L  +  +G  +     +  + +D    + D      +
Sbjct: 12  LLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTL 71

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD--PDCYTYPCVLKACSGSNSLLVGLQIH 153
              N +IR++  + +   +   Y+ +   G D  PD YT   +++AC+G      GLQ+H
Sbjct: 72  FALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVH 131

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
              ++ G D +     GL+++Y + GCL    +V N +P  D V   +MV   A+ G   
Sbjct: 132 GMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCG--- 188

Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273
                                             +V+  +++F  +  ++ ++WN MI+ 
Sbjct: 189 ----------------------------------DVVFARKLFEGMPERDPIAWNAMISG 214

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           YA      EA++++  M++ G++ N +++ SVL AC  L AL  GR  H Y+ER K++  
Sbjct: 215 YAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKIT 274

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
           +RL   LVD+YAKCG + +A  VF  M  ++V +W+S ++   M+G G   + LFS M  
Sbjct: 275 VRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQ 334

Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
            G+ P+++ FVSVL  CS  G ++EG+ +F  M  ++ + P++EH+ CLVDL  RAG++E
Sbjct: 335 DGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLE 394

Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
           +A  +I+QMPM+P+  +W SL+ A  +Y N+++G+LA+  +  L     G YVLLSNIYA
Sbjct: 395 DAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYA 454

Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGASV-EMNDQVQ 548
            +  W +V  VR+ M SKG++K PG SV E+N +V 
Sbjct: 455 DSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVH 490


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 158/390 (40%), Positives = 233/390 (59%), Gaps = 36/390 (9%)

Query: 195 DVVTWNSMVAGYAQNGRFDEALDVCREME-SLRIKPDADTMASLLPSVTNTSP------- 246
           +V  WN+++ GYA+ G    A  + REM  S  ++PD  T   L+ +VT  +        
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143

Query: 247 --------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                                      +V S  ++F K+  K+LV+WN +I  +A N  P
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            EA+ LY +M   GI+P+  ++ S+L AC  + AL LG+++H Y+ +  L  NL   N L
Sbjct: 204 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVL 263

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS-GLCPD 399
           +D+YA+CG + EA+T+FD+M  ++ VSWTS+I    ++G G +A+ LF  M  + GL P 
Sbjct: 264 LDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPC 323

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
            I FV +L ACSH G+++EG  YF+ M E+YK+ PRIEHF C+VDLL RAG+V++AY+ I
Sbjct: 324 EITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYI 383

Query: 460 KQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519
           K MPM+PN  IW +L+ AC ++ + D+   A   I  L PN SG YVLLSN+YA   RW 
Sbjct: 384 KSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWS 443

Query: 520 DVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           DV+++RK M   G+KK+PG S VE+ ++V 
Sbjct: 444 DVQKIRKQMLRDGVKKVPGHSLVEVGNRVH 473



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 192/411 (46%), Gaps = 45/411 (10%)

Query: 32  DACNDILDKY--PDIKTLKKLHAQIIINQHLHSNPSIGLKL---MRTYGACGQMVDTRHV 86
           + C ++L  Y    I  L+++HA  I +    S+  +G  L   + +  +   M     V
Sbjct: 16  EKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKV 75

Query: 87  FDEITNK-NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF-DPDCYTYPCVLKACSGSN 144
           F +I    NV  +N LIR Y        A  +Y+ M V G  +PD +TYP ++KA +   
Sbjct: 76  FSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMA 135

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
            + +G  IH  V++ G    ++  N L+ +Y  CG +  A +V + MP KD+V WNS++ 
Sbjct: 136 DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVIN 195

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS----------------------VT 242
           G+A+NG+ +EAL +  EM S  IKPD  T+ SLL +                        
Sbjct: 196 GFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTR 255

Query: 243 NTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
           N    NVL             K +F ++ +KN VSW  +I   A N    EA++L+  ME
Sbjct: 256 NLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYME 315

Query: 292 -VHGIEPNAISVASVLPACGDLSALLLGRK-IHRYVERKKLQPNLRLENALVDMYAKCGS 349
              G+ P  I+   +L AC     +  G +   R  E  K++P +     +VD+ A+ G 
Sbjct: 316 STEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQ 375

Query: 350 LTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           + +A      M  Q +VV W +++ A  + G     +A F+++ +  L P+
Sbjct: 376 VKKAYEYIKSMPMQPNVVIWRTLLGACTVHGD--SDLAEFARIQILQLEPN 424



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 126/239 (52%), Gaps = 4/239 (1%)

Query: 241 VTNTSPENVLSVKEMFLKLDNK-NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPN 298
           V+  SP  +    ++F K++   N+  WN +I  YA       A  LY +M V G +EP+
Sbjct: 61  VSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPD 120

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
             +   ++ A   ++ + LG  IH  V R      + ++N+L+ +YA CG +  A  VFD
Sbjct: 121 THTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFD 180

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
           +M  +D+V+W S+I+ +  +G+  +A+AL+++M   G+ PD    VS+LSAC+  G L  
Sbjct: 181 KMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTL 240

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           G+     M  +  L   +     L+DL  R G+VEEA  L  +M ++ N   W SL+  
Sbjct: 241 GKRVHVYMI-KVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVG 297



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 161/328 (49%), Gaps = 21/328 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++  + +H+ ++I     S   +   L+  Y  CG +     VFD++  K++V +N +I
Sbjct: 136 DVRLGETIHS-VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVI 194

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             +  N    +AL +Y  M+  G  PD +T   +L AC+   +L +G ++H  ++KVGL 
Sbjct: 195 NGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLT 254

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            NL + N L+ +Y +CG ++EA+ + ++M  K+ V+W S++ G A NG   EA+++ + M
Sbjct: 255 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYM 314

Query: 223 ESLR-IKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLVSWNVMIAVYAN 276
           ES   + P   T   +L + ++     V    E F ++  +      +  +  M+ + A 
Sbjct: 315 ESTEGLLPCEITFVGILYACSHCG--MVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLAR 372

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC---GDLSALLLGRKIHRYVERKKLQPN 333
                +A +    M    ++PN +   ++L AC   GD       R     ++  +L+PN
Sbjct: 373 AGQVKKAYEYIKSMP---MQPNVVIWRTLLGACTVHGDSDLAEFAR-----IQILQLEPN 424

Query: 334 LRLENALV-DMYAKCGSLTEARTVFDQM 360
              +  L+ +MYA     ++ + +  QM
Sbjct: 425 HSGDYVLLSNMYASEQRWSDVQKIRKQM 452


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 164/488 (33%), Positives = 284/488 (58%), Gaps = 24/488 (4%)

Query: 74  YGACGQMVDTRHVFDEI-TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYT 132
           Y  CG + + R +FD +   KNVV +  ++  Y+ +    DA  ++  M     + +  +
Sbjct: 108 YIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMP----NKNVVS 163

Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
           +  ++   + +  +   + +   +     + N+ + N +++M  +CG ++EARR+ + MP
Sbjct: 164 WNTMIDGYAQNGRIDSAMYLFEKMP----ERNVVSWNTVMSMLAQCGRIEEARRLFDRMP 219

Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSV 252
            +DV++W +M+AG       DEALD+   M   R  P  +TM + L  + N    ++   
Sbjct: 220 ERDVISWTAMIAGL-----LDEALDLFERMPE-RDLPSWNTMITGL--IQNG---DLRRA 268

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGD 311
           +++F ++  KN++SW  MI          EA+ ++ +M   +G +PN  +  SVL AC +
Sbjct: 269 RKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSN 328

Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ-MRCQ-DVVSWT 369
           L+ L  G+++H+ + +   Q +  + +AL++MY+KCG L  AR +FD  M  Q D+VSW 
Sbjct: 329 LAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWN 388

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
            +I+AY   G G +A+  F +M  SG  PD + +V +LSACSHAGL+EEG  YF  + + 
Sbjct: 389 GIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKD 448

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
             ++ R +H+ACLVDL GRAG+++EA+  I+++  +P+ R+WG+L+A C +++N+ IG  
Sbjct: 449 RSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQ 508

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           AA  +  + P  +G Y+LLSNIYA  G+W +  RVR  M  KG+KK PG S +E+ ++V 
Sbjct: 509 AAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVH 568

Query: 549 IIALPLRS 556
           +  +  +S
Sbjct: 569 VFVVGDKS 576



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 169/345 (48%), Gaps = 42/345 (12%)

Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
           +D N+   N ++    K G + EARR+ ++M   DV+TW ++++GY + G  +EA    R
Sbjct: 63  VDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEAR---R 119

Query: 221 EMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
             + +  K +  T  +++     ++   +   +++F ++ NKN+VSWN MI  YA N   
Sbjct: 120 LFDRVDAKKNVVTWTAMVGGYIRSN--KISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRI 177

Query: 281 AEAVDLYLQMEVHGIEPNAIS---VASVLPACGDLSALLLGRKIHRYVERKKL------- 330
             A+ L+ +M     E N +S   V S+L  CG +      R   R  ER  +       
Sbjct: 178 DSAMYLFEKMP----ERNVVSWNTVMSMLAQCGRIEEAR--RLFDRMPERDVISWTAMIA 231

Query: 331 --------------QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
                         + +L   N ++    + G L  AR +F++M  ++V+SWT+MI+   
Sbjct: 232 GLLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCV 291

Query: 377 MSGQGYDAVALFSKML-MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
             G+  +A+ +FS+ML  +G  P+   FVSVL ACS+   L EG+   +I++   K V +
Sbjct: 292 QEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIIS---KTVYQ 348

Query: 436 IEHF--ACLVDLLGRAGKVEEAYDLIKQ-MPMEPNERIWGSLVAA 477
              F  + L+++  + G++  A  +    M  + +   W  ++AA
Sbjct: 349 DSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAA 393



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 152/355 (42%), Gaps = 69/355 (19%)

Query: 2   KAVVLLCRHFST--TKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQH 59
           +A+ +  R  ST   KP Q   +S         AC+++      +   +++H QII    
Sbjct: 298 EALKIFSRMLSTNGAKPNQGTFVSVL------GACSNL----AGLGEGQQVH-QIISKTV 346

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDE--ITNKNVVFFNVLIRSYVNNYLYYDALHV 117
              +  +   L+  Y  CG++   R +FD+   + +++V +N +I +Y ++    +A++ 
Sbjct: 347 YQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINF 406

Query: 118 YKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG----LVA 173
           +K M   GF PD  TY  +L ACS +  +  GL+    +VK   D ++         LV 
Sbjct: 407 FKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVK---DRSILVREDHYACLVD 463

Query: 174 MYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
           + G+ G LKEA   +  + +K     W +++AG             C    +++I   A 
Sbjct: 464 LCGRAGRLKEAFGFIERLETKPSARVWGALLAG-------------CNVHANVKIGKQA- 509

Query: 233 TMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
                   +    PEN  +    +L L N           +YA+     EA  + L+M+ 
Sbjct: 510 -----AKKLLEVEPENAGT----YLLLSN-----------IYASTGKWREAARVRLKMKD 549

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV-DMYAK 346
            G++          P C   S + +G ++H +V   K     +L  +L+ D+++K
Sbjct: 550 KGLKKQ--------PGC---SWIEVGNRVHVFVVGDKSHSQSKLIYSLLRDLHSK 593


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 167/539 (30%), Positives = 289/539 (53%), Gaps = 69/539 (12%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           G +   R VFDEI   +V  +N +I+ Y         + +YK M VH   PD +T+P +L
Sbjct: 83  GDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142

Query: 138 KACSGSNSLLVG-LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDV 196
           K  +   +L  G + ++ +V+   LD NLF   G + ++  CG +  AR++ +     +V
Sbjct: 143 KGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEV 202

Query: 197 VTWNSMVAGYAQNGRFDEALDVCREMESL--RIKPDADTMASLLPSVT------------ 242
           VTWN +++GY +  R++E+  +  EME     + P++ T+  +L + +            
Sbjct: 203 VTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIY 262

Query: 243 -----------NTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYAN---- 276
                      N   EN L           + + +F ++  ++++SW  ++  +AN    
Sbjct: 263 NKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRI 322

Query: 277 -------NSMPA--------------------EAVDLYLQMEVHGIEPNAISVASVLPAC 309
                  + MP                     E + L+  M++  ++P+  ++ S+L AC
Sbjct: 323 DLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTAC 382

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             L AL LG     Y+++ K++ +  + NAL+DMY KCG++ +A+ +F++M+ +D  +WT
Sbjct: 383 AHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWT 442

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           +MI     +G G +A+ +FS ML + + PD I ++ V+ AC+H GL+ +G+++F  M  Q
Sbjct: 443 AMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQ 502

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           + + P + H+ C+VDLLGRAG ++EA ++I  MP++PN  +WGSL+ AC ++ N+ +  +
Sbjct: 503 HGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEM 562

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV-EMNDQV 547
           AA+ I  L P     YVLL NIYA   +W ++  VRK M  +GIKK+PG S+ EMN  V
Sbjct: 563 AANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIV 621


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  304 bits (778), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 169/513 (32%), Positives = 273/513 (53%), Gaps = 66/513 (12%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +L +   I  +  +HAQ+I N H   +P +  +L+R+   C  +     +F    N NV 
Sbjct: 38  LLQRSKHINQVLPIHAQLIRNGH-SQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVY 96

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +  LI  +V++  Y+DA+ +Y  M      PD Y    +LKAC    +L  G ++H   
Sbjct: 97  LYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRA 156

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           +K+GL  N      ++ +YGKCG L +ARRV                        F+E  
Sbjct: 157 LKLGLSSNRLVRLRIMELYGKCGELGDARRV------------------------FEEM- 191

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                        PE+V++          K+ V W  MI  +  
Sbjct: 192 -----------------------------PEDVVA----------KDTVCWTAMIDGFVR 212

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N     A++ +  M+   + PN  ++  VL AC  L AL +GR +H Y+ + +++ NL +
Sbjct: 213 NEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFV 272

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            NAL++MY++CGS+ EA+TVFD+M+ +DV+++ +MIS   M+G+   A+ LF  M+   L
Sbjct: 273 GNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRL 332

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            P ++ FV VL+ACSH GL++ G   F  MT  Y + P+IEH+ C+VDLLGR G++EEAY
Sbjct: 333 RPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAY 392

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           DLI+ M M P+  + G+L++AC ++ N+++G   A  +       SG YVLLS++YA +G
Sbjct: 393 DLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSG 452

Query: 517 RWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           +W +  +VR  M   G++K PG +S+E+N+++ 
Sbjct: 453 KWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIH 485


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 177/543 (32%), Positives = 282/543 (51%), Gaps = 78/543 (14%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFD--------------- 88
           ++T KK+H+  I+   L  N S+   L+  Y  CG  +  + VFD               
Sbjct: 162 LETGKKVHS-FIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIA 220

Query: 89  ----------------EITNKNVVFFNVLIRSYVNNYLYYD--ALHVYKNMSVHG-FDPD 129
                           ++  +++V +N +I  Y  N   YD  AL ++  M       PD
Sbjct: 221 LHMQVGQMDLAMAQFEQMAERDIVTWNSMISGY--NQRGYDLRALDMFSKMLRDSMLSPD 278

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +T   VL AC+    L +G QIH  +V  G D +    N L++MY +CG ++ ARR++ 
Sbjct: 279 RFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIE 338

Query: 190 DMPSKD--VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE 247
              +KD  +  + +++ GY + G  +EA                                
Sbjct: 339 QRGTKDLKIEGFTALLDGYIKLGDMNEA-------------------------------- 366

Query: 248 NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                K +F  L ++++V+W  MI  Y  + +  EA++L+  M      PN+ ++A++L 
Sbjct: 367 -----KNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLS 421

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVV 366
               L++L  G++IH    +     ++ + NAL+ MYAK GS+T A   FD +RC+ D V
Sbjct: 422 VASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTV 481

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           SWTSMI A    G   +A+ LF  MLM GL PD I +V V SAC+HAGL+ +GR YF +M
Sbjct: 482 SWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMM 541

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
            +  K++P + H+AC+VDL GRAG ++EA + I++MP+EP+   WGSL++AC +Y N+D+
Sbjct: 542 KDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDL 601

Query: 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMND 545
           G +AA+ +  L P  SG Y  L+N+Y+  G+W +  ++RK M    +KK  G S +E+  
Sbjct: 602 GKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKH 661

Query: 546 QVQ 548
           +V 
Sbjct: 662 KVH 664



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/511 (23%), Positives = 218/511 (42%), Gaps = 90/511 (17%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N++++ Y   KT   LHA+ + ++           ++  Y   G M  +   FD +  ++
Sbjct: 53  NNLMNVYS--KTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRD 110

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
            V +  +I  Y N   Y+ A+ +   M   G +P  +T   VL + + +  L  G ++H 
Sbjct: 111 SVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHS 170

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            +VK+GL  N+   N L+ MY KCG    A+ V + M  KD+ +WN+M+A + Q G+ D 
Sbjct: 171 FIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDL 230

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
           A+                                       F ++  +++V+WN MI+ Y
Sbjct: 231 AM-------------------------------------AQFEQMAERDIVTWNSMISGY 253

Query: 275 ANNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
                   A+D++ +M     + P+  ++ASVL AC +L  L +G +IH ++       +
Sbjct: 254 NQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDIS 313

Query: 334 LRLENALVDMYAKCGS---------------------------------LTEARTVFDQM 360
             + NAL+ MY++CG                                  + EA+ +FD +
Sbjct: 314 GIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSL 373

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           + +DVV+WT+MI  Y   G   +A+ LF  M+     P+S    ++LS  S    L  G+
Sbjct: 374 KDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGK 433

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV---EEAYDLIKQMPMEPNERIWGSLVAA 477
                  +  ++   +     L+ +  +AG +     A+DLI+    E +   W S++ A
Sbjct: 434 QIHGSAVKSGEIYS-VSVSNALITMYAKAGSITSASRAFDLIR---CERDTVSWTSMIIA 489

Query: 478 CC----------LYSNMDIGILAADHIFHLA 498
                       L+  M +  L  DHI ++ 
Sbjct: 490 LAQHGHAEEALELFETMLMEGLRPDHITYVG 520



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 163/357 (45%), Gaps = 72/357 (20%)

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
           K+ + SN       +HC V+K GL ++++  N L+ +Y K G    AR++ ++MP +   
Sbjct: 22  KSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAF 81

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
           +WN++++ YA+ G  D +   C                                  E F 
Sbjct: 82  SWNTVLSAYAKRGDMDSS---C----------------------------------EFFD 104

Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL 317
           +L  ++ VSW  MI  Y N     +A+ +  +M   GIEP+  ++ +VL +      L  
Sbjct: 105 RLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLET 164

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD------------------- 358
           G+K+H ++ +  L+ N+ + N+L++MYAKCG    A+ VFD                   
Sbjct: 165 GKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQ 224

Query: 359 ------------QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM-SGLCPDSIAFVS 405
                       QM  +D+V+W SMIS Y   G    A+ +FSKML  S L PD     S
Sbjct: 225 VGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLAS 284

Query: 406 VLSACSHAGLLEEG-RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
           VLSAC++   L  G + +  I+T  + +   +     L+ +  R G VE A  LI+Q
Sbjct: 285 VLSACANLEKLCIGEQIHSHIVTTGFDISGIV--LNALISMYSRCGGVETARRLIEQ 339


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 162/456 (35%), Positives = 257/456 (56%), Gaps = 35/456 (7%)

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D   Y  +LK C+    L+ G  +H  +++    +++  GN L+ MY KCG L+EAR+V 
Sbjct: 59  DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV------- 241
             MP +D VTW ++++GY+Q+ R  +AL    +M      P+  T++S++ +        
Sbjct: 119 EKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGC 178

Query: 242 ---------------TNTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYA 275
                          +N    + L             + +F  L+++N VSWN +IA +A
Sbjct: 179 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHA 238

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
             S   +A++L+  M   G  P+  S AS+  AC     L  G+ +H Y+ +   +    
Sbjct: 239 RRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAF 298

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
             N L+DMYAK GS+ +AR +FD++  +DVVSW S+++AY   G G +AV  F +M   G
Sbjct: 299 AGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVG 358

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + P+ I+F+SVL+ACSH+GLL+EG +Y+++M +   +VP   H+  +VDLLGRAG +  A
Sbjct: 359 IRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRA 417

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
              I++MP+EP   IW +L+ AC ++ N ++G  AA+H+F L P+  G +V+L NIYA  
Sbjct: 418 LRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASG 477

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           GRW D  RVRK M   G+KK P  S VE+ + + + 
Sbjct: 478 GRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMF 513



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 187/406 (46%), Gaps = 45/406 (11%)

Query: 16  PVQALVLSTQYTLLSGDAC-------NDILDKYPDIKTL---KKLHAQIIINQHLHSNPS 65
           P   L+L T    L G          N +L K    K L   + +HA I+ +   H +  
Sbjct: 38  PSNDLLLRTSSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRH-DIV 96

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y  CG + + R VF+++  ++ V +  LI  Y  +    DAL  +  M   G
Sbjct: 97  MGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFG 156

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           + P+ +T   V+KA +       G Q+H   VK G D N+  G+ L+ +Y + G + +A+
Sbjct: 157 YSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQ 216

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT- 244
            V + + S++ V+WN+++AG+A+    ++AL++ + M     +P   + ASL  + ++T 
Sbjct: 217 LVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTG 276

Query: 245 --------------SPENVLS------------------VKEMFLKLDNKNLVSWNVMIA 272
                         S E +++                   +++F +L  +++VSWN ++ 
Sbjct: 277 FLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLT 336

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            YA +    EAV  + +M   GI PN IS  SVL AC     L  G   +  +++  + P
Sbjct: 337 AYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVP 396

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTSMISAYGM 377
                  +VD+  + G L  A    ++M  +   + W ++++A  M
Sbjct: 397 EAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRM 442



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 120/484 (24%), Positives = 208/484 (42%), Gaps = 76/484 (15%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           SN  +G  L+  Y   G M D + VFD + ++N V +N LI  +        AL +++ M
Sbjct: 194 SNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGM 253

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              GF P  ++Y  +  ACS +  L  G  +H  ++K G     F GN L+ MY K G +
Sbjct: 254 LRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSI 313

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
            +AR++ + +  +DVV+WNS++  YAQ+G   EA+    EM  + I+P+  +  S+L + 
Sbjct: 314 HDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTAC 373

Query: 242 TNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA-- 299
           +++                                  +  E    Y  M+  GI P A  
Sbjct: 374 SHS---------------------------------GLLDEGWHYYELMKKDGIVPEAWH 400

Query: 300 -ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE-----A 353
            ++V  +L   GDL+  L      R++E   ++P   +  AL++   +    TE     A
Sbjct: 401 YVTVVDLLGRAGDLNRAL------RFIEEMPIEPTAAIWKALLNA-CRMHKNTELGAYAA 453

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-SIAFVSVLSAC-- 410
             VF ++   D      + + Y   G+  DA  +  KM  SG+  + + ++V + +A   
Sbjct: 454 EHVF-ELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHM 512

Query: 411 ------SHAGLLEEGRYYFKIMTEQYKL--VPRIEHFACLVDLLGR-------AGKVEEA 455
                  H    E  R + +++ +  +L  VP   H    VD   R       + K+  A
Sbjct: 513 FVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALA 572

Query: 456 YDLIKQMP-----MEPNERIWGSLVAACCLYSNMDIG---ILAADHIFHLAPNQSGYYVL 507
           + L+   P     ++ N R+ G    A  L S + +G   I+   + FH   + S  Y++
Sbjct: 573 FALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKV-VGREIIVRDTNRFHHFKDASILYLV 631

Query: 508 LSNI 511
           +  I
Sbjct: 632 VRGI 635


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 181/530 (34%), Positives = 275/530 (51%), Gaps = 52/530 (9%)

Query: 29  LSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFD 88
           L+ D    +L          ++HA  +    +  + ++  +L R Y A G++     +  
Sbjct: 22  LTADRAAALLAGCASASRAAEIHAAAV-RASVDQDKAVAFRLQRAYAASGRLDLAVALLR 80

Query: 89  EITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM--SVHGFDPDCYTYPCVLKACSGSNSL 146
              +   VF+   I ++ +  L+  AL +   M  S HG  P  +T    L AC     L
Sbjct: 81  RTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPAC---GCL 137

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM-PSKDVVTWNSMVAG 205
            VG  +H   VK+ L    +    L+ MY + G    AR + + M P   VV+  +M++ 
Sbjct: 138 AVGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSC 197

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           YA+ G+ D+A                                     + +F  L  K+LV
Sbjct: 198 YAKMGQLDDA-------------------------------------RGLFDALPRKDLV 220

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
            WN M+  Y  +  P+EA+ L+ QM   G+EP+ +SV   L A   L     GR +H +V
Sbjct: 221 CWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFV 280

Query: 326 ----ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMS 378
                R +++ N R+  ALVDMY KCGSL EA  VF  +     +DVV+W +MI+ Y M 
Sbjct: 281 ANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMH 340

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
           G+  +A+  F ++   GL P  I F+ VL+ACSH+GL++EGR  F  M E+Y +VP++EH
Sbjct: 341 GRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEH 400

Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498
           + C+VDLLGRAG+VEEA+DL++ M  +P+  +W SL+ AC L+ N+ +G   AD++    
Sbjct: 401 YGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNG 460

Query: 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
              SG YVLLSN+YA AG+W +V RVR  M + G++K PG S VE+  +V
Sbjct: 461 LANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRV 510


>gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 158/489 (32%), Positives = 266/489 (54%), Gaps = 41/489 (8%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF-DPDCYTYPCVLKACSGSN 144
           VF+ +       +N LI+ Y N +L+++ + +   M   GF  PD YT+P V+K CS + 
Sbjct: 62  VFERVPYPGTYLWNHLIKGYSNKFLFFETVSLLMRMMRTGFARPDEYTFPLVMKVCSNNA 121

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
              VG  +H  V+++G D ++  G   V  YGKC  L  AR+V  +MP ++VV+W +++ 
Sbjct: 122 EFRVGSTVHGLVLRIGFDKDVVLGTSFVDFYGKCKDLCSARKVFGEMPERNVVSWTALIV 181

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL 264
            Y ++G  +EA    + M  L  + +  T  +L+  +  +   ++++ +++F ++  +++
Sbjct: 182 AYVKSGELEEA----KRMFDLMPERNLGTWNALVDGLVKSG--DLVNARKLFDEMPKRDI 235

Query: 265 VS-------------------------------WNVMIAVYANNSMPAEAVDLYLQMEVH 293
           +S                               W+ +I  YA N  P EA  ++ +M   
Sbjct: 236 ISYTSMIDGYAKGGDMVSARDLFENARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAK 295

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERK--KLQPNLRLENALVDMYAKCGSLT 351
            ++P+   +  ++ AC  +    L  K+  Y+ +   K   +  +  AL+DM AKCG + 
Sbjct: 296 NVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQSMNKFSSHYVIP-ALIDMNAKCGHMD 354

Query: 352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
            A  +F++M  +D+VS+ SM+    + G G +AV LF KM+  G+ PD +AF  +L  CS
Sbjct: 355 RAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAVRLFEKMVDEGIVPDEVAFTVILKVCS 414

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIW 471
            + L+EEG  YF++M ++Y ++   +H++C+V+LL R GK++EAY+LIK MP E +   W
Sbjct: 415 QSRLVEEGLRYFELMRKEYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAW 474

Query: 472 GSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531
           GSL+  C L+ N +I  + A  +F L P  +G YVLLSNIYA   RW D+  +R  MN  
Sbjct: 475 GSLLGGCSLHGNTEIAEVVARQLFELEPQSAGSYVLLSNIYAALDRWADLAHLRDKMNEN 534

Query: 532 GIKKMPGAS 540
           GIKK+ G S
Sbjct: 535 GIKKICGRS 543



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 155/378 (41%), Gaps = 67/378 (17%)

Query: 151 QIHCSVVKVGL--DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
           QIH  +++ GL  D NL +     +          +  V   +P      WN ++ GY+ 
Sbjct: 28  QIHARIIRKGLEQDQNLISIFISSSSSSL----SYSSSVFERVPYPGTYLWNHLIKGYSN 83

Query: 209 NGRFDEALDVC-REMESLRIKPDADTMASLLPSVTNTSP--------------------- 246
              F E + +  R M +   +PD  T   ++   +N +                      
Sbjct: 84  KFLFFETVSLLMRMMRTGFARPDEYTFPLVMKVCSNNAEFRVGSTVHGLVLRIGFDKDVV 143

Query: 247 ------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
                       +++ S +++F ++  +N+VSW  +I  Y  +    EA  ++  M    
Sbjct: 144 LGTSFVDFYGKCKDLCSARKVFGEMPERNVVSWTALIVAYVKSGELEEAKRMFDLMP--- 200

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
            E N  +  +++        L+  RK+   + ++ +        +++D YAK G +  AR
Sbjct: 201 -ERNLGTWNALVDGLVKSGDLVNARKLFDEMPKRDIISY----TSMIDGYAKGGDMVSAR 255

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            +F+  R  DV +W+++I  Y  +GQ  +A  +FS+M    + PD    V ++SACS  G
Sbjct: 256 DLFENARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMG 315

Query: 415 LLE----EGRYYFKIMTE--QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
             E       Y  + M +   + ++P       L+D+  + G ++ A  L ++MP     
Sbjct: 316 CFELCEKVDSYLHQSMNKFSSHYVIP------ALIDMNAKCGHMDRAAKLFEEMPQR--- 366

Query: 469 RIWGSLVAACCLYSNMDI 486
                LV+ C +   M I
Sbjct: 367 ----DLVSYCSMMEGMAI 380



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 150/353 (42%), Gaps = 50/353 (14%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G   +  YG C  +   R VF E+  +NVV +  LI +YV +    +A  ++  M    
Sbjct: 144 LGTSFVDFYGKCKDLCSARKVFGEMPERNVVSWTALIVAYVKSGELEEAKRMFDLMP--- 200

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            + +  T+  ++     S  L+   ++   + K     ++ +   ++  Y K G +  AR
Sbjct: 201 -ERNLGTWNALVDGLVKSGDLVNARKLFDEMPK----RDIISYTSMIDGYAKGGDMVSAR 255

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT--- 242
            +  +    DV  W++++ GYAQNG+ +EA  V  EM +  +KPD   M  L+ + +   
Sbjct: 256 DLFENARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMG 315

Query: 243 -------------------------------NTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
                                          N    ++    ++F ++  ++LVS+  M+
Sbjct: 316 CFELCEKVDSYLHQSMNKFSSHYVIPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMM 375

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
              A +   +EAV L+ +M   GI P+ ++   +L  C   S   L  +  RY E  + +
Sbjct: 376 EGMAIHGCGSEAVRLFEKMVDEGIVPDEVAFTVILKVC---SQSRLVEEGLRYFELMRKE 432

Query: 332 PNLRLE----NALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTSMISAYGMSG 379
            ++       + +V++ ++ G L EA  +   M  +   S W S++    + G
Sbjct: 433 YSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHG 485



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 79/170 (46%), Gaps = 10/170 (5%)

Query: 77  CGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCV 136
           CG M     +F+E+  +++V +  ++     +    +A+ +++ M   G  PD   +  +
Sbjct: 350 CGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAVRLFEKMVDEGIVPDEVAFTVI 409

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG----NGLVAMYGKCGCLKEARRVLNDMP 192
           LK CS S  +  GL+    + K   +Y++       + +V +  + G LKEA  ++  MP
Sbjct: 410 LKVCSQSRLVEEGLRYFELMRK---EYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMP 466

Query: 193 -SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
                  W S++ G + +G  + A  V R++    ++P +     LL ++
Sbjct: 467 FEAHASAWGSLLGGCSLHGNTEIAEVVARQL--FELEPQSAGSYVLLSNI 514


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 168/534 (31%), Positives = 288/534 (53%), Gaps = 39/534 (7%)

Query: 54  IIINQHLHSNPSIGLKLMRTY-GACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYY 112
           ++   +L S+  +G  L+  +    G +V    VF+++  +N V + ++I   +      
Sbjct: 194 VVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAG 253

Query: 113 DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV 172
           +A+ ++  M + G++PD +T   V+ AC+    LL+G Q+H   ++ GL  +   G  L+
Sbjct: 254 EAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLI 313

Query: 173 AMYGKC---GCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE-ALDVCREMESLRIK 228
            MY KC   G +  AR++ + +   +V +W +M+ GY Q G +DE ALD+ R M    + 
Sbjct: 314 NMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVI 373

Query: 229 PDADTMASLLPSVTNTSP----ENVLS-----------------------------VKEM 255
           P+  T +S L +  N +     E V +                              ++ 
Sbjct: 374 PNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKA 433

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F  L  KNL+S+N +I  YA N    EA++L+ ++E  G+  +A + AS+L     +  +
Sbjct: 434 FDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTI 493

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
             G +IH  V +  L+ N  + NAL+ MY++CG++  A  VF+ M  ++V+SWTS+I+ +
Sbjct: 494 GKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGF 553

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
              G    A+ LF KML  G+ P+ + +++VLSACSH GL+ EG  +FK M  ++ ++PR
Sbjct: 554 AKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPR 613

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495
           +EH+AC+VD+LGR+G + EA   I  MP + +  +W + + AC ++ N+++G  AA  I 
Sbjct: 614 MEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMII 673

Query: 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
              P+    Y+LLSN+YA   +W +V  +RK M  K + K  G S VE+ ++V 
Sbjct: 674 EQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVH 727



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 191/393 (48%), Gaps = 47/393 (11%)

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
           +NN   + A+   ++M   G  PD  TY   LK C  + S  +G  +H  + +  L  + 
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDM-PSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
              N L+++Y KCG  ++A  +   M  S+D+++W++MV+ +A N     AL    +M  
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 225 LRIKPD-----ADTMA-----------SLLPSVTNT-------------------SPENV 249
               P+     A T A           S+   V  T                      ++
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
           +S  ++F K+  +N V+W +MI          EA+DL+L+M + G EP+  +++ V+ AC
Sbjct: 222 VSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISAC 281

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC---GSLTEARTVFDQMRCQDVV 366
            ++  LLLG+++H    R  L  +  +   L++MYAKC   GS+  AR +FDQ+   +V 
Sbjct: 282 ANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVF 341

Query: 367 SWTSMISAYGMSGQGYD--AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
           SWT+MI+ Y   G GYD  A+ LF  M+++ + P+   F S L AC++   L  G    +
Sbjct: 342 SWTAMITGYVQKG-GYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGE---Q 397

Query: 425 IMTEQYKL-VPRIEHFA-CLVDLLGRAGKVEEA 455
           + T   KL    +   A  L+ +  R+G++++A
Sbjct: 398 VFTHAVKLGFSSVNCVANSLISMYARSGRIDDA 430



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 212/450 (47%), Gaps = 46/450 (10%)

Query: 70  LMRTYGACGQMVDTRHVFDEI-TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
           L+  Y  CGQ      +F  + ++++++ ++ ++  + NN + + AL  + +M  +G+ P
Sbjct: 107 LISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYP 166

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKC-GCLKEARR 186
           + Y +    +ACS +  + VG  I   VVK G L  ++  G GL+ M+ K  G L  A +
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFK 226

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN--- 243
           V   MP ++ VTW  M+    Q G   EA+D+  EM     +PD  T++ ++ +  N   
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMEL 286

Query: 244 ---------------------------------TSPENVLSVKEMFLKLDNKNLVSWNVM 270
                                            +   ++ + +++F ++ + N+ SW  M
Sbjct: 287 LLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAM 346

Query: 271 IAVYAN-NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           I  Y        EA+DL+  M +  + PN  + +S L AC +L+AL +G ++  +  +  
Sbjct: 347 ITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLG 406

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
                 + N+L+ MYA+ G + +AR  FD +  ++++S+ ++I AY  +    +A+ LF+
Sbjct: 407 FSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFN 466

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC--LVDLLG 447
           ++   G+   +  F S+LS  +  G + +G    +I     K   ++    C  L+ +  
Sbjct: 467 EIEDQGMGASAFTFASLLSGAASIGTIGKGE---QIHARVIKSGLKLNQSVCNALISMYS 523

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           R G +E A+ + + M  + N   W S++  
Sbjct: 524 RCGNIESAFQVFEDME-DRNVISWTSIITG 552


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 174/550 (31%), Positives = 299/550 (54%), Gaps = 39/550 (7%)

Query: 37  ILDKYPDIKTLK---KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
           IL+     ++LK   ++H QI+  Q    +  +G  L+  Y  CG +      F  + ++
Sbjct: 111 ILNACASTESLKDGMEIHGQIL-QQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR 169

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           +VV +  +I + V +  +  A  +Y+ M + G  P+  T   V  A    N L  G  ++
Sbjct: 170 DVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVY 229

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
             V    ++ ++   N  V M+G  G L +ARR+  DM  +DVVTWN ++  Y QN  F 
Sbjct: 230 GLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFG 289

Query: 214 EALDVCREMESLRIKPDADT---MASLLPSVTNTSPENVLS--VKE-------------- 254
           EA+ +   ++   +K +  T   M ++  S+T+ +   V+   VKE              
Sbjct: 290 EAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALM 349

Query: 255 --------------MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                         +F+ + +K++++W VM   YA N    EA+ L+ +M++ G  P + 
Sbjct: 350 SLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSA 409

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           ++ +VL  C  L+AL  GR+IH ++   + +  + +E AL++MY KCG + EA +VF++M
Sbjct: 410 TLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKM 469

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             +D++ W SM+ AY   G   + + LF++M + G+  D+++FVSVLSA SH+G + +G 
Sbjct: 470 AKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGY 529

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP-MEPNERIWGSLVAACC 479
            YF  M + + + P  E + C+VDLLGRAG+++EA D++ ++    P+  +W +L+ AC 
Sbjct: 530 QYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACR 589

Query: 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG- 538
            ++  D    AA+ +    P+ SG YV+LSN+YA AG W  V R+RK M S+G+KK PG 
Sbjct: 590 THNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGR 649

Query: 539 ASVEMNDQVQ 548
           +S+E+ ++V 
Sbjct: 650 SSIEILNRVH 659



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 224/450 (49%), Gaps = 37/450 (8%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L++ Y  CG + + + VF+ +  K+V  +  +I  Y     Y  AL ++  M      P 
Sbjct: 45  LIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPT 104

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             TY  +L AC+ + SL  G++IH  +++ G + ++F G  L+ MY KCG ++ A     
Sbjct: 105 KVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFK 164

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
            +  +DVV+W +M+A   Q+ +F  A  + R M+   + P+  T+ ++  +         
Sbjct: 165 RLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSE 224

Query: 241 -------VTNTSPENVLSV-----------------KEMFLKLDNKNLVSWNVMIAVYAN 276
                  V++   E+ + V                 + +F  + ++++V+WN++I +Y  
Sbjct: 225 GKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQ 284

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N    EAV L+ +++  G++ N I+   +L     L++L  G+ IH  V+      +  +
Sbjct: 285 NENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVV 344

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
             AL+ +Y +C +  +A  +F  M  +DV++WT M  AY  +G   +A+ LF +M + G 
Sbjct: 345 ATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGR 404

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
            P S   V+VL  C+H   L++GR  +  I+  ++++   +E    L+++ G+ GK+ EA
Sbjct: 405 RPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVE--TALINMYGKCGKMAEA 462

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
             + ++M  + +  +W S++ A   +   D
Sbjct: 463 MSVFEKMA-KRDILVWNSMLGAYAQHGYYD 491



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 161/334 (48%), Gaps = 33/334 (9%)

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           PD   +  +L+ CS + ++  G ++H  V   G + N      L+ MY +CG + EA++V
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 61

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP- 246
              +  KDV  W  M+  Y Q G +D AL +  +M+   + P   T  ++L +  +T   
Sbjct: 62  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 121

Query: 247 --------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
                                            +V    + F +L+++++VSW  MIA  
Sbjct: 122 KDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAAC 181

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
             +   A A  LY +M++ G+ PN I++ +V  A GD + L  G+ ++  V    ++ ++
Sbjct: 182 VQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDV 241

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
           R+ N+ V+M+   G L +AR +F+ M  +DVV+W  +I+ Y  +    +AV LF ++   
Sbjct: 242 RVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQD 301

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
           G+  + I FV +L+  +    L +G+   +++ E
Sbjct: 302 GVKANDITFVLMLNVYTSLTSLAKGKVIHELVKE 335



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 140/292 (47%), Gaps = 18/292 (6%)

Query: 31  GDACNDI-----LDKYPDIKTLKK---LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD 82
           G   NDI     L+ Y  + +L K   +H +++       +  +   LM  YG C     
Sbjct: 302 GVKANDITFVLMLNVYTSLTSLAKGKVIH-ELVKEAGYDRDAVVATALMSLYGRCEAPGQ 360

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142
              +F ++ +K+V+ + V+  +Y  N    +AL +++ M + G  P   T   VL  C+ 
Sbjct: 361 AWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAH 420

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
             +L  G QIH  +++      +     L+ MYGKCG + EA  V   M  +D++ WNSM
Sbjct: 421 LAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSM 480

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK 262
           +  YAQ+G +DE L +  +M+   +K DA +  S+L +++++   +V    + F+ +   
Sbjct: 481 LGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSG--SVTDGYQYFVAMLQD 538

Query: 263 NLVS-----WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
             ++     +  ++ +        EAVD+ L++   G  P+ I   ++L AC
Sbjct: 539 FSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLS--GCLPDGILWMTLLGAC 588



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 99/185 (53%), Gaps = 6/185 (3%)

Query: 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355
           +P+     ++L  C     +  GR++H +V  +  + N  +   L+ MYA+CGS+ EA+ 
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415
           VF+ +  +DV +WT MI  Y   G    A+ +F +M    + P  + +V++L+AC+    
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 416 LEEG-RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI-WGS 473
           L++G   + +I+ + ++    +     L+++  + G V  A+D  K+  +E  + + W +
Sbjct: 121 LKDGMEIHGQILQQGFE--GDVFVGTALINMYNKCGSVRGAWDSFKR--LEHRDVVSWTA 176

Query: 474 LVAAC 478
           ++AAC
Sbjct: 177 MIAAC 181


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 257/460 (55%), Gaps = 34/460 (7%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M++ G     + Y   + AC    +L  G Q+H  ++       +F G  LV MY +CG 
Sbjct: 1   MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 60

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           L +AR VL+ MP + VV+W +M++GY+Q  R  EALD+  +M      P+  T+A++L S
Sbjct: 61  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 120

Query: 241 VTN---------------------------------TSPENVLSVKEMFLKLDNKNLVSW 267
            +                                     EN+   + +F  L  +++VS 
Sbjct: 121 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSC 180

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
             +I+ YA   +  EA+DL+ Q+   G++ N ++  +++ A   L++L  G+++H  + R
Sbjct: 181 TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILR 240

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
           K+L   + L+N+L+DMY+KCG L  +R VFD M  + VVSW +M+  YG  G G++ ++L
Sbjct: 241 KELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISL 300

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
           F K L   + PDS+  ++VLS CSH GL++EG   F  + ++   +    H+ C++DLLG
Sbjct: 301 F-KDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLG 359

Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507
           R+G++E+A +LI+ MP E    IWGSL+ AC +++N+ +G L A  +  + P  +G YV+
Sbjct: 360 RSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVI 419

Query: 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQV 547
           LSNIYA AG W DV +VRK M  K + K PG S  + D+V
Sbjct: 420 LSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKV 459



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 180/364 (49%), Gaps = 41/364 (11%)

Query: 48  KKLHAQIIINQHLHSNPSI--GLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
           +++HA++I  ++    P++  G +L+  Y  CG + D R+V D +  ++VV +  +I  Y
Sbjct: 30  RQVHARMITARY---RPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGY 86

Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
                + +AL ++  M   G  P+ YT   VL +CSG  S+  G Q+H  +VK   + ++
Sbjct: 87  SQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHM 146

Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
           F G+ L+ MY K   ++EARRV + +P +DVV+  ++++GYAQ G  +EALD+ R++ S 
Sbjct: 147 FVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSE 206

Query: 226 RIKPDADTMASLLPSVTNTSPEN---------------------------------VLSV 252
            ++ +  T  +L+ +++  +  +                                 +L  
Sbjct: 207 GMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYS 266

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           + +F  +  +++VSWN M+  Y  + +  E + L+  +    ++P+++++ +VL  C   
Sbjct: 267 RRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHG 325

Query: 313 SALLLGRKIH-RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTS 370
             +  G  I    V+ +    +      ++D+  + G L +A  + + M  +   S W S
Sbjct: 326 GLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGS 385

Query: 371 MISA 374
           ++ A
Sbjct: 386 LLGA 389


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 162/456 (35%), Positives = 257/456 (56%), Gaps = 35/456 (7%)

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
           D   Y  +LK C+    L+ G  +H  +++    +++  GN L+ MY KCG L+EAR+V 
Sbjct: 59  DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118

Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV------- 241
             MP +D VTW ++++GY+Q+ R  +AL    +M      P+  T++S++ +        
Sbjct: 119 EKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGC 178

Query: 242 ---------------TNTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYA 275
                          +N    + L             + +F  L+++N VSWN +IA +A
Sbjct: 179 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHA 238

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
             S   +A++L+  M   G  P+  S AS+  AC     L  G+ +H Y+ +   +    
Sbjct: 239 RRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAF 298

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
             N L+DMYAK GS+ +AR +FD++  +DVVSW S+++AY   G G +AV  F +M   G
Sbjct: 299 AGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVG 358

Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
           + P+ I+F+SVL+ACSH+GLL+EG +Y+++M +   +VP   H+  +VDLLGRAG +  A
Sbjct: 359 IRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRA 417

Query: 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
              I++MP+EP   IW +L+ AC ++ N ++G  AA+H+F L P+  G +V+L NIYA  
Sbjct: 418 LRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASG 477

Query: 516 GRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           GRW D  RVRK M   G+KK P  S VE+ + + + 
Sbjct: 478 GRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMF 513



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 187/406 (46%), Gaps = 45/406 (11%)

Query: 16  PVQALVLSTQYTLLSGDAC-------NDILDKYPDIKTL---KKLHAQIIINQHLHSNPS 65
           P   L+L T    L G          N +L K    K L   + +HA I+ +   H +  
Sbjct: 38  PSNDLLLRTSSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRH-DIV 96

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y  CG + + R VF+++  ++ V +  LI  Y  +    DAL  +  M   G
Sbjct: 97  MGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFG 156

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           + P+ +T   V+KA +       G Q+H   VK G D N+  G+ L+ +Y + G + +A+
Sbjct: 157 YSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQ 216

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT- 244
            V + + S++ V+WN+++AG+A+    ++AL++ + M     +P   + ASL  + ++T 
Sbjct: 217 LVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTG 276

Query: 245 --------------SPENVLS------------------VKEMFLKLDNKNLVSWNVMIA 272
                         S E +++                   +++F +L  +++VSWN ++ 
Sbjct: 277 FLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLT 336

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            YA +    EAV  + +M   GI PN IS  SVL AC     L  G   +  +++  + P
Sbjct: 337 AYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVP 396

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-WTSMISAYGM 377
                  +VD+  + G L  A    ++M  +   + W ++++A  M
Sbjct: 397 EAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRM 442



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 152/343 (44%), Gaps = 49/343 (14%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           SN  +G  L+  Y   G M D + VFD + ++N V +N LI  +        AL +++ M
Sbjct: 194 SNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGM 253

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181
              GF P  ++Y  +  ACS +  L  G  +H  ++K G     F GN L+ MY K G +
Sbjct: 254 LRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSI 313

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
            +AR++ + +  +DVV+WNS++  YAQ+G   EA+    EM  + I+P+  +  S+L + 
Sbjct: 314 HDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTAC 373

Query: 242 TNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA-- 299
           +++                                  +  E    Y  M+  GI P A  
Sbjct: 374 SHS---------------------------------GLLDEGWHYYELMKKDGIVPEAWH 400

Query: 300 -ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE-----A 353
            ++V  +L   GDL+  L      R++E   ++P   +  AL++   +    TE     A
Sbjct: 401 YVTVVDLLGRAGDLNRAL------RFIEEMPIEPTAAIWKALLNA-CRMHKNTELGAYAA 453

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
             VF ++   D      + + Y   G+  DA  +  KM  SG+
Sbjct: 454 EHVF-ELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGV 495


>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
           [Vitis vinifera]
          Length = 485

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 173/496 (34%), Positives = 269/496 (54%), Gaps = 39/496 (7%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           L ++HA I+   HLH +  I    +   GA  +M     VF +  N N++ FN +I+ Y 
Sbjct: 25  LPQIHAHIL-RHHLHQSNQILSHFISVCGALDKMGYANLVFHQTQNPNLLLFNSMIKGYS 83

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
                 ++L ++  M   G  PD +T+  +LK+CSG     +G  +H  V+ VG +    
Sbjct: 84  LCGPSENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFERFSS 143

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
              G++ +Y  CG +++A++V ++M  +DV+ WN M+ G+ + G  +    + R+M    
Sbjct: 144 IRIGIIDLYTSCGRMEDAKKVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMR--- 200

Query: 227 IKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
                                             ++++VSWN MIA    +    EA++L
Sbjct: 201 ----------------------------------DRSVVSWNSMIAGLEQSGRDGEALEL 226

Query: 287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN-LRLENALVDMYA 345
           + +M  HG EP+  +V ++LP C  L A+ +G  IH Y E  +L  + + + N+LVD Y 
Sbjct: 227 FREMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYC 286

Query: 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
           KCG L  A  VF++M  ++VVSW +MIS    +G+G     LF +M+  G+ P+   FV 
Sbjct: 287 KCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVG 346

Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME 465
           VLS C+HAGL+E GR  F  MT  +K+ P++EHF C+VDLL R G +EEA DL++ MPM 
Sbjct: 347 VLSCCAHAGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMR 406

Query: 466 PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVR 525
           PN  +WGSL++A     ++     A   +  L P  SG YVLLSN+YA+ G+W +V++VR
Sbjct: 407 PNAVLWGSLLSAYRTIGDVKHAECAVKELIELEPWNSGNYVLLSNVYAEDGKWDEVEKVR 466

Query: 526 KFMNSKGIKKMPGASV 541
             M  K I+K PG S+
Sbjct: 467 ALMKEKNIRKNPGQSM 482


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 167/505 (33%), Positives = 280/505 (55%), Gaps = 34/505 (6%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
           +F+++ + +VV +N LI   V N   + A+ +   M   G  P+ +T   +LKACSG+ +
Sbjct: 259 IFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGA 318

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
             +G QIH  ++K   D + + G GLV MY K   L +AR+V + M  +D++  N++++G
Sbjct: 319 FDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISG 378

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV------TNTSPENVLSVK------ 253
            +  GR DEAL +  E+    +  +  T+A++L S       + T   + L+VK      
Sbjct: 379 CSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFD 438

Query: 254 ---------------------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
                                 +F +  + ++++   MI   +       A+ L+++M  
Sbjct: 439 AHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLR 498

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
            G+EP+   ++S+L AC  LSA   G+++H ++ +++   +    NALV  YAKCGS+ +
Sbjct: 499 KGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIED 558

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           A   F  +  + VVSW++MI      G G  A+ LF +M+  G+ P+ I   SVL AC+H
Sbjct: 559 AELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNH 618

Query: 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG 472
           AGL++E + YF  M E + +    EH++C++DLLGRAGK+++A +L+  MP + N  IWG
Sbjct: 619 AGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWG 678

Query: 473 SLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532
           +L+ A  ++ + ++G LAA+ +F L P +SG +VLL+N YA AG W +V +VRK M    
Sbjct: 679 ALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSN 738

Query: 533 IKKMPGAS-VEMNDQVQIIALPLRS 556
           IKK P  S +E+ D+V    +  +S
Sbjct: 739 IKKEPAMSWIEVKDKVHTFIVGDKS 763



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/488 (26%), Positives = 233/488 (47%), Gaps = 46/488 (9%)

Query: 31  GDACND-----ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH 85
           G  CN+     +L   PD +   ++HA  +      S+  +   L+  YG  G M D R 
Sbjct: 98  GVCCNEFALPVVLKCVPDARLGAQVHAMAMATG-FGSDVFVANALVAMYGGFGFMDDARR 156

Query: 86  VFDEI-TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
           VF+E  + +N V +N L+ +YV N    DA+ V+  M   G  P  + + CV+ AC+GS 
Sbjct: 157 VFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSR 216

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
           ++  G Q+H  VV++G D ++F  N LV MY K G +  A  +   MP  DVV+WN++++
Sbjct: 217 NIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALIS 276

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT------------------NTSP 246
           G   NG    A+++  +M+   + P+  T++S+L + +                  N   
Sbjct: 277 GCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADS 336

Query: 247 ENVLSV---------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
           ++ + V               +++F  + +++L+  N +I+  ++     EA+ L+ ++ 
Sbjct: 337 DDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELR 396

Query: 292 VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351
             G+  N  ++A+VL +   L A    R++H    +     +  + N L+D Y KC  L+
Sbjct: 397 KEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLS 456

Query: 352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
           +A  VF++    D+++ TSMI+A      G  A+ LF +ML  GL PD     S+L+AC+
Sbjct: 457 DANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACA 516

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFA--CLVDLLGRAGKVEEAYDLIKQMPMEPNER 469
                E+G+   ++     K     + FA   LV    + G +E+A      +P E    
Sbjct: 517 SLSAYEQGK---QVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVV 572

Query: 470 IWGSLVAA 477
            W +++  
Sbjct: 573 SWSAMIGG 580



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 188/394 (47%), Gaps = 40/394 (10%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           LHA ++ +  L    S    L+  Y  C +    R VFDEI +   V ++ L+ +Y NN 
Sbjct: 26  LHASLLKSGSL---ASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNG 82

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
           L   A+  +  M   G   + +  P VLK    +    +G Q+H   +  G   ++F  N
Sbjct: 83  LPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAR---LGAQVHAMAMATGFGSDVFVAN 139

Query: 170 GLVAMYGKCGCLKEARRVLNDMPS-KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
            LVAMYG  G + +ARRV N+  S ++ V+WN +++ Y +N +  +A+ V  EM    I+
Sbjct: 140 ALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQ 199

Query: 229 PDADTMASLLPSVTNTS-----------------PENVLSVKEM---------------- 255
           P     + ++ + T +                   ++V +   +                
Sbjct: 200 PTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVI 259

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F K+ + ++VSWN +I+    N     A++L LQM+  G+ PN  +++S+L AC    A 
Sbjct: 260 FEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAF 319

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
            LGR+IH ++ +     +  +   LVDMYAK   L +AR VFD M  +D++   ++IS  
Sbjct: 320 DLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGC 379

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
              G+  +A++LF ++   GL  +     +VL +
Sbjct: 380 SHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKS 413



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 150/319 (47%), Gaps = 33/319 (10%)

Query: 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWN 200
           + + +LL G  +H S++K G   +    N L++ Y KC     ARRV +++P    V+W+
Sbjct: 15  AAAQALLPGAHLHASLLKSGSLASF--RNHLISFYSKCRRPCCARRVFDEIPDPCHVSWS 72

Query: 201 SMVAGYAQNGRFDEALDVCREMES-------------LRIKPDA------DTMASLLPSV 241
           S+V  Y+ NG    A+     M +             L+  PDA        MA      
Sbjct: 73  SLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFG 132

Query: 242 TNTSPENVL-----------SVKEMFLKLDN-KNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
           ++    N L             + +F + D+ +N VSWN +++ Y  N    +A+ ++ +
Sbjct: 133 SDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGE 192

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M   GI+P     + V+ AC     +  GR++H  V R     ++   NALVDMY K G 
Sbjct: 193 MVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGR 252

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           +  A  +F++M   DVVSW ++IS   ++G  + A+ L  +M  SGL P+     S+L A
Sbjct: 253 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKA 312

Query: 410 CSHAGLLEEGRYYFKIMTE 428
           CS AG  + GR     M +
Sbjct: 313 CSGAGAFDLGRQIHGFMIK 331


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 157/432 (36%), Positives = 257/432 (59%), Gaps = 40/432 (9%)

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
           + N+     +V  Y K   L+ ARR  + MP + VV+WN+M++GYAQNG  +EAL +  E
Sbjct: 191 ERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDE 250

Query: 222 MESLRIKPDADTMASLLPSVTNTSPE---------------------------------N 248
           M +  I+PD  T  +++ + ++                                     +
Sbjct: 251 MVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGD 310

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLP 307
           + S +++F  +  +N+V+WN MIA YA N   A A++L+ +M     + P+ +++ SV+ 
Sbjct: 311 LDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVIS 370

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
           ACG L AL LG  + R++   +++ ++   NA++ MY++CGS+ +A+ VF +M  +DVVS
Sbjct: 371 ACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVS 430

Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
           + ++IS +   G G +A+ L S M   G+ PD + F+ VL+ACSHAGLLEEGR  F+ + 
Sbjct: 431 YNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK 490

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
           +     P I+H+AC+VDLLGR G++E+A   +++MPMEP+  ++GSL+ A  ++  +++G
Sbjct: 491 D-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELG 545

Query: 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
            LAA+ +F L P+ SG ++LLSNIYA AGRW DV+R+R+ M   G+KK  G S VE   +
Sbjct: 546 ELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGK 605

Query: 547 VQIIALPLRSSK 558
           +    +  RS +
Sbjct: 606 LHKFIVADRSHE 617



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 130/437 (29%), Positives = 221/437 (50%), Gaps = 31/437 (7%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH----VFDEITN 92
           I  +  +   L++LHAQII N   H N  + L +      C ++    H    +F+   N
Sbjct: 7   IASRVGNFNHLRQLHAQIIHNSLHHHNYWVALLI----NHCTRLRAPPHYTHLLFNSTLN 62

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
            NV  F  ++R Y +   +   + +Y+ M   G  PD + YP ++K+         G+  
Sbjct: 63  PNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTG-----GIGF 117

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP--SKDVVTWNSMVAGYAQ-- 208
           H  V+K+G   + F  N ++ MY + G +  AR+V +++P   + V  WN+MV+GY +  
Sbjct: 118 HAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWE 177

Query: 209 -NGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSW 267
             G+     DV          P+ + +            +++ + +  F  +  +++VSW
Sbjct: 178 SEGQAQWLFDVM---------PERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSW 228

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
           N M++ YA N +  EA+ L+ +M   GIEP+  +  +V+ AC       L   + R + +
Sbjct: 229 NAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQ 288

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
           K++Q N  +  AL+DMYAK G L  AR +F+ M  ++VV+W SMI+ Y  +GQ   A+ L
Sbjct: 289 KRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIEL 348

Query: 388 FSKMLMS-GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE-QYKLVPRIEHFACLVDL 445
           F +M+ +  L PD +  VSV+SAC H G LE G +  + +TE Q KL   I     ++ +
Sbjct: 349 FKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKL--SISGHNAMIFM 406

Query: 446 LGRAGKVEEAYDLIKQM 462
             R G +E+A  + ++M
Sbjct: 407 YSRCGSMEDAKRVFQEM 423



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 162/349 (46%), Gaps = 32/349 (9%)

Query: 23  STQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD 82
           +T  T++S  AC+   D       ++ LH      + +  N  +   L+  Y   G +  
Sbjct: 261 TTWVTVIS--ACSSRGDPCLAASLVRTLH-----QKRIQLNCFVRTALLDMYAKFGDLDS 313

Query: 83  TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACS 141
            R +F+ +  +NVV +N +I  Y  N     A+ ++K M +     PD  T   V+ AC 
Sbjct: 314 ARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACG 373

Query: 142 GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNS 201
              +L +G  +   + +  +  ++   N ++ MY +CG +++A+RV  +M ++DVV++N+
Sbjct: 374 HLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNT 433

Query: 202 MVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN 261
           +++G+A +G   EA+++   M+   I+PD  T   +L + ++     +   +++F  + +
Sbjct: 434 LISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGL--LEEGRKVFESIKD 491

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
             +  +  M+ +        E  D    ME   +EP+A          G   +LL   +I
Sbjct: 492 PAIDHYACMVDLLGR---VGELEDAKRTMERMPMEPHA----------GVYGSLLNASRI 538

Query: 322 HRYVERKKLQPN----LRLENA-----LVDMYAKCGSLTEARTVFDQMR 361
           H+ VE  +L  N    L  +N+     L ++YA  G   +   + + M+
Sbjct: 539 HKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMK 587


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 174/548 (31%), Positives = 295/548 (53%), Gaps = 35/548 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++  +K+HA ++I      +      L+  Y   G +     VF ++   +VV +N  I
Sbjct: 217 DLEAGRKVHA-MVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFI 275

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
              V +     AL +   M   G  P+ +T   +LKAC+GS +  +G QIH  +VK   D
Sbjct: 276 SGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANAD 335

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            + +   GLV MY K G L +A++V + +P +D+V WN++++G +   +  EAL +   M
Sbjct: 336 SDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRM 395

Query: 223 ESLRIKPDADTMASLLPS------VTNTSPENVLSVKEMFL------------------- 257
                  +  T+A++L S      +++T   + L+ K  FL                   
Sbjct: 396 RKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCL 455

Query: 258 --------KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                   K  + +++++  MI   +      +A+ L+++M   G++P+   ++S+L AC
Sbjct: 456 NYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNAC 515

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             LSA   G+++H ++ +++   ++   NALV  YAKCGS+ +A   F  +  + VVSW+
Sbjct: 516 ASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWS 575

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           +MI      G G  A+ +F +M+   + P+ I   SVL AC+HAGL++E + YF  M E 
Sbjct: 576 AMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEM 635

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           + +    EH+AC++DLLGRAGK+++A +L+  MP + N  +WG+L+AA  ++ + ++G L
Sbjct: 636 FGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRL 695

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           AA+ +F L P +SG +VLL+N YA AG W DV +VRK M    +KK P  S VE+ D+V 
Sbjct: 696 AAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVH 755

Query: 549 IIALPLRS 556
              +  +S
Sbjct: 756 TFIVGDKS 763



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 149/568 (26%), Positives = 268/568 (47%), Gaps = 54/568 (9%)

Query: 34  CND-----ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFD 88
           CN+     +L   PD     +LHA + +   L  +  +   L+  YG  G + + R VFD
Sbjct: 101 CNEFVLPVVLKCAPDAGFGTQLHA-LAMATGLGGDIFVANALVAMYGGFGFVDEARMVFD 159

Query: 89  EIT-NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLL 147
           E    +N V +N L+ +YV N     A+ V+  M   G  P+ + + CV+ AC+GS  L 
Sbjct: 160 EAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLE 219

Query: 148 VGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA 207
            G ++H  V++ G D ++F  N LV MY K G ++ A  V   +P  DVV+WN+ ++G  
Sbjct: 220 AGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCV 279

Query: 208 QNGRFDEALDVCREMESLRIKPDADTMASLLPSV------------------TNTSPENV 249
            +G    AL++  +M+S  + P+  T++S+L +                    N   +N 
Sbjct: 280 LHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNY 339

Query: 250 LS---------------VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
           ++                K++F  +  ++LV WN +I+  ++ +  AEA+ L+ +M   G
Sbjct: 340 IAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEG 399

Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
            + N  ++A+VL +   L A+   R++H   E+     +  + N L+D Y KC  L  A 
Sbjct: 400 FDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAY 459

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            VF++    D++++TSMI+A      G DA+ LF +ML  GL PD     S+L+AC+   
Sbjct: 460 RVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLS 519

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
             E+G+     + ++ + +  +     LV    + G +E+A      +P E     W ++
Sbjct: 520 AYEQGKQVHAHLIKR-QFMSDVFAGNALVYTYAKCGSIEDADLAFSGLP-EKGVVSWSAM 577

Query: 475 VAACCLYSN----MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530
           +     + +    +D+     D   H++PN    ++ ++++       G V   +++ NS
Sbjct: 578 IGGLAQHGHGKRALDVFHRMVDE--HISPN----HITMTSVLCACNHAGLVDEAKRYFNS 631

Query: 531 KGIKKMPGASVEMNDQVQIIALPLRSSK 558
             +K+M G          +I L  R+ K
Sbjct: 632 --MKEMFGIERTEEHYACMIDLLGRAGK 657



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 137/535 (25%), Positives = 230/535 (42%), Gaps = 77/535 (14%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  C      R VFDEI +   V ++ L+ +Y NN +  DAL  +++M       +
Sbjct: 43  LLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCN 102

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +  P VLK    +     G Q+H   +  GL  ++F  N LVAMYG  G + EAR V +
Sbjct: 103 EFVLPVVLKCAPDAG---FGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFD 159

Query: 190 DMP-SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS--- 245
           +    ++ V+WN +++ Y +N R   A+ V  EM    ++P+    + ++ + T +    
Sbjct: 160 EAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLE 219

Query: 246 --------------PENVLSVKEM----------------FLKLDNKNLVSWNVMIAVYA 275
                          ++V +   +                F K+   ++VSWN  I+   
Sbjct: 220 AGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCV 279

Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
            +     A++L LQM+  G+ PN  +++S+L AC    A  LGR+IH ++ +     +  
Sbjct: 280 LHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNY 339

Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
           +   LVDMYAK G L +A+ VFD +  +D+V W ++IS      Q  +A++LF +M   G
Sbjct: 340 IAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEG 399

Query: 396 LCPDSIAFVSVLSACS-----------HA-----GLLEEGRY-------YFK--IMTEQY 430
              +     +VL + +           HA     G L +          Y+K   +   Y
Sbjct: 400 FDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAY 459

Query: 431 KLVPR-----IEHFACLVDLLGRAGKVEEAYDLIKQM---PMEPNERIWGSLVAACCLYS 482
           ++  +     I  F  ++  L +    E+A  L  +M    ++P+  +  SL+ AC   S
Sbjct: 460 RVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLS 519

Query: 483 NMDIGILAADHIFHLAPNQSGYYVLLSN----IYAKAGRWGDVKRVRKFMNSKGI 533
             + G        HL   Q    V   N     YAK G   D       +  KG+
Sbjct: 520 AYEQGKQVHA---HLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGV 571



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 171/369 (46%), Gaps = 35/369 (9%)

Query: 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWN 200
           + + SLL G  IH  ++K GL + +F  N L++ Y KC     ARRV +++P    V+W+
Sbjct: 15  AATQSLLQGAHIHAHLLKSGL-FAVFR-NHLLSFYSKCRLPGSARRVFDEIPDPCHVSWS 72

Query: 201 SMVAGYAQNGRFDEALDVCREMES-------------LRIKPDA--DTMASLLPSVTNTS 245
           S+V  Y+ N    +AL   R M S             L+  PDA   T    L   T   
Sbjct: 73  SLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGFGTQLHALAMATGLG 132

Query: 246 PENVLS------------VKEMFLKLD----NKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
            +  ++            V E  +  D     +N VSWN +++ Y  N   + AV ++ +
Sbjct: 133 GDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGE 192

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M   G++PN    + V+ AC     L  GRK+H  V R     ++   NALVDMY+K G 
Sbjct: 193 MVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGD 252

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           +  A  VF ++   DVVSW + IS   + G    A+ L  +M  SGL P+     S+L A
Sbjct: 253 IRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKA 312

Query: 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNER 469
           C+ +G    GR     M +          F  LVD+  + G +++A  +   +P + +  
Sbjct: 313 CAGSGAFNLGRQIHGFMVKANADSDNYIAFG-LVDMYAKHGLLDDAKKVFDWIP-QRDLV 370

Query: 470 IWGSLVAAC 478
           +W +L++ C
Sbjct: 371 LWNALISGC 379


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 173/548 (31%), Positives = 298/548 (54%), Gaps = 35/548 (6%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           +I+  +++HA +++      +      L+  Y   G++     +F+++ + +VV +N LI
Sbjct: 217 NIEAGRQVHA-MVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALI 275

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
              V N   + A+ +   M   G  P+ +T   +LKACSG+ +  +G QIH  ++K   D
Sbjct: 276 SGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANAD 335

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            + + G GLV MY K   L +AR+V + M  +D++  N++++G +  GR DEAL +  E+
Sbjct: 336 SDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYEL 395

Query: 223 ESLRIKPDADTMASLLPSV------TNTSPENVLSVK----------------------- 253
               +  +  T+A++L S       + T   + L+VK                       
Sbjct: 396 RKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCL 455

Query: 254 ----EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
                +F +  + ++++   MI   +       A+ L+++M   G+EP+   ++S+L AC
Sbjct: 456 SDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
             LSA   G+++H ++ +++   +    NALV  YAKCGS+ +A   F  +  + VVSW+
Sbjct: 516 ASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWS 575

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           +MI      G G  A+ LF +M+  G+ P+ I   SVL AC+HAGL++E + YF  M E 
Sbjct: 576 AMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEM 635

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           + +    EH++C++DLLGRAGK+++A +L+  MP + N  IWG+L+ A  ++ + ++G L
Sbjct: 636 FGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKL 695

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           AA+ +F L P +SG +VLL+N YA AG W +V +VRK M    IKK P  S +E+ D+V 
Sbjct: 696 AAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVH 755

Query: 549 IIALPLRS 556
              +  +S
Sbjct: 756 TFIVGDKS 763



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 232/486 (47%), Gaps = 42/486 (8%)

Query: 31  GDACND-----ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH 85
           G  CN+     +L   PD +   ++HA  +      S+  +   L+  YG  G M D R 
Sbjct: 98  GVCCNEFALPVVLKCVPDARLGAQVHAMAMATG-FGSDVFVANALVAMYGGFGFMDDARR 156

Query: 86  VFDEI-TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
           VF+E  + +N V +N L+ +YV N    DA+ V+  M   G  P  + + CV+ AC+GS 
Sbjct: 157 VFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSR 216

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
           ++  G Q+H  VV++G D ++F  N LV MY K G +  A  +   MP  DVV+WN++++
Sbjct: 217 NIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALIS 276

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT------------------NTSP 246
           G   NG    A+++  +M+   + P+  T++S+L + +                  N   
Sbjct: 277 GCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADS 336

Query: 247 ENVLSV---------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
           ++ + V               +++F  + +++L+  N +I+  ++     EA+ L+ ++ 
Sbjct: 337 DDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELR 396

Query: 292 VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351
             G+  N  ++A+VL +   L A    R++H    +     +  + N L+D Y KC  L+
Sbjct: 397 KEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLS 456

Query: 352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
           +A  VF++    D+++ TSMI+A      G  A+ LF +ML  GL PD     S+L+AC+
Sbjct: 457 DANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACA 516

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIW 471
                E+G+     + ++  +       A LV    + G +E+A      +P E     W
Sbjct: 517 SLSAYEQGKQVHAHLIKRQFMSDAFAGNA-LVYTYAKCGSIEDAELAFSSLP-ERGVVSW 574

Query: 472 GSLVAA 477
            +++  
Sbjct: 575 SAMIGG 580



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 187/394 (47%), Gaps = 40/394 (10%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
           LHA ++ +  L    S    L+  Y  C +    R  FDEI +   V ++ L+ +Y NN 
Sbjct: 26  LHASLLKSGSL---ASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNG 82

Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
           L   A+  +  M   G   + +  P VLK    +    +G Q+H   +  G   ++F  N
Sbjct: 83  LPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAR---LGAQVHAMAMATGFGSDVFVAN 139

Query: 170 GLVAMYGKCGCLKEARRVLNDMPS-KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
            LVAMYG  G + +ARRV N+  S ++ V+WN +++ Y +N +  +A+ V  EM    I+
Sbjct: 140 ALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQ 199

Query: 229 PDADTMASLLPSVTNTS-----------------PENVLSVKEM---------------- 255
           P     + ++ + T +                   ++V +   +                
Sbjct: 200 PTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVI 259

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F K+ + ++VSWN +I+    N     A++L LQM+  G+ PN  +++S+L AC    A 
Sbjct: 260 FEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAF 319

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
            LGR+IH ++ +     +  +   LVDMYAK   L +AR VFD M  +D++   ++IS  
Sbjct: 320 DLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGC 379

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
              G+  +A++LF ++   GL  +     +VL +
Sbjct: 380 SHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKS 413



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 149/319 (46%), Gaps = 33/319 (10%)

Query: 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWN 200
           + + +LL G  +H S++K G   +    N L++ Y KC     ARR  +++P    V+W+
Sbjct: 15  AAAQALLPGAHLHASLLKSGSLASF--RNHLISFYSKCRRPCCARRFFDEIPDPCHVSWS 72

Query: 201 SMVAGYAQNGRFDEALDVCREMES-------------LRIKPDA------DTMASLLPSV 241
           S+V  Y+ NG    A+     M +             L+  PDA        MA      
Sbjct: 73  SLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFG 132

Query: 242 TNTSPENVL-----------SVKEMFLKLDN-KNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
           ++    N L             + +F + D+ +N VSWN +++ Y  N    +A+ ++ +
Sbjct: 133 SDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGE 192

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M   GI+P     + V+ AC     +  GR++H  V R     ++   NALVDMY K G 
Sbjct: 193 MVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGR 252

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           +  A  +F++M   DVVSW ++IS   ++G  + A+ L  +M  SGL P+     S+L A
Sbjct: 253 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKA 312

Query: 410 CSHAGLLEEGRYYFKIMTE 428
           CS AG  + GR     M +
Sbjct: 313 CSGAGAFDLGRQIHGFMIK 331


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 183/541 (33%), Positives = 283/541 (52%), Gaps = 38/541 (7%)

Query: 48   KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
            +++HA +  +  + +  SIG  L+  YG C  + +   VF  + +K+ V +N +I    +
Sbjct: 475  QEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDH 534

Query: 108  NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
            N  + +A+  +  M  +G  P  ++    L +CS    L +G QIH    K GLD ++  
Sbjct: 535  NERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSV 594

Query: 168  GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ-NGRFDEALDVCREMESLR 226
             N L+ +Y +   + E ++V   MP  D V+WNS +   A+      +AL    EM    
Sbjct: 595  SNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAG 654

Query: 227  IKPDADTMASLLPSVTNTSP----------------------ENVL-----------SVK 253
             +P+  T  ++L +V++ S                       EN L             +
Sbjct: 655  WRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCE 714

Query: 254  EMFLKL-DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
             +F ++ + ++ VSWN MI+ Y ++ +  +A+DL   M   G + +  + A+VL AC  +
Sbjct: 715  IIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASV 774

Query: 313  SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
            + L  G ++H    R  L+ ++ + +ALVDMYAKCG +  A   F+ M  +++ SW SMI
Sbjct: 775  ATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMI 834

Query: 373  SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
            S Y   G G  A+ +F++M   G  PD + FV VLSACSH GL++EG  +FK M E Y L
Sbjct: 835  SGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGL 894

Query: 433  VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS--NMDIGILA 490
             PRIEHF+C+VDLLGRAG V++  D IK MPM+PN  IW +++ ACC  +  N ++G  A
Sbjct: 895  SPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRA 954

Query: 491  ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQI 549
            A  +  L P  +  YVLLSN++A  G W DV   R  M    +KK  G S V M D V +
Sbjct: 955  AKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHL 1014

Query: 550  I 550
             
Sbjct: 1015 F 1015



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 218/461 (47%), Gaps = 54/461 (11%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G +V  R +FDE+  KN+V ++ LI  Y  N +  +A  ++K +   G  P+
Sbjct: 181 LINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPN 240

Query: 130 CYTYPCVLKACS--GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC-GCLKEARR 186
            +     L+AC   GS  + +G+QIH  + K+    ++   N L++MY  C G + +A R
Sbjct: 241 HFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHR 300

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME----SLRIKPDADTMASLLPSVT 242
           V +++  ++ VTWNS+++ Y + G    A  +   M+     L ++P+  T+ SL+ +  
Sbjct: 301 VFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAAC 360

Query: 243 NTSPENVLSVKEMFLKLD-----------------------------------NKNLVSW 267
           + +   ++ +++M  +++                                   ++N V+ 
Sbjct: 361 SLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTM 420

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK----IHR 323
           N ++   A      EA  ++ +M+   +E N+ S+  +L    + S L  G++    +H 
Sbjct: 421 NGLMVGLARQHQGEEAAKVFKEMK-DLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHA 479

Query: 324 YVERKKL-QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY 382
           Y+ R  L    + + NALV+MY KC ++  A +VF  M  +D VSW SMIS    + +  
Sbjct: 480 YLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFE 539

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK--LVPRIEHFA 440
           +AV+ F  M  +G+ P + + +S LS+CS  G L  GR   +I  E +K  L   +    
Sbjct: 540 EAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGR---QIHGEGFKWGLDLDVSVSN 596

Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
            L+ L      + E   +  QMP E ++  W S + A   Y
Sbjct: 597 ALLTLYAETDSINECQKVFFQMP-EYDQVSWNSFIGALAKY 636



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 198/442 (44%), Gaps = 72/442 (16%)

Query: 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSM 202
           S+SL     +H  + K G   ++F  N L+ +Y + G L  AR++ ++MP K++V+W+ +
Sbjct: 153 SSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCL 212

Query: 203 VAGYAQNGRFDE----------------------ALDVCREMESLRIKPDADTMASL--L 238
           ++GY QN   DE                      AL  C++  S  IK      A +  L
Sbjct: 213 ISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKL 272

Query: 239 PSVTNTSPENVL------------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
           P V++    NVL                +F ++  +N V+WN +I+VY        A  L
Sbjct: 273 PCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKL 332

Query: 287 YLQMEVHGIE----PNAISVASVLPACGDLS--ALLLGRKIHRYVERKKLQPNLRLENAL 340
           +  M++ G+E    PN  ++ S++ A   L+   L+L  ++   +E+     +L + +AL
Sbjct: 333 FSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSAL 392

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           V+ +A+ G +  A+ +F QM  ++ V+   ++       QG +A  +F +M    +  +S
Sbjct: 393 VNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEM-KDLVEINS 451

Query: 401 IAFVSVLSACSHAGLLEEGR--------YYFKIMTEQYKLV-PRIEHFACLVDLLGRAGK 451
            + V +LS  +    L+EG+        Y F+       LV  RI     LV++ G+   
Sbjct: 452 ESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFR-----SGLVDARISIGNALVNMYGKCTA 506

Query: 452 VEEAYDLIKQMPMEPNERIWGSLV-----------AACCLYSNMDIGILAADH--IFHLA 498
           ++ A  + + MP   +   W S++           A  C ++    G++ ++   I  L+
Sbjct: 507 IDNACSVFQLMP-SKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLS 565

Query: 499 PNQS-GYYVLLSNIYAKAGRWG 519
              S G+  L   I+ +  +WG
Sbjct: 566 SCSSLGWLTLGRQIHGEGFKWG 587


>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 177/503 (35%), Positives = 270/503 (53%), Gaps = 53/503 (10%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           +K  K LHA+ I N  +  +  IG  L+  Y  CG +VD+R VFD +  +N V +N +I 
Sbjct: 110 VKHGKALHAESIKNG-VDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMIC 168

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
            Y+ N     A+ +++ MS                             I  +V  + +  
Sbjct: 169 GYLGNGDSKSAVLLFEKMS-----------------------------IRTAVTWIEM-- 197

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPS--KDVVTWNSMVAGYAQNGRFDEALDVCRE 221
                   +  + + G  + ARR  +D+PS  ++VVTW  MV GYA+N   + A +V   
Sbjct: 198 --------IDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEG 249

Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
           M      P  +  A            NV   + +F ++  +NLV+WN +I+ YA N    
Sbjct: 250 M------PQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSE 303

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
           EA++ + +M+  G EP+ +++ASVL AC  L  L  G+KIH  +  K ++ N  + N LV
Sbjct: 304 EALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLV 363

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           DMYAKCG L  AR +F+ M  ++   W SMIS + + GQ  +A+  F +M  S   PD I
Sbjct: 364 DMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEI 423

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
            F+SVLSAC+H G +  G   F  M E+Y L   I+H+ CL+DLLGRAG+++EAYDLIK+
Sbjct: 424 TFLSVLSACAHGGFVNAGLEIFSRM-EKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKR 482

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS----GYYVLLSNIYAKAGR 517
           MP++PN+ +WG+L+ AC ++ +M++     + I  +  N S     +YVLLSNIYA + R
Sbjct: 483 MPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYAASDR 542

Query: 518 WGDVKRVRKFMNSKGIKKMPGAS 540
           W   +++R  M +KG +K  G S
Sbjct: 543 WEKAEKMRMEMANKGFQKTSGCS 565


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 165/507 (32%), Positives = 284/507 (56%), Gaps = 12/507 (2%)

Query: 47  LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           L ++HAQI ++ +L SN  +  +L+ +  +   +     +F    + N+  FN LIR   
Sbjct: 56  LHQIHAQIFLH-NLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLA 114

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
            N  +  ++  +  M      PD  T P VLK+ +    + +G  +H  V+K+GL+++ F
Sbjct: 115 ENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSF 174

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKD----VVTWNSMVAGYAQNGRFDEALDVCREM 222
               LV MY K G L    ++ ++ P ++    ++ WN ++ G  + G   +A  +   M
Sbjct: 175 VRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAM 234

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
                + +A +  SL+         ++   +E+F+++  KN+VSW  MI  ++ N    +
Sbjct: 235 P----ERNAGSWNSLINGFVRNG--DLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEK 288

Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
           A+ ++ +M   G+ PN ++V S L AC  + AL +G +IH Y+     Q N  +  ALVD
Sbjct: 289 ALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVD 348

Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
           MYAKCG++  A  VF + + +D+++W+ MI  + + G    A+  F KM  +G+ PD + 
Sbjct: 349 MYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVI 408

Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
           F+++L+ACSH+G +++G  +F+ M   Y + P ++H+  +VDLLGRAG+++EA   I+ M
Sbjct: 409 FLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSM 468

Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
           P+ P+  IWG+L  AC  + N+++  L A+ +  L P   G YV LSN+YA  GRW DV+
Sbjct: 469 PINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVE 528

Query: 523 RVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           RVR  M ++G++K PG S +E+  QV 
Sbjct: 529 RVRTLMKNRGVEKDPGWSYIEVEGQVH 555


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 179/532 (33%), Positives = 281/532 (52%), Gaps = 50/532 (9%)

Query: 25  QYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR 84
           Q+ +L+ D    +L      +   +LHA  +    +  + ++  +L R Y A G++    
Sbjct: 24  QHGVLTADRAAALLAGCASARRASELHAAAV-RAGVDQDKAVDFRLQRAYAASGRLDLAV 82

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSV-HGFDPDCYTYPCVLKACSGS 143
            +     +   VF+   I ++ +  L++ AL +   M + HG  P  +T    L AC G 
Sbjct: 83  ALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPACGG- 141

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM-PSKDVVTWNSM 202
             L VG  +H   VK+ L    +    L+ MY + G    AR + + M P   VV+  +M
Sbjct: 142 --LAVGRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAM 199

Query: 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK 262
           +  YA+ G  D+A                                     + +F  L +K
Sbjct: 200 LTCYAKMGLLDDA-------------------------------------RSLFDGLPSK 222

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH 322
           +L+ WN M+  Y  +  P+EA+ L+ +M   G+EP+ +SV   L A   L     GR +H
Sbjct: 223 DLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLH 282

Query: 323 RYV---ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYGM 377
            +V     ++++ N R+  AL+DMY KCGSL +A  VF  +    +D+V+W +M++ Y M
Sbjct: 283 SFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAM 342

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
            G   +A+A F ++   GL P  I F+ VL+ACSH+GL++EGR  F+ M E+Y + P++E
Sbjct: 343 HGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVE 402

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMP-MEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
           H+ C+VDLLGRAG+VEEA++L++ M   +P+  +W SL+AAC L+ NM++G   ADH+  
Sbjct: 403 HYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVA 462

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
                SG YVLLSN+YA AG W +V RVR  M + GI+K PG S VE+  +V
Sbjct: 463 NGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVGRRV 514


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 187/581 (32%), Positives = 302/581 (51%), Gaps = 76/581 (13%)

Query: 41  YPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
           + D++T K LHA + I   + ++  +    +  Y  C ++   R VFD   + NV  FN 
Sbjct: 21  HRDLRTGKSLHA-LYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNT 79

Query: 101 LIRSYVNN------YLYYD-------------------------ALHVYKNMSVHGFDPD 129
           LI +Y         +  +D                         A  ++  M     D D
Sbjct: 80  LISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMD 139

Query: 130 CYTYPCVLKACSGSNSLLVGL--QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
            +T   ++ AC G N   VGL  Q+H   V  GLD  +  GN L+  Y K G LKEARR+
Sbjct: 140 GFTLSGIITAC-GIN---VGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRI 195

Query: 188 LNDMPS-KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP 246
            + +   +D V+WNSMV  Y Q+    +AL++  EM    +  D  T+AS+L + TN   
Sbjct: 196 FHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQD 255

Query: 247 -----------------EN-----------------VLSVKEMFLKLDNKNLVSWNVMIA 272
                            +N                 +L  +++F ++ N +LV WN MI+
Sbjct: 256 LLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMIS 315

Query: 273 VYA-NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
            Y+    +  EA++ + Q++  G  P+  S+  V+ AC ++S+   GR++H    +  + 
Sbjct: 316 GYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIP 375

Query: 332 PN-LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
            N + + NAL+ MY+KCG+L +A+T+FD M   + VS+ SMI+ Y   G G+ ++ LF +
Sbjct: 376 SNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQR 435

Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450
           ML     P +I F+SVL+AC+H G +E+G+ YF +M +++ + P   HF+C++DLLGRAG
Sbjct: 436 MLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAG 495

Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSN 510
           K+ EA  LI+ +P +P    W +L+ AC ++ N+++ I AA+ +  L P  +  YV+L+N
Sbjct: 496 KLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLAN 555

Query: 511 IYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           IY+  GR  D   VRK M  +G+KK PG S +E+N ++ I 
Sbjct: 556 IYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIF 596



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 119/488 (24%), Positives = 206/488 (42%), Gaps = 78/488 (15%)

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
           +H F    +++   LK C     L  G  +H   +K  +  + +  N  + +Y KC  L 
Sbjct: 1   MHHFSSLLHSFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLS 60

Query: 183 EARRV-------------------------------LNDMPSKDVVTWNSMVAGYAQNGR 211
            ARRV                                ++MP  D V++N+++A YA+ G 
Sbjct: 61  AARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGD 120

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPS------------------------------V 241
              A  +  EM    +  D  T++ ++ +                              +
Sbjct: 121 TQPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALI 180

Query: 242 TNTSPENVL-SVKEMFLKL-DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
           T+ S    L   + +F  L ++++ VSWN M+  Y  +   ++A++LYL+M V G+  + 
Sbjct: 181 TSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDI 240

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS-LTEARTVFD 358
            ++ASVL A  ++  LL G + H  + +     N  + + L+D+Y+KCG  + + R VFD
Sbjct: 241 FTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFD 300

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYD-AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           ++   D+V W +MIS Y +     D A+  F ++   G  PD  + V V+SACS+     
Sbjct: 301 EISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPS 360

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           +GR    +  +      RI     L+ +  + G + +A  L   MP E N   + S++A 
Sbjct: 361 QGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAG 419

Query: 478 CCLYSNMDIGILAADHIFH------LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531
              Y+   +G  +  H+F         P    +  +L+   A  GR  D K     M  K
Sbjct: 420 ---YAQHGMGFQSL-HLFQRMLEMDFTPTNITFISVLAAC-AHTGRVEDGKIYFNMMKQK 474

Query: 532 -GIKKMPG 538
            GI+   G
Sbjct: 475 FGIEPEAG 482


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 171/549 (31%), Positives = 294/549 (53%), Gaps = 46/549 (8%)

Query: 46  TLKKLHAQIIINQHLH-----SNPSIGLKLMRTYGACGQMVDTRHVFDEIT--NKNVVFF 98
           +L+ L    +I+ H H      +  +   L+  Y  CG +   + +F+ I+  ++++V +
Sbjct: 119 SLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAW 178

Query: 99  NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
           N +I ++  + L+   +H    M   G  P+  T   +L     +N+L  G  IH   ++
Sbjct: 179 NAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIR 238

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
                N+     L+ MY KC  L  AR++ N +  K+ V W++M+ GY  +    +AL +
Sbjct: 239 NFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALAL 298

Query: 219 CREMESLR-IKPDADTMASLLPSVT----------------------NTSPENVLSVKEM 255
             +M  +  + P   T+A++L +                        +T+  N  S+  M
Sbjct: 299 YDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGN--SLISM 356

Query: 256 FLK---LDN----------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
           + K   +DN          K+ VS++ +I+    N    +A+ ++ QM+  GI P   ++
Sbjct: 357 YAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETM 416

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            ++LPAC  L+AL  G   H Y   +    +  + NA++DMY+KCG +T +R +FD+M+ 
Sbjct: 417 IALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQN 476

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           +D++SW +MI  YG+ G   +A++LF ++   GL PD +  ++VLSACSH+GL+ EG+Y+
Sbjct: 477 RDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYW 536

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           F  M++ + + PR+ H+ C+VDLL RAG ++EAY  I++MP  PN RIWG+L+AAC  + 
Sbjct: 537 FSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHK 596

Query: 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-V 541
           N+++G   +  I  L P  +G +VL+SNIY+  GRW D   +R      G KK PG S V
Sbjct: 597 NIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWV 656

Query: 542 EMNDQVQII 550
           E++  + + 
Sbjct: 657 EISGVIHVF 665



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 203/387 (52%), Gaps = 36/387 (9%)

Query: 69  KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
           +L R + +  ++   RHVFD+I   +VV +N++IR+Y  +  +  ++++Y +M   G  P
Sbjct: 46  QLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTP 105

Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
             +T+P +LKACS   +L +G  IH     +GL  +L+    L+ MY KCG L +A+ + 
Sbjct: 106 TNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLF 165

Query: 189 NDMP--SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP 246
           N +    +D+V WN+M+A ++ +    + +    +M+   + P++ T+ S+LP++   + 
Sbjct: 166 NSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANA 225

Query: 247 -----------------ENV----------------LSVKEMFLKLDNKNLVSWNVMIAV 273
                            +NV                   +++F  ++ KN V W+ MI  
Sbjct: 226 LHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGG 285

Query: 274 YANNSMPAEAVDLYLQME-VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
           Y  +   ++A+ LY  M  ++G+ P   ++A++L AC  L+ L  G+K+H ++ +  +  
Sbjct: 286 YVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDL 345

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           +  + N+L+ MYAKCG +  A    D+M  +D VS++++IS    +G    A+ +F +M 
Sbjct: 346 DTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQ 405

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEG 419
            SG+ P     +++L ACSH   L+ G
Sbjct: 406 SSGIAPYLETMIALLPACSHLAALQHG 432



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 13/217 (5%)

Query: 220 REMESLRIKP------DADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273
           R++ S    P      D+D  A+ L    + S   +   + +F ++   ++V WN+MI  
Sbjct: 23  RQIRSFSPHPHPHRVSDSDAAATQLARY-HISRNEIQLARHVFDQIPKPSVVLWNMMIRT 81

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           YA +    +++ LYL M   G+ P   +   +L AC  L AL LGR IH +     L  +
Sbjct: 82  YAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMD 141

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQ--DVVSWTSMISAYGMSGQGYDAVALFSKM 391
           L +  AL+ MYAKCG L +A+T+F+ +  Q  D+V+W +MI+A+         +   ++M
Sbjct: 142 LYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQM 201

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGR----YYFK 424
             +G+ P+S   VS+L     A  L +G+    YY +
Sbjct: 202 QQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIR 238


>gi|147828480|emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
          Length = 841

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 186/549 (33%), Positives = 297/549 (54%), Gaps = 70/549 (12%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLM---RTYGAC-GQMVDTRHVFDEITNKNVVFFN 99
           +K  K++HA I+I+   H  P +  +++     Y A   Q V +  V     + +   + 
Sbjct: 13  VKQAKQVHALILIHGLSHLEPILARQILJSASNYSATVAQYVHS--VLHHSKSPDSFSWA 70

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
             IR    +  + +A  +Y  M   G  P  +     LKAC+     + GL IH  V K 
Sbjct: 71  CAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQVQKF 130

Query: 160 GL----------------------------------DYNLFNGNGLVAMYGKCGCLKEAR 185
           G                                   + N+ + N ++A Y K G L  A+
Sbjct: 131 GFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQ 190

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP------------DADT 233
           RV +++P KDV++WNSM++GYA+ G  ++AL + ++M                   D D+
Sbjct: 191 RVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDS 250

Query: 234 MASL---LPSVTNTSP----------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
             S    +P   N S            +V S  E+F ++  K+L+ +N MIA YA NS P
Sbjct: 251 ARSFFDAMPQXNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRP 310

Query: 281 AEAVDLYLQM---EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
            EA+ L+  M   +V+ ++P+ +++ASV+ AC  L  L  G  I  Y+ R  ++ +  L 
Sbjct: 311 KEALKLFNNMLNPDVN-VQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLA 369

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
            AL+D+YAKCGS+ +A  +F  +R +D+V++T+MI   G++G+  DA+ LF +M+ + + 
Sbjct: 370 TALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIF 429

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
           P+ I F+ +L+A +HAGL+EEG   F  M ++Y LVP ++H+  +VDLLGRAG+++EA +
Sbjct: 430 PNLITFIGLLTAYNHAGLVEEGYRCFTSM-KKYNLVPSVDHYGIMVDLLGRAGRLQEALE 488

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
           LIK MPM+P+  +WG+L+ AC L++N++ G +AA H F L P+ +GY  LLSNIYA   R
Sbjct: 489 LIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYXSLLSNIYASGER 548

Query: 518 WGDVKRVRK 526
           W DVKR+RK
Sbjct: 549 WDDVKRLRK 557


>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
          Length = 674

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 176/530 (33%), Positives = 274/530 (51%), Gaps = 38/530 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K+LHA +I      +  S+  +++  Y  C +  D   +FDE+  KNVV +N LI   V 
Sbjct: 93  KQLHAHVI-KLGXCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVVE 151

Query: 108 NYLYYD----ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
               +       H ++ M +    P+C T   +L+A    N + +  Q+HC ++K G D 
Sbjct: 152 GNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFDS 211

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           N F G+ LV  Y K G + EA+   +++ S+D+V WN MV+ YA NG   +A  V + M 
Sbjct: 212 NCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMR 271

Query: 224 SLRIKPDADTMASLLPSV---------------------------------TNTSPENVL 250
              +K D  T  S++ S                                    +  EN+ 
Sbjct: 272 LEGVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIE 331

Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
             ++ F  +  KN+VSW  M   Y  +    E + L  +M      P+ +++AS+L +CG
Sbjct: 332 DARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTYPDELALASILSSCG 391

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
           +LSA     ++H YV     +  L + NALV  Y+KCGS+  A   F  +   D++SWTS
Sbjct: 392 NLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISWTS 451

Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
           ++ AY   G     V +F K+L S + PD +AF+ VLSAC+H G + EG +YF +M   Y
Sbjct: 452 LMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMINVY 511

Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
           +++P  EH+  ++DLLGRAG ++EA +L+  MP+EP     G+ + AC +Y N+ +   A
Sbjct: 512 QIMPDSEHYTSIIDLLGRAGFLDEAVNLLTSMPVEPRSDTLGAFLGACKVYRNVGLARWA 571

Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           ++ +F + PN+ G Y L+SN+YA  G W DV RVRK M  +   K+PG S
Sbjct: 572 SEKLFVMEPNEPGKYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCS 621



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 189/404 (46%), Gaps = 49/404 (12%)

Query: 149 GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
           G Q+H  V+K+G    L   N ++ +Y KC    +  ++ ++MP K+VV+WN+++ G  +
Sbjct: 92  GKQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVVE 151

Query: 209 ------------------------------NGRFDEALD-----VCREMESLRIKPDADT 233
                                         NG    +++     +CR++    +K   D+
Sbjct: 152 GNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFDS 211

Query: 234 MASLLPSVTNTSPENVL--SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
              +  ++ ++  +  L    +  F ++ +++LV WNVM++ YA N +  +A  ++  M 
Sbjct: 212 NCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMR 271

Query: 292 VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351
           + G++ +  +  S++ +CG L +  LG+++H  + R     ++ + +ALVDMY+K  ++ 
Sbjct: 272 LEGVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIE 331

Query: 352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
           +AR  FD M  +++VSWT+M   YG  G G + + L  +M+     PD +A  S+LS+C 
Sbjct: 332 DARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTYPDELALASILSSCG 391

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFA----CLVDLLGRAGKVEEAYDLIKQMPMEPN 467
           +     E      +    Y +    E F      LV    + G +  A+     +  EP+
Sbjct: 392 NLSATSE-----VVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVA-EPD 445

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIF--HLAPNQSGYYVLLS 509
              W SL+ A   +     G+   + I   ++ P++  +  +LS
Sbjct: 446 IISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLS 489


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 172/547 (31%), Positives = 300/547 (54%), Gaps = 42/547 (7%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           K   ++  ++LH  +II     ++  +   L++ Y  CG + D + VF+ +  K++  ++
Sbjct: 42  KLQALEEGRRLHEHLIITG-FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWS 100

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            +I +Y        A+ +Y+ M   G +P+  T+ C L  C+    L  G  IH  ++  
Sbjct: 101 SIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILAS 160

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
            +  +    + L+ MY KC  + EAR+V   M +++V ++ +M++ Y Q G   EAL++ 
Sbjct: 161 KVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELF 220

Query: 220 REMESLR-IKPDADTMASLLPSV----------------------TNTSPENVL------ 250
             M  +  I+P+A T A++L +V                      TN   +N L      
Sbjct: 221 SRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGK 280

Query: 251 -----SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                  +++F  +  +N++SW  MIA YA +  P EA++L+ +M+V   EP+ +S +S 
Sbjct: 281 CGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMDV---EPSGVSFSSA 337

Query: 306 LPACGDLSALLLGRKIH-RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           L AC  L AL  GR+IH R VE     P +  E +L+ MYA+CGSL +AR VF++M+ +D
Sbjct: 338 LNACALLGALDEGREIHHRVVEANLASPQM--ETSLLSMYARCGSLDDARRVFNRMKTRD 395

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
             S  +MI+A+   G+   A+ ++ KM   G+  D I FVSVL ACSH  L+ + R + +
Sbjct: 396 AFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFVSVLVACSHTSLVADCRDFLQ 455

Query: 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNM 484
            +   + +VP +EH+ C+VD+LGR+G++ +A +L++ MP + +   W +L++ C  + ++
Sbjct: 456 SLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQADAVAWMTLLSGCKRHGDL 515

Query: 485 DIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEM 543
           D G  AA  +F LAP ++  YV LSN+YA A R+ D +RVRK M  +G+ +    S +E+
Sbjct: 516 DRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTRPVAVSYIEI 575

Query: 544 NDQVQII 550
           ++++ + 
Sbjct: 576 DNELHMF 582



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 122/383 (31%), Positives = 198/383 (51%), Gaps = 39/383 (10%)

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           AL ++  M   G   D +    ++ AC+   +L  G ++H  ++  G   ++     L+ 
Sbjct: 14  ALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQ 73

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MY KCG L +A+RV   M  KD+  W+S++A YA+ GR + A+ + R M +  ++P+  T
Sbjct: 74  MYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVT 133

Query: 234 MASLLPSVTNTS------------------PENVL--SVKEMFLKLDN------------ 261
            A  L    + +                   ++VL  S+  M+LK D             
Sbjct: 134 FACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMK 193

Query: 262 -KNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGR 319
            +N+ S+  MI+ Y      AEA++L+ +M +V  IEPNA + A++L A   L  L  GR
Sbjct: 194 ARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGR 253

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
           K+HR++  +    N+ ++NALV MY KCGS  EAR VFD M  ++V+SWTSMI+AY   G
Sbjct: 254 KVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHG 313

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
              +A+ LF +M +    P  ++F S L+AC+  G L+EGR     + E     P++E  
Sbjct: 314 NPQEALNLFKRMDVE---PSGVSFSSALNACALLGALDEGREIHHRVVEANLASPQME-- 368

Query: 440 ACLVDLLGRAGKVEEAYDLIKQM 462
             L+ +  R G +++A  +  +M
Sbjct: 369 TSLLSMYARCGSLDDARRVFNRM 391



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 143/302 (47%), Gaps = 41/302 (13%)

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           MIA       P +A++L+ +ME  GI  +   V S++ AC  L AL  GR++H ++    
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
            + ++ LE AL+ MYAKCGSL +A+ VF+ M  +D+ +W+S+I+AY  +G+G  AV L+ 
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGR-----------------------YYFKI- 425
           +M+  G+ P+ + F   L  C+    L +GR                        Y K  
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCD 180

Query: 426 -MTEQYKLVP-----RIEHFACLVDLLGRAGKVEEAYDLIKQM----PMEPNERIWGSLV 475
            M E  K+        +  +  ++    +AG+  EA +L  +M     +EPN   + +++
Sbjct: 181 EMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATIL 240

Query: 476 AACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSN----IYAKAGRWGDVKRVRKFMNSK 531
            A     N++ G        HLA       V++ N    +Y K G   + ++V   M ++
Sbjct: 241 GAVEGLGNLEKGRKVHR---HLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTAR 297

Query: 532 GI 533
            +
Sbjct: 298 NV 299


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 165/448 (36%), Positives = 252/448 (56%), Gaps = 35/448 (7%)

Query: 128 PDCYT-YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR 186
           P+ Y  Y  VL++C  S SL  G Q+H  ++  GL  +      LV +Y  CG +  ARR
Sbjct: 59  PNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARR 118

Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT--------MASLL 238
           + + MP ++V  WN ++  YA++G  + A+ + R M    ++PD  T         A L 
Sbjct: 119 LFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLD 178

Query: 239 PSVTNTSPENVLSV-------------------------KEMFLKLDNKNLVSWNVMIAV 273
                   E VL                           + +F ++  ++ V WN MIA 
Sbjct: 179 LETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAA 238

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           Y  N  P EA+ L   M  +G+ P   ++ S + A  D +AL  GR++H +  R+     
Sbjct: 239 YGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQ 298

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
            +L+ +LVDMYAK G +  AR +F+Q+  +++VSW +MI  YGM G   +A+ LF+KM +
Sbjct: 299 DKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRV 358

Query: 394 SG-LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
              + PD+I FV VLSAC+H G+++E + +F +M + Y + P ++HF CLVD+LG AG+ 
Sbjct: 359 EAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRF 418

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
           EEAYDLIK MPM+P+  IWG+L+  C ++ N+++G LA   +  L P  +G YVLLSNIY
Sbjct: 419 EEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIY 478

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           A++G+W    RVRK M ++G+KK+ G S
Sbjct: 479 AQSGKWEKAARVRKLMTNRGLKKIIGCS 506



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 180/370 (48%), Gaps = 43/370 (11%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
           + T ++LH +++++  L  +  +  KL+  Y ACG +   R +FD +  +NV  +NVLIR
Sbjct: 78  LGTGRQLHGRLLVSG-LGPDTVLATKLVDLYAACGLVGHARRLFDGMPKRNVFLWNVLIR 136

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           +Y  +  +  A+ +Y+ M  +G +PD +TYP  LKAC+    L  G ++H  V+      
Sbjct: 137 AYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGREVHERVLGTHWGE 196

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           ++F   GLV MY KCGC+ +AR V + +  +D V WNSM+A Y QNGR  EAL +CR+M 
Sbjct: 197 DMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMA 256

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLS-------------------------------- 251
           +  + P   T+A+L+ +++  +    L                                 
Sbjct: 257 ANGVGP---TIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSG 313

Query: 252 ----VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAISVASVL 306
                + +F +L  + LVSWN MI  Y  +    EA+ L+ +M V   + P+ I+   VL
Sbjct: 314 WVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVL 373

Query: 307 PACGDLSALLLGRKIHRY-VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-D 364
            AC     +   ++     V+   ++P ++    LVD+    G   EA  +   M  Q D
Sbjct: 374 SACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPD 433

Query: 365 VVSWTSMISA 374
              W ++++ 
Sbjct: 434 SGIWGALLNG 443



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 149/327 (45%), Gaps = 31/327 (9%)

Query: 45  KTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
           +T +++H +++   H   +  +   L+  Y  CG + D R VFD I  ++ V +N +I +
Sbjct: 180 ETGREVHERVL-GTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAA 238

Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
           Y  N    +AL + ++M+ +G  P   T    + A + + +L  G ++H    + G D  
Sbjct: 239 YGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQ 298

Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME- 223
                 LV MY K G ++ AR +   +  +++V+WN+M+ GY  +G FDEAL +  +M  
Sbjct: 299 DKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRV 358

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMF-LKLD----NKNLVSWNVMIAVYANNS 278
             ++ PD  T   +L +  +     V   KE F L +D       +  +  ++ V  +  
Sbjct: 359 EAQVTPDNITFVGVLSACNHGG--MVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAG 416

Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK--LQPNLRL 336
              EA DL   M +              P  G   ALL G KIH+ VE  +  LQ  + L
Sbjct: 417 RFEEAYDLIKGMPMQ-------------PDSGIWGALLNGCKIHKNVELGELALQKLIEL 463

Query: 337 ENA-------LVDMYAKCGSLTEARTV 356
           E         L ++YA+ G   +A  V
Sbjct: 464 EPEDAGNYVLLSNIYAQSGKWEKAARV 490


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 171/517 (33%), Positives = 286/517 (55%), Gaps = 46/517 (8%)

Query: 37  ILDKYPDIKTLKKLHAQIII-NQHLHSN-PSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
            +D    +  + ++HA I+  N  +H   P + LKL R Y + G++  +  +F +  + +
Sbjct: 33  FIDNSHSVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPD 92

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
           +  F   I +   N L   A  +Y  +     +P+ +T+  +LK+CS  +  L    IH 
Sbjct: 93  LFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTKSGKL----IHT 148

Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
            V+K GL  + +   GLV +Y K G +  A++V + MP + +V+  +M+  YA+ G    
Sbjct: 149 HVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQG---- 204

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
                                            NV + + +F ++  +++VSWNVMI  Y
Sbjct: 205 ---------------------------------NVEAARALFDRMCERDIVSWNVMIDGY 231

Query: 275 ANNSMPAEAVDLYLQMEVHGI-EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
           + +  P++A+ L+ ++   G  +P+ I+V + L AC  + AL  GR IH +V   +++ N
Sbjct: 232 SQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLN 291

Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML- 392
           +++  AL+DMY+KCGSL EA  VF+    +D+V+W +MI+ Y M G   DA+ LF +M  
Sbjct: 292 VKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQG 351

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
           ++GL P  I F+  L AC+HAGL+ EG   F+ M ++Y + P+IEH+ CLV LLGRAG++
Sbjct: 352 ITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQL 411

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
           + AY++IK M ME +  +W S++ +C L+    +G   A+++     + SG YVLLSNIY
Sbjct: 412 KRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIY 471

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
           A  G +  V +VR  M  KGI K PG +++E++++V 
Sbjct: 472 ALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVH 508


>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g37570
 gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 550

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 157/483 (32%), Positives = 264/483 (54%), Gaps = 29/483 (6%)

Query: 86  VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF-DPDCYTYPCVLKACSGSN 144
           VF+ + +     +N LI+ Y N +L+++ + +   M   G   PD YT+P V+K CS + 
Sbjct: 65  VFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNG 124

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
            + VG  +H  V+++G D ++  G   V  YGKC  L  AR+V  +MP ++ V+W ++V 
Sbjct: 125 QVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVV 184

Query: 205 GYAQNGRFDEALDVCREMESLRIKP---------------DADTMASLLPS---VTNTS- 245
            Y ++G  +EA  +   M    +                 +A  +   +P    ++ TS 
Sbjct: 185 AYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSM 244

Query: 246 ------PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                   +++S +++F +    ++ +W+ +I  YA N  P EA  ++ +M    ++P+ 
Sbjct: 245 IDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDE 304

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVERK--KLQPNLRLENALVDMYAKCGSLTEARTVF 357
             +  ++ AC  +    L  K+  Y+ ++  K   +  +  AL+DM AKCG +  A  +F
Sbjct: 305 FIMVGLMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVP-ALIDMNAKCGHMDRAAKLF 363

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           ++M  +D+VS+ SM+    + G G +A+ LF KM+  G+ PD +AF  +L  C  + L+E
Sbjct: 364 EEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVE 423

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           EG  YF++M ++Y ++   +H++C+V+LL R GK++EAY+LIK MP E +   WGSL+  
Sbjct: 424 EGLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGG 483

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
           C L+ N +I  + A H+F L P  +G YVLLSNIYA   RW DV  +R  MN  GI K+ 
Sbjct: 484 CSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKIC 543

Query: 538 GAS 540
           G S
Sbjct: 544 GRS 546



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 10/170 (5%)

Query: 77  CGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCV 136
           CG M     +F+E+  +++V +  ++     +    +A+ +++ M   G  PD   +  +
Sbjct: 353 CGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVI 412

Query: 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG----NGLVAMYGKCGCLKEARRVLNDMP 192
           LK C  S  +  GL+    + K    Y++       + +V +  + G LKEA  ++  MP
Sbjct: 413 LKVCGQSRLVEEGLRYFELMRK---KYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMP 469

Query: 193 -SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSV 241
                  W S++ G + +G  + A  V R +    ++P +     LL ++
Sbjct: 470 FEAHASAWGSLLGGCSLHGNTEIAEVVARHL--FELEPQSAGSYVLLSNI 517


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/390 (40%), Positives = 233/390 (59%), Gaps = 36/390 (9%)

Query: 195 DVVTWNSMVAGYAQNGRFDEALDVCREME-SLRIKPDADTMASLLPSVTNTSP------- 246
           +V  WN+++ GYA+ G    A  + REM  S  ++PD  T   L+ +VT  +        
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143

Query: 247 --------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                                      +V S  ++F K+  K+LV+WN +I  +A N  P
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            EA+ LY +M   GI+P+  ++ S+L AC  + AL LG+++H Y+ +  L  NL   N L
Sbjct: 204 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVL 263

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS-GLCPD 399
           +D+YA+CG + EA+T+FD+M  ++ VSWTS+I    ++G G +A+ LF  M  + GL P 
Sbjct: 264 LDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPC 323

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
            I FV +L ACSH G+++EG  YF+ M E+YK+ PRIEHF C+VDLL RAG+V++AY+ I
Sbjct: 324 EITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYI 383

Query: 460 KQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519
           K MPM+PN  IW +L+ AC ++ + D+   A   I  L PN SG YVLLSN+YA   RW 
Sbjct: 384 KSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWS 443

Query: 520 DVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           DV+++RK M   G+KK+PG S VE+ ++V 
Sbjct: 444 DVQKIRKQMLRDGVKKVPGHSLVEVGNRVH 473



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 192/411 (46%), Gaps = 45/411 (10%)

Query: 32  DACNDILDKY--PDIKTLKKLHAQIIINQHLHSNPSIGLKL---MRTYGACGQMVDTRHV 86
           + C ++L  Y    I  L+++HA  I +    S+  +G  L   + +  +   M     V
Sbjct: 16  EKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKV 75

Query: 87  FDEITNK-NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF-DPDCYTYPCVLKACSGSN 144
           F +I    NV  +N LIR Y        A  +Y+ M V G  +PD +TYP ++KA +   
Sbjct: 76  FSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMA 135

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
            + +G  IH  V++ G    ++  N L+ +Y  CG +  A +V + MP KD+V WNS++ 
Sbjct: 136 DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVIN 195

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS----------------------VT 242
           G+A+NG+ +EAL +  EM S  IKPD  T+ SLL +                        
Sbjct: 196 GFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTR 255

Query: 243 NTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
           N    NVL             K +F ++ +KN VSW  +I   A N    EA++L+  ME
Sbjct: 256 NLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYME 315

Query: 292 -VHGIEPNAISVASVLPACGDLSALLLGRK-IHRYVERKKLQPNLRLENALVDMYAKCGS 349
              G+ P  I+   +L AC     +  G +   R  E  K++P +     +VD+ A+ G 
Sbjct: 316 STEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQ 375

Query: 350 LTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           + +A      M  Q +VV W +++ A  + G     +A F+++ +  L P+
Sbjct: 376 VKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDS--DLAEFARIQILQLEPN 424



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 4/233 (1%)

Query: 245 SPENVLSVKEMFLKLDNK-NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAISV 302
           SP  +    ++F K++   N+  WN +I  YA       A  LY +M V G +EP+  + 
Sbjct: 65  SPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTY 124

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
             ++ A   ++ + LG  IH  V R      + ++N+L+ +YA CG +  A  VFD+M  
Sbjct: 125 PFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPE 184

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           +D+V+W S+I+ +  +G+  +A+AL+++M   G+ PD    VS+LSAC+  G L  G+  
Sbjct: 185 KDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRV 244

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
              M  +  L   +     L+DL  R G+VEEA  L  +M ++ N   W SL+
Sbjct: 245 HVYMI-KVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 295


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 174/488 (35%), Positives = 261/488 (53%), Gaps = 44/488 (9%)

Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLV--GLQIHCSVVKVGL 161
           ++ +N  + +AL  ++ M   G  PD  T+  +L A +   +  +  G +IH      GL
Sbjct: 3   AFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGL 62

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
             N+  G  +++MYGKCG L +AR    ++  K+ VTWN+M+  Y  +GR  EAL++ RE
Sbjct: 63  LPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFRE 122

Query: 222 M--ESLRIKPDADTMASLLPSVTNTSP-ENVLSVKEMFLKLDNKNL-------------- 264
           M   S   +PD  + +  + + +N    E    + EM L+ + K L              
Sbjct: 123 MCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEM-LRREGKELHKDVVVGTALLNMY 181

Query: 265 ----------------------VSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAIS 301
                                 V WN MIA YA +    +A+DLY  M +   + P   +
Sbjct: 182 SKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGT 241

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
             +V+  C +LSAL  GR IH  V       NL + NALV MY KCG L EA  VF  M+
Sbjct: 242 FVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMK 301

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            +D +SW ++IS+Y   G    A+ L+ +M + G+ P  + FV +LSACSH GL+ +G  
Sbjct: 302 LKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLD 361

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
           YF  M + +++ P + HF C++DLLGR G++ EA  ++K MP++ N   W SL+ AC  +
Sbjct: 362 YFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTH 421

Query: 482 SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS- 540
            ++  G+ AAD +    P  SG YVLLSNIYA AGRW DV+++RK M ++G+KK PG S 
Sbjct: 422 GDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSW 481

Query: 541 VEMNDQVQ 548
           +E+ D V 
Sbjct: 482 IEIGDVVH 489



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 173/354 (48%), Gaps = 43/354 (12%)

Query: 63  NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM- 121
           N  +G  ++  YG CG++ D R  F+E+  KN V +N ++ +Y  +    +AL +++ M 
Sbjct: 65  NVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMC 124

Query: 122 -SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG--LDYNLFNGNGLVAMYGKC 178
                  PD +++   ++ACS    L  G +IH  + + G  L  ++  G  L+ MY KC
Sbjct: 125 ERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKC 184

Query: 179 GCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESLRIKPDADTMAS 236
           G L+EAR+V + +    D V WN+M+A YAQ+GR  +ALD+ R M ++  + P   T  +
Sbjct: 185 GDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVT 244

Query: 237 LLP------------------SVTNTSPENVLS---------------VKEMFLKLDNKN 263
           ++                     TN     ++S                 ++F  +  K+
Sbjct: 245 VIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKD 304

Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC--GDLSALLLGRKI 321
            +SWN +I+ YA +    +A+ LY +M++ G++P  ++   +L AC  G L A  L    
Sbjct: 305 EISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLD-YF 363

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
           +R  +  +++P++     ++D+  + G L EA  V   M  Q + V W S++ A
Sbjct: 364 YRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGA 417



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 146/292 (50%), Gaps = 20/292 (6%)

Query: 32  DACNDILDKYPDIKTLKKLHAQIIIN-QHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI 90
           +AC+++     D++  +++H  +    + LH +  +G  L+  Y  CG + + R VFD I
Sbjct: 142 EACSNL----EDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSI 197

Query: 91  T-NKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLV 148
             + + V +N +I +Y  +     AL +Y++M       P   T+  V+  C+  ++L  
Sbjct: 198 RHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQ 257

Query: 149 GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
           G  IH  V     D NL   N LV MYGKCGCL EA  V + M  KD ++WN++++ YA 
Sbjct: 258 GRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAY 317

Query: 209 NGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWN 268
           +G  D+AL + +EM+   +KP   T   LL + ++     V    + F ++ + + +  +
Sbjct: 318 HGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGL--VADGLDYFYRMQDDHRIKPS 375

Query: 269 V-----MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC---GDL 312
           V     +I +       AEA    L ++   I+ NA+   S+L AC   GDL
Sbjct: 376 VPHFGCIIDLLGRGGRLAEA---ELVLKSMPIQANAVQWMSLLGACKTHGDL 424



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 132/255 (51%), Gaps = 15/255 (5%)

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLL--GRKIHRYVERK 328
           +A +++N   +EA+  + +M   G  P+ ++ + +L A   + A  +  GR+IHRY    
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
            L PN+ +  A++ MY KCG L +AR  F++++ ++ V+W +M++ Y + G+  +A+ LF
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 389 SKMLMSGLC--PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK-LVPRIEHFACLVDL 445
            +M        PD  +F   + ACS+   LE+GR   +++  + K L   +     L+++
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAAD------HIFHLAP 499
             + G +EEA  +   +  + +   W +++AA   Y+    G  A D          LAP
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAA---YAQHGRGKQALDLYRSMHDTTDLAP 237

Query: 500 NQSGYYVLLSNIYAK 514
            Q G +V + ++ A+
Sbjct: 238 KQ-GTFVTVIDVCAE 251


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/457 (36%), Positives = 255/457 (55%), Gaps = 35/457 (7%)

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           P    Y   + AC+ S +L    ++H  +       + F  N L+ +Y KCG + EAR+V
Sbjct: 49  PTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKV 108

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPE 247
            ++M  KD+V+W S++AGYAQN   +EA+ +   M   R KP+  T ASLL +    +  
Sbjct: 109 FDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADS 168

Query: 248 NV------LSVK---------------------------EMFLKLDNKNLVSWNVMIAVY 274
            +      L+VK                            +F KLD+KN VSWN +I+ +
Sbjct: 169 GIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           A       A+  + +M  +G E    + +SV  +   L AL  G+ +H ++ + + +   
Sbjct: 229 ARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTA 288

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
              N L+DMYAK GS+ +AR VFD++  +D+V+W +M++A+   G G +AV+ F +M  S
Sbjct: 289 FAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKS 348

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
           G+  + + F+ +L+ACSH GL++EG+ YF++M E Y L P I+HF  +V LLGRAG +  
Sbjct: 349 GIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKE-YDLEPEIDHFVTVVALLGRAGLLNF 407

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A   I +MP+EP   +WG+L+AAC ++ N  +G  AADH+F L P+ SG  VLL NIYA 
Sbjct: 408 ALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYAS 467

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
            G+W    RVR+ M + G+KK P  S VEM + V + 
Sbjct: 468 TGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMF 504



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 170/366 (46%), Gaps = 35/366 (9%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           +++  +K+HA +  +     +  +   L+  Y  CG +++ R VFDE+  K++V +  LI
Sbjct: 66  NLEDARKVHAHLA-SSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLI 124

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             Y  N +  +A+ +   M    F P+ +T+  +LKA        +G QIH   VK    
Sbjct: 125 AGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWH 184

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            +++ G+ L+ MY +CG +  A  V + + SK+ V+WN++++G+A+ G  + AL    EM
Sbjct: 185 EDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEM 244

Query: 223 ESLRIKPDADTMASLLPSVT---------------------------NT------SPENV 249
                +    T +S+  S+                            NT         ++
Sbjct: 245 LRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSM 304

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
           +  +++F ++D+K+LV+WN M+  +A   +  EAV  + +M   GI  N ++   +L AC
Sbjct: 305 IDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTAC 364

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS-W 368
                +  G++    ++   L+P +     +V +  + G L  A     +M  +   + W
Sbjct: 365 SHGGLVKEGKRYFEMMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVW 424

Query: 369 TSMISA 374
            ++++A
Sbjct: 425 GALLAA 430


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 168/506 (33%), Positives = 276/506 (54%), Gaps = 41/506 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           KK+HAQI+    L+    +   L+  YG C  + D  ++FDE+  ++ V +  ++ +Y  
Sbjct: 22  KKIHAQIV-KSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQ 80

Query: 108 NYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
             L    L ++  M +     PD + Y  +LKAC+   SL +G Q+H   V      +  
Sbjct: 81  AKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDV 140

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
             + LV MY KCG    AR V + +  K  V+W +M++GYA++G  DEA+          
Sbjct: 141 VKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAM---------- 190

Query: 227 IKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
                                      E+FL+   +NL SW  +I+    +    +   +
Sbjct: 191 ---------------------------ELFLRTPVRNLYSWTALISGLVQSGYCIDGCYM 223

Query: 287 YLQMEVHGIE-PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345
           +++M   G++  + + ++SV+ AC +L+ L LG++IH  V     +  L + NALVDMYA
Sbjct: 224 FIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYA 283

Query: 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS 405
           KC  +  AR VF++M  +DVVSWTS+I      G+  +A+ L+ +M+++ + P+ + FV 
Sbjct: 284 KCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVG 343

Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME 465
           ++ ACSHAGL+ +GR  FK M E Y++ P ++ F C +DLL R+G + EA DLIK MP +
Sbjct: 344 LIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHK 403

Query: 466 PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVR 525
           P+E  W +L++AC  + N ++G+  AD +  L  ++   YVLLSN+YA AG+W  + RVR
Sbjct: 404 PDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVR 463

Query: 526 KFMNSKGIKKMPG-ASVEMNDQVQII 550
           K M    +K+ PG +S+++  + Q+ 
Sbjct: 464 KLMTDMEVKRKPGYSSIDLGKESQVF 489



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 8/149 (5%)

Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
           L  C    A L  +KIH  + +  L     L N L+D Y KC  L +A  +FD+M  +D 
Sbjct: 9   LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDH 68

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSG-LCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
           VSW S+++AY  +      +++F  M  +  L PD   + ++L AC+    L  G    K
Sbjct: 69  VSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLG----K 124

Query: 425 IMTEQYKLVPRIEH---FACLVDLLGRAG 450
            +  ++ L P ++     + LVD+  + G
Sbjct: 125 QVHARFVLSPFVDDDVVKSSLVDMYAKCG 153


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 175/550 (31%), Positives = 298/550 (54%), Gaps = 39/550 (7%)

Query: 37  ILDKYPDIKTLK---KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
           IL+     ++LK   ++H QI+  Q    +  +G  L+  Y  CG +      F  + ++
Sbjct: 112 ILNACASTESLKDGMEIHGQIL-QQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR 170

Query: 94  NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
           +VV +  +I + V +  +  A  +Y+ M + G  P+  T   V  A    + L  G  I+
Sbjct: 171 DVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIY 230

Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
             V    ++ ++   N  + M+G  G L +ARR+  DM  +DVVTWN ++  Y QN  F 
Sbjct: 231 SLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFG 290

Query: 214 EALDVCREMESLRIKPDADT---MASLLPSVTNTSPENVLS--VKE-------------- 254
           EA+ +   ++   IK +  T   M ++  S+T+ +   V+   VKE              
Sbjct: 291 EAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALM 350

Query: 255 --------------MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                         +F+ + +K++++W VM   YA N    EA+ L+ +M++ G  P + 
Sbjct: 351 SLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSA 410

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           ++ +VL  C  L+AL  GR+IH ++     +  + +E AL++MY KCG + EAR+VF++M
Sbjct: 411 TLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKM 470

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             +D++ W SM+ AY   G   + + LF++M + G   D+++FVSVLSA SH+G + +G 
Sbjct: 471 AKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGY 530

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP-MEPNERIWGSLVAACC 479
            YF  M + + + P  E + C+VDLLGRAG+++EA D++ ++    P+  +W +L+ AC 
Sbjct: 531 QYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACR 590

Query: 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG- 538
            ++  D    AA+ +    P+ SG YV+LSN+YA AG W  V R+RK M S+G+KK PG 
Sbjct: 591 THNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGR 650

Query: 539 ASVEMNDQVQ 548
           +S+E+ ++V 
Sbjct: 651 SSIEILNRVH 660



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/464 (25%), Positives = 228/464 (49%), Gaps = 38/464 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +++H  +  ++    N  +   L++ Y  CG + + + VF+ +  K+V  +  +I  Y  
Sbjct: 25  RRVHWHVC-DRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQ 83

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
              Y  AL ++  M      P   TY  +L AC+ + SL  G++IH  +++ G + ++F 
Sbjct: 84  QGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFV 143

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           G  L+ MY KCG ++ A      +  +DVV+W +M+A   Q+ +F  A  + R M+   +
Sbjct: 144 GTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGV 203

Query: 228 KPDADTM-------------------ASLLPSVTNTSPENVLS--------------VKE 254
            P+  T+                    SL+ S    S   V++               + 
Sbjct: 204 VPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARR 263

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314
           +F  + ++++V+WN++I  Y  N    EAV L+ +++  GI+ N I+   +L     L++
Sbjct: 264 LFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTS 323

Query: 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISA 374
           L  G+ IH  V+      ++ +  AL+ +Y +C +  +A  +F  M  +DV++WT M  A
Sbjct: 324 LAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVA 383

Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY-YFKIMTEQYKLV 433
           Y  +G   +A+ LF +M + G  P S   V+VL  C+H   L++GR  +  I+   +++ 
Sbjct: 384 YAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRME 443

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             +E    L+++ G+ GK+ EA  + ++M  + +  +W S++ A
Sbjct: 444 MVVE--TALINMYGKCGKMAEARSVFEKMA-KRDILVWNSMLGA 484



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/480 (23%), Positives = 209/480 (43%), Gaps = 77/480 (16%)

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
           F PD   +  +L+ CS + ++  G ++H  V   G + N      L+ MY +CG + EA+
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           +V   +  KDV  W  M+  Y Q G +D AL +  +M+   + P   T  ++L +  +T 
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 246 P---------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIA 272
                                              +V    + F +L+++++VSW  MIA
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 180

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
               +   A A  LY +M++ G+ PN I++ +V  A GD   L  G+ I+  V  + ++ 
Sbjct: 181 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMES 240

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           ++R+ N+ ++M+   G L +AR +F+ M  +DVV+W  +I+ Y  +    +AV LF ++ 
Sbjct: 241 DVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQ 300

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ------------YKLVPRIE--- 437
             G+  + I FV +L+  +    L +G+   +++ E               L  R E   
Sbjct: 301 QDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPG 360

Query: 438 -HFACLVDL--------------LGRAGKVEEAYDLIKQMPMEPNERIWGSLVA---ACC 479
             +   VD+                + G  +EA  L ++M +E       +LVA    C 
Sbjct: 361 QAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCA 420

Query: 480 LYSNMDIGILAADHIFHLAPNQSGYYV------LLSNIYAKAGRWGDVKRVRKFMNSKGI 533
             + +  G     HI      ++G+ +       L N+Y K G+  + + V + M  + I
Sbjct: 421 HLAALQKGRQIHSHII-----ENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDI 475


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 162/517 (31%), Positives = 285/517 (55%), Gaps = 36/517 (6%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  YG CG++     VFD +  +NVV +  L+  ++ N    ++L ++  M + G  P+
Sbjct: 13  LIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPN 72

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +T+   LKAC   N L +G QIH   VK G D     GN ++ MY KCG + EA  +  
Sbjct: 73  DFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFE 132

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT------- 242
            MP +++++WN+M+AGY   G  ++AL + ++M+ +    D  T  S L + +       
Sbjct: 133 VMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKE 192

Query: 243 -----------------NTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVY 274
                            NT+    L             + +F  ++ K+++SW  +I  Y
Sbjct: 193 GNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGY 252

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           A     AE+++L+ Q+    I+ +   ++S++    D + +  G+++H +  +     ++
Sbjct: 253 AQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDI 312

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            + N+++DMY KCG + EA  +F +M  ++V+SWT MI+ YG  G G +A+ LF +M + 
Sbjct: 313 SVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLD 372

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
              PD + +++VL  CSH+GL+E+G+ YF  +   + +  R+EH+AC+VDLLGRAG+++E
Sbjct: 373 STEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKE 432

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A +L+  MP+E N  IW +L++AC ++ ++++G      +  L       YV++SNIYA 
Sbjct: 433 AKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNYVMMSNIYAD 492

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           AG W + +R+R+ + SK +KK  G S VE++ +V   
Sbjct: 493 AGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFF 529



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/418 (24%), Positives = 193/418 (46%), Gaps = 55/418 (13%)

Query: 6   LLCRHFSTTKPVQALVLSTQYTLLSGDACNDI----------LDKYPDIKTLKKLHAQII 55
           L+C H     P+++L+L ++  L SG   ND           L    DI   +++H  I 
Sbjct: 44  LMCGHIQNGNPLESLLLFSKMGL-SGVKPNDFTFSTNLKACGLLNGLDIG--RQIH-DIC 99

Query: 56  INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDAL 115
           +         +G  ++  Y  CG++ +   +F+ +  +N++ +N +I  Y        AL
Sbjct: 100 VKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKAL 159

Query: 116 HVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY--NLFNGNGLVA 173
            +++ M   G   D +T+   LKACS   ++  G QIH  ++  G  Y  N      L+ 
Sbjct: 160 VLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALID 219

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           +Y KCG L  ARRV + +  K V++W +++ GYAQ G   E++++ R++    I+ D   
Sbjct: 220 LYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFI 279

Query: 234 MASLL----------------------PSVTNTSPENVLSVKEMFLK------------- 258
           ++S++                      PS  + S  N  S+ +M+LK             
Sbjct: 280 LSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCN--SILDMYLKCGMINEAERLFSE 337

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +  +N++SW VMI  Y  + +  EA+ L+ +M++   EP+ ++  +VL  C     +  G
Sbjct: 338 MPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKG 397

Query: 319 RK-IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISA 374
           ++   R      ++  +     +VD+  + G L EA+ + D M  + +V  W +++SA
Sbjct: 398 QEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSA 455



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 162/342 (47%), Gaps = 40/342 (11%)

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
           +G  ++L   N L+ MYGKCG L  A  V + M  ++VV+W +++ G+ QNG   E+L +
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 219 CREMESLRIKPDADTMASLLPSV------------------TNTSPENVL--SVKEMFLK 258
             +M    +KP+  T ++ L +                   T     NV+  S+ +M+ K
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSK 120

Query: 259 LDN-------------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                           +NL+SWN MIA Y       +A+ L+ +M+  G   +  +  S 
Sbjct: 121 CGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTST 180

Query: 306 LPACGDLSALLLGRKIHRYVERKKL--QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           L AC DL A+  G +IH ++         N  +  AL+D+Y KCG L  AR VF  +  +
Sbjct: 181 LKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEK 240

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
            V+SWT++I  Y   G   +++ LF ++  S +  D     S++   +   L+++G+   
Sbjct: 241 HVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGK--- 297

Query: 424 KIMTEQYKLVPRIEHFAC--LVDLLGRAGKVEEAYDLIKQMP 463
           ++     K+   ++   C  ++D+  + G + EA  L  +MP
Sbjct: 298 QMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMP 339



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 7/152 (4%)

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           +L L N L+ MY KCG L  A  VFD+M  ++VVSWT+++  +  +G   +++ LFSKM 
Sbjct: 6   DLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMG 65

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ-YKLVPRIEHFACLVDLLGRAGK 451
           +SG+ P+   F + L AC     L+ GR    I  +  + +V  + +   ++D+  + G+
Sbjct: 66  LSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGN--SIIDMYSKCGR 123

Query: 452 VEEAYDLIKQMPMEP----NERIWGSLVAACC 479
           + EA  + + MP+      N  I G  VA  C
Sbjct: 124 INEAACMFEVMPVRNLISWNAMIAGYTVAGFC 155


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 174/560 (31%), Positives = 301/560 (53%), Gaps = 42/560 (7%)

Query: 27  TLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHV 86
           TLLSG        ++  +  ++++H+ +I      S   +   L+ +Y     +     +
Sbjct: 203 TLLSG------FTEFDSVNEVRQVHSHVI-KLGYDSTLVVSNSLLDSYCKTRSLGLAFQL 255

Query: 87  FDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL 146
           F++I  ++ V FN L+  Y       +A++++  M   G+ P  +T+  +L A    + +
Sbjct: 256 FNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDI 315

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY 206
             G Q+H  VVK    +N+F  N L+  Y K   + EA ++  +MP  D +++N +V  Y
Sbjct: 316 EFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCY 375

Query: 207 AQNGRFDEALDVCREMESLRIKPDADTMASLLP-----------------SVTNTSPENV 249
           A NGR  E+L++ +E++           A+LL                  ++   +   +
Sbjct: 376 AWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEI 435

Query: 250 L---SVKEMFLK-------------LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
           L   S+ +M+ K             L  ++ V W  MI+ Y    +  + + L+++M+  
Sbjct: 436 LVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRA 495

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
            I  +A + AS++ AC  L++L LG+++H ++       N+   +ALVDMYAKCGS+ +A
Sbjct: 496 KIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDA 555

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
             +F +M  ++ VSW ++ISAY  +G G   + LF +M+ SGL PDS++ +S+L ACSH 
Sbjct: 556 LQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHC 615

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           GL+EEG  YF  MT  YKLVP+ EH+A  +D+L R G+ +EA  L+ QMP EP+E +W S
Sbjct: 616 GLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSS 675

Query: 474 LVAACCLYSNMDIGILAADHIFHLAP-NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532
           ++ +C ++ N ++   AA+ +F++     +  YV +SNIYA AG W +V +V+K M  +G
Sbjct: 676 VLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERG 735

Query: 533 IKKMPGAS-VEMNDQVQIIA 551
           +KK+P  S VE+  +  +  
Sbjct: 736 VKKVPAYSWVEIKHKTHVFT 755



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 221/460 (48%), Gaps = 37/460 (8%)

Query: 52  AQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLY 111
           A+ + ++  H N      ++  Y   G + + R +FD +  +  V + +LI  Y  N  +
Sbjct: 120 ARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQF 179

Query: 112 YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGL 171
            +A  ++  M  HG DPD  +   +L   +  +S+    Q+H  V+K+G D  L   N L
Sbjct: 180 REAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSL 239

Query: 172 VAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA 231
           +  Y K   L  A ++ ND+P +D VT+N+++ GY++ G   EA+++  +M+ +  +P  
Sbjct: 240 LDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTE 299

Query: 232 DTMASLLPS---------------------------VTN------TSPENVLSVKEMFLK 258
            T A++L +                           V N      +  + V+   ++F +
Sbjct: 300 FTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYE 359

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLG 318
           +   + +S+NV++  YA N    E+++L+ +++  G +      A++L        L +G
Sbjct: 360 MPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIG 419

Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
           R+IH           + + N+LVDMYAKCG   EA  +F  +  Q  V WT+MIS+Y   
Sbjct: 420 RQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQK 479

Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIE 437
           G   D + LF +M  + +  D+  + S++ AC+    L  G+  +  I+   Y  +  + 
Sbjct: 480 GLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGY--ISNVF 537

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
             + LVD+  + G +++A  + ++MP+  N   W +L++A
Sbjct: 538 SGSALVDMYAKCGSIKDALQMFQEMPVR-NSVSWNALISA 576



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 190/430 (44%), Gaps = 81/430 (18%)

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
           PC     +   +    L +  S++K G + N +  N LV  + + G L  AR++ ++MP 
Sbjct: 70  PCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPH 129

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK 253
           K++ + N+M+ GY ++G   EA                                     +
Sbjct: 130 KNIFSTNTMIMGYIKSGNLSEA-------------------------------------R 152

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
            +F  +  +  V+W ++I  YA N+   EA  L+++M  HGI+P+ +S+A++L    +  
Sbjct: 153 TLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFD 212

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           ++   R++H +V +      L + N+L+D Y K  SL  A  +F+ +  +D V++ ++++
Sbjct: 213 SVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLT 272

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR------------- 420
            Y   G   +A+ LF KM   G  P    F ++L+A      +E G+             
Sbjct: 273 GYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVW 332

Query: 421 ----------YYFK--IMTEQYKL---VPRIE--HFACLVDLLGRAGKVEEAYDLIKQMP 463
                     +Y K   + E  KL   +P ++   +  LV      G+V+E+ +L K++ 
Sbjct: 333 NVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQ 392

Query: 464 MEPNERI---WGSLVAACCLYSNMDIG------ILAADHIFHLAPNQSGYYVLLSNIYAK 514
               +R    + +L++   +  N+DIG       +  D I  +    S     L ++YAK
Sbjct: 393 FTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNS-----LVDMYAK 447

Query: 515 AGRWGDVKRV 524
            G +G+  R+
Sbjct: 448 CGEFGEANRI 457



 Score = 45.4 bits (106), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 35/151 (23%)

Query: 305 VLPACGDLSALLLGRKIHRYVE----RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           + P   +L   L   K H +V+    +    PN    N LV  + + G L  AR +FD+M
Sbjct: 68  IKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEM 127

Query: 361 RCQDV-------------------------------VSWTSMISAYGMSGQGYDAVALFS 389
             +++                               V+WT +I  Y  + Q  +A  LF 
Sbjct: 128 PHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFI 187

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           +M   G+ PD ++  ++LS  +    + E R
Sbjct: 188 EMGRHGIDPDHVSLATLLSGFTEFDSVNEVR 218


>gi|116309337|emb|CAH66421.1| H0622F05.4 [Oryza sativa Indica Group]
 gi|116309402|emb|CAH66479.1| OSIGBa0137L20.8 [Oryza sativa Indica Group]
          Length = 545

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 174/538 (32%), Positives = 288/538 (53%), Gaps = 43/538 (7%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK-NV 95
           +L +    + L +LHA+I+    LH++ ++   L R   AC  +     V   ++    V
Sbjct: 15  LLGRCRTARCLAQLHARIV-RLGLHNHHAL---LARFAAACDTLSCPSVVASLLSVAVPV 70

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
              N ++ S   +    DAL  +  +      PD +++P +L AC+ ++SL  G  +H +
Sbjct: 71  RLRNAVLASLARHAPLRDALAQFNLLRGGASRPDAFSFPPLLCACARASSLPTGASLHAA 130

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGC-------------------------------LKEA 184
            +++G+D +LF    L+  YG+CG                                +  A
Sbjct: 131 AIRLGVDADLFVRTALIQFYGRCGAAAAARALFDSLTNPSEVSWTAIVTAYVNSGDILTA 190

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           R + + +P ++VV WN+MV GY + G  + A  +  EM      P A T  SL+    N 
Sbjct: 191 RELFDQIPHRNVVHWNAMVDGYVKCGDLEGARKLFDEMPER--TPAAYT--SLIGGYLNA 246

Query: 245 SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
              N+ + + +F KL++++L +W+ MI+  A N  P EA+ ++ + +   I P+ + +  
Sbjct: 247 G--NMGAARTLFDKLEDRDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPDELVIVG 304

Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQ-PNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
           ++ AC  L  + L R I  Y+    +   N+ +   L++M AKCG++  A  +F+ M  +
Sbjct: 305 LMSACSQLGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERATLLFESMSVR 364

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
           DV S+ SM+  + + G    AV LFS+ML+ G+ PD+ AF  VL+ACSHAGL+EEG+ YF
Sbjct: 365 DVFSYCSMMQGHCLHGSASKAVELFSQMLLEGITPDNAAFTVVLTACSHAGLVEEGKRYF 424

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
            +M  +Y +VP  +H+ACLV LLGR G + +AY+LIK MP EP+   WG+L+  C  + +
Sbjct: 425 DMMKNEYMIVPSGDHYACLVSLLGRFGMLRDAYELIKSMPGEPHPGAWGALLGGCKFHCD 484

Query: 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
           +++G +AA  +F + P  +G YV LSNIYA   RWG+V   R  M  +GI K+ G ++
Sbjct: 485 IELGKIAAKKLFEIEPENAGNYVSLSNIYANIDRWGNVSETRAEMTGRGITKIAGCTL 542


>gi|356519224|ref|XP_003528273.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Glycine max]
          Length = 805

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 166/496 (33%), Positives = 270/496 (54%), Gaps = 7/496 (1%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  +M  Y   G + +   VF  +  K+VV +N+++  Y    +   AL +   M   G
Sbjct: 293 LGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVMREEG 352

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
              DC T   +L   + +  L++G++ H   VK   + ++   +G++ MY KCG +  AR
Sbjct: 353 LRFDCVTLSALLAVAADTRDLVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCAR 412

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS 245
           RV + +  KD+V WN+M+A  A+ G   EAL +  +M+   + P+  +  SL+       
Sbjct: 413 RVFSCVRKKDIVLWNTMLAACAEQGLSGEALKLFFQMQLESVPPNVVSWNSLIFGFFKNG 472

Query: 246 PENVLSVKEMFLKLDNK----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAIS 301
              V   + MF ++ +     NL++W  M++    N   + A+ ++ +M+  GI PN++S
Sbjct: 473 --QVAEARNMFAEMCSSGVMPNLITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMS 530

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           + S L  C  ++ L  GR IH YV R+ L  ++ +  +++DMYAKCGSL  A+ VF    
Sbjct: 531 ITSALSGCTSMALLKHGRAIHGYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCVFKMCS 590

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            +++  + +MISAY   GQ  +A+ LF +M   G+ PD I   SVLSACSH GL++EG  
Sbjct: 591 TKELYVYNAMISAYASHGQAREALVLFKQMEKEGIVPDHITLTSVLSACSHGGLMKEGIK 650

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
            FK M  + ++ P  EH+ CLV LL   G+++EA   I  MP  P+  I GSL+ AC   
Sbjct: 651 VFKYMVSELQMKPSEEHYGCLVKLLANDGQLDEALRTILTMPSHPDAHILGSLLTACGQN 710

Query: 482 SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS- 540
           +++++    A  +  L P+ SG YV LSN+YA  G+W  V  +R  M  KG++K+PG S 
Sbjct: 711 NDIELADYIAKWLLKLDPDNSGNYVALSNVYAAVGKWDKVSNLRGLMKEKGLRKIPGCSW 770

Query: 541 VEMNDQVQIIALPLRS 556
           +E+  ++ +     RS
Sbjct: 771 IEVGQELHVFIASDRS 786



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 149/573 (26%), Positives = 258/573 (45%), Gaps = 54/573 (9%)

Query: 7   LCRHFSTTKPVQALVLSTQYTLLSGDACNDILDK---YPDIKTLK-KLHAQIIINQHLHS 62
           LC+H    + V +L       L  G A    L +   Y     L  +LHA +I       
Sbjct: 26  LCKHGRIREAVNSLTQMHSLNLHVGPAIYGTLLQGCVYERALPLALQLHADVI-----KR 80

Query: 63  NPSIGL------KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALH 116
            P+  L      KL+  Y  CG       +F +  + NV  +  +I  +       +AL 
Sbjct: 81  GPTFALNDFVISKLVILYAKCGASEPATRLFRDSPSPNVFSWAAIIGLHTRTGFCEEALF 140

Query: 117 VYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYNLFNGNGLVAMY 175
            Y  M   G  PD +  P VLKAC     +  G  +H  VVK +GL   ++    LV MY
Sbjct: 141 GYIKMQQDGLPPDNFVLPNVLKACGVLKWVRFGKGVHAFVVKTIGLKECVYVATSLVDMY 200

Query: 176 GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA 235
           GKCG +++A +V ++M  ++ VTWNSMV  YAQNG   EA+ V REM    ++     ++
Sbjct: 201 GKCGAVEDAGKVFDEMSERNDVTWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALS 260

Query: 236 SLLPSVTNTSP------------------ENVLSVKEM---------------FLKLDNK 262
               +  N+                    +NVL    M               F  +  K
Sbjct: 261 GFFTACANSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVK 320

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH 322
           ++V+WN+++A YA   M  +A+++   M   G+  + ++++++L    D   L+LG K H
Sbjct: 321 DVVTWNLVVAGYAQFGMVEKALEMCCVMREEGLRFDCVTLSALLAVAADTRDLVLGMKAH 380

Query: 323 RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY 382
            Y  +   + ++ + + ++DMYAKCG +  AR VF  +R +D+V W +M++A    G   
Sbjct: 381 AYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVRKKDIVLWNTMLAACAEQGLSG 440

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL 442
           +A+ LF +M +  + P+ +++ S++      G + E R  F  M     ++P +  +  +
Sbjct: 441 EALKLFFQMQLESVPPNVVSWNSLIFGFFKNGQVAEARNMFAEMCSS-GVMPNLITWTTM 499

Query: 443 VDLLGRAGKVEEAYDLIKQMP---MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
           +  L + G    A  + ++M    + PN     S ++ C   + +  G     ++     
Sbjct: 500 MSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITSALSGCTSMALLKHGRAIHGYVMRRDL 559

Query: 500 NQSGYYVL-LSNIYAKAGRWGDVKRVRKFMNSK 531
           +QS + +  + ++YAK G     K V K  ++K
Sbjct: 560 SQSIHIITSIMDMYAKCGSLDGAKCVFKMCSTK 592


>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
          Length = 1111

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 162/503 (32%), Positives = 274/503 (54%), Gaps = 33/503 (6%)

Query: 70   LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
            L+  Y  CG   +    F E+ NK+++ +  +I +Y       + + ++  M V G  PD
Sbjct: 608  LLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPD 667

Query: 130  CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
                 C+L + S S  +      H  +++     +    N L++MY K G LK A +   
Sbjct: 668  GIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFG 727

Query: 190  DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP---------------DADTM 234
             +  ++   WN MV+GY + G   + + + REM+ L I+                 A  +
Sbjct: 728  RVNEQNFEAWNLMVSGYGKIGLIMKCIGLFREMQCLGIESDSNSLVSVVSSCSQLGATHL 787

Query: 235  ASLLPS--VTNTSPENVL---SVKEMFLKLDN------------KNLVSWNVMIAVYANN 277
            A  +    + N   ENV    S+ +M+ K  N            +++V+WN +I+ YA+ 
Sbjct: 788  ARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRIPRDIVTWNTLISSYAHC 847

Query: 278  SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
               AEA+ LY +M +  ++PN+ ++  VL AC  L++L  G K+H Y+   K + NL + 
Sbjct: 848  GHFAEALSLYDKMVLEDLKPNSATLVXVLSACSHLASLEEGEKVHNYINGGKFEFNLSIA 907

Query: 338  NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
             AL+DMYAKCG L ++R +F+ M  +DV++W  MIS YGM G    A+  F +M  S   
Sbjct: 908  TALIDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEXFQQMEESSAK 967

Query: 398  PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
            P+ + F++VLSAC+HAGL++EG+Y F  M + Y + P ++H+AC+VDLLGR+G ++EA  
Sbjct: 968  PNGLTFLAVLSACAHAGLVKEGKYLFGKM-QDYSVAPNLKHYACMVDLLGRSGNLQEAEA 1026

Query: 458  LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
            L+  MP+ P+  +WG+L+++C +++ +++GI  A H         GYYV++SN+Y+  G+
Sbjct: 1027 LVLSMPISPDGGVWGALLSSCKIHNEIEMGIRIAKHAIXSDVENDGYYVMISNMYSSIGK 1086

Query: 518  WGDVKRVRKFMNSKGIKKMPGAS 540
            W + ++ R  M  +G++K  G S
Sbjct: 1087 WEEAEKARGIMKERGVRKKTGWS 1109



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 194/371 (52%), Gaps = 35/371 (9%)

Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
           G  P+  T     +AC    +LL G  +H  VVK G+DY+    + L++MY KCG  +EA
Sbjct: 562 GERPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSSLLSMYSKCGNPEEA 621

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
            R   ++ +KD+++W SM++ Y++ G   E +D+  EM    I PD   ++ +L S +N+
Sbjct: 622 HRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNS 681

Query: 245 SP----------------------ENVL-----------SVKEMFLKLDNKNLVSWNVMI 271
                                   +N L             ++ F +++ +N  +WN+M+
Sbjct: 682 MRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMV 741

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           + Y    +  + + L+ +M+  GIE ++ S+ SV+ +C  L A  L R IH Y+ +  + 
Sbjct: 742 SGYGKIGLIMKCIGLFREMQCLGIESDSNSLVSVVSSCSQLGATHLARSIHCYMIKNLMD 801

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            N+ + N+L+DMY K G+LT AR +F ++  +D+V+W ++IS+Y   G   +A++L+ KM
Sbjct: 802 ENVSVNNSLIDMYGKSGNLTIARRIFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYDKM 860

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
           ++  L P+S   V VLSACSH   LEEG      +    K    +     L+D+  + G+
Sbjct: 861 VLEDLKPNSATLVXVLSACSHLASLEEGEKVHNYINGG-KFEFNLSIATALIDMYAKCGQ 919

Query: 452 VEEAYDLIKQM 462
           +E++ ++   M
Sbjct: 920 LEKSREIFNSM 930



 Score = 42.7 bits (99), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 112/269 (41%), Gaps = 21/269 (7%)

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           PD  TY   L  C+  N +    ++   + K  +D +    + L  +Y K G L +A   
Sbjct: 224 PDVVTYNLWLTVCASQNDVETAEKVLLEIKKAKIDPDWVTYSSLTNLYIKKGLLDKAATT 283

Query: 188 LNDMPS----KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK-PDAD---TMASLLP 239
           LN+M      K  + ++S+++ +      D    + ++++S+  K  DA+    ++SL+ 
Sbjct: 284 LNEMEKRTSRKGRIAYSSLISLHTNMQDKDGVHRIWKKLKSIFHKMNDAEYTCMISSLVK 343

Query: 240 SVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
                  EN+ S         +  +   N+++A Y N +    A   Y QM   GI P+ 
Sbjct: 344 LGEFEEAENLYSEWTSVSPTGDSRVP--NILLAAYINKNEMEMAEKFYNQMVERGITPSY 401

Query: 300 ISVASVLPACGDLSALLLGRKIHRYVER-----KKLQPNLRLENALVDMYAKCGSLTEAR 354
            +    L   G L    +  K+  Y E+     KK  P+ +L   +     + G++  A 
Sbjct: 402 TTWE--LLTWGYLKKKQM-EKVLDYFEKAVGSVKKWNPDEKLVREVYKNLEEQGNIEGAE 458

Query: 355 TVFDQMRCQDVVS---WTSMISAYGMSGQ 380
            V   +R    VS   +  ++ AY  +G+
Sbjct: 459 KVLVILRKAGHVSTEIYNWLLRAYAKAGK 487


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 174/539 (32%), Positives = 293/539 (54%), Gaps = 39/539 (7%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
           LH++  +   L+  Y  C +    R+VF ++  ++VV +N ++  Y N+ +Y+ A+    
Sbjct: 131 LHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLL 190

Query: 120 NMSVHG-FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN---LFNGNGLVAMY 175
           +M  HG   P+  T   +L   +   +L  G  IH   ++  L+ N   +  G  L+ MY
Sbjct: 191 DMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMY 250

Query: 176 GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM------------- 222
            KC  L  A RV + MP ++ VTW++++ G+    R  EA ++ ++M             
Sbjct: 251 AKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSV 310

Query: 223 -ESLRIKPD-ADT-MASLLPSVTN--------TSPENVLS-------VKEMFLKLDN--- 261
             +LR+    AD  M + L ++          T+  ++LS       + E  +  D    
Sbjct: 311 ASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAV 370

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           K+ +S+  +++    N    EA  ++ +M+   +EP+  ++ S++PAC  L+AL  G+  
Sbjct: 371 KDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCS 430

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
           H  V  + L     + N+L+DMYAKCG +  +R VFD+M  +DVVSW +MI+ YG+ G G
Sbjct: 431 HGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLG 490

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
            +A  LF  M   G  PD + F+ +++ACSH+GL+ EG+++F  MT +Y ++PR+EH+ C
Sbjct: 491 KEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYIC 550

Query: 442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501
           +VDLL R G ++EAY  I+ MP++ + R+WG+L+ AC ++ N+D+G   +  I  L P  
Sbjct: 551 MVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEG 610

Query: 502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRSSKC 559
           +G +VLLSNI++ AGR+ +   VR     KG KK PG S +E+N  +       +S  C
Sbjct: 611 TGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPC 669



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/439 (28%), Positives = 214/439 (48%), Gaps = 42/439 (9%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           GQ+   R VFD I   +   +N LIR+Y     ++ A+ +Y++M      P+ YT+P VL
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
           KACS    L  G  IH      GL  +LF    L+ +Y +C     AR V   MP +DVV
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESL-RIKPDADTMASLLP----------------- 239
            WN+M+AGYA +G +  A+    +M+    ++P+A T+ SLLP                 
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAY 227

Query: 240 ---SVTNTSPENVL---SVKEMFLKLDN-------------KNLVSWNVMIAVYANNSMP 280
              +    + E VL   ++ +M+ K                +N V+W+ +I  +      
Sbjct: 228 CLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRM 287

Query: 281 AEAVDLYLQMEVHGI-EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
            EA +L+  M V G+   +A SVAS L  C  L+ L +G ++H  + +  +  +L   N+
Sbjct: 288 TEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNS 347

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           L+ MYAK G + EA   FD++  +D +S+ +++S    +G+  +A  +F KM    + PD
Sbjct: 348 LLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPD 407

Query: 400 SIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
               VS++ ACSH   L+ G+  +  ++     L   I +   L+D+  + GK++ +  +
Sbjct: 408 IATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICN--SLIDMYAKCGKIDLSRQV 465

Query: 459 IKQMPMEPNERIWGSLVAA 477
             +MP   +   W +++A 
Sbjct: 466 FDKMPAR-DVVSWNTMIAG 483



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 8/237 (3%)

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           +++F ++   +  ++N +I  Y+       A+DLY  M    + PN  +   VL AC  L
Sbjct: 54  RQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSAL 113

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
             L  GR IH +     L  +L +  AL+D+Y +C     AR VF +M  +DVV+W +M+
Sbjct: 114 VDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAML 173

Query: 373 SAYGMSGQGYDAVA-LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YYFKIMT 427
           + Y   G  + A+A L       GL P++   VS+L   +  G L +G     Y  +   
Sbjct: 174 AGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACL 233

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNM 484
           EQ +   ++     L+D+  +  ++  A  +   MP+  N+  W +L+    L   M
Sbjct: 234 EQNE--EQVLIGTALLDMYAKCKQLVYACRVFHGMPVR-NDVTWSALIGGFVLCDRM 287



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 11/167 (6%)

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           G L  AR VFD++   D  ++ ++I AY   G  + A+ L+  ML   + P+   F  VL
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
            ACS    L  GR           L   +     L+DL  R  +   A ++  +MPM  +
Sbjct: 108 KACSALVDLRAGR-TIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMR-D 165

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFH------LAPNQSGYYVLL 508
              W +++A    Y+N  +   A  H+        L PN S    LL
Sbjct: 166 VVAWNAMLAG---YANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLL 209


>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g44880-like [Glycine max]
          Length = 599

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 180/561 (32%), Positives = 291/561 (51%), Gaps = 52/561 (9%)

Query: 25  QYTLLSG--DACNDILD-KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMV 81
           Q TL S     C  IL  +   I TL ++HA  I+   LHSN ++    + T  +     
Sbjct: 8   QRTLWSNAERTCLHILQCRTKSIPTLLQIHA-FILRHSLHSNLNLLTAFVTTCASLAASA 66

Query: 82  D--------TRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG--FDPDCY 131
                     R  F+    ++    N +I ++     +     +++++      F PD Y
Sbjct: 67  KRPLAIINHARRFFNATHTRDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPFTPDGY 126

Query: 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191
           T+  ++K C+   +   G  +H  V+K G+ ++L+    LV MY K G L  AR+V ++M
Sbjct: 127 TFTALVKGCATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEM 186

Query: 192 PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA--------------SL 237
             +  V+W +++ GYA+ G   EA  +  EME      D D +A               L
Sbjct: 187 SVRSKVSWTAVIVGYARCGDMSEARRLFDEME------DRDIVAFNAMIDGYVKMGCVGL 240

Query: 238 LPSVTNTSPE-NVLS----------------VKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
              + N   E NV+S                 K MF  +  KN+ +WN MI  Y  N   
Sbjct: 241 ARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRS 300

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            +A++L+ +M+   +EPN ++V  VLPA  DL AL LGR IHR+  RKKL  + R+  AL
Sbjct: 301 HDALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTAL 360

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           +DMYAKCG +T+A+  F+ M  ++  SW ++I+ + ++G   +A+ +F++M+  G  P+ 
Sbjct: 361 IDMYAKCGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFGPNE 420

Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
           +  + VLSAC+H GL+EEGR +F  M E++ + P++EH+ C+VDLLGRAG ++EA +LI+
Sbjct: 421 VTMIGVLSACNHCGLVEEGRRWFNAM-ERFGIAPQVEHYGCMVDLLGRAGCLDEAENLIQ 479

Query: 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD 520
            MP + N  I  S + AC  ++++         +  +  + +G YV+L N+YA   RW D
Sbjct: 480 TMPYDANGIILSSFLFACGYFNDVLRAERVLKEVVKMDEDVAGNYVMLRNLYATRQRWTD 539

Query: 521 VKRVRKFMNSKGIKKMPGASV 541
           V+ V++ M  +G  K    SV
Sbjct: 540 VEDVKQMMKKRGTSKEVACSV 560


>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
 gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
          Length = 500

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 168/505 (33%), Positives = 268/505 (53%), Gaps = 68/505 (13%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           +I +  H+NP I                     ++ T++N V +   I     N    +A
Sbjct: 14  LITRKRHANPKI------------------QRLNQSTSENTVSWTSRITLLTRNGRLAEA 55

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKAC----SGSNSLLVGLQIHCSVVKVGLDYN-LFNGN 169
              + +M + G +P+  T+  +L  C    SGS +L  G  +H    K+GLD N +  G 
Sbjct: 56  AKEFSDMRLAGVEPNHITFIAILSGCGDFPSGSEAL--GDLLHGYACKLGLDRNHVMVGT 113

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            ++ MY K G +K+AR V + M  K+ VTWN+M+ GY ++G+ D A              
Sbjct: 114 AIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMIDGYMRSGQVDNA-------------- 159

Query: 230 DADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289
                                   +MF K+  ++L+SW  MI  + N     EA+  + +
Sbjct: 160 -----------------------AKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFRE 196

Query: 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
           M++ G++P+ +++ + L AC +L AL  G  +HRYV  +  + N+R+ N+L+D+Y +CG 
Sbjct: 197 MQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGC 256

Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
           +  AR VFD+M  + VVSW S+I  +  +G  ++++  F KM      PD++ F   L+A
Sbjct: 257 VEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTA 316

Query: 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNER 469
           CSH GL+EEG  YF+IM   Y++ PRIEH+ CLVDL  RAG++E+A  L++ MPM+PNE 
Sbjct: 317 CSHVGLVEEGLRYFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEV 376

Query: 470 IWGSLVAACCLYSNMDIGILAA---DHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526
           + GSL+AAC  + N    +LA     H+  L       YV+LSN+YA  G+W    ++R+
Sbjct: 377 VIGSLLAACRNHGNNT--VLAEKLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRR 434

Query: 527 FMNSKGIKKMPG-ASVEMNDQVQII 550
            M   G+KK PG +S+E++D   + 
Sbjct: 435 KMKGLGLKKQPGFSSIEIDDCTHVF 459


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 167/503 (33%), Positives = 278/503 (55%), Gaps = 17/503 (3%)

Query: 52  AQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLY 111
           A+ + ++  H N      L+  Y   G++ + R +F+  ++  ++  N L+  YV   + 
Sbjct: 145 ARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNML 204

Query: 112 YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI-HCSVVKVGLDYNLFNGNG 170
            DA  ++  + V     D  ++  ++   +    L    ++   S V+     ++F    
Sbjct: 205 GDARQLFDQIPVR----DLISWNTMISGYAQDGDLSQARRLFEESPVR-----DVFTWTA 255

Query: 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
           +V  Y + G L EARRV ++MP K  +++N M+AGYAQ  R D   ++  EM      P+
Sbjct: 256 MVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPF----PN 311

Query: 231 ADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
             +   ++         ++   + +F  +  ++ VSW  +IA YA N +  EA+++ ++M
Sbjct: 312 IGSWNIMISGYCQNG--DLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEM 369

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
           +  G   N  +    L AC D++AL LG+++H  V R   +    + NALV MY KCG +
Sbjct: 370 KRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCI 429

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
            EA  VF  ++ +D+VSW +M++ Y   G G  A+ +F  M+ +G+ PD I  V VLSAC
Sbjct: 430 DEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSAC 489

Query: 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI 470
           SH GL + G  YF  M + Y + P  +H+AC++DLLGRAG +EEA +LI+ MP EP+   
Sbjct: 490 SHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAAT 549

Query: 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530
           WG+L+ A  ++ NM++G  AA+ +F + P+ SG YVLLSN+YA +GRW DV ++R  M  
Sbjct: 550 WGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQ 609

Query: 531 KGIKKMPGAS-VEMNDQVQIIAL 552
            G++K PG S VE+ +++    +
Sbjct: 610 IGVQKTPGYSWVEVQNKIHTFTV 632



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 162/349 (46%), Gaps = 57/349 (16%)

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM- 222
           +LF+ N ++  Y +   L++AR + + MP KDVV+WN+M++GY ++G  DEA DV   M 
Sbjct: 94  DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMP 153

Query: 223 --------------------ESLRIKPDADTMASLLPS---VTNTSPENVLS-VKEMFLK 258
                               E  R   ++ +   L+     +      N+L   +++F +
Sbjct: 154 HKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQ 213

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH---------------GIEPNAISVA 303
           +  ++L+SWN MI+ YA +   ++A  L+ +  V                G+   A  V 
Sbjct: 214 IPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVF 273

Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQ-----------PNLRLENALVDMYAKCGSLTE 352
             +P   ++S  ++   I  Y + K++            PN+   N ++  Y + G L +
Sbjct: 274 DEMPQKREMSYNVM---IAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQ 330

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           AR +FD M  +D VSW ++I+ Y  +G   +A+ +  +M   G   +   F   LSAC+ 
Sbjct: 331 ARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACAD 390

Query: 413 AGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460
              LE G+  + +++   Y+    + +   LV +  + G ++EAYD+ +
Sbjct: 391 IAALELGKQVHGQVVRTGYEKGCLVGN--ALVGMYCKCGCIDEAYDVFQ 437



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 143/333 (42%), Gaps = 59/333 (17%)

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           N +++ Y +      AR + + MP KD+ +WN M+ GYA+N R  +A             
Sbjct: 68  NAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDA------------- 114

Query: 229 PDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
                                   + +F  +  K++VSWN M++ Y  +    EA D++ 
Sbjct: 115 ------------------------RMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFD 150

Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
           +M       N+IS   +L A      L   R++       K    L   N L+  Y K  
Sbjct: 151 RMP----HKNSISWNGLLAAYVRSGRLEEARRLF----ESKSDWELISCNCLMGGYVKRN 202

Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
            L +AR +FDQ+  +D++SW +MIS Y   G    A  LF +  +     D   + +++ 
Sbjct: 203 MLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVR----DVFTWTAMVY 258

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
           A    G+L+E R  F  M ++ ++      +  ++    +  +++   +L ++MP  PN 
Sbjct: 259 AYVQDGMLDEARRVFDEMPQKREMS-----YNVMIAGYAQYKRMDMGRELFEEMPF-PNI 312

Query: 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501
             W  +++  C   N D+    A ++F + P +
Sbjct: 313 GSWNIMISGYC--QNGDLA--QARNLFDMMPQR 341



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 20/169 (11%)

Query: 319 RKIHR---YVERKKLQPNLRLEN-------ALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           R++H    +V+R    P    E+         +  + + G    A  VFD M  ++ VS+
Sbjct: 8   RQLHSSIFHVQRPTNYPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSY 67

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            +MIS Y  + +   A  LF KM       D  ++  +L+  +    L + R  F  M E
Sbjct: 68  NAMISGYLRNAKFSLARDLFDKMPHK----DLFSWNLMLTGYARNRRLRDARMLFDSMPE 123

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           +      +  +  ++    R+G V+EA D+  +MP   N   W  L+AA
Sbjct: 124 K-----DVVSWNAMLSGYVRSGHVDEARDVFDRMP-HKNSISWNGLLAA 166


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 173/521 (33%), Positives = 278/521 (53%), Gaps = 34/521 (6%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
           +G  L+  Y   G + + R +FD +  +N+V +  +I  Y +  +  +AL V+  M +  
Sbjct: 149 VGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVE 208

Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
            + + + +  VL A      +  G Q+HC VVK G+   +   N LV MY KCG L  + 
Sbjct: 209 GNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSL 268

Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN-- 243
            +      K+ +TW++++ GY+Q G   +AL +  +M      P   T+  +L + ++  
Sbjct: 269 MLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVA 328

Query: 244 ------------------TSPENVLSVKEMFLK-------------LDNKNLVSWNVMIA 272
                             T      ++ +M+ K             L   +LV W  +IA
Sbjct: 329 AIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIA 388

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
            Y  N    EA+ +Y +M++  I PN +++ASVL AC +L+AL  G++IH    +  L P
Sbjct: 389 GYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGP 448

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
            L + +AL  MYAKCGSL E   +F +M  +D+VSW +MIS    +G G +A+ LF +M 
Sbjct: 449 ELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMR 508

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
           + G  PD I FV+VLSACSH G+++ G  YF +M +++ LVPR+EH+AC+VD+L RAGK+
Sbjct: 509 LEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKL 568

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
            EA + I+   ++    +W  L+ AC  + N ++G  A + +  L   +S  YVLLS+IY
Sbjct: 569 NEAKEFIESAIIDHGMCLWRILLPACRNHCNYELGAYAGEKLMELGSRESSAYVLLSSIY 628

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
              GR  DV RVR+ M  +G++K  G S +E+   V +  +
Sbjct: 629 TAMGRLADVVRVRRMMKVRGVRKETGCSWIELKSHVHVFVV 669



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 144/512 (28%), Positives = 247/512 (48%), Gaps = 59/512 (11%)

Query: 36  DILDKYPDIKTLKK---LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           ++L +Y D K+LKK   LHA II   +L S   +   L++ Y  CG +   + VF+ + +
Sbjct: 12  NLLIQYADQKSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFENLKH 71

Query: 93  KNVVFFNVLIRSYVNNYLYYD--ALHVYKNMSVHGFDPDCYTYPCVLKACS---GSNSLL 147
           KNVV +N LI    +N        L +++ M  +   PD +T+P V  A +   G N   
Sbjct: 72  KNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAALNLGCN--F 129

Query: 148 VGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA 207
              Q+H   +K     ++F G+ LV  Y K GC+ EAR++ + MP +++V+W +M++GYA
Sbjct: 130 DARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYA 189

Query: 208 QNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKE------------- 254
                 EAL V   M  +    +     S+L ++    PE V S K+             
Sbjct: 190 SKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSAL--VCPEFVDSGKQVHCVVVKNGVLEF 247

Query: 255 ---------MFLKLDN-------------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
                    M+ K  N             KN ++W+ +I  Y+      +A+ L+ +M  
Sbjct: 248 VSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHY 307

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
            G  P+  ++  VL AC D++A+  G++ H Y+ +   +  +    ALVDMYAK G   +
Sbjct: 308 AGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGD 367

Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           AR  FD +   D+V WTS+I+ Y  +G+  +A++++ +M M  + P+ +   SVL ACS+
Sbjct: 368 ARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSN 427

Query: 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG 472
              LE+G+      T +Y L P +   + L  +  + G +EE   + ++M ++ +   W 
Sbjct: 428 LAALEQGK-QIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRM-LQRDIVSWN 485

Query: 473 SLVA----------ACCLYSNMDIGILAADHI 494
           ++++          A  L+  M +     DHI
Sbjct: 486 AMISGLSQNGHGREALELFEEMRLEGTKPDHI 517



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 91/187 (48%), Gaps = 10/187 (5%)

Query: 297 PNAISVASVLPACGDLSALLLGRKIHRYVER-KKLQPNLRLENALVDMYAKCGSLTEART 355
           P   S  ++L    D  +L  G+ +H ++ +   L     L N L+  YAKCG L  A+ 
Sbjct: 5   PQNRSFYNLLIQYADQKSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKL 64

Query: 356 VFDQMRCQDVVSWTSMISAYGMSGQGYDA----VALFSKMLMSGLCPDSIAFVSVLSACS 411
           VF+ ++ ++VVS+  +I  +G+S  G       + LF +M+ + + PD+  F  V +A +
Sbjct: 65  VFENLKHKNVVSYNCLI--HGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAA 122

Query: 412 -HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI 470
            + G   + R    ++  +   +  +   + LV+   + G V EA  L  +MP E N   
Sbjct: 123 LNLGCNFDAR-QVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMP-ERNLVS 180

Query: 471 WGSLVAA 477
           W ++++ 
Sbjct: 181 WTTMISG 187



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 118/281 (41%), Gaps = 37/281 (13%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++HA+ I    L    SI   L   Y  CG + +   +F  +  +++V +N +I     
Sbjct: 435 KQIHARTI-KYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQ 493

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N    +AL +++ M + G  PD  T+  VL ACS           H  +VK G  Y  FN
Sbjct: 494 NGHGREALELFEEMRLEGTKPDHITFVTVLSACS-----------HMGIVKRGWAY--FN 540

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
                 M+ +  CL         +P   V  +  MV   ++ G+ +EA +    +ES  I
Sbjct: 541 -----MMFDEF-CL---------VPR--VEHYACMVDVLSRAGKLNEAKEF---IESAII 580

Query: 228 KPDADTMASLLPSVTN-TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
                    LLP+  N  + E      E  ++L ++   ++ ++ ++Y      A+ V +
Sbjct: 581 DHGMCLWRILLPACRNHCNYELGAYAGEKLMELGSRESSAYVLLSSIYTAMGRLADVVRV 640

Query: 287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
              M+V G+     +  S +     +   ++G +IH  +E 
Sbjct: 641 RRMMKVRGVRKE--TGCSWIELKSHVHVFVVGDQIHPQIEE 679


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 157/456 (34%), Positives = 261/456 (57%), Gaps = 8/456 (1%)

Query: 87  FDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNS 145
           F ++ N NV  +N +I+ +V     + AL  Y +M       P  YT+  ++KAC+   +
Sbjct: 94  FTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCA 153

Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           + +G  +HC + K G + +LF    LV  Y K   L EAR+V ++M  +D   W +M++ 
Sbjct: 154 VELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMLSA 213

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
            A+ G  D A  +  EM     + +  T  +++   T     NV S + +F ++  K+++
Sbjct: 214 LARVGDMDSARKLFEEMP----ERNTATWNTMIDGYTRLG--NVESAELLFNQMPTKDII 267

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
           SW  MI  Y+ N    +A+ +Y +M ++GI P+ +++++V  AC  + AL LG++IH YV
Sbjct: 268 SWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYV 327

Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
             + L  ++ + +ALVDMYAKCGSL  +  +F ++  +++  W ++I    + G    A+
Sbjct: 328 MSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKAL 387

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
            +F+ M    + P+ + F+S+LSAC+HAGL++EGR  F  MT  Y + P I H+ C+VD+
Sbjct: 388 RMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDM 447

Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
           L ++G + EA +LIK M  EPN  IWG+L+  C L+ N +I   A + +  L P  SG+Y
Sbjct: 448 LSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHY 507

Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGI-KKMPGAS 540
            LL ++YA+   W +V  +R  M  KG+ KK PG+S
Sbjct: 508 NLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSS 543


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 171/525 (32%), Positives = 274/525 (52%), Gaps = 43/525 (8%)

Query: 25  QYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR 84
            +  L+ D    +L      +   +LHA ++  + L S+ ++  +L R Y A G++  + 
Sbjct: 18  HHGALTADRAASLLAACSTARRASELHAAVV-RKGLDSDRAVAFRLQRAYAASGRLDHSL 76

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
            +     +   +F+   I ++ +  L+   L +  +M   G  P  +T    L AC G  
Sbjct: 77  TLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRG-- 134

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
            L +G  +H    K+ L  + +    L++MY + G    AR + ++MP   VV+  +M+ 
Sbjct: 135 -LSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLT 193

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL 264
            YA  G  D+A                                     + +F  L  K+ 
Sbjct: 194 CYANMGALDDA-------------------------------------RRLFDGLPRKDF 216

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           + WN MI  Y  +  P EA+ L+ +M     EP+ ++V  VL A   L  +  G+ +H Y
Sbjct: 217 ICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSY 276

Query: 325 VERKK-LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383
           V+  + +Q N+R+  ALVDMY KCGSL +A  VF  +  +D+V W +MI+ Y M G    
Sbjct: 277 VKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRK 336

Query: 384 AVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV 443
           A+ +F ++   GL P  I F+ +L+ACSH+GL+EEGR +F+ M  +Y + P+IEH+ C+V
Sbjct: 337 ALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMV 396

Query: 444 DLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503
           DLLGRAG +EEA+ L++ + + P+  +W SL+AAC L+ NM +G   AD +       SG
Sbjct: 397 DLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSG 456

Query: 504 YYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
            Y+LLSNIYA  G+W +V RVR  M + GI+K PG S +E++ +V
Sbjct: 457 MYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKV 501


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 171/541 (31%), Positives = 283/541 (52%), Gaps = 43/541 (7%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDAL-HVY 118
           LH++  +   L+  Y  C +     +VF ++  ++VV +N ++  Y N+ +Y+ A+ H+ 
Sbjct: 130 LHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLL 189

Query: 119 KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN---LFNGNGLVAMY 175
                 G  P+  T   +L   +   +L  G  +H   ++  LD N   +  G  L+ MY
Sbjct: 190 DMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMY 249

Query: 176 GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA-------------------- 215
            KC  L  A RV + M  ++ VTW++++ G+    R  EA                    
Sbjct: 250 AKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSV 309

Query: 216 ---LDVCREMESLR-------------IKPDADTMASLLPSVTNTSPENVLSVKEMFLKL 259
              L VC  +  LR             I  D     SLL         N  ++  +F ++
Sbjct: 310 ASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATM--LFDEI 367

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
             K+ +S+  +++ Y  N    EA  ++ +M+   ++P+  ++ S++PAC  L+AL  GR
Sbjct: 368 AIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGR 427

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
             H  V  + L     + N+L+DMYAKCG +  +R VFD+M  +D+VSW +MI+ YG+ G
Sbjct: 428 CSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHG 487

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
            G +A  LF  M   G  PD + F+ +++ACSH+GL+ EG+++F  MT +Y ++PR+EH+
Sbjct: 488 LGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHY 547

Query: 440 ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
            C+VDLL R G ++EAY  I+ MP++ + R+WG+L+ AC ++ N+D+G   +  I  L P
Sbjct: 548 ICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGP 607

Query: 500 NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRSSK 558
             +G +VLLSNI++ AGR+ +   VR     KG KK PG S +E+N  +       +S  
Sbjct: 608 EGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHP 667

Query: 559 C 559
           C
Sbjct: 668 C 668



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 129/441 (29%), Positives = 219/441 (49%), Gaps = 42/441 (9%)

Query: 76  ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC 135
           A GQ+   R VFD I   +   +N LIR+Y     ++ A+ +Y++M      P+ YT+P 
Sbjct: 45  ARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPF 104

Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
           VLKACS    L  G  IH     VGL  +LF    L+ +Y +C     A  V   MP +D
Sbjct: 105 VLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRD 164

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESL-RIKPDADTMASLLP--------------- 239
           VV WN+M+AGYA +G +  A+    +M+    ++P+A T+ SLLP               
Sbjct: 165 VVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVH 224

Query: 240 -----SVTNTSPENVL---SVKEMFLKLDN-------------KNLVSWNVMIAVYANNS 278
                +  + + E VL   ++ +M+ K  +             +N V+W+ +I  +    
Sbjct: 225 AYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCD 284

Query: 279 MPAEAVDLYLQMEVHGI-EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
              EA +L+  M V G+   +A SVAS L  C  L+ L +G ++H  + +  +  +L   
Sbjct: 285 RMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAG 344

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
           N+L+ MYAK G + EA  +FD++  +D +S+ +++S Y  +G+  +A  +F KM    + 
Sbjct: 345 NSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQ 404

Query: 398 PDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
           PD    VS++ ACSH   L+ GR  +  ++     L   I +   L+D+  + G+++ + 
Sbjct: 405 PDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICN--SLIDMYAKCGRIDLSR 462

Query: 457 DLIKQMPMEPNERIWGSLVAA 477
            +  +MP   +   W +++A 
Sbjct: 463 QVFDKMPAR-DIVSWNTMIAG 482



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 151/320 (47%), Gaps = 14/320 (4%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++   +LHA ++    +H++ + G  L+  Y   G + +   +FDEI  K+ + +  L+
Sbjct: 321 DLRMGTQLHA-LLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALL 379

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
             YV N    +A  V+K M      PD  T   ++ ACS   +L  G   H SV+  GL 
Sbjct: 380 SGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLA 439

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
                 N L+ MY KCG +  +R+V + MP++D+V+WN+M+AGY  +G   EA  +   M
Sbjct: 440 LETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSM 499

Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLVSWNVMIAVYANN 277
           ++   +PD  T   L+ + +++    V   K  F  + +K      +  +  M+ + A  
Sbjct: 500 KNQGFEPDDVTFICLIAACSHSGL--VTEGKHWFDTMTHKYGILPRMEHYICMVDLLARG 557

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
               EA      M    ++ +     ++L AC     + LG+++ R ++  KL P     
Sbjct: 558 GFLDEAYQFIQSMP---LKADVRVWGALLGACRIHKNIDLGKQVSRMIQ--KLGPEGTGN 612

Query: 338 NALV-DMYAKCGSLTEARTV 356
             L+ ++++  G   EA  V
Sbjct: 613 FVLLSNIFSAAGRFDEAAEV 632



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 16/241 (6%)

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           +++F ++   +  ++N +I  Y+       A+DLY  M    + PN  +   VL AC  L
Sbjct: 53  RQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSAL 112

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
           + L  GR IH +     L  +L +  AL+D+Y +C     A  VF +M  +DVV+W +M+
Sbjct: 113 ADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAML 172

Query: 373 SAYGMSGQGYDAVA-LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG--------RYYF 423
           + Y   G  + A+A L       GL P++   VS+L   +  G L +G        R Y 
Sbjct: 173 AGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYL 232

Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
               EQ  +         L+D+  +   +  A  +   M +  NE  W +L+    L   
Sbjct: 233 DQNEEQVLIG------TALLDMYAKCKHLVYACRVFHGMTVR-NEVTWSALIGGFVLCDR 285

Query: 484 M 484
           M
Sbjct: 286 M 286



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 15/169 (8%)

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           G L  AR VFD++   D  ++ ++I AY   G  + A+ L+  ML   + P+   F  VL
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMPME 465
            ACS    L  GR    I      +    + F    L+DL  R  +   A ++  +MPM 
Sbjct: 107 KACSALADLCAGR---TIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMR 163

Query: 466 PNERIWGSLVAACCLYSNMDIGILAADHIFH------LAPNQSGYYVLL 508
            +   W +++A    Y+N  +   A  H+        L PN S    LL
Sbjct: 164 -DVVAWNAMLAG---YANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLL 208


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 171/547 (31%), Positives = 301/547 (55%), Gaps = 42/547 (7%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           K   ++  ++LH  +II     ++  +   L++ Y  CG + D + VF+ +  K++  ++
Sbjct: 22  KLQALEEGRRLHEHLIITG-FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWS 80

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            +I +Y        A+ +Y+ M   G +P+  T+ C L  C+    L  G  IH  ++  
Sbjct: 81  SIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILAS 140

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
            +  +    + L+ MY KC  + EAR+V   M +++V ++ +M++ Y Q G   EAL++ 
Sbjct: 141 KVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELF 200

Query: 220 REMESLR-IKPDADTMASLLPSV----------------------TNTSPENVL------ 250
             M  +  I+P+A T A++L +V                      TN   +N L      
Sbjct: 201 SRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGK 260

Query: 251 -----SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
                  +++F  +  +N++SW  MIA YA +  P EA++L+ +M+V   EP+ +S +S 
Sbjct: 261 CGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMDV---EPSGVSFSSA 317

Query: 306 LPACGDLSALLLGRKIH-RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
           L AC  L AL  GR+IH R VE     P  ++E +L+ MYA+CGSL +AR VF++M+ +D
Sbjct: 318 LNACALLGALDEGREIHHRVVEAHLASP--QMETSLLSMYARCGSLDDARRVFNRMKTRD 375

Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
             S  +MI+A+   G+   A+ ++ +M   G+  D I FVSVL ACSH  L+ + R +F+
Sbjct: 376 AFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLVACSHTSLVADCRDFFQ 435

Query: 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNM 484
            +   + +VP +EH+ C+VD+LGR+G++ +A +L++ MP + +   W +L++ C  + ++
Sbjct: 436 SLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQTDAVAWMTLLSGCKRHGDL 495

Query: 485 DIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEM 543
           + G  AA  +F LAP ++  YV LSN+YA A R+ D +RVRK M  +G+      S +E+
Sbjct: 496 NRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTTPVAVSYIEI 555

Query: 544 NDQVQII 550
           ++++ + 
Sbjct: 556 DNELHMF 562



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 195/376 (51%), Gaps = 39/376 (10%)

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M   G   D +    ++ AC+   +L  G ++H  ++  G   ++     L+ MY KCG 
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           L +A+RV   M  KD+  W+S+++ YA+ GR + A+ + R M +  ++P+  T A  L  
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 120

Query: 241 VTNTS------------------PENVL--SVKEMFLKLDN-------------KNLVSW 267
             + +                   ++VL  S+  M+LK D              +N+ S+
Sbjct: 121 CASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSY 180

Query: 268 NVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
             MI+ Y      AEA++L+ +M +V  IEPNA + A++L A   L  L  GRK+HR++ 
Sbjct: 181 TAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLA 240

Query: 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
            +    N+ ++NALV MY KCGS  EAR VFD M  ++V+SWTSMI+AY   G   +A+ 
Sbjct: 241 SRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALN 300

Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446
           LF +M +    P  ++F S L+AC+  G L+EGR     + E +   P++E    L+ + 
Sbjct: 301 LFKRMDVE---PSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQME--TSLLSMY 355

Query: 447 GRAGKVEEAYDLIKQM 462
            R G +++A  +  +M
Sbjct: 356 ARCGSLDDARRVFNRM 371


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 177/571 (30%), Positives = 293/571 (51%), Gaps = 68/571 (11%)

Query: 35  NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
           N+I+  Y  +K+    +A+ + ++    N      L+  Y   G + +    F+++ +++
Sbjct: 45  NNIVHAYALMKS--STYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRD 102

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDC--YTYPCVLKACSGSNSLLVGLQI 152
            V +NVLI  Y  + L   A+  Y  M +  F  +    T   +LK  S +  + +G QI
Sbjct: 103 GVTWNVLIEGYSLSGLVGAAVKAYNTM-MRDFSANLTRVTLMTMLKLSSSNGHVSLGKQI 161

Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV---LNDMPS---------------- 193
           H  V+K+G +  L  G+ L+ MY   GC+ +A++V   L+D  +                
Sbjct: 162 HGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMI 221

Query: 194 -----------KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS-- 240
                      KD V+W +M+ G AQNG   EA++  REM+   +K D     S+LP+  
Sbjct: 222 EDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACG 281

Query: 241 --------------VTNTSPENVLSV-----------------KEMFLKLDNKNLVSWNV 269
                         +  T+ ++ + V                 K +F ++  KN+VSW  
Sbjct: 282 GLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTA 341

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           M+  Y       EAV ++L M+  GI+P+  ++   + AC ++S+L  G + H       
Sbjct: 342 MVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSG 401

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           L   + + N+LV +Y KCG + ++  +F++M  +D VSWT+M+SAY   G+  + + LF 
Sbjct: 402 LIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFD 461

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           KM+  GL PD +    V+SACS AGL+E+G+ YFK+MT +Y +VP I H++C++DL  R+
Sbjct: 462 KMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRS 521

Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
           G++EEA   I  MP  P+   W +L++AC    N++IG  AA+ +  L P+    Y LLS
Sbjct: 522 GRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLS 581

Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           +IYA  G+W  V ++R+ M  K +KK PG S
Sbjct: 582 SIYASKGKWDSVAQLRRGMREKNVKKEPGQS 612



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 101/451 (22%), Positives = 176/451 (39%), Gaps = 114/451 (25%)

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           IH ++++       F  N +V  Y        ARRV + +P  ++ +WN+++  Y++ G 
Sbjct: 28  IHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAG- 86

Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
                 +  EMES                               F KL +++ V+WNV+I
Sbjct: 87  ------LISEMES------------------------------TFEKLPDRDGVTWNVLI 110

Query: 272 AVYANNSMPAEAVDLY-LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
             Y+ + +   AV  Y   M         +++ ++L        + LG++IH  V +   
Sbjct: 111 EGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGF 170

Query: 331 QPNLRLENALVDMYAKCGSLTEARTVF-------------------------DQMRC--- 362
           +  L + + L+ MYA  G +++A+ VF                         D ++    
Sbjct: 171 ESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRG 230

Query: 363 --QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
             +D VSW +MI     +G   +A+  F +M + GL  D   F SVL AC   G + EG+
Sbjct: 231 MEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGK 290

Query: 421 -------------------------------YYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
                                          +Y K + ++ K    +  +  +V   G+ 
Sbjct: 291 QIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQ-KNVVSWTAMVVGYGQT 349

Query: 450 GKVEEAYDLIKQMP---MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG--Y 504
           G+ EEA  +   M    ++P+    G  ++AC   S+++ G       FH     SG  +
Sbjct: 350 GRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEG-----SQFHGKAITSGLIH 404

Query: 505 YVLLSN----IYAKAGRWGDVKRVRKFMNSK 531
           YV +SN    +Y K G   D  R+   MN +
Sbjct: 405 YVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR 435


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 170/556 (30%), Positives = 281/556 (50%), Gaps = 49/556 (8%)

Query: 42  PDIKTLKKL------HAQIIINQHLH---------SNPSIGLKLMRTYGACGQMVDTRHV 86
           PD  TL  L         +   Q LH         SN  I   L+  Y  C  +    + 
Sbjct: 370 PDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNY 429

Query: 87  FDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL 146
           F E   +NVV +NV++ +Y       ++  +++ M +    P+ YTYP +LK C     L
Sbjct: 430 FLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDL 489

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGY 206
            +G QIH  ++K     N +  + L+ MY K G L  A  +L     KDVV+W +M+AGY
Sbjct: 490 ELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGY 549

Query: 207 AQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP-------------------- 246
            Q    D+AL   R+M    I+ D   + + + +                          
Sbjct: 550 TQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDL 609

Query: 247 --ENVL--------SVKEMFLKLDNKNL---VSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
             +N L        +++E +L  +       ++WN +++ +  +    EA+ ++ +M   
Sbjct: 610 PFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNRE 669

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
           GI+ N  +  S + A  + + +  G+++H  + +        + NA++ MYAKCGS+++A
Sbjct: 670 GIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDA 729

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
           +  F ++  ++ VSW +MI+AY   G G +A+  F +M+ S + P+ +  V VLSACSH 
Sbjct: 730 KKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI 789

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           GL+++G  YF+ M  +Y L P+ EH+ C+VD+L RAG +  A D I +MP+EP+  +W +
Sbjct: 790 GLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRT 849

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           L++AC ++ NM+IG  AA H+  L P  S  YVLLSN+YA   +W      R+ M  KG+
Sbjct: 850 LLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGV 909

Query: 534 KKMPGAS-VEMNDQVQ 548
           KK PG S +E+ + + 
Sbjct: 910 KKEPGQSWIEVKNSIH 925



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 117/474 (24%), Positives = 225/474 (47%), Gaps = 42/474 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           +KLH+QI+      +N  +  KL+  Y   G +     VFDE+  + +  +N +I+   +
Sbjct: 88  RKLHSQIL-KLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELAS 146

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC-SGSNSLLVGLQIHCSVVKVGLDYNLF 166
             L      ++  M      P+  T+  VL+AC  GS +  V  QIH  ++  GL  +  
Sbjct: 147 RSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTI 206

Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG---------------- 210
             N L+ +Y + G +  ARRV + +  KD  +W +M++G ++N                 
Sbjct: 207 VCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLG 266

Query: 211 ------RFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL-----------SVK 253
                  F   L  C+++ESL I      +   L   ++T   N L           S +
Sbjct: 267 IMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAE 326

Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
            +F  +  ++ V++N +I   +      +A++L+ +M++ G+EP++ ++AS++ AC    
Sbjct: 327 HIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDG 386

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
            L  G+++H Y  +     N ++E AL+++YAKC  +  A   F +   ++VV W  M+ 
Sbjct: 387 TLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLV 446

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
           AYG+     ++  +F +M +  + P+   + S+L  C   G LE G    +I ++  K  
Sbjct: 447 AYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE---QIHSQIIKTS 503

Query: 434 PRIEHFAC--LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
            ++  + C  L+D+  + GK++ A+D++ +   + +   W +++A    Y N D
Sbjct: 504 FQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAGYTQY-NFD 555



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 184/422 (43%), Gaps = 41/422 (9%)

Query: 125 GFDPDCYTYPCVLKACSGSN-SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183
           G  P+  T   +L+ C  +N SL  G ++H  ++K+G D N      L+  Y   G L  
Sbjct: 62  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDG 121

Query: 184 ARRVLNDMPSKDVVTWNSMVAGYA----------------------QNGRFDEALDVCR- 220
           A +V ++MP + + TWN M+   A                        G F   L+ CR 
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRG 181

Query: 221 --------EMESLRIKPDADTMASLL--PSVTNTSPENVLS-VKEMFLKLDNKNLVSWNV 269
                   E    RI       ++++  P +   S    +   + +F  L  K+  SW  
Sbjct: 182 GSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVA 241

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           MI+  + N    EA+ L+  M V GI P   + +SVL AC  + +L +G ++H  V +  
Sbjct: 242 MISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 301

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
              +  + NALV +Y   GSL  A  +F  M  +D V++ ++I+     G G  A+ LF 
Sbjct: 302 FSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 361

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE-QYKLVPRIEHFACLVDLLGR 448
           +M + GL PDS    S++ ACS  G L  G+      T+  +    +IE    L++L  +
Sbjct: 362 RMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIE--GALLNLYAK 419

Query: 449 AGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNM--DIGILAADHIFHLAPNQSGYYV 506
              +E A +   +  +E N  +W  ++ A  L  ++     I     I  + PNQ  Y  
Sbjct: 420 CSDIETALNYFLETEVE-NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPS 478

Query: 507 LL 508
           +L
Sbjct: 479 IL 480



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 4/143 (2%)

Query: 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL-LGRKIHRYVER 327
           + +++  + S     +D    +E  GI PN  ++  +L  C   +  L  GRK+H  + +
Sbjct: 40  ISVSISEDESFQENGID---SVENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILK 96

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
                N  L   L+D Y   G L  A  VFD+M  + + +W  MI              L
Sbjct: 97  LGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCL 156

Query: 388 FSKMLMSGLCPDSIAFVSVLSAC 410
           F +M+   + P+   F  VL AC
Sbjct: 157 FGRMVNENVTPNEGTFSGVLEAC 179


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 168/545 (30%), Positives = 286/545 (52%), Gaps = 52/545 (9%)

Query: 54  IIINQHLHSNPSIGLKLMRTYG--ACGQMVDT----------RHVFDEITNKNVVFFNVL 101
           +I+  H H      +KL   Y    C  +VD             +F  + NK+ V FN L
Sbjct: 158 VIVQIHTHV-----IKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSL 212

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           +  Y N  L  +A+ ++  +   G  P  +T+  +L A  G +    G Q+H  V+K   
Sbjct: 213 MTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNF 272

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
            +N+F GN L+  Y K   + E  ++  +MP  D +++N ++  YA NG+F E+ D+ R+
Sbjct: 273 VWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRK 332

Query: 222 MESLRIKPDADTMASLLPSVTNT----------------------SPENVL--------- 250
           ++  R        A+LL   T++                        EN L         
Sbjct: 333 LQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNG 392

Query: 251 --SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
               +++F  +  K+ V W  MI+ Y       E ++++  M   G+  +  + AS+L A
Sbjct: 393 DKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRA 452

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C +L+++ LGR++H  + R     N+   +AL+D YAKCG +T+A   F +M  ++ VSW
Sbjct: 453 CANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSW 512

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            ++ISAY  +G     +  F +M+ SG  PDS++F+SVLSACSH G +EE  ++F  MT+
Sbjct: 513 NALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQ 572

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
            Y++ P+ EH+  +VD+L R G+ +EA  L+ +MP EP+E +W S++ +C ++ N ++  
Sbjct: 573 IYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAK 632

Query: 489 LAADHIFHLAP-NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
            AAD +F++     +  Y+ +SNIYA AG+W +V +V+K M  +G++K+P  S VE+  Q
Sbjct: 633 KAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQ 692

Query: 547 VQIIA 551
             + +
Sbjct: 693 THVFS 697



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/470 (28%), Positives = 226/470 (48%), Gaps = 37/470 (7%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRT-YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +HA  + +Q + +  +I L +M + +   G++   R +FD +  +  V + +LI  Y+ +
Sbjct: 60  VHAHQVFDQ-MPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQS 118

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
               +A  +Y +M   G +PD  T   +L       +  V +QIH  V+K+G +YNL   
Sbjct: 119 NQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVC 178

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           N LV  Y K  CL  A ++   M +KD VT+NS++ GY+  G  +EA+++  E+ +  IK
Sbjct: 179 NSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIK 238

Query: 229 PDADTMASLLPSV------------------TN---------------TSPENVLSVKEM 255
           P   T A+LL +                   TN               +  + V  V ++
Sbjct: 239 PSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKL 298

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F ++   + +S+NV+I  YA N    E+ DL+ +++    +      A++L        L
Sbjct: 299 FXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNL 358

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
            +GR+IH            R+ENALVDMYAKC    EA+ +FD + C+  V WT+MISAY
Sbjct: 359 RMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAY 418

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
              G+  + + +FS M  +G+  D   F S+L AC++   +  GR    ++      +  
Sbjct: 419 VQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRS-GFMSN 477

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           +   + L+D   + G + +A     +MP E N   W +L++A     N+D
Sbjct: 478 VYSGSALLDTYAKCGCMTDAIKSFGEMP-ERNSVSWNALISAYAQNGNVD 526



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 170/402 (42%), Gaps = 68/402 (16%)

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDV--------------- 196
           I   +VK G + N    N  V  + + G L  A +V + MP+K+                
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 197 ----------------VTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
                           V+W  ++ GY Q+ +  EA  +  +M    I+PD  T+ +LL  
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSG 149

Query: 241 VTNTSPENVLS---------------------------------VKEMFLKLDNKNLVSW 267
                 +NV+                                    ++F  + NK+ V++
Sbjct: 150 FGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTF 209

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
           N ++  Y+N  +  EA++L+L++   GI+P+  + A++L A   L     G+++H +V +
Sbjct: 210 NSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLK 269

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
                N+ + NAL+D Y+K   + E   +F +M   D +S+  +I++Y  +GQ  ++  L
Sbjct: 270 TNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDL 329

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVDLL 446
           F K+  +        F ++LS  + +  L  GR  + + +T       R+E+   LVD+ 
Sbjct: 330 FRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVEN--ALVDMY 387

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
            +    +EA  +   +  +     W ++++A       + GI
Sbjct: 388 AKCNGDKEAQKIFDNIACKSTVP-WTAMISAYVQKGKHEEGI 428


>gi|414587316|tpg|DAA37887.1| TPA: hypothetical protein ZEAMMB73_488455 [Zea mays]
          Length = 622

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 180/550 (32%), Positives = 287/550 (52%), Gaps = 63/550 (11%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +L +   ++ L +LHA+II+   LH++ ++   L R   AC  +        E  +    
Sbjct: 88  LLGRCCTVRCLAQLHARIIL-LGLHNHHAL---LARFTTACDAL--------ECPSVAAS 135

Query: 97  FFNVLIRSYV------NNYLYYDALHVYKNMSVHGFD-------PDCYTYPCVLKACSGS 143
           F   L  S+       N  L   A H   + ++  F+       PD +++PC+L+AC+  
Sbjct: 136 FIAALTDSHAAPLRLRNAVLASLARHAPLHAALTEFNLLRQAALPDSFSFPCLLRACARV 195

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC----------------------- 180
           + L  G  +H + +++G+  +LF    L+  YG+CG                        
Sbjct: 196 SCLPAGRALHAAAIRLGVHADLFIRTALIQFYGRCGVADAARALFYQIDIPSEVSWTAII 255

Query: 181 --------LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
                   + +AR + + MP ++VV WN MV GY + G  + A  +  EM     +  A 
Sbjct: 256 VAYVNNGGIIDARALFDTMPQRNVVHWNVMVDGYVKCGDLEGARRLFDEMP----ERTAT 311

Query: 233 TMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
              SL+         N+ + + +F KL+++++ SW+ MI+ YA N  P EA+  + + + 
Sbjct: 312 ACTSLIGGYAKAG--NMEAARLLFDKLEDRDVFSWSAMISGYAQNGYPGEALRTFDEFQG 369

Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ-PNLRLENALVDMYAKCGSLT 351
            GI P+ + V  ++ AC  L  + L   I  Y+ +  +   N  +   LV+M AKCG+L 
Sbjct: 370 QGIHPDELVVVGLMSACSQLGNIRLASWIEDYITKYSIDMNNAHVLAGLVNMNAKCGNLE 429

Query: 352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
            A  +F+ M  +DV S+ S++  Y + G    AV LFS+ML+ GL PD+  F  VL+AC 
Sbjct: 430 RATFLFESMPVRDVFSYCSLMQGYCLHGSADKAVKLFSRMLLEGLTPDNAVFTIVLTACC 489

Query: 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIW 471
           HAGL+EEG+ +F IM   Y +VP  EH+ACLV+LLGR G +E+AY LI  MP +P+   W
Sbjct: 490 HAGLVEEGKKFFDIMKNVYLMVPSGEHYACLVNLLGRCGMLEDAYWLIMSMPGKPHPGAW 549

Query: 472 GSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531
           G+L+  C L+ N+++G +AA  +F + P+ +G YV LSN+YA   RWGDV  VR  M  K
Sbjct: 550 GALLGGCKLHCNIELGKIAAKKLFEIEPDNAGNYVSLSNMYANIDRWGDVSEVRAEMTGK 609

Query: 532 GIKKMPGASV 541
            I K+ G ++
Sbjct: 610 RITKIAGRTL 619


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 170/519 (32%), Positives = 286/519 (55%), Gaps = 58/519 (11%)

Query: 68  LKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD 127
           + L   Y A G   + R +FDE+  +++  +N +I  Y  +    +AL +   +      
Sbjct: 125 IHLYSRYKAVG---NARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM--- 178

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
            D  T   +L AC+ +     G+ IH   +K GL+  L               L++ ++V
Sbjct: 179 -DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESEL---------------LRDCQKV 222

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASL---------- 237
            + M  +D+++WNS++  Y  N +   A+ + +EM   RI+PD  T+ SL          
Sbjct: 223 FDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDI 282

Query: 238 ----------------LPSVTNTSPENVL--------SVKEMFLKLDNKNLVSWNVMIAV 273
                           L  +T  +   V+        S + +F  L N +++SWN +I+ 
Sbjct: 283 RACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISG 342

Query: 274 YANNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
           YA N   +EA+++Y  ME  G I  N  +  SVLPAC    AL  G K+H  + +  L  
Sbjct: 343 YAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYL 402

Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
           ++ +  +L DMY KCG L +A ++F Q+   + V W ++I+ +G  G G  AV LF +ML
Sbjct: 403 DVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEML 462

Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
             G+ PD I FV++LSACSH+GL++EG++ F++M   Y + P ++H+ C+VD+ GRAG++
Sbjct: 463 DEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQL 522

Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
           E A   IK M ++P+  IWG+L++AC ++ N+D+G +A++H+F + P   GY+VLLSN+Y
Sbjct: 523 ETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMY 582

Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQII 550
           A AG+W  V  +R   + KG++K PG +S+E++++V++ 
Sbjct: 583 ASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVF 621



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 230/452 (50%), Gaps = 40/452 (8%)

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK-NMSVHGFDPDCYTYPCVLKACSGS 143
           H FD I N++V  +N++I  Y       + +  +   M   G  PD  T+P VLKAC   
Sbjct: 40  HTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC--- 96

Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
            +++ G +IHC  +K G  ++++    L+ +Y +   +  AR + ++MP +D+ +WN+M+
Sbjct: 97  RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMI 156

Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN--------------- 248
           +GY Q+G   EAL +   + ++    D+ T+ SLL + T     N               
Sbjct: 157 SGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLE 212

Query: 249 ---VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA---ISV 302
              +   +++F ++  ++L+SWN +I  Y  N  P  A+ L+ +M +  I+P+    IS+
Sbjct: 213 SELLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISL 272

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKK-LQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           AS+L   GD+ A    R +  +  RK     ++ + NA+V MYAK G +  AR VF+ + 
Sbjct: 273 ASILSQLGDIRAC---RSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 329

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG-LCPDSIAFVSVLSACSHAGLLEEG- 419
             DV+SW ++IS Y  +G   +A+ +++ M   G +  +   +VSVL ACS AG L +G 
Sbjct: 330 NTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGM 389

Query: 420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
           + + +++     L   +     L D+ G+ G++E+A  L  Q+P   N   W +L+A   
Sbjct: 390 KLHGRLLKNGLYLDVFV--VTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHG 446

Query: 480 LYSNMDIGILAADHIFH--LAPNQSGYYVLLS 509
            + + +  ++    +    + P+   +  LLS
Sbjct: 447 FHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 478



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 102/449 (22%), Positives = 195/449 (43%), Gaps = 55/449 (12%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           IL +  DI+  + +    +       + +IG  ++  Y   G +   R VF+ + N +V+
Sbjct: 275 ILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVI 334

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
            +N +I  Y  N    +A+ +Y  M   G    +  T+  VL ACS + +L  G+++H  
Sbjct: 335 SWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGR 394

Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
           ++K GL  ++F    L  MYGKCG L++A  +   +P  + V WN+++A +  +G  ++A
Sbjct: 395 LLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKA 454

Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD---NKNLVSWNVMIA 272
           + + +EM    +KPD  T  +LL + +++   +        ++ D     +L  +  M+ 
Sbjct: 455 VMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVD 514

Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY---VERKK 329
           +Y        A+     M    ++P+A    ++L AC     + LG+    +   VE + 
Sbjct: 515 MYGRAGQLETALKFIKSMS---LQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEH 571

Query: 330 LQPNLRLENALVDMYAKCG---SLTEARTVFDQMRCQDVVSWTSM-----ISAYGMSGQG 381
           +  ++ L N    MYA  G    + E R++      +    W+SM     +  +    Q 
Sbjct: 572 VGYHVLLSN----MYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQT 627

Query: 382 Y--------DAVALFSKMLMSGLCPD------------------------SIAFVSVLS- 408
           +        +  AL +K+ M G  PD                        +IAF  + + 
Sbjct: 628 HPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATP 687

Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
           A +   + +  RY  K  T++ +L P+ +
Sbjct: 688 AKTTIRIFKNLRYEIKTQTKEERLTPQTQ 716



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 130/314 (41%), Gaps = 52/314 (16%)

Query: 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD-VCREMESLRIKPDADTMASLLPS 240
           K      + + ++DV  WN M++GY + G   E +      M S  + PD  T  S+L +
Sbjct: 36  KSKMHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKA 95

Query: 241 VTNTSPEN------------------------------VLSVKEMFLKLDNKNLVSWNVM 270
                  N                              V + + +F ++  +++ SWN M
Sbjct: 96  CRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAM 155

Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEP-NAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           I+ Y  +    EA+ L      +G+   ++++V S+L AC +      G  IH Y  +  
Sbjct: 156 ISGYCQSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHG 210

Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
           L+  L               L + + VFD+M  +D++SW S+I AY ++ Q   A++LF 
Sbjct: 211 LESEL---------------LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQ 255

Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
           +M +S + PD +  +S+ S  S  G +   R        +   +  I     +V +  + 
Sbjct: 256 EMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKL 315

Query: 450 GKVEEAYDLIKQMP 463
           G V+ A  +   +P
Sbjct: 316 GLVDSARAVFNWLP 329


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 175/514 (34%), Positives = 281/514 (54%), Gaps = 36/514 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG--FD 127
           L+  Y  CG + +   +F +I NK+VV +N +I +Y      ++   + + M +     +
Sbjct: 354 LIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELME 413

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
            +  T   +L AC   + LL    +H   ++    Y     N  +A Y KCG L  A  V
Sbjct: 414 VNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHV 473

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS------- 240
              M +K V +WN+++ G+AQNG   +ALD   EM  L I PD  ++ SLL +       
Sbjct: 474 FFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLL 533

Query: 241 ----------------VTNTSPENVLSV----------KEMFLKLDNKNLVSWNVMIAVY 274
                           + +    ++LS+          +  F ++ +KN V WN M++ Y
Sbjct: 534 QYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGY 593

Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
           + N +P EA+ L+ QM   G+EP+ I++AS+L AC  LSAL LG+++H +  +  L  + 
Sbjct: 594 SQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDN 653

Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
            +  +L+DMYAK G L  ++ +F+++  ++V SW  MI+ +G+ GQG  AV LF  M  S
Sbjct: 654 FVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRS 713

Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
              PD   F+ VL AC HAGL+ EG  Y   M   YKL P +EH+AC++D+LGRAG++ E
Sbjct: 714 DKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNE 773

Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
           A + I +MP EP+ +IW SL+++   Y ++++G   A+ +  L  N++  Y+LLSN+YA 
Sbjct: 774 ALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYAT 833

Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           AG+W  V+ VR+ M    ++K  G S +E+  +V
Sbjct: 834 AGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKV 867



 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 170/568 (29%), Positives = 277/568 (48%), Gaps = 76/568 (13%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           +Y +++  +KL   + ++     +  +  +L+  Y  CG  +++R VFD + NKN+  +N
Sbjct: 119 QYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWN 178

Query: 100 VLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
            L+  YV N LY +A+H +  + SV  F PD +T+PC++KAC+G   + +G  +H   VK
Sbjct: 179 ALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVK 238

Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
           +GL  +LF GN ++A+YGKCG L EA  + + MP +++++WNS++ G+++NG + EA   
Sbjct: 239 MGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRA 298

Query: 219 CREM--ESLRIKPDADTMASLLPSVTNTSPENV------LSVKE---------------- 254
            R +      + PD  TM +LLP  +     +V      ++VK                 
Sbjct: 299 FRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMY 358

Query: 255 -----------MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY--LQMEVHGIEPNAIS 301
                      +F K++NK++VSWN MI  Y+      E  DL   + ME   +E N ++
Sbjct: 359 SKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVT 418

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           + ++LPAC + S LL  R +H Y  R   Q    + NA +  YAKCGSL  A  VF  M 
Sbjct: 419 ILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMN 478

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR- 420
            + V SW ++I  +  +G    A+  + +M   G+ PD  + VS+L AC   GLL+ G+ 
Sbjct: 479 TKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKE 538

Query: 421 ---YYFKIMTEQYKLVP---RIEHFACLVDLLGR------------------AGKVE--- 453
              +  +   E    V       +F C     GR                  +G  +   
Sbjct: 539 IHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNEL 598

Query: 454 --EAYDLIKQM---PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN-QSGYYVL 507
             EA  L +QM    +EP+E    S++ AC   S + +G     H F L  +     +V 
Sbjct: 599 PNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLG--KEVHCFALKNSLMEDNFVA 656

Query: 508 LS--NIYAKAGRWGDVKRVRKFMNSKGI 533
            S  ++YAK+G  G  +R+   +N K +
Sbjct: 657 CSLMDMYAKSGFLGHSQRIFNRLNGKEV 684



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 103/193 (53%), Gaps = 1/193 (0%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           K++H  ++ N  L  N  + + L+  Y  C +    R  F+ + +KN V +N ++  Y  
Sbjct: 537 KEIHGFVLRNG-LEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQ 595

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N L  +AL +++ M   G +PD      +L ACS  ++L +G ++HC  +K  L  + F 
Sbjct: 596 NELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFV 655

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
              L+ MY K G L  ++R+ N +  K+V +WN M+ G+  +G+ ++A+++  +M+    
Sbjct: 656 ACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDK 715

Query: 228 KPDADTMASLLPS 240
           +PD  T   +L +
Sbjct: 716 QPDRFTFLGVLQA 728



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 90/178 (50%), Gaps = 6/178 (3%)

Query: 301 SVASVLPACGDLSALLLGRKIHRYV-ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359
           ++  +L  CG    + +GRK+   +    +   +  L   L+ MY+ CG   E+R VFD+
Sbjct: 109 AMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDR 168

Query: 360 MRCQDVVSWTSMISAYGMSGQGYD-AVALFSKML-MSGLCPDSIAFVSVLSACSHAGLLE 417
           +  +++  W +++S Y +  + YD A+  F +++ ++   PD+  F  ++ AC+    + 
Sbjct: 169 LLNKNLFQWNALVSGY-VRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIH 227

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
            G+     M  +  L+  +     ++ L G+ G ++EA +L  +MP E N   W SL+
Sbjct: 228 LGKSVHG-MAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMP-EQNLISWNSLI 283


>gi|125524780|gb|EAY72894.1| hypothetical protein OsI_00769 [Oryza sativa Indica Group]
          Length = 569

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 178/566 (31%), Positives = 294/566 (51%), Gaps = 76/566 (13%)

Query: 42  PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF-FNV 100
           P + +    HA   ++  LH+   +  +++  Y   G+  D R VFD +      F +N 
Sbjct: 24  PRVASAVHAHA---LHLGLHAQHDVAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNA 80

Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA--------------------- 139
           LI +Y +      A   +  M+  G  PD  T+  +L A                     
Sbjct: 81  LISAYSSGCDPDAARDAFARMAAAGTRPDAVTWTALLSAHARSGKHADVLQLFGEMQRSG 140

Query: 140 CSGSN----------------SLLVGLQIH-CSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
           C G+                 +L  G  IH C VVK  +   LF  N L+ MYGK G + 
Sbjct: 141 CEGNAESMAVALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMD 200

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
           +A++   D  +K+ VTWN+++  YA  G  DEALDV  +ME +       T+A       
Sbjct: 201 DAKKAFRDATAKNTVTWNTLITSYAAAGLCDEALDVLAQMEQI-----GGTVA------- 248

Query: 243 NTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
                               N+VSW+ +I  +A++     A++L+ +M+   + PN +++
Sbjct: 249 -------------------PNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPNVVTM 289

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
           A+VL AC DL AL LGR++H +  + +L  +  +EN L++MYAKCG ++ AR VFD M+ 
Sbjct: 290 ATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMKT 349

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           +D++SW SM++ YGM G   +A+ALF+ M  + + PD + FV+VLSAC HAG + EGR  
Sbjct: 350 RDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGRRL 409

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           F  M   +K+ P +EH+ C+V LLGRAG + +A +L++ MP+ P+  +WG+L+ +C ++ 
Sbjct: 410 FDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSCRIHG 469

Query: 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-V 541
           +  +      ++       +G ++L++N+YA  G W + K+VR      G++K PG S +
Sbjct: 470 DAAMAEATIANVLQSEDQSTGNHMLITNLYAMCGMWDESKKVRVMTKEAGLRKNPGQSWI 529

Query: 542 EMNDQVQIIALPLRSSKCLTTGPKNV 567
           E++++V  +A    S+    TG ++V
Sbjct: 530 EVDNKV--VAFAAGSAPPNLTGAEDV 553



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 152/330 (46%), Gaps = 49/330 (14%)

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           P+ YT P  L+A +   S  V   +H   + +GL         ++A Y + G   +ARRV
Sbjct: 9   PNSYTLPLALRAAA---SPRVASAVHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRV 65

Query: 188 LNDM-PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP 246
            + M P +    WN++++ Y+     D A D    M +   +PDA               
Sbjct: 66  FDAMPPGRTTFHWNALISAYSSGCDPDAARDAFARMAAAGTRPDA--------------- 110

Query: 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
                             V+W  +++ +A +   A+ + L+ +M+  G E NA S+A  L
Sbjct: 111 ------------------VTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMAVAL 152

Query: 307 PAC---GDLSALLLGRKIHR-YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            AC   GDL AL  G+ IH   V +  +   L + N+L+ MY K G + +A+  F     
Sbjct: 153 SACPYAGDL-ALAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATA 211

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG--LCPDSIAFVSVLSACSHAGLLEEGR 420
           ++ V+W ++I++Y  +G   +A+ + ++M   G  + P+ +++ +V+   + +G  +   
Sbjct: 212 KNTVTWNTLITSYAAAGLCDEALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRAL 271

Query: 421 YYFKIMTEQYKLVPRIEHFACL----VDLL 446
             F+ M +Q+ L P +   A +    VDLL
Sbjct: 272 ELFRRMQQQW-LSPNVVTMATVLSACVDLL 300


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 157/448 (35%), Positives = 258/448 (57%), Gaps = 27/448 (6%)

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           P   ++  +L++C+ S    +G   HC ++K+G +Y++    GL+  Y K G LK A+RV
Sbjct: 8   PSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRV 67

Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDV-------------------CR--EMESLR 226
              MP +DVV  N+M++  +++G  +EA ++                   C+  ++ S R
Sbjct: 68  FMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDINSAR 127

Query: 227 IKPDADTMASLLP--SVTN--TSPENVLSVKEMFLKLDN-KNLVSWNVMIAVYANNSMPA 281
           +  D + +  ++   ++ +     + +++ +E+FL + + +N V+WN MI+ Y       
Sbjct: 128 LMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFG 187

Query: 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341
            A+ ++ QM+   ++P  +++ S+L AC  L AL +G  IH Y+  K+L+ ++ L NAL+
Sbjct: 188 TAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALI 247

Query: 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
           DMY KCG+L  A  VF  +  +++  W S+I   GM+G+G +A+A F  M   G+ PD +
Sbjct: 248 DMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGV 307

Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
            FV +LS CSH+GLL  G+ YF  M   Y L P +EH+ C+VDLLGRAG ++EA +LI+ 
Sbjct: 308 TFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRA 367

Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
           MPM+PN  + GSL+ AC ++ +  +G      +  L P   G YV LSN+YA   RW DV
Sbjct: 368 MPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDV 427

Query: 522 KRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
              RK M  +G+ K PG +S+E+N+ V 
Sbjct: 428 NTCRKLMIKRGVHKTPGCSSIEVNNIVH 455



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 117/250 (46%), Gaps = 13/250 (5%)

Query: 79  QMVDTRHVFDEI-TNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           Q+V  + +F  + + +N V +N +I +YV    +  A+ +++ M      P   T   +L
Sbjct: 153 QLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLL 212

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
            AC+   +L +G  IH  +    L  ++  GN L+ MY KCG L+ A  V + +  K++ 
Sbjct: 213 SACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIF 272

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
            WNS++ G   NGR +EA+     ME   IKPD  T   +L   +++    +LS  + + 
Sbjct: 273 CWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSG---LLSAGQRYF 329

Query: 258 KLD------NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
                       +  +  M+ +        EA++L   M    ++PN++ + S+L AC  
Sbjct: 330 SEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMP---MKPNSMVLGSLLRACQI 386

Query: 312 LSALLLGRKI 321
                LG ++
Sbjct: 387 HKDTKLGEQV 396



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 5/152 (3%)

Query: 55  IINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114
           I  + L  +  +G  L+  Y  CG +     VF  ++ KN+  +N +I     N    +A
Sbjct: 231 IRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEA 290

Query: 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV-GLDYNLFNGNGLVA 173
           +  +  M   G  PD  T+  +L  CS S  L  G +    ++ V GL+  + +   +V 
Sbjct: 291 IAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVD 350

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
           + G+ G LKEA  ++  MP K     NSMV G
Sbjct: 351 LLGRAGYLKEALELIRAMPMKP----NSMVLG 378


>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 595

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 180/543 (33%), Positives = 288/543 (53%), Gaps = 49/543 (9%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD---TRHVFDEITNKN 94
           L+ + ++  L ++ +Q+I++  L  +P      ++    C   V       +FD + + +
Sbjct: 14  LESWKNLHELNQVLSQLIVSG-LSQHPLFATSAIKKL--CSHSVTFPRATFLFDHLHHPD 70

Query: 95  VVFFNVLIRSYVNNYLYYDALHVYK-NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
               N +IR+Y     +  AL  Y   M      P+ YT+P ++K C+   S   GL+ H
Sbjct: 71  AFHCNTIIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCTDIGSFREGLKGH 130

Query: 154 CSVVKVGLDYNLFNGNGLVAMYG-------------------------------KCGCLK 182
             +VK G   +LF  N L+ MY                                K G + 
Sbjct: 131 ARIVKFGFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNSMIDGYVKNGEIG 190

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
            AR+V N+MP +DV++WN ++AGY   G  D A ++   +   R     + M      V 
Sbjct: 191 AARKVFNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIPE-RDAVSWNCMIDGCARVG 249

Query: 243 NTSPENVLSVKEMFLKLDN--KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE--PN 298
           N S    L+VK  F ++    +N+VSWN ++A++A      E + L+ +M V G E  PN
Sbjct: 250 NVS----LAVK-FFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKM-VEGREAVPN 303

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
             ++ SVL AC +L  L +G  +H ++    ++P++ L   L+ MYAKCG++  A+ VFD
Sbjct: 304 EATLVSVLTACANLGKLSMGMWVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVFD 363

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
           +M  + VVSW SMI  YG+ G G  A+ LF +M  +G  P+   F+SVLSAC+HAG++ E
Sbjct: 364 EMPVRSVVSWNSMIMGYGLHGIGDKALELFLEMEKAGQQPNDATFISVLSACTHAGMVME 423

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
           G +YF +M   YK+ P++EH+ C+VDLL RAG VE + +LI+ +P++    IWG+L++ C
Sbjct: 424 GWWYFDLMQRVYKIEPKVEHYGCMVDLLARAGLVENSEELIRMVPVKAGSAIWGALLSGC 483

Query: 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
             + + ++G + A     L P   G Y+LLSN+YA  GRW DV+ VR  +  KG++K   
Sbjct: 484 SNHLDSELGEIVAKRFIELEPQDIGPYILLSNMYAAKGRWDDVEHVRLMIKEKGLQKEAA 543

Query: 539 ASV 541
           +S+
Sbjct: 544 SSL 546


>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
 gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
          Length = 589

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 174/492 (35%), Positives = 273/492 (55%), Gaps = 39/492 (7%)

Query: 89  EITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLV 148
           E  +++   +N L+R +         L+ +  M      PD YT+P VLKAC  +    V
Sbjct: 76  EEASRHAFPWNTLVRLHAAASPRRSLLY-FSRMRRAAVAPDAYTFPAVLKACGCAPGCRV 134

Query: 149 GLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQ 208
           GL +H   V+ GLD +LF  N L++ Y + G  +  R+V  D   +D+V+WNSMVAGY  
Sbjct: 135 GLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVF-DHGVRDLVSWNSMVAGYVG 193

Query: 209 NGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWN 268
            G  D A D+  EM     + DA + A+++      +   V   +E+F ++ +++LV WN
Sbjct: 194 CGEVDLAQDLFDEMR----QRDAFSWATMIDGYGEMAG-GVDRARELFDQMPDRDLVCWN 248

Query: 269 VMIAVYANNSM-------------------------------PAEAVDLYLQMEVHGIEP 297
            MI  YA +                                 P EA++ + +M   GI+P
Sbjct: 249 SMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKP 308

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
           + ++    + AC  L AL  GR +H Y+E+KK+  ++ ++ AL+DMY KCG L  A+ +F
Sbjct: 309 DRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIF 368

Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
           + M  + VV+W  MI   G  G G DA+ LF++M       D ++ ++VL++C+HAGL+ 
Sbjct: 369 ESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVS 428

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           EG   F  M +   L P++EH+  L+DLLGRAG+V++A + I+ MPMEP   +WGSL+A+
Sbjct: 429 EGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLAS 488

Query: 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537
           C  +  +++  L+ + +  L  + SG YVLLSNIYA  G W DV R+RK M+++G+KK  
Sbjct: 489 CRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNI 548

Query: 538 GASV-EMNDQVQ 548
           G SV E++ Q+ 
Sbjct: 549 GRSVIEVDGQIH 560


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 174/539 (32%), Positives = 293/539 (54%), Gaps = 39/539 (7%)

Query: 60  LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYK 119
           LH++  +   L+  Y  C +    R+VF ++  ++VV +N ++  Y N+ +Y+ A+    
Sbjct: 131 LHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLL 190

Query: 120 NMSVHG-FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN---LFNGNGLVAMY 175
           +M  HG   P+  T   +L   +   +L  G  IH   ++  L+ N   +  G  L+ MY
Sbjct: 191 DMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMY 250

Query: 176 GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM------------- 222
            KC  L  A RV + MP ++ VTW++++ G+    R  EA ++ ++M             
Sbjct: 251 AKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSV 310

Query: 223 -ESLRIKPD-ADT-MASLLPSVTN--------TSPENVLS-------VKEMFLKLDN--- 261
             +LR+    AD  M + L ++          T+  ++LS       + E  +  D    
Sbjct: 311 ASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAV 370

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
           K+ +S+  +++    N    EA  ++ +M+   +EP+  ++ S++PAC  L+AL  G+  
Sbjct: 371 KDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCS 430

Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
           H  V  + L     + N+L+DMYAKCG +  +R VFD+M  +DVVSW +MI+ YG+ G G
Sbjct: 431 HGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLG 490

Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
            +A  LF  M   G  PD + F+ +++ACSH+GL+ EG+++F  MT +Y ++PR+EH+ C
Sbjct: 491 KEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYIC 550

Query: 442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501
           +VDLL R G ++EAY  I+ MP++ + R+WG+L+ AC ++ N+D+G   +  I  L P  
Sbjct: 551 MVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEG 610

Query: 502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRSSKC 559
           +G +VLLSNI++ AGR+ +   VR     KG KK PG S +E+N  +       +S  C
Sbjct: 611 TGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPC 669



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/439 (28%), Positives = 214/439 (48%), Gaps = 42/439 (9%)

Query: 78  GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
           GQ+   R VFD I   +   +N LIR+Y     ++ A+ +Y++M      P+ YT+P VL
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
           KACS    L  G  IH      GL  +LF    L+ +Y +C     AR V   MP +DVV
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESL-RIKPDADTMASLLP----------------- 239
            WN+M+AGYA +G +  A+    +M+    ++P+A T+ SLLP                 
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAY 227

Query: 240 ---SVTNTSPENVL---SVKEMFLKLDN-------------KNLVSWNVMIAVYANNSMP 280
              +    + E VL   ++ +M+ K                +N V+W+ +I  +      
Sbjct: 228 CLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRM 287

Query: 281 AEAVDLYLQMEVHGI-EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
            EA +L+  M V G+   +A SVAS L  C  L+ L +G ++H  + +  +  +L   N+
Sbjct: 288 TEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNS 347

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           L+ MYAK G + EA   FD++  +D +S+ +++S    +G+  +A  +F KM    + PD
Sbjct: 348 LLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPD 407

Query: 400 SIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
               VS++ ACSH   L+ G+  +  ++     L   I +   L+D+  + GK++ +  +
Sbjct: 408 IATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICN--SLIDMYAKCGKIDLSRQV 465

Query: 459 IKQMPMEPNERIWGSLVAA 477
             +MP   +   W +++A 
Sbjct: 466 FDKMPAR-DVVSWNTMIAG 483



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 8/237 (3%)

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           +++F ++   +  ++N +I  Y+       A+DLY  M    + PN  +   VL AC  L
Sbjct: 54  RQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSAL 113

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
             L  GR IH +     L  +L +  AL+D+Y +C     AR VF +M  +DVV+W +M+
Sbjct: 114 VDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAML 173

Query: 373 SAYGMSGQGYDAVA-LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YYFKIMT 427
           + Y   G  + A+A L       GL P++   VS+L   +  G L +G     Y  +   
Sbjct: 174 AGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACL 233

Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNM 484
           EQ +   ++     L+D+  +  ++  A  +   MP+  N+  W +L+    L   M
Sbjct: 234 EQNE--EQVLIGTALLDMYAKCKQLVYACRVFHGMPVR-NDVTWSALIGGFVLCDRM 287



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 11/167 (6%)

Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
           G L  AR VFD++   D  ++ ++I AY   G  + A+ L+  ML   + P+   F  VL
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
            ACS    L  GR           L   +     L+DL  R  +   A ++  +MPM  +
Sbjct: 108 KACSALVDLRAGR-TIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMR-D 165

Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFH------LAPNQSGYYVLL 508
              W +++A    Y+N  +   A  H+        L PN S    LL
Sbjct: 166 VVAWNAMLAG---YANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLL 209


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 168/505 (33%), Positives = 270/505 (53%), Gaps = 46/505 (9%)

Query: 44  IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH----VFDEITNKNVVFFN 99
           +K  K+ H Q+IIN   H  PS  L+ + ++ A     D  +    +    T   V  FN
Sbjct: 1   MKQFKEAHTQLIINGLTHPPPS--LRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLFN 58

Query: 100 VLIRSYVNNYL---YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
             IR +           ++ ++  M V    P+ +T+  + + CS   +  +G Q H  V
Sbjct: 59  TTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMV 118

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
           +K   + ++F  N ++  Y  CG L +AR V ++    DVV+WNSM+ G  +NG      
Sbjct: 119 IKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNG------ 172

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
                                          N+L    +F K+  +N +SWN+MI+ YA 
Sbjct: 173 -------------------------------NILEALSLFSKMTERNDISWNMMISGYAQ 201

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N  P EA+ L+ +M++   EPN+  + SVL AC  L AL  G  +H Y+ +K ++ +  L
Sbjct: 202 NGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSIL 261

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
             AL+DMYAKCGS+  A   F   R +DV ++T+ IS   M+G   +A+ LF +M   G+
Sbjct: 262 SAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGI 321

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PD +++++VL ACSHAG +E+G +YF  M++ + + P ++H+AC+VDLLGRAG +EEA 
Sbjct: 322 SPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAE 381

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
             +  MP++P+  IWG+L+ AC +Y N ++G      +     N  G Y+LLSNIYA++ 
Sbjct: 382 KFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSNIYAESM 441

Query: 517 RWGDVKRVRKFMNSKGIKKMPGASV 541
           +  D ++VRK M  + + ++PG S+
Sbjct: 442 KGEDAEQVRKTMRRRKVDRVPGCSL 466


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 171/524 (32%), Positives = 274/524 (52%), Gaps = 44/524 (8%)

Query: 28  LLSGDACNDILDKYPDIKTLKKLHAQIIINQHLH-SNPSIGLKLMRTYGACGQMVDTRHV 86
           +L+ D    +L      +   +LHA ++    L  ++ ++  +L R Y A G++  +  +
Sbjct: 286 VLTADRAVSLLTSCSTARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLAL 345

Query: 87  FDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL 146
                +   +F+   I ++ +      AL +  +M   G  P  +T    L AC G   L
Sbjct: 346 LRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRG---L 402

Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM-PSKDVVTWNSMVAG 205
             G  +H    K+ L  + +    L+ MY + G    AR + +DM P   VV+  +M+  
Sbjct: 403 SPGRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTC 462

Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
           YA  G  D+A                                     + +F  L  K+ V
Sbjct: 463 YADMGALDDA-------------------------------------RSLFDGLPTKDFV 485

Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
            WN MI  Y  +  P EA+ L+ +M   G+EP+ ++V  VL A   L  +  G+ +H YV
Sbjct: 486 CWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYV 545

Query: 326 ER-KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
           +  +++Q ++R+  AL+DMY KCGSL +A  VF  +  +D+V W +MI+ Y M G    A
Sbjct: 546 KNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKA 605

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           + +F +    GL P  I F+ +L+ACSH+G++EEGR +F+ M  +Y + P+IEH+ C+VD
Sbjct: 606 LEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVD 665

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY 504
           LLGRAG ++EA+ L++ M + P+  +W SL+AAC L+ NM +G   AD++       SG 
Sbjct: 666 LLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGM 725

Query: 505 YVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
           Y+LLSNIYA  G WG+V RVR  M + GI+K PG +S+E++ +V
Sbjct: 726 YILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREV 769


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 181/578 (31%), Positives = 305/578 (52%), Gaps = 70/578 (12%)

Query: 36  DILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNV 95
           D+L     I  LK++ A III ++L   P    +L+        +   R VFD+I + + 
Sbjct: 7   DLLHCSLPINQLKQIQALIII-KYLSLTPLFIRRLLNA----SFIQYARQVFDQIPHPDQ 61

Query: 96  VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
                 I +Y    L  +AL  + +M  +     C+T P + K+C+   ++ VG Q+H  
Sbjct: 62  GVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSL 121

Query: 156 VVKVGLDYNLFNGNGLVAMYGK-------------------------------CGCLKEA 184
           V++ G   ++F  N L+  Y K                                G +  A
Sbjct: 122 VIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAA 181

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           R + + M  + +V+WN+M++ YAQNG + +   + + M+    +P+  T+A++L      
Sbjct: 182 RELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKL 241

Query: 245 SP-ENVLSVK-------------------EMFLK-------------LDNKNLVSWNVMI 271
              E  L +K                   EM++K             +  +++V+W+ MI
Sbjct: 242 GDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMI 301

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           A YA N    EA++L+  M+   I+PN +++ SVL AC  L ++  G +I  YVE + L 
Sbjct: 302 AGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLI 361

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            N+ + +AL+ MY+KCG++ +AR +FD++  +D V+W SMI    ++G   DA+AL+++M
Sbjct: 362 SNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRM 421

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
               + P++I FV +++AC+HAG +E G  +F+ M   + + P IEHFAC+VDL  R+G+
Sbjct: 422 KEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGR 481

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
           + +AY+ I +M +EPN  IWG+L++A  ++ N+++  LA   +  L P+ SG YV+LSNI
Sbjct: 482 LIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNI 541

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           YA AGRW +  +VRK M  K ++K    S VE+ D+V 
Sbjct: 542 YASAGRWQEALKVRKLMKDKRVQKAAAYSWVEVEDRVH 579



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 218/452 (48%), Gaps = 43/452 (9%)

Query: 15  KPVQALVLSTQYTLLSGDAC-NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRT 73
           K V +LV+  +Y   S   C N +++ Y  I  L    A++I +  L  +      L+  
Sbjct: 116 KQVHSLVI--RYGFHSSVFCQNALINFYAKINDLGS--AELIFDGILVKDTIAYNCLISA 171

Query: 74  YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
           Y   G+++  R +FD++ ++++V +N +I  Y  N  Y+    +++ M     +P+  T 
Sbjct: 172 YSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITL 231

Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
             VL  C+    L +GL+I        L  N+     ++ MY KCG + + R V + M  
Sbjct: 232 ATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMAR 291

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS------------- 240
           +DVVTW++M+AGYAQNGR +EAL++   M+S +IKP+  T+ S+L +             
Sbjct: 292 RDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERI 351

Query: 241 ---------VTN-----------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                    ++N           +   N++  +++F KL  ++ V+WN MI   A N   
Sbjct: 352 GSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFA 411

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENA 339
            +A+ LY +M+   ++PN I+   ++ AC     + LG +  R +     + PN+     
Sbjct: 412 EDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFAC 471

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
           +VD++ + G L +A     +M  + +VV W +++SA  +     +   L  K L+  L P
Sbjct: 472 IVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIH-LNVELAELAGKKLLE-LEP 529

Query: 399 DSIAFVSVLSAC-SHAGLLEEGRYYFKIMTEQ 429
           D+     +LS   + AG  +E     K+M ++
Sbjct: 530 DNSGNYVILSNIYASAGRWQEALKVRKLMKDK 561


>gi|302766669|ref|XP_002966755.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
 gi|300166175|gb|EFJ32782.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
          Length = 811

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 173/502 (34%), Positives = 271/502 (53%), Gaps = 40/502 (7%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           + +HAQI  ++ L  +  +G  L+  YG C ++   R  F++IT KN+V +NV+I +Y  
Sbjct: 149 RAIHAQIS-SRELDHHTHLGNGLVNMYGRCKELHRARKAFEKITAKNLVSWNVIIGAYAQ 207

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
                 A+ +++ M   G   D  T+  VL AC G  +     +IH  +   GL++++F 
Sbjct: 208 EGHRGHAMELFQRMDPEGVAADAVTFLHVLDACGGVEAAGDVRRIHKKLELSGLEWDVFV 267

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            + LV  YGKCGCL EA+RV + MP K+ VT  SM+A YAQ+G  +EAL++ REMES   
Sbjct: 268 ASSLVNAYGKCGCLAEAKRVFDTMPLKNTVTMTSMLAAYAQHGLGEEALEIYREMESQGR 327

Query: 228 KPDADTMASLLPSVTN--------------------TSPENVL---------------SV 252
           K D  T  S L + ++                      P+ VL               + 
Sbjct: 328 KADRVTFISALDACSSIGALSQGRAIHSRLLVSGIIQQPDVVLGTALLNMYGRCGVLDAA 387

Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
           K +F  + +KN ++WN ++  YA      EA++LY  M+    +PN+++  ++L AC  +
Sbjct: 388 KSLFDGMADKNTITWNALMGSYAQWGYGKEALNLYHSMDA---QPNSLTFLAMLTACSTV 444

Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
            ALL GR  H  +     +  + +  ALV+MY KCGSL +A   F ++  + VV+WT  +
Sbjct: 445 GALLQGRAAHARLAPAGFEKEVEVGVALVNMYGKCGSLEDALGTFAKLERKTVVTWTVAM 504

Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
            A    G+  + + LF++M + G+ PDS+A ++ L ACSH+G L+EGR YF  M + Y +
Sbjct: 505 LALAHHGEFRETLRLFTEMELDGVAPDSVALLAALFACSHSGKLKEGRSYFTNMIQDYGV 564

Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNM-DIGILAA 491
            P + H+ C+VDLL R G +  A +LI  MP EP+   W +L+AAC  +S + D   +AA
Sbjct: 565 SPTLAHYDCVVDLLCRTGLLGRAEELIDSMPFEPSAVTWTTLLAACRTHSTLYDKAKVAA 624

Query: 492 DHIFHLAPNQSGYYVLLSNIYA 513
           D      P+ +G Y  LS +Y+
Sbjct: 625 DKALETEPHNAGIYFALSYMYS 646



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 206/433 (47%), Gaps = 52/433 (12%)

Query: 66  IGLKLMRTYGACGQMVDTRHVFDE--ITNKNVVFFNVLIRSYVNNYLYYDALHVYKN-MS 122
           +   L+  Y  CG + D R VFD+  + +K +  +  ++  Y  +     AL +Y+  +S
Sbjct: 62  VATALVDMYSKCGSLDDARRVFDDYSVDSKRMALWTAMVSGYALHGHSRQALELYQRFLS 121

Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK 182
           V    PD       + ACS +  L  G  IH  +    LD++   GNGLV MYG+C  L 
Sbjct: 122 VSSEPPDTVMLLSAITACSSAEFLDDGRAIHAQISSRELDHHTHLGNGLVNMYGRCKELH 181

Query: 183 EARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242
            AR+    + +K++V+WN ++  YAQ G    A+++ + M+   +  DA T   +L +  
Sbjct: 182 RARKAFEKITAKNLVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVAADAVTFLHVLDACG 241

Query: 243 NTSPEN---------------------------------VLSVKEMFLKLDNKNLVSWNV 269
                                                  +   K +F  +  KN V+   
Sbjct: 242 GVEAAGDVRRIHKKLELSGLEWDVFVASSLVNAYGKCGCLAEAKRVFDTMPLKNTVTMTS 301

Query: 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
           M+A YA + +  EA+++Y +ME  G + + ++  S L AC  + AL  GR IH  +    
Sbjct: 302 MLAAYAQHGLGEEALEIYREMESQGRKADRVTFISALDACSSIGALSQGRAIHSRLLVSG 361

Query: 330 L--QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
           +  QP++ L  AL++MY +CG L  A+++FD M  ++ ++W +++ +Y   G G +A+ L
Sbjct: 362 IIQQPDVVLGTALLNMYGRCGVLDAAKSLFDGMADKNTITWNALMGSYAQWGYGKEALNL 421

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP-----RIEHFACL 442
           +  M      P+S+ F+++L+ACS  G L +GR          +L P      +E    L
Sbjct: 422 YHSMDAQ---PNSLTFLAMLTACSTVGALLQGR------AAHARLAPAGFEKEVEVGVAL 472

Query: 443 VDLLGRAGKVEEA 455
           V++ G+ G +E+A
Sbjct: 473 VNMYGKCGSLEDA 485



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 105/208 (50%), Gaps = 2/208 (0%)

Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ-MEVHGIEPNAISVASVLPACGDLSALLL 317
           +D+K +  W  M++ YA +    +A++LY + + V    P+ + + S + AC     L  
Sbjct: 88  VDSKRMALWTAMVSGYALHGHSRQALELYQRFLSVSSEPPDTVMLLSAITACSSAEFLDD 147

Query: 318 GRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGM 377
           GR IH  +  ++L  +  L N LV+MY +C  L  AR  F+++  +++VSW  +I AY  
Sbjct: 148 GRAIHAQISSRELDHHTHLGNGLVNMYGRCKELHRARKAFEKITAKNLVSWNVIIGAYAQ 207

Query: 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437
            G    A+ LF +M   G+  D++ F+ VL AC       + R   K + E   L   + 
Sbjct: 208 EGHRGHAMELFQRMDPEGVAADAVTFLHVLDACGGVEAAGDVRRIHKKL-ELSGLEWDVF 266

Query: 438 HFACLVDLLGRAGKVEEAYDLIKQMPME 465
             + LV+  G+ G + EA  +   MP++
Sbjct: 267 VASSLVNAYGKCGCLAEAKRVFDTMPLK 294


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 145/397 (36%), Positives = 233/397 (58%), Gaps = 34/397 (8%)

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           R++   MP KD+V+WN+++AG A+NG + E L + REM    +KPD+ T++S+LP +   
Sbjct: 254 RKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAEN 313

Query: 245 SP---------------------------------ENVLSVKEMFLKLDNKNLVSWNVMI 271
                                                V+    +F  L  ++ +SWN +I
Sbjct: 314 VDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSII 373

Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
           A    N +  E +  + QM +  I+P + S +S++PAC  L+ L LG+++H Y+ R    
Sbjct: 374 AGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 433

Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
            N+ + ++LVDMYAKCG++  AR +FD+MR +D+VSWT+MI    + G   DA+ LF +M
Sbjct: 434 ENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQM 493

Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
              G+ P+ +AF++VL+ACSHAGL++E   YF  MT  + + P +EH+A + DLLGRAG+
Sbjct: 494 KTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGR 553

Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
           +EEAYD I  MP+ P   +W +L++AC ++ N+D+    A+ I  + P  +G Y+LL+NI
Sbjct: 554 LEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANI 613

Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           Y+ A RW +  + R  +   GI+K P  S +E+ ++V
Sbjct: 614 YSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKV 650



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 133/512 (25%), Positives = 243/512 (47%), Gaps = 41/512 (8%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LHAQ++  Q         L  +  Y     + D+  +F+ +     + +  +IR Y +
Sbjct: 28  QQLHAQVLKFQASSLCNLSLLLSI--YSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTS 85

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           + L + +L  +  M   G  PD   +P VLKAC+    L +G  +H  +++VGLD++L+ 
Sbjct: 86  HGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYT 145

Query: 168 GNGLVAMYGKCGCLKEARR-------VLNDMP--SKDVVTWNSMVAGYAQNGRFDEALDV 218
           GN L+ MY K   LK++ R       VL++M   ++ V T + +V    +     EA + 
Sbjct: 146 GNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVLVGNQGRKVSDIEAFNY 205

Query: 219 ---CREME------SLRIKPDAD----TMASLLPSVTNTSPE-NVLSVKEMFLKLDNKNL 264
              CR  E       +  KP ++       +L   + + S   +V SV+++F  +  K+L
Sbjct: 206 DVSCRSREFEAQVLEIDYKPRSEYREMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDL 265

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324
           VSWN +IA  A N +  E + +  +M    ++P++ +++SVLP   +   +  G++IH  
Sbjct: 266 VSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGC 325

Query: 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDA 384
             R+ L   + + ++L+DMYAKC  + ++  VF  +  +D +SW S+I+    +G   + 
Sbjct: 326 SIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEG 385

Query: 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444
           +  F +MLM+ + P S +F S++ AC+H   L  G+     +T        I   + LVD
Sbjct: 386 LKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN-GFDENIFIASSLVD 444

Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH------LA 498
           +  + G +  A  +  +M +  +   W +++  C L+ +     L A  +F       + 
Sbjct: 445 MYAKCGNIRTARQIFDRMRLR-DMVSWTAMIMGCALHGHA----LDAIELFEQMKTEGIE 499

Query: 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530
           PN    YV    +       G V    K+ NS
Sbjct: 500 PN----YVAFMAVLTACSHAGLVDEAWKYFNS 527



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 112/201 (55%), Gaps = 1/201 (0%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           DI   K++H    I Q L +   +   L+  Y  C ++VD+  VF  +T ++ + +N +I
Sbjct: 315 DISKGKEIHG-CSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSII 373

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
              V N L+ + L  ++ M +    P  Y++  ++ AC+   +L +G Q+H  + + G D
Sbjct: 374 AGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 433

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            N+F  + LV MY KCG ++ AR++ + M  +D+V+W +M+ G A +G   +A+++  +M
Sbjct: 434 ENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQM 493

Query: 223 ESLRIKPDADTMASLLPSVTN 243
           ++  I+P+     ++L + ++
Sbjct: 494 KTEGIEPNYVAFMAVLTACSH 514


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 157/390 (40%), Positives = 235/390 (60%), Gaps = 36/390 (9%)

Query: 195 DVVTWNSMVAGYAQNGRFDEALDVCREME-SLRIKPDADTMASLLPSVTNTSP------- 246
           +V  WN+++ GYA+ G    A+ + REM  S  ++PD  T   LL +V   +        
Sbjct: 84  NVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETI 143

Query: 247 --------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
                                      +V S  ++F K+  K+LV+WN +I  +A N  P
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203

Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
            EA+ LY +M++ GI+P+  ++ S+L AC  + AL LG++ H Y+ +  L  NL   N L
Sbjct: 204 EEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVL 263

Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM-LMSGLCPD 399
           +D+YA+CG + EA+T+FD+M  ++ VSWTS+I    ++G G +A+ LF  M    GL P 
Sbjct: 264 LDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPC 323

Query: 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLI 459
            I FV +L ACSH G+++EG  YF+ M+E+YK+ PRIEHF C+VDLL RAG+V++AY+ I
Sbjct: 324 EITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYI 383

Query: 460 KQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519
            +MPM+PN  IW +L+ AC ++ + D+  LA   I  L PN SG YVLLSN+YA   RW 
Sbjct: 384 LKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWS 443

Query: 520 DVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           DV+++RK M   G++K+PG S VE+ ++V 
Sbjct: 444 DVQKIRKQMLRDGVRKVPGHSLVEVGNRVH 473



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 193/411 (46%), Gaps = 45/411 (10%)

Query: 32  DACNDILDKY--PDIKTLKKLHAQIIINQHLHSNPSIGLKL---MRTYGACGQMVDTRHV 86
           + C ++L  Y    +  L+++HA  I N    S+  +G  L   + +  +   M     V
Sbjct: 16  EKCINLLQTYGVSSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKV 75

Query: 87  FDEITNK-NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF-DPDCYTYPCVLKACSGSN 144
           F +I    NV  +N LIR Y        A+ +Y+ M   GF +PD +TYP +LKA     
Sbjct: 76  FSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMA 135

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
            + +G  IH  V++ G    ++  N L+ +Y  CG +  A +V + MP KD+V WNS++ 
Sbjct: 136 DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVIN 195

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS----------------------VT 242
           G+A+NG+ +EAL +  EM+   IKPD  T+ SLL +                        
Sbjct: 196 GFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTR 255

Query: 243 NTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
           N    NVL             K +F ++ +KN VSW  +I   A N +  EA++L+  ME
Sbjct: 256 NLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNME 315

Query: 292 V-HGIEPNAISVASVLPACGDLSALLLGRK-IHRYVERKKLQPNLRLENALVDMYAKCGS 349
              G+ P  I+   +L AC     +  G +   R  E  K++P +     +VD+ A+ G 
Sbjct: 316 SKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQ 375

Query: 350 LTEARTVFDQMRCQ-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399
           + +A     +M  Q +VV W +++ A  + G     +A  ++M +  L P+
Sbjct: 376 VKKAYEYILKMPMQPNVVIWRTLLGACTVHGD--SDLAELARMKILQLEPN 424



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 129/239 (53%), Gaps = 4/239 (1%)

Query: 241 VTNTSPENVLSVKEMFLKLDNK-NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPN 298
           V+  SP  +    ++F K++   N+  WN +I  YA       AV LY +M   G +EP+
Sbjct: 61  VSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPD 120

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
             +   +L A G ++ + LG  IH  V R      + ++N+L+ +YA CG +  A  VFD
Sbjct: 121 THTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFD 180

Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
           +M  +D+V+W S+I+ +  +G+  +A+AL+++M + G+ PD    VS+LSAC+  G L  
Sbjct: 181 KMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTL 240

Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
           G+  F +   +  L   +     L+DL  R G+VEEA  L  +M ++ N   W SL+  
Sbjct: 241 GK-RFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVG 297



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 164/331 (49%), Gaps = 21/331 (6%)

Query: 40  KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
           K  D++  + +H+ ++I     S   +   L+  Y  CG +     VFD++  K++V +N
Sbjct: 133 KMADVRLGETIHS-VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191

Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
            +I  +  N    +AL +Y  M + G  PD +T   +L AC+   +L +G + H  ++KV
Sbjct: 192 SVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKV 251

Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
           GL  NL + N L+ +Y +CG ++EA+ + ++M  K+ V+W S++ G A NG   EA+++ 
Sbjct: 252 GLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELF 311

Query: 220 REMESLR-IKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLVSWNVMIAV 273
           + MES   + P   T   +L + ++     V    E F ++  +      +  +  M+ +
Sbjct: 312 KNMESKEGLLPCEITFVGILYACSHCG--MVKEGFEYFRRMSEEYKIEPRIEHFGCMVDL 369

Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC---GDLSALLLGRKIHRYVERKKL 330
            A      +A +  L+M    ++PN +   ++L AC   GD     L R     ++  +L
Sbjct: 370 LARAGQVKKAYEYILKMP---MQPNVVIWRTLLGACTVHGDSDLAELAR-----MKILQL 421

Query: 331 QPNLRLENALV-DMYAKCGSLTEARTVFDQM 360
           +PN   +  L+ +MYA     ++ + +  QM
Sbjct: 422 EPNHSGDYVLLSNMYASEQRWSDVQKIRKQM 452


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 168/545 (30%), Positives = 286/545 (52%), Gaps = 52/545 (9%)

Query: 54  IIINQHLHSNPSIGLKLMRTYG--ACGQMVDT----------RHVFDEITNKNVVFFNVL 101
           +I+  H H      +KL   Y    C  +VD             +F  + NK+ V FN L
Sbjct: 158 VIVQIHTHV-----IKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSL 212

Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
           +  Y N  L  +A+ ++  +   G  P  +T+  +L A  G +    G Q+H  V+K   
Sbjct: 213 MTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNF 272

Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
            +N+F GN L+  Y K   + E  ++  +MP  D +++N ++  YA NG+F E+ D+ R+
Sbjct: 273 VWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRK 332

Query: 222 MESLRIKPDADTMASLLPSVTNT----------------------SPENVL--------- 250
           ++  R        A+LL   T++                        EN L         
Sbjct: 333 LQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNG 392

Query: 251 --SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
               +++F  +  K+ V W  MI+ Y       E ++++  M   G+  +  + AS+L A
Sbjct: 393 DKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRA 452

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
           C +L+++ LGR++H  + R     N+   +AL+D YAKCG +T+A   F +M  ++ VSW
Sbjct: 453 CANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSW 512

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
            ++ISAY  +G     +  F +M+ SG  PDS++F+SVLSACSH G +EE  ++F  MT+
Sbjct: 513 NALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQ 572

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
            Y++ P+ EH+  +VD+L R G+ +EA  L+ +MP EP+E +W S++ +C ++ N ++  
Sbjct: 573 IYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAK 632

Query: 489 LAADHIFHLAP-NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
            AAD +F++     +  Y+ +SNIYA AG+W +V +V+K M  +G++K+P  S VE+  Q
Sbjct: 633 KAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQ 692

Query: 547 VQIIA 551
             + +
Sbjct: 693 THVFS 697



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/470 (28%), Positives = 226/470 (48%), Gaps = 37/470 (7%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRT-YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +HA  + +Q + +  +I L +M + +   G++   R +FD +  +  V + +LI  Y+ +
Sbjct: 60  VHAHQVFDQ-MPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQS 118

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
               +A  +Y +M   G +PD  T   +L       +  V +QIH  V+K+G +YNL   
Sbjct: 119 NQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVC 178

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           N LV  Y K  CL  A ++   M +KD VT+NS++ GY+  G  +EA+++  E+ +  IK
Sbjct: 179 NSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIK 238

Query: 229 PDADTMASLLPSV------------------TN---------------TSPENVLSVKEM 255
           P   T A+LL +                   TN               +  + V  V ++
Sbjct: 239 PSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKL 298

Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
           F ++   + +S+NV+I  YA N    E+ DL+ +++    +      A++L        L
Sbjct: 299 FYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNL 358

Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
            +GR+IH            R+ENALVDMYAKC    EA+ +FD + C+  V WT+MISAY
Sbjct: 359 RMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAY 418

Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
              G+  + + +FS M  +G+  D   F S+L AC++   +  GR    ++      +  
Sbjct: 419 VQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRS-GFMSN 477

Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
           +   + L+D   + G + +A     +MP E N   W +L++A     N+D
Sbjct: 478 VYSGSALLDTYAKCGCMTDAIKSFGEMP-ERNSVSWNALISAYAQNGNVD 526



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 170/402 (42%), Gaps = 68/402 (16%)

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDV--------------- 196
           I   +VK G + N    N  V  + + G L  A +V + MP+K+                
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 197 ----------------VTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
                           V+W  ++ GY Q+ +  EA  +  +M    I+PD  T+ +LL  
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSG 149

Query: 241 VTNTSPENVLS---------------------------------VKEMFLKLDNKNLVSW 267
                 +NV+                                    ++F  + NK+ V++
Sbjct: 150 FGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTF 209

Query: 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER 327
           N ++  Y+N  +  EA++L+L++   GI+P+  + A++L A   L     G+++H +V +
Sbjct: 210 NSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLK 269

Query: 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVAL 387
                N+ + NAL+D Y+K   + E   +F +M   D +S+  +I++Y  +GQ  ++  L
Sbjct: 270 TNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDL 329

Query: 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY-YFKIMTEQYKLVPRIEHFACLVDLL 446
           F K+  +        F ++LS  + +  L  GR  + + +T       R+E+   LVD+ 
Sbjct: 330 FRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVEN--ALVDMY 387

Query: 447 GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
            +    +EA  +   +  +     W ++++A       + GI
Sbjct: 388 AKCNGDKEAQKIFDNIACKSTVP-WTAMISAYVQKGKHEEGI 428


>gi|115484979|ref|NP_001067633.1| Os11g0256100 [Oryza sativa Japonica Group]
 gi|62734753|gb|AAX96862.1| Similar to selenium-binding protein [Oryza sativa Japonica Group]
 gi|77549625|gb|ABA92422.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|113644855|dbj|BAF27996.1| Os11g0256100 [Oryza sativa Japonica Group]
 gi|125597201|gb|EAZ36981.1| hypothetical protein OsJ_21321 [Oryza sativa Japonica Group]
          Length = 582

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 174/541 (32%), Positives = 289/541 (53%), Gaps = 47/541 (8%)

Query: 50  LHAQIIINQHLHSNPSIGLKLMRTYG-ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           +HA+ ++   + +NP+    L+     AC  +   R VFD   +++   +N L+R++ ++
Sbjct: 44  IHARAVV-LGISANPAFATSLITAVAPAC--LAYARRVFDAAPSRDAYMWNTLLRAHAHS 100

Query: 109 YLY-YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
             +  DAL +Y  M   G  PD YTYP VL AC+ + +  +G   H   V+  L  + F 
Sbjct: 101 RAHARDALALYARMRAAGVAPDHYTYPIVLPACAAARAPRLGRAAHGDAVRFALARDGFV 160

Query: 168 GNGLVAMYGKCGCLKEARRVLNDM-PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
            + L++MY + G +++A RV  +   ++ VV+W +MVAGYAQN  F EA+ +  +M +  
Sbjct: 161 SSALISMYSQEGEVRDAERVFAERDDARTVVSWTAMVAGYAQNCFFGEAVTLFSDMVAAG 220

Query: 227 IKPDADTMASLLPSVTNTSPENVLSVKEM------------------------------- 255
           + P+  T+ S LP +     +  L V EM                               
Sbjct: 221 VLPNEITLISFLPCLRG---QEWLPVGEMVHGFVVKLGFDANVPMVNALITMYGRCGSAP 277

Query: 256 -----FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
                F  + ++ LVSWN M+A+Y  +    +A+  + +M    +  + +++ SVL AC 
Sbjct: 278 VARVLFNGMSSRTLVSWNTMVAMYEQHGDGVQAIKFFRRMLTEKVGFDCVTLVSVLSACA 337

Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ--MRCQDVVSW 368
              AL  G+ +H       L  + R+ N LVDMYAKCG +  A+ VF    +R   VVSW
Sbjct: 338 RSGALGTGKWVHELARSHGLDTDARIGNVLVDMYAKCGEIAYAKEVFHSHGLRGHSVVSW 397

Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
           ++MI+AY   G+  +A+ LFS M   G+ P+S  F +VL AC H+GL++EG  +F  +  
Sbjct: 398 SAMINAYANHGEAEEALKLFSLMRNEGVRPNSFTFTAVLMACCHSGLVDEGLKHFNSIAT 457

Query: 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488
            Y++ P +EH+AC+VD+LGRAG++ EAY +I+ MP+ P++ +WG+ +  C L+  +++  
Sbjct: 458 DYQMSPTLEHYACMVDMLGRAGRLVEAYGIIRGMPIRPDKCVWGAFLGGCRLHGMVELAE 517

Query: 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQ 548
             A  +F    N   +YVL++N+Y +AG   D +R+R  M    +KK  G S+   D+ +
Sbjct: 518 YVAKELFDSGSNDVTFYVLMANMYFEAGMLEDAERIRGVMKEMELKKTAGHSLVCTDRER 577

Query: 549 I 549
           I
Sbjct: 578 I 578


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,793,301,404
Number of Sequences: 23463169
Number of extensions: 358875110
Number of successful extensions: 966779
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8380
Number of HSP's successfully gapped in prelim test: 3218
Number of HSP's that attempted gapping in prelim test: 780313
Number of HSP's gapped (non-prelim): 64313
length of query: 571
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 423
effective length of database: 8,886,646,355
effective search space: 3759051408165
effective search space used: 3759051408165
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)