BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008276
(571 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/521 (62%), Positives = 406/521 (77%), Gaps = 2/521 (0%)
Query: 37 ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
+LD YPDI+TL+ +H++II+ + L N S+G+KLMR Y + + R VFDEI +NV+
Sbjct: 48 VLDTYPDIRTLRTVHSRIIL-EDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVI 106
Query: 97 FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
NV+IRSYVNN Y + + V+ M PD YT+PCVLKACS S ++++G +IH S
Sbjct: 107 IINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA 166
Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
KVGL LF GNGLV+MYGKCG L EAR VL++M +DVV+WNS+V GYAQN RFD+AL
Sbjct: 167 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDAL 226
Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
+VCREMES++I DA TMASLLP+V+NT+ ENV+ VK+MF K+ K+LVSWNVMI VY
Sbjct: 227 EVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 286
Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
N+MP EAV+LY +ME G EP+A+S+ SVLPACGD SAL LG+KIH Y+ERKKL PNL L
Sbjct: 287 NAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLL 346
Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
ENAL+DMYAKCG L +AR VF+ M+ +DVVSWT+MISAYG SG+G DAVALFSK+ SGL
Sbjct: 347 ENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGL 406
Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
PDSIAFV+ L+ACSHAGLLEEGR FK+MT+ YK+ PR+EH AC+VDLLGRAGKV+EAY
Sbjct: 407 VPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAY 466
Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
I+ M MEPNER+WG+L+ AC ++S+ DIG+LAAD +F LAP QSGYYVLLSNIYAKAG
Sbjct: 467 RFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAG 526
Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
RW +V +R M SKG+KK PGAS VE+N + + RS
Sbjct: 527 RWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRS 567
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/506 (37%), Positives = 304/506 (60%), Gaps = 46/506 (9%)
Query: 48 KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH---VFDEITNKNVVFFNVLIRS 104
KK++A III H S S + M + C ++ D + +F++++N NV +N +IR+
Sbjct: 27 KKINASIII--HGLSQSSFMVTKMVDF--CDKIEDMDYATRLFNQVSNPNVFLYNSIIRA 82
Query: 105 YVNNYLYYDALHVYKNMSVHGFD-PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
Y +N LY D + +YK + F+ PD +T+P + K+C+ S +G Q+H + K G +
Sbjct: 83 YTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRF 142
Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
++ N L+ MY K L +A +V ++M +DV++WNS+++GYA+ G+ +A
Sbjct: 143 HVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKA-------- 194
Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
K +F + +K +VSW MI+ Y EA
Sbjct: 195 -----------------------------KGLFHLMLDKTIVSWTAMISGYTGIGCYVEA 225
Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
+D + +M++ GIEP+ IS+ SVLP+C L +L LG+ IH Y ER+ + NAL++M
Sbjct: 226 MDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEM 285
Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
Y+KCG +++A +F QM +DV+SW++MIS Y G + A+ F++M + + P+ I F
Sbjct: 286 YSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITF 345
Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
+ +LSACSH G+ +EG YF +M + Y++ P+IEH+ CL+D+L RAGK+E A ++ K MP
Sbjct: 346 LGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMP 405
Query: 464 MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKR 523
M+P+ +IWGSL+++C N+D+ ++A DH+ L P G YVLL+NIYA G+W DV R
Sbjct: 406 MKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSR 465
Query: 524 VRKFMNSKGIKKMPGAS-VEMNDQVQ 548
+RK + ++ +KK PG S +E+N+ VQ
Sbjct: 466 LRKMIRNENMKKTPGGSLIEVNNIVQ 491
Score = 102 bits (255), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 110/219 (50%), Gaps = 5/219 (2%)
Query: 25 QYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR 84
++ +++ +A D+ K+ D+ K+ ++ + N L+ Y GQM +
Sbjct: 141 RFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWN-----SLLSGYARLGQMKKAK 195
Query: 85 HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
+F + +K +V + +I Y Y +A+ ++ M + G +PD + VL +C+
Sbjct: 196 GLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLG 255
Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
SL +G IH + G N L+ MY KCG + +A ++ M KDV++W++M++
Sbjct: 256 SLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMIS 315
Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243
GYA +G A++ EM+ ++KP+ T LL + ++
Sbjct: 316 GYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSH 354
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/548 (34%), Positives = 320/548 (58%), Gaps = 38/548 (6%)
Query: 37 ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
++D LK++HA++++ L + + KL+ + G + R VFD++ +
Sbjct: 27 LIDSATHKAQLKQIHARLLV-LGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIF 85
Query: 97 FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
+N +IR Y N + DAL +Y NM + PD +T+P +LKACSG + L +G +H V
Sbjct: 86 PWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQV 145
Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP--SKDVVTWNSMVAGYAQNGRFDE 214
++G D ++F NGL+A+Y KC L AR V +P + +V+W ++V+ YAQNG E
Sbjct: 146 FRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPME 205
Query: 215 ALDVCREMESLRIKPDADTMASLLPSVT--------------------NTSPENVLSVKE 254
AL++ +M + +KPD + S+L + T P+ ++S+
Sbjct: 206 ALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNT 265
Query: 255 M-------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAIS 301
M F K+ + NL+ WN MI+ YA N EA+D++ +M + P+ IS
Sbjct: 266 MYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTIS 325
Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
+ S + AC + +L R ++ YV R + ++ + +AL+DM+AKCGS+ AR VFD+
Sbjct: 326 ITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL 385
Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
+DVV W++MI YG+ G+ +A++L+ M G+ P+ + F+ +L AC+H+G++ EG +
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445
Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
+F M + +K+ P+ +H+AC++DLLGRAG +++AY++IK MP++P +WG+L++AC +
Sbjct: 446 FFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504
Query: 482 SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS- 540
++++G AA +F + P+ +G+YV LSN+YA A W V VR M KG+ K G S
Sbjct: 505 RHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564
Query: 541 VEMNDQVQ 548
VE+ +++
Sbjct: 565 VEVRGRLE 572
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 356 bits (914), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 200/547 (36%), Positives = 309/547 (56%), Gaps = 43/547 (7%)
Query: 38 LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
L K ++ +K+LHAQII ++LH + I KL+ C Q VF+++ NV
Sbjct: 26 LPKCANLNQVKQLHAQII-RRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHL 84
Query: 98 FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
N LIR++ N Y A V+ M G D +TYP +LKACSG + L V +H +
Sbjct: 85 CNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIE 144
Query: 158 KVGLDYNLFNGNGLVAMYGKCGCL---------------------------------KEA 184
K+GL +++ N L+ Y +CG L ++A
Sbjct: 145 KLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDA 204
Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
RR+ ++MP +D+++WN+M+ GYA+ +A ++ +M P+ +T++ + +
Sbjct: 205 RRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKM------PERNTVSWSTMVMGYS 258
Query: 245 SPENVLSVKEMFLK--LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
++ + MF K L KN+V+W ++IA YA + EA L QM G++ +A +V
Sbjct: 259 KAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAV 318
Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
S+L AC + L LG +IH ++R L N + NAL+DMYAKCG+L +A VF+ +
Sbjct: 319 ISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPK 378
Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
+D+VSW +M+ G+ G G +A+ LFS+M G+ PD + F++VL +C+HAGL++EG Y
Sbjct: 379 KDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDY 438
Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
F M + Y LVP++EH+ CLVDLLGR G+++EA +++ MPMEPN IWG+L+ AC +++
Sbjct: 439 FYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHN 498
Query: 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA-SV 541
+DI D++ L P G Y LLSNIYA A W V +R M S G++K GA SV
Sbjct: 499 EVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSV 558
Query: 542 EMNDQVQ 548
E+ D +
Sbjct: 559 ELEDGIH 565
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 355 bits (912), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 199/538 (36%), Positives = 303/538 (56%), Gaps = 36/538 (6%)
Query: 48 KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
++LH I+ S+G L+ Y ++ R VFDE+T ++V+ +N +I YV+
Sbjct: 215 EQLHG-FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS 273
Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
N L L V+ M V G + D T V C+ S + +G +H VK
Sbjct: 274 NGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRF 333
Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
N L+ MY KCG L A+ V +M + VV++ SM+AGYA+ G EA+ + EME I
Sbjct: 334 CNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI 393
Query: 228 KPDADTMASLL------------PSVTNTSPENVL------------------SVKE--- 254
PD T+ ++L V EN L S++E
Sbjct: 394 SPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAEL 453
Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY-LQMEVHGIEPNAISVASVLPACGDLS 313
+F ++ K+++SWN +I Y+ N EA+ L+ L +E P+ +VA VLPAC LS
Sbjct: 454 VFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLS 513
Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
A GR+IH Y+ R + + N+LVDMYAKCG+L A +FD + +D+VSWT MI+
Sbjct: 514 AFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIA 573
Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
YGM G G +A+ALF++M +G+ D I+FVS+L ACSH+GL++EG +F IM + K+
Sbjct: 574 GYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIE 633
Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
P +EH+AC+VD+L R G + +AY I+ MP+ P+ IWG+L+ C ++ ++ + A+
Sbjct: 634 PTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEK 693
Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
+F L P +GYYVL++NIYA+A +W VKR+RK + +G++K PG S +E+ +V I
Sbjct: 694 VFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIF 751
Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 149/534 (27%), Positives = 250/534 (46%), Gaps = 49/534 (9%)
Query: 7 LCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLK--KLHAQIIINQHLHSNP 64
C + V+ L +S ++ + C+ +L D K+LK K I +
Sbjct: 71 FCESGNLENAVKLLCVSGKWDIDPRTLCS-VLQLCADSKSLKDGKEVDNFIRGNGFVIDS 129
Query: 65 SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
++G KL Y CG + + VFDE+ + +F+N+L+ + + ++ ++K M
Sbjct: 130 NLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSS 189
Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
G + D YT+ CV K+ S S+ G Q+H ++K G GN LVA Y K + A
Sbjct: 190 GVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSA 249
Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
R+V ++M +DV++WNS++ GY NG ++ L V +M I+ D T+ S+ ++
Sbjct: 250 RKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADS 309
Query: 245 ------------------SPENVL---------------SVKEMFLKLDNKNLVSWNVMI 271
S E+ S K +F ++ ++++VS+ MI
Sbjct: 310 RLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMI 369
Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
A YA + EAV L+ +ME GI P+ +V +VL C L G+++H +++ L
Sbjct: 370 AGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLG 429
Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
++ + NAL+DMYAKCGS+ EA VF +MR +D++SW ++I Y + +A++LF+ +
Sbjct: 430 FDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLL 489
Query: 392 LMSG-LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA-CLVDLLGRA 449
L PD VL AC+ ++GR + R H A LVD+ +
Sbjct: 490 LEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR--HVANSLVDMYAKC 547
Query: 450 GKVEEAY---------DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
G + A+ DL+ M + G A L++ M + AD I
Sbjct: 548 GALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEI 601
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 191/572 (33%), Positives = 312/572 (54%), Gaps = 74/572 (12%)
Query: 48 KKLHAQIIINQHL-HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
K+LHAQ I Q L H++ SI ++ Y + + +F + + V+ + +IR +
Sbjct: 25 KQLHAQFIRTQSLSHTSASI---VISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFT 81
Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
+ L+ AL + M G PD +P VLK+C+ L G +H +V++G+D +L+
Sbjct: 82 DQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLY 141
Query: 167 NGNGLVAMYGKC-------------------------------GCL-----KEARRVLND 190
GN L+ MY K C+ RRV
Sbjct: 142 TGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEV 201
Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN------- 243
MP KDVV++N+++AGYAQ+G +++AL + REM + +KPD+ T++S+LP +
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKG 261
Query: 244 --------------------------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
+ + +F +L ++ +SWN ++A Y N
Sbjct: 262 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQN 321
Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
EA+ L+ QM ++P A++ +SV+PAC L+ L LG+++H YV R N+ +
Sbjct: 322 GRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIA 381
Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
+ALVDMY+KCG++ AR +FD+M D VSWT++I + + G G++AV+LF +M G+
Sbjct: 382 SALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVK 441
Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
P+ +AFV+VL+ACSH GL++E YF MT+ Y L +EH+A + DLLGRAGK+EEAY+
Sbjct: 442 PNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYN 501
Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
I +M +EP +W +L+++C ++ N+++ A+ IF + G YVL+ N+YA GR
Sbjct: 502 FISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGR 561
Query: 518 WGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
W ++ ++R M KG++K P S +EM ++
Sbjct: 562 WKEMAKLRLRMRKKGLRKKPACSWIEMKNKTH 593
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 111/207 (53%), Gaps = 1/207 (0%)
Query: 37 ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
I +Y D+ K++H +I + + S+ IG L+ Y ++ D+ VF + ++ +
Sbjct: 251 IFSEYVDVIKGKEIHG-YVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGI 309
Query: 97 FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
+N L+ YV N Y +AL +++ M P + V+ AC+ +L +G Q+H V
Sbjct: 310 SWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYV 369
Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
++ G N+F + LV MY KCG +K AR++ + M D V+W +++ G+A +G EA+
Sbjct: 370 LRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAV 429
Query: 217 DVCREMESLRIKPDADTMASLLPSVTN 243
+ EM+ +KP+ ++L + ++
Sbjct: 430 SLFEEMKRQGVKPNQVAFVAVLTACSH 456
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 344 bits (883), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 208/589 (35%), Positives = 308/589 (52%), Gaps = 86/589 (14%)
Query: 33 ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
AC +I ++ + HA ++ + SN +G L+ Y C + D R VFDE++
Sbjct: 136 ACGEI----SSVRCGESAHALSLVTGFI-SNVFVGNALVAMYSRCRSLSDARKVFDEMSV 190
Query: 93 KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQ 151
+VV +N +I SY AL ++ M+ G PD T VL C+ + +G Q
Sbjct: 191 WDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQ 250
Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
+HC V + N+F GN LV MY KCG + EA V ++M KDVV+WN+MVAGY+Q GR
Sbjct: 251 LHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGR 310
Query: 212 FD-----------------------------------EALDVCREMESLRIKPDADTMAS 236
F+ EAL VCR+M S IKP+ T+ S
Sbjct: 311 FEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLIS 370
Query: 237 LLPSVTNTSP-------------------------ENVL---------------SVKEMF 256
+L + EN++ + + MF
Sbjct: 371 VLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMF 430
Query: 257 --LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM--EVHGIEPNAISVASVLPACGDL 312
L +++V+W VMI Y+ + +A++L +M E PNA +++ L AC L
Sbjct: 431 DSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASL 490
Query: 313 SALLLGRKIHRYVERKKLQP-NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
+AL +G++IH Y R + L + N L+DMYAKCGS+++AR VFD M ++ V+WTS+
Sbjct: 491 AALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSL 550
Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
++ YGM G G +A+ +F +M G D + + VL ACSH+G++++G YF M +
Sbjct: 551 MTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFG 610
Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
+ P EH+ACLVDLLGRAG++ A LI++MPMEP +W + ++ C ++ +++G AA
Sbjct: 611 VSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAA 670
Query: 492 DHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
+ I LA N G Y LLSN+YA AGRW DV R+R M KG+KK PG S
Sbjct: 671 EKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCS 719
Score = 176 bits (446), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 147/526 (27%), Positives = 231/526 (43%), Gaps = 95/526 (18%)
Query: 42 PDIKTLKKLHAQIIINQHLHSNPSIGLKL----MRTYGACGQMVDTRHVFDEI--TNKNV 95
P I K + +I+Q L S + L L + TY + G + + ++ V
Sbjct: 33 PFIHKCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGV 92
Query: 96 VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
+N LIRSY +N L+++ M + PD YT+P V KAC +S+ G H
Sbjct: 93 YHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHAL 152
Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
+ G N+F GN LVAMY +C L +AR+V ++M DVV+WNS++ YA+ G+ A
Sbjct: 153 SLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVA 212
Query: 216 LDVCREMES-LRIKPDADTMASLLP-----------------SVTNTSPENVL------- 250
L++ M + +PD T+ ++LP +VT+ +N+
Sbjct: 213 LEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVD 272
Query: 251 ---------SVKEMFLKLDNKNLVSWNVMIA----------------------------- 272
+F + K++VSWN M+A
Sbjct: 273 MYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVT 332
Query: 273 ------VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
YA + EA+ + QM GI+PN +++ SVL C + AL+ G++IH Y
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAI 392
Query: 327 RKKLQPNLR---------LENALVDMYAKCGSLTEARTVFDQM--RCQDVVSWTSMISAY 375
+ + +LR + N L+DMYAKC + AR +FD + + +DVV+WT MI Y
Sbjct: 393 KYPI--DLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGY 450
Query: 376 GMSGQGYDAVALFSKMLMSGLC---PDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYK 431
G A+ L S+M C P++ L AC+ L G+ + + Q
Sbjct: 451 SQHGDANKALELLSEMFEED-CQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQN 509
Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
VP CL+D+ + G + +A + M M NE W SL+
Sbjct: 510 AVPLFVS-NCLIDMYAKCGSISDARLVFDNM-MAKNEVTWTSLMTG 553
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 342 bits (876), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 186/486 (38%), Positives = 275/486 (56%), Gaps = 44/486 (9%)
Query: 62 SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
S+ IG L+ Y CG + D + VFDE+ ++NVV +N LI + N +AL V++ M
Sbjct: 185 SDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMM 244
Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGC 180
+PD T V+ AC+ +++ VG ++H VVK L ++ N V MY KC
Sbjct: 245 LESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSR 304
Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
+KEAR + + MP ++V+ SM++GYA A T A+ L
Sbjct: 305 IKEARFIFDSMPIRNVIAETSMISGYAMA---------------------ASTKAARL-- 341
Query: 241 VTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
MF K+ +N+VSWN +IA Y N EA+ L+ ++ + P
Sbjct: 342 --------------MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHY 387
Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKL------QPNLRLENALVDMYAKCGSLTEAR 354
S A++L AC DL+ L LG + H +V + + ++ + N+L+DMY KCG + E
Sbjct: 388 SFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGY 447
Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
VF +M +D VSW +MI + +G G +A+ LF +ML SG PD I + VLSAC HAG
Sbjct: 448 LVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAG 507
Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
+EEGR+YF MT + + P +H+ C+VDLLGRAG +EEA +I++MPM+P+ IWGSL
Sbjct: 508 FVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSL 567
Query: 475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534
+AAC ++ N+ +G A+ + + P+ SG YVLLSN+YA+ G+W DV VRK M +G+
Sbjct: 568 LAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVT 627
Query: 535 KMPGAS 540
K PG S
Sbjct: 628 KQPGCS 633
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 157/313 (50%), Gaps = 37/313 (11%)
Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
+H SV+K G +F N L+ Y KCG L++ R+V + MP +++ TWNS+V G + G
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101
Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
DEA + R M PE ++ +WN M+
Sbjct: 102 LDEADSLFRSM-----------------------PE--------------RDQCTWNSMV 124
Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
+ +A + EA+ + M G N S ASVL AC L+ + G ++H + +
Sbjct: 125 SGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFL 184
Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
++ + +ALVDMY+KCG++ +A+ VFD+M ++VVSW S+I+ + +G +A+ +F M
Sbjct: 185 SDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMM 244
Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
L S + PD + SV+SAC+ ++ G+ + + KL I VD+ + +
Sbjct: 245 LESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSR 304
Query: 452 VEEAYDLIKQMPM 464
++EA + MP+
Sbjct: 305 IKEARFIFDSMPI 317
>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370
OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
Length = 960
Score = 339 bits (869), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 202/559 (36%), Positives = 314/559 (56%), Gaps = 42/559 (7%)
Query: 26 YTLLSG-DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR 84
YT++S AC D + K K++HA ++ + S + L+ Y CG+M
Sbjct: 285 YTIVSALTAC----DGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAE 340
Query: 85 HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
+ ++ N +VV +N LI+ YV N +Y +AL + +M G D + ++ A +
Sbjct: 341 RILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLS 400
Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
+LL G+++H V+K G D NL GN L+ MY KC R M KD+++W +++A
Sbjct: 401 NLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIA 460
Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM--------- 255
GYAQN EAL++ R++ R++ D + S+L + ++ +++L VKE+
Sbjct: 461 GYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRA--SSVLKSMLIVKEIHCHILRKGL 518
Query: 256 -------------------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
F + K++VSW MI+ A N +EAV+L+ +M
Sbjct: 519 LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM 578
Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
G+ +++++ +L A LSAL GR+IH Y+ RK + A+VDMYA CG L
Sbjct: 579 VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL 638
Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
A+ VFD++ + ++ +TSMI+AYGM G G AV LF KM + PD I+F+++L AC
Sbjct: 639 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYAC 698
Query: 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI 470
SHAGLL+EGR + KIM +Y+L P EH+ CLVD+LGRA V EA++ +K M EP +
Sbjct: 699 SHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEV 758
Query: 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530
W +L+AAC +S +IG +AA + L P G VL+SN++A+ GRW DV++VR M +
Sbjct: 759 WCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKA 818
Query: 531 KGIKKMPGAS-VEMNDQVQ 548
G++K PG S +EM+ +V
Sbjct: 819 SGMEKHPGCSWIEMDGKVH 837
Score = 182 bits (462), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 121/404 (29%), Positives = 202/404 (50%), Gaps = 45/404 (11%)
Query: 48 KKLHAQIIINQHLHSNPSIGL-----KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
++LH++I + PS L KL+ YG CG + D VFDE+ ++ +N +I
Sbjct: 100 RQLHSRI-----FKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMI 154
Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
+YV+N AL +Y NM V G ++P +LKAC+ + G ++H +VK+G
Sbjct: 155 GAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYH 214
Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCRE 221
F N LV+MY K L ARR+ + K D V WNS+++ Y+ +G+ E L++ RE
Sbjct: 215 STGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFRE 274
Query: 222 MESLRIKPDADTM--------------------ASLLPSVTNTSPENVLS---------- 251
M P++ T+ AS+L S T++S V +
Sbjct: 275 MHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCG 334
Query: 252 ----VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
+ + +++N ++V+WN +I Y N M EA++ + M G + + +S+ S++
Sbjct: 335 KMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIA 394
Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
A G LS LL G ++H YV + NL++ N L+DMY+KC F +M +D++S
Sbjct: 395 ASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLIS 454
Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
WT++I+ Y + +A+ LF + + D + S+L A S
Sbjct: 455 WTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASS 498
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 16/231 (6%)
Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
+++F ++ ++ +WN MI Y +N PA A+ LY M V G+ S ++L AC L
Sbjct: 136 EKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKL 195
Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSM 371
+ G ++H + + + NALV MYAK L+ AR +FD + + D V W S+
Sbjct: 196 RDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSI 255
Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
+S+Y SG+ + + LF +M M+G P+S VS L+AC +G Y K+ E +
Sbjct: 256 LSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTAC-------DGFSYAKLGKEIHA 308
Query: 432 LVPR-----IEHFAC--LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
V + E + C L+ + R GK+ +A +++QM + W SL+
Sbjct: 309 SVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMN-NADVVTWNSLI 358
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 117/276 (42%), Gaps = 49/276 (17%)
Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE---NALVDMYAKCGSLTEARTVF 357
+ A VL CG A+ GR++H + K P+ L+ LV MY KCGSL +A VF
Sbjct: 82 AFAYVLELCGKRRAVSQGRQLHSRI--FKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVF 139
Query: 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS------ 411
D+M + +W +MI AY +G+ A+AL+ M + G+ +F ++L AC+
Sbjct: 140 DEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIR 199
Query: 412 -----HAGLLEEG------------------------RYYFKIMTEQYKLVPRIEHFACL 442
H+ L++ G R F E+ V + +
Sbjct: 200 SGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVL----WNSI 255
Query: 443 VDLLGRAGKVEEAYDLIKQMPME---PNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
+ +GK E +L ++M M PN S + AC +S +G + +
Sbjct: 256 LSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSST 315
Query: 500 NQSGYYV--LLSNIYAKAGRWGDVKRVRKFMNSKGI 533
+ S YV L +Y + G+ +R+ + MN+ +
Sbjct: 316 HSSELYVCNALIAMYTRCGKMPQAERILRQMNNADV 351
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 335 bits (860), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 187/546 (34%), Positives = 300/546 (54%), Gaps = 39/546 (7%)
Query: 43 DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
D++ + H+ III + L N +G L+ Y CG + D R +F+ + +++ V +N +I
Sbjct: 443 DLEMGSQFHS-IIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTII 501
Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
SYV + +A ++K M++ G D LKAC+ + L G Q+HC VK GLD
Sbjct: 502 GSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLD 561
Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
+L G+ L+ MY KCG +K+AR+V + +P VV+ N+++AGY+QN +EA+ + +EM
Sbjct: 562 RDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQN-NLEEAVVLFQEM 620
Query: 223 ESLRIKPDADTMASLLPSVTN-------------------TSPENVLSVK---------- 253
+ + P T A+++ + +S L +
Sbjct: 621 LTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRG 680
Query: 254 -----EMFLKLDN-KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
+F +L + K++V W M++ ++ N EA+ Y +M G+ P+ + +VL
Sbjct: 681 MTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLR 740
Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVV 366
C LS+L GR IH + + N L+DMYAKCG + + VFD+MR + +VV
Sbjct: 741 VCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVV 800
Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
SW S+I+ Y +G DA+ +F M S + PD I F+ VL+ACSHAG + +GR F++M
Sbjct: 801 SWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMM 860
Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
QY + R++H AC+VDLLGR G ++EA D I+ ++P+ R+W SL+ AC ++ +
Sbjct: 861 IGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIR 920
Query: 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMND 545
G ++A+ + L P S YVLLSNIYA G W +RK M +G+KK+PG S +++
Sbjct: 921 GEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQ 980
Query: 546 QVQIIA 551
+ I A
Sbjct: 981 RTHIFA 986
Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 143/518 (27%), Positives = 250/518 (48%), Gaps = 45/518 (8%)
Query: 50 LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
+HA+ I L SN +G L+ Y C +M VF+ + KN VF+N +IR Y +N
Sbjct: 349 VHAEAI-KLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNG 407
Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
+ + ++ +M G++ D +T+ +L C+ S+ L +G Q H ++K L NLF GN
Sbjct: 408 ESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGN 467
Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
LV MY KCG L++AR++ M +D VTWN+++ Y Q+ EA D+ + M I
Sbjct: 468 ALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVS 527
Query: 230 DADTMASLLPSVTNT------SPENVLSVK---------------------------EMF 256
D +AS L + T+ + LSVK ++F
Sbjct: 528 DGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVF 587
Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
L ++VS N +IA Y+ N++ EAV L+ +M G+ P+ I+ A+++ AC +L
Sbjct: 588 SSLPEWSVVSMNALIAGYSQNNLE-EAVVLFQEMLTRGVNPSEITFATIVEACHKPESLT 646
Query: 317 LGRKIHRYVERKKLQPNLR-LENALVDMYAKCGSLTEARTVFDQMRC-QDVVSWTSMISA 374
LG + H + ++ L +L+ MY +TEA +F ++ + +V WT M+S
Sbjct: 647 LGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSG 706
Query: 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
+ +G +A+ + +M G+ PD FV+VL CS L EGR ++ + L
Sbjct: 707 HSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLI---FHLAH 763
Query: 435 RIEHFA--CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL--YSNMDIGILA 490
++ L+D+ + G ++ + + +M N W SL+ Y+ + I
Sbjct: 764 DLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFD 823
Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
+ H+ P++ + +L+ + AG+ D +++ + M
Sbjct: 824 SMRQSHIMPDEITFLGVLTAC-SHAGKVSDGRKIFEMM 860
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/446 (25%), Positives = 218/446 (48%), Gaps = 11/446 (2%)
Query: 37 ILDKYPD-----IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
+ D+ P ++ K +H++ +I + S +G ++ Y C Q+ FD
Sbjct: 64 VFDEMPQRLALALRIGKAVHSKSLI-LGIDSEGRLGNAIVDLYAKCAQVSYAEKQFD-FL 121
Query: 92 NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
K+V +N ++ Y + L + ++ + P+ +T+ VL C+ ++ G Q
Sbjct: 122 EKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQ 181
Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
IHCS++K+GL+ N + G LV MY KC + +ARRV + + V W + +GY + G
Sbjct: 182 IHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGL 241
Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
+EA+ V M +PD +++ + + + +F ++ + ++V+WNVMI
Sbjct: 242 PEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLG--KLKDARLLFGEMSSPDVVAWNVMI 299
Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
+ + A++ + M ++ ++ SVL A G ++ L LG +H + L
Sbjct: 300 SGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLA 359
Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
N+ + ++LV MY+KC + A VF+ + ++ V W +MI Y +G+ + + LF M
Sbjct: 360 SNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDM 419
Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
SG D F S+LS C+ + LE G + I+ ++ KL + LVD+ + G
Sbjct: 420 KSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKK-KLAKNLFVGNALVDMYAKCGA 478
Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAA 477
+E+A + ++M N W +++ +
Sbjct: 479 LEDARQIFERMCDRDN-VTWNTIIGS 503
Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 161/342 (47%), Gaps = 37/342 (10%)
Query: 176 GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA 235
G+C K +R+V ++MP R AL + + + S + D+
Sbjct: 54 GQCKLFK-SRKVFDEMPQ-----------------RLALALRIGKAVHSKSLILGIDSEG 95
Query: 236 SLLPSVTNTSPENV-LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
L ++ + + +S E K++ +WN M+++Y++ P + + ++ + +
Sbjct: 96 RLGNAIVDLYAKCAQVSYAEKQFDFLEKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQ 155
Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
I PN + + VL C + + GR+IH + + L+ N ALVDMYAKC +++AR
Sbjct: 156 IFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDAR 215
Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
VF+ + + V WT + S Y +G +AV +F +M G PD +AFV+V++ G
Sbjct: 216 RVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLG 275
Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG----KVEEAYDLIKQMPMEPNERI 470
L++ R F M+ P + + ++ G+ G +E +++ ++ ++
Sbjct: 276 KLKDARLLFGEMSS-----PDVVAWNVMISGHGKRGCETVAIEYFFNM-RKSSVKSTRST 329
Query: 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
GS+++A + +N+D+G++ L L SNIY
Sbjct: 330 LGSVLSAIGIVANLDLGLVVHAEAIKLG--------LASNIY 363
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 334 bits (856), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 184/546 (33%), Positives = 305/546 (55%), Gaps = 39/546 (7%)
Query: 42 PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101
P ++ K++HA I+ L + S+ L+ +Y CG+++ +F+ + NKN++ + L
Sbjct: 263 PFLEGGKQIHAHIL-RYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTL 321
Query: 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
+ Y N L+ +A+ ++ +MS G PD Y +L +C+ ++L G Q+H +K L
Sbjct: 322 LSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANL 381
Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNG---RFDEALDV 218
+ + N L+ MY KC CL +AR+V + + DVV +N+M+ GY++ G EAL++
Sbjct: 382 GNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNI 441
Query: 219 CREMESLRIKPDADTMASLLPSVTNTSP------------------------------EN 248
R+M I+P T SLL + + + N
Sbjct: 442 FRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSN 501
Query: 249 VLSVKEMFLKLDN---KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305
+K+ L D K+LV WN M A Y S EA++L+L++++ P+ + A++
Sbjct: 502 CYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANM 561
Query: 306 LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
+ A G+L+++ LG++ H + ++ L+ N + NAL+DMYAKCGS +A FD +DV
Sbjct: 562 VTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDV 621
Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKI 425
V W S+IS+Y G+G A+ + KM+ G+ P+ I FV VLSACSHAGL+E+G F++
Sbjct: 622 VCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFEL 681
Query: 426 MTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
M ++ + P EH+ C+V LLGRAG++ +A +LI++MP +P +W SL++ C N++
Sbjct: 682 ML-RFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVE 740
Query: 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMN 544
+ AA+ P SG + +LSNIYA G W + K+VR+ M +G+ K PG S + +N
Sbjct: 741 LAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGIN 800
Query: 545 DQVQII 550
+V I
Sbjct: 801 KEVHIF 806
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/423 (27%), Positives = 210/423 (49%), Gaps = 46/423 (10%)
Query: 28 LLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVF 87
LL A +D+L Y ++ +H QII+ L + + L+ Y G MV R VF
Sbjct: 50 LLQLRASDDLL-HYQNV-----VHGQIIV-WGLELDTYLSNILINLYSRAGGMVYARKVF 102
Query: 88 DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD-PDCYTYPCVLKACSG--SN 144
+++ +N+V ++ ++ + ++ +Y ++L V+ D P+ Y ++ACSG
Sbjct: 103 EKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGR 162
Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
+ Q+ +VK G D +++ G L+ Y K G + AR V + +P K VTW +M++
Sbjct: 163 GRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMIS 222
Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT---------------------- 242
G + GR +L + ++ + PD ++++L + +
Sbjct: 223 GCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEM 282
Query: 243 NTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291
+ S NVL + ++F + NKN++SW +++ Y N++ EA++L+ M
Sbjct: 283 DASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMS 342
Query: 292 VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351
G++P+ + +S+L +C L AL G ++H Y + L + + N+L+DMYAKC LT
Sbjct: 343 KFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLT 402
Query: 352 EARTVFDQMRCQDVVSWTSMISAY---GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
+AR VFD DVV + +MI Y G + ++A+ +F M + P + FVS+L
Sbjct: 403 DARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLR 462
Query: 409 ACS 411
A +
Sbjct: 463 ASA 465
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/428 (25%), Positives = 208/428 (48%), Gaps = 39/428 (9%)
Query: 66 IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
+G L+ Y G + R VFD + K+ V + +I V Y +L ++ +
Sbjct: 185 VGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDN 244
Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
PD Y VL ACS L G QIH +++ GL+ + N L+ Y KCG + A
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAH 304
Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS----- 240
++ N MP+K++++W ++++GY QN EA+++ M +KPD +S+L S
Sbjct: 305 KLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLH 364
Query: 241 ----------------------VTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIA 272
VTN+ + + +++F ++V +N MI
Sbjct: 365 ALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIE 424
Query: 273 VYANNSMP---AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329
Y+ EA++++ M I P+ ++ S+L A L++L L ++IH + +
Sbjct: 425 GYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYG 484
Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
L ++ +AL+D+Y+ C L ++R VFD+M+ +D+V W SM + Y + +A+ LF
Sbjct: 485 LNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFL 544
Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGR 448
++ +S PD F ++++A + ++ G+ ++ +++ + P I + L+D+ +
Sbjct: 545 ELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITN--ALLDMYAK 602
Query: 449 AGKVEEAY 456
G E+A+
Sbjct: 603 CGSPEDAH 610
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 114/230 (49%), Gaps = 9/230 (3%)
Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGD 311
+++F K+ +NLVSW+ M++ ++ + E++ ++L+ PN ++S + AC
Sbjct: 99 RKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSG 158
Query: 312 LSALLLGR----KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
L GR ++ ++ + ++ + L+D Y K G++ AR VFD + + V+
Sbjct: 159 LDGR--GRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVT 216
Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427
WT+MIS G+ Y ++ LF +++ + PD +VLSACS LE G+ +
Sbjct: 217 WTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHIL 276
Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
+Y L L+D + G+V A+ L MP N W +L++
Sbjct: 277 -RYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMP-NKNIISWTTLLSG 324
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFS 389
L+ + L N L+++Y++ G + AR VF++M +++VSW++M+SA G +++ +F
Sbjct: 75 LELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFL 134
Query: 390 KMLMSGL-CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR-----IEHFACLV 443
+ + P+ S + ACS GL +GR + + Q LV + L+
Sbjct: 135 EFWRTRKDSPNEYILSSFIQACS--GL--DGRGRWMVFQLQSFLVKSGFDRDVYVGTLLI 190
Query: 444 DLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
D + G ++ A + +P E + W ++++ C
Sbjct: 191 DFYLKDGNIDYARLVFDALP-EKSTVTWTTMISGC 224
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 333 bits (853), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 181/509 (35%), Positives = 283/509 (55%), Gaps = 37/509 (7%)
Query: 70 LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
L+ Y G++ R VFD + N++V+ +N +I Y N DAL ++ M D D
Sbjct: 158 LLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLD 217
Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
T +L C L +G +H V + L + N LV MY KCG + EAR V +
Sbjct: 218 HATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFD 277
Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP---------- 239
M +DV+TW M+ GY ++G + AL++CR M+ ++P+A T+ASL+
Sbjct: 278 RMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVND 337
Query: 240 -------SVTNTSPENVL---SVKEMFLKLDNKNLV-------------SWNVMIAVYAN 276
+V +++ S+ M+ K +L W+ +IA
Sbjct: 338 GKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQ 397
Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
N + ++A+ L+ +M +EPN ++ S+LPA L+ L IH Y+ + +L
Sbjct: 398 NELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDA 457
Query: 337 ENALVDMYAKCGSLTEARTVF----DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
LV +Y+KCG+L A +F ++ + +DVV W ++IS YGM G G++A+ +F +M+
Sbjct: 458 ATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMV 517
Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
SG+ P+ I F S L+ACSH+GL+EEG F+ M E YK + R H+ C+VDLLGRAG++
Sbjct: 518 RSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRL 577
Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
+EAY+LI +P EP +WG+L+AAC + N+ +G +AA+ +F L P +G YVLL+NIY
Sbjct: 578 DEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIY 637
Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
A GRW D+++VR M + G++K PG S
Sbjct: 638 AALGRWKDMEKVRSMMENVGLRKKPGHST 666
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 124/482 (25%), Positives = 233/482 (48%), Gaps = 49/482 (10%)
Query: 44 IKTLKKLHAQII----INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
I K LH +I ++ H+ S S+ TY CG + R +F+E+ +++ +N
Sbjct: 31 ISKTKALHCHVITGGRVSGHILSTLSV------TYALCGHITYARKLFEEMPQSSLLSYN 84
Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFD--PDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
++IR YV LY+DA+ V+ M G PD YTYP V KA S+ +GL +H ++
Sbjct: 85 IVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRIL 144
Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
+ + + N L+AMY G ++ AR V + M ++DV++WN+M++GY +NG ++AL
Sbjct: 145 RSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALM 204
Query: 218 VCREMESLRIKPDADTMASLLP------------SVTNTSPENVLSVK--------EMFL 257
+ M + + D T+ S+LP +V E L K M+L
Sbjct: 205 MFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYL 264
Query: 258 K-------------LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
K ++ +++++W MI Y + A++L M+ G+ PNA+++AS
Sbjct: 265 KCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIAS 324
Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
++ CGD + G+ +H + R+++ ++ +E +L+ MYAKC + VF
Sbjct: 325 LVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYH 384
Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
W+++I+ + DA+ LF +M + P+ S+L A + L +
Sbjct: 385 TGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHC 444
Query: 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL---IKQMPMEPNERIWGSLVAACCLY 481
+T+ + ++ LV + + G +E A+ + I++ + +WG+L++ ++
Sbjct: 445 YLTKT-GFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMH 503
Query: 482 SN 483
+
Sbjct: 504 GD 505
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 111/244 (45%), Gaps = 17/244 (6%)
Query: 7 LCR--HFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNP 64
LCR F +P + S L+S C D L + K LH + Q ++S+
Sbjct: 306 LCRLMQFEGVRPNAVTIAS----LVS--VCGDALK----VNDGKCLHGWAV-RQQVYSDI 354
Query: 65 SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
I L+ Y C ++ VF + + ++ +I V N L DAL ++K M
Sbjct: 355 IIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRRE 414
Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
+P+ T +L A + L + IHC + K G +L GLV +Y KCG L+ A
Sbjct: 415 DVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESA 474
Query: 185 RRVLNDM----PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
++ N + SKDVV W ++++GY +G AL V EM + P+ T S L +
Sbjct: 475 HKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNA 534
Query: 241 VTNT 244
+++
Sbjct: 535 CSHS 538
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 332 bits (850), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 174/497 (35%), Positives = 280/497 (56%), Gaps = 40/497 (8%)
Query: 98 FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
+NV +R L+ +++ +Y++M G PD +++P +LK+C+ + + G Q+HC V
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP--SKDVVTWNSMVAGYAQNGRFDEA 215
K G + F L++MY KCG + +AR+V + P S+ V +N++++GY N + +A
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPE---------------------------- 247
+ R M+ + D+ TM L+P T PE
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVP--LCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFI 198
Query: 248 -------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
+V + + +F ++ K L++WN +I+ Y+ N + + ++LY QM+ G+ P+
Sbjct: 199 TMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPF 258
Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
++ SVL +C L A +G ++ + VE PN+ + NA + MYA+CG+L +AR VFD M
Sbjct: 259 TLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIM 318
Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
+ +VSWT+MI YGM G G + LF M+ G+ PD FV VLSACSH+GL ++G
Sbjct: 319 PVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGL 378
Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
F+ M +YKL P EH++CLVDLLGRAG+++EA + I+ MP+EP+ +WG+L+ AC +
Sbjct: 379 ELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKI 438
Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
+ N+D+ LA + PN GYYVL+SNIY+ + + R+R M + +K PG S
Sbjct: 439 HKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYS 498
Query: 541 -VEMNDQVQIIALPLRS 556
VE +V + RS
Sbjct: 499 YVEHKGRVHLFLAGDRS 515
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/419 (26%), Positives = 191/419 (45%), Gaps = 40/419 (9%)
Query: 48 KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDE--ITNKNVVFFNVLIRSY 105
++LH + + P + L+ Y CG + D R VF+E +++ V +N LI Y
Sbjct: 73 QQLHCHVT-KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGY 131
Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
N DA ++++ M G D T ++ C+ L +G +H VK GLD +
Sbjct: 132 TANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEV 191
Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
N + MY KCG ++ RR+ ++MP K ++TWN++++GY+QNG + L++ +M+S
Sbjct: 192 AVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSS 251
Query: 226 RIKPDADTMASLLPS---------------------------VTNTSPE------NVLSV 252
+ PD T+ S+L S V+N S N+
Sbjct: 252 GVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKA 311
Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
+ +F + K+LVSW MI Y + M + L+ M GI P+ VL AC
Sbjct: 312 RAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHS 371
Query: 313 SALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTS 370
G ++ R ++R+ KL+P + LVD+ + G L EA + M + D W +
Sbjct: 372 GLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGA 431
Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
++ A + A F+K++ P++I + ++S +EG + ++M +
Sbjct: 432 LLGACKIHKNVDMAELAFAKVIE--FEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRE 488
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 330 bits (845), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 168/460 (36%), Positives = 260/460 (56%), Gaps = 39/460 (8%)
Query: 92 NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
N +V +N +I YVN Y +AL + + M G + D +TYP V++AC+ + L +G Q
Sbjct: 248 NMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQ 307
Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
+H V++ D++ N LV++Y KCG EAR + MP+KD+V+WN++++GY +G
Sbjct: 308 VHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGH 366
Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI 271
EA K +F ++ KN++SW +MI
Sbjct: 367 IGEA-------------------------------------KLIFKEMKEKNILSWMIMI 389
Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
+ A N E + L+ M+ G EP + + + +C L A G++ H + +
Sbjct: 390 SGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFD 449
Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
+L NAL+ MYAKCG + EAR VF M C D VSW ++I+A G G G +AV ++ +M
Sbjct: 450 SSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEM 509
Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
L G+ PD I ++VL+ACSHAGL+++GR YF M Y++ P +H+A L+DLL R+GK
Sbjct: 510 LKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGK 569
Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
+A +I+ +P +P IW +L++ C ++ NM++GI+AAD +F L P G Y+LLSN+
Sbjct: 570 FSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNM 629
Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
+A G+W +V RVRK M +G+KK S +EM QV
Sbjct: 630 HAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTF 669
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/452 (26%), Positives = 200/452 (44%), Gaps = 82/452 (18%)
Query: 69 KLMRT-----YGACGQMVDTRHVFDE--ITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
K+ RT Y A G + R VF++ + ++ V +N +I + +N Y A++++ M
Sbjct: 80 KIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKM 139
Query: 122 SVHGFDPDCYTYPCVLKACS-GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
GF PD +T+ VL + ++ +Q H + +K G Y N LV++Y KC
Sbjct: 140 KHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCAS 199
Query: 181 ----LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS 236
L AR+V +++ KD +W +M+ GY +NG FD ++ M+
Sbjct: 200 SPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMD------------- 246
Query: 237 LLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE 296
DN LV++N MI+ Y N EA+++ +M GIE
Sbjct: 247 -----------------------DNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIE 283
Query: 297 PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTV 356
+ + SV+ AC L LG+++H YV R++ + +N+LV +Y KCG EAR +
Sbjct: 284 LDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAI 342
Query: 357 FDQMRCQDVVSWTSMISAYGMSGQ-------------------------------GYDAV 385
F++M +D+VSW +++S Y SG G + +
Sbjct: 343 FEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGL 402
Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
LFS M G P AF + +C+ G G+ Y + + + L+ +
Sbjct: 403 KLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLL-KIGFDSSLSAGNALITM 461
Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
+ G VEEA + + MP + W +L+AA
Sbjct: 462 YAKCGVVEEARQVFRTMPC-LDSVSWNALIAA 492
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 155/365 (42%), Gaps = 90/365 (24%)
Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
SL + +H +++ G N L+ +Y K L AR++ +++ D + +MV
Sbjct: 28 TSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMV 87
Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKN 263
+GY +G D+ +L V +P + ++
Sbjct: 88 SGYCASG------DI-----------------TLARGVFEKAPVCM------------RD 112
Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRK--- 320
V +N MI +++N+ A++L+ +M+ G +P+ + ASVL L+ + K
Sbjct: 113 TVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAG---LALVADDEKQCV 169
Query: 321 -IHRYVERKKLQPNLRLENALVDMYAKCGS----LTEARTVFDQMRCQDVVSWTSMISAY 375
H + + NALV +Y+KC S L AR VFD++ +D SWT+M++ Y
Sbjct: 170 QFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGY 229
Query: 376 GMSG-------------------------QGY-------DAVALFSKMLMSGLCPDSIAF 403
+G GY +A+ + +M+ SG+ D +
Sbjct: 230 VKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTY 289
Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA-----CLVDLLGRAGKVEEAYDL 458
SV+ AC+ AGLL+ G+ + + V R E F+ LV L + GK +EA +
Sbjct: 290 PSVIRACATAGLLQLGK-------QVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAI 342
Query: 459 IKQMP 463
++MP
Sbjct: 343 FEKMP 347
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 86/220 (39%), Gaps = 54/220 (24%)
Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
++L L R +H + QP + N L+D+Y K L AR +FD++ D ++ T+M+
Sbjct: 28 TSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMV 87
Query: 373 SAYGMSGQ---------------------------------GYDAVALFSKMLMSGLCPD 399
S Y SG GY A+ LF KM G PD
Sbjct: 88 SGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPD 147
Query: 400 SIAFVSVLSACS------------HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447
+ F SVL+ + HA L+ G Y I + LV A LL
Sbjct: 148 NFTFASVLAGLALVADDEKQCVQFHAAALKSGAGY--ITSVSNALVSVYSKCASSPSLLH 205
Query: 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIG 487
A KV +D I +E +ER W +++ D+G
Sbjct: 206 SARKV---FDEI----LEKDERSWTTMMTGYVKNGYFDLG 238
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 112/257 (43%), Gaps = 21/257 (8%)
Query: 48 KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
++ HAQ++ S+ S G L+ Y CG + + R VF + + V +N LI +
Sbjct: 437 QQYHAQLL-KIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQ 495
Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
+ +A+ VY+ M G PD T VL ACS + + G + S+ V Y +
Sbjct: 496 HGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETV---YRIPP 552
Query: 168 GNG----LVAMYGKCGCLKEARRVLNDMPSKDVVT-WNSMVAGYAQNGRFDEALDVCREM 222
G L+ + + G +A V+ +P K W ++++G +G + L +
Sbjct: 553 GADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNME--LGIIAAD 610
Query: 223 ESLRIKPDADTMASLLPSVTNTSP--ENVLSVKEMFLKLDNKNLV--SW-----NVMIAV 273
+ + P+ D LL ++ + E V V+++ K V SW V +
Sbjct: 611 KLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFL 670
Query: 274 YANNSMP-AEAVDLYLQ 289
+ S P AEAV +YLQ
Sbjct: 671 VDDTSHPEAEAVYIYLQ 687
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 330 bits (845), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 173/537 (32%), Positives = 303/537 (56%), Gaps = 36/537 (6%)
Query: 49 KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
+LH ++++ + SI L+ Y CG+ D +F ++ + V +N +I YV +
Sbjct: 260 QLHGLVVVSG-VDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQS 318
Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
L ++L + M G PD T+ +L + S +L QIHC +++ + ++F
Sbjct: 319 GLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLT 378
Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
+ L+ Y KC + A+ + + S DVV + +M++GY NG + ++L++ R + ++I
Sbjct: 379 SALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKIS 438
Query: 229 PDADTMASLLPSV----------------TNTSPENVLSVK-----------------EM 255
P+ T+ S+LP + +N ++ E+
Sbjct: 439 PNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEI 498
Query: 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
F +L +++VSWN MI A + P+ A+D++ QM V GI + +S+++ L AC +L +
Sbjct: 499 FERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSE 558
Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
G+ IH ++ + L ++ E+ L+DMYAKCG+L A VF M+ +++VSW S+I+A
Sbjct: 559 SFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAAC 618
Query: 376 GMSGQGYDAVALFSKML-MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434
G G+ D++ LF +M+ SG+ PD I F+ ++S+C H G ++EG +F+ MTE Y + P
Sbjct: 619 GNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQP 678
Query: 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
+ EH+AC+VDL GRAG++ EAY+ +K MP P+ +WG+L+ AC L+ N+++ +A+ +
Sbjct: 679 QQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKL 738
Query: 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
L P+ SGYYVL+SN +A A W V +VR M + ++K+PG S +E+N + +
Sbjct: 739 MDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLF 795
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 116/471 (24%), Positives = 217/471 (46%), Gaps = 38/471 (8%)
Query: 48 KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFD--EITNKNVVFFNVLIRSY 105
K++HA +I+N + + +++ Y CG D +F ++ ++ +N +I S+
Sbjct: 55 KQVHAFLIVNS-ISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSF 113
Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
V N L AL Y M G PD T+PC++KAC + + +V +G+D N
Sbjct: 114 VRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNE 173
Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
F + L+ Y + G + ++ + + KD V WN M+ GYA+ G D + M
Sbjct: 174 FVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMD 233
Query: 226 RIKPDADTMASLLPSVTNT----------------------SPENVL-----------SV 252
+I P+A T +L + S +N L
Sbjct: 234 QISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDA 293
Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312
++F + + V+WN MI+ Y + + E++ + +M G+ P+AI+ +S+LP+
Sbjct: 294 SKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKF 353
Query: 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI 372
L ++IH Y+ R + ++ L +AL+D Y KC ++ A+ +F Q DVV +T+MI
Sbjct: 354 ENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMI 413
Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432
S Y +G D++ +F ++ + P+ I VS+L L+ GR + ++
Sbjct: 414 SGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKK-GF 472
Query: 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
R ++D+ + G++ AY++ +++ + + W S++ C N
Sbjct: 473 DNRCNIGCAVIDMYAKCGRMNLAYEIFERLS-KRDIVSWNSMITRCAQSDN 522
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 142/317 (44%), Gaps = 35/317 (11%)
Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN--DMPS 193
+L+ACS N L G Q+H ++ + + + ++ MY CG + ++ D+
Sbjct: 41 LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRR 100
Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP---SVTNTSPENVL 250
+ WNS+++ + +NG ++AL +M + PD T L+ ++ N + L
Sbjct: 101 SSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFL 160
Query: 251 S------------------------------VKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
S ++F ++ K+ V WNVM+ YA
Sbjct: 161 SDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGAL 220
Query: 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
+ + M + I PNA++ VL C + LG ++H V + ++N+L
Sbjct: 221 DSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSL 280
Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
+ MY+KCG +A +F M D V+W MIS Y SG +++ F +M+ SG+ PD+
Sbjct: 281 LSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDA 340
Query: 401 IAFVSVLSACSHAGLLE 417
I F S+L + S LE
Sbjct: 341 ITFSSLLPSVSKFENLE 357
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/373 (23%), Positives = 167/373 (44%), Gaps = 37/373 (9%)
Query: 38 LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
+ K+ +++ K++H I+ + + + L+ Y C + +++F + + +VV
Sbjct: 350 VSKFENLEYCKQIHCYIM-RHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVV 408
Query: 98 FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
F +I Y++N LY D+L +++ + P+ T +L +L +G ++H ++
Sbjct: 409 FTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFII 468
Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
K G D G ++ MY KCG + A + + +D+V+WNSM+ AQ+ A+D
Sbjct: 469 KKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAID 528
Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSPE------------------------------ 247
+ R+M I D ++++ L + N E
Sbjct: 529 IFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYA 588
Query: 248 ---NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVA 303
N+ + +F + KN+VSWN +IA N+ +++ L+ +M E GI P+ I+
Sbjct: 589 KCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFL 648
Query: 304 SVLPACGDLSALLLGRKIHR-YVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
++ +C + + G + R E +QP +VD++ + G LTEA M
Sbjct: 649 EIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPF 708
Query: 363 -QDVVSWTSMISA 374
D W +++ A
Sbjct: 709 PPDAGVWGTLLGA 721
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330
IA Y S+P +L+ + P +S+ +L AC + + L G+++H ++ +
Sbjct: 14 IAPY-KKSLPLRNSSRFLEETI----PRRLSL--LLQACSNPNLLRQGKQVHAFLIVNSI 66
Query: 331 QPNLRLENALVDMYAKCGSLTEARTVFDQ--MRCQDVVSWTSMISAYGMSGQGYDAVALF 388
+ + ++ MYA CGS ++ +F + +R + W S+IS++ +G A+A +
Sbjct: 67 SGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFY 126
Query: 389 SKMLMSGLCPDSIAFVSVLSAC 410
KML G+ PD F ++ AC
Sbjct: 127 FKMLCFGVSPDVSTFPCLVKAC 148
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 329 bits (844), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 173/539 (32%), Positives = 294/539 (54%), Gaps = 35/539 (6%)
Query: 44 IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
+ LK++H +I N HLH + + L++ Q + +F N+ +N LI
Sbjct: 26 VNHLKQIHVSLI-NHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLIN 84
Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
+VNN+L+++ L ++ ++ HG +T+P VLKAC+ ++S +G+ +H VVK G ++
Sbjct: 85 GFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNH 144
Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
++ L+++Y G L +A ++ +++P + VVTW ++ +GY +GR EA+D+ ++M
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMV 204
Query: 224 SLRIKPDADTMASLLP--------------------------SVTNTSPENVLS------ 251
+ +KPD+ + +L S T+ N+ +
Sbjct: 205 EMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKME 264
Query: 252 -VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
+ +F + K++V+W+ MI YA+NS P E ++L+LQM ++P+ S+ L +C
Sbjct: 265 KARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCA 324
Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
L AL LG ++R + NL + NAL+DMYAKCG++ VF +M+ +D+V +
Sbjct: 325 SLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNA 384
Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
IS +G + A+F + G+ PD F+ +L C HAGL+++G +F ++ Y
Sbjct: 385 AISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVY 444
Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
L +EH+ C+VDL GRAG +++AY LI MPM PN +WG+L++ C L + +
Sbjct: 445 ALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETV 504
Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
+ L P +G YV LSNIY+ GRW + VR MN KG+KK+PG S +E+ +V
Sbjct: 505 LKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVH 563
>sp|Q9FGR2|PP436_ARATH Pentatricopeptide repeat-containing protein At5g59600
OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1
Length = 534
Score = 328 bits (841), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 175/474 (36%), Positives = 282/474 (59%), Gaps = 3/474 (0%)
Query: 50 LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
LHA ++ + + I KL+ Y CG+++D R VFDE+ +++ V+I + N
Sbjct: 38 LHAHLVTSG-IARLTRIAAKLVTFYVECGKVLDARKVFDEMPKRDISGCVVMIGACARNG 96
Query: 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
Y ++L ++ M G D + P +LKA G IHC V+K + + F +
Sbjct: 97 YYQESLDFFREMYKDGLKLDAFIVPSLLKASRNLLDREFGKMIHCLVLKFSYESDAFIVS 156
Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
L+ MY K G + AR+V +D+ +D+V +N+M++GYA N + DEAL++ ++M+ L IKP
Sbjct: 157 SLIDMYSKFGEVGNARKVFSDLGEQDLVVFNAMISGYANNSQADEALNLVKDMKLLGIKP 216
Query: 230 DADTMASLLPSVTNTSPENVLSVKEMFLKLDN--KNLVSWNVMIAVYANNSMPAEAVDLY 287
D T +L+ ++ E +S + LD ++VSW +I+ +N +A D +
Sbjct: 217 DVITWNALISGFSHMRNEEKVSEILELMCLDGYKPDVVSWTSIISGLVHNFQNEKAFDAF 276
Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
QM HG+ PN+ ++ ++LPAC L+ + G++IH Y L+ + + +AL+DMY KC
Sbjct: 277 KQMLTHGLYPNSATIITLLPACTTLAYMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGKC 336
Query: 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL 407
G ++EA +F + + V++ SMI Y G AV LF +M +G D + F ++L
Sbjct: 337 GFISEAMILFRKTPKKTTVTFNSMIFCYANHGLADKAVELFDQMEATGEKLDHLTFTAIL 396
Query: 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN 467
+ACSHAGL + G+ F +M +Y++VPR+EH+AC+VDLLGRAGK+ EAY++IK M MEP+
Sbjct: 397 TACSHAGLTDLGQNLFLLMQNKYRIVPRLEHYACMVDLLGRAGKLVEAYEMIKAMRMEPD 456
Query: 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
+WG+L+AAC + NM++ +AA H+ L P SG +LL+++YA AG W V
Sbjct: 457 LFVWGALLAACRNHGNMELARIAAKHLAELEPENSGNGLLLTSLYANAGSWESV 510
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%)
Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
S ++ A G GR +H ++ + R+ LV Y +CG + +AR VFD+M
Sbjct: 18 SYVELIEANGRDRLFCRGRVLHAHLVTSGIARLTRIAAKLVTFYVECGKVLDARKVFDEM 77
Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
+D+ MI A +G +++ F +M GL D+ S+L A
Sbjct: 78 PKRDISGCVVMIGACARNGYYQESLDFFREMYKDGLKLDAFIVPSLLKA 126
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 327 bits (838), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 187/549 (34%), Positives = 304/549 (55%), Gaps = 50/549 (9%)
Query: 48 KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
K++HA + L N I L+ YG G++ ++ + +++V +N ++ S
Sbjct: 222 KQVHAYGLRKGEL--NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 279
Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLF 166
N +AL + M + G +PD +T VL ACS L G ++H +K G LD N F
Sbjct: 280 NEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 339
Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME-SL 225
G+ LV MY C + RRV + M + + WN+M+AGY+QN EAL + ME S
Sbjct: 340 VGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESA 399
Query: 226 RIKPDADTMASLLPSVTNTSP----------------------ENVLS-----------V 252
+ ++ TMA ++P+ + +N L
Sbjct: 400 GLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIA 459
Query: 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME-----------VHGIEPNAIS 301
+F K+++++LV+WN MI Y + +A+ L +M+ ++PN+I+
Sbjct: 460 MRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSIT 519
Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
+ ++LP+C LSAL G++IH Y + L ++ + +ALVDMYAKCG L +R VFDQ+
Sbjct: 520 LMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 579
Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
++V++W +I AYGM G G +A+ L M++ G+ P+ + F+SV +ACSH+G+++EG
Sbjct: 580 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 639
Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNER-IWGSLVAACCL 480
F +M Y + P +H+AC+VDLLGRAG+++EAY L+ MP + N+ W SL+ A +
Sbjct: 640 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 699
Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
++N++IG +AA ++ L PN + +YVLL+NIY+ AG W VR+ M +G++K PG S
Sbjct: 700 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 759
Query: 541 -VEMNDQVQ 548
+E D+V
Sbjct: 760 WIEHGDEVH 768
Score = 186 bits (472), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 153/575 (26%), Positives = 267/575 (46%), Gaps = 96/575 (16%)
Query: 43 DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
D++ K++HA + + + ++ L+ Y CG VFD I+ +N V +N LI
Sbjct: 112 DMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLI 171
Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG---SNSLLVGLQIHCSVVKV 159
S + + AL ++ M +P +T V+ ACS L++G Q+H ++
Sbjct: 172 SSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRK 231
Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
G + N F N LVAMYGK G L ++ +L +D+VTWN++++ QN + EAL+
Sbjct: 232 G-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYL 290
Query: 220 REMESLRIKPDADTMASLLPSVTN-----TSPE--------------------------- 247
REM ++PD T++S+LP+ ++ T E
Sbjct: 291 REMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCN 350
Query: 248 --NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNAISVAS 304
VLS + +F + ++ + WN MIA Y+ N EA+ L++ ME G+ N+ ++A
Sbjct: 351 CKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAG 410
Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
V+PAC A IH +V ++ L + ++N L+DMY++ G + A +F +M +D
Sbjct: 411 VVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRD 470
Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKML-----------MSGLCPDSIAFVSVLSACSHA 413
+V+W +MI+ Y S DA+ L KM L P+SI +++L +C+
Sbjct: 471 LVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAAL 530
Query: 414 GLLEEGR----YYFK------------------------IMTEQYKLVPR--IEHFACLV 443
L +G+ Y K + + + +P+ + + ++
Sbjct: 531 SALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVII 590
Query: 444 DLLGRAGKVEEAYDLIKQMPME---PNERIWGSLVAACCLYSNMDIGILAADHIFH-LAP 499
G G +EA DL++ M ++ PNE + S+ AAC +D G+ IF+ + P
Sbjct: 591 MAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL----RIFYVMKP 646
Query: 500 N-----QSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529
+ S +Y + ++ +AGR +K + MN
Sbjct: 647 DYGVEPSSDHYACVVDLLGRAGR---IKEAYQLMN 678
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 189/400 (47%), Gaps = 39/400 (9%)
Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
L+RS V + L +A+ Y +M V G PD Y +P +LKA + + +G QIH V K G
Sbjct: 68 LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG 127
Query: 161 LDYNLFN-GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
+ N LV +Y KCG +V + + ++ V+WNS+++ +++ AL+
Sbjct: 128 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAF 187
Query: 220 REMESLRIKPDADTMASLLPSVTNTS-PENVLSVKE---------------------MFL 257
R M ++P + T+ S++ + +N PE ++ K+ M+
Sbjct: 188 RCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYG 247
Query: 258 KL-------------DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
KL ++LV+WN +++ N EA++ +M + G+EP+ +++S
Sbjct: 248 KLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISS 307
Query: 305 VLPACGDLSALLLGRKIHRY-VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
VLPAC L L G+++H Y ++ L N + +ALVDMY C + R VFD M +
Sbjct: 308 VLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR 367
Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMS-GLCPDSIAFVSVLSACSHAGLLEEGRYY 422
+ W +MI+ Y + +A+ LF M S GL +S V+ AC +G
Sbjct: 368 KIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAI 427
Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
+ ++ R L+D+ R GK++ A + +M
Sbjct: 428 HGFVVKRGLDRDRFVQ-NTLMDMYSRLGKIDIAMRIFGKM 466
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/380 (27%), Positives = 178/380 (46%), Gaps = 50/380 (13%)
Query: 44 IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
++T K+LHA + N L N +G L+ Y C Q++ R VFD + ++ + +N +I
Sbjct: 318 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 377
Query: 104 SYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
Y N +AL ++ M G + T V+ AC S + IH VVK GLD
Sbjct: 378 GYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLD 437
Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
+ F N L+ MY + G + A R+ M +D+VTWN+M+ GY + ++AL + +M
Sbjct: 438 RDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKM 497
Query: 223 ESLR-----------IKPDADTMASLLPSVTNTSP------------ENVLSV------- 252
++L +KP++ T+ ++LPS S +N L+
Sbjct: 498 QNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSA 557
Query: 253 --------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
+++F ++ KN+++WNV+I Y + EA+DL M V G++PN
Sbjct: 558 LVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPN 617
Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKK--LQPNLRLENALVDMYAKCGSLTEARTV 356
++ SV AC + G +I YV + ++P+ +VD+ + G + EA +
Sbjct: 618 EVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQL 676
Query: 357 FDQM--RCQDVVSWTSMISA 374
+ M +W+S++ A
Sbjct: 677 MNMMPRDFNKAGAWSSLLGA 696
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 36/248 (14%)
Query: 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
W ++ +++ EAV Y+ M V GI+P+ + ++L A DL + LG++IH +V
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 327 RKKLQ-PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
+ ++ + N LV++Y KCG VFD++ ++ VSW S+IS+ + A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACS--------------HAGLLEEGRYYFKIMTEQYK 431
F ML + P S VSV++ACS HA L +G I+
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA 244
Query: 432 LVPRIEHFACLVDLLGRAG------------------KVEEAYDLIKQMPM---EPNERI 470
+ ++ A LLG G ++ EA + +++M + EP+E
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 304
Query: 471 WGSLVAAC 478
S++ AC
Sbjct: 305 ISSVLPAC 312
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 326 bits (836), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 182/530 (34%), Positives = 297/530 (56%), Gaps = 67/530 (12%)
Query: 86 VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
VF I N++ +N + R + + AL +Y M G P+ YT+P VLK+C+ S +
Sbjct: 90 VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKA 149
Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN---------------- 189
G QIH V+K+G D +L+ L++MY + G L++A +V +
Sbjct: 150 FKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKG 209
Query: 190 ---------------DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM 234
++P KDVV+WN+M++GYA+ G + EAL++ ++M ++PD TM
Sbjct: 210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 269
Query: 235 ASLLPSV----------------------TNTSPENVL-----------SVKEMFLKLDN 261
+++ + +N N L + +F +L
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY 329
Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
K+++SWN +I Y + ++ EA+ L+ +M G PN +++ S+LPAC L A+ +GR I
Sbjct: 330 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 389
Query: 322 HRYVER--KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
H Y+++ K + L +L+DMYAKCG + A VF+ + + + SW +MI + M G
Sbjct: 390 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHG 449
Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
+ + LFS+M G+ PD I FV +LSACSH+G+L+ GR+ F+ MT+ YK+ P++EH+
Sbjct: 450 RADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHY 509
Query: 440 ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
C++DLLG +G +EA ++I M MEP+ IW SL+ AC ++ N+++G A+++ + P
Sbjct: 510 GCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEP 569
Query: 500 NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
G YVLLSNIYA AGRW +V + R +N KG+KK+PG +S+E++ V
Sbjct: 570 ENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVH 619
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 167/347 (48%), Gaps = 37/347 (10%)
Query: 70 LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
L++ Y + G + + + +FDEI K+VV +N +I Y Y +AL ++K+M PD
Sbjct: 206 LIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPD 265
Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
T V+ AC+ S S+ +G Q+H + G NL N L+ +Y KCG L+ A +
Sbjct: 266 ESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFE 325
Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
+P KDV++WN+++ GY + EAL + +EM P+ TM S+LP+
Sbjct: 326 RLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDI 385
Query: 241 --------------VTNTSP------------ENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
VTN S ++ + ++F + +K+L SWN MI +
Sbjct: 386 GRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGF 445
Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPN 333
A + + DL+ +M GI+P+ I+ +L AC L LGR I R + + K+ P
Sbjct: 446 AMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPK 505
Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSG 379
L ++D+ G EA + + M + D V W S++ A M G
Sbjct: 506 LEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHG 552
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/418 (22%), Positives = 185/418 (44%), Gaps = 72/418 (17%)
Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGL---DYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192
+L C SL + IH ++K+GL +Y L + L A V +
Sbjct: 39 LLHNCKTLQSLRI---IHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQ 95
Query: 193 SKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP------ 246
+++ WN+M G+A + AL + M SL + P++ T +L S +
Sbjct: 96 EPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQ 155
Query: 247 --ENVLSV-------------------------KEMFLKLDNKNLVSWNVMIAVYAN--- 276
+VL + ++F K ++++VS+ +I YA+
Sbjct: 156 IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGY 215
Query: 277 -------------------NSMPA---------EAVDLYLQMEVHGIEPNAISVASVLPA 308
N+M + EA++L+ M + P+ ++ +V+ A
Sbjct: 216 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSA 275
Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
C ++ LGR++H +++ NL++ NAL+D+Y+KCG L A +F+++ +DV+SW
Sbjct: 276 CAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISW 335
Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428
++I Y +A+ LF +ML SG P+ + +S+L AC+H G ++ GR+ + +
Sbjct: 336 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDK 395
Query: 429 QYKLVPRIEHF-ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485
+ K V L+D+ + G +E A+ + + + + W +++ ++ D
Sbjct: 396 RLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRAD 452
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 101/195 (51%), Gaps = 3/195 (1%)
Query: 53 QIIINQH-LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLY 111
+ I+ H SN I L+ Y CG++ +F+ + K+V+ +N LI Y + LY
Sbjct: 289 HLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLY 348
Query: 112 YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK--VGLDYNLFNGN 169
+AL +++ M G P+ T +L AC+ ++ +G IH + K G+
Sbjct: 349 KEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRT 408
Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
L+ MY KCG ++ A +V N + K + +WN+M+ G+A +GR D + D+ M + I+P
Sbjct: 409 SLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQP 468
Query: 230 DADTMASLLPSVTNT 244
D T LL + +++
Sbjct: 469 DDITFVGLLSACSHS 483
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 325 bits (834), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 174/543 (32%), Positives = 289/543 (53%), Gaps = 40/543 (7%)
Query: 33 ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
AC ++ D+ KK+H Q++ + GL + Y CG++ VF++IT
Sbjct: 151 ACTEL----QDLDNGKKIHCQLVKVPSFDNVVLTGL--LDMYAKCGEIKSAHKVFNDITL 204
Query: 93 KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152
+NVV + +I YV N L + L ++ M + + YTY ++ AC+ ++L G
Sbjct: 205 RNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWF 264
Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
H +VK G++ + L+ MY KCG + ARRV N+ D+V W +M+ GY NG
Sbjct: 265 HGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSV 324
Query: 213 DEALDVCREMESLRIKPDADTMASLLPS---------------------VTNTSPENVL- 250
+EAL + ++M+ + IKP+ T+AS+L + +T+ N L
Sbjct: 325 NEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNVANALV 384
Query: 251 ----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
K +F K++V+WN +I+ ++ N EA+ L+ +M + PN +
Sbjct: 385 HMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGV 444
Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKL--QPNLRLENALVDMYAKCGSLTEARTVFD 358
+VAS+ AC L +L +G +H Y + ++ + AL+D YAKCG AR +FD
Sbjct: 445 TVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFD 504
Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
+ ++ ++W++MI YG G ++ LF +ML P+ F S+LSAC H G++ E
Sbjct: 505 TIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNE 564
Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
G+ YF M + Y P +H+ C+VD+L RAG++E+A D+I++MP++P+ R +G+ + C
Sbjct: 565 GKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGC 624
Query: 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
++S D+G + + L P+ + YYVL+SN+YA GRW K VR M +G+ K+ G
Sbjct: 625 GMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSKIAG 684
Query: 539 ASV 541
S
Sbjct: 685 HST 687
Score = 197 bits (502), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 152/536 (28%), Positives = 248/536 (46%), Gaps = 50/536 (9%)
Query: 34 CNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
C +L K +I +L++ H ++ L + SI KL+ YG G D R VFD+I
Sbjct: 47 CFLLLSKCTNIDSLRQSHG-VLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEP 105
Query: 94 NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
+ + V++R Y N + + +Y + HGF D + LKAC+ L G +IH
Sbjct: 106 DFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIH 165
Query: 154 CSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFD 213
C +VKV N+ GL+ MY KCG +K A +V ND+ ++VV W SM+AGY +N +
Sbjct: 166 CQLVKVPSFDNVVL-TGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCE 224
Query: 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPEN--------------------VLSVK 253
E L + M + + T +L+ + T S + V S+
Sbjct: 225 EGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLL 284
Query: 254 EMFLKL-------------DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
+M++K + +LV W MI Y +N EA+ L+ +M+ I+PN +
Sbjct: 285 DMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCV 344
Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
++ASVL CG + L LGR +H + + + + NALV MYAKC +A+ VF+
Sbjct: 345 TIASVLSGCGLIENLELGRSVHGLSIKVGIW-DTNVANALVHMYAKCYQNRDAKYVFEME 403
Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
+D+V+W S+IS + +G ++A+ LF +M + P+ + S+ SAC+ G L G
Sbjct: 404 SEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGS 463
Query: 421 YYFKIMTEQYKLVPRIEHFA-CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479
+ L H L+D + G + A LI E N W +++
Sbjct: 464 SLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSA-RLIFDTIEEKNTITWSAMIGG-- 520
Query: 480 LYSNMDIGILAADHIFHL-----APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530
Y I + + + PN+S + ++I + G G V +K+ +S
Sbjct: 521 -YGKQGDTIGSLELFEEMLKKQQKPNESTF----TSILSACGHTGMVNEGKKYFSS 571
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 324 bits (830), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 204/615 (33%), Positives = 317/615 (51%), Gaps = 68/615 (11%)
Query: 2 KAVVLLCRHFSTTK------PVQALVLSTQYTLLSGDACNDILDK---------YPDIKT 46
K V L CR+ S + P+ + + +T+L G A LDK Y D++
Sbjct: 74 KLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEP 133
Query: 47 -------LKKL---HAQIIINQHLH-----SNPSIGLKLM----RTYGACGQMVDTRHVF 87
L K+ A++ + + +H S S+ L M Y C Q+ + R VF
Sbjct: 134 VVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVF 193
Query: 88 DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLL 147
D + +++V +N ++ Y N + AL + K+M P T VL A S +
Sbjct: 194 DRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLIS 253
Query: 148 VGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA 207
VG +IH ++ G D + LV MY KCG L+ AR++ + M ++VV+WNSM+ Y
Sbjct: 254 VGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYV 313
Query: 208 QNGRFDEALDVCREMESLRIKP-DADTMASLLP--------------------------S 240
QN EA+ + ++M +KP D M +L S
Sbjct: 314 QNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVS 373
Query: 241 VTNT------SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
V N+ + V + MF KL ++ LVSWN MI +A N P +A++ + QM
Sbjct: 374 VVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRT 433
Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
++P+ + SV+ A +LS + IH V R L N+ + ALVDMYAKCG++ AR
Sbjct: 434 VKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIAR 493
Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
+FD M + V +W +MI YG G G A+ LF +M + P+ + F+SV+SACSH+G
Sbjct: 494 LIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSG 553
Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
L+E G F +M E Y + ++H+ +VDLLGRAG++ EA+D I QMP++P ++G++
Sbjct: 554 LVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAM 613
Query: 475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534
+ AC ++ N++ AA+ +F L P+ GY+VLL+NIY A W V +VR M +G++
Sbjct: 614 LGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLR 673
Query: 535 KMPGAS-VEMNDQVQ 548
K PG S VE+ ++V
Sbjct: 674 KTPGCSMVEIKNEVH 688
Score = 209 bits (532), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 137/505 (27%), Positives = 242/505 (47%), Gaps = 46/505 (9%)
Query: 37 ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
+L++ +K L+++ ++ L+ KL+ + G + + VF+ I +K V
Sbjct: 43 LLERCSSLKELRQI-LPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNV 101
Query: 97 FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
++ +++ + AL + M +P Y + +LK C L VG +IH +
Sbjct: 102 LYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLL 161
Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
VK G +LF GL MY KC + EAR+V + MP +D+V+WN++VAGY+QNG AL
Sbjct: 162 VKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMAL 221
Query: 217 DVCREMESLRIKPDADTMASLLPSVT------------------------NTSPE----- 247
++ + M +KP T+ S+LP+V+ N S
Sbjct: 222 EMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMY 281
Query: 248 ----NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
++ + +++F + +N+VSWN MI Y N P EA+ ++ +M G++P +SV
Sbjct: 282 AKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVM 341
Query: 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
L AC DL L GR IH+ L N+ + N+L+ MY KC + A ++F +++ +
Sbjct: 342 GALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSR 401
Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
+VSW +MI + +G+ DA+ FS+M + PD+ +VSV++A + + ++
Sbjct: 402 TLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIH 461
Query: 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV-------- 475
++ L + LVD+ + G + A LI M E + W +++
Sbjct: 462 GVVMRSC-LDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTHGF 519
Query: 476 --AACCLYSNMDIGILAADHIFHLA 498
AA L+ M G + + + L+
Sbjct: 520 GKAALELFEEMQKGTIKPNGVTFLS 544
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 9/177 (5%)
Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
A +L C L L R+I V + L + LV ++ + GS+ EA VF+ +
Sbjct: 41 ALLLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDS 97
Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
+ V + +M+ + A+ F +M + P F +L C L G+
Sbjct: 98 KLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEI 157
Query: 423 FKIMTEQYKLVPRIEHFAC--LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
++ K ++ FA L ++ + +V EA + +MP E + W ++VA
Sbjct: 158 HGLLV---KSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMP-ERDLVSWNTIVAG 210
>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720
OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
Length = 860
Score = 323 bits (828), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 173/542 (31%), Positives = 287/542 (52%), Gaps = 43/542 (7%)
Query: 48 KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
+++H ++ LH++P + L+ Y CG + + VF + +K + +N ++ +Y
Sbjct: 292 RQIHCDVV-KMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAE 350
Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
N Y AL ++ M PD +T V+ CS G +H + K +
Sbjct: 351 NDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTI 410
Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM--ESL 225
+ L+ +Y KCGC +A V M KD+V W S+++G +NG+F EAL V +M +
Sbjct: 411 ESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDD 470
Query: 226 RIKPDADTMASLLPSVTNTS------------------------------------PENV 249
+KPD+D M S+ + PE
Sbjct: 471 SLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMA 530
Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
L V F + +N+V+WN MI+ Y+ N++P ++DL+ M GI P+++S+ SVL A
Sbjct: 531 LKV---FTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAI 587
Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
++LL G+ +H Y R + + L+NAL+DMY KCG A +F +M+ + +++W
Sbjct: 588 SSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWN 647
Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
MI YG G A++LF +M +G PD + F+S++SAC+H+G +EEG+ F+ M +
Sbjct: 648 LMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQD 707
Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
Y + P +EH+A +VDLLGRAG +EEAY IK MP+E + IW L++A + N+++GIL
Sbjct: 708 YGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGIL 767
Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
+A+ + + P + YV L N+Y +AG + ++ M KG+ K PG S +E++D+
Sbjct: 768 SAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVSDRTN 827
Query: 549 II 550
+
Sbjct: 828 VF 829
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 126/426 (29%), Positives = 202/426 (47%), Gaps = 48/426 (11%)
Query: 99 NVLIRSYVNNYLYYDALHVY-KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
N IR+ + Y ALH+Y K+ F +T+P +LKACS +L G IH SVV
Sbjct: 28 NSGIRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTIHGSVV 87
Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND-------MPSKDVVTWNSMVAGYAQNG 210
+G Y+ F LV MY KCG L A +V + + ++DV WNSM+ GY +
Sbjct: 88 VLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFR 147
Query: 211 RFDEALDVCREMESLRIKPDA---------------------------------DTMASL 237
RF E + R M ++PDA DT + L
Sbjct: 148 RFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFL 207
Query: 238 LPSVTNTSPENVLSVK--EMFLKLDNK-NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG 294
++ + + LS+ +F+++++K N+V WNVMI + + + ++DLY+ + +
Sbjct: 208 KTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNS 267
Query: 295 IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354
++ + S L AC GR+IH V + L + + +L+ MY+KCG + EA
Sbjct: 268 VKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAE 327
Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
TVF + + + W +M++AY + GY A+ LF M + PDS +V+S CS G
Sbjct: 328 TVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLG 387
Query: 415 LLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
L G+ + ++ + IE + L+ L + G +AY + K M E + WGS
Sbjct: 388 LYNYGKSVHAELFKRPIQSTSTIE--SALLTLYSKCGCDPDAYLVFKSME-EKDMVAWGS 444
Query: 474 LVAACC 479
L++ C
Sbjct: 445 LISGLC 450
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 321 bits (822), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 167/452 (36%), Positives = 261/452 (57%), Gaps = 12/452 (2%)
Query: 94 NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGF-DPDCYTYPCVLKACSGSNSLLVGLQI 152
+ FN L+R Y + ++++ V+ M GF PD +++ V+KA SL G Q+
Sbjct: 69 DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 128
Query: 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
HC +K GL+ +LF G L+ MYG CGC++ AR+V ++M ++V WN+++ +
Sbjct: 129 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDV 188
Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIA 272
A ++ + + ++ L + E S K +F ++ +++ VSW+ MI
Sbjct: 189 AGAREI---FDKMLVRNHTSWNVMLAGYIKAGELE---SAKRIFSEMPHRDDVSWSTMIV 242
Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
A+N E+ + +++ G+ PN +S+ VL AC + G+ +H +VE+
Sbjct: 243 GIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSW 302
Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQM---RCQDVVSWTSMISAYGMSGQGYDAVALFS 389
+ + NAL+DMY++CG++ AR VF+ M RC +VSWTSMI+ M GQG +AV LF+
Sbjct: 303 IVSVNNALIDMYSRCGNVPMARLVFEGMQEKRC--IVSWTSMIAGLAMHGQGEEAVRLFN 360
Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
+M G+ PD I+F+S+L ACSHAGL+EEG YF M Y + P IEH+ C+VDL GR+
Sbjct: 361 EMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRS 420
Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509
GK+++AYD I QMP+ P +W +L+ AC + N+++ + L PN SG VLLS
Sbjct: 421 GKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLS 480
Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
N YA AG+W DV +RK M + IKK S+
Sbjct: 481 NAYATAGKWKDVASIRKSMIVQRIKKTTAWSL 512
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/407 (22%), Positives = 169/407 (41%), Gaps = 78/407 (19%)
Query: 38 LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
++ + ++T ++H Q + L S+ +G L+ YG CG + R VFDE+ N+V
Sbjct: 116 VENFRSLRTGFQMHCQAL-KHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVA 174
Query: 98 FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
+N +I + A ++ M V
Sbjct: 175 WNAVITACFRGNDVAGAREIFDKMLVR--------------------------------- 201
Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
N + N ++A Y K G L+ A+R+ ++MP +D V+W++M+ G A NG F+E+
Sbjct: 202 ------NHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFL 255
Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSP------------------------------- 246
RE++ + P+ ++ +L + + +
Sbjct: 256 YFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYS 315
Query: 247 --ENVLSVKEMFLKLDNKN-LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA 303
NV + +F + K +VSW MIA A + EAV L+ +M +G+ P+ IS
Sbjct: 316 RCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFI 375
Query: 304 SVLPACGDLSALLLGRKIHRYVER-KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
S+L AC + G ++R ++P + +VD+Y + G L +A QM
Sbjct: 376 SLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPI 435
Query: 363 -QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
+ W +++ A S G +A K ++ L P++ + +LS
Sbjct: 436 PPTAIVWRTLLGA--CSSHGNIELAEQVKQRLNELDPNNSGDLVLLS 480
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 156/336 (46%), Gaps = 20/336 (5%)
Query: 43 DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
D+ +++ ++++ H N ++ Y G++ + +F E+ +++ V ++ +I
Sbjct: 187 DVAGAREIFDKMLVRNHTSWNV-----MLAGYIKAGELESAKRIFSEMPHRDDVSWSTMI 241
Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
+N + ++ ++ + G P+ + VL ACS S S G +H V K G
Sbjct: 242 VGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYS 301
Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD-VVTWNSMVAGYAQNGRFDEALDVCRE 221
+ + N L+ MY +CG + AR V M K +V+W SM+AG A +G+ +EA+ + E
Sbjct: 302 WIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNE 361
Query: 222 MESLRIKPDADTMASLLPSVTNT----SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
M + + PD + SLL + ++ E+ S + ++ + + + M+ +Y +
Sbjct: 362 MTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPE-IEHYGCMVDLYGRS 420
Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
+A D QM I P AI ++L AC + L ++ + + +L PN +
Sbjct: 421 GKLQKAYDFICQMP---IPPTAIVWRTLLGACSSHGNIELAEQVKQRL--NELDPNNSGD 475
Query: 338 NALV-DMYAKCGSLTEARTVFDQM---RCQDVVSWT 369
L+ + YA G + ++ M R + +W+
Sbjct: 476 LVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWS 511
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 320 bits (820), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 181/510 (35%), Positives = 283/510 (55%), Gaps = 36/510 (7%)
Query: 70 LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
++ Y G + D R VFD + KN V +N L+ +YV N +A ++K+
Sbjct: 163 MLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL--- 219
Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSV-VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
++ C+L ++ Q S+ V+ ++ + N ++ Y + G + EAR++
Sbjct: 220 -VSWNCLLGGFVKKKKIVEARQFFDSMNVR-----DVVSWNTIITGYAQSGKIDEARQLF 273
Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR-----------IKPDADTMASL 237
++ P +DV TW +MV+GY QN +EA ++ +M ++ + MA
Sbjct: 274 DESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKE 333
Query: 238 LPSV---TNTSPENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
L V N S N + K +F K+ ++ VSW MIA Y+ + EA
Sbjct: 334 LFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEA 393
Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
+ L++QME G N S +S L C D+ AL LG+++H + + + + NAL+ M
Sbjct: 394 LRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLM 453
Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
Y KCGS+ EA +F +M +D+VSW +MI+ Y G G A+ F M GL PD
Sbjct: 454 YCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATM 513
Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
V+VLSACSH GL+++GR YF MT+ Y ++P +H+AC+VDLLGRAG +E+A++L+K MP
Sbjct: 514 VAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMP 573
Query: 464 MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKR 523
EP+ IWG+L+ A ++ N ++ AAD IF + P SG YVLLSN+YA +GRWGDV +
Sbjct: 574 FEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGK 633
Query: 524 VRKFMNSKGIKKMPGAS-VEMNDQVQIIAL 552
+R M KG+KK+PG S +E+ ++ ++
Sbjct: 634 LRVRMRDKGVKKVPGYSWIEIQNKTHTFSV 663
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 111/446 (24%), Positives = 199/446 (44%), Gaps = 93/446 (20%)
Query: 78 GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137
G+ R +FDE+ +++V +NV+I+ YV N A +++ M P+
Sbjct: 109 GEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIM------PE-------R 155
Query: 138 KACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV 197
CS N++L G Y + GC+ +AR V + MP K+ V
Sbjct: 156 DVCSW-NTMLSG-------------------------YAQNGCVDDARSVFDRMPEKNDV 189
Query: 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL 257
+WN++++ Y QN + +EA + + E+ + + LL + ++ ++ F
Sbjct: 190 SWNALLSAYVQNSKMEEACMLFKSRENWALV----SWNCLLGGF--VKKKKIVEARQFFD 243
Query: 258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI---------------EPNAISV 302
++ +++VSWN +I YA + EA L+ + V + A +
Sbjct: 244 SMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEAREL 303
Query: 303 ASVLPACGDLS--ALLLGRKIHRYVERKKLQ-----------PNLRLENALVDMYAKCGS 349
+P ++S A+L G YV+ ++++ N+ N ++ YA+CG
Sbjct: 304 FDKMPERNEVSWNAMLAG-----YVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGK 358
Query: 350 LTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
++EA+ +FD+M +D VSW +MI+ Y SG ++A+ LF +M G + +F S LS
Sbjct: 359 ISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALST 418
Query: 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD-----LLGRAGKVEEAYDLIKQMPM 464
C+ LE G+ +LV C V + + G +EEA DL K+M
Sbjct: 419 CADVVALELGKQL------HGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAG 472
Query: 465 EPNERIWGSLVAACCLYSNMDIGILA 490
+ + W +++A YS G +A
Sbjct: 473 K-DIVSWNTMIAG---YSRHGFGEVA 494
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 153/345 (44%), Gaps = 51/345 (14%)
Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
D ++ N ++ Y + G EA RV MP V++N M++GY +NG F+ A + E
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120
Query: 222 MESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
M P+ D ++ + N+ +E+F + +++ SWN M++ YA N
Sbjct: 121 M------PERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVD 174
Query: 282 EAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL--EN 338
+A ++ +M E + + NA+ LSA + K+ K + N L N
Sbjct: 175 DARSVFDRMPEKNDVSWNAL-----------LSAYVQNSKMEEACMLFKSRENWALVSWN 223
Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
L+ + K + EAR FD M +DVVSW ++I+ Y SG+ +A LF + +
Sbjct: 224 CLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ---- 279
Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ-----------YKLVPRIEHFACLVDLL- 446
D + +++S ++EE R F M E+ Y R+E L D++
Sbjct: 280 DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMP 339
Query: 447 --------------GRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
+ GK+ EA +L +MP + + W +++A
Sbjct: 340 CRNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 383
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 175/519 (33%), Positives = 294/519 (56%), Gaps = 43/519 (8%)
Query: 68 LKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFD 127
+ L Y A G + R +FDE+ +++ +N +I Y + +AL + +
Sbjct: 192 IHLYSRYKAVG---NARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRA---- 244
Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
D T +L AC+ + G+ IH +K GL+ LF N L+ +Y + G L++ ++V
Sbjct: 245 MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKV 304
Query: 188 LNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASL---------- 237
+ M +D+++WNS++ Y N + A+ + +EM RI+PD T+ SL
Sbjct: 305 FDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDI 364
Query: 238 ----------------LPSVTNTSPENVL--------SVKEMFLKLDNKNLVSWNVMIAV 273
L +T + V+ S + +F L N +++SWN +I+
Sbjct: 365 RACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISG 424
Query: 274 YANNSMPAEAVDLYLQMEVHG-IEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
YA N +EA+++Y ME G I N + SVLPAC AL G K+H + + L
Sbjct: 425 YAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYL 484
Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
++ + +L DMY KCG L +A ++F Q+ + V W ++I+ +G G G AV LF +ML
Sbjct: 485 DVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEML 544
Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
G+ PD I FV++LSACSH+GL++EG++ F++M Y + P ++H+ C+VD+ GRAG++
Sbjct: 545 DEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQL 604
Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
E A IK M ++P+ IWG+L++AC ++ N+D+G +A++H+F + P GY+VLLSN+Y
Sbjct: 605 ETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMY 664
Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQII 550
A AG+W V +R + KG++K PG +S+E++++V++
Sbjct: 665 ASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVF 703
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 140/510 (27%), Positives = 253/510 (49%), Gaps = 58/510 (11%)
Query: 43 DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
++++ K LHA++++++ + N I KL+ Y G + RH FD I N++V +N++I
Sbjct: 66 NLQSAKCLHARLVVSKQIQ-NVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMI 124
Query: 103 RSYVNNYLYYDALHVYK-NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL 161
Y + + + M G PD T+P VLKAC +++ G +IHC +K G
Sbjct: 125 SGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC---RTVIDGNKIHCLALKFGF 181
Query: 162 DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221
++++ L+ +Y + + AR + ++MP +D+ +WN+M++GY Q+G EAL +
Sbjct: 182 MWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNG 241
Query: 222 MESLRIKPDADTMASLLPSVTNTSPEN--------------------------------- 248
+ ++ D+ T+ SLL + T N
Sbjct: 242 LRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGR 297
Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA---ISVASV 305
+ +++F ++ ++L+SWN +I Y N P A+ L+ +M + I+P+ IS+AS+
Sbjct: 298 LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASI 357
Query: 306 LPACGDLSALLLGRKIHRYVERKK-LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
L GD+ A R + + RK ++ + NA+V MYAK G + AR VF+ + D
Sbjct: 358 LSQLGDIRAC---RSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTD 414
Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSG-LCPDSIAFVSVLSACSHAGLLEEGRYYF 423
V+SW ++IS Y +G +A+ +++ M G + + +VSVL ACS AG L +G
Sbjct: 415 VISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQG---M 471
Query: 424 KIMTEQYKLVPRIEHF--ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
K+ K ++ F L D+ G+ G++E+A L Q+P N W +L+A +
Sbjct: 472 KLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFH 530
Query: 482 SNMDIGILAADHIFH--LAPNQSGYYVLLS 509
+ + ++ + + P+ + LLS
Sbjct: 531 GHGEKAVMLFKEMLDEGVKPDHITFVTLLS 560
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/386 (23%), Positives = 174/386 (45%), Gaps = 30/386 (7%)
Query: 37 ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
IL + DI+ + + + + +IG ++ Y G + R VF+ + N +V+
Sbjct: 357 ILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVI 416
Query: 97 FFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
+N +I Y N +A+ +Y M G + T+ VL ACS + +L G+++H
Sbjct: 417 SWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGR 476
Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
++K GL ++F L MYGKCG L++A + +P + V WN+++A + +G ++A
Sbjct: 477 LLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKA 536
Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD---NKNLVSWNVMIA 272
+ + +EM +KPD T +LL + +++ + ++ D +L + M+
Sbjct: 537 VMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVD 596
Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY---VERKK 329
+Y A+ M ++P+A ++L AC + LG+ + VE +
Sbjct: 597 MYGRAGQLETALKFIKSMS---LQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEH 653
Query: 330 LQPNLRLENALVDMYAKCG---SLTEARTVFDQMRCQDVVSWTSM-----ISAYGMSGQG 381
+ ++ L N MYA G + E R++ + W+SM + + Q
Sbjct: 654 VGYHVLLSN----MYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQT 709
Query: 382 Y--------DAVALFSKMLMSGLCPD 399
+ + AL +K+ M G PD
Sbjct: 710 HPMYEEMYRELTALQAKLKMIGYVPD 735
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 319 bits (818), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 172/512 (33%), Positives = 290/512 (56%), Gaps = 46/512 (8%)
Query: 43 DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK---NVVFFN 99
++KTLK+ H +II N L + + AC R+ + T++ N N
Sbjct: 27 NLKTLKQSHCYMIITGLNRDN----LNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHN 82
Query: 100 VLIRSYV---NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
+IR+ + A+ VY+ + PD +T+P VLK + + G QIH V
Sbjct: 83 TMIRALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQV 142
Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
V G D ++ GL+ MY CG L +AR++ ++M KDV WN+++AGY + G DEA
Sbjct: 143 VVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEA- 201
Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
++ ++P +N VSW +I+ YA
Sbjct: 202 ---------------RSLLEMMPCWV-------------------RNEVSWTCVISGYAK 227
Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
+ +EA++++ +M + +EP+ +++ +VL AC DL +L LG +I YV+ + + + L
Sbjct: 228 SGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSL 287
Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
NA++DMYAK G++T+A VF+ + ++VV+WT++I+ G G +A+A+F++M+ +G+
Sbjct: 288 NNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGV 347
Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
P+ + F+++LSACSH G ++ G+ F M +Y + P IEH+ C++DLLGRAGK+ EA
Sbjct: 348 RPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREAD 407
Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
++IK MP + N IWGSL+AA ++ ++++G A + L PN SG Y+LL+N+Y+ G
Sbjct: 408 EVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLG 467
Query: 517 RWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
RW + + +R M G+KKM G +S+E+ ++V
Sbjct: 468 RWDESRMMRNMMKGIGVKKMAGESSIEVENRV 499
>sp|Q9LUC2|PP231_ARATH Pentatricopeptide repeat-containing protein At3g14730
OS=Arabidopsis thaliana GN=PCMP-E31 PE=2 SV=1
Length = 653
Score = 319 bits (817), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 182/538 (33%), Positives = 293/538 (54%), Gaps = 44/538 (8%)
Query: 43 DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
D + +++H ++ L +P G L+ Y CG M VF + ++V +N LI
Sbjct: 75 DYVSGQQIHGFMVRKGFLDDSPRAGTSLVNMYAKCGLMRRAVLVFGG-SERDVFGYNALI 133
Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG--LQIHCSVVKVG 160
+V N DA+ Y+ M +G PD YT+P +LK GS+++ + ++H K+G
Sbjct: 134 SGFVVNGSPLDAMETYREMRANGILPDKYTFPSLLK---GSDAMELSDVKKVHGLAFKLG 190
Query: 161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD-VVTWNSMVAGYAQNGRFDEALDVC 219
D + + G+GLV Y K +++A++V +++P +D V WN++V GY+Q RF++AL V
Sbjct: 191 FDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQIFRFEDALLVF 250
Query: 220 REMESLRIKPDADTMASLLPSVT------NTSPENVLSVK-------------------- 253
+M + T+ S+L + T N + L+VK
Sbjct: 251 SKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAVKTGSGSDIVVSNALIDMYGKS 310
Query: 254 -------EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVL 306
+F +D ++L +WN ++ V+ + L+ +M GI P+ +++ +VL
Sbjct: 311 KWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFERMLCSGIRPDIVTLTTVL 370
Query: 307 PACGDLSALLLGRKIHRYVERKKL----QPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
P CG L++L GR+IH Y+ L N + N+L+DMY KCG L +AR VFD MR
Sbjct: 371 PTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSMRV 430
Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
+D SW MI+ YG+ G A+ +FS M +G+ PD I FV +L ACSH+G L EGR +
Sbjct: 431 KDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHSGFLNEGRNF 490
Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
M Y ++P +H+AC++D+LGRA K+EEAY+L P+ N +W S++++C L+
Sbjct: 491 LAQMETVYNILPTSDHYACVIDMLGRADKLEEAYELAISKPICDNPVVWRSILSSCRLHG 550
Query: 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
N D+ ++A + L P G YVL+SN+Y +AG++ +V VR M + +KK PG S
Sbjct: 551 NKDLALVAGKRLHELEPEHCGGYVLMSNVYVEAGKYEEVLDVRDAMRQQNVKKTPGCS 608
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 318 bits (814), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 176/525 (33%), Positives = 292/525 (55%), Gaps = 19/525 (3%)
Query: 43 DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGAC----GQMVDTRHVFDEITNKNVVFF 98
+I+TLK++HA +++N L SN S+ +L+ Y A G + +FDEI +V
Sbjct: 24 NIRTLKQIHASMVVNG-LMSNLSVVGELI--YSASLSVPGALKYAHKLFDEIPKPDVSIC 80
Query: 99 NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
N ++R + + +Y M G PD YT+ VLKACS G H VV+
Sbjct: 81 NHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVR 140
Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
G N + N L+ + CG L A + +D V W+SM +GYA+ G+ DEA+ +
Sbjct: 141 HGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRL 200
Query: 219 CREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNS 278
EM P D +A + + + S +E+F + K++V+WN MI+ Y N
Sbjct: 201 FDEM------PYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCG 254
Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV-ERKKLQPNLR-- 335
P EA+ ++ +M G P+ +++ S+L AC L L G+++H Y+ E + ++
Sbjct: 255 YPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVG 314
Query: 336 --LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
+ NAL+DMYAKCGS+ A VF ++ +D+ +W ++I + ++ +F +M
Sbjct: 315 TPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQR 373
Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
+ P+ + F+ V+ ACSH+G ++EGR YF +M + Y + P I+H+ C+VD+LGRAG++E
Sbjct: 374 LKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLE 433
Query: 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513
EA+ ++ M +EPN +W +L+ AC +Y N+++G A + + + ++SG YVLLSNIYA
Sbjct: 434 EAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYA 493
Query: 514 KAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQIIALPLRSSK 558
G+W V++VRK + +KK G S+ D +++ L SS+
Sbjct: 494 STGQWDGVQKVRKMFDDTRVKKPTGVSLIEEDDDKLMMRYLLSSE 538
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 318 bits (814), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 179/517 (34%), Positives = 277/517 (53%), Gaps = 35/517 (6%)
Query: 66 IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
+ L+ Y ++ VFDE+ ++V +N +I + + AL ++ M G
Sbjct: 144 VASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSG 203
Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
F+P+ + + ACS L G +IH VK G + + + + LV MYGKC CL+ AR
Sbjct: 204 FEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAR 263
Query: 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL------- 238
V MP K +V WNSM+ GY G +++ M +P T+ S+L
Sbjct: 264 EVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSR 323
Query: 239 -------------PSVTNTSPENVLSVKEMFLKLDNKNLV-------------SWNVMIA 272
SV N S+ +++ K NL SWNVMI+
Sbjct: 324 NLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMIS 383
Query: 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
Y + +AV++Y QM G++P+ ++ SVLPAC L+AL G++IH + +L+
Sbjct: 384 SYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLET 443
Query: 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
+ L +AL+DMY+KCG+ EA +F+ + +DVVSWT MISAYG GQ +A+ F +M
Sbjct: 444 DELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQ 503
Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
GL PD + ++VLSAC HAGL++EG +F M +Y + P IEH++C++D+LGRAG++
Sbjct: 504 KFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRL 563
Query: 453 EEAYDLIKQMP-MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
EAY++I+Q P N + +L +ACCL+ +G A + P+ + Y++L N+
Sbjct: 564 LEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPDDASTYMVLFNL 623
Query: 512 YAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
YA W +RVR M G++K PG S +EM+D+V
Sbjct: 624 YASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKV 660
Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 124/450 (27%), Positives = 218/450 (48%), Gaps = 36/450 (8%)
Query: 49 KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI-TNKNVVFFNVLIRSYVN 107
KL Q I+ L + + L+ Y C RHVF+ +V +N L+ Y
Sbjct: 24 KLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSK 83
Query: 108 NYLYYDALHVYKNM-SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
N +++D L V+K + + PD +T+P V+KA +G IH VVK G ++
Sbjct: 84 NSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVV 143
Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226
+ LV MY K + + +V ++MP +DV +WN++++ + Q+G ++AL++ MES
Sbjct: 144 VASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSG 203
Query: 227 IKPDADTMASLLPSVT--------------------------NTSPENVLS-------VK 253
+P++ ++ + + + N++ ++ +
Sbjct: 204 FEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAR 263
Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
E+F K+ K+LV+WN MI Y V++ +M + G P+ ++ S+L AC
Sbjct: 264 EVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSR 323
Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
LL G+ IH YV R + ++ + +L+D+Y KCG A TVF + + SW MIS
Sbjct: 324 NLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMIS 383
Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
+Y G + AV ++ +M+ G+ PD + F SVL ACS LE+G+ ++E +L
Sbjct: 384 SYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISES-RLE 442
Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
+ L+D+ + G +EA+ + +P
Sbjct: 443 TDELLLSALLDMYSKCGNEKEAFRIFNSIP 472
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 102/195 (52%), Gaps = 4/195 (2%)
Query: 50 LHAQII----INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105
LH + I I ++++ + L+ Y CG+ VF + +NV+I SY
Sbjct: 326 LHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSY 385
Query: 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL 165
++ ++ A+ VY M G PD T+ VL ACS +L G QIH S+ + L+ +
Sbjct: 386 ISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDE 445
Query: 166 FNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
+ L+ MY KCG KEA R+ N +P KDVV+W M++ Y +G+ EAL EM+
Sbjct: 446 LLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKF 505
Query: 226 RIKPDADTMASLLPS 240
+KPD T+ ++L +
Sbjct: 506 GLKPDGVTLLAVLSA 520
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 124/228 (54%), Gaps = 6/228 (2%)
Query: 251 SVKEMFLKLDNKNLVS-WNVMIAVYANNSMPAEAVDLYLQMEVHGI-EPNAISVASVLPA 308
S + +F D ++ V WN +++ Y+ NSM + ++++ ++ I P++ + +V+ A
Sbjct: 57 SARHVFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKA 116
Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSW 368
G L LGR IH V + ++ + ++LV MYAK + VFD+M +DV SW
Sbjct: 117 YGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASW 176
Query: 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMT 427
++IS + SG+ A+ LF +M SG P+S++ +SACS LE G+ + K +
Sbjct: 177 NTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVK 236
Query: 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
+ ++L + + LVD+ G+ +E A ++ ++MP + W S++
Sbjct: 237 KGFELDEYVN--SALVDMYGKCDCLEVAREVFQKMP-RKSLVAWNSMI 281
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 6/165 (3%)
Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMISAYGMSG 379
+H+ + L+ ++ L +L+++Y C AR VF+ + DV W S++S Y +
Sbjct: 26 VHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSKNS 85
Query: 380 QGYDAVALFSKMLMSGLC-PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438
+D + +F ++L +C PDS F +V+ A G GR ++ + V +
Sbjct: 86 MFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKS-GYVCDVVV 144
Query: 439 FACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
+ LV + + E + + +MP E + W ++++ C Y +
Sbjct: 145 ASSLVGMYAKFNLFENSLQVFDEMP-ERDVASWNTVIS--CFYQS 186
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 317 bits (813), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 176/506 (34%), Positives = 280/506 (55%), Gaps = 68/506 (13%)
Query: 70 LMRTYGACGQMVDTRHVFDEITNK-----------------------------------N 94
+ Y CG+M D R VFD +++K N
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEAN 216
Query: 95 VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
+V +N ++ + + + +A+ +++ + GF PD T VL + S L +G IH
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHG 276
Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
V+K GL + + ++ MYGK G + + N + N+ + G ++NG D+
Sbjct: 277 YVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDK 336
Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
AL EM L KE ++L N+VSW +IA
Sbjct: 337 AL----EMFEL--------------------------FKEQTMEL---NVVSWTSIIAGC 363
Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
A N EA++L+ +M+V G++PN +++ S+LPACG+++AL GR H + R L N+
Sbjct: 364 AQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNV 423
Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394
+ +AL+DMYAKCG + ++ VF+ M +++V W S+++ + M G+ + +++F ++ +
Sbjct: 424 HVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRT 483
Query: 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454
L PD I+F S+LSAC GL +EG YFK+M+E+Y + PR+EH++C+V+LLGRAGK++E
Sbjct: 484 RLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQE 543
Query: 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514
AYDLIK+MP EP+ +WG+L+ +C L +N+D+ +AA+ +FHL P G YVLLSNIYA
Sbjct: 544 AYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAA 603
Query: 515 AGRWGDVKRVRKFMNSKGIKKMPGAS 540
G W +V +R M S G+KK PG S
Sbjct: 604 KGMWTEVDSIRNKMESLGLKKNPGCS 629
Score = 169 bits (427), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 119/460 (25%), Positives = 209/460 (45%), Gaps = 71/460 (15%)
Query: 51 HAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYL 110
HA+I+ ++ I KL+ +Y D V I + + F+ LI + L
Sbjct: 38 HARIL-KSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKL 96
Query: 111 YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG 170
+ ++ V+ M HG PD + P + K C+ ++ VG QIHC GLD + F
Sbjct: 97 FTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGS 156
Query: 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230
+ MY +CG + +AR+V + M KDVVT ++++ YA+ G +E + + EMES I+
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA- 215
Query: 231 ADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
N+VSWN +++ + + EAV ++ ++
Sbjct: 216 --------------------------------NIVSWNGILSGFNRSGYHKEAVVMFQKI 243
Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
G P+ ++V+SVLP+ GD L +GR IH YV ++ L + + +A++DMY K G +
Sbjct: 244 HHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHV 303
Query: 351 TEARTVFDQMRCQD-----------------------------------VVSWTSMISAY 375
++F+Q + VVSWTS+I+
Sbjct: 304 YGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGC 363
Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
+G+ +A+ LF +M ++G+ P+ + S+L AC + L GR + L+
Sbjct: 364 AQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVH-LLDN 422
Query: 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475
+ + L+D+ + G++ + + MP + N W SL+
Sbjct: 423 VHVGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLM 461
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 114/277 (41%), Gaps = 50/277 (18%)
Query: 59 HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVY 118
HL N +G L+ Y CG++ ++ VF+ + KN+V +N L+ + + + + ++
Sbjct: 418 HLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIF 477
Query: 119 KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ-IHCSVVKVGLDYNLFNGNGLVAMYGK 177
+++ PD ++ +L AC G + + G+ L + + +V + G+
Sbjct: 478 ESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGR 537
Query: 178 CGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMAS 236
G L+EA ++ +MP + D W ++ L+ CR L+ D +A+
Sbjct: 538 AGKLQEAYDLIKEMPFEPDSCVWGAL-------------LNSCR----LQNNVDLAEIAA 580
Query: 237 LLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE 296
E L+ +N ++ ++ +YA M E + +ME G++
Sbjct: 581 -----------------EKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLK 623
Query: 297 PNAISVASVLPACGDLS------ALLLGRKIHRYVER 327
N P C + LL G K H +++
Sbjct: 624 KN--------PGCSWIQVKNRVYTLLAGDKSHPQIDQ 652
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 317 bits (812), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 175/509 (34%), Positives = 288/509 (56%), Gaps = 44/509 (8%)
Query: 86 VFDEITNKNVVF-FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
+F+ +K VF +N +I + +AL + +M P ++PC +KACS
Sbjct: 31 LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90
Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
+ G Q H G ++F + L+ MY CG L++AR+V +++P +++V+W SM+
Sbjct: 91 DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150
Query: 205 GYAQNGRFDEALDVCREM-------------------------------------ESLRI 227
GY NG +A+ + +++ S I
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVI 210
Query: 228 KPDADTMAS----LLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
K D S LL + V +++F ++ +K+ VS+N +++VYA + M EA
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEA 270
Query: 284 VDLYLQMEVHGIEP-NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
+++ ++ + + NAI++++VL A AL +G+ IH V R L+ ++ + +++D
Sbjct: 271 FEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIID 330
Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
MY KCG + AR FD+M+ ++V SWT+MI+ YGM G A+ LF M+ SG+ P+ I
Sbjct: 331 MYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYIT 390
Query: 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
FVSVL+ACSHAGL EG +F M ++ + P +EH+ C+VDLLGRAG +++AYDLI++M
Sbjct: 391 FVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRM 450
Query: 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522
M+P+ IW SL+AAC ++ N+++ ++ +F L + GYY+LLS+IYA AGRW DV+
Sbjct: 451 KMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVE 510
Query: 523 RVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
RVR M ++G+ K PG S +E+N +V +
Sbjct: 511 RVRMIMKNRGLVKPPGFSLLELNGEVHVF 539
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/386 (27%), Positives = 187/386 (48%), Gaps = 49/386 (12%)
Query: 33 ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
AC+ + D I + K+ H Q + + S+ + L+ Y CG++ D R VFDEI
Sbjct: 85 ACSSLFD----IFSGKQTHQQAFVFGY-QSDIFVSSALIVMYSTCGKLEDARKVFDEIPK 139
Query: 93 KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY------PCVLKACSGSNSL 146
+N+V + +IR Y N DA+ ++K++ V D D + V+ ACS +
Sbjct: 140 RNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAK 199
Query: 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC--GCLKEARRVLNDMPSKDVVTWNSMVA 204
+ IH V+K G D + GN L+ Y K G + AR++ + + KD V++NS+++
Sbjct: 200 GLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMS 259
Query: 205 GYAQNGRFDEALDVCREMESLRIKP-DADTMASLLPSVTNTSP----------------- 246
YAQ+G +EA +V R + ++ +A T++++L +V+++
Sbjct: 260 VYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLE 319
Query: 247 ----------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
V + ++ F ++ NKN+ SW MIA Y + A+A++L+ M
Sbjct: 320 DDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAM 379
Query: 291 EVHGIEPNAISVASVLPACGDLSALLLG-RKIHRYVERKKLQPNLRLENALVDMYAKCGS 349
G+ PN I+ SVL AC + G R + R ++P L +VD+ + G
Sbjct: 380 IDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGF 439
Query: 350 LTEARTVFDQMRCQ-DVVSWTSMISA 374
L +A + +M+ + D + W+S+++A
Sbjct: 440 LQKAYDLIQRMKMKPDSIIWSSLLAA 465
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 105/194 (54%), Gaps = 11/194 (5%)
Query: 233 TMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
+++ LL + +T +N+ ++ ++ D ++ SWN +IA A + AEA+ + M
Sbjct: 12 SVSRLLHTERHTERQNLTTLFNRYV--DKTDVFSWNSVIADLARSGDSAEALLAFSSMRK 69
Query: 293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
+ P S + AC L + G++ H+ Q ++ + +AL+ MY+ CG L +
Sbjct: 70 LSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLED 129
Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM------SGLCPDSIAFVSV 406
AR VFD++ +++VSWTSMI Y ++G DAV+LF +L+ + DS+ VSV
Sbjct: 130 ARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSV 189
Query: 407 LSACSHA---GLLE 417
+SACS GL E
Sbjct: 190 ISACSRVPAKGLTE 203
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 144/295 (48%), Gaps = 24/295 (8%)
Query: 40 KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTY--GACGQMVDTRHVFDEITNKNVVF 97
+ P + +H+ +I + S+G L+ Y G G + R +FD+I +K+ V
Sbjct: 195 RVPAKGLTESIHS-FVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS 253
Query: 98 FNVLIRSYVNNYLYYDALHVYKNM---SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
+N ++ Y + + +A V++ + V F+ T VL A S S +L +G IH
Sbjct: 254 YNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNA--ITLSTVLLAVSHSGALRIGKCIHD 311
Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
V+++GL+ ++ G ++ MY KCG ++ AR+ + M +K+V +W +M+AGY +G +
Sbjct: 312 QVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAK 371
Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTS--PENVLSVKEMFLKLD-NKNLVSWNVMI 271
AL++ M ++P+ T S+L + ++ E M + L + M+
Sbjct: 372 ALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMV 431
Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326
+ +A DL +M+ ++P++I +S+L AC +IH+ VE
Sbjct: 432 DLLGRAGFLQKAYDLIQRMK---MKPDSIIWSSLLAAC----------RIHKNVE 473
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 317 bits (812), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 170/497 (34%), Positives = 283/497 (56%), Gaps = 46/497 (9%)
Query: 49 KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
KL +++ H+H N SI + + +CG M + R VFDE +++V +N LI Y
Sbjct: 184 KLRLELV--SHVH-NASIHM-----FASCGDMENARKVFDESPVRDLVSWNCLINGYKKI 235
Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
A++VYK M G PD T ++ +CS L G + + V + GL +
Sbjct: 236 GEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLV 295
Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
N L+ M+ KCG + EARR+ +++ + +V+W +M++GYA+ G LDV R++
Sbjct: 296 NALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCG----LLDVSRKL------ 345
Query: 229 PDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288
F ++ K++V WN MI +A+ L+
Sbjct: 346 ---------------------------FDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQ 378
Query: 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348
+M+ +P+ I++ L AC L AL +G IHRY+E+ L N+ L +LVDMYAKCG
Sbjct: 379 EMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCG 438
Query: 349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
+++EA +VF ++ ++ +++T++I + G A++ F++M+ +G+ PD I F+ +LS
Sbjct: 439 NISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLS 498
Query: 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE 468
AC H G+++ GR YF M ++ L P+++H++ +VDLLGRAG +EEA L++ MPME +
Sbjct: 499 ACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADA 558
Query: 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528
+WG+L+ C ++ N+++G AA + L P+ SG YVLL +Y +A W D KR R+ M
Sbjct: 559 AVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMM 618
Query: 529 NSKGIKKMPG-ASVEMN 544
N +G++K+PG +S+E+N
Sbjct: 619 NERGVEKIPGCSSIEVN 635
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 103/200 (51%), Gaps = 4/200 (2%)
Query: 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI---EPNAISVASVLPACGDLSAL 315
++N N+ SWNV I ++ + P E+ LY QM HG P+ + + C DL
Sbjct: 113 IENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLS 172
Query: 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
LG I +V + +L+ + NA + M+A CG + AR VFD+ +D+VSW +I+ Y
Sbjct: 173 SLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGY 232
Query: 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435
G+ A+ ++ M G+ PD + + ++S+CS G L G+ +++ + E L
Sbjct: 233 KKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKEN-GLRMT 291
Query: 436 IEHFACLVDLLGRAGKVEEA 455
I L+D+ + G + EA
Sbjct: 292 IPLVNALMDMFSKCGDIHEA 311
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 316 bits (810), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 185/582 (31%), Positives = 310/582 (53%), Gaps = 48/582 (8%)
Query: 7 LCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSI 66
+CR S T P T TLL G CND + + + ++HA + +NP +
Sbjct: 136 MCRSSSCTLPDHV----TFTTLLPG--CNDAVPQ----NAVGQVHA-FAVKLGFDTNPFL 184
Query: 67 GLK--LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
+ L+++Y ++ +F+EI K+ V FN LI Y + LY +++H++ M
Sbjct: 185 TVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQS 244
Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
G P +T+ VLKA G + +G Q+H V G + GN ++ Y K + E
Sbjct: 245 GHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLET 304
Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
R + ++MP D V++N +++ Y+Q +++ +L REM+ + A++L N
Sbjct: 305 RMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANL 364
Query: 245 S----------------PENVLSVK----------EMFLK-------LDNKNLVSWNVMI 271
S +++L V EMF + L + VSW +I
Sbjct: 365 SSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALI 424
Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
+ Y + + L+ +M + + + A+VL A ++LLLG+++H ++ R
Sbjct: 425 SGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNL 484
Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
N+ + LVDMYAKCGS+ +A VF++M ++ VSW ++ISA+ +G G A+ F+KM
Sbjct: 485 ENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKM 544
Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
+ SGL PDS++ + VL+ACSH G +E+G YF+ M+ Y + P+ +H+AC++DLLGR G+
Sbjct: 545 IESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGR 604
Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP-NQSGYYVLLSN 510
EA L+ +MP EP+E +W S++ AC ++ N + AA+ +F + + YV +SN
Sbjct: 605 FAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSN 664
Query: 511 IYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIA 551
IYA AG W V+ V+K M +GIKK+P S VE+N ++ + +
Sbjct: 665 IYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFS 706
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/504 (23%), Positives = 224/504 (44%), Gaps = 42/504 (8%)
Query: 11 FSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKL 70
F T+ V A ++ T + D C ++ + A+ + ++ H N +
Sbjct: 29 FLDTRRVDARIIKTGF---DTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTM 85
Query: 71 MRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM--SVHGFDP 128
+ + G + R +FD + ++ VV + +L+ Y N + +A +++ M S P
Sbjct: 86 ISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLP 145
Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF--NGNGLVAMYGKCGCLKEARR 186
D T+ +L C+ + Q+H VK+G D N F N L+ Y + L A
Sbjct: 146 DHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACV 205
Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN--- 243
+ ++P KD VT+N+++ GY ++G + E++ + +M +P T + +L +V
Sbjct: 206 LFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHD 265
Query: 244 ------------------------------TSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273
+ + VL + +F ++ + VS+NV+I+
Sbjct: 266 FALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISS 325
Query: 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
Y+ ++ + +M+ G + A++L +LS+L +GR++H
Sbjct: 326 YSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSI 385
Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
L + N+LVDMYAKC EA +F + + VSWT++IS Y G + LF+KM
Sbjct: 386 LHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRG 445
Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453
S L D F +VL A + L G+ + L + + LVD+ + G ++
Sbjct: 446 SNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNL-ENVFSGSGLVDMYAKCGSIK 504
Query: 454 EAYDLIKQMPMEPNERIWGSLVAA 477
+A + ++MP + N W +L++A
Sbjct: 505 DAVQVFEEMP-DRNAVSWNALISA 527
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
+ L ++ ++K G D + N +V + G + AR+V ++MP K+ V+ N+M++
Sbjct: 28 TFLDTRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMIS 87
Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL 264
G+ + G +V S +++F + ++ +
Sbjct: 88 GHVKTG-------------------------------------DVSSARDLFDAMPDRTV 110
Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQM--EVHGIEPNAISVASVLPACGDLSALLLGRKIH 322
V+W +++ YA NS EA L+ QM P+ ++ ++LP C D ++H
Sbjct: 111 VTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVH 170
Query: 323 RYVERKKLQPN--LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQ 380
+ + N L + N L+ Y + L A +F+++ +D V++ ++I+ Y G
Sbjct: 171 AFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGL 230
Query: 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSA 409
+++ LF KM SG P F VL A
Sbjct: 231 YTESIHLFLKMRQSGHQPSDFTFSGVLKA 259
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 315 bits (807), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 181/502 (36%), Positives = 274/502 (54%), Gaps = 39/502 (7%)
Query: 40 KYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
K D++T +K++A I N + N + L+ Y C + + +FDE N+ N
Sbjct: 248 KLEDLETGEKVYA-FIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCN 306
Query: 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
+ +YV L +AL V+ M G PD + + +CS ++L G H V++
Sbjct: 307 AMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRN 366
Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
G + N L+ MY KC A R+ + M +K VVTWNS+VAGY +NG D A
Sbjct: 367 GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAW--- 423
Query: 220 REMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSM 279
E F + KN+VSWN +I+ S+
Sbjct: 424 ----------------------------------ETFETMPEKNIVSWNTIISGLVQGSL 449
Query: 280 PAEAVDLYLQMEVH-GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
EA++++ M+ G+ + +++ S+ ACG L AL L + I+ Y+E+ +Q ++RL
Sbjct: 450 FEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGT 509
Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
LVDM+++CG A ++F+ + +DV +WT+ I A M+G A+ LF M+ GL P
Sbjct: 510 TLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKP 569
Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
D +AFV L+ACSH GL+++G+ F M + + + P H+ C+VDLLGRAG +EEA L
Sbjct: 570 DGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQL 629
Query: 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
I+ MPMEPN+ IW SL+AAC + N+++ AA+ I LAP ++G YVLLSN+YA AGRW
Sbjct: 630 IEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRW 689
Query: 519 GDVKRVRKFMNSKGIKKMPGAS 540
D+ +VR M KG++K PG S
Sbjct: 690 NDMAKVRLSMKEKGLRKPPGTS 711
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 142/521 (27%), Positives = 231/521 (44%), Gaps = 78/521 (14%)
Query: 17 VQALVLSTQYTLLSGDACNDI----LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMR 72
V A +T+ +LL+ C L I LK H + + Q L ++ S KL+
Sbjct: 14 VLATTTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFH-RSLTKQGLDNDVSTITKLVA 72
Query: 73 ---TYGACGQMVDTRHVFDEITNKNVVF-FNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
G + + VF+ + F +N LIR Y ++ L +A+ ++ M G P
Sbjct: 73 RSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISP 132
Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
D YT+P L AC+ S + G+QIH +VK+G +LF N LV Y +CG L AR+V
Sbjct: 133 DKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVF 192
Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDV-CREMESLRIKPDADTMASLLPS------- 240
++M ++VV+W SM+ GYA+ +A+D+ R + + P++ TM ++ +
Sbjct: 193 DEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDL 252
Query: 241 ---------VTNTSPE----------------NVLSV-KEMFLKLDNKNLVSWNVMIAVY 274
+ N+ E N + V K +F + NL N M + Y
Sbjct: 253 ETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNY 312
Query: 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334
+ EA+ ++ M G+ P+ IS+ S + +C L +L G+ H YV R +
Sbjct: 313 VRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWD 372
Query: 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM--- 391
+ NAL+DMY KC A +FD+M + VV+W S+++ Y +G+ A F M
Sbjct: 373 NICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEK 432
Query: 392 -------LMSGLC----------------------PDSIAFVSVLSACSHAGLLEEGRY- 421
++SGL D + +S+ SAC H G L+ ++
Sbjct: 433 NIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWI 492
Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462
Y+ I +L R+ LVD+ R G E A + +
Sbjct: 493 YYYIEKNGIQLDVRLG--TTLVDMFSRCGDPESAMSIFNSL 531
>sp|Q9LJR6|PP253_ARATH Putative pentatricopeptide repeat-containing protein At3g25060,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3
SV=1
Length = 601
Score = 315 bits (807), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 171/538 (31%), Positives = 295/538 (54%), Gaps = 35/538 (6%)
Query: 45 KTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRS 104
+ + ++HA +I +L + SI L+ + G G++ R VFDE+ + V +N +I
Sbjct: 31 RHITQIHAFVISTGNLLNGSSISRDLIASCGRIGEISYARKVFDELPQRGVSVYNSMIVV 90
Query: 105 YVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN 164
Y + L +Y M PD T+ +KAC L G + C V G +
Sbjct: 91 YSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEKGEAVWCKAVDFGYKND 150
Query: 165 LFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMES 224
+F + ++ +Y KCG + EA + M +DV+ W +MV G+AQ G+ +A++ REM++
Sbjct: 151 VFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQN 210
Query: 225 LRIKPDADTMASLLPSVTNTS-----------------PENVL---SVKEMFLKLD---- 260
D M LL + + P NV+ S+ +M+ K+
Sbjct: 211 EGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLVDMYAKVGFIEV 270
Query: 261 ---------NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD 311
K VSW +I+ +A N + +A + ++M+ G +P+ +++ VL AC
Sbjct: 271 ASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQ 330
Query: 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
+ +L GR +H Y+ ++ + + AL+DMY+KCG+L+ +R +F+ + +D+V W +M
Sbjct: 331 VGSLKTGRLVHCYILKRHVLDRVT-ATALMDMYSKCGALSSSREIFEHVGRKDLVCWNTM 389
Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
IS YG+ G G + V+LF KM S + PD F S+LSA SH+GL+E+G+++F +M +YK
Sbjct: 390 ISCYGIHGNGQEVVSLFLKMTESNIEPDHATFASLLSALSHSGLVEQGQHWFSVMINKYK 449
Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
+ P +H+ CL+DLL RAG+VEEA D+I ++ IW +L++ C + N+ +G +AA
Sbjct: 450 IQPSEKHYVCLIDLLARAGRVEEALDMINSEKLDNALPIWVALLSGCINHRNLSVGDIAA 509
Query: 492 DHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
+ I L P+ G L+SN +A A +W +V +VRK M + ++K+PG +++E+N +++
Sbjct: 510 NKILQLNPDSIGIQTLVSNFFATANKWKEVAKVRKLMRNGAMEKVPGYSAIEVNGELR 567
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 314 bits (804), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 186/547 (34%), Positives = 291/547 (53%), Gaps = 41/547 (7%)
Query: 44 IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
+K +++H +I + IG L+ Y CG + D R VF +T+K+ V +N +I
Sbjct: 329 LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMIT 388
Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
N + +A+ YK+M H P +T L +C+ +G QIH +K+G+D
Sbjct: 389 GLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDL 448
Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC---- 219
N+ N L+ +Y + G L E R++ + MP D V+WNS++ A++ R VC
Sbjct: 449 NVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNA 508
Query: 220 ----------------------------REMESLRIK---PDADTMASLLPSVTNTSPEN 248
+++ L +K D T + L + E
Sbjct: 509 QRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGE- 567
Query: 249 VLSVKEMFLKL-DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
+ +++F ++ + ++ V+WN MI+ Y +N + A+A+DL M G ++ A+VL
Sbjct: 568 MDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLS 627
Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS 367
A ++ L G ++H R L+ ++ + +ALVDMY+KCG L A F+ M ++ S
Sbjct: 628 AFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYS 687
Query: 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIM 426
W SMIS Y GQG +A+ LF M + G P D + FV VLSACSHAGLLEEG +F+ M
Sbjct: 688 WNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESM 747
Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN--M 484
++ Y L PRIEHF+C+ D+LGRAG++++ D I++MPM+PN IW +++ ACC +
Sbjct: 748 SDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKA 807
Query: 485 DIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEM 543
++G AA+ +F L P + YVLL N+YA GRW D+ + RK M +KK G S V M
Sbjct: 808 ELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTM 867
Query: 544 NDQVQII 550
D V +
Sbjct: 868 KDGVHMF 874
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 120/453 (26%), Positives = 202/453 (44%), Gaps = 49/453 (10%)
Query: 70 LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
L+ Y G V R VFDE+ +N V + ++ Y N + +AL ++M G +
Sbjct: 42 LINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSN 101
Query: 130 CYTYPCVLKACS--GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC-GCLKEARR 186
Y + VL+AC GS +L G QIH + K+ + N L++MY KC G + A
Sbjct: 102 QYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALC 161
Query: 187 VLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP 246
D+ K+ V+WNS+++ Y+Q G A + M+ +P T SL+ + + +
Sbjct: 162 AFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTE 221
Query: 247 ENV----------------------------------LS-VKEMFLKLDNKNLVSWNVMI 271
+V LS +++F +++ +N V+ N ++
Sbjct: 222 PDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLM 281
Query: 272 AVYANNSMPAEAVDLYLQM-EVHGIEPNA-ISVASVLP--ACGDLSALLLGRKIHRYVER 327
EA L++ M + + P + + + S P + + L GR++H +V
Sbjct: 282 VGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVIT 341
Query: 328 KKLQPNL-RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA 386
L + + N LV+MYAKCGS+ +AR VF M +D VSW SMI+ +G +AV
Sbjct: 342 TGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVE 401
Query: 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP--RIEHFACLVD 444
+ M + P S +S LS+C+ + G+ +I E KL + L+
Sbjct: 402 RYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQ---QIHGESLKLGIDLNVSVSNALMT 458
Query: 445 LLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
L G + E + MP E ++ W S++ A
Sbjct: 459 LYAETGYLNECRKIFSSMP-EHDQVSWNSIIGA 490
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/432 (26%), Positives = 190/432 (43%), Gaps = 42/432 (9%)
Query: 87 FDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY-PCVLKACSGSNS 145
F +I KN V +N +I Y A ++ +M G P YT+ V ACS +
Sbjct: 163 FGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEP 222
Query: 146 LLVGL-QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
+ L QI C++ K GL +LF G+GLV+ + K G L AR+V N M +++ VT N ++
Sbjct: 223 DVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMV 282
Query: 205 GYAQNGRFDEALDVCREMESL-RIKPDA-------------------------------- 231
G + +EA + +M S+ + P++
Sbjct: 283 GLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITT 342
Query: 232 ---DTMASLLPSVTNTSPE--NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
D M + + N + ++ + +F + +K+ VSWN MI N EAV+
Sbjct: 343 GLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVER 402
Query: 287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
Y M H I P + ++ S L +C L LG++IH + + N+ + NAL+ +YA+
Sbjct: 403 YKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAE 462
Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY-DAVALFSKMLMSGLCPDSIAFVS 405
G L E R +F M D VSW S+I A S + +AV F +G + I F S
Sbjct: 463 TGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSS 522
Query: 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME 465
VLSA S E G+ + + + L+ G+ G+++ + +M
Sbjct: 523 VLSAVSSLSFGELGKQIHGLALKN-NIADEATTENALIACYGKCGEMDGCEKIFSRMAER 581
Query: 466 PNERIWGSLVAA 477
+ W S+++
Sbjct: 582 RDNVTWNSMISG 593
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 135/306 (44%), Gaps = 41/306 (13%)
Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
H + K LD +++ N L+ Y + G AR+V ++MP ++ V+W +V+GY++NG
Sbjct: 23 FHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGE 82
Query: 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM---------------- 255
EAL R+M I + S+L + +L +++
Sbjct: 83 HKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVS 142
Query: 256 --------------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
F ++ KN VSWN +I+VY+ A ++ M+ G
Sbjct: 143 NVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGS 202
Query: 296 EPNAISVASVLPACGDLSA--LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
P + S++ L+ + L +I +++ L +L + + LV +AK GSL+ A
Sbjct: 203 RPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYA 262
Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM-LMSGLCPDSIAFVSVLSACSH 412
R VF+QM ++ V+ ++ G +A LF M M + P+S +V +LS+
Sbjct: 263 RKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPES--YVILLSSFPE 320
Query: 413 AGLLEE 418
L EE
Sbjct: 321 YSLAEE 326
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 36/207 (17%)
Query: 319 RKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378
R H + + +L ++ L N L++ Y + G AR VFD+M ++ VSW ++S Y +
Sbjct: 21 RFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRN 80
Query: 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE--EGRYYFKIMTE-------- 428
G+ +A+ M+ G+ + AFVSVL AC G + GR +M +
Sbjct: 81 GEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAV 140
Query: 429 --------QYKLVPRIEHFAC---------------LVDLLGRAGKVEEAYDLIKQMPME 465
+K + + + C ++ + +AG A+ + M +
Sbjct: 141 VSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYD 200
Query: 466 ---PNERIWGSLVAACCLYSNMDIGIL 489
P E +GSLV C + D+ +L
Sbjct: 201 GSRPTEYTFGSLVTTACSLTEPDVRLL 227
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 312 bits (800), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 188/611 (30%), Positives = 315/611 (51%), Gaps = 76/611 (12%)
Query: 7 LCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSI 66
L RH + + P Q + + +S ++++ ++ LK+ H +I S+P
Sbjct: 12 LPRHPNFSNPNQPTTNNERSRHIS------LIERCVSLRQLKQTHGHMIRTGTF-SDPYS 64
Query: 67 GLKL--MRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SV 123
KL M + + R VFDEI N +N LIR+Y + ++ + +M S
Sbjct: 65 ASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSE 124
Query: 124 HGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183
P+ YT+P ++KA + +SL +G +H VK + ++F N L+ Y CG L
Sbjct: 125 SQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDS 184
Query: 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--- 240
A +V + KDVV+WNSM+ G+ Q G D+AL++ ++MES +K TM +L +
Sbjct: 185 ACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAK 244
Query: 241 ---------VTNTSPENVLSV---------------------KEMFLKLDNKNLVSW--- 267
V + EN ++V K +F ++ K+ V+W
Sbjct: 245 IRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTM 304
Query: 268 ----------------------------NVMIAVYANNSMPAEAVDLYLQMEVH-GIEPN 298
N +I+ Y N P EA+ ++ ++++ ++ N
Sbjct: 305 LDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLN 364
Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
I++ S L AC + AL LGR IH Y+++ ++ N + +AL+ MY+KCG L ++R VF+
Sbjct: 365 QITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFN 424
Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
+ +DV W++MI M G G +AV +F KM + + P+ + F +V ACSH GL++E
Sbjct: 425 SVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDE 484
Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
F M Y +VP +H+AC+VD+LGR+G +E+A I+ MP+ P+ +WG+L+ AC
Sbjct: 485 AESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGAC 544
Query: 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538
+++N+++ +A + L P G +VLLSNIYAK G+W +V +RK M G+KK PG
Sbjct: 545 KIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPG 604
Query: 539 -ASVEMNDQVQ 548
+S+E++ +
Sbjct: 605 CSSIEIDGMIH 615
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 312 bits (799), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 161/480 (33%), Positives = 265/480 (55%), Gaps = 41/480 (8%)
Query: 63 NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMS 122
+P + M Y +CG++ R+VFDE+++++VV +N +I Y L +A +++ M
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204
Query: 123 VHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK--VGLDYNLFNGNGLVAMYGKCGC 180
PD ++ AC + ++ I+ +++ V +D +L LV MY GC
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTA--LVTMYAGAGC 262
Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
+ AR M +++ +MV+GY++ GR D+A
Sbjct: 263 MDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDA------------------------- 297
Query: 241 VTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
+ +F + + K+LV W MI+ Y + P EA+ ++ +M GI+P+ +
Sbjct: 298 ------------QVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVV 345
Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
S+ SV+ AC +L L + +H + L+ L + NAL++MYAKCG L R VF++M
Sbjct: 346 SMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKM 405
Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
++VVSW+SMI+A M G+ DA++LF++M + P+ + FV VL CSH+GL+EEG+
Sbjct: 406 PRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGK 465
Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
F MT++Y + P++EH+ C+VDL GRA + EA ++I+ MP+ N IWGSL++AC +
Sbjct: 466 KIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRI 525
Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
+ +++G AA I L P+ G VL+SNIYA+ RW DV+ +R+ M K + K G S
Sbjct: 526 HGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLS 585
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 163/353 (46%), Gaps = 31/353 (8%)
Query: 21 VLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQM 80
+L+ T+ +G C D+ ++ +K+ + N + ++ Y CG++
Sbjct: 249 LLTALVTMYAGAGCMDMAREF-----FRKMSVR---------NLFVSTAMVSGYSKCGRL 294
Query: 81 VDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC 140
D + +FD+ K++V + +I +YV + +AL V++ M G PD + V+ AC
Sbjct: 295 DDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISAC 354
Query: 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWN 200
+ L +H + GL+ L N L+ MY KCG L R V MP ++VV+W+
Sbjct: 355 ANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWS 414
Query: 201 SMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD 260
SM+ + +G +AL + M+ ++P+ T +L +++ V K++F +
Sbjct: 415 SMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGL--VEEGKKIFASMT 472
Query: 261 NK-----NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
++ L + M+ ++ ++ EA+++ M V N + S++ AC L
Sbjct: 473 DEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPV---ASNVVIWGSLMSACRIHGEL 529
Query: 316 LLGRKIHRYVERKKLQPNLRLENALV---DMYAKCGSLTEARTVFDQMRCQDV 365
LG ++ ++ L+ + ALV ++YA+ + R + M ++V
Sbjct: 530 ELG----KFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNV 578
>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3
SV=1
Length = 804
Score = 311 bits (798), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 179/525 (34%), Positives = 288/525 (54%), Gaps = 32/525 (6%)
Query: 48 KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
KK+HA ++I S+ + L+ Y G D VF+E+ +++V +N +I Y+
Sbjct: 150 KKIHA-MVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLA 208
Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY-NLF 166
+ +L ++K M GF PD ++ L ACS S +G +IHC V+ ++ ++
Sbjct: 209 LGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVM 268
Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM-ESL 225
++ MY K G + A R+ N M +++V WN M+ YA+NGR +A ++M E
Sbjct: 269 VMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQN 328
Query: 226 RIKPDADTMASLLPSVTNTS--------------PENVL---------------SVKEMF 256
++PD T +LLP+ P VL S + +F
Sbjct: 329 GLQPDVITSINLLPASAILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIF 388
Query: 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
++ KN++SWN +IA Y N A++L+ ++ + P++ ++AS+LPA + +L
Sbjct: 389 DRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLS 448
Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
GR+IH Y+ + + N + N+LV MYA CG L +AR F+ + +DVVSW S+I AY
Sbjct: 449 EGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYA 508
Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
+ G G +V LFS+M+ S + P+ F S+L+ACS +G+++EG YF+ M +Y + P I
Sbjct: 509 VHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGI 568
Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
EH+ C++DL+GR G A +++MP P RIWGSL+ A + ++ I AA+ IF
Sbjct: 569 EHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFK 628
Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
+ + +G YVLL N+YA+AGRW DV R++ M SKGI + S
Sbjct: 629 MEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRST 673
Score = 229 bits (583), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 145/479 (30%), Positives = 245/479 (51%), Gaps = 45/479 (9%)
Query: 69 KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
+ +R + M D +FDE+ + +NV+I+ + + LY +A+ Y M G
Sbjct: 69 RALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKA 128
Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
D +TYP V+K+ +G +SL G +IH V+K+G +++ N L+++Y K GC +A +V
Sbjct: 129 DTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVF 188
Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT-SPE 247
+MP +D+V+WNSM++GY G +L + +EM KPD + S L + ++ SP+
Sbjct: 189 EEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPK 248
Query: 248 ---------------------------------NVLSVKEMFLKLDNKNLVSWNVMIAVY 274
V + +F + +N+V+WNVMI Y
Sbjct: 249 MGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCY 308
Query: 275 ANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
A N +A + +M E +G++P+ I+ ++LPA SA+L GR IH Y R+ P+
Sbjct: 309 ARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPA----SAILEGRTIHGYAMRRGFLPH 364
Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393
+ LE AL+DMY +CG L A +FD+M ++V+SW S+I+AY +G+ Y A+ LF ++
Sbjct: 365 MVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWD 424
Query: 394 SGLCPDSIAFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
S L PDS S+L A + + L EGR + I+ +Y I LV + G +
Sbjct: 425 SSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTII--LNSLVHMYAMCGDL 482
Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF--HLAPNQSGYYVLLS 509
E+A + ++ + W S++ A ++ I + + + PN+S + LL+
Sbjct: 483 EDARKCFNHILLK-DVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLA 540
Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 74/328 (22%), Positives = 133/328 (40%), Gaps = 47/328 (14%)
Query: 37 ILDKYPDIKTL---KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
IL Y + +L +++HA I+ +++ SN I L+ Y CG + D R F+ I K
Sbjct: 437 ILPAYAESLSLSEGREIHAYIVKSRYW-SNTIILNSLVHMYAMCGDLEDARKCFNHILLK 495
Query: 94 NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIH 153
+VV +N +I +Y + ++ ++ M +P+ T+ +L ACS S + G +
Sbjct: 496 DVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYF 555
Query: 154 CSVVK-VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRF 212
S+ + G+D + + ++ + G+ G A+R L +MP
Sbjct: 556 ESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMP-------------------- 595
Query: 213 DEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS-VKEMFLKLDNKNLVSWNVMI 271
P A SLL + N + E K+++ N + +++
Sbjct: 596 --------------FVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLL 641
Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
+YA + + L ME GI + S S + A G G + H V K+
Sbjct: 642 NMYAEAGRWEDVNRIKLLMESKGI--SRTSSRSTVEAKGKSHVFTNGDRSH--VATNKIY 697
Query: 332 PNLRLENALV---DMYAKCGSLTEARTV 356
L + + +V D+Y C S T+
Sbjct: 698 EVLDVVSRMVGEEDIYVHCVSRLRPETL 725
>sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240
OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2
Length = 565
Score = 311 bits (797), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 178/502 (35%), Positives = 266/502 (52%), Gaps = 43/502 (8%)
Query: 84 RHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143
R VF+ I +V +N +IR Y N+ AL Y+ M G+ PD +T+P VLKACSG
Sbjct: 61 RSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGL 120
Query: 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV 203
+ G +H VVK G + N++ L+ MY CG + RV D+P +VV W S++
Sbjct: 121 RDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLI 180
Query: 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLL------------------------- 238
+G+ N RF +A++ REM+S +K + M LL
Sbjct: 181 SGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFD 240
Query: 239 PSVTNTSPENVL----------------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
P + NV+ + + +F + + LVSWN +I Y+ N E
Sbjct: 241 PYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEE 300
Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
A+ ++L M GI P+ ++ SV+ A LG+ IH YV + + + ALV+
Sbjct: 301 ALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVN 360
Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG-LCPDSI 401
MYAK G A+ F+ + +D ++WT +I G G +A+++F +M G PD I
Sbjct: 361 MYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGI 420
Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
++ VL ACSH GL+EEG+ YF M + + L P +EH+ C+VD+L RAG+ EEA L+K
Sbjct: 421 TYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKT 480
Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521
MP++PN IWG+L+ C ++ N+++ + SG YVLLSNIYAKAGRW DV
Sbjct: 481 MPVKPNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADV 540
Query: 522 KRVRKFMNSKGIKKMPG-ASVE 542
K +R+ M SK + K+ G +SVE
Sbjct: 541 KLIRESMKSKRVDKVLGHSSVE 562
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/379 (25%), Positives = 170/379 (44%), Gaps = 51/379 (13%)
Query: 43 DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
DI+ +H ++ N + L+ Y CG++ VF++I NVV + LI
Sbjct: 122 DIQFGSCVHG-FVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLI 180
Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
+VNN + DA+ ++ M +G + +L AC ++ G H + +G D
Sbjct: 181 SGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFD 240
Query: 163 --------YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
+N+ L+ MY KCG L+ AR + + MP + +V+WNS++ GY+QNG +E
Sbjct: 241 PYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEE 300
Query: 215 ALDVCREMESLRIKPDADTMASLLPS----------------VTNTS------------- 245
AL + +M L I PD T S++ + V+ T
Sbjct: 301 ALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVN 360
Query: 246 ----PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAI 300
+ S K+ F L+ K+ ++W V+I A++ EA+ ++ +M+ G P+ I
Sbjct: 361 MYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGI 420
Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKK----LQPNLRLENALVDMYAKCGSLTEARTV 356
+ VL AC + + G+ RY + L+P + +VD+ ++ G EA +
Sbjct: 421 TYLGVLYACSHIGLVEEGQ---RYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERL 477
Query: 357 FDQMRCQ-DVVSWTSMISA 374
M + +V W ++++
Sbjct: 478 VKTMPVKPNVNIWGALLNG 496
Score = 122 bits (305), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 162/367 (44%), Gaps = 45/367 (12%)
Query: 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG---CLKEARRVLN 189
Y +L SL+ Q+H ++K + N+ + L+ C L AR V
Sbjct: 6 YKPILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFE 65
Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
+ V WNSM+ GY+ + D+AL +EM PD T +L +
Sbjct: 66 SIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQF 125
Query: 241 -------VTNTSPENVLSVK-----------------EMFLKLDNKNLVSWNVMIAVYAN 276
V T E + V +F + N+V+W +I+ + N
Sbjct: 126 GSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVN 185
Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP---- 332
N+ ++A++ + +M+ +G++ N + +L ACG ++ G+ H +++ P
Sbjct: 186 NNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQS 245
Query: 333 ----NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF 388
N+ L +L+DMYAKCG L AR +FD M + +VSW S+I+ Y +G +A+ +F
Sbjct: 246 KVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMF 305
Query: 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448
ML G+ PD + F+SV+ A G + G+ +++ V LV++ +
Sbjct: 306 LDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKT-GFVKDAAIVCALVNMYAK 364
Query: 449 AGKVEEA 455
G E A
Sbjct: 365 TGDAESA 371
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 138/311 (44%), Gaps = 26/311 (8%)
Query: 236 SLLPSVTNTSPE--NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
S L T PE N+ + +F +D ++ WN MI Y+N+ P +A+ Y +M
Sbjct: 42 SRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRK 101
Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
G P+ + VL AC L + G +H +V + + N+ + L+ MY CG +
Sbjct: 102 GYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYG 161
Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
VF+ + +VV+W S+IS + + + DA+ F +M +G+ + V +L AC
Sbjct: 162 LRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRC 221
Query: 414 GLLEEGRYYFKIMTE-------QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP 466
+ G+++ + Q K+ + L+D+ + G + A L MP E
Sbjct: 222 KDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMP-ER 280
Query: 467 NERIWGSLVA----------ACCLYSNM-DIGILAADHIFHL----APNQSGYYVLLSNI 511
W S++ A C++ +M D+GI A D + L A G L +I
Sbjct: 281 TLVSWNSIITGYSQNGDAEEALCMFLDMLDLGI-APDKVTFLSVIRASMIQGCSQLGQSI 339
Query: 512 YAKAGRWGDVK 522
+A + G VK
Sbjct: 340 HAYVSKTGFVK 350
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 144/343 (41%), Gaps = 10/343 (2%)
Query: 28 LLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVF 87
L++ C DI+ L+ L + N + L+ Y CG + R++F
Sbjct: 215 LVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLF 274
Query: 88 DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLL 147
D + + +V +N +I Y N +AL ++ +M G PD T+ V++A
Sbjct: 275 DGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQ 334
Query: 148 VGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYA 207
+G IH V K G + LV MY K G + A++ D+ KD + W ++ G A
Sbjct: 335 LGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLA 394
Query: 208 QNGRFDEALDVCREM-ESLRIKPDADTMASLLPSVTNTS--PENVLSVKEMF-LKLDNKN 263
+G +EAL + + M E PD T +L + ++ E EM L
Sbjct: 395 SHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPT 454
Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR 323
+ + M+ + + EA L M V +PN ++L C L L +I
Sbjct: 455 VEHYGCMVDILSRAGRFEEAERLVKTMPV---KPNVNIWGALLNGCDIHENLELTDRIRS 511
Query: 324 YV-ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365
V E ++L + + L ++YAK G + + + + M+ + V
Sbjct: 512 MVAEPEELGSGIYV--LLSNIYAKAGRWADVKLIRESMKSKRV 552
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 310 bits (795), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 163/561 (29%), Positives = 293/561 (52%), Gaps = 41/561 (7%)
Query: 41 YPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100
+ D + + +H Q +++ S +G +++ Y ++ D R VFD + K+ + +N
Sbjct: 132 FRDDRAGRVIHGQAVVDG-CDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNT 190
Query: 101 LIRSYVNNYLYYDALHVYKNMSVHGFDP-DCYTYPCVLKACSGSNSLLVGLQIHCSVVKV 159
+I Y N +Y +++ V++++ D T +L A + L +G+QIH K
Sbjct: 191 MISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKT 250
Query: 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVC 219
G + + G +++Y KCG +K + + D+V +N+M+ GY NG + +L +
Sbjct: 251 GCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLF 310
Query: 220 REMESLRIKPDADTMASLLP------------------------------SVTNTSPENV 249
+E+ + + T+ SL+P + + +
Sbjct: 311 KELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEI 370
Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
S +++F + K+L SWN MI+ Y N + +A+ L+ +M+ PN +++ +L AC
Sbjct: 371 ESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSAC 430
Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
L AL LG+ +H V + ++ + AL+ MYAKCGS+ EAR +FD M ++ V+W
Sbjct: 431 AQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWN 490
Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
+MIS YG+ GQG +A+ +F +ML SG+ P + F+ VL ACSHAGL++EG F M +
Sbjct: 491 TMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHR 550
Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
Y P ++H+AC+VD+LGRAG ++ A I+ M +EP +W +L+ AC ++ + ++
Sbjct: 551 YGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLART 610
Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQI 549
++ +F L P+ GY+VLLSNI++ + VR+ + + K PG ++ ++I
Sbjct: 611 VSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTL-----IEI 665
Query: 550 IALPLRSSKCLTTGPKNVPPI 570
P T+G ++ P +
Sbjct: 666 GETP----HVFTSGDQSHPQV 682
Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 150/600 (25%), Positives = 266/600 (44%), Gaps = 85/600 (14%)
Query: 15 KPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTY 74
+ V + T L+S + D + I L + HAQII++ ++ S+ KL +
Sbjct: 4 RTVSSATAETTAALISKNTYLDFFKRSTSISHLAQTHAQIILHG-FRNDISLLTKLTQRL 62
Query: 75 GACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM-SVHGFDPDCYTY 133
G + R +F + +V FNVL+R + N + +L V+ ++ P+ TY
Sbjct: 63 SDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTY 122
Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
+ A SG G IH V G D L G+ +V MY K +++AR+V + MP
Sbjct: 123 AFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPE 182
Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREM--ESLRIKPDADTMASLLPSV---------- 241
KD + WN+M++GY +N + E++ V R++ ES + D T+ +LP+V
Sbjct: 183 KDTILWNTMISGYRKNEMYVESIQVFRDLINESC-TRLDTTTLLDILPAVAELQELRLGM 241
Query: 242 ------TNT---SPENVLS-----------VK---EMFLKLDNKNLVSWNVMIAVYANNS 278
T T S + VL+ +K +F + ++V++N MI Y +N
Sbjct: 242 QIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNG 301
Query: 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN 338
++ L+ ++ + G + ++ S++P G L+L IH Y + + +
Sbjct: 302 ETELSLSLFKELMLSGARLRSSTLVSLVPVSGH---LMLIYAIHGYCLKSNFLSHASVST 358
Query: 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398
AL +Y+K + AR +FD+ + + SW +MIS Y +G DA++LF +M S P
Sbjct: 359 ALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSP 418
Query: 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
+ + +LSAC+ G L G++ ++ I L+ + + G + EA L
Sbjct: 419 NPVTITCILSACAQLGALSLGKWVHDLV-RSTDFESSIYVSTALIGMYAKCGSIAEARRL 477
Query: 459 IKQMPMEPNERIWGSLVAA------------------------------CCLYSNMDIGI 488
M + NE W ++++ C LY+ G+
Sbjct: 478 FDLMT-KKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGL 536
Query: 489 L-AADHIFHLAPNQSGY------YVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV 541
+ D IF+ ++ G+ Y + +I GR G ++R +F+ + I+ PG+SV
Sbjct: 537 VKEGDEIFNSMIHRYGFEPSVKHYACMVDIL---GRAGHLQRALQFIEAMSIE--PGSSV 591
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/412 (22%), Positives = 180/412 (43%), Gaps = 45/412 (10%)
Query: 37 ILDKYPDIKTLKKLHAQIIINQ-----HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91
+LD P + L++L + I+ +S+ + + Y CG++ +F E
Sbjct: 224 LLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFR 283
Query: 92 NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQ 151
++V +N +I Y +N +L ++K + + G T ++ S L++
Sbjct: 284 KPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPV---SGHLMLIYA 340
Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
IH +K + L +Y K ++ AR++ ++ P K + +WN+M++GY QNG
Sbjct: 341 IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGL 400
Query: 212 FDEALDVCREMESLRIKPDADTMASLLPS----------------VTNTSPENVLSV--- 252
++A+ + REM+ P+ T+ +L + V +T E+ + V
Sbjct: 401 TEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTA 460
Query: 253 --------------KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
+ +F + KN V+WN MI+ Y + EA++++ +M GI P
Sbjct: 461 LIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPT 520
Query: 299 AISVASVLPACGDLSALLLGRKI-HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357
++ VL AC + G +I + + R +P+++ +VD+ + G L A
Sbjct: 521 PVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFI 580
Query: 358 DQMRCQDVVS-WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408
+ M + S W +++ A + A + K+ L PD++ + +LS
Sbjct: 581 EAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLF--ELDPDNVGYHVLLS 630
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 310 bits (794), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/463 (35%), Positives = 254/463 (54%), Gaps = 38/463 (8%)
Query: 86 VFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145
+F +I N N+ FN+LIR + A Y M PD T+P ++KA S
Sbjct: 73 IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132
Query: 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAG 205
+LVG Q H +V+ G +++ N LV MY CG + A R+ M +DVV+W SMVAG
Sbjct: 133 VLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAG 192
Query: 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265
Y + G + A +EMF ++ ++NL
Sbjct: 193 YCKCGMVENA-------------------------------------REMFDEMPHRNLF 215
Query: 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325
+W++MI YA N+ +A+DL+ M+ G+ N + SV+ +C L AL G + + YV
Sbjct: 216 TWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYV 275
Query: 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAV 385
+ + NL L ALVDM+ +CG + +A VF+ + D +SW+S+I + G + A+
Sbjct: 276 VKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAM 335
Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445
FS+M+ G P + F +VLSACSH GL+E+G ++ M + + + PR+EH+ C+VD+
Sbjct: 336 HYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDM 395
Query: 446 LGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505
LGRAGK+ EA + I +M ++PN I G+L+ AC +Y N ++ + + + P SGYY
Sbjct: 396 LGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYY 455
Query: 506 VLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
VLLSNIYA AG+W ++ +R M K +KK PG S +E++ ++
Sbjct: 456 VLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKI 498
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 132/274 (48%), Gaps = 34/274 (12%)
Query: 242 TNTSPENVLSVK-EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
T P N+L +F ++ N NL +N++I ++ + P++A Y QM I P+ I
Sbjct: 59 TFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNI 118
Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
+ ++ A ++ +L+G + H + R Q ++ +EN+LV MYA CG + A +F QM
Sbjct: 119 TFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQM 178
Query: 361 RCQDVVSWTSMISAYGMSG------------------------QGY-------DAVALFS 389
+DVVSWTSM++ Y G GY A+ LF
Sbjct: 179 GFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFE 238
Query: 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449
M G+ + VSV+S+C+H G LE G ++ + + + V I A LVD+ R
Sbjct: 239 FMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTA-LVDMFWRC 297
Query: 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483
G +E+A + + +P E + W S++ ++ +
Sbjct: 298 GDIEKAIHVFEGLP-ETDSLSWSSIIKGLAVHGH 330
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 120/240 (50%), Gaps = 8/240 (3%)
Query: 74 YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
Y CG + + R +FDE+ ++N+ ++++I Y N + A+ +++ M G +
Sbjct: 193 YCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVM 252
Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
V+ +C+ +L G + + VVK + NL G LV M+ +CG +++A V +P
Sbjct: 253 VSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPE 312
Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS-PENVLSV 252
D ++W+S++ G A +G +A+ +M SL P T ++L + ++ E L +
Sbjct: 313 TDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEI 372
Query: 253 KEMFLKLDNK---NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
E +K D+ L + ++ + AEA + L+M V +PNA + ++L AC
Sbjct: 373 YEN-MKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHV---KPNAPILGALLGAC 428
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 1/143 (0%)
Query: 53 QIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYY 112
+ ++ H+ N +G L+ + CG + HVF+ + + + ++ +I+ + +
Sbjct: 273 EYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAH 332
Query: 113 DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYNLFNGNGL 171
A+H + M GF P T+ VL ACS + GL+I+ ++ K G++ L + +
Sbjct: 333 KAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCI 392
Query: 172 VAMYGKCGCLKEARRVLNDMPSK 194
V M G+ G L EA + M K
Sbjct: 393 VDMLGRAGKLAEAENFILKMHVK 415
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 310 bits (793), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 185/547 (33%), Positives = 291/547 (53%), Gaps = 43/547 (7%)
Query: 43 DIKTLKKLHAQII---INQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99
D+ K+LHAQ+I + HL + + L+ Y QM D VF I K+++ ++
Sbjct: 183 DVGLGKQLHAQVIKLESSSHLIAQNA----LIAMYVRFNQMSDASRVFYGIPMKDLISWS 238
Query: 100 VLIRSYVNNYLYYDAL-HVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158
+I + ++AL H+ + +S F P+ Y + LKACS G QIH +K
Sbjct: 239 SIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIK 298
Query: 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDV 218
L N G L MY +CG L ARRV + + D +WN ++AG A NG DEA+ V
Sbjct: 299 SELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSV 358
Query: 219 CREMESLRIKPDADTMASLLPSVTN-----------------------TSPENVLSVKEM 255
+M S PDA ++ SLL + T T ++L++
Sbjct: 359 FSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTF 418
Query: 256 FLKL-----------DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
L +N + VSWN ++ + P E + L+ M V EP+ I++ +
Sbjct: 419 CSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGN 478
Query: 305 VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
+L C ++S+L LG ++H Y + L P ++N L+DMYAKCGSL +AR +FD M +D
Sbjct: 479 LLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRD 538
Query: 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
VVSW+++I Y SG G +A+ LF +M +G+ P+ + FV VL+ACSH GL+EEG +
Sbjct: 539 VVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYA 598
Query: 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNM 484
M ++ + P EH +C+VDLL RAG++ EA I +M +EP+ +W +L++AC N+
Sbjct: 599 TMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNV 658
Query: 485 DIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEM 543
+ AA++I + P S +VLL +++A +G W + +R M +KK+PG S +E+
Sbjct: 659 HLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEI 718
Query: 544 NDQVQII 550
D++ I
Sbjct: 719 EDKIHIF 725
Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 145/546 (26%), Positives = 248/546 (45%), Gaps = 71/546 (13%)
Query: 48 KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
+K+H I+ N + + + ++ YG CG + D R VFD + +N+V + +I Y
Sbjct: 87 RKIHDHIL-NSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQ 145
Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
N +A+ +Y M PD + + ++KAC+ S+ + +G Q+H V+K+ +L
Sbjct: 146 NGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIA 205
Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
N L+AMY + + +A RV +P KD+++W+S++AG++Q G EAL +EM S +
Sbjct: 206 QNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGV 265
Query: 228 -KPDADTMASLLPSVTN-TSPE----------------NVL----------------SVK 253
P+ S L + ++ P+ N + S +
Sbjct: 266 FHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSAR 325
Query: 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
+F +++ + SWNV+IA ANN EAV ++ QM G P+AIS+ S+L A
Sbjct: 326 RVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPM 385
Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVVSWTSMI 372
AL G +IH Y+ + +L + N+L+ MY C L +F+ R D VSW +++
Sbjct: 386 ALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTIL 445
Query: 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR----YYFK--IM 426
+A Q + + LF ML+S PD I ++L C L+ G Y K +
Sbjct: 446 TACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLA 505
Query: 427 TEQYKLVPRIEHFA------------------------CLVDLLGRAGKVEEAYDLIKQM 462
EQ+ I+ +A L+ ++G EEA L K+M
Sbjct: 506 PEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEM 565
Query: 463 P---MEPNERIWGSLVAACCLYSNMDIG--ILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
+EPN + ++ AC ++ G + A H + + ++ A+AGR
Sbjct: 566 KSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGR 625
Query: 518 WGDVKR 523
+ +R
Sbjct: 626 LNEAER 631
Score = 159 bits (401), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 140/531 (26%), Positives = 235/531 (44%), Gaps = 84/531 (15%)
Query: 79 QMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVY----KNMSVHGFDPDCYTYP 134
Q++ T V I + ++ N I S + Y +AL + KN S F TY
Sbjct: 17 QILATSSVVSTIKTEELM--NDHINSLCKSNFYREALEAFDFAQKNSS---FKIRLRTYI 71
Query: 135 CVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK 194
++ ACS S SL G +IH ++ Y+ N +++MYGKCG L++AR V + MP +
Sbjct: 72 SLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPER 131
Query: 195 DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS--------- 245
++V++ S++ GY+QNG+ EA+ + +M + PD S++ + ++S
Sbjct: 132 NLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLH 191
Query: 246 -------------PENVL-----------SVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281
+N L +F + K+L+SW+ +IA ++
Sbjct: 192 AQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEF 251
Query: 282 EAVDLYLQMEVHGI-EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340
EA+ +M G+ PN S L AC L G +IH + +L N +L
Sbjct: 252 EALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSL 311
Query: 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
DMYA+CG L AR VFDQ+ D SW +I+ +G +AV++FS+M SG PD+
Sbjct: 312 CDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDA 371
Query: 401 IAFVSVLSACSHAGLLEEG----RYYFK------------------IMTEQYKLVPRIEH 438
I+ S+L A + L +G Y K ++ Y E
Sbjct: 372 ISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFED 431
Query: 439 FACLVD------LLGRAGKVEEAYDLIKQMPM------EPNERIWGSLVAACCLYSNMDI 486
F D +L + E+ ++++ + EP+ G+L+ C S++ +
Sbjct: 432 FRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKL 491
Query: 487 GILAADHIFH----LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
G + H + LAP Q L+ ++YAK G G +R+ M+++ +
Sbjct: 492 G--SQVHCYSLKTGLAPEQFIKNGLI-DMYAKCGSLGQARRIFDSMDNRDV 539
>sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containing protein At1g69350,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3
SV=1
Length = 787
Score = 309 bits (792), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 177/538 (32%), Positives = 296/538 (55%), Gaps = 37/538 (6%)
Query: 44 IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
++ + +H QI + + ++ L+ Y CG ++ + +F++I KN V + +I
Sbjct: 218 LRIARSVHGQIT-RKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMIS 276
Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
SY AL + M G +P+ T VL +C + G +H V+ LD
Sbjct: 277 SYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDP 336
Query: 164 NLFNGN-GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
N + + LV +Y +CG L + VL + +++V WNS+++ YA G +AL + R+M
Sbjct: 337 NYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQM 396
Query: 223 ESLRIKPDADTMASLLPSVTN--------------------------------TSPENVL 250
+ RIKPDA T+AS + + N + +V
Sbjct: 397 VTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDVSDEFVQNSLIDMYSKSGSVD 456
Query: 251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
S +F ++ ++++V+WN M+ ++ N EA+ L+ M +E N ++ +V+ AC
Sbjct: 457 SASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACS 516
Query: 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
+ +L G+ +H + L+ +L + AL+DMYAKCG L A TVF M + +VSW+S
Sbjct: 517 SIGSLEKGKWVHHKLIISGLK-DLFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSS 575
Query: 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
MI+AYGM G+ A++ F++M+ SG P+ + F++VLSAC H+G +EEG+YYF +M + +
Sbjct: 576 MINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLM-KSF 634
Query: 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILA 490
+ P EHFAC +DLL R+G ++EAY IK+MP + +WGSLV C ++ MDI
Sbjct: 635 GVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAI 694
Query: 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
+ + + + +GYY LLSNIYA+ G W + +R+R M S +KK+PG +++E++ +V
Sbjct: 695 KNDLSDIVTDDTGYYTLLSNIYAEEGEWEEFRRLRSAMKSSNLKKVPGYSAIEIDQKV 752
Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 108/437 (24%), Positives = 199/437 (45%), Gaps = 76/437 (17%)
Query: 44 IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103
++ + +LHA +++ L +P KL+ +Y G +R VF+ + + VLI+
Sbjct: 14 LRLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIK 73
Query: 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS-LLVGLQIHCSVVKVGLD 162
V +L A+ +Y + + +P VL+AC+GS L VG ++H ++K G+D
Sbjct: 74 CNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGGKVHGRIIKGGVD 133
Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
D V S++ Y Q G +A
Sbjct: 134 -------------------------------DDAVIETSLLCMYGQTGNLSDA------- 155
Query: 223 ESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
+++F + ++LV+W+ +++ N +
Sbjct: 156 ------------------------------EKVFDGMPVRDLVAWSTLVSSCLENGEVVK 185
Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
A+ ++ M G+EP+A+++ SV+ C +L L + R +H + RK + L N+L+
Sbjct: 186 ALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLLT 245
Query: 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402
MY+KCG L + +F+++ ++ VSWT+MIS+Y A+ FS+M+ SG+ P+ +
Sbjct: 246 MYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVT 305
Query: 403 FVSVLSACSHAGLLEEGR--YYFKIMTEQYKLVPRIEHFA-CLVDLLGRAGKVEEAYDLI 459
SVLS+C GL+ EG+ + F + E L P E + LV+L GK+ + ++
Sbjct: 306 LYSVLSSCGLIGLIREGKSVHGFAVRRE---LDPNYESLSLALVELYAECGKLSDCETVL 362
Query: 460 KQMPMEPNERIWGSLVA 476
+ + + N W SL++
Sbjct: 363 RVVS-DRNIVAWNSLIS 378
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 308 bits (790), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 166/518 (32%), Positives = 281/518 (54%), Gaps = 31/518 (5%)
Query: 54 IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
+++ L + L+ Y CG + R +FD+ K+VV +N +I Y N L +
Sbjct: 219 VVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLE 278
Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
AL ++ +M ++ ++ V+K C+ L Q+HCSVVK G ++ L+
Sbjct: 279 ALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMV 338
Query: 174 MYGKCGCLKEARRVLNDMPS-KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
Y KC + +A R+ ++ +VV+W +M++G+ QN +EA+D+ EM+ ++P+
Sbjct: 339 AYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEF 398
Query: 233 TMASLLPSVTNTSPENVLS-----------------------------VKEMFLKLDNKN 263
T + +L ++ SP V + ++F +D+K+
Sbjct: 399 TYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKD 458
Query: 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL-LGRKIH 322
+V+W+ M+A YA A+ ++ ++ GI+PN + +S+L C +A + G++ H
Sbjct: 459 IVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFH 518
Query: 323 RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY 382
+ + +L +L + +AL+ MYAK G++ A VF + R +D+VSW SMIS Y GQ
Sbjct: 519 GFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAM 578
Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL 442
A+ +F +M + D + F+ V +AC+HAGL+EEG YF IM K+ P EH +C+
Sbjct: 579 KALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCM 638
Query: 443 VDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS 502
VDL RAG++E+A +I+ MP IW +++AAC ++ ++G LAA+ I + P S
Sbjct: 639 VDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDS 698
Query: 503 GYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
YVLLSN+YA++G W + +VRK MN + +KK PG S
Sbjct: 699 AAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYS 736
Score = 189 bits (479), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 129/469 (27%), Positives = 220/469 (46%), Gaps = 50/469 (10%)
Query: 48 KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
++LH Q I L + S+G L+ TY D R VFDE+ +NVV + LI Y
Sbjct: 113 RQLHCQCIKFGFL-DDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYAR 171
Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
N + + L ++ M G P+ +T+ L + GLQ+H VVK GLD +
Sbjct: 172 NSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 231
Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
N L+ +Y KCG +++AR + + K VVTWNSM++GYA NG EAL + M +
Sbjct: 232 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV 291
Query: 228 KPDADTMASLLPSVTN------TSPENVLSVKEMFLKLDN-------------------- 261
+ + AS++ N T + VK FL N
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351
Query: 262 --------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313
N+VSW MI+ + N EAVDL+ +M+ G+ PN + + +L A +S
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVIS 411
Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
++H V + + + + AL+D Y K G + EA VF + +D+V+W++M++
Sbjct: 412 P----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLA 467
Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL-LEEGRYYFKIMTEQYKL 432
Y +G+ A+ +F ++ G+ P+ F S+L+ C+ + +G+ + + +
Sbjct: 468 GYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQF-----HGFAI 522
Query: 433 VPRIEHFAC----LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
R++ C L+ + + G +E A ++ K+ E + W S+++
Sbjct: 523 KSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQ-REKDLVSWNSMISG 570
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/488 (23%), Positives = 224/488 (45%), Gaps = 42/488 (8%)
Query: 76 ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC 135
+ ++ + ++FD+ ++ + L+ + + +A ++ N+ G + DC +
Sbjct: 39 SSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSS 98
Query: 136 VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKD 195
VLK + L G Q+HC +K G ++ G LV Y K K+ R+V ++M ++
Sbjct: 99 VLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERN 158
Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP---------------- 239
VVTW ++++GYA+N DE L + M++ +P++ T A+ L
Sbjct: 159 VVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHT 218
Query: 240 -----SVTNTSP------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE 282
+ T P NV + +F K + K++V+WN MI+ YA N + E
Sbjct: 219 VVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLE 278
Query: 283 AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342
A+ ++ M ++ + + S ASV+ C +L L ++H V + + + AL+
Sbjct: 279 ALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMV 338
Query: 343 MYAKCGSLTEARTVFDQMRC-QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI 401
Y+KC ++ +A +F ++ C +VVSWT+MIS + + +AV LFS+M G+ P+
Sbjct: 339 AYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEF 398
Query: 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461
+ +L+A ++ + +++ Y+ + L+D + GKVEEA +
Sbjct: 399 TYSVILTALP---VISPSEVHAQVVKTNYERSSTVG--TALLDAYVKLGKVEEAAKVFSG 453
Query: 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH--LAPNQSGYYVLLSNIYAKAGRWG 519
+ + + W +++A + I + + PN+ + +L+ A G
Sbjct: 454 ID-DKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMG 512
Query: 520 DVKRVRKF 527
K+ F
Sbjct: 513 QGKQFHGF 520
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 109/196 (55%), Gaps = 2/196 (1%)
Query: 49 KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
++HAQ++ + S+ ++G L+ Y G++ + VF I +K++V ++ ++ Y
Sbjct: 414 EVHAQVVKTNYERSS-TVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQT 472
Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN-SLLVGLQIHCSVVKVGLDYNLFN 167
A+ ++ ++ G P+ +T+ +L C+ +N S+ G Q H +K LD +L
Sbjct: 473 GETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCV 532
Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
+ L+ MY K G ++ A V KD+V+WNSM++GYAQ+G+ +ALDV +EM+ ++
Sbjct: 533 SSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKV 592
Query: 228 KPDADTMASLLPSVTN 243
K D T + + T+
Sbjct: 593 KMDGVTFIGVFAACTH 608
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 307 bits (787), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 176/570 (30%), Positives = 296/570 (51%), Gaps = 52/570 (9%)
Query: 9 RHFSTTKPVQALVLSTQYTLLSGDACND---ILDKYPDIKTLKKLHAQIIINQHLHSNPS 65
R F KP Q GD D +L K + L+++ AQ+++ H P+
Sbjct: 18 RQFPKFKPRQF------EEARRGDLERDFLFLLKKCISVNQLRQIQAQMLL--HSVEKPN 69
Query: 66 IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA-LHVYKNMSVH 124
L+ G + +F N FN +IR N + ++A L +Y+ M
Sbjct: 70 F---LIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFS 126
Query: 125 GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
G PD +TY V AC+ + VG +H S+ KVGL+ ++ + L+ MY KCG + A
Sbjct: 127 GLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYA 186
Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
R++ +++ +D V+WNSM++GY++ G +A+D+ R+ME +PD T+ S+L + ++
Sbjct: 187 RKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHL 246
Query: 245 SP---------------------------------ENVLSVKEMFLKLDNKNLVSWNVMI 271
++ S + +F ++ K+ V+W MI
Sbjct: 247 GDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMI 306
Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
VY+ N +EA L+ +ME G+ P+A ++++VL ACG + AL LG++I + LQ
Sbjct: 307 TVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQ 366
Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391
N+ + LVDMY KCG + EA VF+ M ++ +W +MI+AY G +A+ LF +M
Sbjct: 367 HNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM 426
Query: 392 LMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
+ P I F+ VLSAC HAGL+ +G YF M+ + LVP+IEH+ ++DLL RAG
Sbjct: 427 ---SVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGM 483
Query: 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ-SGYYVLLSN 510
++EA++ +++ P +P+E + +++ AC ++ I A + + + +G YV+ SN
Sbjct: 484 LDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSN 543
Query: 511 IYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
+ A W + ++R M +G+ K PG S
Sbjct: 544 VLADMKMWDESAKMRALMRDRGVVKTPGCS 573
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 307 bits (787), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 172/531 (32%), Positives = 277/531 (52%), Gaps = 54/531 (10%)
Query: 74 YGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133
Y C M D + +FD N N +N +I Y + AL ++ + G D +
Sbjct: 326 YAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISL 385
Query: 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193
V +AC+ L GLQI+ +K L ++ N + MYGKC L EA RV ++M
Sbjct: 386 SGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRR 445
Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTS-------- 245
+D V+WN+++A + QNG+ E L + M RI+PD T S+L + T S
Sbjct: 446 RDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSLGYGMEIH 505
Query: 246 ----------------------------------------PENVLSVKEMFLKLDNKNL- 264
NV E K+ NK L
Sbjct: 506 SSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQ 565
Query: 265 ---VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
VSWN +I+ Y +A L+ +M GI P+ + A+VL C +L++ LG++I
Sbjct: 566 EMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQI 625
Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
H V +K+LQ ++ + + LVDMY+KCG L ++R +F++ +D V+W +MI Y G+G
Sbjct: 626 HAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKG 685
Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
+A+ LF +M++ + P+ + F+S+L AC+H GL+++G YF +M Y L P++ H++
Sbjct: 686 EEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSN 745
Query: 442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY-SNMDIGILAADHIFHLAPN 500
+VD+LG++GKV+ A +LI++MP E ++ IW +L+ C ++ +N+++ A + L P
Sbjct: 746 MVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQ 805
Query: 501 QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
S Y LLSN+YA AG W V +R+ M +KK PG S VE+ D++ +
Sbjct: 806 DSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVF 856
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/422 (27%), Positives = 199/422 (47%), Gaps = 39/422 (9%)
Query: 69 KLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128
K++ Y M F+ + ++VV +N ++ Y+ N ++ V+ +M G +
Sbjct: 119 KMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEF 178
Query: 129 DCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188
D T+ +LK CS +G+QIH VV+VG D ++ + L+ MY K E+ RV
Sbjct: 179 DGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVF 238
Query: 189 NDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP-- 246
+P K+ V+W++++AG QN AL +EM+ + AS+L S S
Sbjct: 239 QGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELR 298
Query: 247 -------------------------------ENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
+N+ + +F +N N S+N MI Y+
Sbjct: 299 LGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYS 358
Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335
+A+ L+ ++ G+ + IS++ V AC + L G +I+ + L ++
Sbjct: 359 QEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVC 418
Query: 336 LENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
+ NA +DMY KC +L EA VFD+MR +D VSW ++I+A+ +G+GY+ + LF ML S
Sbjct: 419 VANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSR 478
Query: 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK--LVPRIEHFACLVDLLGRAGKVE 453
+ PD F S+L AC+ L Y +I + K + L+D+ + G +E
Sbjct: 479 IEPDEFTFGSILKACTGGSL----GYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIE 534
Query: 454 EA 455
EA
Sbjct: 535 EA 536
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 182/397 (45%), Gaps = 43/397 (10%)
Query: 116 HVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMY 175
+ +M + GF P + C+L+ + S + + K+ L ++ + N ++ Y
Sbjct: 69 QAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMV---FDKMPLR-DVVSWNKMINGY 124
Query: 176 GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR----------------------FD 213
K + +A N MP +DVV+WNSM++GY QNG F
Sbjct: 125 SKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFA 184
Query: 214 EALDVCREMES-----------LRIKPDADTMA-SLLPSVTNTSPENVLSVKEMFLKLDN 261
L VC +E +R+ D D +A S L + V S++ +F +
Sbjct: 185 IILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLR-VFQGIPE 243
Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
KN VSW+ +IA N++ + A+ + +M+ + ASVL +C LS L LG ++
Sbjct: 244 KNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQL 303
Query: 322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
H + + + + A +DMYAKC ++ +A+ +FD + S+ +MI+ Y G
Sbjct: 304 HAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHG 363
Query: 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG-RYYFKIMTEQYKLVPRIEHFA 440
+ A+ LF +++ SGL D I+ V AC+ L EG + Y + L + + A
Sbjct: 364 FKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAA 423
Query: 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
+D+ G+ + EA+ + +M + W +++AA
Sbjct: 424 --IDMYGKCQALAEAFRVFDEMR-RRDAVSWNAIIAA 457
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 99/204 (48%), Gaps = 20/204 (9%)
Query: 55 IINQHLHSNPSIGLKLMRTYGACGQMVDTRHV----------------FDEITNKNV--- 95
I+ + SN S+G L+ Y CG + + + +++ NK +
Sbjct: 508 IVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEM 567
Query: 96 -VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
V +N +I YV DA ++ M G PD +TY VL C+ S +G QIH
Sbjct: 568 CVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHA 627
Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
V+K L +++ + LV MY KCG L ++R + +D VTWN+M+ GYA +G+ +E
Sbjct: 628 QVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEE 687
Query: 215 ALDVCREMESLRIKPDADTMASLL 238
A+ + M IKP+ T S+L
Sbjct: 688 AIQLFERMILENIKPNHVTFISIL 711
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 125/282 (44%), Gaps = 39/282 (13%)
Query: 48 KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
K++HAQ+I + L S+ I L+ Y CG + D+R +F++ ++ V +N +I Y +
Sbjct: 623 KQIHAQVI-KKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAH 681
Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK-VGLDYNLF 166
+ +A+ +++ M + P+ T+ +L+AC+ + GL+ + + GLD L
Sbjct: 682 HGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLP 741
Query: 167 NGNGLVAMYGKCGCLKEARRVLNDMP-SKDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225
+ + +V + GK G +K A ++ +MP D V W ++ L VC
Sbjct: 742 HYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTL-------------LGVC------ 782
Query: 226 RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285
++ + E L+LD ++ ++ ++ VYA+ M + D
Sbjct: 783 --------------TIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSD 828
Query: 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH-RYVE 326
L M G + S + +L L+G K H R+ E
Sbjct: 829 LRRNM--RGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEE 868
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 34/216 (15%)
Query: 296 EPNAISVAS---VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
+ N++S + V C AL LG++ H ++ +P + N L+ +Y
Sbjct: 42 QVNSVSTTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVS 101
Query: 353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM----------LMSGLCP--DS 400
A VFD+M +DVVSW MI+ Y S + A + F+ M ++SG +S
Sbjct: 102 ASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGES 161
Query: 401 IAFVSVLSACSHAGLLEEGRYYFKIMT------------EQYKLVPRIE------HFACL 442
+ + V G+ +GR + I+ + + +V R+ + L
Sbjct: 162 LKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASAL 221
Query: 443 VDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
+D+ + + E+ + + +P E N W +++A C
Sbjct: 222 LDMYAKGKRFVESLRVFQGIP-EKNSVSWSAIIAGC 256
>sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570
OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1
Length = 611
Score = 307 bits (786), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 175/511 (34%), Positives = 282/511 (55%), Gaps = 37/511 (7%)
Query: 66 IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125
+ L+ +Y G + + R +FDE+ +++VV + +I Y ++ A + M G
Sbjct: 47 LATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQG 106
Query: 126 FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185
P+ +T VLK+C L G +H VVK+G++ +L+ N ++ MY C EA
Sbjct: 107 TSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAA 166
Query: 186 -RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM--ESLRIKPDADTMA------- 235
+ D+ K+ VTW +++ G+ G L + ++M E+ + P T+A
Sbjct: 167 CLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASI 226
Query: 236 -------SLLPSVTNTSPENVLSV-----------------KEMFLKLDNKNLVSWNVMI 271
+ SV ++ L V K F ++++K+L++WN +I
Sbjct: 227 DSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLI 286
Query: 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331
+ S +EA+ ++ + E G PN + S++ AC +++AL G+++H + R+
Sbjct: 287 SEL-ERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFN 345
Query: 332 PNLRLENALVDMYAKCGSLTEARTVFDQM-RCQDVVSWTSMISAYGMSGQGYDAVALFSK 390
N+ L NAL+DMYAKCG++ +++ VF ++ +++VSWTSM+ YG G G +AV LF K
Sbjct: 346 KNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDK 405
Query: 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450
M+ SG+ PD I F++VLSAC HAGL+E+G YF +M +Y + P + + C+VDLLGRAG
Sbjct: 406 MVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAG 465
Query: 451 KVEEAYDLIKQMPMEPNERIWGSLVAACCLYS-NMDIGILAADHIFHLAPNQSGYYVLLS 509
K+ EAY+L+++MP +P+E WG+++ AC + N I LAA + L P G YV+LS
Sbjct: 466 KIGEAYELVERMPFKPDESTWGAILGACKAHKHNGLISRLAARKVMELKPKMVGTYVMLS 525
Query: 510 NIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
IYA G+W D RVRK M G KK G S
Sbjct: 526 YIYAAEGKWVDFARVRKMMRMMGNKKEAGMS 556
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 305 bits (782), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 173/517 (33%), Positives = 286/517 (55%), Gaps = 46/517 (8%)
Query: 37 ILDKYPDIKTLKKLHAQIII-NQHLHSN-PSIGLKLMRTYGACGQMVDTRHVFDEITNKN 94
++DK + + ++HA I+ N LH P + LKL R Y + G++ + +F + + +
Sbjct: 35 LIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPD 94
Query: 95 VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHC 154
+ F I + N L A +Y + +P+ +T+ +LK+CS + L IH
Sbjct: 95 LFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSGKL----IHT 150
Query: 155 SVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214
V+K GL + + GLV +Y K G + A++V + MP + +V+ +M+ YA+ G
Sbjct: 151 HVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQG---- 206
Query: 215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274
NV + + +F + +++VSWNVMI Y
Sbjct: 207 ---------------------------------NVEAARALFDSMCERDIVSWNVMIDGY 233
Query: 275 ANNSMPAEAVDLYLQMEVHGI-EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333
A + P +A+ L+ ++ G +P+ I+V + L AC + AL GR IH +V+ +++ N
Sbjct: 234 AQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLN 293
Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML- 392
+++ L+DMY+KCGSL EA VF+ +D+V+W +MI+ Y M G DA+ LF++M
Sbjct: 294 VKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQG 353
Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
++GL P I F+ L AC+HAGL+ EG F+ M ++Y + P+IEH+ CLV LLGRAG++
Sbjct: 354 ITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQL 413
Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
+ AY+ IK M M+ + +W S++ +C L+ + +G A+++ L SG YVLLSNIY
Sbjct: 414 KRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIY 473
Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQVQ 548
A G + V +VR M KGI K PG +++E+ ++V
Sbjct: 474 ASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVH 510
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 305 bits (780), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 166/518 (32%), Positives = 281/518 (54%), Gaps = 45/518 (8%)
Query: 38 LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVD--TRHVFDEITNKNV 95
LD ++ +K++H ++ + L + I KL+RT G +D R V + + +N
Sbjct: 56 LDDCINLNQIKQIHGHVL-RKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNP 114
Query: 96 VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155
+ +IR Y + +A+ +Y M P +T+ +LKAC L +G Q H
Sbjct: 115 FLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQ 174
Query: 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215
++ ++ GN ++ MY KC + AR+V ++MP +DV++W ++A YA+ G
Sbjct: 175 TFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVG----- 229
Query: 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYA 275
N+ E+F L K++V+W M+ +A
Sbjct: 230 --------------------------------NMECAAELFESLPTKDMVAWTAMVTGFA 257
Query: 276 NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP--N 333
N+ P EA++ + +ME GI + ++VA + AC L A + + ++ P +
Sbjct: 258 QNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDH 317
Query: 334 LRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML- 392
+ + +AL+DMY+KCG++ EA VF M ++V +++SMI G+ +A+ LF M+
Sbjct: 318 VVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVT 377
Query: 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452
+ + P+++ FV L ACSH+GL+++GR F M + + + P +H+ C+VDLLGR G++
Sbjct: 378 QTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRL 437
Query: 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512
+EA +LIK M +EP+ +WG+L+ AC +++N +I +AA+H+F L P+ G Y+LLSN+Y
Sbjct: 438 QEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVY 497
Query: 513 AKAGRWGDVKRVRKFMNSKGIKKMPGAS--VEMNDQVQ 548
A AG WG V RVRK + KG+KK P S V+ N Q+
Sbjct: 498 ASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMH 535
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 7/187 (3%)
Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE--ARTVFD 358
S+ S L C +L+ + ++IH +V RK L + + L+ K G + AR V +
Sbjct: 51 SLISKLDDCINLNQI---KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIE 107
Query: 359 QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418
++ ++ WT++I Y + G+ +A+A++ M + P S F ++L AC L
Sbjct: 108 PVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNL 167
Query: 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAAC 478
GR F T + + + ++D+ + ++ A + +MP E + W L+AA
Sbjct: 168 GR-QFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMP-ERDVISWTELIAAY 225
Query: 479 CLYSNMD 485
NM+
Sbjct: 226 ARVGNME 232
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,047,917
Number of Sequences: 539616
Number of extensions: 8622540
Number of successful extensions: 25601
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 17608
Number of HSP's gapped (non-prelim): 2372
length of query: 571
length of database: 191,569,459
effective HSP length: 123
effective length of query: 448
effective length of database: 125,196,691
effective search space: 56088117568
effective search space used: 56088117568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)