Query 008276
Match_columns 571
No_of_seqs 618 out of 3209
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 21:45:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 7.5E-79 1.6E-83 650.9 62.0 534 25-561 149-751 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2.8E-71 6.1E-76 578.8 52.8 496 60-561 83-588 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 8.1E-70 1.8E-74 581.4 57.2 507 26-537 84-625 (857)
4 PLN03218 maturation of RBCL 1; 100.0 9.3E-67 2E-71 546.5 58.2 511 22-538 364-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.3E-61 5.1E-66 505.9 54.9 470 59-535 365-880 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1E-59 2.2E-64 491.8 48.5 433 24-498 119-558 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.7E-31 5.9E-36 291.4 55.4 494 25-532 360-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.3E-31 1.4E-35 288.5 56.1 487 30-530 331-831 (899)
9 PRK11447 cellulose synthase su 99.9 4.6E-23 9.9E-28 226.8 51.0 491 31-530 115-739 (1157)
10 PRK11447 cellulose synthase su 99.9 3.2E-22 6.9E-27 220.2 55.4 490 31-531 31-700 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 5.3E-21 1.1E-25 201.1 50.1 476 42-532 58-707 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 3.1E-22 6.7E-27 187.1 34.8 442 32-520 52-508 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 9.5E-20 2.1E-24 188.5 45.3 416 98-531 130-571 (615)
14 KOG4626 O-linked N-acetylgluco 99.9 6.8E-21 1.5E-25 178.3 32.3 420 99-532 52-486 (966)
15 PRK09782 bacteriophage N4 rece 99.9 2E-18 4.3E-23 181.8 53.9 442 74-532 54-673 (987)
16 PRK11788 tetratricopeptide rep 99.9 1.8E-20 3.8E-25 184.4 32.1 282 265-550 70-367 (389)
17 TIGR00990 3a0801s09 mitochondr 99.9 3.8E-18 8.3E-23 176.6 45.4 425 32-503 131-577 (615)
18 PRK11788 tetratricopeptide rep 99.9 2.1E-19 4.6E-24 176.7 31.9 302 102-437 42-354 (389)
19 PRK15174 Vi polysaccharide exp 99.9 3.8E-18 8.2E-23 175.9 40.1 230 266-501 146-385 (656)
20 PRK10049 pgaA outer membrane p 99.9 5.2E-18 1.1E-22 178.7 41.2 406 63-531 14-456 (765)
21 PRK10049 pgaA outer membrane p 99.9 3.6E-18 7.7E-23 179.9 39.6 417 25-505 12-464 (765)
22 KOG2002 TPR-containing nuclear 99.9 1.2E-17 2.7E-22 164.8 38.9 503 23-531 159-745 (1018)
23 PRK15174 Vi polysaccharide exp 99.9 4.5E-18 9.8E-23 175.3 37.2 325 170-534 47-384 (656)
24 PRK14574 hmsH outer membrane p 99.8 3.3E-16 7.2E-21 161.8 46.1 445 34-505 40-521 (822)
25 KOG2002 TPR-containing nuclear 99.8 1.1E-15 2.4E-20 151.3 39.6 461 62-534 268-801 (1018)
26 PRK14574 hmsH outer membrane p 99.8 4E-15 8.7E-20 153.9 44.2 398 31-469 71-518 (822)
27 KOG4422 Uncharacterized conser 99.8 1.1E-14 2.4E-19 131.2 40.9 422 25-498 113-591 (625)
28 KOG4422 Uncharacterized conser 99.8 3.7E-14 8.1E-19 127.9 39.6 510 6-535 6-594 (625)
29 KOG2003 TPR repeat-containing 99.8 2.6E-16 5.5E-21 142.6 24.6 468 7-517 182-709 (840)
30 KOG0495 HAT repeat protein [RN 99.7 3.9E-12 8.5E-17 121.1 47.2 484 27-532 345-881 (913)
31 KOG2076 RNA polymerase III tra 99.7 4.2E-12 9E-17 125.5 47.4 492 33-528 144-731 (895)
32 KOG0547 Translocase of outer m 99.7 8.4E-14 1.8E-18 127.8 31.4 403 98-529 118-564 (606)
33 KOG2003 TPR repeat-containing 99.7 4.1E-14 8.9E-19 128.5 28.5 427 101-531 207-689 (840)
34 PF13429 TPR_15: Tetratricopep 99.7 9.6E-17 2.1E-21 149.3 11.1 257 269-529 13-275 (280)
35 KOG0495 HAT repeat protein [RN 99.7 1.3E-11 2.9E-16 117.5 42.6 487 22-532 310-847 (913)
36 KOG2076 RNA polymerase III tra 99.7 4.8E-13 1E-17 132.0 31.8 321 175-532 149-513 (895)
37 KOG1915 Cell cycle control pro 99.6 9.3E-11 2E-15 107.7 40.9 489 31-529 76-623 (677)
38 KOG1155 Anaphase-promoting com 99.6 1.3E-11 2.8E-16 113.0 33.3 257 270-530 233-494 (559)
39 KOG1126 DNA-binding cell divis 99.6 3.4E-13 7.4E-18 129.0 24.0 275 249-532 335-621 (638)
40 KOG1126 DNA-binding cell divis 99.6 1.2E-13 2.6E-18 132.0 20.0 247 279-531 334-586 (638)
41 KOG1155 Anaphase-promoting com 99.6 7.1E-11 1.5E-15 108.3 36.6 256 268-531 266-536 (559)
42 KOG1915 Cell cycle control pro 99.6 1.9E-10 4.2E-15 105.7 39.4 454 63-529 72-583 (677)
43 PRK10747 putative protoheme IX 99.6 8.5E-12 1.9E-16 121.5 33.0 219 271-496 160-389 (398)
44 PRK10747 putative protoheme IX 99.6 5.8E-12 1.2E-16 122.7 30.7 251 270-530 124-389 (398)
45 KOG0547 Translocase of outer m 99.6 8.1E-11 1.8E-15 108.6 35.3 224 272-499 334-568 (606)
46 KOG4318 Bicoid mRNA stability 99.6 1.4E-11 2.9E-16 121.4 31.5 422 92-535 22-598 (1088)
47 KOG1173 Anaphase-promoting com 99.6 3E-11 6.4E-16 113.6 32.3 476 34-529 22-516 (611)
48 TIGR00540 hemY_coli hemY prote 99.5 1.7E-11 3.8E-16 120.1 31.1 282 207-529 95-397 (409)
49 TIGR00540 hemY_coli hemY prote 99.5 3.5E-11 7.5E-16 118.0 33.1 286 176-497 95-399 (409)
50 PF13429 TPR_15: Tetratricopep 99.5 2.5E-14 5.5E-19 133.1 9.9 256 201-496 13-276 (280)
51 KOG2376 Signal recognition par 99.5 1.1E-09 2.4E-14 103.7 38.6 451 35-527 19-516 (652)
52 COG2956 Predicted N-acetylgluc 99.5 8.9E-11 1.9E-15 102.7 26.7 288 108-428 48-346 (389)
53 COG2956 Predicted N-acetylgluc 99.5 7.4E-11 1.6E-15 103.3 25.9 301 209-550 48-367 (389)
54 KOG2047 mRNA splicing factor [ 99.5 8.7E-09 1.9E-13 98.6 41.6 143 380-525 565-717 (835)
55 COG3071 HemY Uncharacterized e 99.5 2.7E-10 5.8E-15 103.0 29.2 296 98-427 85-388 (400)
56 TIGR02521 type_IV_pilW type IV 99.5 3.6E-11 7.8E-16 109.1 24.0 199 332-531 29-232 (234)
57 COG3071 HemY Uncharacterized e 99.5 3.3E-10 7.1E-15 102.4 28.9 278 208-495 96-388 (400)
58 KOG4318 Bicoid mRNA stability 99.4 3.8E-10 8.1E-15 111.5 31.2 499 20-534 17-811 (1088)
59 KOG4162 Predicted calmodulin-b 99.4 2.3E-09 5E-14 104.8 34.3 369 159-531 317-783 (799)
60 KOG1840 Kinesin light chain [C 99.4 3.9E-10 8.4E-15 109.4 28.3 236 265-529 200-477 (508)
61 KOG1174 Anaphase-promoting com 99.4 5.9E-09 1.3E-13 94.5 32.4 274 194-507 230-510 (564)
62 KOG3785 Uncharacterized conser 99.4 1.1E-08 2.3E-13 91.0 33.1 439 35-500 29-493 (557)
63 KOG2047 mRNA splicing factor [ 99.4 1.3E-07 2.7E-12 90.9 42.0 450 28-492 138-718 (835)
64 PRK12370 invasion protein regu 99.4 5.1E-10 1.1E-14 114.1 26.5 242 279-532 276-536 (553)
65 KOG1129 TPR repeat-containing 99.3 2.2E-10 4.8E-15 100.4 17.1 226 302-532 226-459 (478)
66 PF12569 NARP1: NMDA receptor- 99.3 1.9E-08 4.2E-13 99.1 32.5 427 69-527 9-516 (517)
67 TIGR02521 type_IV_pilW type IV 99.3 1.9E-09 4.1E-14 97.7 23.9 199 264-497 31-232 (234)
68 KOG1173 Anaphase-promoting com 99.3 3.8E-08 8.2E-13 93.1 31.8 280 197-514 245-535 (611)
69 PRK12370 invasion protein regu 99.3 1.1E-09 2.4E-14 111.6 23.4 210 313-530 275-501 (553)
70 KOG1129 TPR repeat-containing 99.3 1.9E-10 4.2E-15 100.7 14.6 231 268-503 227-464 (478)
71 KOG2376 Signal recognition par 99.3 1.1E-07 2.3E-12 90.6 33.6 411 102-531 19-487 (652)
72 COG3063 PilF Tfp pilus assembl 99.3 1.1E-09 2.3E-14 91.7 18.2 187 340-528 41-233 (250)
73 PF13041 PPR_2: PPR repeat fam 99.2 1.5E-11 3.2E-16 80.0 5.6 50 93-142 1-50 (50)
74 PF13041 PPR_2: PPR repeat fam 99.2 3.2E-11 6.9E-16 78.4 6.8 50 363-412 1-50 (50)
75 KOG3785 Uncharacterized conser 99.2 2.7E-07 5.8E-12 82.3 33.1 442 71-532 29-491 (557)
76 KOG1174 Anaphase-promoting com 99.2 7.2E-07 1.6E-11 81.3 35.9 262 263-532 231-501 (564)
77 PRK11189 lipoprotein NlpI; Pro 99.2 2.6E-09 5.7E-14 99.6 21.1 233 273-513 35-282 (296)
78 PRK11189 lipoprotein NlpI; Pro 99.2 1.2E-08 2.5E-13 95.3 24.4 212 313-533 40-267 (296)
79 KOG3616 Selective LIM binding 99.2 8.7E-08 1.9E-12 93.2 30.3 218 275-527 743-962 (1636)
80 KOG4162 Predicted calmodulin-b 99.2 4.8E-07 1E-11 89.1 35.5 420 59-503 318-789 (799)
81 KOG4340 Uncharacterized conser 99.2 8.5E-08 1.8E-12 83.4 26.6 354 168-531 47-443 (459)
82 KOG1156 N-terminal acetyltrans 99.2 2.2E-06 4.8E-11 82.8 38.3 195 39-238 52-259 (700)
83 PF12569 NARP1: NMDA receptor- 99.2 6.8E-08 1.5E-12 95.3 28.9 176 282-462 129-331 (517)
84 KOG1840 Kinesin light chain [C 99.2 1.5E-08 3.2E-13 98.6 23.5 253 164-496 198-478 (508)
85 KOG0624 dsRNA-activated protei 99.1 2.2E-07 4.8E-12 82.5 28.3 304 164-507 37-380 (504)
86 KOG1156 N-terminal acetyltrans 99.1 1.1E-06 2.5E-11 84.7 34.7 367 132-533 77-470 (700)
87 COG3063 PilF Tfp pilus assembl 99.1 5.2E-08 1.1E-12 81.9 21.8 193 308-503 44-242 (250)
88 KOG3617 WD40 and TPR repeat-co 99.1 3.9E-06 8.5E-11 83.2 36.3 340 38-426 738-1171(1416)
89 KOG1125 TPR repeat-containing 99.1 5.7E-09 1.2E-13 99.0 16.1 216 309-530 295-526 (579)
90 KOG0985 Vesicle coat protein c 99.1 1.6E-05 3.6E-10 80.7 40.7 156 348-526 1089-1244(1666)
91 KOG0985 Vesicle coat protein c 99.1 2.2E-05 4.8E-10 79.8 41.2 453 28-529 838-1368(1666)
92 PF04733 Coatomer_E: Coatomer 99.0 4.5E-09 9.7E-14 96.4 14.0 150 344-500 112-268 (290)
93 KOG0548 Molecular co-chaperone 99.0 1.1E-06 2.4E-11 83.1 28.6 437 33-514 7-472 (539)
94 PF04733 Coatomer_E: Coatomer 99.0 4.5E-08 9.8E-13 89.9 18.4 244 274-532 11-266 (290)
95 KOG3616 Selective LIM binding 99.0 9E-06 1.9E-10 79.7 33.8 248 249-530 748-1023(1636)
96 cd05804 StaR_like StaR_like; a 99.0 6E-06 1.3E-10 80.2 33.1 259 272-532 51-337 (355)
97 KOG0548 Molecular co-chaperone 99.0 1.5E-06 3.2E-11 82.3 27.0 217 302-532 227-456 (539)
98 KOG1127 TPR repeat-containing 98.9 1.3E-06 2.9E-11 88.3 27.9 130 400-530 967-1103(1238)
99 PRK04841 transcriptional regul 98.9 9E-05 2E-09 81.7 45.1 263 270-532 458-761 (903)
100 KOG4340 Uncharacterized conser 98.9 5.7E-07 1.2E-11 78.4 21.3 154 67-225 13-173 (459)
101 PRK10370 formate-dependent nit 98.9 2.7E-07 5.8E-12 80.0 18.6 118 413-532 52-174 (198)
102 TIGR03302 OM_YfiO outer membra 98.9 2.8E-07 6E-12 83.5 19.7 181 332-531 31-232 (235)
103 KOG1127 TPR repeat-containing 98.9 5E-06 1.1E-10 84.3 28.7 457 58-529 485-994 (1238)
104 KOG3617 WD40 and TPR repeat-co 98.9 3.8E-05 8.2E-10 76.5 33.9 259 62-361 724-994 (1416)
105 PRK15359 type III secretion sy 98.8 1.5E-07 3.2E-12 77.2 14.0 123 385-513 13-137 (144)
106 KOG0624 dsRNA-activated protei 98.8 1.3E-05 2.9E-10 71.5 26.5 256 271-532 79-371 (504)
107 PRK04841 transcriptional regul 98.8 3.3E-05 7.3E-10 85.1 35.0 325 75-429 385-760 (903)
108 PRK15359 type III secretion sy 98.8 2.7E-07 5.8E-12 75.7 13.6 107 421-532 14-122 (144)
109 cd05804 StaR_like StaR_like; a 98.8 3E-05 6.6E-10 75.2 30.5 266 264-531 6-293 (355)
110 KOG1070 rRNA processing protei 98.7 1.7E-06 3.7E-11 90.5 21.3 228 299-527 1458-1696(1710)
111 KOG1128 Uncharacterized conser 98.7 9E-07 1.9E-11 86.7 17.3 212 303-532 402-617 (777)
112 PLN02789 farnesyltranstransfer 98.7 1E-05 2.2E-10 75.5 23.6 177 349-529 87-300 (320)
113 COG5010 TadD Flp pilus assembl 98.7 3.3E-06 7.1E-11 72.9 18.4 155 369-526 70-226 (257)
114 KOG1914 mRNA cleavage and poly 98.7 0.00044 9.6E-09 66.0 34.9 161 366-529 367-537 (656)
115 PRK15179 Vi polysaccharide bio 98.6 4.8E-06 1E-10 85.7 21.5 160 364-533 85-247 (694)
116 PRK10370 formate-dependent nit 98.6 4.6E-06 1E-10 72.4 18.4 157 341-508 23-184 (198)
117 KOG1070 rRNA processing protei 98.6 1E-05 2.2E-10 84.9 23.6 199 332-534 1456-1666(1710)
118 KOG2053 Mitochondrial inherita 98.6 0.00086 1.9E-08 68.1 38.4 66 470-535 438-506 (932)
119 KOG1128 Uncharacterized conser 98.6 2.3E-06 4.9E-11 84.0 16.6 189 329-532 393-583 (777)
120 KOG1125 TPR repeat-containing 98.6 5.5E-06 1.2E-10 79.2 18.2 251 271-525 292-565 (579)
121 COG5010 TadD Flp pilus assembl 98.6 7.2E-06 1.6E-10 70.8 17.0 135 396-532 62-198 (257)
122 PRK15363 pathogenicity island 98.6 9.2E-07 2E-11 71.0 10.8 97 436-532 35-133 (157)
123 COG4783 Putative Zn-dependent 98.5 1.5E-05 3.2E-10 75.0 19.8 116 411-528 317-434 (484)
124 TIGR03302 OM_YfiO outer membra 98.5 8.5E-06 1.9E-10 73.8 18.1 183 296-499 30-234 (235)
125 KOG1914 mRNA cleavage and poly 98.5 0.001 2.2E-08 63.6 36.6 389 61-462 17-498 (656)
126 PF12854 PPR_1: PPR repeat 98.5 1.7E-07 3.7E-12 54.4 4.0 32 160-191 2-33 (34)
127 PF12854 PPR_1: PPR repeat 98.5 1.5E-07 3.2E-12 54.7 3.7 34 58-91 1-34 (34)
128 KOG3081 Vesicle coat complex C 98.5 2.8E-05 6.1E-10 67.2 18.8 150 372-531 115-271 (299)
129 PLN02789 farnesyltranstransfer 98.5 0.00014 3E-09 68.0 25.1 236 266-507 39-312 (320)
130 PRK14720 transcript cleavage f 98.5 2.5E-05 5.4E-10 81.3 21.5 229 262-513 29-268 (906)
131 TIGR02552 LcrH_SycD type III s 98.5 3E-06 6.5E-11 69.1 11.9 98 403-502 20-119 (135)
132 KOG3060 Uncharacterized conser 98.4 2.7E-05 5.9E-10 66.8 17.1 184 346-533 24-222 (289)
133 COG4783 Putative Zn-dependent 98.4 0.0002 4.3E-09 67.7 24.1 136 374-531 315-454 (484)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 8.3E-06 1.8E-10 77.6 14.8 124 401-529 170-295 (395)
135 PRK15179 Vi polysaccharide bio 98.4 0.00011 2.4E-09 75.8 23.4 142 330-475 82-229 (694)
136 KOG3060 Uncharacterized conser 98.4 9.7E-05 2.1E-09 63.5 18.4 202 310-514 23-237 (289)
137 KOG3081 Vesicle coat complex C 98.4 0.00023 5.1E-09 61.7 20.7 155 341-502 115-276 (299)
138 TIGR02552 LcrH_SycD type III s 98.3 2E-05 4.4E-10 64.2 14.1 98 435-532 16-115 (135)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.1E-05 1.1E-09 72.3 16.1 129 335-466 170-298 (395)
140 PRK14720 transcript cleavage f 98.2 0.00044 9.6E-09 72.3 24.0 237 93-411 29-268 (906)
141 PF09976 TPR_21: Tetratricopep 98.2 5.4E-05 1.2E-09 62.3 14.3 123 403-527 15-143 (145)
142 PF12895 Apc3: Anaphase-promot 98.2 3.1E-06 6.8E-11 62.1 5.2 78 449-527 2-83 (84)
143 TIGR02795 tol_pal_ybgF tol-pal 98.1 4.3E-05 9.2E-10 60.6 11.7 92 440-531 6-105 (119)
144 TIGR00756 PPR pentatricopeptid 98.1 6.2E-06 1.4E-10 48.7 4.5 34 97-130 2-35 (35)
145 cd00189 TPR Tetratricopeptide 98.1 4.7E-05 1E-09 57.4 10.7 93 439-531 3-97 (100)
146 PF09976 TPR_21: Tetratricopep 98.1 0.00033 7.1E-09 57.7 15.9 124 368-494 15-144 (145)
147 KOG0550 Molecular chaperone (D 98.1 0.00023 4.9E-09 65.6 15.7 255 270-532 55-351 (486)
148 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00011 2.5E-09 58.2 12.7 105 402-506 4-114 (119)
149 PF13414 TPR_11: TPR repeat; P 98.1 1.7E-05 3.6E-10 55.7 6.9 65 467-531 2-67 (69)
150 COG3898 Uncharacterized membra 98.0 0.011 2.3E-07 54.6 27.8 258 274-547 130-407 (531)
151 KOG0553 TPR repeat-containing 98.0 5.5E-05 1.2E-09 66.9 10.8 91 375-470 91-184 (304)
152 KOG2053 Mitochondrial inherita 98.0 0.023 5E-07 58.2 37.8 159 368-529 439-606 (932)
153 COG4235 Cytochrome c biogenesi 98.0 9.7E-05 2.1E-09 65.8 12.1 108 433-540 153-265 (287)
154 PLN03088 SGT1, suppressor of 98.0 6.6E-05 1.4E-09 71.9 12.0 108 406-515 8-117 (356)
155 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.3E-10 47.3 4.3 33 96-128 2-34 (34)
156 PF13432 TPR_16: Tetratricopep 98.0 2.2E-05 4.7E-10 54.4 6.2 59 474-532 3-61 (65)
157 TIGR00756 PPR pentatricopeptid 98.0 1.3E-05 2.8E-10 47.3 4.4 33 367-399 2-34 (35)
158 PF13812 PPR_3: Pentatricopept 98.0 1.3E-05 2.8E-10 47.0 4.2 33 197-229 2-34 (34)
159 PLN03088 SGT1, suppressor of 98.0 0.00016 3.5E-09 69.2 13.8 101 371-475 8-110 (356)
160 KOG0553 TPR repeat-containing 98.0 3E-05 6.5E-10 68.5 7.9 110 408-519 89-200 (304)
161 COG4700 Uncharacterized protei 97.9 0.0013 2.7E-08 53.9 16.1 132 396-529 85-220 (251)
162 PRK02603 photosystem I assembl 97.9 0.00016 3.5E-09 61.6 12.1 95 437-531 36-149 (172)
163 PF07079 DUF1347: Protein of u 97.9 0.019 4E-07 54.2 34.6 141 36-177 14-179 (549)
164 PRK15331 chaperone protein Sic 97.9 0.00014 3E-09 58.9 10.6 92 439-530 40-133 (165)
165 PRK02603 photosystem I assembl 97.9 0.00054 1.2E-08 58.3 14.3 131 364-517 34-166 (172)
166 PRK10153 DNA-binding transcrip 97.9 0.00075 1.6E-08 67.6 17.2 139 363-503 335-488 (517)
167 PF05843 Suf: Suppressor of fo 97.9 0.0007 1.5E-08 62.5 15.9 135 366-503 2-142 (280)
168 CHL00033 ycf3 photosystem I as 97.9 0.00023 4.9E-09 60.5 11.4 94 435-528 34-139 (168)
169 PF13432 TPR_16: Tetratricopep 97.8 7.8E-05 1.7E-09 51.5 6.4 61 442-502 3-65 (65)
170 PF14559 TPR_19: Tetratricopep 97.8 4.4E-05 9.5E-10 53.4 5.2 54 479-532 2-55 (68)
171 PF12895 Apc3: Anaphase-promot 97.8 9.8E-05 2.1E-09 54.1 6.7 79 379-460 3-82 (84)
172 cd00189 TPR Tetratricopeptide 97.7 0.00043 9.3E-09 52.0 10.5 92 406-499 6-99 (100)
173 KOG1538 Uncharacterized conser 97.7 0.011 2.3E-07 58.1 21.4 86 401-496 748-845 (1081)
174 PF13371 TPR_9: Tetratricopept 97.7 0.00015 3.2E-09 51.5 6.9 57 476-532 3-59 (73)
175 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.046 1E-06 51.6 31.2 428 49-501 30-535 (660)
176 KOG2041 WD40 repeat protein [G 97.7 0.06 1.3E-06 53.7 25.3 59 368-426 1024-1083(1189)
177 PF10037 MRP-S27: Mitochondria 97.7 0.00061 1.3E-08 65.4 11.8 121 58-178 60-186 (429)
178 PF01535 PPR: PPR repeat; Int 97.6 7.3E-05 1.6E-09 42.6 3.4 29 97-125 2-30 (31)
179 PRK15363 pathogenicity island 97.6 0.0042 9.1E-08 50.3 14.3 94 403-498 38-133 (157)
180 PF12688 TPR_5: Tetratrico pep 97.6 0.0013 2.9E-08 51.2 11.0 87 442-528 7-101 (120)
181 PF08579 RPM2: Mitochondrial r 97.6 0.00084 1.8E-08 50.2 9.2 81 97-177 27-116 (120)
182 PF01535 PPR: PPR repeat; Int 97.6 8.6E-05 1.9E-09 42.2 3.2 31 197-227 1-31 (31)
183 PF14938 SNAP: Soluble NSF att 97.6 0.024 5.1E-07 52.7 21.0 162 171-372 100-275 (282)
184 PF14559 TPR_19: Tetratricopep 97.6 9.5E-05 2.1E-09 51.6 3.8 54 412-467 3-57 (68)
185 PRK10153 DNA-binding transcrip 97.5 0.0056 1.2E-07 61.5 17.3 134 395-532 332-483 (517)
186 PF08579 RPM2: Mitochondrial r 97.5 0.0016 3.6E-08 48.7 10.0 81 266-346 27-116 (120)
187 PF13414 TPR_11: TPR repeat; P 97.5 0.00023 5E-09 49.8 5.3 65 435-499 2-69 (69)
188 PRK10866 outer membrane biogen 97.5 0.068 1.5E-06 48.1 23.2 68 263-330 31-100 (243)
189 CHL00033 ycf3 photosystem I as 97.5 0.0022 4.8E-08 54.3 12.2 62 367-428 37-100 (168)
190 PF06239 ECSIT: Evolutionarily 97.5 0.0016 3.5E-08 55.2 10.9 112 186-314 35-153 (228)
191 PF05843 Suf: Suppressor of fo 97.5 0.0014 3E-08 60.6 11.6 129 401-531 2-136 (280)
192 KOG1130 Predicted G-alpha GTPa 97.5 0.0014 2.9E-08 60.6 11.0 258 272-530 25-343 (639)
193 PRK10866 outer membrane biogen 97.5 0.016 3.4E-07 52.2 17.9 171 340-529 38-239 (243)
194 KOG2280 Vacuolar assembly/sort 97.4 0.18 3.8E-06 51.0 28.0 110 401-526 685-794 (829)
195 COG4700 Uncharacterized protei 97.4 0.021 4.5E-07 47.1 15.8 134 363-496 87-221 (251)
196 PF13431 TPR_17: Tetratricopep 97.4 0.00016 3.4E-09 41.9 2.7 32 491-522 2-33 (34)
197 KOG1130 Predicted G-alpha GTPa 97.4 0.002 4.4E-08 59.5 11.0 129 300-428 196-343 (639)
198 PF10037 MRP-S27: Mitochondria 97.4 0.0038 8.3E-08 60.1 13.5 117 296-412 63-185 (429)
199 PF13281 DUF4071: Domain of un 97.4 0.065 1.4E-06 50.7 21.0 160 339-501 146-338 (374)
200 PRK10803 tol-pal system protei 97.4 0.0019 4.1E-08 58.5 10.7 101 402-502 145-251 (263)
201 PF14938 SNAP: Soluble NSF att 97.3 0.0054 1.2E-07 57.0 13.6 94 438-531 116-225 (282)
202 PF13428 TPR_14: Tetratricopep 97.3 0.00062 1.4E-08 42.4 4.6 42 469-510 2-43 (44)
203 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0016 3.4E-08 62.1 9.1 97 435-534 74-177 (453)
204 PF13371 TPR_9: Tetratricopept 97.3 0.0013 2.9E-08 46.6 6.8 65 444-508 3-69 (73)
205 PRK10803 tol-pal system protei 97.2 0.009 1.9E-07 54.2 13.5 93 439-531 146-246 (263)
206 PF04840 Vps16_C: Vps16, C-ter 97.2 0.18 3.9E-06 47.3 28.4 76 344-425 187-262 (319)
207 PF12688 TPR_5: Tetratrico pep 97.2 0.013 2.9E-07 45.6 12.0 107 269-375 6-116 (120)
208 PF06239 ECSIT: Evolutionarily 97.2 0.0036 7.7E-08 53.2 9.2 36 145-180 118-153 (228)
209 PF04840 Vps16_C: Vps16, C-ter 97.1 0.24 5.1E-06 46.5 27.0 105 303-423 181-285 (319)
210 KOG1538 Uncharacterized conser 97.1 0.048 1E-06 53.8 17.4 114 271-393 710-845 (1081)
211 KOG2796 Uncharacterized conser 97.1 0.032 6.9E-07 48.7 14.6 134 368-501 180-319 (366)
212 COG4235 Cytochrome c biogenesi 97.1 0.028 6.2E-07 50.5 14.8 105 397-503 153-262 (287)
213 PF03704 BTAD: Bacterial trans 97.1 0.0023 5E-08 52.8 7.6 69 470-538 64-137 (146)
214 KOG1258 mRNA processing protei 97.1 0.37 7.9E-06 47.7 28.7 181 333-516 296-489 (577)
215 KOG2041 WD40 repeat protein [G 97.0 0.43 9.2E-06 48.0 27.2 129 80-221 679-821 (1189)
216 PF13525 YfiO: Outer membrane 97.0 0.13 2.8E-06 45.0 18.4 50 474-523 147-199 (203)
217 PF13424 TPR_12: Tetratricopep 97.0 0.0016 3.6E-08 46.8 5.3 62 469-530 6-74 (78)
218 KOG0543 FKBP-type peptidyl-pro 96.9 0.02 4.3E-07 53.5 12.8 95 437-531 258-355 (397)
219 PF13512 TPR_18: Tetratricopep 96.9 0.036 7.8E-07 44.1 12.2 89 443-531 17-128 (142)
220 PF13525 YfiO: Outer membrane 96.9 0.21 4.5E-06 43.8 18.5 182 265-455 6-197 (203)
221 PF09205 DUF1955: Domain of un 96.8 0.068 1.5E-06 41.4 12.6 140 376-534 13-152 (161)
222 KOG2796 Uncharacterized conser 96.6 0.43 9.3E-06 42.0 20.7 137 266-404 179-323 (366)
223 KOG0550 Molecular chaperone (D 96.6 0.63 1.4E-05 43.9 23.8 151 272-429 177-350 (486)
224 PF13424 TPR_12: Tetratricopep 96.6 0.0042 9.2E-08 44.6 5.0 60 438-497 7-75 (78)
225 PF12921 ATP13: Mitochondrial 96.6 0.037 7.9E-07 43.7 10.2 53 394-446 46-98 (126)
226 PF07079 DUF1347: Protein of u 96.6 0.74 1.6E-05 44.0 32.5 96 42-141 59-178 (549)
227 PRK11906 transcriptional regul 96.6 0.056 1.2E-06 52.0 13.2 142 381-525 274-430 (458)
228 KOG2066 Vacuolar assembly/sort 96.6 0.94 2E-05 46.4 21.8 73 404-488 638-710 (846)
229 COG1729 Uncharacterized protei 96.5 0.025 5.4E-07 50.1 9.7 102 402-504 144-251 (262)
230 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.87 1.9E-05 43.5 30.7 128 402-530 399-530 (660)
231 COG3118 Thioredoxin domain-con 96.4 0.22 4.8E-06 44.8 15.0 119 410-531 144-265 (304)
232 PF13281 DUF4071: Domain of un 96.4 0.57 1.2E-05 44.5 18.5 164 367-531 143-334 (374)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.031 6.8E-07 53.5 10.0 61 399-462 74-138 (453)
234 PF10300 DUF3808: Protein of u 96.3 0.35 7.6E-06 48.4 17.6 158 370-530 193-375 (468)
235 COG3118 Thioredoxin domain-con 96.2 0.51 1.1E-05 42.6 16.2 172 352-525 121-295 (304)
236 KOG1258 mRNA processing protei 96.2 1.5 3.3E-05 43.6 27.2 91 31-123 82-179 (577)
237 KOG1941 Acetylcholine receptor 96.1 0.17 3.7E-06 46.5 13.0 48 274-321 16-65 (518)
238 KOG3941 Intermediate in Toll s 96.1 0.1 2.2E-06 46.2 11.2 126 184-326 53-186 (406)
239 KOG4555 TPR repeat-containing 96.1 0.039 8.4E-07 42.6 7.6 88 410-499 53-146 (175)
240 COG1729 Uncharacterized protei 96.0 0.17 3.6E-06 45.1 12.4 94 368-462 145-241 (262)
241 KOG4234 TPR repeat-containing 96.0 0.029 6.2E-07 46.9 7.0 103 408-512 103-212 (271)
242 KOG0543 FKBP-type peptidyl-pro 96.0 0.032 6.9E-07 52.2 7.9 65 468-532 257-321 (397)
243 PF03704 BTAD: Bacterial trans 96.0 0.14 2.9E-06 42.2 11.2 53 442-494 68-122 (146)
244 KOG1585 Protein required for f 95.9 1 2.2E-05 39.3 16.0 86 439-525 153-250 (308)
245 COG0457 NrfG FOG: TPR repeat [ 95.9 1.2 2.6E-05 39.7 27.6 191 337-529 62-263 (291)
246 PRK11906 transcriptional regul 95.8 0.55 1.2E-05 45.5 15.5 140 349-493 273-432 (458)
247 KOG2610 Uncharacterized conser 95.7 0.38 8.3E-06 43.9 13.1 160 378-540 116-285 (491)
248 PF13512 TPR_18: Tetratricopep 95.6 0.56 1.2E-05 37.5 12.3 114 372-503 17-134 (142)
249 PF02259 FAT: FAT domain; Int 95.6 2.4 5.3E-05 40.9 22.5 150 363-515 144-305 (352)
250 COG4105 ComL DNA uptake lipopr 95.5 1.6 3.5E-05 38.7 20.6 58 474-531 173-233 (254)
251 PF12921 ATP13: Mitochondrial 95.5 0.21 4.6E-06 39.4 10.0 78 401-478 3-98 (126)
252 smart00299 CLH Clathrin heavy 95.5 1 2.2E-05 36.6 14.6 127 368-514 10-137 (140)
253 PF04053 Coatomer_WDAD: Coatom 95.5 0.42 9.2E-06 47.1 14.1 156 102-322 268-425 (443)
254 PF04184 ST7: ST7 protein; In 95.5 0.68 1.5E-05 45.0 14.7 58 472-529 263-322 (539)
255 COG3898 Uncharacterized membra 95.5 2.3 5E-05 40.0 29.5 278 41-327 97-391 (531)
256 PRK11619 lytic murein transgly 95.4 4.1 8.9E-05 42.6 33.3 52 261-313 126-177 (644)
257 COG4105 ComL DNA uptake lipopr 95.4 1.8 3.9E-05 38.4 16.0 139 374-537 43-201 (254)
258 KOG2610 Uncharacterized conser 95.3 0.23 4.9E-06 45.3 10.5 116 411-528 114-235 (491)
259 PF00515 TPR_1: Tetratricopept 95.3 0.041 8.8E-07 31.7 4.2 32 469-500 2-33 (34)
260 COG0457 NrfG FOG: TPR repeat [ 95.3 1.9 4.2E-05 38.3 26.2 219 278-500 37-268 (291)
261 PF07719 TPR_2: Tetratricopept 95.3 0.058 1.3E-06 31.0 4.8 32 470-501 3-34 (34)
262 PRK15331 chaperone protein Sic 95.3 0.53 1.2E-05 38.6 11.6 88 407-496 44-133 (165)
263 KOG2280 Vacuolar assembly/sort 95.2 4.2 9.2E-05 41.7 29.5 124 99-224 441-574 (829)
264 PF04184 ST7: ST7 protein; In 95.1 3 6.5E-05 40.8 17.5 58 369-426 263-321 (539)
265 smart00299 CLH Clathrin heavy 95.0 1.6 3.5E-05 35.4 15.2 89 28-121 7-95 (140)
266 KOG2114 Vacuolar assembly/sort 94.9 1.6 3.4E-05 45.2 16.1 138 342-493 376-515 (933)
267 PF08631 SPO22: Meiosis protei 94.9 3.2 7E-05 38.4 24.6 19 207-225 4-22 (278)
268 KOG3941 Intermediate in Toll s 94.8 0.24 5.1E-06 44.0 8.9 110 83-192 53-186 (406)
269 KOG4555 TPR repeat-containing 94.8 0.36 7.7E-06 37.5 8.7 88 374-462 52-141 (175)
270 PF10300 DUF3808: Protein of u 94.6 1.3 2.8E-05 44.4 15.0 158 303-462 192-373 (468)
271 KOG0890 Protein kinase of the 94.5 13 0.00029 43.8 25.9 311 170-533 1388-1733(2382)
272 PF09205 DUF1955: Domain of un 94.3 0.68 1.5E-05 36.1 9.2 62 267-329 89-150 (161)
273 COG3629 DnrI DNA-binding trans 94.2 0.29 6.2E-06 44.4 8.4 59 471-529 156-214 (280)
274 COG4649 Uncharacterized protei 94.2 1.9 4.1E-05 35.6 12.0 129 366-496 60-195 (221)
275 COG4785 NlpI Lipoprotein NlpI, 94.2 3.4 7.3E-05 35.6 14.7 159 365-531 99-266 (297)
276 PF04053 Coatomer_WDAD: Coatom 93.9 2.2 4.8E-05 42.2 14.6 161 272-463 269-429 (443)
277 KOG1920 IkappaB kinase complex 93.7 13 0.00028 40.7 22.3 139 339-495 913-1053(1265)
278 PF13176 TPR_7: Tetratricopept 93.5 0.17 3.7E-06 29.6 3.9 26 504-529 1-26 (36)
279 KOG1941 Acetylcholine receptor 93.3 7 0.00015 36.5 18.4 125 338-462 126-272 (518)
280 PF13176 TPR_7: Tetratricopept 93.2 0.19 4E-06 29.4 3.8 28 470-497 1-28 (36)
281 PF13170 DUF4003: Protein of u 93.2 2.5 5.5E-05 39.3 13.0 94 350-446 119-227 (297)
282 PF13181 TPR_8: Tetratricopept 93.2 0.21 4.5E-06 28.6 4.0 31 470-500 3-33 (34)
283 PRK09687 putative lyase; Provi 93.1 7.3 0.00016 36.0 26.3 75 261-344 203-277 (280)
284 KOG4234 TPR repeat-containing 93.1 2.3 4.9E-05 36.0 11.0 89 374-466 104-199 (271)
285 PF02259 FAT: FAT domain; Int 93.0 5.7 0.00012 38.3 16.2 69 466-534 144-216 (352)
286 PF09613 HrpB1_HrpK: Bacterial 92.9 0.94 2E-05 37.1 8.5 95 437-532 8-107 (160)
287 PF08631 SPO22: Meiosis protei 92.8 8.1 0.00017 35.8 23.5 18 275-292 4-21 (278)
288 TIGR02561 HrpB1_HrpK type III 92.7 0.89 1.9E-05 36.5 7.9 84 448-532 22-107 (153)
289 PF13428 TPR_14: Tetratricopep 92.7 0.26 5.6E-06 30.4 4.1 31 502-532 1-31 (44)
290 KOG4570 Uncharacterized conser 92.6 0.52 1.1E-05 42.7 7.2 102 57-160 57-165 (418)
291 PF10602 RPN7: 26S proteasome 92.1 2.5 5.5E-05 35.9 10.7 96 367-462 38-139 (177)
292 KOG2114 Vacuolar assembly/sort 92.1 18 0.00038 38.1 29.6 144 69-219 339-486 (933)
293 PRK15180 Vi polysaccharide bio 91.7 3 6.4E-05 40.4 11.4 127 375-505 299-428 (831)
294 KOG4648 Uncharacterized conser 91.7 0.49 1.1E-05 43.3 6.1 100 406-508 103-205 (536)
295 COG2976 Uncharacterized protei 91.7 7.5 0.00016 33.0 12.4 87 408-498 97-189 (207)
296 PF07035 Mic1: Colon cancer-as 91.3 7.6 0.00017 32.3 14.4 134 385-531 14-149 (167)
297 PF07719 TPR_2: Tetratricopept 91.2 0.47 1E-05 27.0 3.8 29 503-531 2-30 (34)
298 PF09613 HrpB1_HrpK: Bacterial 90.4 4.1 8.8E-05 33.5 9.6 83 401-485 8-95 (160)
299 PF00515 TPR_1: Tetratricopept 90.4 0.68 1.5E-05 26.4 4.0 27 367-393 3-29 (34)
300 PF13174 TPR_6: Tetratricopept 90.3 0.67 1.4E-05 26.1 4.0 24 476-499 8-31 (33)
301 PF10602 RPN7: 26S proteasome 90.1 3.4 7.4E-05 35.1 9.6 63 265-327 37-101 (177)
302 KOG1920 IkappaB kinase complex 90.1 34 0.00073 37.7 22.4 80 271-361 972-1053(1265)
303 PF07721 TPR_4: Tetratricopept 89.9 0.53 1.1E-05 25.0 3.0 24 503-526 2-25 (26)
304 KOG1586 Protein required for f 89.7 13 0.00029 32.5 16.3 20 479-498 165-184 (288)
305 PF13374 TPR_10: Tetratricopep 89.7 0.86 1.9E-05 27.4 4.3 27 470-496 4-30 (42)
306 KOG4648 Uncharacterized conser 89.3 1.4 3E-05 40.5 6.8 93 372-468 104-198 (536)
307 PF11207 DUF2989: Protein of u 89.2 9 0.0002 32.8 11.1 76 447-522 117-198 (203)
308 COG4649 Uncharacterized protei 89.2 12 0.00025 31.2 15.6 126 335-462 60-193 (221)
309 PF06552 TOM20_plant: Plant sp 89.2 5.7 0.00012 33.2 9.7 66 463-535 63-140 (186)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 89.1 3.3 7.2E-05 30.4 7.2 63 380-444 22-84 (103)
311 KOG1585 Protein required for f 89.1 15 0.00034 32.4 17.4 89 371-460 156-251 (308)
312 KOG1464 COP9 signalosome, subu 88.8 17 0.00037 32.5 14.8 260 225-492 20-327 (440)
313 COG2976 Uncharacterized protei 88.7 14 0.00031 31.4 14.4 91 441-532 94-189 (207)
314 PF13174 TPR_6: Tetratricopept 88.3 0.79 1.7E-05 25.8 3.2 29 504-532 2-30 (33)
315 PRK15180 Vi polysaccharide bio 88.3 4 8.6E-05 39.5 9.3 151 343-496 298-453 (831)
316 PF07035 Mic1: Colon cancer-as 88.2 14 0.0003 30.8 14.5 134 151-327 15-148 (167)
317 PF02284 COX5A: Cytochrome c o 88.2 4.2 9.2E-05 30.2 7.3 61 382-444 27-87 (108)
318 COG3629 DnrI DNA-binding trans 88.2 5 0.00011 36.6 9.6 62 366-428 154-215 (280)
319 PF04097 Nic96: Nup93/Nic96; 87.9 38 0.00083 35.5 24.4 88 203-293 265-356 (613)
320 PF13181 TPR_8: Tetratricopept 87.7 1.4 3.1E-05 25.0 4.1 29 503-531 2-30 (34)
321 PF13374 TPR_10: Tetratricopep 87.6 1.2 2.6E-05 26.7 4.0 28 503-530 3-30 (42)
322 KOG4279 Serine/threonine prote 87.5 20 0.00042 37.2 13.8 185 265-501 202-399 (1226)
323 COG1747 Uncharacterized N-term 87.3 33 0.00071 34.0 22.3 92 298-393 65-159 (711)
324 PRK11619 lytic murein transgly 87.1 43 0.00094 35.3 37.4 94 443-536 414-510 (644)
325 TIGR03504 FimV_Cterm FimV C-te 87.0 1.4 3E-05 27.1 3.7 27 506-532 3-29 (44)
326 PF14853 Fis1_TPR_C: Fis1 C-te 87.0 1.6 3.6E-05 28.1 4.3 35 473-507 6-40 (53)
327 PF10345 Cohesin_load: Cohesin 87.0 44 0.00095 35.2 29.1 50 274-323 371-428 (608)
328 COG4455 ImpE Protein of avirul 86.8 2.6 5.7E-05 36.3 6.5 62 440-501 5-68 (273)
329 PF13431 TPR_17: Tetratricopep 86.4 0.99 2.1E-05 25.9 2.8 21 435-455 12-32 (34)
330 COG3947 Response regulator con 86.2 3.3 7.2E-05 37.3 7.1 60 471-530 282-341 (361)
331 PF14561 TPR_20: Tetratricopep 86.1 3.8 8.3E-05 30.1 6.5 51 467-517 21-73 (90)
332 KOG1550 Extracellular protein 86.0 43 0.00093 34.7 16.3 151 377-534 261-429 (552)
333 KOG0276 Vesicle coat complex C 86.0 23 0.00049 35.8 13.1 25 438-462 668-692 (794)
334 PF00637 Clathrin: Region in C 85.9 0.5 1.1E-05 38.6 1.9 86 135-223 12-97 (143)
335 TIGR02508 type_III_yscG type I 85.8 12 0.00027 27.7 9.3 87 144-234 19-105 (115)
336 PRK10941 hypothetical protein; 85.7 5.8 0.00012 36.3 8.7 62 471-532 184-245 (269)
337 KOG0545 Aryl-hydrocarbon recep 85.5 5.7 0.00012 34.9 7.9 57 477-533 239-295 (329)
338 KOG1464 COP9 signalosome, subu 85.2 28 0.0006 31.3 19.2 126 263-388 104-254 (440)
339 PF06552 TOM20_plant: Plant sp 85.0 2.4 5.1E-05 35.4 5.3 48 484-531 51-109 (186)
340 PF04097 Nic96: Nup93/Nic96; 84.6 56 0.0012 34.3 23.9 86 271-361 265-354 (613)
341 PF13762 MNE1: Mitochondrial s 84.6 15 0.00032 29.8 9.5 78 66-143 41-128 (145)
342 smart00028 TPR Tetratricopepti 84.5 2.3 5E-05 23.0 4.0 27 473-499 6-32 (34)
343 COG4455 ImpE Protein of avirul 84.5 27 0.00058 30.4 11.8 59 368-427 4-62 (273)
344 KOG0890 Protein kinase of the 84.4 1E+02 0.0022 37.1 24.9 162 32-202 1387-1552(2382)
345 KOG4570 Uncharacterized conser 84.3 11 0.00024 34.5 9.5 100 329-429 59-164 (418)
346 PF00637 Clathrin: Region in C 84.2 0.73 1.6E-05 37.6 2.2 90 29-122 8-97 (143)
347 TIGR03504 FimV_Cterm FimV C-te 84.1 2.4 5.2E-05 26.1 3.8 27 201-227 4-30 (44)
348 PF10345 Cohesin_load: Cohesin 83.8 62 0.0013 34.1 35.4 49 481-529 547-604 (608)
349 KOG4642 Chaperone-dependent E3 83.5 4.8 0.0001 35.3 6.7 115 409-526 19-141 (284)
350 PF02284 COX5A: Cytochrome c o 83.4 10 0.00022 28.3 7.3 49 461-509 38-86 (108)
351 cd00923 Cyt_c_Oxidase_Va Cytoc 83.2 9.9 0.00022 28.0 7.1 47 462-508 36-82 (103)
352 PF11207 DUF2989: Protein of u 82.9 22 0.00049 30.5 10.3 73 382-455 123-197 (203)
353 PRK09687 putative lyase; Provi 82.6 41 0.00088 31.2 28.2 75 362-446 203-277 (280)
354 KOG1308 Hsp70-interacting prot 82.5 1 2.2E-05 41.5 2.5 117 411-530 125-243 (377)
355 TIGR02561 HrpB1_HrpK type III 82.0 26 0.00056 28.5 13.3 49 412-462 22-70 (153)
356 COG2909 MalT ATP-dependent tra 81.7 79 0.0017 33.9 27.0 55 473-527 623-684 (894)
357 PF09986 DUF2225: Uncharacteri 81.1 13 0.00028 32.7 8.8 64 471-534 121-197 (214)
358 COG1747 Uncharacterized N-term 80.9 63 0.0014 32.2 23.8 175 263-446 65-249 (711)
359 PF13170 DUF4003: Protein of u 80.5 50 0.0011 30.8 18.7 146 381-528 78-243 (297)
360 smart00386 HAT HAT (Half-A-TPR 79.3 5.2 0.00011 22.1 4.1 30 482-511 1-30 (33)
361 PF08311 Mad3_BUB1_I: Mad3/BUB 78.4 25 0.00054 27.8 8.9 42 486-527 81-124 (126)
362 KOG2396 HAT (Half-A-TPR) repea 78.2 76 0.0016 31.6 33.8 241 280-529 298-557 (568)
363 PRK12798 chemotaxis protein; R 78.2 70 0.0015 31.1 22.5 183 347-532 125-325 (421)
364 smart00028 TPR Tetratricopepti 77.5 5.2 0.00011 21.4 3.8 29 503-531 2-30 (34)
365 KOG0276 Vesicle coat complex C 77.4 30 0.00065 35.0 10.6 135 28-192 614-748 (794)
366 KOG0551 Hsp90 co-chaperone CNS 76.8 20 0.00044 33.3 8.7 87 442-528 87-179 (390)
367 KOG4642 Chaperone-dependent E3 76.8 39 0.00085 29.9 9.9 114 375-493 20-142 (284)
368 COG3947 Response regulator con 76.2 63 0.0014 29.6 13.9 59 438-496 281-341 (361)
369 PF09477 Type_III_YscG: Bacter 76.2 31 0.00068 26.1 8.7 82 142-226 18-99 (116)
370 KOG4077 Cytochrome c oxidase, 75.1 22 0.00047 27.8 7.1 70 383-463 67-136 (149)
371 KOG0376 Serine-threonine phosp 74.9 2.4 5.3E-05 41.1 2.7 101 406-509 10-113 (476)
372 PF09670 Cas_Cas02710: CRISPR- 74.8 70 0.0015 31.2 12.6 55 374-429 140-198 (379)
373 PF10579 Rapsyn_N: Rapsyn N-te 74.7 11 0.00023 26.6 5.0 47 412-458 18-65 (80)
374 cd08819 CARD_MDA5_2 Caspase ac 74.6 23 0.0005 25.6 6.7 66 47-115 21-86 (88)
375 PF12862 Apc5: Anaphase-promot 74.3 13 0.00027 27.6 5.9 52 479-530 9-69 (94)
376 KOG0686 COP9 signalosome, subu 74.2 87 0.0019 30.2 14.1 60 166-225 151-216 (466)
377 PF07163 Pex26: Pex26 protein; 74.0 44 0.00095 30.4 9.8 84 340-423 89-181 (309)
378 KOG4507 Uncharacterized conser 73.3 12 0.00025 37.6 6.7 99 413-512 620-720 (886)
379 PF10579 Rapsyn_N: Rapsyn N-te 73.3 11 0.00024 26.6 4.8 45 480-524 18-65 (80)
380 PF14863 Alkyl_sulf_dimr: Alky 72.7 24 0.00051 28.6 7.4 65 452-519 57-121 (141)
381 KOG1586 Protein required for f 72.3 70 0.0015 28.3 17.4 19 482-500 209-227 (288)
382 KOG1550 Extracellular protein 71.3 1.3E+02 0.0029 31.2 24.5 247 276-532 261-539 (552)
383 PRK10941 hypothetical protein; 70.5 44 0.00096 30.6 9.5 67 440-506 185-253 (269)
384 PF04910 Tcf25: Transcriptiona 70.2 1.1E+02 0.0024 29.7 18.7 88 442-529 109-220 (360)
385 COG4785 NlpI Lipoprotein NlpI, 70.2 75 0.0016 27.8 17.6 179 312-498 78-267 (297)
386 KOG3364 Membrane protein invol 69.4 31 0.00067 27.5 7.0 72 433-504 29-107 (149)
387 KOG2396 HAT (Half-A-TPR) repea 69.2 1.3E+02 0.0028 30.1 32.8 65 27-92 104-168 (568)
388 PF13929 mRNA_stabil: mRNA sta 68.7 97 0.0021 28.5 19.7 260 71-348 3-292 (292)
389 KOG2471 TPR repeat-containing 68.5 84 0.0018 31.2 11.0 96 475-570 213-327 (696)
390 TIGR02508 type_III_yscG type I 67.7 49 0.0011 24.7 9.8 85 315-403 21-105 (115)
391 KOG2063 Vacuolar assembly/sort 67.6 1.9E+02 0.0042 31.6 17.8 28 97-124 506-533 (877)
392 KOG2066 Vacuolar assembly/sort 66.5 1.8E+02 0.0039 30.8 26.7 27 339-365 510-536 (846)
393 PF12968 DUF3856: Domain of Un 66.5 51 0.0011 25.6 7.4 60 469-528 56-126 (144)
394 KOG0403 Neoplastic transformat 65.5 1.4E+02 0.0031 29.3 17.5 24 267-290 348-371 (645)
395 PF04190 DUF410: Protein of un 64.7 1.1E+02 0.0025 27.9 15.3 159 346-531 2-170 (260)
396 PF11846 DUF3366: Domain of un 64.3 31 0.00067 29.8 7.2 37 463-499 139-175 (193)
397 KOG1498 26S proteasome regulat 64.3 1.4E+02 0.003 28.8 14.3 95 438-536 133-246 (439)
398 PF07163 Pex26: Pex26 protein; 64.2 81 0.0018 28.8 9.4 88 270-357 89-181 (309)
399 COG5159 RPN6 26S proteasome re 63.6 1.2E+02 0.0026 27.8 20.5 272 202-499 9-316 (421)
400 COG5191 Uncharacterized conser 63.1 18 0.00038 33.3 5.3 80 431-510 102-184 (435)
401 PRK13800 putative oxidoreducta 62.6 2.6E+02 0.0056 31.3 27.7 127 261-393 753-880 (897)
402 KOG4507 Uncharacterized conser 62.3 39 0.00084 34.1 7.8 133 397-532 568-706 (886)
403 PRK13800 putative oxidoreducta 62.1 2.6E+02 0.0057 31.2 28.4 140 61-211 632-771 (897)
404 PF04910 Tcf25: Transcriptiona 61.2 1.6E+02 0.0035 28.5 14.9 126 22-158 34-167 (360)
405 PF12862 Apc5: Anaphase-promot 61.1 58 0.0013 24.1 7.1 25 474-498 47-71 (94)
406 PRK14700 recombination factor 61.0 1.4E+02 0.0031 27.7 12.7 50 264-313 123-175 (300)
407 PF11846 DUF3366: Domain of un 60.9 39 0.00085 29.1 7.2 31 432-462 140-170 (193)
408 PF10255 Paf67: RNA polymerase 60.7 51 0.0011 32.2 8.3 57 473-529 127-191 (404)
409 COG4976 Predicted methyltransf 60.6 17 0.00036 31.9 4.5 55 447-501 6-62 (287)
410 PF09477 Type_III_YscG: Bacter 60.5 73 0.0016 24.2 8.6 78 314-394 21-98 (116)
411 PF10366 Vps39_1: Vacuolar sor 60.3 75 0.0016 24.3 8.0 27 367-393 41-67 (108)
412 PF10366 Vps39_1: Vacuolar sor 59.4 64 0.0014 24.7 7.2 27 97-123 41-67 (108)
413 COG4976 Predicted methyltransf 59.4 21 0.00044 31.3 4.8 56 478-533 5-60 (287)
414 smart00777 Mad3_BUB1_I Mad3/BU 59.1 88 0.0019 24.7 8.5 40 487-526 82-123 (125)
415 cd08819 CARD_MDA5_2 Caspase ac 58.3 69 0.0015 23.3 6.6 64 150-215 22-85 (88)
416 PF11848 DUF3368: Domain of un 57.7 45 0.00098 20.9 5.1 38 203-240 9-46 (48)
417 PF14561 TPR_20: Tetratricopep 57.3 75 0.0016 23.3 7.7 42 490-531 10-51 (90)
418 KOG4077 Cytochrome c oxidase, 56.8 75 0.0016 25.0 6.9 48 461-508 77-124 (149)
419 PF14689 SPOB_a: Sensor_kinase 56.7 23 0.00049 23.8 3.8 29 502-530 23-51 (62)
420 KOG3364 Membrane protein invol 56.4 72 0.0016 25.5 6.9 68 465-532 29-101 (149)
421 KOG4814 Uncharacterized conser 55.3 1.3E+02 0.0028 31.1 10.0 84 448-531 366-457 (872)
422 PF07720 TPR_3: Tetratricopept 55.2 40 0.00088 19.6 4.8 16 475-490 8-23 (36)
423 KOG0687 26S proteasome regulat 54.1 1.9E+02 0.0042 27.1 13.2 26 402-427 106-131 (393)
424 PF13762 MNE1: Mitochondrial s 53.5 1.2E+02 0.0026 24.7 9.7 79 168-246 42-130 (145)
425 PF08311 Mad3_BUB1_I: Mad3/BUB 53.1 1.1E+02 0.0024 24.1 8.7 43 383-425 81-124 (126)
426 PRK10564 maltose regulon perip 52.1 27 0.00059 32.1 4.7 44 194-237 254-298 (303)
427 COG0735 Fur Fe2+/Zn2+ uptake r 52.1 65 0.0014 26.3 6.5 64 116-180 7-70 (145)
428 PF14853 Fis1_TPR_C: Fis1 C-te 52.0 55 0.0012 21.2 4.8 27 373-401 9-35 (53)
429 KOG2422 Uncharacterized conser 51.7 2.9E+02 0.0062 28.4 13.1 78 102-179 349-430 (665)
430 PRK09857 putative transposase; 51.4 1.4E+02 0.0031 27.8 9.5 65 471-535 209-273 (292)
431 PF00244 14-3-3: 14-3-3 protei 50.8 1.9E+02 0.0041 26.0 9.9 160 270-429 7-198 (236)
432 KOG3824 Huntingtin interacting 50.4 37 0.0008 31.2 5.2 59 447-505 127-187 (472)
433 KOG2471 TPR repeat-containing 50.4 2.8E+02 0.006 27.8 16.5 103 342-447 248-380 (696)
434 PHA02875 ankyrin repeat protei 49.2 2.7E+02 0.0059 27.4 16.7 177 39-230 10-195 (413)
435 PRK10564 maltose regulon perip 49.0 36 0.00077 31.4 4.9 40 266-305 259-298 (303)
436 COG4941 Predicted RNA polymera 48.2 2.5E+02 0.0053 26.6 12.2 119 381-503 272-400 (415)
437 KOG0403 Neoplastic transformat 47.8 2.9E+02 0.0062 27.3 16.9 56 338-393 349-408 (645)
438 PF04190 DUF410: Protein of un 47.7 2.2E+02 0.0048 26.0 19.8 82 333-429 89-170 (260)
439 PF11663 Toxin_YhaV: Toxin wit 47.4 27 0.00058 27.7 3.4 31 207-239 106-136 (140)
440 KOG3807 Predicted membrane pro 47.3 1.5E+02 0.0032 27.8 8.5 62 441-502 280-346 (556)
441 PF09670 Cas_Cas02710: CRISPR- 47.1 2.8E+02 0.0061 27.1 11.2 57 102-159 138-198 (379)
442 PF08424 NRDE-2: NRDE-2, neces 47.0 2.6E+02 0.0056 26.6 15.9 135 364-501 18-190 (321)
443 KOG0376 Serine-threonine phosp 47.0 43 0.00093 33.0 5.4 104 372-480 11-117 (476)
444 cd00280 TRFH Telomeric Repeat 46.9 1.3E+02 0.0027 25.7 7.3 55 416-471 85-146 (200)
445 COG2912 Uncharacterized conser 46.0 78 0.0017 28.8 6.5 57 475-531 188-244 (269)
446 PF11663 Toxin_YhaV: Toxin wit 45.7 25 0.00055 27.8 3.0 33 376-410 106-138 (140)
447 PF11838 ERAP1_C: ERAP1-like C 45.6 2.7E+02 0.0058 26.3 18.6 80 417-496 147-229 (324)
448 KOG3807 Predicted membrane pro 45.4 2.7E+02 0.0058 26.2 14.8 18 486-503 380-397 (556)
449 PF11817 Foie-gras_1: Foie gra 45.0 1.1E+02 0.0023 27.8 7.5 56 473-528 183-244 (247)
450 KOG1114 Tripeptidyl peptidase 44.5 4.7E+02 0.01 28.8 12.4 130 315-462 1163-1292(1304)
451 PF11848 DUF3368: Domain of un 44.2 80 0.0017 19.8 5.2 34 274-307 12-45 (48)
452 KOG2582 COP9 signalosome, subu 44.0 3E+02 0.0065 26.4 11.9 16 177-192 195-210 (422)
453 PRK13342 recombination factor 43.5 3.4E+02 0.0074 26.9 14.9 48 266-313 229-279 (413)
454 TIGR02710 CRISPR-associated pr 43.3 3.2E+02 0.007 26.6 11.9 53 373-425 138-196 (380)
455 PF14689 SPOB_a: Sensor_kinase 43.1 55 0.0012 22.0 4.0 23 405-427 28-50 (62)
456 KOG2297 Predicted translation 43.0 2.1E+02 0.0045 26.7 8.5 20 401-420 322-341 (412)
457 KOG0530 Protein farnesyltransf 42.8 2.7E+02 0.0057 25.4 12.8 89 452-540 94-185 (318)
458 PF13934 ELYS: Nuclear pore co 42.7 2.5E+02 0.0053 25.1 10.6 119 400-524 76-198 (226)
459 PF11768 DUF3312: Protein of u 42.4 3.9E+02 0.0085 27.3 11.3 55 339-393 413-472 (545)
460 KOG1524 WD40 repeat-containing 42.2 1.3E+02 0.0028 30.2 7.7 57 399-462 572-628 (737)
461 cd00280 TRFH Telomeric Repeat 42.2 1.7E+02 0.0036 25.0 7.3 66 381-450 85-157 (200)
462 KOG4279 Serine/threonine prote 42.2 4.6E+02 0.0099 28.0 13.9 191 317-531 181-395 (1226)
463 PF11817 Foie-gras_1: Foie gra 41.9 97 0.0021 28.0 6.8 21 406-426 184-204 (247)
464 KOG1498 26S proteasome regulat 41.6 3.4E+02 0.0073 26.3 15.0 92 371-462 137-238 (439)
465 PF06957 COPI_C: Coatomer (COP 41.3 1.8E+02 0.0039 28.7 8.6 41 461-501 291-333 (422)
466 KOG3636 Uncharacterized conser 40.8 2.4E+02 0.0052 27.6 9.0 85 292-377 176-272 (669)
467 PF14669 Asp_Glu_race_2: Putat 40.7 2.4E+02 0.0051 24.3 13.9 58 405-462 137-207 (233)
468 COG4259 Uncharacterized protei 40.2 1.1E+02 0.0023 22.9 5.2 55 483-539 52-107 (121)
469 PF04090 RNA_pol_I_TF: RNA pol 40.2 2.5E+02 0.0054 24.4 10.4 62 365-427 41-103 (199)
470 KOG0991 Replication factor C, 40.1 2.7E+02 0.0059 24.9 12.5 122 270-400 136-273 (333)
471 COG2256 MGS1 ATPase related to 39.8 3.7E+02 0.0081 26.3 13.6 52 262-313 244-298 (436)
472 KOG2908 26S proteasome regulat 39.6 3.4E+02 0.0074 25.8 11.4 17 412-428 87-103 (380)
473 PF11838 ERAP1_C: ERAP1-like C 39.4 3.3E+02 0.0072 25.6 19.2 56 338-393 173-229 (324)
474 KOG2063 Vacuolar assembly/sort 39.0 5.7E+02 0.012 28.2 18.7 59 31-92 310-374 (877)
475 PF09454 Vps23_core: Vps23 cor 38.0 1E+02 0.0022 21.0 4.7 49 363-412 6-54 (65)
476 COG0735 Fur Fe2+/Zn2+ uptake r 37.9 1.9E+02 0.0042 23.5 7.3 61 388-450 9-69 (145)
477 cd08326 CARD_CASP9 Caspase act 37.7 1.6E+02 0.0034 21.4 5.9 63 47-114 18-80 (84)
478 KOG4567 GTPase-activating prot 37.7 3.5E+02 0.0075 25.3 9.7 44 285-328 264-307 (370)
479 KOG2062 26S proteasome regulat 37.5 5.4E+02 0.012 27.5 28.3 459 44-529 39-528 (929)
480 KOG2581 26S proteasome regulat 37.1 4.1E+02 0.0089 26.0 15.8 61 402-462 211-273 (493)
481 COG5159 RPN6 26S proteasome re 37.1 3.4E+02 0.0074 25.0 18.3 122 101-222 9-151 (421)
482 COG5108 RPO41 Mitochondrial DN 37.0 1.7E+02 0.0037 30.4 7.8 70 69-141 33-114 (1117)
483 COG5108 RPO41 Mitochondrial DN 36.8 2E+02 0.0042 30.0 8.2 75 405-479 33-114 (1117)
484 COG5187 RPN7 26S proteasome re 36.6 3.2E+02 0.007 25.2 8.7 115 417-532 55-185 (412)
485 PF10255 Paf67: RNA polymerase 36.4 1.6E+02 0.0035 28.9 7.5 68 198-291 124-191 (404)
486 COG0790 FOG: TPR repeat, SEL1 35.1 3.7E+02 0.008 24.9 20.3 48 483-533 206-268 (292)
487 PF07575 Nucleopor_Nup85: Nup8 35.0 1.1E+02 0.0024 31.9 6.7 244 127-410 294-540 (566)
488 KOG2659 LisH motif-containing 34.8 3.3E+02 0.0071 24.2 10.3 104 387-495 15-130 (228)
489 PF11123 DNA_Packaging_2: DNA 34.5 88 0.0019 21.7 3.8 34 43-78 12-45 (82)
490 PF12583 TPPII_N: Tripeptidyl 34.5 1.9E+02 0.0041 22.9 6.1 39 477-515 85-123 (139)
491 KOG1839 Uncharacterized protei 34.4 3.4E+02 0.0075 30.9 10.2 121 409-530 941-1085(1236)
492 PRK11639 zinc uptake transcrip 34.2 1.9E+02 0.004 24.4 6.8 60 391-452 17-76 (169)
493 PF12796 Ank_2: Ankyrin repeat 34.0 1.5E+02 0.0033 21.1 5.7 12 77-88 7-18 (89)
494 PF09454 Vps23_core: Vps23 cor 33.8 88 0.0019 21.3 3.9 48 262-310 6-53 (65)
495 KOG2168 Cullins [Cell cycle co 33.8 6.5E+02 0.014 27.4 15.6 18 512-529 717-734 (835)
496 PF09986 DUF2225: Uncharacteri 32.9 3.4E+02 0.0074 23.9 8.5 50 382-431 142-196 (214)
497 KOG0292 Vesicle coat complex C 32.8 7E+02 0.015 27.4 12.3 130 343-496 652-781 (1202)
498 PRK13342 recombination factor 32.7 5E+02 0.011 25.7 15.5 99 296-412 173-277 (413)
499 PF04034 DUF367: Domain of unk 31.5 2.6E+02 0.0057 22.1 7.6 57 437-493 67-124 (127)
500 COG5191 Uncharacterized conser 31.5 84 0.0018 29.1 4.4 72 465-540 104-176 (435)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.5e-79 Score=650.92 Aligned_cols=534 Identities=35% Similarity=0.623 Sum_probs=505.9
Q ss_pred ccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCC-----------------------------------hhHHHH
Q 008276 25 QYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSN-----------------------------------PSIGLK 69 (571)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------------------------------~~~~~~ 69 (571)
+|+..+|+.++.+|.+.|++++|.++|.+|. ..|+.|| ..+++.
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 227 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence 4667777777777777777777777777776 5565555 455677
Q ss_pred HHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHH
Q 008276 70 LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG 149 (571)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 149 (571)
|+.+|+++|++++|.++|+.|+++|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 008276 150 LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229 (571)
Q Consensus 150 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 229 (571)
.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|..||..+||.+|.+|++.|++++|+++|++|.+.|+.|
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCcc---------------------------------HHHHHHHHhhCCCCChhhHHHHHHHHHH
Q 008276 230 DADTMASLLPSVTNTSPEN---------------------------------VLSVKEMFLKLDNKNLVSWNVMIAVYAN 276 (571)
Q Consensus 230 ~~~t~~~ll~~~~~~~~~~---------------------------------~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 276 (571)
|..||+.++.+|++.+..+ ++.|.++|+.+.++|..+|++++.+|++
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 9998888888776665432 7889999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 008276 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTV 356 (571)
Q Consensus 277 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (571)
.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++
T Consensus 468 ~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~ 546 (857)
T PLN03077 468 NNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546 (857)
T ss_pred CCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHH
Confidence 9999999999999986 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH
Q 008276 357 FDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436 (571)
Q Consensus 357 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 436 (571)
|+.+ .+|..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+++.|+.
T Consensus 547 f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 547 FNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 9999 899999999999999999999999999999999999999999999999999999999999999999777999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516 (571)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 516 (571)
.+|++++.+|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++...+++.+++|++...|..+++.|...|
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCCceE-EEECCEEEEEeCCCCCCCCCc
Q 008276 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRSSKCLT 561 (571)
Q Consensus 517 ~~~~A~~~~~~m~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 561 (571)
+|++|.++.+.|+++|++++||+| |++++++|.|..+|++||+..
T Consensus 706 ~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~ 751 (857)
T PLN03077 706 KWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIK 751 (857)
T ss_pred ChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchH
Confidence 999999999999999999999999 999999999999999999753
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-71 Score=578.80 Aligned_cols=496 Identities=25% Similarity=0.458 Sum_probs=478.1
Q ss_pred CCCChhHHHHHHHHhhcCCChHHHHHHHcccCC-----CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHH
Q 008276 60 LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN-----KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYP 134 (571)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 134 (571)
..++..+|+.+|..|.+.|++++|.++|+.|.. ||..+|+.++.++.+.++++.+.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 344667899999999999999999999998853 688899999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC----CCchhHHHHHHHHHhCC
Q 008276 135 CVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS----KDVVTWNSMVAGYAQNG 210 (571)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g 210 (571)
.++..|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+ |+..+|+.++.+|++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999995 58999999999999999999999999999964 78899999999999999
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHH
Q 008276 211 RFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290 (571)
Q Consensus 211 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 290 (571)
..+.+.+++..+.+.|+.||..+++.++.+|++.+. ++.|.++|+.+.++|..+||+++.+|++.|++++|+++|++|
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~--~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD--IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC--HHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHH
Q 008276 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370 (571)
Q Consensus 291 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 370 (571)
.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+++.|+++|++.|++++|.++|++|.+||..+||.
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~ 396 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 008276 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450 (571)
Q Consensus 371 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (571)
||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+++.|+..+|++++.+|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999987799999999999999999999
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 451 KVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 451 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
++++|.+++++++..|+..+|++++.+|..+|+++.|..+++++.+.+|++..+|..++.+|.+.|++++|.+++++|.+
T Consensus 477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceE-EEECCEEEEEeCCCCCCCCCc
Q 008276 531 KGIKKMPGAS-VEMNDQVQIIALPLRSSKCLT 561 (571)
Q Consensus 531 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 561 (571)
+|+.+.||+| |++++++|.|..+|.+||...
T Consensus 557 ~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~ 588 (697)
T PLN03081 557 KGLSMHPACTWIEVKKQDHSFFSGDRLHPQSR 588 (697)
T ss_pred cCCccCCCeeEEEECCeEEEEccCCCCCccHH
Confidence 9999999999 999999999999999998753
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.1e-70 Score=581.40 Aligned_cols=507 Identities=27% Similarity=0.479 Sum_probs=456.4
Q ss_pred cccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHH
Q 008276 26 YTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY 105 (571)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 105 (571)
|+..++..++..|.+.+.++.+.+++..+. +.+..++..++|.|+..|++.|+++.|.++|++|++||..+||.+|.+|
T Consensus 84 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~ 162 (857)
T PLN03077 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRAL-SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGY 162 (857)
T ss_pred CChhHHHHHHHHHhhCCCHHHHHHHHHHHH-HcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHH
Confidence 333344444444444444444444444444 4455555666688899999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHH
Q 008276 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185 (571)
Q Consensus 106 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 185 (571)
++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..|.+.|+.|+..+++.|+.+|++.|++++|.
T Consensus 163 ~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 242 (857)
T PLN03077 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242 (857)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCcc-----------------
Q 008276 186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN----------------- 248 (571)
Q Consensus 186 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~----------------- 248 (571)
++|++|..+|..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.++.+
T Consensus 243 ~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred HHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 999999999999999999999999999999999999999999888888888887776655432
Q ss_pred ----------------HHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC
Q 008276 249 ----------------VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312 (571)
Q Consensus 249 ----------------~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 312 (571)
++.|.++|+.+..+|..+|++++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc
Confidence 8889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008276 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392 (571)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 392 (571)
|+++.+.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 008276 393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG 472 (571)
Q Consensus 393 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 472 (571)
. ++.||..||+.++.+|++.|+++.+.+++..+.+. |+.++..++++|+.+|+++|++++|.++|+++ .||..+|+
T Consensus 483 ~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n 558 (857)
T PLN03077 483 L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWN 558 (857)
T ss_pred h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHH
Confidence 6 59999999999999999999999999999999887 88888888888888888888888888888887 78888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCC
Q 008276 473 SLVAACCLYSNMDIGILAADHIFHLA-PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN-SKGIKKMP 537 (571)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~ 537 (571)
+++.+|++.|+.++|+++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|++|. +.|+.|+.
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 88888888888888888888888765 4567788888888888888888888888887 67777654
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.3e-67 Score=546.52 Aligned_cols=511 Identities=17% Similarity=0.226 Sum_probs=476.4
Q ss_pred hccccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcC-CCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHH
Q 008276 22 LSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHL-HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV 100 (571)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 100 (571)
.+..++...+..+...|.+.|++++|.++|+.|. +.|+ +++..+++.++..|.+.|.+++|.++|+.|..||..+|+.
T Consensus 364 ~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~-~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~ 442 (1060)
T PLN03218 364 VSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDME-KRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNM 442 (1060)
T ss_pred cCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 3445667788888888999999999999999999 7775 5678888899999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 008276 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180 (571)
Q Consensus 101 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 180 (571)
++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCC----CCchhHHHHHHHHHhCCCchHHHHHHHHHHH--CCCCCCHHHHHHHHHHhcCCCCccHHHHHH
Q 008276 181 LKEARRVLNDMPS----KDVVTWNSMVAGYAQNGRFDEALDVCREMES--LRIKPDADTMASLLPSVTNTSPENVLSVKE 254 (571)
Q Consensus 181 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~ 254 (571)
+++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.++ ++.|.+
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~--ldeA~e 600 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ--VDRAKE 600 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC--HHHHHH
Confidence 9999999999964 8999999999999999999999999999986 6899999999999999999999 999999
Q ss_pred HHhhCC----CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCC
Q 008276 255 MFLKLD----NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL 330 (571)
Q Consensus 255 ~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 330 (571)
+|+.+. .|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 998886 5778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008276 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMR----CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406 (571)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 406 (571)
.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999995 599999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHhC-
Q 008276 407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR----A-------------------GKVEEAYDLIKQM- 462 (571)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~- 462 (571)
+.+|++.|++++|.++++.|.+. |+.||..+|++++..+.+ + +..++|..+|++|
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 99999999999999999999888 999999999999876432 2 1246799999999
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 008276 463 --PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA-PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG 538 (571)
Q Consensus 463 --~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 538 (571)
++.||..+|+.++.++++.++.+.+..+++.+.... +++..+|..++.++.+. .++|..++++|...|+.|+..
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 899999999999988888999999999888776543 67888999999987432 368999999999999987775
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-61 Score=505.90 Aligned_cols=470 Identities=15% Similarity=0.210 Sum_probs=439.9
Q ss_pred cCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCC-----hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccH
Q 008276 59 HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN-----VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY 133 (571)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 133 (571)
...++...|..++..|++.|++++|.++|+.|++++ ..+++.++..|.+.|..++|+.+|+.|.. ||..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 445678889999999999999999999999998754 44567788889999999999999999974 999999
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCC----CCCchhHHHHHHHHHhC
Q 008276 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP----SKDVVTWNSMVAGYAQN 209 (571)
Q Consensus 134 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 209 (571)
+.++.+|++.|+++.|.+++++|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.+|.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999998 48999999999999999
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCC------CCChhhHHHHHHHHHHcCCchHH
Q 008276 210 GRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD------NKNLVSWNVMIAVYANNSMPAEA 283 (571)
Q Consensus 210 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A 283 (571)
|++++|.++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++++.+. .||..+|++++.+|++.|++++|
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~--~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA--VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999998 999999998873 58999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-
Q 008276 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC- 362 (571)
Q Consensus 284 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 362 (571)
.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred ---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHH
Q 008276 363 ---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439 (571)
Q Consensus 363 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 439 (571)
||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+. |+.||..+|
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty 757 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITY 757 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999887 999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHH
Q 008276 440 ACLVDLLGRAGKVEEAYDLIKQM---PMEPNERIWGSLVAACCL----Y-------------------SNMDIGILAADH 493 (571)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~ 493 (571)
+.++.+|++.|++++|.+++++| ++.||..+|+.++..|.+ . +..++|..+|++
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e 837 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE 837 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence 99999999999999999999999 899999999999876542 1 124679999999
Q ss_pred HHhhC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008276 494 IFHLA-PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK 535 (571)
Q Consensus 494 ~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 535 (571)
|.+.+ .++..+|..++.++...+..+.+..+++.|...+..+
T Consensus 838 M~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~ 880 (1060)
T PLN03218 838 TISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQ 880 (1060)
T ss_pred HHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCc
Confidence 99987 6678899999988889999999999999887666543
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-59 Score=491.83 Aligned_cols=433 Identities=22% Similarity=0.332 Sum_probs=337.7
Q ss_pred cccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHH
Q 008276 24 TQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR 103 (571)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 103 (571)
..|+..+++.++.+|.+.++++.+.+++..+. +.|+.||..+|+.|+..|++.|++++|.++|++|++||..+||.++.
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVE-SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 45788899999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHH
Q 008276 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE 183 (571)
Q Consensus 104 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 183 (571)
+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.|+.+|..+++.|+++|+++|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCC
Q 008276 184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKN 263 (571)
Q Consensus 184 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 263 (571)
|.++|++|.++|+.+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 278 A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~---------------------- 335 (697)
T PLN03081 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF---------------------- 335 (697)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----------------------
Confidence 9999999999999999999999999999999999999999999999877666655555
Q ss_pred hhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 008276 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343 (571)
Q Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 343 (571)
++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|. .||..+|+.|+.+
T Consensus 336 -----------~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~ 400 (697)
T PLN03081 336 -----------SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAG 400 (697)
T ss_pred -----------HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHH
Confidence 4555566666666666666666666666666666666666666666666554 3455566666666
Q ss_pred HHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhcCCCHHH
Q 008276 344 YAKCGSLTEARTVFDQMR----CQDVVSWTSMISAYGMSGQGYDAVALFSKMLM-SGLCPDSIAFVSVLSACSHAGLLEE 418 (571)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~~~~~~ 418 (571)
|++.|+.++|.++|++|. .||..||+.++.+|++.|+.++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 666666666666666654 25666666666666666666666666666654 4566666666666666666666666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 419 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (571)
|.++++++ ++.|+..+|++++.+|...|+++.|..+++++ +..| +..+|..++..|++.|++++|.++++.|.+
T Consensus 481 A~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 481 AYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 66665544 45566666666666666666666666666555 4444 244566666666666666666666666665
Q ss_pred hC
Q 008276 497 LA 498 (571)
Q Consensus 497 ~~ 498 (571)
.+
T Consensus 557 ~g 558 (697)
T PLN03081 557 KG 558 (697)
T ss_pred cC
Confidence 44
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.7e-31 Score=291.37 Aligned_cols=494 Identities=11% Similarity=0.051 Sum_probs=326.0
Q ss_pred ccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCC---ChhhHHHH
Q 008276 25 QYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK---NVVFFNVL 101 (571)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 101 (571)
+.+...+..++.++.+.|++++|.+.|.++. +.. +.+...+..+...+...|++++|.+.|+..... +...+..+
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 437 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKAT-ELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLL 437 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHH
Confidence 4445567778888899999999999999887 554 346677788888888888888888888776542 33455667
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH
Q 008276 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181 (571)
Q Consensus 102 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 181 (571)
+..+.+.|++++|+.+++.+... .+++..++..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCH
Confidence 77777888888888888877764 34456677777777778888888888887777653 34455666677777777777
Q ss_pred HHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhh
Q 008276 182 KEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLK 258 (571)
Q Consensus 182 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~ 258 (571)
++|.+.|+.+.. .+..++..+...+.+.|++++|...++++...+ +.+...+..+...+...++ .+.+...++.
T Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~ 592 (899)
T TIGR02917 516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQ--LKKALAILNE 592 (899)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence 777777777653 245566677777777777777777777776543 2334455556666666665 6666666655
Q ss_pred CC---CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChh
Q 008276 259 LD---NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335 (571)
Q Consensus 259 ~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 335 (571)
+. +.+...|..++.+|...|++++|...|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+..
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 670 (899)
T TIGR02917 593 AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTE 670 (899)
T ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHH
Confidence 54 3455667777777777777777777777766543 3345556666666667777777777777766654 34455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 008276 336 LENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412 (571)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 412 (571)
.+..+...+...|++++|..+++.+.+ .+...+..+...+...|++++|.+.|+++... .|+..++..+..++..
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHH
Confidence 666666666667777777766666653 34445666666666666666666666666663 3444555556666666
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 008276 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILA 490 (571)
Q Consensus 413 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 490 (571)
.|++++|...++.+.+ ..+.+...+..+...|...|++++|.+.|+++ ...| +..++..+...+...|+ .+|+..
T Consensus 749 ~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~ 825 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEY 825 (899)
T ss_pred CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHH
Confidence 6666666666666655 23445556666666666666666666666665 2222 45556666666666666 556666
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 491 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
++++.+..|+++..+..++.++...|++++|.++++++.+.+
T Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 826 AEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666666666666666666666666666666666666666544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.3e-31 Score=288.54 Aligned_cols=487 Identities=11% Similarity=0.000 Sum_probs=235.8
Q ss_pred ChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHH
Q 008276 30 SGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYV 106 (571)
Q Consensus 30 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 106 (571)
.+..++.++.+.|++++|...+..+. ... +.+...+..+...+.+.|++++|.+.|+.+.+ .+...|..+...+.
T Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 408 (899)
T TIGR02917 331 ARRLLASIQLRLGRVDEAIATLSPAL-GLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL 408 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34444555555555555555555554 322 22444455555555555555555555554432 13334444555555
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHH
Q 008276 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR 186 (571)
Q Consensus 107 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 186 (571)
..|++++|++.|+.+.+... ........++..+.+.|++++|..+++.+.... +.+..++..+..++...|++++|..
T Consensus 409 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred hCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 55555555555555544321 112223334444555555555555555554432 3344455555555555555555555
Q ss_pred HHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCC---
Q 008276 187 VLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD--- 260 (571)
Q Consensus 187 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~--- 260 (571)
.|+++.+ .+...+..+...+...|++++|.+.|+++...+ +.+..++..+...+...++ .+.+...+.+..
T Consensus 487 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 487 AFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGN--EEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhC
Confidence 5554432 223344444555555555555555555554432 2233344444444444443 444444444432
Q ss_pred CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 008276 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340 (571)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 340 (571)
+.+...+..++..|...|++++|..+++++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 641 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLL 641 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 2233444445555555555555555555554432 3344445555555555555555555555555433 2333444445
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH
Q 008276 341 VDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417 (571)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 417 (571)
..++...|++++|...|+.+.+ .+..++..++..+...|++++|..+++.+.+.+ +++...+..+...+...|+++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHH
Confidence 5555555555555555554432 233445555555555555555555555555432 223334444455555555555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PME-PNERIWGSLVAACCLYSNMDIGILAADHIF 495 (571)
Q Consensus 418 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 495 (571)
+|...|+.+... .|+..++..++.++.+.|++++|.+.++++ ... .+...+..+...|...|++++|...|+++.
T Consensus 721 ~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 721 AAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 555555555432 233344444555555555555555555544 112 234444555555555555555555555555
Q ss_pred hhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 496 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
+..|+++.++..++.++...|+ .+|+.+++++.+
T Consensus 798 ~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 798 KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 5555555555555555555555 445555555443
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=4.6e-23 Score=226.77 Aligned_cols=491 Identities=11% Similarity=0.007 Sum_probs=243.6
Q ss_pred hhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhH-HHHHHHHhhcCCChHHHHHHHcccCC--C-ChhhHHHHHHHHH
Q 008276 31 GDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSI-GLKLMRTYGACGQMVDTRHVFDEITN--K-NVVFFNVLIRSYV 106 (571)
Q Consensus 31 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 106 (571)
...+++++.+.|++++|.+.+..+. +.+ +|+... ...+.......|+.++|++.|+.+.. | +...+..+...+.
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l-~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLF-NGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLF 192 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHc-cCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3556778999999999999999998 544 334322 22222233346999999999998875 3 5567888999999
Q ss_pred HcCChhHHHHHHHHHHhCCCC----------------CCcc---cHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhH
Q 008276 107 NNYLYYDALHVYKNMSVHGFD----------------PDCY---TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167 (571)
Q Consensus 107 ~~~~~~~A~~~~~~m~~~g~~----------------p~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 167 (571)
..|++++|+..++++.+.... ++.. .+...+..+-.......+...+.........|+..
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~- 271 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR- 271 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-
Confidence 999999999999998653210 0000 01111111111111222222222222211111111
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCC--C-CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHHHHHHH------
Q 008276 168 GNGLVAMYGKCGCLKEARRVLNDMPS--K-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP-DADTMASL------ 237 (571)
Q Consensus 168 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~l------ 237 (571)
.......+...|++++|+..|++..+ | +...+..+..++.+.|++++|+..|++..+..... ....+..+
T Consensus 272 ~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 272 ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 11223334444555555555544432 2 33444444445555555555555555444322111 10011000
Q ss_pred ------HHHhcCCCCccHHHHHHHHhhCC---CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHH-----
Q 008276 238 ------LPSVTNTSPENVLSVKEMFLKLD---NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA----- 303 (571)
Q Consensus 238 ------l~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~----- 303 (571)
-..+.+.++ .+.|...+++.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+.
T Consensus 352 ~~~~~~g~~~~~~g~--~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l 428 (1157)
T PRK11447 352 WLLIQQGDAALKANN--LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 011122222 444444444333 1233344444445555555555555555444321 11111111
Q ss_pred -------------------------------------HHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 008276 304 -------------------------------------SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346 (571)
Q Consensus 304 -------------------------------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (571)
.+...+...|++++|...++++.+.. +.+...+..+...|.+
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 12223334555566666665555543 2234444455555666
Q ss_pred cCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-----------------------------
Q 008276 347 CGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMS----------------------------- 394 (571)
Q Consensus 347 ~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----------------------------- 394 (571)
.|++++|...++++.+ | +...+..+...+...++.++|+..++.+...
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 6666666665555432 2 2222222222233334444443333322110
Q ss_pred ----------CCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 008276 395 ----------GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-P 463 (571)
Q Consensus 395 ----------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 463 (571)
..+++...+..+...+...|++++|...|+.+.+. .+.+...+..++.+|...|++++|++.++++ .
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 02223334455555666666666666666666652 2334555666666666666666666666655 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc------hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 464 MEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS------GYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 464 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
..| +...+..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|+..+++...
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333 344455555566666666666666666666554333 2444556666666666666666666654
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=3.2e-22 Score=220.16 Aligned_cols=490 Identities=12% Similarity=0.034 Sum_probs=295.8
Q ss_pred hhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC--CCh-hhH---------
Q 008276 31 GDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--KNV-VFF--------- 98 (571)
Q Consensus 31 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~--------- 98 (571)
.-..+++....++.+.|.+.+.++. ... +.++..+..++..+...|+.++|.+.++++.+ |+. ..+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~-~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLE-LID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHH-ccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Confidence 3446677788899999999999998 554 44788999999999999999999999998865 322 221
Q ss_pred -------HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCccc-HHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHH
Q 008276 99 -------NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYT-YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG 170 (571)
Q Consensus 99 -------~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 170 (571)
..+...+.+.|++++|+..|+++.+.+ +|+... ...........++.++|.+.++++.+.. +.+...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 233456888999999999999998753 333221 1111222335689999999999999875 556778889
Q ss_pred HHHHHHhCCCHHHHHHHHccCCCCCc-----------------------hhHH---------------------------
Q 008276 171 LVAMYGKCGCLKEARRVLNDMPSKDV-----------------------VTWN--------------------------- 200 (571)
Q Consensus 171 l~~~~~~~g~~~~A~~~~~~~~~~~~-----------------------~~~~--------------------------- 200 (571)
+..++...|+.++|+..++++..... ..+.
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 99999999999999999987642100 0000
Q ss_pred -------HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCC--CCh---hhH-
Q 008276 201 -------SMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN--KNL---VSW- 267 (571)
Q Consensus 201 -------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~--~~~---~~~- 267 (571)
.....+...|++++|+..|++..+.. +.+...+..+-..+.+.++ .++|...+++..+ |+. ..|
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~--~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGD--RARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCccchhHHH
Confidence 11234556778888888887777642 2245556666666666666 7777777766543 211 111
Q ss_pred -----------HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhH
Q 008276 268 -----------NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336 (571)
Q Consensus 268 -----------~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (571)
......+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.. +.+...
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a 421 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNA 421 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 122345667788888888888877653 3345566667777788888888888888877654 223333
Q ss_pred HHHHHHHH------------------------------------------HhcCCHHHHHHHHhhCCC--C-ChhHHHHH
Q 008276 337 ENALVDMY------------------------------------------AKCGSLTEARTVFDQMRC--Q-DVVSWTSM 371 (571)
Q Consensus 337 ~~~l~~~~------------------------------------------~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 371 (571)
+..+...| ...|++++|.+.|++..+ | +...+..+
T Consensus 422 ~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~L 501 (1157)
T PRK11447 422 VRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRL 501 (1157)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 33333333 233444444444444332 2 22333444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc--------------------
Q 008276 372 ISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY-------------------- 430 (571)
Q Consensus 372 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------- 430 (571)
...|.+.|++++|...++++.+. .| +...+..+...+...++.++|...++.+....
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 44444444444444444444432 22 22222222223334444444444444321100
Q ss_pred ------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 008276 431 ------------------KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILA 490 (571)
Q Consensus 431 ------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 490 (571)
..+.+...+..+...+.+.|++++|++.|+++ ...| +...+..++..+...|++++|+..
T Consensus 580 a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 01112223334455555556666666666655 3334 455566666666666666666666
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 491 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
++++.+..|+++.++..++.++...|++++|.++++++...
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 66666666666666666666666666666666666666544
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=5.3e-21 Score=201.09 Aligned_cols=476 Identities=10% Similarity=0.042 Sum_probs=311.6
Q ss_pred CChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCCh--hhHHHHHHHHHHcCChhHHHHHHH
Q 008276 42 PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNV--VFFNVLIRSYVNNYLYYDALHVYK 119 (571)
Q Consensus 42 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~ 119 (571)
|++++|...|.+.+ +..+. ++.++..|...|...|+.++|+..+++..+.++ ..|..++..+ +++.+|..+++
T Consensus 58 Gd~~~A~~~l~~Al-~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 58 NDEATAIREFEYIH-QQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCHHHHHHHHHHHH-HhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 66666666666666 44433 366666666666666666666666665543211 1222212111 45555555555
Q ss_pred HHHhCC--------------------------------------CCCCcccHHHH-HHHhhcCCChHHHHHHHHHHHHhC
Q 008276 120 NMSVHG--------------------------------------FDPDCYTYPCV-LKACSGSNSLLVGLQIHCSVVKVG 160 (571)
Q Consensus 120 ~m~~~g--------------------------------------~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~g 160 (571)
++.... ..|+....... .+.|.+.+++++|+.++..+.+.+
T Consensus 133 ~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~ 212 (987)
T PRK09782 133 ELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN 212 (987)
T ss_pred HHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC
Confidence 544321 12223323333 566777788888888888888876
Q ss_pred CCCchhHHHHHHHHHHh-CCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 008276 161 LDYNLFNGNGLVAMYGK-CGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK-PDADTMASLL 238 (571)
Q Consensus 161 ~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll 238 (571)
+.+......|..+|.. .++ +++..+++...+.+...+..++..+.+.|+.++|.++++++...-.. |...++..++
T Consensus 213 -pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l 290 (987)
T PRK09782 213 -TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL 290 (987)
T ss_pred -CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH
Confidence 3445556666667777 366 77777776544567788889999999999999999999988654322 5555554444
Q ss_pred HHhcCCCCcc----------------------------------------------------------------------
Q 008276 239 PSVTNTSPEN---------------------------------------------------------------------- 248 (571)
Q Consensus 239 ~~~~~~~~~~---------------------------------------------------------------------- 248 (571)
.-........
T Consensus 291 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~ 370 (987)
T PRK09782 291 SKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQ 370 (987)
T ss_pred HhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHh
Confidence 3332221000
Q ss_pred ---------------------HHHHHHHHhhCCC--CC----hhhHHHHHHHHHHcCC---chHH---------------
Q 008276 249 ---------------------VLSVKEMFLKLDN--KN----LVSWNVMIAVYANNSM---PAEA--------------- 283 (571)
Q Consensus 249 ---------------------~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~g~---~~~A--------------- 283 (571)
.+.|..+++...+ ++ ...-..++..|.+.+. ..++
T Consensus 371 ~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 450 (987)
T PRK09782 371 QEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQW 450 (987)
T ss_pred cCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHH
Confidence 3334444444332 11 1123345555555543 2222
Q ss_pred -------HHHHHHHHHC-CC-CC--CHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 008276 284 -------VDLYLQMEVH-GI-EP--NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352 (571)
Q Consensus 284 -------~~~~~~m~~~-g~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (571)
...+...... +. ++ +...+..+..++.. ++.++|...+....... |+......+...+...|++++
T Consensus 451 ~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYAT 527 (987)
T ss_pred HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHH
Confidence 2223333221 12 23 55666666666665 78888888777777654 444443344555568899999
Q ss_pred HHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008276 353 ARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS-IAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429 (571)
Q Consensus 353 a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 429 (571)
|...|+.+.. |+...+..+...+.+.|++++|...+++..+.. |+. ..+..+...+...|++++|...+++..+.
T Consensus 528 Ai~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l 605 (987)
T PRK09782 528 ALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI 605 (987)
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999987654 445556677778888999999999999888753 433 33444444555669999999999988754
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 008276 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507 (571)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 507 (571)
.|+...+..+..++.+.|+.++|+..+++. ...| +...+..+..++...|++++|+..++++++..|+++.++..
T Consensus 606 ---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 606 ---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 566778888888999999999999999887 5566 56677778888888999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 508 LSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 508 l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
++.++...|++++|+..+++..+..
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999998887554
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=3.1e-22 Score=187.15 Aligned_cols=442 Identities=17% Similarity=0.158 Sum_probs=321.4
Q ss_pred hHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHHHc
Q 008276 32 DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYVNN 108 (571)
Q Consensus 32 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 108 (571)
..|++-+-+.|++.+|.+--..+- ..+ +.+....-.+-..+.+..+.++...--....+ .-..+|..+...+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~-~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVG-QED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhh-ccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 334444555555555555333332 221 22222223333344444444432222111111 1234666677777777
Q ss_pred CChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhCCCHHHHHHH
Q 008276 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL-FNGNGLVAMYGKCGCLKEARRV 187 (571)
Q Consensus 109 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 187 (571)
|++.+|+.+|+.+.+.. +-....|..+..++...|+.+.|.+.|.+.++. .|+. -..+.+...+...|++++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 77777777777776642 224456666666677777777777777666654 2332 2333445555566777777666
Q ss_pred HccCCC--CC-chhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCCh
Q 008276 188 LNDMPS--KD-VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL 264 (571)
Q Consensus 188 ~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~ 264 (571)
|.+..+ |. ...|+.|...+...|+...|+..|++..+- .|+ =.
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~--------------------------------f~ 252 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPN--------------------------------FL 252 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCc--------------------------------ch
Confidence 665543 32 345667777777777777777777766542 332 14
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 008276 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN-AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343 (571)
Q Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 343 (571)
.+|-.|...|-..+.+++|+..|.+.... .|+ ...+..+...|...|.++.|+..|++.++.. +.-...|+.|..+
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanA 329 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANA 329 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHH
Confidence 57888999999999999999999888764 555 4677778888999999999999999999875 4446789999999
Q ss_pred HHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHH
Q 008276 344 YAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEG 419 (571)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a 419 (571)
+...|++.+|...+..... | .....+.|...|...|.+++|..+|....+ +.|.-. ..+.|...|-.+|++++|
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHH
Confidence 9999999999999998875 3 456789999999999999999999999998 777654 788999999999999999
Q ss_pred HHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 420 RYYFKIMTEQYKLVPRI-EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-ERIWGSLVAACCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 420 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (571)
+..|++.. .+.|+. ..|+.+...|...|+.+.|...+.+. .+.|. ...++.|...|...|+..+|+..|+.+++
T Consensus 408 i~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 408 IMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 99999998 567776 78999999999999999999999887 77774 56889999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHhcCCHHH
Q 008276 497 LAPNQSGYYVLLSNIYAKAGRWGD 520 (571)
Q Consensus 497 ~~p~~~~~~~~l~~~~~~~g~~~~ 520 (571)
+.|+.+.+|..++.++.-..+|.+
T Consensus 485 lkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 485 LKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred cCCCCchhhhHHHHHHHHHhcccc
Confidence 999999999999988776665554
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=9.5e-20 Score=188.47 Aligned_cols=416 Identities=11% Similarity=-0.004 Sum_probs=296.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 008276 98 FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK 177 (571)
Q Consensus 98 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 177 (571)
+......+.+.|++++|+..|++..+. .|+...|..+..++.+.|++++|...++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 456677888999999999999998874 6788888888888999999999999999988764 4456788889999999
Q ss_pred CCCHHHHHHHHccCCCC---CchhHHHHHHHHHhCCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHHhcCCCCccHHHH
Q 008276 178 CGCLKEARRVLNDMPSK---DVVTWNSMVAGYAQNGRFDEALDVCREMESLR--IKPDADTMASLLPSVTNTSPENVLSV 252 (571)
Q Consensus 178 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~~~a 252 (571)
.|++++|+..|..+... +......++..+.. ..+........+.. ..|........+..+..... .
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~--- 277 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPR--P--- 277 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcc--h---
Confidence 99999998877654321 11111111211111 12222222222221 11222111111111110000 0
Q ss_pred HHHHhhCCCCC---hhhHHHHHHHH---HHcCCchHHHHHHHHHHHCC-CCC-CHHHHHHHHHHhccCCchHHHHHHHHH
Q 008276 253 KEMFLKLDNKN---LVSWNVMIAVY---ANNSMPAEAVDLYLQMEVHG-IEP-NAISVASVLPACGDLSALLLGRKIHRY 324 (571)
Q Consensus 253 ~~~~~~~~~~~---~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~g-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 324 (571)
.-+....+.+ ...+..+...+ ...+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++.
T Consensus 278 -~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 278 -AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred -hhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0011111111 11121221111 23478999999999998765 233 345677777788899999999999999
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H
Q 008276 325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-S 400 (571)
Q Consensus 325 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~ 400 (571)
..+.. +.....|..+...+...|++++|...|+.+.+ .+...|..+...+...|++++|+..|++.++. .|+ .
T Consensus 357 al~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~ 433 (615)
T TIGR00990 357 SIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFI 433 (615)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCH
Confidence 99875 34466788888899999999999999998764 35678999999999999999999999999984 554 5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HH-------H
Q 008276 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNE-RI-------W 471 (571)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~-------~ 471 (571)
..+..+...+.+.|++++|...|+...+. .+.+...++.+..++...|++++|++.|++. ...|+. .. +
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 57778888899999999999999999873 4556788889999999999999999999986 444421 11 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 472 GSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
+..+..+...|++++|...++++++++|++..++..++.++...|++++|++++++..+.
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 112222334699999999999999999999999999999999999999999999998654
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=6.8e-21 Score=178.27 Aligned_cols=420 Identities=14% Similarity=0.126 Sum_probs=303.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 008276 99 NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC 178 (571)
Q Consensus 99 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 178 (571)
..|..-..+.|++++|.+.-...-+.+ +.+......+-..+.+..+++...+.-....+.. +.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 334445555666666665544433321 1222222223333444444444443333333221 23345566666666666
Q ss_pred CCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC-CCCccHHHHHH
Q 008276 179 GCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN-TSPENVLSVKE 254 (571)
Q Consensus 179 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~~~a~~ 254 (571)
|++++|+..++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++ +.|+.....+-+..+.+ .|. +.++..
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Gr--l~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGR--LEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcc--cchhHH
Confidence 666666666665554 2345566666666666666666666665554 23443332222221111 122 444444
Q ss_pred HHhhCCC--CC-hhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCchHHHHHHHHHHHHcCC
Q 008276 255 MFLKLDN--KN-LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN-AISVASVLPACGDLSALLLGRKIHRYVERKKL 330 (571)
Q Consensus 255 ~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 330 (571)
.+.+..+ |. ..+|+.|...+-.+|+...|+..|++..+. .|+ ...|..+...|...+.++.|...|.......
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 4443332 22 467999999999999999999999998874 554 4678888889999999999999999888764
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 008276 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QD-VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS-IAFVSV 406 (571)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l 406 (571)
+.....+..+...|...|.++.|+..+++..+ |+ ...|+.|..++-..|+..+|...|.+.+. ..|+. ...+.|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHH
Confidence 44556777788889999999999999999875 44 45899999999999999999999999998 56654 488899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 008276 407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-ERIWGSLVAACCLYSN 483 (571)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~ 483 (571)
...+...|.+++|.++|....+ +.|.. ...+.|...|-.+|++++|+.-+++. .++|+ ...|+.+...|-..|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 9999999999999999999885 34544 67899999999999999999999988 88885 6689999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 484 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
.+.|++.+.+++..+|.-..++..|+.+|...|+..+|+.-+++...-.
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999887543
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=2e-18 Score=181.84 Aligned_cols=442 Identities=10% Similarity=-0.032 Sum_probs=296.7
Q ss_pred hhcCCChHHHHHHHcccCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHH
Q 008276 74 YGACGQMVDTRHVFDEITN--K-NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGL 150 (571)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 150 (571)
+...|++++|+..|+...+ | +..++..|...|.+.|++++|+..+++..+. .|+...|..++..+ +++++|.
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHH
Confidence 3345999999999998865 3 5678899999999999999999999999985 56666665555333 8899999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHH--------HHhCCCHHHHHHHHccCCCC--CchhHHHH-HHHHHhCCCchHHHHHH
Q 008276 151 QIHCSVVKVGLDYNLFNGNGLVAM--------YGKCGCLKEARRVLNDMPSK--DVVTWNSM-VAGYAQNGRFDEALDVC 219 (571)
Q Consensus 151 ~~~~~~~~~g~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~a~~~~ 219 (571)
.+++++.+.. +-+..++..+... |.+.++..+++. .....+ +..+.... ...|.+.|++++|++++
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 9999999875 4455566656655 666666666666 333333 34444444 88999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcCC-CCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHH--------
Q 008276 220 REMESLRIKPDADTMASLLPSVTNT-SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-------- 290 (571)
Q Consensus 220 ~~m~~~g~~p~~~t~~~ll~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-------- 290 (571)
.++.+.+... ..-...+-.++... +. +.+..+++...+.+...+..++..|.+.|+.++|..+++++
T Consensus 206 ~~L~k~~pl~-~~~~~~L~~ay~q~l~~---~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 206 NEARQQNTLS-AAERRQWFDVLLAGQLD---DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHHHhcCCCC-HHHHHHHHHHHHHhhCH---HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 9998875333 22222222233321 11 22222222222223333333333333333333333333222
Q ss_pred --------------------------------------------------------------------------------
Q 008276 291 -------------------------------------------------------------------------------- 290 (571)
Q Consensus 291 -------------------------------------------------------------------------------- 290 (571)
T Consensus 282 ~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 282 QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEA 361 (987)
T ss_pred ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHH
Confidence
Q ss_pred -----------------------------------------HHC--CCCCCHHHHHHHHHHhccCCc---hHHHH-----
Q 008276 291 -----------------------------------------EVH--GIEPNAISVASVLPACGDLSA---LLLGR----- 319 (571)
Q Consensus 291 -----------------------------------------~~~--g~~~~~~~~~~ll~~~~~~~~---~~~a~----- 319 (571)
... ...++......++..+.+.+. ...+.
T Consensus 362 ~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 362 LRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 210 001111122233444444333 11111
Q ss_pred -----------------HHHHHHHHc-CC-CC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHH
Q 008276 320 -----------------KIHRYVERK-KL-QP--NLRLENALVDMYAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYG 376 (571)
Q Consensus 320 -----------------~~~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~ 376 (571)
......... +. ++ +...+..+..++.. ++.++|...+..... |+......+...+.
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~ 520 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAY 520 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 111112111 11 33 56677777777776 889899997776653 55444334455556
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008276 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456 (571)
Q Consensus 377 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 456 (571)
..|++++|...|+++.. ..|+...+..+...+...|++++|..+++...+. .++....+..+...+.+.|++++|.
T Consensus 521 ~~Gr~eeAi~~~rka~~--~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 521 QVEDYATALAAWQKISL--HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HCCCHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHH
Confidence 89999999999999866 3555556667778889999999999999999874 2333344444445555679999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 457 DLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 457 ~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
..+++. ...|+...|..+..++.+.|++++|+..++++++++|+++.++..++.++...|++++|+..+++..+..
T Consensus 597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 597 NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999988 6778888999999999999999999999999999999999999999999999999999999999987654
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.8e-20 Score=184.36 Aligned_cols=282 Identities=11% Similarity=0.034 Sum_probs=198.2
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC---HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 008276 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN---AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341 (571)
Q Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (571)
.++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|..+|+.+.+.. +.+..++..++
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la 148 (389)
T PRK11788 70 ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLL 148 (389)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 3444555555555666666666655554321111 1334455555555666666666666655442 33445556666
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--CC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 008276 342 DMYAKCGSLTEARTVFDQMRC--QD------VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413 (571)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~--~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 413 (571)
..+.+.|++++|.+.++.+.+ |+ ...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 149 EIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHC
Confidence 666666666666666666543 11 1134567777888999999999999998842 22355777888899999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008276 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAAD 492 (571)
Q Consensus 414 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 492 (571)
|++++|.++++++.+. .-......+..++.+|...|++++|.+.++++ ...|+...+..++..+.+.|++++|...++
T Consensus 228 g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 228 GDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred CCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999864 21112356788999999999999999999988 557777777888999999999999999999
Q ss_pred HHHhhCCCCchhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCCceE-EEECCEEEEE
Q 008276 493 HIFHLAPNQSGYYVLLSNIYAK---AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550 (571)
Q Consensus 493 ~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~~~~~~~~ 550 (571)
++.+..|++.. +..+...+.. .|+.++|..++++|.++++.++|.+. ...+.....|
T Consensus 307 ~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~~cg~~~~~~ 367 (389)
T PRK11788 307 EQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCRNCGFTARTL 367 (389)
T ss_pred HHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECCCCCCCCccc
Confidence 99999997764 4444444443 56999999999999999999999987 5565555554
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=3.8e-18 Score=176.60 Aligned_cols=425 Identities=11% Similarity=-0.002 Sum_probs=278.4
Q ss_pred hHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHHHc
Q 008276 32 DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYVNN 108 (571)
Q Consensus 32 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 108 (571)
...+..+-+.|+++.|...|.+.+ +. .|++..|..+..+|.+.|++++|++.++...+ .+...|..+..++...
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al-~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAI-EC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-hc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 345666777777777777777766 43 34566677777777777777777777766544 2444677777777777
Q ss_pred CChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHH
Q 008276 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL 188 (571)
Q Consensus 109 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 188 (571)
|++++|+.-|......+ ..+......++..+.. ..+........+.. +.+...+..+...+ .....+....-+
T Consensus 208 g~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchhhh
Confidence 77777777766554432 1111111111111111 11222222222221 22222222222211 111111111111
Q ss_pred ccCCCCCc---hhHHHHHHH---HHhCCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCC
Q 008276 189 NDMPSKDV---VTWNSMVAG---YAQNGRFDEALDVCREMESLR-IKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN 261 (571)
Q Consensus 189 ~~~~~~~~---~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 261 (571)
+...+.+. ..+..+... ....+++++|.+.|++..+.+ ..|+
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~------------------------------- 329 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEK------------------------------- 329 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChh-------------------------------
Confidence 11111111 111111111 122456777887777776643 1222
Q ss_pred CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 008276 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN-AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340 (571)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 340 (571)
....|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+
T Consensus 330 -~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l 405 (615)
T TIGR00990 330 -EAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHR 405 (615)
T ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3456778888899999999999999999875 444 5678888888899999999999999998875 5567888889
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCH
Q 008276 341 VDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLL 416 (571)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~ 416 (571)
...+...|++++|...|+...+ | +...+..+...+.+.|++++|+..|++.++. .| +...+..+...+...|++
T Consensus 406 g~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCH
Confidence 9999999999999999998875 3 5667888889999999999999999999884 45 466888899999999999
Q ss_pred HHHHHHHHHHHHhcCCC-C---CH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 008276 417 EEGRYYFKIMTEQYKLV-P---RI-EHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGIL 489 (571)
Q Consensus 417 ~~a~~~~~~~~~~~~~~-~---~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 489 (571)
++|...|+...+...-. + +. ..++.....+...|++++|.+++++. ...| +...+..+...+.+.|++++|+.
T Consensus 484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 99999999987641110 1 11 11222223344579999999999986 5566 45578889999999999999999
Q ss_pred HHHHHHhhCCCCch
Q 008276 490 AADHIFHLAPNQSG 503 (571)
Q Consensus 490 ~~~~~~~~~p~~~~ 503 (571)
.|+++.++.+....
T Consensus 564 ~~e~A~~l~~~~~e 577 (615)
T TIGR00990 564 LFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHhccHHH
Confidence 99999998875443
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2.1e-19 Score=176.71 Aligned_cols=302 Identities=12% Similarity=0.026 Sum_probs=210.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhC
Q 008276 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN---LFNGNGLVAMYGKC 178 (571)
Q Consensus 102 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~ 178 (571)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344566777888888888887752 22344667777777788888888888877776432211 24567778888888
Q ss_pred CCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHH
Q 008276 179 GCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM 255 (571)
Q Consensus 179 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~ 255 (571)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 888888888888765 3556788888888888888888888888876543221100
Q ss_pred HhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChh
Q 008276 256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR 335 (571)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 335 (571)
....+..+...+.+.|++++|..+|+++.+.. +.+...+..+...+...|++++|.++++.+.+.+......
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 01234566777788888888888888887653 2345566667777888888888888888887664333345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-
Q 008276 336 LENALVDMYAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH- 412 (571)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~- 412 (571)
+++.++.+|...|++++|...++.+.+ |+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhc
Confidence 566777777788888888877777653 5555667777777778888888888877777 35777777766666553
Q ss_pred --CCCHHHHHHHHHHHHHhcCCCCCHH
Q 008276 413 --AGLLEEGRYYFKIMTEQYKLVPRIE 437 (571)
Q Consensus 413 --~~~~~~a~~~~~~~~~~~~~~~~~~ 437 (571)
.|+.+++..+++.+.+. ++.|++.
T Consensus 329 ~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred cCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 44777777777777765 5555554
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=3.8e-18 Score=175.89 Aligned_cols=230 Identities=13% Similarity=0.001 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 008276 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345 (571)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 345 (571)
.+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+....++......+..++.
T Consensus 146 a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~ 223 (656)
T PRK15174 146 IFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC 223 (656)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 3444444455555555555555544433211 11111111 224444555555555555444332222233333344555
Q ss_pred hcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHH
Q 008276 346 KCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYD----AVALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLE 417 (571)
Q Consensus 346 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~ 417 (571)
..|++++|...++.... .+...+..+...+...|++++ |...|++..+ ..|+ ...+..+...+...|+++
T Consensus 224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHH
Confidence 55555555555555443 234445555666666666654 5666666666 3343 335666666666666777
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERI-WGSLVAACCLYSNMDIGILAADHIF 495 (571)
Q Consensus 418 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~ 495 (571)
+|...++++.+. .+.+...+..+..++.+.|++++|...++++ ...|+... +..+..++...|+.++|+..|+++.
T Consensus 302 eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 302 KAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 776666666653 2233445555666666667777776666665 33444322 2333455666677777777777776
Q ss_pred hhCCCC
Q 008276 496 HLAPNQ 501 (571)
Q Consensus 496 ~~~p~~ 501 (571)
+..|++
T Consensus 380 ~~~P~~ 385 (656)
T PRK15174 380 QARASH 385 (656)
T ss_pred HhChhh
Confidence 666654
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=5.2e-18 Score=178.73 Aligned_cols=406 Identities=8% Similarity=-0.010 Sum_probs=203.6
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 008276 63 NPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA 139 (571)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 139 (571)
++....-.+.+....|+.++|++++..... .+...+..+...+.+.|++++|+.+|++..+.. +.+...+..+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444455566666666777777777666543 233346666666777777777777777766541 2233444555555
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC--C-CchhHHHHHHHHHhCCCchHHH
Q 008276 140 CSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS--K-DVVTWNSMVAGYAQNGRFDEAL 216 (571)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~ 216 (571)
+...|++++|...++++++.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+...+...|..++|+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 666666666666666666552 33344 55566666666666666666666554 2 3334444555555566666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCC
Q 008276 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE 296 (571)
Q Consensus 217 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 296 (571)
..++.... .|+... .. .......++......+.
T Consensus 171 ~~l~~~~~---~p~~~~------------------~l---------~~~~~~~~~r~~~~~~~----------------- 203 (765)
T PRK10049 171 GAIDDANL---TPAEKR------------------DL---------EADAAAELVRLSFMPTR----------------- 203 (765)
T ss_pred HHHHhCCC---CHHHHH------------------HH---------HHHHHHHHHHhhccccc-----------------
Confidence 65554432 221000 00 00011111111111100
Q ss_pred CCHHHHHHHHHHhccCCch---HHHHHHHHHHHHc-CCCCChh-HH----HHHHHHHHhcCCHHHHHHHHhhCCCCC---
Q 008276 297 PNAISVASVLPACGDLSAL---LLGRKIHRYVERK-KLQPNLR-LE----NALVDMYAKCGSLTEARTVFDQMRCQD--- 364 (571)
Q Consensus 297 ~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 364 (571)
...+++ +.|...++.+.+. ...|+.. .+ ...+.++...|++++|...|+.+.+.+
T Consensus 204 -------------~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~ 270 (765)
T PRK10049 204 -------------SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQII 270 (765)
T ss_pred -------------ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCC
Confidence 111112 3344444444432 1111110 00 000122334455555555555554311
Q ss_pred h-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC---------
Q 008276 365 V-VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP---DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK--------- 431 (571)
Q Consensus 365 ~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------- 431 (571)
+ .....+...|...|++++|+..|+++.+..... .......+..++...|++++|..+++.+.+...
T Consensus 271 P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~ 350 (765)
T PRK10049 271 PPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSP 350 (765)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCC
Confidence 1 111123445555666666666666555421110 012334444455556666666666665554210
Q ss_pred -CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 008276 432 -LVPR---IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505 (571)
Q Consensus 432 -~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 505 (571)
-.|+ ...+..++..+...|++++|+++++++ ...| +...+..+...+...|++++|++.+++++++.|++...+
T Consensus 351 ~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~ 430 (765)
T PRK10049 351 TSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLE 430 (765)
T ss_pred CCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 0112 123344555666666666666666665 3333 455566666666666666666666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 506 VLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 506 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
...+..+...|++++|..+++++.+.
T Consensus 431 ~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 431 VEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 66666666666666666666666543
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=3.6e-18 Score=179.95 Aligned_cols=417 Identities=10% Similarity=-0.008 Sum_probs=290.6
Q ss_pred ccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHH
Q 008276 25 QYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVL 101 (571)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 101 (571)
+-++.-..=.+.+....|+.++|.+++.... ... +.+...+..+...+...|++++|.++|+.... .+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~-~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYR-VHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3444444456777888999999999999887 422 44566789999999999999999999998543 456778889
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH
Q 008276 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181 (571)
Q Consensus 102 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 181 (571)
+..+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...|..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 999999999999999999998862 33445 8788888999999999999999999875 44566667788889999999
Q ss_pred HHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCC
Q 008276 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN 261 (571)
Q Consensus 182 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 261 (571)
+.|+..++.... ++..... + +...+...+.... .+
T Consensus 167 e~Al~~l~~~~~-~p~~~~~-l-------~~~~~~~~~r~~~----~~-------------------------------- 201 (765)
T PRK10049 167 APALGAIDDANL-TPAEKRD-L-------EADAAAELVRLSF----MP-------------------------------- 201 (765)
T ss_pred HHHHHHHHhCCC-CHHHHHH-H-------HHHHHHHHHHhhc----cc--------------------------------
Confidence 999999988775 2221000 0 0001111111000 00
Q ss_pred CChhhHHHHHHHHHHcCCc---hHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHhccCCchHHHHHHHHHHHHcCCC-
Q 008276 262 KNLVSWNVMIAVYANNSMP---AEAVDLYLQMEVH-GIEPNAI-SVA----SVLPACGDLSALLLGRKIHRYVERKKLQ- 331 (571)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~-g~~~~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~- 331 (571)
.....+++ ++|++.++.+.+. ...|+.. .+. ..+..+...|++++|...|+.+.+.+.+
T Consensus 202 -----------~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~ 270 (765)
T PRK10049 202 -----------TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQII 270 (765)
T ss_pred -----------ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCC
Confidence 00111122 5566666666543 1122211 111 1122334556777777777777665422
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---------
Q 008276 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRC--QD-----VVSWTSMISAYGMSGQGYDAVALFSKMLMSG--------- 395 (571)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------- 395 (571)
|+. ....+..+|...|++++|...|+.+.+ |. ......+..++...|++++|..+++++.+..
T Consensus 271 P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~ 349 (765)
T PRK10049 271 PPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS 349 (765)
T ss_pred CHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC
Confidence 221 122245567777777777777777643 21 2335556667778888888888888877642
Q ss_pred --CCCCH---HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-H
Q 008276 396 --LCPDS---IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-E 468 (571)
Q Consensus 396 --~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~ 468 (571)
-.|+. ..+..+...+...|++++|++.++++.. ..+.+...+..++..+...|++++|++.++++ ...|+ .
T Consensus 350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~ 427 (765)
T PRK10049 350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI 427 (765)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Confidence 12332 2455677788899999999999999987 44566788899999999999999999999988 66774 6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 008276 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505 (571)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 505 (571)
..+...+..+...|++++|+..++++++..|+++.+.
T Consensus 428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 428 NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 6677777788899999999999999999999988543
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.2e-17 Score=164.81 Aligned_cols=503 Identities=11% Similarity=0.043 Sum_probs=284.9
Q ss_pred ccccccCChhHHHHHHhhCCChHHHHHHHHHHHH-hhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHH
Q 008276 23 STQYTLLSGDACNDILDKYPDIKTLKKLHAQIII-NQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL 101 (571)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 101 (571)
..|++.+.+---+.+.-..+++..|+..|..++. ....+||+ ...+..++.+.|+.+.|+..|.+..+-|+..-+++
T Consensus 159 ~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~al 236 (1018)
T KOG2002|consen 159 QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFERALQLDPTCVSAL 236 (1018)
T ss_pred hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHHHHHhcChhhHHHH
Confidence 3455555554445555556788888888887551 22334443 34455667778888888877776655333222222
Q ss_pred HHH---HHH---cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCC--CchhHHHHHHH
Q 008276 102 IRS---YVN---NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD--YNLFNGNGLVA 173 (571)
Q Consensus 102 i~~---~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~ 173 (571)
+.. -.. ...+..++.++...-... +-++...+.|.+-+.-.|+++.+..+...+...... .-...|--+.+
T Consensus 237 v~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 237 VALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGR 315 (1018)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 211 111 112333444444433221 224444455555555555555555555555443211 11122344555
Q ss_pred HHHhCCCHHHHHHHHccCCC--CCc--hhHHHHHHHHHhCCCchHHHHHHHHHHHCC-----------------------
Q 008276 174 MYGKCGCLKEARRVLNDMPS--KDV--VTWNSMVAGYAQNGRFDEALDVCREMESLR----------------------- 226 (571)
Q Consensus 174 ~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----------------------- 226 (571)
+|-..|++++|...|-+..+ ++. ..+--+...+.+.|+.+.+...|+...+..
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~ 395 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEK 395 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHH
Confidence 55555555555555544433 111 122334455555555555555555554421
Q ss_pred --------------CCCCHHHHHHHHHHhcCCCCcc----HHHHHHHH-hhCCCCChhhHHHHHHHHHHcCCchHHHHHH
Q 008276 227 --------------IKPDADTMASLLPSVTNTSPEN----VLSVKEMF-LKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287 (571)
Q Consensus 227 --------------~~p~~~t~~~ll~~~~~~~~~~----~~~a~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 287 (571)
...|...|..+-..+-....+. +..|.+++ ..+.+.-+...|.+...+...|++.+|...|
T Consensus 396 ~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 396 RDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 0112222222222222211111 22233222 2222344555666666666667777777766
Q ss_pred HHHHHC---CCCCCH------HHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 008276 288 LQMEVH---GIEPNA------ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358 (571)
Q Consensus 288 ~~m~~~---g~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 358 (571)
+..... -..+|. .+--.+....-..++.+.|.+.|..+.+.. +--+..|..+..+....+...+|...+.
T Consensus 476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk 554 (1018)
T KOG2002|consen 476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLK 554 (1018)
T ss_pred HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHH
Confidence 665543 111222 122233444455566667777777666653 2222333333323333456667777777
Q ss_pred hCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhc------------CCCHHHHHHH
Q 008276 359 QMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMS-GLCPDSIAFVSVLSACSH------------AGLLEEGRYY 422 (571)
Q Consensus 359 ~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~------------~~~~~~a~~~ 422 (571)
.+.. .++..++.+...+.....+..|.+-|+...+. ...+|..+...|...|.. .+..+.|+++
T Consensus 555 ~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~ 634 (1018)
T KOG2002|consen 555 DALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQL 634 (1018)
T ss_pred HHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 6653 46666777777777777777777766655543 123566665555554432 2346778888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--
Q 008276 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA-- 498 (571)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 498 (571)
|.++.+ ..+-|...-+.+.-.++..|++.+|..+|.+. .......+|..+..+|...|++..|+++|+...+..
T Consensus 635 y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~ 712 (1018)
T KOG2002|consen 635 YGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK 712 (1018)
T ss_pred HHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888776 44567777788888999999999999999988 223356788899999999999999999999988855
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 499 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
.+++.+...|+.++.+.|++.+|.+.+....+.
T Consensus 713 ~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 713 KNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 567788899999999999999999888766544
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=4.5e-18 Score=175.31 Aligned_cols=325 Identities=13% Similarity=-0.003 Sum_probs=258.6
Q ss_pred HHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCC
Q 008276 170 GLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP 246 (571)
Q Consensus 170 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 246 (571)
.++..+.+.|++++|..+++.... .+...+..++.+....|++++|+..|+++... .|+
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~---------------- 108 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVC---------------- 108 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCC----------------
Confidence 345556677777777777776653 24445666667777788888888888888763 343
Q ss_pred ccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 008276 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326 (571)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 326 (571)
+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++.+.
T Consensus 109 ----------------~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 109 ----------------QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred ----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 45667778889999999999999999998753 3346677888889999999999999999887
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008276 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ----DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402 (571)
Q Consensus 327 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 402 (571)
..... +...+..+ ..+...|++++|...++.+.+. +...+..+...+...|++++|+..++++.+.. +.+...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 76533 33333333 3478899999999999987652 33345556778899999999999999999853 234557
Q ss_pred HHHHHHHhhcCCCHHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 008276 403 FVSVLSACSHAGLLEE----GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVA 476 (571)
Q Consensus 403 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 476 (571)
+..+...+...|++++ |...|+++.+. .+.+...+..+...+...|++++|...+++. ...| +...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8888899999999986 89999999863 3446678899999999999999999999988 5566 5667788889
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008276 477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534 (571)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 534 (571)
++...|++++|+..++++.+.+|.+...+..++.++...|++++|...+++..+....
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 9999999999999999999999998877777888999999999999999998766533
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=3.3e-16 Score=161.84 Aligned_cols=445 Identities=11% Similarity=0.023 Sum_probs=293.0
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhh-HHHH--HHHHHHcCC
Q 008276 34 CNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF-FNVL--IRSYVNNYL 110 (571)
Q Consensus 34 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l--i~~~~~~~~ 110 (571)
-+-+..+.|+++.|...+.+.. +..+.-.+.++ .++..+...|+.++|+..+++...|+... +..+ ...+...|+
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL-~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEES-KAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHH-hhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 3444567777777777777777 54433212333 67777777788888888777776653333 3333 346666678
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHcc
Q 008276 111 YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND 190 (571)
Q Consensus 111 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 190 (571)
+++|+++|+++.+.. +-++..+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 888888888777652 223455556666677777777777777777654 34444444444444445566557777777
Q ss_pred CCC--C-CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhH
Q 008276 191 MPS--K-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSW 267 (571)
Q Consensus 191 ~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 267 (571)
+.+ | +...+..+..++.+.|-...|+++..+-... +.+. ....+- .+.+.+..+....++..-
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~--~~~~l~----------~~~~a~~vr~a~~~~~~~- 260 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAE--HYRQLE----------RDAAAEQVRMAVLPTRSE- 260 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHH--HHHHHH----------HHHHHHHHhhcccccccc-
Confidence 764 3 4455666777777777777777665542110 1111 111100 111222221111000000
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 008276 268 NVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNA-I----SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341 (571)
Q Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (571)
-. +---.+.|+.-++.+... +..|.. . ...-.+.++...++..++++.|+.+...+.+....+-..+.
T Consensus 261 ---~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 261 ---TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred ---hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 00 000235566666666542 222322 1 22234556788899999999999999888665666778899
Q ss_pred HHHHhcCCHHHHHHHHhhCCCC---------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCCH-
Q 008276 342 DMYAKCGSLTEARTVFDQMRCQ---------DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL-----------CPDS- 400 (571)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~~- 400 (571)
++|...+++++|..+|+.+..+ +......|.-+|...+++++|..+++++.+.-. .||.
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 9999999999999999987542 223356788899999999999999999987311 1332
Q ss_pred -H-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 008276 401 -I-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVA 476 (571)
Q Consensus 401 -~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 476 (571)
. .+..++..+...|++.+|++.++.+.. .-+-|......+...+...|.+.+|++.++.. ...| +..+....+.
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence 2 345567778899999999999999976 55678888999999999999999999999877 5567 5567777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 008276 477 ACCLYSNMDIGILAADHIFHLAPNQSGYY 505 (571)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 505 (571)
++...+++++|..+.+.+.+..|+++.+-
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 88899999999999999999999988543
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.1e-15 Score=151.28 Aligned_cols=461 Identities=15% Similarity=0.087 Sum_probs=322.2
Q ss_pred CChhHHHHHHHHhhcCCChHHHHHHHcccCCCC------hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCccc--H
Q 008276 62 SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN------VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYT--Y 133 (571)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~--~ 133 (571)
.+|.+.+.|.+.|...|+++.+..+...+...+ ..+|..+.++|-..|++++|...|.+..+. .|+.+. +
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 356666777777777777777777766554321 234666777777777777777777776654 344433 3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC----CHHHHHHHHccCCCC---CchhHHHHHHHH
Q 008276 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG----CLKEARRVLNDMPSK---DVVTWNSMVAGY 206 (571)
Q Consensus 134 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~ 206 (571)
.-+...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++....++ |...|-.+...+
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445566777777777777777777653 444556666666666554 455666666655543 445565555555
Q ss_pred HhCCCchHHHHHHHHHH----HCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCC-------CCh------hhHHH
Q 008276 207 AQNGRFDEALDVCREME----SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN-------KNL------VSWNV 269 (571)
Q Consensus 207 ~~~g~~~~a~~~~~~m~----~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~-------~~~------~~~~~ 269 (571)
... +...++.+|.... ..+-.+.....|.+-......|. ++.|...|+.... ++. ..-..
T Consensus 425 e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~--~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 425 EQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGN--IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred Hhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC--hHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 544 4444476665543 45555777777777777777776 7777776665431 222 12334
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 008276 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAI-SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348 (571)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (571)
+...+-..++++.|.+.|..+.+. .|+-. .|..+.......+...+|...++.+...+ ..++..++.+...+.+..
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhh
Confidence 566677788999999999999875 45543 34444433445578888999999888764 556666666777888888
Q ss_pred CHHHHHHHHhhCCC-----CChhHHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 008276 349 SLTEARTVFDQMRC-----QDVVSWTSMISAYGM------------SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411 (571)
Q Consensus 349 ~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 411 (571)
++..|.+-|+.+.+ +|+.+.-.|...|.+ .+..++|+++|.+.+... +-|...-+.+.-.++
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLA 657 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhh
Confidence 88888886655542 455555555554432 345788999999998852 336677788888899
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHH
Q 008276 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM----PMEPNERIWGSLVAACCLYSNMDIG 487 (571)
Q Consensus 412 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A 487 (571)
..|++..|..+|....+.. .....+|-.+..+|..+|++-.|+++|+.. ..+.+......|.+++.+.|++.+|
T Consensus 658 ~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred hccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999999862 345567888999999999999999999977 3345788899999999999999999
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCC
Q 008276 488 ILAADHIFHLAPNQSGYYVLLSNIYAKA-------------------GRWGDVKRVRKFMNSKGIK 534 (571)
Q Consensus 488 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~m~~~~~~ 534 (571)
...+..+....|.++...+.++.+..+. +..+.|.++|.+|...+-.
T Consensus 736 k~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 736 KEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999998877776655443 4567788888888776543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=4e-15 Score=153.91 Aligned_cols=398 Identities=10% Similarity=-0.008 Sum_probs=289.7
Q ss_pred hhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC--C-ChhhHHHHHHHHHH
Q 008276 31 GDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--K-NVVFFNVLIRSYVN 107 (571)
Q Consensus 31 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~ 107 (571)
..-++.++...|+.++|...+++.. ... +........+...|...|++++|+++|+.+.+ | |+..+..++..+..
T Consensus 71 v~dll~l~~~~G~~~~A~~~~eka~-~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~ 148 (822)
T PRK14574 71 VDDWLQIAGWAGRDQEVIDVYERYQ-SSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD 148 (822)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHhc-cCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Confidence 3377888888899999999999876 221 12233334446788899999999999999875 3 56677788899999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 008276 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187 (571)
Q Consensus 108 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 187 (571)
.++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. +.+...+..+..++.+.|-...|.++
T Consensus 149 ~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 149 AGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred cCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999875 5676666555455555667767999999999985 55778888899999999999999999
Q ss_pred HccCCCC-CchhHH----HHHHHHHhCCC------------chHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHH
Q 008276 188 LNDMPSK-DVVTWN----SMVAGYAQNGR------------FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL 250 (571)
Q Consensus 188 ~~~~~~~-~~~~~~----~li~~~~~~g~------------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~ 250 (571)
..+-+.- +...+. ..+.-.++.+. .+.|+.-++.+
T Consensus 226 ~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l---------------------------- 277 (822)
T PRK14574 226 AKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL---------------------------- 277 (822)
T ss_pred HHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH----------------------------
Confidence 8876531 111111 11111121110 11122222222
Q ss_pred HHHHHHhhCCC-CCh-----hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHH
Q 008276 251 SVKEMFLKLDN-KNL-----VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY 324 (571)
Q Consensus 251 ~a~~~~~~~~~-~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 324 (571)
+..... |.. ....-.+-++...|++.++++.|+.+...|.+....+-..+..+|...+.+++|..+++.
T Consensus 278 -----~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 278 -----LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred -----HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 211111 111 112234567888999999999999999888776677888999999999999999999999
Q ss_pred HHHcC-----CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-------------Ch---hHHHHHHHHHHhcCCh
Q 008276 325 VERKK-----LQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-------------DV---VSWTSMISAYGMSGQG 381 (571)
Q Consensus 325 ~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-------------~~---~~~~~li~~~~~~~~~ 381 (571)
+.... .+++......|..+|...+++++|..+++.+.+ | |. ..+..++..+...|+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 87643 123344457888999999999999999998864 2 11 1245567788999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 008276 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461 (571)
Q Consensus 382 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (571)
.+|++.++++... -+-|......+...+...|.+.+|...++.... -.+-+..+....+.++...|++++|..+.+.
T Consensus 433 ~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 433 PTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999884 334677888899999999999999999977764 2233456777888999999999999999877
Q ss_pred C-CCCCCHH
Q 008276 462 M-PMEPNER 469 (571)
Q Consensus 462 ~-~~~p~~~ 469 (571)
+ ...|+..
T Consensus 510 l~~~~Pe~~ 518 (822)
T PRK14574 510 VISRSPEDI 518 (822)
T ss_pred HHhhCCCch
Confidence 7 4445443
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.1e-14 Score=131.22 Aligned_cols=422 Identities=13% Similarity=0.128 Sum_probs=216.6
Q ss_pred ccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCC--ChHHH-HHHH--------------
Q 008276 25 QYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACG--QMVDT-RHVF-------------- 87 (571)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A-~~~~-------------- 87 (571)
+..+.+-+.|+++ .+.|.+.++.-++..|. +.|.+.++.+...|++.-+..+ ++--| .+.|
T Consensus 113 ~~~V~~E~nL~km-IS~~EvKDs~ilY~~m~-~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW 190 (625)
T KOG4422|consen 113 PLQVETENNLLKM-ISSREVKDSCILYERMR-SENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW 190 (625)
T ss_pred chhhcchhHHHHH-HhhcccchhHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc
Confidence 3344556666664 45688889999999999 8998888888877776544322 11111 1122
Q ss_pred ---------cccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHH
Q 008276 88 ---------DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK 158 (571)
Q Consensus 88 ---------~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 158 (571)
-+.......+|..+|.++++-...++|.++|++......+.+..+||.+|.+-.- ...++++.+|..
T Consensus 191 K~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMis 266 (625)
T KOG4422|consen 191 KSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMIS 266 (625)
T ss_pred ccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHH
Confidence 2222235567888888888888888888888888777777888888888876432 233778888888
Q ss_pred hCCCCchhHHHHHHHHHHhCCCHHHHHHHH----ccCC----CCCchhHHHHHHHHHhCCCchH-HHHHHHHHHH----C
Q 008276 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVL----NDMP----SKDVVTWNSMVAGYAQNGRFDE-ALDVCREMES----L 225 (571)
Q Consensus 159 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~ 225 (571)
....||..|+|+++.+..+.|+++.|.+.+ .+|+ +|...+|..+|..+++.++..+ +..++.+... +
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 888888888888888888888777665432 2222 2444555555555555444322 2223332222 1
Q ss_pred CCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCC----CCCCH--
Q 008276 226 RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG----IEPNA-- 299 (571)
Q Consensus 226 g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~~~~-- 299 (571)
.++|- .+.|...|..-+..|.+..+.+.|.++-.-+.... +.|+.
T Consensus 347 ~fkp~-----------------------------~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~ 397 (625)
T KOG4422|consen 347 TFKPI-----------------------------TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHR 397 (625)
T ss_pred cccCC-----------------------------CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHH
Confidence 11110 01122333344444444444444444433222110 11111
Q ss_pred -HHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 008276 300 -ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS 378 (571)
Q Consensus 300 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 378 (571)
.-|..+....+.....+.....|+.|.-.-+-|+..+...++++..-.+.++-..+++..+.. |...
T Consensus 398 ~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~------------~ght 465 (625)
T KOG4422|consen 398 NFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE------------YGHT 465 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH------------hhhh
Confidence 223333333344444444444444444444444444444444444444444444444443321 1111
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhhcCCCHHHHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008276 379 GQGYDAVALFSKMLMSGLCPDSI---AFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454 (571)
Q Consensus 379 ~~~~~a~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (571)
-+-+--++++..|......|+.. -+.....-|.. ++.++. ..-.++. .........+..+-.+.+.|+.++
T Consensus 466 ~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qk 540 (625)
T KOG4422|consen 466 FRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQK 540 (625)
T ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHH
Confidence 11122223333333332333222 11111111110 111111 1112222 222334445666666777777777
Q ss_pred HHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 008276 455 AYDLIKQM-------PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498 (571)
Q Consensus 455 A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 498 (571)
|.++|.-+ +..|.......++....+.++...|...++-+...+
T Consensus 541 A~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 541 AWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 77766544 233444444455566666777777777777775544
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=3.7e-14 Score=127.92 Aligned_cols=510 Identities=14% Similarity=0.111 Sum_probs=339.1
Q ss_pred eeccccCCCcchhhhhhcccccc-CChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCCh--HH
Q 008276 6 LLCRHFSTTKPVQALVLSTQYTL-LSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQM--VD 82 (571)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~ 82 (571)
-..||..+..|....-+.+||.. .+..-|+++++..--.+.....|..+- ..-.-|.+ ++-=+.|.-...+ ..
T Consensus 6 ~~~~~~ss~~PA~~~~l~I~~~IERSPTDLL~ALs~TV~~D~TAPH~~Y~D-DP~~IP~t---~stKkTY~MaKE~GkrA 81 (625)
T KOG4422|consen 6 VITRSLSSVEPALSQKLTIQPAIERSPTDLLNALSETVGPDTTAPHFAYID-DPITIPST---QSTKKTYFMAKEFGKRA 81 (625)
T ss_pred ccchhccccCccccCCccCCchhccChHHHHHHHHHhhCCCCCCcchhccC-CCcccccc---hhHHHHHHHHHHHhHHH
Confidence 34566677777766666666543 455667777776644443333444332 11111121 2222222211111 22
Q ss_pred HHHHHcccCC---------------------C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 008276 83 TRHVFDEITN---------------------K-NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC 140 (571)
Q Consensus 83 A~~~~~~~~~---------------------~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 140 (571)
|+.+-.+.+. | .+.+-|.|+. +...|...++.-+|+.|...|++.+...-..|++..
T Consensus 82 Ar~l~~E~~~LF~~~~~QP~l~~F~P~~l~~~~~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV 160 (625)
T KOG4422|consen 82 ARELATEWPTLFAFDRDQPQLPVFRPRHLADPLQVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLV 160 (625)
T ss_pred HHHHHHhchHhhhccccCccccccCchhcCCchhhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3333222211 2 2335556655 455678888889999999998877776665555543
Q ss_pred h--cCCChHHH-HHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHH
Q 008276 141 S--GSNSLLVG-LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217 (571)
Q Consensus 141 ~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 217 (571)
+ ...++.-+ .+.|-.|...| ..+..+| +.|++.+ ++-+...+...+|..||.++++-...+.|.+
T Consensus 161 ~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~ 228 (625)
T KOG4422|consen 161 TYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARE 228 (625)
T ss_pred HhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHH
Confidence 2 23333222 23333444433 2233333 3455444 4444445667899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchH----HHHHHHHHHHC
Q 008276 218 VCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE----AVDLYLQMEVH 293 (571)
Q Consensus 218 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~m~~~ 293 (571)
+|++......+.+..+||.+|.+.+-..+ -+...++...-..||..++|+++.+..+-|+++. |++++.+|++-
T Consensus 229 L~kE~~~~k~kv~~~aFN~lI~~~S~~~~--K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei 306 (625)
T KOG4422|consen 229 LYKEHRAAKGKVYREAFNGLIGASSYSVG--KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI 306 (625)
T ss_pred HHHHHHHhhheeeHHhhhhhhhHHHhhcc--HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 99999999899999999999998776655 5566667777778999999999999999998765 56888999999
Q ss_pred CCCCCHHHHHHHHHHhccCCchHH-HHHHHHHHHH----cCCC----CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 008276 294 GIEPNAISVASVLPACGDLSALLL-GRKIHRYVER----KKLQ----PNLRLENALVDMYAKCGSLTEARTVFDQMRC-- 362 (571)
Q Consensus 294 g~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 362 (571)
|+.|...+|..+|..+.+.++..+ +..+..++.. ..++ .+...|...+..|....+.+-|.++-.-+..
T Consensus 307 GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~ 386 (625)
T KOG4422|consen 307 GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD 386 (625)
T ss_pred CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 999999999999999988887644 3444444432 2222 2445666778888888898888887665542
Q ss_pred ------CC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 008276 363 ------QD---VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433 (571)
Q Consensus 363 ------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 433 (571)
++ ..-|..+....|+....+.-...|+.|.-.-+-|+..+...++++....+.++-.-++|..++.. |..
T Consensus 387 N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght 465 (625)
T KOG4422|consen 387 NWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHT 465 (625)
T ss_pred chhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhh
Confidence 22 23466778888899999999999999998878899999999999999999999999999988775 544
Q ss_pred CCHHHHHHHHHHHHhcC-CH--------HH-----HHHHHHh-------C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008276 434 PRIEHFACLVDLLGRAG-KV--------EE-----AYDLIKQ-------M-PMEPNERIWGSLVAACCLYSNMDIGILAA 491 (571)
Q Consensus 434 ~~~~~~~~l~~~~~~~g-~~--------~~-----A~~~~~~-------~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 491 (571)
-+.....-+...+++.. .. .. |..+++. + ..+-.....+..+-.+.+.|..++|.+++
T Consensus 466 ~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l 545 (625)
T KOG4422|consen 466 FRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEML 545 (625)
T ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHH
Confidence 44444444455555443 11 11 1112211 1 22334556677777788999999999999
Q ss_pred HHHHhhC---CCCch--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008276 492 DHIFHLA---PNQSG--YYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK 535 (571)
Q Consensus 492 ~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 535 (571)
.-..+.. |..+. +..-+.+.-........|..+++-|...+...
T Consensus 546 ~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 546 GLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred HHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 9886543 44433 34456666677888899999999997766543
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=2.6e-16 Score=142.63 Aligned_cols=468 Identities=13% Similarity=0.084 Sum_probs=311.2
Q ss_pred eccccCCCcchhhhhhccccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHH-HHHHHHhhcCCChHHHHH
Q 008276 7 LCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIG-LKLMRTYGACGQMVDTRH 85 (571)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~ 85 (571)
+-+|..+-....-+++.. |....-.|++.|....-..+|+..++.+. +...-|+.... ..+.+.+.+...+.+|++
T Consensus 182 lvk~req~~~~e~inldl--tfsvl~nlaqqy~~ndm~~ealntyeiiv-knkmf~nag~lkmnigni~~kkr~fskaik 258 (840)
T KOG2003|consen 182 LVKHREQQGLPEMINLDL--TFSVLFNLAQQYEANDMTAEALNTYEIIV-KNKMFPNAGILKMNIGNIHFKKREFSKAIK 258 (840)
T ss_pred HHHHHHhccchhhccccc--hHHHHHHHHHHhhhhHHHHHHhhhhhhhh-cccccCCCceeeeeecceeeehhhHHHHHH
Confidence 334444433333333332 23344557777777788899999999888 66666666544 356778888899999999
Q ss_pred HHcccCC--C--C----hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHH
Q 008276 86 VFDEITN--K--N----VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157 (571)
Q Consensus 86 ~~~~~~~--~--~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 157 (571)
.++-... | + ....+.+.-.+.+.|+++.|+..|+...+. .|+-.+-..|+-++..-|+-++..+.|..|+
T Consensus 259 fyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli 336 (840)
T KOG2003|consen 259 FYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLI 336 (840)
T ss_pred HHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHh
Confidence 8865433 2 2 224555556788999999999999987764 4776665555555666788899999999887
Q ss_pred HhCC------------CCchhHHHHHH-----HHHHhCCC--HHHHH----HHHccCCCCCchh---H----------HH
Q 008276 158 KVGL------------DYNLFNGNGLV-----AMYGKCGC--LKEAR----RVLNDMPSKDVVT---W----------NS 201 (571)
Q Consensus 158 ~~g~------------~~~~~~~~~l~-----~~~~~~g~--~~~A~----~~~~~~~~~~~~~---~----------~~ 201 (571)
..-. .|+....+.-+ .-+-+.++ -++++ ++..-+..|+-.. | ..
T Consensus 337 ~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~ 416 (840)
T KOG2003|consen 337 DIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAE 416 (840)
T ss_pred cCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhh
Confidence 6432 22222222221 11222111 11221 1111222222110 0 00
Q ss_pred --------HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHH-
Q 008276 202 --------MVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIA- 272 (571)
Q Consensus 202 --------li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~- 272 (571)
-..-+.++|+++.|++++.-..+..-+.-. .+-+.|-.
T Consensus 417 la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s---------------------------------aaa~nl~~l 463 (840)
T KOG2003|consen 417 LAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS---------------------------------AAANNLCAL 463 (840)
T ss_pred hhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH---------------------------------HHhhhhHHH
Confidence 112345566666666666555443211110 11112211
Q ss_pred HHHH-cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 008276 273 VYAN-NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351 (571)
Q Consensus 273 ~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (571)
-|.+ -.++..|.++-+..+... +-+......-.+.....|++++|...|++.+..+-......||. .-.+-..|+++
T Consensus 464 ~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ld 541 (840)
T KOG2003|consen 464 RFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLD 541 (840)
T ss_pred HHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHH
Confidence 2222 235666766666655332 33333333333445567899999999999887654444445553 33467789999
Q ss_pred HHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276 352 EARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428 (571)
Q Consensus 352 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 428 (571)
+|++.|-.+.. .+....-.+...|-...+...|++++.+.... ++.|+.....|...|-+.|+-.+|.+++-.--+
T Consensus 542 eald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr 620 (840)
T KOG2003|consen 542 EALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR 620 (840)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc
Confidence 99999877653 67777888888999999999999999887774 555677899999999999999999987655443
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCCchhHH
Q 008276 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACC-LYSNMDIGILAADHIFHLAPNQSGYYV 506 (571)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~ 506 (571)
-++-+..+..-|...|....-+++|+.+|++. -+.|+..-|..++..|. +.|++++|..+|+...+..|.+.....
T Consensus 621 --yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclk 698 (840)
T KOG2003|consen 621 --YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLK 698 (840)
T ss_pred --ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHH
Confidence 55677888888999999999999999999998 67899999999988876 599999999999999999999999999
Q ss_pred HHHHHHHhcCC
Q 008276 507 LLSNIYAKAGR 517 (571)
Q Consensus 507 ~l~~~~~~~g~ 517 (571)
.|+..+...|-
T Consensus 699 flvri~~dlgl 709 (840)
T KOG2003|consen 699 FLVRIAGDLGL 709 (840)
T ss_pred HHHHHhccccc
Confidence 99998888774
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=3.9e-12 Score=121.05 Aligned_cols=484 Identities=11% Similarity=0.028 Sum_probs=252.8
Q ss_pred ccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHH
Q 008276 27 TLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIR 103 (571)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 103 (571)
.+-+......+-.-..+...-.+++...+ + .+|.+...|.. .......++|+-++.+..+ .+...| -
T Consensus 345 ~P~Sv~lW~kA~dLE~~~~~K~RVlRKAL-e-~iP~sv~LWKa----AVelE~~~darilL~rAveccp~s~dLw----l 414 (913)
T KOG0495|consen 345 LPTSVRLWLKAADLESDTKNKKRVLRKAL-E-HIPRSVRLWKA----AVELEEPEDARILLERAVECCPQSMDLW----L 414 (913)
T ss_pred CCCChhhhhhHHhhhhHHHHHHHHHHHHH-H-hCCchHHHHHH----HHhccChHHHHHHHHHHHHhccchHHHH----H
Confidence 33444444444444444555555555554 2 23333333332 2233334445555544433 122222 3
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHH----HhCCCCchhHHHHHHH------
Q 008276 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV----KVGLDYNLFNGNGLVA------ 173 (571)
Q Consensus 104 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~l~~------ 173 (571)
+|++...|+.|..++++..+. ++.+...|.+....--..|+.+.+..+.++-+ ..|+..+...|-.=..
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 344444555555555555543 44444555444444444555555544443322 2344444444444444
Q ss_pred -------------------------------HHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHH
Q 008276 174 -------------------------------MYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVC 219 (571)
Q Consensus 174 -------------------------------~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~ 219 (571)
.|.+.+.++-|..+|....+ .+...|...+..--..|..++...+|
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 44444444444444443332 12333444443334444445555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCC---CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCC
Q 008276 220 REMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD---NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE 296 (571)
Q Consensus 220 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 296 (571)
++....- +-....|.......-..|+ +..++.++.... +.+...|-+-+.......++++|..+|.+... ..
T Consensus 574 qkav~~~-pkae~lwlM~ake~w~agd--v~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~s 648 (913)
T KOG0495|consen 574 QKAVEQC-PKAEILWLMYAKEKWKAGD--VPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--IS 648 (913)
T ss_pred HHHHHhC-CcchhHHHHHHHHHHhcCC--cHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence 5444421 1111112111222222222 444444444333 12334455555555555555566555555544 23
Q ss_pred CCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHH
Q 008276 297 PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMIS 373 (571)
Q Consensus 297 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~ 373 (571)
|+...|..-+..-.-.+..++|.+++++.++.- +.-...|..+.+.+-+.++++.|.+.|..-.+ | .+..|-.|..
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 444444444444444555555665555555432 22334455555555555566666555555443 3 2334555555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 008276 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453 (571)
Q Consensus 374 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (571)
.--+.|..-.|..++++.+-.+ +-|...|...++.-.+.|+.+.|..++.+..+ ..+.+...|.--|.+..+.++-.
T Consensus 728 leEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccch
Confidence 5555555666666666555532 22444555556665666666666666555554 33444455555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 454 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
...+.+++. +-|+.....+...+....+++.|.+-|.++.+.+|++..+|..+...+.+.|.-++-.++++......
T Consensus 805 ks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 805 KSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 555555554 34566667777788888999999999999999999999999999999999999999999999887654
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=4.2e-12 Score=125.54 Aligned_cols=492 Identities=13% Similarity=0.021 Sum_probs=331.9
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHccc---CCCChhhHHHHHHHHHHcC
Q 008276 33 ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI---TNKNVVFFNVLIRSYVNNY 109 (571)
Q Consensus 33 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~ 109 (571)
..++.+--.|++++|..++..++ +.. +.....|..|...|-..|+.+++...+-.. ...|...|-.+.....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvI-kqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVI-KQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH-HhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 34455555599999999999999 555 558889999999999999999999887544 3457788999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHH----HHHHHHHHhCCCHHHHH
Q 008276 110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG----NGLVAMYGKCGCLKEAR 185 (571)
Q Consensus 110 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~l~~~~~~~g~~~~A~ 185 (571)
++++|.-.|.+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-. -..+..+...++-+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999863 334444444556678999999999999999887532232222 33456677788889999
Q ss_pred HHHccCCC-----CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH--------------------------
Q 008276 186 RVLNDMPS-----KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM-------------------------- 234 (571)
Q Consensus 186 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-------------------------- 234 (571)
+.++.... -+...++.++..+.+...++.+......+......+|..-+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 99887765 24567899999999999999999998888763222222221
Q ss_pred HHHHHHhcCCCCccHHHHHHHHhhC----CCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 008276 235 ASLLPSVTNTSPENVLSVKEMFLKL----DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310 (571)
Q Consensus 235 ~~ll~~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 310 (571)
..+.-++.+........+..-+... ...+...|.-+.++|...|++.+|+.+|..+.....--+...|..+..++.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 1111222233322222222222111 123556788899999999999999999999987655556778999999999
Q ss_pred cCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh------------hHHHHHHHHHHhc
Q 008276 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV------------VSWTSMISAYGMS 378 (571)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~li~~~~~~ 378 (571)
..|..+.|...|+.++... +.+...-..|...+.+.|+.++|.+.++.+..||. .......+.+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999999875 55666777888999999999999999999876552 2223344566777
Q ss_pred CChHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHhhcCCCHHHHHHHHHHH-----HHhcC
Q 008276 379 GQGYDAVALFSKMLMSG----------------------LCPDSIAFVSVLSACSHAGLLEEGRYYFKIM-----TEQYK 431 (571)
Q Consensus 379 ~~~~~a~~~~~~m~~~g----------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~ 431 (571)
|+.++=+.+...|+... ..-.......++.+-.+.++..........- ....+
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 88777555544443311 1112223333344444444432222221111 11112
Q ss_pred CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHH---HH-HHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 008276 432 LVPRI--EHFACLVDLLGRAGKVEEAYDLIKQM----PMEPNER---IW-GSLVAACCLYSNMDIGILAADHIFHL---- 497 (571)
Q Consensus 432 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~---~~-~~l~~~~~~~g~~~~A~~~~~~~~~~---- 497 (571)
+..+. ..+.-++..+.+.+++++|+.+...+ .+..+.. .+ ...+.++...+++..|...++.++..
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~ 699 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY 699 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence 22222 34556777888899999999888766 1111222 22 33455566788999999988888876
Q ss_pred -CCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276 498 -APNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528 (571)
Q Consensus 498 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 528 (571)
+|.....|+.......+.|+-.-=.+.+...
T Consensus 700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~ 731 (895)
T KOG2076|consen 700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRL 731 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5655556665555555555544444444443
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=8.4e-14 Score=127.85 Aligned_cols=403 Identities=14% Similarity=0.071 Sum_probs=270.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHH
Q 008276 98 FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD-CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN-LFNGNGLVAMY 175 (571)
Q Consensus 98 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~ 175 (571)
+-....-|.++|++++|++.|.+..+. .|| +..|.....+|...|+|+++.+--...++. .|+ ...+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 444556788999999999999999985 688 677777788888999999999888877765 344 44566667788
Q ss_pred HhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHH---------HHHC--CCCCCHHHHHHHHHHhcCC
Q 008276 176 GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE---------MESL--RIKPDADTMASLLPSVTNT 244 (571)
Q Consensus 176 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~---------m~~~--g~~p~~~t~~~ll~~~~~~ 244 (571)
-..|++++|+.=+ +-.++...+....-.--+.+++.+ |.+. .+-|+.....+.+..+...
T Consensus 194 E~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 8888888876521 112222222222211222222221 1111 2335554444444443221
Q ss_pred CCccHHHHHHHHhhCCCCChhhHHHHHHHHHH--c---CCchHHHHHHHHHHHCC-CC-----CCHH----HHHHHHH--
Q 008276 245 SPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN--N---SMPAEAVDLYLQMEVHG-IE-----PNAI----SVASVLP-- 307 (571)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~m~~~g-~~-----~~~~----~~~~ll~-- 307 (571)
-.. ....+...+...+..++.. . ..+.+|.+.+.+-.... .. .|.. .-..++.
T Consensus 265 ~~~----------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gt 334 (606)
T KOG0547|consen 265 PKP----------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGT 334 (606)
T ss_pred ccc----------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhh
Confidence 110 0000111122222222111 1 13455555444322110 01 1111 1111222
Q ss_pred HhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHH
Q 008276 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDA 384 (571)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 384 (571)
-+.-.|+.-.+..-|+..++....+ ...|-.+..+|...++.++....|....+ .|+.+|..-.+.+.-.+++++|
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHH
Confidence 2344678888999999998876333 33477777889999999999999998875 4677888888888889999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 008276 385 VALFSKMLMSGLCPDS-IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM- 462 (571)
Q Consensus 385 ~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 462 (571)
..=|++.+. +.|+. ..|..+.-+..+.+.++++...|++.++ .++..+..|+...+.+..+++++.|.+.|+..
T Consensus 414 ~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 414 IADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 999999998 66654 4777777777889999999999999988 56677788899999999999999999999987
Q ss_pred CCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 463 PMEPN---------ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 463 ~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
.+.|+ +.+-..++-.-. .+++..|+.+++++++++|....+|..|+....+.|+.++|+++|++-.
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44443 222233333333 3899999999999999999999999999999999999999999998754
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=4.1e-14 Score=128.51 Aligned_cols=427 Identities=11% Similarity=0.085 Sum_probs=292.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHH-HHHHhhcCCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHH
Q 008276 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC-VLKACSGSNSLLVGLQIHCSVVKVGLDYNL----FNGNGLVAMY 175 (571)
Q Consensus 101 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~ 175 (571)
|...|..+..+.+|+..|+-+.+...-|+.-.+.. +-..+.+.+.+.+|+++++..+..-...+. ...+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 44566677788999999999988888888766533 334577889999999999988876322232 3344555567
Q ss_pred HhCCCHHHHHHHHccCCC--CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC------------CHHHHHHHHH--
Q 008276 176 GKCGCLKEARRVLNDMPS--KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP------------DADTMASLLP-- 239 (571)
Q Consensus 176 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p------------~~~t~~~ll~-- 239 (571)
.+.|+++.|+..|+...+ |+..+--.|+-++...|+.++..+.|.+|..-...| +....+..+.
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 889999999999998765 666554445556666899999999999998643333 3333333222
Q ss_pred ---HhcCCCCccHHHHH----HHHhhCCCCChhh---HH----------H--------HHHHHHHcCCchHHHHHHHHHH
Q 008276 240 ---SVTNTSPENVLSVK----EMFLKLDNKNLVS---WN----------V--------MIAVYANNSMPAEAVDLYLQME 291 (571)
Q Consensus 240 ---~~~~~~~~~~~~a~----~~~~~~~~~~~~~---~~----------~--------l~~~~~~~g~~~~A~~~~~~m~ 291 (571)
.+-+....+.+++. ++...+..|+... |. . -...|.+.|+++.|+++++-+.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 22222222223222 2222222332211 11 1 1235778899999999998877
Q ss_pred HCCCCCCHHHHHHHHHH--hccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHH
Q 008276 292 VHGIEPNAISVASVLPA--CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369 (571)
Q Consensus 292 ~~g~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 369 (571)
+..-+.-...-+.+-.. +.--.++..|.++-+..+..+ .-+......-.......|++++|.+.+++....|..+-.
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 65433322222222222 222336777777766665433 222222222223334568999999999999887766544
Q ss_pred HHHH---HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008276 370 SMIS---AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446 (571)
Q Consensus 370 ~li~---~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (571)
.|.. .+-..|+.++|++.|-++..- +.-+......+...|....+..+|++++-.... -++.|+.+...|.+.|
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLY 602 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHh
Confidence 4433 466789999999999988763 334666788888899999999999999988764 5677888999999999
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 008276 447 GRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV 524 (571)
Q Consensus 447 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 524 (571)
-+.|+-..|.+..-.- ..-| +..+..-|...|....=+++++..|+++.-+.|+.......++.++.+.|++..|.++
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999998875544 3334 6666666777788888899999999999989997776667777788889999999999
Q ss_pred HHHHHhC
Q 008276 525 RKFMNSK 531 (571)
Q Consensus 525 ~~~m~~~ 531 (571)
++....+
T Consensus 683 yk~~hrk 689 (840)
T KOG2003|consen 683 YKDIHRK 689 (840)
T ss_pred HHHHHHh
Confidence 9988654
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=9.6e-17 Score=149.32 Aligned_cols=257 Identities=14% Similarity=0.110 Sum_probs=114.4
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 008276 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI-SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347 (571)
Q Consensus 269 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (571)
.+...+.+.|++++|++++++......+|+.. .+..+...+...++++.|...++.+...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45778889999999999997655443234444 44445556777899999999999999876 3366677777777 788
Q ss_pred CCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhcCCCHHHHHHHHH
Q 008276 348 GSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG-LCPDSIAFVSVLSACSHAGLLEEGRYYFK 424 (571)
Q Consensus 348 ~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 424 (571)
+++++|..+++..-+ ++...+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999887643 567778888999999999999999999987643 34566788888899999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 008276 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS 502 (571)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 502 (571)
+..+. .+.+......++..+...|+.+++.++++.. ....|+..|..+..++...|++++|+..++++.+.+|+|+
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 99874 2345778889999999999999988888776 2234667788999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 503 GYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 503 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
.+...++.++...|+.++|.++.++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999988764
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=1.3e-11 Score=117.53 Aligned_cols=487 Identities=11% Similarity=0.061 Sum_probs=336.8
Q ss_pred hccccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhH
Q 008276 22 LSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFF 98 (571)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 98 (571)
.+.+-.+-+-+..+.++ |....+.|+.+....+ +. +|.++..|..-+..= .+...-.++++...+ .++..|
T Consensus 310 ~GCe~cprSeDvWLeai-RLhp~d~aK~vvA~Av-r~-~P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~iP~sv~LW 383 (913)
T KOG0495|consen 310 KGCEECPRSEDVWLEAI-RLHPPDVAKTVVANAV-RF-LPTSVRLWLKAADLE---SDTKNKKRVLRKALEHIPRSVRLW 383 (913)
T ss_pred HHHhhCCchHHHHHHHH-hcCChHHHHHHHHHHH-Hh-CCCChhhhhhHHhhh---hHHHHHHHHHHHHHHhCCchHHHH
Confidence 34444445555555544 4455667899998887 43 344555554443322 223333344444332 244455
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 008276 99 NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC 178 (571)
Q Consensus 99 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 178 (571)
.+.....+.+.|.-++.+..+. ++.+.. |..++++...++.|..+++...+. ++.+...|.+-...--..
T Consensus 384 ----KaAVelE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~n 453 (913)
T KOG0495|consen 384 ----KAAVELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEAN 453 (913)
T ss_pred ----HHHHhccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhc
Confidence 4455566778899999998875 333333 445667778899999999998765 677888888888888889
Q ss_pred CCHHHHHHHHccCCC--------CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcCCCCcc
Q 008276 179 GCLKEARRVLNDMPS--------KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD--ADTMASLLPSVTNTSPEN 248 (571)
Q Consensus 179 g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~ 248 (571)
|+.+...+++++-.. -+...|-.=...|-..|-.-.+..+....+.-|+... ..||..--..|.+.+.
T Consensus 454 gn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~-- 531 (913)
T KOG0495|consen 454 GNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA-- 531 (913)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch--
Confidence 999999998876432 2444565556667777777777777777777666543 2455555556666555
Q ss_pred HHHHHHHHhhCC---CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHH
Q 008276 249 VLSVKEMFLKLD---NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325 (571)
Q Consensus 249 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 325 (571)
++-++.++.... +.+...|......--..|..+....+|.+.... ++-....|......+-..|+...|..++..+
T Consensus 532 ~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~a 610 (913)
T KOG0495|consen 532 IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQA 610 (913)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 666666666554 345556766666666778888888888888765 2334455555556667778888888888888
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-H
Q 008276 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-A 402 (571)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~ 402 (571)
.+.. +.+...+..-+..-....+++.|..+|.+... +....|.--+...--.++.++|.+++++.++ .-|+.. .
T Consensus 611 f~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl 687 (913)
T KOG0495|consen 611 FEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKL 687 (913)
T ss_pred HHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHH
Confidence 8776 45777888888888888888888888887764 6666777666666677888888888888887 456654 7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 008276 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCL 480 (571)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 480 (571)
|..+.+.+...++.+.|...|..-.+ ..+..+..|-.|.+.-.+.|.+-.|..++++. -..| +...|...|..-.+
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELR 765 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 77777888888888888888776554 44555677888888888888888888888877 2234 77788888888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCC------------------------------chhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 481 YSNMDIGILAADHIFHLAPNQ------------------------------SGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 481 ~g~~~~A~~~~~~~~~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
.|+.+.|..+..++++.-|.+ +.....++..+....+++.|++.|.+...
T Consensus 766 ~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 766 AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888888888888777655544 44555666667777777777777777665
Q ss_pred CC
Q 008276 531 KG 532 (571)
Q Consensus 531 ~~ 532 (571)
.+
T Consensus 846 ~d 847 (913)
T KOG0495|consen 846 KD 847 (913)
T ss_pred cC
Confidence 54
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=4.8e-13 Score=132.01 Aligned_cols=321 Identities=13% Similarity=0.146 Sum_probs=216.5
Q ss_pred HHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHH
Q 008276 175 YGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS 251 (571)
Q Consensus 175 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~ 251 (571)
....|++++|.+++.++.. .+...|.+|..+|-+.|+.++++..+-.. ..+.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~--------------------- 205 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPK--------------------- 205 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCC---------------------
Confidence 3444777777777777764 24556777777777777777776554322 222232
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCC
Q 008276 252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ 331 (571)
Q Consensus 252 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 331 (571)
|...|..+.+...+.|.++.|.-+|.+.++.. +++...+.--...|-+.|+...|..-|.++.....+
T Consensus 206 -----------d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 206 -----------DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred -----------ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 44556666666677777777777777776654 344444444555666777777777777777665432
Q ss_pred CChhHHH----HHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-------
Q 008276 332 PNLRLEN----ALVDMYAKCGSLTEARTVFDQMRC-----QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG------- 395 (571)
Q Consensus 332 ~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------- 395 (571)
.|..-+. ..+..+...++-+.|.+.++.... -+...++.++..+.+...++.|......+....
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e 353 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE 353 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh
Confidence 2322222 234455566666777777666553 244457777777777777777777776665511
Q ss_pred --------------------CCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHH
Q 008276 396 --------------------LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL--VPRIEHFACLVDLLGRAGKVE 453 (571)
Q Consensus 396 --------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 453 (571)
+.++... ..+.-++.+....+....+...+.+. .+ .-+...|.-+.++|...|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~ 431 (895)
T KOG2076|consen 354 WDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYK 431 (895)
T ss_pred hhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHH
Confidence 2222222 12223334444444444444444443 43 335578899999999999999
Q ss_pred HHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 454 EAYDLIKQM-PME--PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 454 ~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
+|+.+|..+ ... .+...|--+...|...|.+++|++.|++++...|++..+...|+..+.+.|+.++|.+.+..|..
T Consensus 432 ~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 432 EALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 999999998 222 25668999999999999999999999999999999999999999999999999999999998874
Q ss_pred CC
Q 008276 531 KG 532 (571)
Q Consensus 531 ~~ 532 (571)
.+
T Consensus 512 ~D 513 (895)
T KOG2076|consen 512 PD 513 (895)
T ss_pred CC
Confidence 44
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=9.3e-11 Score=107.74 Aligned_cols=489 Identities=14% Similarity=0.065 Sum_probs=345.9
Q ss_pred hhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC--CCh-hhHHHHHHHHHH
Q 008276 31 GDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--KNV-VFFNVLIRSYVN 107 (571)
Q Consensus 31 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~ 107 (571)
|-..++.-...++++.|..+|++.+ ... ..+...|...+.+=.++..+.-|+.+|++... |.+ ..|...+..--.
T Consensus 76 WikYaqwEesq~e~~RARSv~ERAL-dvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERAL-DVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH-hcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3444555566678888999999888 444 56788888888888888999999999987654 322 246666666677
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 008276 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187 (571)
Q Consensus 108 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 187 (571)
.|+...|.++|+...+. +|+...|.+.|+--.+-+..+.|..+++..+-. .|++..|-.....--++|....|..+
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 79999999999998874 799999999999988999999999999988764 58899998888888999999999999
Q ss_pred HccCCC--C----CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCc-cHHHHHHHHhhC
Q 008276 188 LNDMPS--K----DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD-ADTMASLLPSVTNTSPE-NVLSVKEMFLKL 259 (571)
Q Consensus 188 ~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~-~~~~a~~~~~~~ 259 (571)
|+...+ . +...+.+....-..+..++.|.-+|.-.++.=.+.. ...|.....-=-+.|+. .++.+.---.++
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 987764 1 223455555555667778888888887776522211 12222222221222221 133332222222
Q ss_pred -----C---CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH-------HHHHHHHHHh---ccCCchHHHHHH
Q 008276 260 -----D---NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA-------ISVASVLPAC---GDLSALLLGRKI 321 (571)
Q Consensus 260 -----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~ll~~~---~~~~~~~~a~~~ 321 (571)
. +.|-.+|-..++.-...|+.+...++|+..+.. ++|-. ..|.-+--+| ....+.+.+.++
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 1 345567777778888889999999999999864 55532 2232222222 346789999999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHH----HhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008276 322 HRYVERKKLQPNLRLENALVDMY----AKCGSLTEARTVFDQMR--CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395 (571)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 395 (571)
|+..++. ++....+|..+--+| .++.++..|.+++.... .|-..+|...|..-.+.+++|.+..+|++.++.
T Consensus 389 yq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~- 466 (677)
T KOG1915|consen 389 YQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF- 466 (677)
T ss_pred HHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 9999883 566667776554444 46789999999998876 388889999999999999999999999999995
Q ss_pred CCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 008276 396 LCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGS 473 (571)
Q Consensus 396 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 473 (571)
.| |..+|......-...|+.+.|..+|..+.....+......|.+.|+--...|.++.|..+++++ ...+....|-+
T Consensus 467 -~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWis 545 (677)
T KOG1915|consen 467 -SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWIS 545 (677)
T ss_pred -ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHh
Confidence 44 5668888888778899999999999999875333334456777777778899999999999988 44555567776
Q ss_pred HHHHHH-----hcC-----------CHHHHHHHHHHHHhhC--CCCchhHHHHHHH----HHhcCCHHHHHHHHHHHH
Q 008276 474 LVAACC-----LYS-----------NMDIGILAADHIFHLA--PNQSGYYVLLSNI----YAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 474 l~~~~~-----~~g-----------~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~----~~~~g~~~~A~~~~~~m~ 529 (571)
+..--. +.+ +...|..+|+++.... .....-...|..+ -...|...+...+-+.|.
T Consensus 546 FA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 546 FAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 665433 333 5668888888887633 1112233333333 334566666666666554
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.3e-11 Score=113.03 Aligned_cols=257 Identities=10% Similarity=0.092 Sum_probs=208.5
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhc
Q 008276 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL--QPNLRLENALVDMYAKC 347 (571)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 347 (571)
+..++....+.+++.+-.......|.+.+...-+....+.....++++|+.+|+++.+.+. -.|..+|+.++-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 4456667778888888888888888776666666666677788999999999999998742 12566777665433322
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHH
Q 008276 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIM 426 (571)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 426 (571)
.++.---...-.+.+--+.|..++...|.-.++.++|..+|+..++ +.|... .|+.+..-|....+...|.+.++.+
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 2222222222233344566778888899999999999999999999 556544 7888888899999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 008276 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY 504 (571)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 504 (571)
.+ -.+.|-..|..|..+|.-.+...-|+-.|++. ..+| |+..|.+|...|.+.++.++|++.|.++...+..+..+
T Consensus 391 vd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred Hh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 86 34567789999999999999999999999998 7778 88999999999999999999999999999999888899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 505 YVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 505 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
+..|+++|.+.++.++|..++++..+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999988875
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=3.4e-13 Score=128.97 Aligned_cols=275 Identities=12% Similarity=0.036 Sum_probs=218.7
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHHhccCCchHHHHHHH-
Q 008276 249 VLSVKEMFLKLDN---KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG--IEPNAISVASVLPACGDLSALLLGRKIH- 322 (571)
Q Consensus 249 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~- 322 (571)
...|...|.+... ........+..+|...+++++|..+|+.+++.. ..-+..+|.+.+-.+-+ +-+...+
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 5666667766442 233556678899999999999999999998742 11255777777755422 2222333
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 008276 323 RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ---DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399 (571)
Q Consensus 323 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 399 (571)
+.+.+.. +..+.+|.++..+|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.|.
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 2333333 667899999999999999999999999998863 456888888888999999999999999877 5665
Q ss_pred HH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 008276 400 SI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVA 476 (571)
Q Consensus 400 ~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 476 (571)
.. .|..+...|.+.++++.|+-.|+++.+. .+.+......+...+.+.|+.|+|+.+++++ ..+| |+..--.-+.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 54 8888899999999999999999999853 2335566778888999999999999999998 5555 5555555667
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
.+...+++++|+..++++.+.-|++..++..++..|.+.|+.+.|+.-|.-+.+-+
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 77789999999999999999999999999999999999999999999998887654
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1.2e-13 Score=132.02 Aligned_cols=247 Identities=14% Similarity=0.114 Sum_probs=199.5
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHHHHHHH
Q 008276 279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK--LQPNLRLENALVDMYAKCGSLTEARTV 356 (571)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (571)
+..+|+..|.++... +.-+......+..+|...+++++++++|+.+.+.. ...+..+|.+.+--+-+.-.+..--+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 578899999985443 34445677778889999999999999999998753 123566777666433332222221122
Q ss_pred HhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 008276 357 FDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435 (571)
Q Consensus 357 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 435 (571)
+-.+....+.+|.++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+.... +.|.
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~~~r 487 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---VDPR 487 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---CCch
Confidence 2222335778999999999999999999999999998 677 566898888888899999999999998873 3443
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276 436 I-EHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512 (571)
Q Consensus 436 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 512 (571)
. ..|..+...|.++++++.|+-.|+++ .+.| +.+....+...+.+.|+.++|+.+++++..++|.++-.-+..+..+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 3 56777889999999999999999998 8888 6667777888899999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 008276 513 AKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~~ 531 (571)
...+++++|+..++++++-
T Consensus 568 ~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKEL 586 (638)
T ss_pred HhhcchHHHHHHHHHHHHh
Confidence 9999999999999999865
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=7.1e-11 Score=108.30 Aligned_cols=256 Identities=13% Similarity=0.073 Sum_probs=199.7
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCC--CCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 008276 268 NVMIAVYANNSMPAEAVDLYLQMEVHGI--EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA 345 (571)
Q Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 345 (571)
+....+.-...+++.|+.+|+++++... --|..+|+.++-.-.....+ .++..-...--+-.+.|...+.+-|.
T Consensus 266 ~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL----s~LA~~v~~idKyR~ETCCiIaNYYS 341 (559)
T KOG1155|consen 266 TQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL----SYLAQNVSNIDKYRPETCCIIANYYS 341 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH----HHHHHHHHHhccCCccceeeehhHHH
Confidence 3344455667899999999999988631 12567887777554332222 12211111111344567777888899
Q ss_pred hcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHH
Q 008276 346 KCGSLTEARTVFDQMRCQ---DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRY 421 (571)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~ 421 (571)
-.++.++|...|+...+- ....|+.+.+-|...++...|++-|+.+++ +.| |...|..|.++|.-.+...-|+-
T Consensus 342 lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLy 419 (559)
T KOG1155|consen 342 LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALY 419 (559)
T ss_pred HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHH
Confidence 999999999999998863 345799999999999999999999999999 445 77799999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---
Q 008276 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFH--- 496 (571)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 496 (571)
+|++..+ --+.|...|.+|.++|.+.++.++|++-|... .-+.+...+..|...|-+.++.++|...|++.++
T Consensus 420 YfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~ 497 (559)
T KOG1155|consen 420 YFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE 497 (559)
T ss_pred HHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999986 34557789999999999999999999999988 2244668899999999999999999999999887
Q ss_pred ----hCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 497 ----LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 497 ----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
.+|....+...|+.-+.+.+++++|..+.......
T Consensus 498 ~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 498 LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 33545556667888889999999999887766544
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1.9e-10 Score=105.72 Aligned_cols=454 Identities=10% Similarity=0.056 Sum_probs=326.1
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCc-ccHHHHHH
Q 008276 63 NPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDC-YTYPCVLK 138 (571)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~li~ 138 (571)
+...|....+-=...+++..|+.+|++... ++...|-.-+..-.++.....|..+|+..... -|-. ..|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence 455666666666677899999999998876 56778888899999999999999999998764 3332 23444444
Q ss_pred HhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCC--CCCchhHHHHHHHHHhCCCchHHH
Q 008276 139 ACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP--SKDVVTWNSMVAGYAQNGRFDEAL 216 (571)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~ 216 (571)
.--..|++..|.++|+.-.. ..|+...|.+.++.-.+-..++.|..+++... .|++.+|--....-.+.|+...|.
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 44567999999999998776 58999999999999999999999999999876 589999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcCC--CCccHHHHHHHHhhCC----CCC-hhhHHHHHHHHHHcCCchHHHHH---
Q 008276 217 DVCREMESLRIKPDADTMASLLPSVTNT--SPENVLSVKEMFLKLD----NKN-LVSWNVMIAVYANNSMPAEAVDL--- 286 (571)
Q Consensus 217 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~~~a~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~A~~~--- 286 (571)
.+|+...+. -.|...-..++.+++.- .....+.+.-+++-.. ... ...|..+...--+-|+.....+.
T Consensus 228 ~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 228 SVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 999988764 22333334444444332 2233566666554433 211 23344333333334443333222
Q ss_pred -----HHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCCh--hHHHHHH-----HH---HHhcCCHH
Q 008276 287 -----YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL--RLENALV-----DM---YAKCGSLT 351 (571)
Q Consensus 287 -----~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~-----~~---~~~~~~~~ 351 (571)
|+.++..+ +.|-.+|--.+..-...|+.+...++|+.++..- +|-. ..|...| .+ =....+.+
T Consensus 306 KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 306 KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33444433 5577778778887788899999999999988753 3421 1121111 11 13467888
Q ss_pred HHHHHHhhCCC--C-ChhH----HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHH
Q 008276 352 EARTVFDQMRC--Q-DVVS----WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424 (571)
Q Consensus 352 ~a~~~~~~~~~--~-~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 424 (571)
.+.++|+...+ | ...| |-.......++.+...|.+++...+. .-|-..+|...|..-.+.++++.+..+++
T Consensus 384 rtr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 384 RTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88888887765 3 2333 44445555678899999999987665 78888899999998889999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP----NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500 (571)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 500 (571)
+..+ -.+.+..+|......-...|+.+.|..+|.-+-..| -...|.+.|.--...|.++.|..+|+++++..+-
T Consensus 462 kfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 462 KFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 9986 334466888888888889999999999998773234 3446777777777899999999999999998864
Q ss_pred CchhHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 008276 501 QSGYYVLLSNIYA-----KAG-----------RWGDVKRVRKFMN 529 (571)
Q Consensus 501 ~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~ 529 (571)
. ..|.+.+..-. +.| ....|..+|++..
T Consensus 540 ~-kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 540 V-KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred c-hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 3 37777766544 344 5667788887765
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=8.5e-12 Score=121.54 Aligned_cols=219 Identities=10% Similarity=-0.065 Sum_probs=115.8
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChh-------HHHHHHHH
Q 008276 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR-------LENALVDM 343 (571)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~ 343 (571)
...+...|+++.|...++++.+.. +-+......+...|.+.|+++++..++..+.+.+..++.. .|..++..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 345566666777777666666543 3344555556666666666666666666666654332211 12222222
Q ss_pred HHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHH
Q 008276 344 YAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420 (571)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 420 (571)
.....+.+...++++.+.+ .++.....+...+...|+.++|.+.+++..+ ..|+.... ++.+....++.+++.
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al 314 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLE 314 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHH
Confidence 2233344444555555442 3445555556666666666666666665555 23333221 122223345566666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (571)
+..+...+ ..+-|+..+..+...+.+.|++++|.+.|++. ...|+...+..+...+.+.|+.++|...+++...
T Consensus 315 ~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 315 KVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66655554 22334444555556666666666666666555 4455555555555555556666666555555544
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=5.8e-12 Score=122.73 Aligned_cols=251 Identities=8% Similarity=-0.018 Sum_probs=197.2
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHH--HHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 008276 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA--SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347 (571)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (571)
...+..+.|+++.|.+++.++.+. .|+..... .....+...|+++.|...++.+.+.. +.+......+...|.+.
T Consensus 124 aA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 124 AAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence 345557899999999999999874 55554333 33567888999999999999999887 56678888899999999
Q ss_pred CCHHHHHHHHhhCCCC---Chh--------HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCH
Q 008276 348 GSLTEARTVFDQMRCQ---DVV--------SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL 416 (571)
Q Consensus 348 ~~~~~a~~~~~~~~~~---~~~--------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~ 416 (571)
|++++|.+++..+.+. +.. .|..++.......+.+...++++.+.+. .+.+......+...+...|+.
T Consensus 201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~ 279 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDH 279 (398)
T ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCH
Confidence 9999999999988752 111 3334444444555667777777776543 445777888899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276 417 EEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHI 494 (571)
Q Consensus 417 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (571)
++|..++++..+. +|+.... ++.+....++.+++++.+++. ...| |+..+..+...|.+.+++++|...|+++
T Consensus 280 ~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a 354 (398)
T PRK10747 280 DTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAA 354 (398)
T ss_pred HHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998763 5555432 334444569999999999887 5566 5667888999999999999999999999
Q ss_pred HhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 495 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
.+..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 355 l~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 355 LKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999864 5677899999999999999999997654
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=8.1e-11 Score=108.60 Aligned_cols=224 Identities=11% Similarity=-0.010 Sum_probs=177.0
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 008276 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351 (571)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (571)
.-+.-.|+.-.|..-|+..+.....++. .|..+...|....+.++..+.|....+.+ +.++.+|..-.+.+.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 3455678999999999999886544433 37677778899999999999999999887 567777877778888889999
Q ss_pred HHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276 352 EARTVFDQMRCQ---DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428 (571)
Q Consensus 352 ~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 428 (571)
+|..=|++...- ++..|-.+..+.-+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+..++
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999998863 4455666666667889999999999999885 555567999999999999999999999999875
Q ss_pred hcCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 008276 429 QYKL------VPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499 (571)
Q Consensus 429 ~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 499 (571)
.-.. .+.+.+-..++-.-.+ +++..|..++.+. .++| ....|..|...-.+.|+.++|+++|++...+-.
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4111 1122223333333333 8999999999988 7777 566899999999999999999999999887654
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=1.4e-11 Score=121.43 Aligned_cols=422 Identities=14% Similarity=0.065 Sum_probs=247.0
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 008276 92 NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGL 171 (571)
Q Consensus 92 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 171 (571)
.||.+||.++|.-|+..|+.+.|- +|.-|.-+..+.+...|+.++.+....++.+.+. .|-..+|..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 467778888888888888877777 7777776666667777777777777777766554 5667778888
Q ss_pred HHHHHhCCCHHH---HHHHHccCCC---C----CchhHHHHHHHHHhCCCchHHHHH-----HHH----HHHCC-CCCCH
Q 008276 172 VAMYGKCGCLKE---ARRVLNDMPS---K----DVVTWNSMVAGYAQNGRFDEALDV-----CRE----MESLR-IKPDA 231 (571)
Q Consensus 172 ~~~~~~~g~~~~---A~~~~~~~~~---~----~~~~~~~li~~~~~~g~~~~a~~~-----~~~----m~~~g-~~p~~ 231 (571)
..+|...||+.. .++.++.+.. + ....|- ++...+.-+-...|... ++. ..+.+ ..|..
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~f-l~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWF-LMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHH-HhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 888888877654 2221111111 0 111111 12211111212222111 111 11111 11211
Q ss_pred H---HHHHHHHHhcCCCCccHHHHHHHHhhCCC-CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008276 232 D---TMASLLPSVTNTSPENVLSVKEMFLKLDN-KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307 (571)
Q Consensus 232 ~---t~~~ll~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 307 (571)
. ++..+++-+.... ..+++...+.+...+ +++.+|.+++++-...|+.+.|..++.+|.+.|.+.+..-|..++-
T Consensus 169 a~~~p~~vfLrqnv~~n-tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~ 247 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDN-TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLL 247 (1088)
T ss_pred cccchHHHHHHHhccCC-chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhh
Confidence 1 1111233332222 125666666666655 8999999999999999999999999999999999999988888876
Q ss_pred HhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH------------------------HHHhh----
Q 008276 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR------------------------TVFDQ---- 359 (571)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~------------------------~~~~~---- 359 (571)
+ .++...++.+++.|.+.|+.|+..|+...+..+...|....+. +.++.
T Consensus 248 g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~ 324 (1088)
T KOG4318|consen 248 G---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRK 324 (1088)
T ss_pred c---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHH
Confidence 6 7888888999999999999999998876655555433321111 00000
Q ss_pred -----CCC-------CChhHHHHHHHHHHhcCChHH--------------------------HHHHHHHHHHC-------
Q 008276 360 -----MRC-------QDVVSWTSMISAYGMSGQGYD--------------------------AVALFSKMLMS------- 394 (571)
Q Consensus 360 -----~~~-------~~~~~~~~li~~~~~~~~~~~--------------------------a~~~~~~m~~~------- 394 (571)
.++ .....|...+.. ..+|+-+. +..+|.+....
T Consensus 325 ~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~ 403 (1088)
T KOG4318|consen 325 SVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYY 403 (1088)
T ss_pred HHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 000 001112211111 11111111 11222222111
Q ss_pred ----------------------CCCCCHH----------------------------HHHHHHHHhhcCCCHHHHHHHHH
Q 008276 395 ----------------------GLCPDSI----------------------------AFVSVLSACSHAGLLEEGRYYFK 424 (571)
Q Consensus 395 ----------------------g~~p~~~----------------------------~~~~l~~~~~~~~~~~~a~~~~~ 424 (571)
...||.. .-+.++..|+..-+..+++..-+
T Consensus 404 ~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~e 483 (1088)
T KOG4318|consen 404 AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEE 483 (1088)
T ss_pred HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112211 11112222222222223332222
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-
Q 008276 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP-----MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA- 498 (571)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 498 (571)
..... -+ ...|..|++.+....+.+.|..+.++.. +..|..-+..+.+.+.+.+....+..+++++.+.-
T Consensus 484 kye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~ 559 (1088)
T KOG4318|consen 484 KYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAE 559 (1088)
T ss_pred HHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhh
Confidence 22111 11 1557788888888889999999988882 23455667788888899999999999999887733
Q ss_pred --CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008276 499 --PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK 535 (571)
Q Consensus 499 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 535 (571)
|........+.+.....|+.+.-.+..+-+...|+.-
T Consensus 560 n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 560 NEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred CCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 4445667777777888999999999999888888776
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3e-11 Score=113.55 Aligned_cols=476 Identities=12% Similarity=0.007 Sum_probs=296.4
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcc--cCCCChhhHHHHHHHHHHcCCh
Q 008276 34 CNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDE--ITNKNVVFFNVLIRSYVNNYLY 111 (571)
Q Consensus 34 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~~~~ 111 (571)
+.+-+....++..|.-+-+++- ..+ -|+..---+++++.-.|+++.|..+... +...|..+......++.+..++
T Consensus 22 ~~r~~l~q~~y~~a~f~adkV~-~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~ 98 (611)
T KOG1173|consen 22 LVRDALMQHRYKTALFWADKVA-GLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEW 98 (611)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH-hcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3333444455666666666665 444 5666667788888888999988888754 4457888888889999999999
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccC
Q 008276 112 YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191 (571)
Q Consensus 112 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 191 (571)
++|..++..-. +.-+...|-..=. ...-..+.+. ++. ++......+-.-...|......++|...|.+.
T Consensus 99 ~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ar~~Y~~A 167 (611)
T KOG1173|consen 99 DQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREEARDKYKEA 167 (611)
T ss_pred HHHHHHhcccc---hhhcchhhcchhh--hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHHHHHHHHHH
Confidence 99999987321 0111111100000 0000000000 000 00111111111123344555666666666665
Q ss_pred CCCCchhHHHHHHHHHhCC-CchHHHHHHHHHHHC-CCCCCHHHHHHHHHHh-cCCCC-ccHHHHHHHHhhCCCCChhhH
Q 008276 192 PSKDVVTWNSMVAGYAQNG-RFDEALDVCREMESL-RIKPDADTMASLLPSV-TNTSP-ENVLSVKEMFLKLDNKNLVSW 267 (571)
Q Consensus 192 ~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~-~~~~~-~~~~~a~~~~~~~~~~~~~~~ 267 (571)
...|+..+..+...-...- -..+-..+++.+--. -.+.+......+.... .+..+ .+.....+.-....+.++...
T Consensus 168 l~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll 247 (611)
T KOG1173|consen 168 LLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLL 247 (611)
T ss_pred HhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHH
Confidence 5555555444332211110 011112222210000 0111111111111111 00000 000000000000112344555
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 008276 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347 (571)
Q Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (571)
....+-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+-..+.+.. +....+|-++.-.|.-.
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHh
Confidence 556677788899999999999988764 5566666666778888888887777777777764 56677888888888888
Q ss_pred CCHHHHHHHHhhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHH
Q 008276 348 GSLTEARTVFDQMRCQDV---VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYF 423 (571)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 423 (571)
|+.++|++.|.+...-|. ..|-.+...|.-.|..|+|+..|..+-+. -|. ...+.-+.--|.+.++.+.|.++|
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 999999999998775333 46999999999999999999999887763 332 223333445577889999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276 424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--------PMEP-NERIWGSLVAACCLYSNMDIGILAADHI 494 (571)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (571)
..... -.+.|+...+-+.-.....+.+.+|..+|+.. +..+ ...+++.|..+|.+.+.+++|+..++++
T Consensus 404 ~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 404 KQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 98874 23445566777777777788899999988865 1122 4567888999999999999999999999
Q ss_pred HhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 495 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
+.+.|.+..++..++-+|...|+++.|.+.|.+..
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999999888765
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=1.7e-11 Score=120.11 Aligned_cols=282 Identities=8% Similarity=-0.035 Sum_probs=176.5
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHH
Q 008276 207 AQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286 (571)
Q Consensus 207 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 286 (571)
...|+++.|.+.+.+..+. .|+. ...+-....++.+.|+++.|.++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~--------------------------------~~~~llaA~aa~~~g~~~~A~~~ 140 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEP--------------------------------VLNLIKAAEAAQQRGDEARANQH 140 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCC--------------------------------HHHHHHHHHHHHHCCCHHHHHHH
Confidence 4588999999988776554 2332 12233344566677888888888
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 008276 287 YLQMEVHGIEPNA--ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-- 362 (571)
Q Consensus 287 ~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 362 (571)
+.+..+.. |+. .........+...|+++.|...++.+.+.. +.+..+...+...+...|++++|.+.+..+.+
T Consensus 141 l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 141 LEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 87776543 333 233334556677788888888888887775 44556677777788888888888887777764
Q ss_pred -CChhHHH----HHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 008276 363 -QDVVSWT----SMISAYGMSGQGYDAVALFSKMLMSG---LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434 (571)
Q Consensus 363 -~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 434 (571)
.+...+. .........+..+++.+.+..+.+.. .+.+...+..+...+...|+.++|.+.+++..+. .|
T Consensus 218 ~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~p 294 (409)
T TIGR00540 218 LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LG 294 (409)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CC
Confidence 2222221 11111122233333334444444421 1126667777778888888888888888888764 22
Q ss_pred CHHH---HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CH--HHHHHHHHHHHhcCCHHHHHHHHHH--HHhhCCCCchhH
Q 008276 435 RIEH---FACLVDLLGRAGKVEEAYDLIKQM-PMEP-NE--RIWGSLVAACCLYSNMDIGILAADH--IFHLAPNQSGYY 505 (571)
Q Consensus 435 ~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~p~~~~~~ 505 (571)
+... ...........++.+.+.+.+++. ...| |+ ....++...+.+.|++++|.+.|++ ..+..|++ ..+
T Consensus 295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~ 373 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDL 373 (409)
T ss_pred CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHH
Confidence 2221 111111223346677777777766 3344 33 5566788888888888888888884 55566644 446
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 506 VLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 506 ~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
..++..+.+.|+.++|.+++++-.
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 688888888888888888888753
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=3.5e-11 Score=118.00 Aligned_cols=286 Identities=11% Similarity=-0.023 Sum_probs=182.9
Q ss_pred HhCCCHHHHHHHHccCCC--CCch-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHH
Q 008276 176 GKCGCLKEARRVLNDMPS--KDVV-TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSV 252 (571)
Q Consensus 176 ~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a 252 (571)
...|+++.|.+.+....+ |+.. .+-....+..+.|+++.|.+.+.+..+.. |+..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~-------------------- 152 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDN-------------------- 152 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCc--------------------
Confidence 345666666666655543 2222 22333455566677777777776665421 2210
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCC
Q 008276 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332 (571)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 332 (571)
....-.....+...|+++.|...++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+
T Consensus 153 -----------l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 153 -----------ILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred -----------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 0111222445566667777777777766653 2344555666666677777777777777776665332
Q ss_pred ChhH-------HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008276 333 NLRL-------ENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402 (571)
Q Consensus 333 ~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 402 (571)
.... +..++..-......+.....++...+ .+...+..+...+...|++++|.+.+++..+. .||...
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~ 298 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRA 298 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCccc
Confidence 2221 11111111222234455555665553 47788899999999999999999999999984 444442
Q ss_pred --H-HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHH
Q 008276 403 --F-VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ--M-PMEPNERIWGSLVA 476 (571)
Q Consensus 403 --~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~ 476 (571)
+ ..........++.+.+.+.++...+.....|+.....++...+.+.|++++|.+.|+. . ...|+...+..+..
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ 378 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAAD 378 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHH
Confidence 1 1122223445788899999988887533333326677899999999999999999994 3 66899988999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhh
Q 008276 477 ACCLYSNMDIGILAADHIFHL 497 (571)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~ 497 (571)
.+.+.|+.++|.+++++....
T Consensus 379 ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 379 AFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998663
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=2.5e-14 Score=133.09 Aligned_cols=256 Identities=16% Similarity=0.186 Sum_probs=110.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCc
Q 008276 201 SMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280 (571)
Q Consensus 201 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 280 (571)
.+...+.+.|++++|++++.+......+|+ |...|..+.......+++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~--------------------------------~~~~~~~~a~La~~~~~~ 60 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPD--------------------------------DPEYWRLLADLAWSLGDY 60 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccc--------------------------------cccccccccccccccccc
Confidence 346777788999999998865544322333 334455566667778899
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 008276 281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360 (571)
Q Consensus 281 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (571)
+.|.+.++++...+. -+...+..++.. ...+++++|.+++....+.. ++...+..++..+...++++++..+++.+
T Consensus 61 ~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~ 136 (280)
T PF13429_consen 61 DEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKL 136 (280)
T ss_dssp -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999987652 255566666666 68899999999887766543 55666778888899999999999998885
Q ss_pred C-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 008276 361 R-----CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP 434 (571)
Q Consensus 361 ~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 434 (571)
. ..+...|..+...+.+.|+.++|++.+++..+ ..|+ ......++..+...|+.+++..+++...+. .+.
T Consensus 137 ~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~ 212 (280)
T PF13429_consen 137 EELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APD 212 (280)
T ss_dssp HH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HT
T ss_pred HhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcC
Confidence 4 24677889999999999999999999999999 5665 667888999999999999999999998875 255
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (571)
++..+..+..++...|+.++|+..|++. ...| |+.....+..++...|+.++|..+.+++.+
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6677888999999999999999999998 4455 788888999999999999999999988765
No 51
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.1e-09 Score=103.73 Aligned_cols=451 Identities=12% Similarity=0.091 Sum_probs=269.4
Q ss_pred HHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHH--HH--HHHHcCC
Q 008276 35 NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL--IR--SYVNNYL 110 (571)
Q Consensus 35 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--i~--~~~~~~~ 110 (571)
++.....+++++|.+.-.+++ ..+ +.+...+.+=+-++.+.+++++|+.+.+.-... .+++.. =. ++.+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil-~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKIL-SIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHH-hcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 344566688999999999998 555 556777777777999999999999777654431 122222 33 4457889
Q ss_pred hhHHHHHHHHHHhCCCCCCc-ccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhCCCHHHHHHHH
Q 008276 111 YYDALHVYKNMSVHGFDPDC-YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN-LFNGNGLVAMYGKCGCLKEARRVL 188 (571)
Q Consensus 111 ~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 188 (571)
.++|+..++. ..++. .+...-...|.+.+++++|..+|+.+.+++.+.- ...-..++.+ +-.-.+. +.
T Consensus 95 ~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~ 164 (652)
T KOG2376|consen 95 LDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LL 164 (652)
T ss_pred HHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HH
Confidence 9999999883 33333 3666666778999999999999999988764322 2222222211 1111121 33
Q ss_pred ccCCCCCchhHH---HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChh
Q 008276 189 NDMPSKDVVTWN---SMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV 265 (571)
Q Consensus 189 ~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~ 265 (571)
+..+.....+|. .....++..|++.+|+++++.....+..- +..... .-+....-+ ..
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-----------l~~~d~-~eEeie~el-------~~ 225 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK-----------LEDEDT-NEEEIEEEL-------NP 225 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-----------hccccc-chhhHHHHH-------HH
Confidence 444432233333 34566788999999999999884321100 000000 000000000 01
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH---hccCCchHH--HHHHHHHHHH-----------cC
Q 008276 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA---CGDLSALLL--GRKIHRYVER-----------KK 329 (571)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~~~~--a~~~~~~~~~-----------~~ 329 (571)
.-..|..++...|+.++|..+|...+... .+|........+- ...-.++.. +...++.... ..
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~ 304 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK 304 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 23346667888999999999999998875 5555333222222 211111111 1111111111 00
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-hhHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 008276 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD-VVSWTSMISAY--GMSGQGYDAVALFSKMLMSGLCPDS--IAFV 404 (571)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~ 404 (571)
-.-....-+.++..| .+..+.+.++-....... ...+.+++... ++...+.++.+++...-+. .|.. ....
T Consensus 305 qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L 380 (652)
T KOG2376|consen 305 QKQAIYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLL 380 (652)
T ss_pred HHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHH
Confidence 001111112333333 356677777777776532 33444444433 2333578888888887764 3433 3555
Q ss_pred HHHHHhhcCCCHHHHHHHHH--------HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHH--
Q 008276 405 SVLSACSHAGLLEEGRYYFK--------IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-----PMEPNER-- 469 (571)
Q Consensus 405 ~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~-- 469 (571)
..++.....|+++.|.+++. .+.+. +..| .+...++..+.+.++.+.|..++.+. ...+...
T Consensus 381 ~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l 457 (652)
T KOG2376|consen 381 LRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL 457 (652)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence 56677888999999999998 44433 3334 44456777888888776676666654 1122222
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276 470 --IWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527 (571)
Q Consensus 470 --~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 527 (571)
++.-+...-.+.|+-++|..+++++.+.+|++..+...++.+|++.. .+.|..+-+.
T Consensus 458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred HhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 33333444457899999999999999999999999999999988764 5666665443
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=8.9e-11 Score=102.75 Aligned_cols=288 Identities=11% Similarity=0.032 Sum_probs=202.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCC-c--hhHHHHHHHHHHhCCCHHHH
Q 008276 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY-N--LFNGNGLVAMYGKCGCLKEA 184 (571)
Q Consensus 108 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~~~l~~~~~~~g~~~~A 184 (571)
+.+.++|+++|-+|.+.. +-+..+-.+|.+.|.+.|..+.|+++...+..+---+ + ....-.|.+-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 457888888888887731 1223334566677888888888888888887642111 1 22344567788899999999
Q ss_pred HHHHccCCC-C--CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCC
Q 008276 185 RRVLNDMPS-K--DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN 261 (571)
Q Consensus 185 ~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 261 (571)
+.+|..+.+ + -......|+..|-...+|++|+++-+++.+.+.++...- |
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e----I----------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE----I----------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH----H-----------------------
Confidence 999998886 3 234677899999999999999999999887655443221 1
Q ss_pred CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 008276 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341 (571)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (571)
...|.-|...+....+.++|..++.+..+.+ +.....-..+.+.....|++..|.+.++.+.+.+...-..+...|.
T Consensus 180 --AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 180 --AQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred --HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 2457777888888889999999999988764 2233333455566778889999999999988887666667777888
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc---CCCH
Q 008276 342 DMYAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH---AGLL 416 (571)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~~~~ 416 (571)
.+|...|+.++....+..+.+ ++...-..+.+.-....-.+.|..++.+-+. -+|+...+..++..... .|..
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~ 334 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRA 334 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccch
Confidence 888888888888888877764 4555555555555555556667666666555 46888888888776533 2344
Q ss_pred HHHHHHHHHHHH
Q 008276 417 EEGRYYFKIMTE 428 (571)
Q Consensus 417 ~~a~~~~~~~~~ 428 (571)
.+-...++.|..
T Consensus 335 k~sL~~lr~mvg 346 (389)
T COG2956 335 KESLDLLRDMVG 346 (389)
T ss_pred hhhHHHHHHHHH
Confidence 555555555543
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=7.4e-11 Score=103.26 Aligned_cols=301 Identities=13% Similarity=0.098 Sum_probs=221.1
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHH
Q 008276 209 NGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288 (571)
Q Consensus 209 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 288 (571)
+++.++|.++|-+|.+. |..| ..+.-+|.+.|-+.|..|+|+.+-.
T Consensus 48 s~Q~dKAvdlF~e~l~~----d~~t------------------------------~e~~ltLGnLfRsRGEvDRAIRiHQ 93 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----DPET------------------------------FEAHLTLGNLFRSRGEVDRAIRIHQ 93 (389)
T ss_pred hcCcchHHHHHHHHHhc----Cchh------------------------------hHHHHHHHHHHHhcchHHHHHHHHH
Confidence 56788899999888762 2222 3456678888889999999999988
Q ss_pred HHHHCCCCCCH------HHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 008276 289 QMEVHGIEPNA------ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362 (571)
Q Consensus 289 ~m~~~g~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 362 (571)
.+.++ ||. ...-.+..-|...|-+|.|+.+|..+.+.+ ..-......|+..|-...+|++|.++-+++.+
T Consensus 94 ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k 169 (389)
T COG2956 94 TLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVK 169 (389)
T ss_pred HHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 88763 432 233345566788899999999999888755 34455667788999999999999998887765
Q ss_pred CCh--------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 008276 363 QDV--------VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433 (571)
Q Consensus 363 ~~~--------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 433 (571)
-+. ..|.-|...+....+.+.|..++.+..+. .|+.. .-..+.+.....|+++.|.+.|+.+.+. +..
T Consensus 170 ~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~ 246 (389)
T COG2956 170 LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPE 246 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChH
Confidence 222 24666667777788999999999999885 34333 3345667788899999999999999875 322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512 (571)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 512 (571)
--..+...|..+|...|+.++.+..+.++ ...+....-..+........-.+.|...+.+-+...|.-...|..+-.-+
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 23467788999999999999999999877 44555555555555555666677888888888888886554444443333
Q ss_pred Hh--cCCHHHHHHHHHHHHhCCCCCCCceE-EEECCEEEEE
Q 008276 513 AK--AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550 (571)
Q Consensus 513 ~~--~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~~~~~~~~ 550 (571)
.. -|+..+.+..++.|....++..|.+. -..+...|+|
T Consensus 327 ~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 327 ADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred ccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 33 46688889999999999999999888 6666666665
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.48 E-value=8.7e-09 Score=98.62 Aligned_cols=143 Identities=11% Similarity=0.103 Sum_probs=74.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HhhcCCCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 008276 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLS--ACSHAGLLEEGRYYFKIMTEQYKLVPRI--EHFACLVDLLGRAGKVEEA 455 (571)
Q Consensus 380 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A 455 (571)
..+.|..+|++.++ |++|...-+.-|+- .-.+.|-...|..+++++.. ++++.. ..|+..|.-....=.+...
T Consensus 565 klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~T 641 (835)
T KOG2047|consen 565 KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRT 641 (835)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 45566666666665 45544332211211 11233555556666666544 333322 3444444433332233333
Q ss_pred HHHHHhC-CCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhcCCHHHHHHHH
Q 008276 456 YDLIKQM-PMEPNERIWGSLVA---ACCLYSNMDIGILAADHIFHLAPN--QSGYYVLLSNIYAKAGRWGDVKRVR 525 (571)
Q Consensus 456 ~~~~~~~-~~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~ 525 (571)
..+++++ ..-|+...-...++ .-.+.|..++|..+|.-..++-++ +...|...=..-.+.|+-+--.+.+
T Consensus 642 R~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 642 REIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4444444 23344443333332 234678888898888888886633 4557888877788889855444444
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=2.7e-10 Score=102.99 Aligned_cols=296 Identities=10% Similarity=0.042 Sum_probs=173.4
Q ss_pred HHHHHHHHH--HcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 008276 98 FNVLIRSYV--NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMY 175 (571)
Q Consensus 98 ~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 175 (571)
-..+..++. -.|+|.+|.++..+-.+.+-. ....|.....+.-..|+.+.+-+++.+..+.--.++....-+..+..
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 334445553 368999999999998777533 33446666677788999999999999998864466677777888889
Q ss_pred HhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHH
Q 008276 176 GKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSV 252 (571)
Q Consensus 176 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a 252 (571)
...|+++.|..-++++.+ .+.........+|.+.|++.....++..|.+.|.-.|...-..
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------- 227 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------- 227 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------
Confidence 999999999888776654 5778889999999999999999999999999887655432100
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCC
Q 008276 253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332 (571)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 332 (571)
...+|+.++.-....+..+.-...|+..-.. .+-+...-..++.-+...|+.++|.++..+..+.+..|
T Consensus 228 ----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~ 296 (400)
T COG3071 228 ----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP 296 (400)
T ss_pred ----------HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh
Confidence 0123333333333333333333333332211 12233333334444444444444444444444444333
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276 333 NLRLENALVDMYAKCGSLTEARTVFDQMR---CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409 (571)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 409 (571)
+... .-.+.+-++.+.-.+..+.-. ..++..+..|...|.+.+.+.+|.+.|+...+ ..|+..+|+.+..+
T Consensus 297 ~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~ 370 (400)
T COG3071 297 RLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADA 370 (400)
T ss_pred hHHH----HHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHH
Confidence 3111 111222333333222222221 12334455555555556666666666665555 45555666666666
Q ss_pred hhcCCCHHHHHHHHHHHH
Q 008276 410 CSHAGLLEEGRYYFKIMT 427 (571)
Q Consensus 410 ~~~~~~~~~a~~~~~~~~ 427 (571)
+...|+..+|.+..++..
T Consensus 371 ~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 371 LDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHcCChHHHHHHHHHHH
Confidence 666666666665555544
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=3.6e-11 Score=109.14 Aligned_cols=199 Identities=13% Similarity=0.066 Sum_probs=165.0
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008276 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408 (571)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 408 (571)
.....+..+...+...|++++|...+++..+ | +...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3355667778888899999999999987754 3 45678888889999999999999999998853 334567778888
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 008276 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDI 486 (571)
Q Consensus 409 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 486 (571)
.+...|++++|...++..............+..+...+...|++++|...+++. ...| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999999874222334567778889999999999999999987 4444 56678888899999999999
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 487 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
|...++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999998888888999999999999999999998887543
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=3.3e-10 Score=102.41 Aligned_cols=278 Identities=13% Similarity=0.003 Sum_probs=123.8
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCC----CChhhHHHHHHHHHHcCCchHH
Q 008276 208 QNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN----KNLVSWNVMIAVYANNSMPAEA 283 (571)
Q Consensus 208 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A 283 (571)
-.|+|.+|+++..+-.+.+-.|- .+.++.+-+.....+.+.+...+.+..+ ++...+-+........|+++.|
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~---l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPV---LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchH---HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 37899999999988777665442 2222222222222224444444433322 2233344444445555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCCh-------hHHHHHHHHHHhcCCHHHHHHH
Q 008276 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL-------RLENALVDMYAKCGSLTEARTV 356 (571)
Q Consensus 284 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 356 (571)
..-++++.+.+ +-+.........+|.+.|++.....++..+.+.+.-.+. .++..+++-....+..+.-...
T Consensus 173 ~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 173 RENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 55555554443 223344444445555555555555555555554433222 1233333333333333333334
Q ss_pred HhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 008276 357 FDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433 (571)
Q Consensus 357 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 433 (571)
++..+. .++..-..++.-+.+.|+.++|.++.++..+.+..|+-. ..-.+.+.++...-++..+.-.+.++..
T Consensus 252 W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 252 WKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred HHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 444432 234444444444445555555555554444444333311 1112233444444444444433322222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495 (571)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 495 (571)
| ..+.+|...|.+.+.|.+|.+.|+.. ...|+..+|+.+..++.+.|+..+|.+..++..
T Consensus 328 p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 P--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred h--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 2 33444444444444455554444433 444444444444444444444444444444444
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=3.8e-10 Score=111.54 Aligned_cols=499 Identities=12% Similarity=0.050 Sum_probs=291.2
Q ss_pred hhhccccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHH
Q 008276 20 LVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99 (571)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 99 (571)
...++.|+..++..++.-|+.-|+.+.|- +|.-|. ....+.+...++.++....++|+.+.+. +|...+|.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt 87 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYT 87 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCC-------CCchhHHH
Confidence 44678888888888888888888888887 888777 6666777777888888877777776665 67888999
Q ss_pred HHHHHHHHcCChhH---HHHHHHHH----HhCC-----------------CCCCccc----------HHHHHHHhh----
Q 008276 100 VLIRSYVNNYLYYD---ALHVYKNM----SVHG-----------------FDPDCYT----------YPCVLKACS---- 141 (571)
Q Consensus 100 ~li~~~~~~~~~~~---A~~~~~~m----~~~g-----------------~~p~~~~----------~~~li~~~~---- 141 (571)
.|..+|.+.|+... +.+.++.. ...| .-||..+ |..+++...
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 99999999998654 22212211 1122 1222221 111122111
Q ss_pred --cCCCh-----------HHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhCCCHHHHHHHHccCCCC----CchhHHHHH
Q 008276 142 --GSNSL-----------LVGLQIHCSVVKVGL-DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK----DVVTWNSMV 203 (571)
Q Consensus 142 --~~~~~-----------~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li 203 (571)
..+.+ .-.+++.+ |.+.+. .++..++..++..-...|+.+.|..++.+|.+. +..-|-.|+
T Consensus 168 sa~~~p~~vfLrqnv~~ntpvekLl~-~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 168 SAWNAPFQVFLRQNVVDNTPVEKLLN-MCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred ccccchHHHHHHHhccCCchHHHHHH-HHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 11111 11112222 222222 488889999999999999999999999999874 222333344
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCcc-----------------------------------
Q 008276 204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN----------------------------------- 248 (571)
Q Consensus 204 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~----------------------------------- 248 (571)
-+ .++...+..++.-|...|+.|+..|+..-+..+...+...
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~ 323 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLR 323 (1088)
T ss_pred hc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHH
Confidence 33 7888888899999999999999999988777776633222
Q ss_pred -----------------------------------------------------------HHHHHHHHhhCCC--------
Q 008276 249 -----------------------------------------------------------VLSVKEMFLKLDN-------- 261 (571)
Q Consensus 249 -----------------------------------------------------------~~~a~~~~~~~~~-------- 261 (571)
...+...|.+...
T Consensus 324 ~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~ 403 (1088)
T KOG4318|consen 324 KSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYY 403 (1088)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 0011111111110
Q ss_pred -------------------------CCh----------------------------hhHHHHHHHHHHcCCchHHHHHHH
Q 008276 262 -------------------------KNL----------------------------VSWNVMIAVYANNSMPAEAVDLYL 288 (571)
Q Consensus 262 -------------------------~~~----------------------------~~~~~l~~~~~~~g~~~~A~~~~~ 288 (571)
||. ..-+.++..+++.-+..+++..-+
T Consensus 404 ~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~e 483 (1088)
T KOG4318|consen 404 AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEE 483 (1088)
T ss_pred HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 011223334444444444443333
Q ss_pred HHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Q 008276 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK--LQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---- 362 (571)
Q Consensus 289 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 362 (571)
+....- -+ ..|..+++-+......+.|..+.+++.... +..+..-+..+.+.+.+.+....+..++.++.+
T Consensus 484 kye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n 560 (1088)
T KOG4318|consen 484 KYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAEN 560 (1088)
T ss_pred HHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhC
Confidence 322211 11 467778888888888888888887776432 344556677788888888888888888888774
Q ss_pred -CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC------------------------------CCCCHHHHHHHHHH-
Q 008276 363 -QD-VVSWTSMISAYGMSGQGYDAVALFSKMLMSG------------------------------LCPDSIAFVSVLSA- 409 (571)
Q Consensus 363 -~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------------------------------~~p~~~~~~~l~~~- 409 (571)
++ ..++..++......|+.+..-++++-+...| .+|.+.....+.+.
T Consensus 561 ~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv 640 (1088)
T KOG4318|consen 561 EPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLV 640 (1088)
T ss_pred CchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHH
Confidence 21 1223334444445555554444444433322 22322222222221
Q ss_pred --------------------hhcCCCHHHHHHHHHHHH--HhcC---------CCC---------CHHHHHHHHHHHHhc
Q 008276 410 --------------------CSHAGLLEEGRYYFKIMT--EQYK---------LVP---------RIEHFACLVDLLGRA 449 (571)
Q Consensus 410 --------------------~~~~~~~~~a~~~~~~~~--~~~~---------~~~---------~~~~~~~l~~~~~~~ 449 (571)
|.+.|++.++.++.+--- -+++ +.| +.....-|+..|.+.
T Consensus 641 ~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~ 720 (1088)
T KOG4318|consen 641 YKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEE 720 (1088)
T ss_pred HhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhh
Confidence 223333333332221100 0000 000 001122366788899
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhC---CCCchhHHHHHHHHHhcCCHHHHHH
Q 008276 450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS---NMDIGILAADHIFHLA---PNQSGYYVLLSNIYAKAGRWGDVKR 523 (571)
Q Consensus 450 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~ 523 (571)
|+++.|..+|.++.+.|+..+...|...+.+.. +.-++....+++.+.. |.+...|.-.+....+....+.|.+
T Consensus 721 g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk 800 (1088)
T KOG4318|consen 721 GRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKK 800 (1088)
T ss_pred hHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHH
Confidence 999999999999988888888888887776533 4556666666666655 3334445555555556666668899
Q ss_pred HHHHHHhCCCC
Q 008276 524 VRKFMNSKGIK 534 (571)
Q Consensus 524 ~~~~m~~~~~~ 534 (571)
++.+..++...
T Consensus 801 ~f~r~eeq~~v 811 (1088)
T KOG4318|consen 801 CFERLEEQLTV 811 (1088)
T ss_pred HHHHHHHccCC
Confidence 99998887543
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.42 E-value=2.3e-09 Score=104.81 Aligned_cols=369 Identities=12% Similarity=0.095 Sum_probs=247.6
Q ss_pred hCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 008276 159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA 235 (571)
Q Consensus 159 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 235 (571)
..+.-+...|..|.-+...+|+++.+.+.|++... .....|+.+...+...|.-..|..+++.-......|+..+.-
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34566788888888889999999999999988765 355678888889999999899999988776544345444433
Q ss_pred HHHH-HhcCCC-C--ccHHHHHHHHhhCC----CCChhhHHHHHHHHHHc-----------CCchHHHHHHHHHHHCC-C
Q 008276 236 SLLP-SVTNTS-P--ENVLSVKEMFLKLD----NKNLVSWNVMIAVYANN-----------SMPAEAVDLYLQMEVHG-I 295 (571)
Q Consensus 236 ~ll~-~~~~~~-~--~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~g-~ 295 (571)
.+.. .|...- . ..++-|.+..+... ......|-.+.-+|... ....++++.+++..+.+ -
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3333 333221 1 11333333333111 23344555555555432 12446777777776654 2
Q ss_pred CCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC---------
Q 008276 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QD--------- 364 (571)
Q Consensus 296 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~--------- 364 (571)
.|+...|..+ -|+..++++.|.+..++..+.+...+...|..|.-.+...+++.+|+.+.+.... ++
T Consensus 477 dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 3433333333 3556678888999988888886678888888888888888888888888775542 11
Q ss_pred ------------hhHHHHHHHHHH------h-----------------cCChHHHHHHHHHHH--------HCC------
Q 008276 365 ------------VVSWTSMISAYG------M-----------------SGQGYDAVALFSKML--------MSG------ 395 (571)
Q Consensus 365 ------------~~~~~~li~~~~------~-----------------~~~~~~a~~~~~~m~--------~~g------ 395 (571)
..|...++..+- . ..+..++.+..+.+. ..|
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 111222221111 0 011111222111110 011
Q ss_pred ---CCC--C------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 008276 396 ---LCP--D------SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-P 463 (571)
Q Consensus 396 ---~~p--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 463 (571)
+.| + ...|......+.+.+..++|...+.+... ..+.....|......+...|.+++|.+.|... .
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 111 1 12344556667788888999988888865 34556677888888899999999999998877 7
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 464 MEP-NERIWGSLVAACCLYSNMDIGIL--AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 464 ~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
+.| ++.+..++...+.+.|+...|.. ++..+.+++|.++.+|..++..+.+.|+.++|.+.|....+-
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 777 56788999999999999998888 999999999999999999999999999999999999987653
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.41 E-value=3.9e-10 Score=109.45 Aligned_cols=236 Identities=14% Similarity=0.107 Sum_probs=152.0
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHHC-----C-CCCCHHHH-HHHHHHhccCCchHHHHHHHHHHHHc-----CCCC
Q 008276 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVH-----G-IEPNAISV-ASVLPACGDLSALLLGRKIHRYVERK-----KLQP 332 (571)
Q Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~ 332 (571)
.+...+...|...|++++|..+++...+. | ..|...+. ..+...|...+++++|..+|+.+... | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G-~~ 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG-ED 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC-CC
Confidence 34455788889999999999988887653 1 01222111 12333344444444444444444321 1 00
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCCHH-HHHH
Q 008276 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM-----SGL-CPDSI-AFVS 405 (571)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~-~p~~~-~~~~ 405 (571)
++. -..+++.|...|.+.|++++|..++++..+ .|. .|... .++.
T Consensus 279 h~~----------------------------va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 279 HPA----------------------------VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred CHH----------------------------HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 000 112445555556666666655555554432 122 22222 4666
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCC-CHH
Q 008276 406 VLSACSHAGLLEEGRYYFKIMTEQYK--LVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM---------PMEP-NER 469 (571)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p-~~~ 469 (571)
+...|...+++++|..+++...+.+. +.++ ..+++.|...|...|++++|.++++++ +..+ ...
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 77778888999999988887665432 2222 257889999999999999999999877 1122 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 470 IWGSLVAACCLYSNMDIGILAADHIFHL----APN---QSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
.++.+...|.+.+++.+|.++|.+...+ +|+ ...+|..|+.+|...|++++|.++.+...
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 6788889999999999999999987653 344 45578999999999999999999988876
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=5.9e-09 Score=94.54 Aligned_cols=274 Identities=9% Similarity=-0.009 Sum_probs=196.3
Q ss_pred CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHH
Q 008276 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273 (571)
Q Consensus 194 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 273 (571)
.|+.....+...+...|+.++|+..|++.... .|+..+ ........
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~--------------------------------~MD~Ya~L 275 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVE--------------------------------AMDLYAVL 275 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhh--------------------------------hHHHHHHH
Confidence 36677778888888888888888888877642 333211 11111223
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 008276 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353 (571)
Q Consensus 274 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (571)
+.+.|+++....+...+.... +-+...|..-........+++.|..+-+..++.+ +.+...+-.-...+...+++++|
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHH
Confidence 456677777777766665421 1222233333334455677888888887777665 44555555555677888999999
Q ss_pred HHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhh-cCCCHHHHHHHHHHHHH
Q 008276 354 RTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL-SACS-HAGLLEEGRYYFKIMTE 428 (571)
Q Consensus 354 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~ 428 (571)
.-.|+.... -+..+|.-|+..|...|.+.+|..+-+..... ++.+..+...+. ..|. ....-++|..++++..+
T Consensus 354 ~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~ 432 (564)
T KOG1174|consen 354 VIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK 432 (564)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc
Confidence 999987763 37789999999999999999999888876664 455666666552 3332 33445789999988763
Q ss_pred hcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 008276 429 QYKLVPRI-EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506 (571)
Q Consensus 429 ~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 506 (571)
+.|+- ...+.+.+.+...|+.++++.++++. ...||....+.|...+...+.+++|+..|..+++++|.+..+..
T Consensus 433 ---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 433 ---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred ---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence 45654 55678889999999999999999987 66789999999999999999999999999999999998765443
Q ss_pred H
Q 008276 507 L 507 (571)
Q Consensus 507 ~ 507 (571)
.
T Consensus 510 G 510 (564)
T KOG1174|consen 510 G 510 (564)
T ss_pred H
Confidence 3
No 62
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=1.1e-08 Score=91.02 Aligned_cols=439 Identities=15% Similarity=0.080 Sum_probs=262.9
Q ss_pred HHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHHHcCCh
Q 008276 35 NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYVNNYLY 111 (571)
Q Consensus 35 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 111 (571)
+.-+...+|+..|+.+++-.. ..+-.-...+-.=+..++-..|++++|...+..+.. ++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~-~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKL-NLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhh-ccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 344566788999998888665 444332222333345566688999999999987754 5666777777777888999
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccC
Q 008276 112 YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191 (571)
Q Consensus 112 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 191 (571)
.+|..+-.+..+ ++-.-..+.....+.++-++-..+.+.+... ..-.-+|..+....-.+.+|+.++.++
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999888766533 2333344555555777777666666655432 233345666666667899999999998
Q ss_pred CC--CCchhHHHH-HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC----CCCccHHHHHHHHhhCCCCCh
Q 008276 192 PS--KDVVTWNSM-VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN----TSPENVLSVKEMFLKLDNKNL 264 (571)
Q Consensus 192 ~~--~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~~ 264 (571)
.. |+-...|.- .-+|.+..-++-+.+++...... -||+ |+..-+.+|.. .+....++..++.+.+.+.
T Consensus 178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 76 444455543 45667788888888888777653 3432 33333333322 1222233344444444321
Q ss_pred hhHHHHHHHHHHc-----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHH
Q 008276 265 VSWNVMIAVYANN-----SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339 (571)
Q Consensus 265 ~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (571)
...+.-+++. .+-+.|++++-.+.+. .|... ..++--|.+.++..+|..+.+++.- ..|-......
T Consensus 253 ---~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEAR--lNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKg 323 (557)
T KOG3785|consen 253 ---YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEAR--LNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKG 323 (557)
T ss_pred ---chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHhh--hhheeeecccccHHHHHHHHhhcCC--CChHHHHHHH
Confidence 1122223333 2446677776665542 33322 2334456777888877776654331 1122222222
Q ss_pred HHHHH-----HhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276 340 LVDMY-----AKCGSLTEARTVFDQMRC-----QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409 (571)
Q Consensus 340 l~~~~-----~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 409 (571)
++.+- .....+.-|.+.|.-.-+ ..+.--.++..++.-..++++++-++.....-=...|...| .+.++
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQA 402 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQA 402 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHH
Confidence 22111 111234556666655443 22333556666666677788888888887774222233333 46788
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHH
Q 008276 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL-VAACCLYSNMDIGI 488 (571)
Q Consensus 410 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~ 488 (571)
.+..|++.+|+++|-.+... .++.+..-...|.++|.+.++.+.|.+++-++.-..+..+...+ ..-|.+.+.+--|-
T Consensus 403 k~atgny~eaEelf~~is~~-~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGP-EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred HHHhcChHHHHHHHhhhcCh-hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999988777542 22333333355678888999999999988888533344444444 45688888888888
Q ss_pred HHHHHHHhhCCC
Q 008276 489 LAADHIFHLAPN 500 (571)
Q Consensus 489 ~~~~~~~~~~p~ 500 (571)
+.|+.+..++|.
T Consensus 482 KAFd~lE~lDP~ 493 (557)
T KOG3785|consen 482 KAFDELEILDPT 493 (557)
T ss_pred HhhhHHHccCCC
Confidence 888888888873
No 63
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.38 E-value=1.3e-07 Score=90.94 Aligned_cols=450 Identities=12% Similarity=0.108 Sum_probs=259.9
Q ss_pred cCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---------------
Q 008276 28 LLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--------------- 92 (571)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------- 92 (571)
.-.|...+.-..+.+-++.+.+++.+.+ +.++...+-.|..+++.++.++|.+.+..+..
T Consensus 138 ~rIW~lyl~Fv~~~~lPets~rvyrRYL-----k~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~ql 212 (835)
T KOG2047|consen 138 DRIWDLYLKFVESHGLPETSIRVYRRYL-----KVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQL 212 (835)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHH-----hcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhH
Confidence 3456666666777777777777777776 33445567777777777888877777765532
Q ss_pred -----------C--------------------C--hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 008276 93 -----------K--------------------N--VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA 139 (571)
Q Consensus 93 -----------~--------------------~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 139 (571)
| | ...|++|.+.|++.|.+++|.++|++.... ..+..-|..+.++
T Consensus 213 w~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~ 290 (835)
T KOG2047|consen 213 WLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDA 290 (835)
T ss_pred HHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHH
Confidence 1 1 125778888888888888888888877654 2344445555544
Q ss_pred hhcCC----------------------ChHHHHHHHHHHHHhC-----------CCCchhHHHHHHHHHHhCCCHHHHHH
Q 008276 140 CSGSN----------------------SLLVGLQIHCSVVKVG-----------LDYNLFNGNGLVAMYGKCGCLKEARR 186 (571)
Q Consensus 140 ~~~~~----------------------~~~~a~~~~~~~~~~g-----------~~~~~~~~~~l~~~~~~~g~~~~A~~ 186 (571)
|+.-. +++....-++.+...+ -+-++..|..-+.. ..|+..+-..
T Consensus 291 Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~ 368 (835)
T KOG2047|consen 291 YAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQIN 368 (835)
T ss_pred HHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHH
Confidence 43211 1111222222222211 01122222222221 2344444444
Q ss_pred HHccCCC-------C--CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC--CCCccHHHHHHH
Q 008276 187 VLNDMPS-------K--DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN--TSPENVLSVKEM 255 (571)
Q Consensus 187 ~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~~~a~~~ 255 (571)
.|.+... + -...|-.+...|-..|+.+.|..+|++..+...+ .......+-..|+. ......+.|.++
T Consensus 369 tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~-~v~dLa~vw~~waemElrh~~~~~Al~l 447 (835)
T KOG2047|consen 369 TYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK-TVEDLAEVWCAWAEMELRHENFEAALKL 447 (835)
T ss_pred HHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc-chHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4443321 1 1235677777778888888888888877654322 22222222222221 122235556555
Q ss_pred HhhCC---------------C------CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc
Q 008276 256 FLKLD---------------N------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314 (571)
Q Consensus 256 ~~~~~---------------~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 314 (571)
++... + .+...|...++.--..|-++....+|+.+.+..+....... ....-+-...-
T Consensus 448 m~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~-NyAmfLEeh~y 526 (835)
T KOG2047|consen 448 MRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIII-NYAMFLEEHKY 526 (835)
T ss_pred HHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhhHH
Confidence 55443 1 13335666667667777888888888888776533222221 11122334455
Q ss_pred hHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHh---cCCHHHHHHHHhhCCC--CChhH---HHHHHHHHHhcCChHHHH
Q 008276 315 LLLGRKIHRYVERKKLQPNL-RLENALVDMYAK---CGSLTEARTVFDQMRC--QDVVS---WTSMISAYGMSGQGYDAV 385 (571)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~--~~~~~---~~~li~~~~~~~~~~~a~ 385 (571)
++++.++|+.-+..=..|+. ..|+..+.-+.+ ..+++.|..+|++..+ |.... |-.....--+.|-...|+
T Consensus 527 feesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~am 606 (835)
T KOG2047|consen 527 FEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAM 606 (835)
T ss_pred HHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 77777777765543223443 456655544433 3479999999999886 42221 222222223568888999
Q ss_pred HHHHHHHHCCCCCCHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHH
Q 008276 386 ALFSKMLMSGLCPDSI--AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE---HFACLVDLLGRAGKVEEAYDLIK 460 (571)
Q Consensus 386 ~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~ 460 (571)
++|++.... +++... .|+..|.--...=-+.....+|++..+. -|+.. ..--+.+.-.+.|..+.|..++.
T Consensus 607 siyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya 682 (835)
T KOG2047|consen 607 SIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYA 682 (835)
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 999997664 666543 7888887655555567788999999875 45543 34445666788999999999987
Q ss_pred hC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008276 461 QM--PMEP--NERIWGSLVAACCLYSNMDIGILAAD 492 (571)
Q Consensus 461 ~~--~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~ 492 (571)
-. -.+| +...|.+.=.--.++|+-+.-.++++
T Consensus 683 ~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 683 HGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred hhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 65 2234 66778888777889999554444444
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=5.1e-10 Score=114.11 Aligned_cols=242 Identities=16% Similarity=0.065 Sum_probs=178.1
Q ss_pred CchHHHHHHHHHHHCCCCCC-HHHHHHHHHHhc---------cCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 008276 279 MPAEAVDLYLQMEVHGIEPN-AISVASVLPACG---------DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348 (571)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (571)
++++|.+.|++..+. .|+ ...+..+..++. ..+++++|...++.+.+.+ +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 467899999998875 454 344444443332 3355889999999999886 556778888888899999
Q ss_pred CHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHH
Q 008276 349 SLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFK 424 (571)
Q Consensus 349 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~ 424 (571)
++++|...|++..+ | +...+..+...+...|++++|+..++++.+ ..|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999999775 4 456788899999999999999999999999 455533 33334445667899999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhC---C
Q 008276 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNER-IWGSLVAACCLYSNMDIGILAADHIFHLA---P 499 (571)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p 499 (571)
++.+. ..+.++..+..+..++...|+.++|...+.++ ...|+.. .++.+...+...| +.|...++++.+.. |
T Consensus 431 ~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 98764 22224556777888999999999999999988 4455433 4455555666666 47888788776643 4
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 500 NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 500 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
.++.. +...|.-.|+.+.+... +++.+.|
T Consensus 508 ~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 44433 55567778888887777 8777654
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=2.2e-10 Score=100.37 Aligned_cols=226 Identities=12% Similarity=0.025 Sum_probs=190.5
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhc
Q 008276 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMS 378 (571)
Q Consensus 302 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~ 378 (571)
-..+..+|.+.|.+.+|++.++..++. .|-+.+|..|-.+|.+..+++.|..++.+-.+ | |+....-+.+.+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 356778899999999999999998887 46667788889999999999999999998875 5 444455677888889
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008276 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458 (571)
Q Consensus 379 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (571)
++.++|.++|+...+. -..+......+...|...++++.|+++|+++... |+ .++..|+.+.-+|.-.+++|-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 9999999999999884 2335557777778888999999999999999986 54 4677888899889899999999998
Q ss_pred HHhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 459 IKQM---PMEP--NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 459 ~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
|++. -..| -...|-.+.......||+..|.+.|+-++..+|++..+++.|+..-.+.|+.++|..+++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8876 1223 456788888888899999999999999999999999999999999999999999999999876543
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.29 E-value=1.9e-08 Score=99.09 Aligned_cols=427 Identities=12% Similarity=0.055 Sum_probs=236.2
Q ss_pred HHHHHhhcCCChHHHHHHHcccCC--CC-hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhh----
Q 008276 69 KLMRTYGACGQMVDTRHVFDEITN--KN-VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACS---- 141 (571)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---- 141 (571)
.....+...|++++|++.++.... .| ..........+.+.|+.++|..+|..+.+.+ |+...|...+..+.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 344556677777777777766443 23 3345556667777777777777777777753 56555544444333
Q ss_pred --cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHH-HHHHHHccCCCCCc-hhHHHHHHHHHhCCCchHHHH
Q 008276 142 --GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK-EARRVLNDMPSKDV-VTWNSMVAGYAQNGRFDEALD 217 (571)
Q Consensus 142 --~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~ 217 (571)
...+.+...++++++...- |.......+.-.+..-..+. .+..++..+..+.+ .+|+.+-..|....+.+-..+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHH
Confidence 1123455555565554432 22111111111111111111 12222222222222 233333333332222222223
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChh--hHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 008276 218 VCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV--SWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295 (571)
Q Consensus 218 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 295 (571)
++.......-. .+. ..... -....+|+.. ++.-+...|-..|++++|++++++.++.
T Consensus 165 l~~~~~~~l~~---------------~~~--~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-- 223 (517)
T PF12569_consen 165 LVEEYVNSLES---------------NGS--FSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-- 223 (517)
T ss_pred HHHHHHHhhcc---------------cCC--CCCcc--ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--
Confidence 33322221000 000 00000 0011234443 4456678888999999999999998886
Q ss_pred CCC-HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh--------
Q 008276 296 EPN-AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV-------- 366 (571)
Q Consensus 296 ~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------- 366 (571)
.|+ ...|..-...+-+.|++.+|...++...+.+ .-|-.+-+..+..+.+.|+.++|.+++....+++..
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m 302 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM 302 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence 454 5777788888999999999999999999876 456677777788889999999999999888765421
Q ss_pred --HH--HHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 008276 367 --SW--TSMISAYGMSGQGYDAVALFSKMLMS--GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA 440 (571)
Q Consensus 367 --~~--~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 440 (571)
.| .....+|.+.|++..|++.|....+. .+.-|..-|... |.+.+.+..=.++++.--.-+..+.=.....
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Y---c~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~ 379 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSY---CLRKMTLRAYVDMLRWEDKLRSHPFYRRAAK 379 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHH---HHhhccHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 12 33467788999999999999887763 234455555432 5555554433333322211111111123334
Q ss_pred HHHHHHHhcCCH------------------HHHHHHHHhC----------------------------------CCCCCH
Q 008276 441 CLVDLLGRAGKV------------------EEAYDLIKQM----------------------------------PMEPNE 468 (571)
Q Consensus 441 ~l~~~~~~~g~~------------------~~A~~~~~~~----------------------------------~~~p~~ 468 (571)
..++.|.+..+- .+..++-++. +.+.|.
T Consensus 380 ~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 459 (517)
T PF12569_consen 380 GAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDD 459 (517)
T ss_pred HHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCC
Confidence 455555432110 0000010000 001111
Q ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276 469 RIWGSLVAACCL-YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527 (571)
Q Consensus 469 ~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 527 (571)
.. +..-+.+ ..=.++|.++++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 460 Dp---~GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 460 DP---LGEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred Cc---cHHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 11 1112222 23467899999999999999999999999999999999999988764
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=1.9e-09 Score=97.74 Aligned_cols=199 Identities=11% Similarity=0.025 Sum_probs=105.2
Q ss_pred hhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 008276 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343 (571)
Q Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 343 (571)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|.+.++...+.. +.+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~------- 101 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDV------- 101 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHH-------
Confidence 3456666677777777777777777665542 2234445555555556666666666666555543 222333
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHH
Q 008276 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYY 422 (571)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 422 (571)
+..+...+...|++++|...+++.......| ....+..+...+...|++++|...
T Consensus 102 ------------------------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 102 ------------------------LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred ------------------------HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444445555555555555554422111 222344455555556666666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 008276 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHL 497 (571)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 497 (571)
+++..+. .+.+...+..+...+...|++++|...+++. ...| +...+..+...+...|+.++|....+.+...
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6665542 1223444555556666666666666666554 2122 3444444555555566666666665555443
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.8e-08 Score=93.13 Aligned_cols=280 Identities=16% Similarity=0.047 Sum_probs=198.6
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHH
Q 008276 197 VTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276 (571)
Q Consensus 197 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 276 (571)
.....-..-+...+++.+..++.+...+.. + .+...+..-|.++..
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-p---------------------------------fh~~~~~~~ia~l~e 290 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKD-P---------------------------------FHLPCLPLHIACLYE 290 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-C---------------------------------CCcchHHHHHHHHHH
Confidence 344444555666777777777777766532 1 122334444556667
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 008276 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTV 356 (571)
Q Consensus 277 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (571)
.|+..+-..+=.+|.+.- +-...+|-.+.--|...|+.++|.+.|......+ +.-...|-.+...|.-.+..++|+..
T Consensus 291 l~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaa 368 (611)
T KOG1173|consen 291 LGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAA 368 (611)
T ss_pred hcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHH
Confidence 777777666666776642 3445677777777777788888888888776554 22345677778888888888888887
Q ss_pred HhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC-
Q 008276 357 FDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK- 431 (571)
Q Consensus 357 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 431 (571)
+....+ .....+--+..-|.+.++.+-|.++|.+... +.| |+..++-+.-.....+.+.+|..+|+.......
T Consensus 369 Y~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 369 YFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence 766543 2222333445567888999999999998887 666 455677666666678899999999988763211
Q ss_pred C---C-CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 008276 432 L---V-PRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505 (571)
Q Consensus 432 ~---~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 505 (571)
+ . -...+++.|..+|.+.+++++|+..+++. ...| +..++.++.-.|...|+++.|+..|.+++.+.|++..+-
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~ 526 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFIS 526 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHH
Confidence 1 1 13456889999999999999999999987 3344 888999999999999999999999999999999998777
Q ss_pred HHHHHHHHh
Q 008276 506 VLLSNIYAK 514 (571)
Q Consensus 506 ~~l~~~~~~ 514 (571)
..|..+...
T Consensus 527 ~lL~~aie~ 535 (611)
T KOG1173|consen 527 ELLKLAIED 535 (611)
T ss_pred HHHHHHHHh
Confidence 777655443
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.26 E-value=1.1e-09 Score=111.62 Aligned_cols=210 Identities=12% Similarity=-0.026 Sum_probs=163.8
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH---------hcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCC
Q 008276 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYA---------KCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQ 380 (571)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~ 380 (571)
+++++|...+++..+.. +.+...+..+..+|. ..+++++|...+++..+ | +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45688999999998875 334555655555443 23458899999998875 3 66788888889999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 008276 381 GYDAVALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRAGKVEEAYDL 458 (571)
Q Consensus 381 ~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 458 (571)
+++|+..|+++.+ ..|+ ...+..+...+...|++++|...++++.+. .|+. ..+..++..+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 4565 457888888999999999999999999865 3432 2333445556778999999999
Q ss_pred HHhC-C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 459 IKQM-P-MEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 459 ~~~~-~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
++++ . ..| ++..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9887 2 235 45557777888889999999999999998888888888888888888888 588887877764
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=1.9e-10 Score=100.70 Aligned_cols=231 Identities=10% Similarity=0.008 Sum_probs=195.1
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 008276 268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347 (571)
Q Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (571)
+.+.++|.+.|.+.+|.+.++.-++. .|-..||..+-..|.+..++..|..++.+-.+.- +-++.....+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56889999999999999999988875 5677788889999999999999999999888763 44554455677888889
Q ss_pred CCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHH
Q 008276 348 GSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424 (571)
Q Consensus 348 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 424 (571)
++.++|.++++...+ .++.....+...|.-.++++-|+.+|+++...|+. ++..|..+.-+|...++++-++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998876 35666677778888999999999999999999876 77889999999999999999999999
Q ss_pred HHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276 425 IMTEQYKLVPRI--EHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500 (571)
Q Consensus 425 ~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 500 (571)
+.... .-.|+. ++|..+.......|++..|.+-|+-. ..+| ....++.|.-.-.+.|+.++|..+++.+.+..|.
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 98765 334543 67888999999999999999999876 3344 5678999988888999999999999999999886
Q ss_pred Cch
Q 008276 501 QSG 503 (571)
Q Consensus 501 ~~~ 503 (571)
-.+
T Consensus 462 m~E 464 (478)
T KOG1129|consen 462 MAE 464 (478)
T ss_pred ccc
Confidence 443
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.1e-07 Score=90.62 Aligned_cols=411 Identities=12% Similarity=0.031 Sum_probs=237.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH
Q 008276 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181 (571)
Q Consensus 102 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 181 (571)
++-+...|++++|.....++...+ +-|...+..-+-++.+.+.++.|+.+.+.-.. ...+...+---.-+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccH
Confidence 455667778888888888888754 44555666667777888888888755443211 011111111223445678999
Q ss_pred HHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCccHHHHHHHHhhCC
Q 008276 182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA-DTMASLLPSVTNTSPENVLSVKEMFLKLD 260 (571)
Q Consensus 182 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~~~a~~~~~~~~ 260 (571)
++|+..++.....+..+...-...+.+.|++++|+++|+.+.+++..--. ..-..++.+-.. ..+. ..+...
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~------l~~~-~~q~v~ 168 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA------LQVQ-LLQSVP 168 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh------hhHH-HHHhcc
Confidence 99999998665556667777778889999999999999999776543221 111222211111 1111 233333
Q ss_pred CCChhhH---HHHHHHHHHcCCchHHHHHHHHHHHCC-------CCC------CH-HHHHHHHHHhccCCchHHHHHHHH
Q 008276 261 NKNLVSW---NVMIAVYANNSMPAEAVDLYLQMEVHG-------IEP------NA-ISVASVLPACGDLSALLLGRKIHR 323 (571)
Q Consensus 261 ~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g-------~~~------~~-~~~~~ll~~~~~~~~~~~a~~~~~ 323 (571)
.....+| ......++..|++.+|++++....+.+ -.- +. ..-..+...+...|+-.+|..+|.
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 2222233 334556778999999999999883211 011 11 122234445677899999999999
Q ss_pred HHHHcCCCCChhHH----HHHHHHHHhcCCHH--HHHHHHhhCCC---------------CChhHHHHHHHHHHhcCChH
Q 008276 324 YVERKKLQPNLRLE----NALVDMYAKCGSLT--EARTVFDQMRC---------------QDVVSWTSMISAYGMSGQGY 382 (571)
Q Consensus 324 ~~~~~~~~~~~~~~----~~l~~~~~~~~~~~--~a~~~~~~~~~---------------~~~~~~~~li~~~~~~~~~~ 382 (571)
.+++.+ .+|.... |.|+. +....++- .+...++.... .....-+.++..| .+..+
T Consensus 249 ~~i~~~-~~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~ 324 (652)
T KOG2376|consen 249 DIIKRN-PADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMD 324 (652)
T ss_pred HHHHhc-CCCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHH
Confidence 999876 3443222 22221 11111111 11222222111 0111112222222 23334
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 008276 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSH--AGLLEEGRYYFKIMTEQYKLVPR-IEHFACLVDLLGRAGKVEEAYDLI 459 (571)
Q Consensus 383 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 459 (571)
.+.++-.... +..|.. .+..++..+.+ ......+..++....+ +.+-. ..+...++......|+++.|.+++
T Consensus 325 q~r~~~a~lp--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 325 QVRELSASLP--GMSPES-LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHhCC--ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4444433322 233433 34444444332 2246677777777765 33333 455667788889999999999999
Q ss_pred H--------hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCCchhHHHHHHHHHhcCCHHHHHH
Q 008276 460 K--------QM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA-------PNQSGYYVLLSNIYAKAGRWGDVKR 523 (571)
Q Consensus 460 ~--------~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~ 523 (571)
. .+ .+.-.+.+...+...+.+.++.+.|..++..++..- +.-...+..++..-.+.|+-++|..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 8 44 233344455566777778888888888888877621 2223345556666677899999999
Q ss_pred HHHHHHhC
Q 008276 524 VRKFMNSK 531 (571)
Q Consensus 524 ~~~~m~~~ 531 (571)
+++++.+.
T Consensus 480 ~leel~k~ 487 (652)
T KOG2376|consen 480 LLEELVKF 487 (652)
T ss_pred HHHHHHHh
Confidence 99999863
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=1.1e-09 Score=91.74 Aligned_cols=187 Identities=15% Similarity=0.091 Sum_probs=83.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCC
Q 008276 340 LVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS-IAFVSVLSACSHAGL 415 (571)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~ 415 (571)
|.-.|...|+...|..-+++..+ | +..+|..+...|.+.|+.+.|.+.|++... +.|+. ...|....-+|..|.
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCCC
Confidence 33444455555555555544443 1 222444444455555555555555555444 23322 233444444444445
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008276 416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADH 493 (571)
Q Consensus 416 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (571)
+++|...|++.........-..+|..+.-+..+.|+++.|.+.|++. ...| .+.....+.......|++-.|..++++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 55555555554443222222234444444444455555555554444 2222 233344444444444555555555554
Q ss_pred HHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528 (571)
Q Consensus 494 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 528 (571)
.....+.+.......+..-...|+.+.|.++=.++
T Consensus 199 ~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 199 YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44444444444444444444445444444443333
No 73
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.5e-11 Score=79.98 Aligned_cols=50 Identities=32% Similarity=0.613 Sum_probs=43.2
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhc
Q 008276 93 KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142 (571)
Q Consensus 93 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 142 (571)
||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
No 74
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=3.2e-11 Score=78.40 Aligned_cols=50 Identities=30% Similarity=0.539 Sum_probs=46.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 008276 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412 (571)
Q Consensus 363 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 412 (571)
||+.+||.+|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=2.7e-07 Score=82.35 Aligned_cols=442 Identities=12% Similarity=0.000 Sum_probs=246.2
Q ss_pred HHHhhcCCChHHHHHHHcccCCCC----hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCCh
Q 008276 71 MRTYGACGQMVDTRHVFDEITNKN----VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL 146 (571)
Q Consensus 71 ~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 146 (571)
+.-+....++..|+.+++.-..-+ ..+---+..++.+.|++++|+..|+-+.+.. .|+...+..|.-..--.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 344555677777777776543211 1122234567788899999999998877653 45555555554444456777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 008276 147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR 226 (571)
Q Consensus 147 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 226 (571)
.+|..+-... +.++--...|....-+.|+-++-..+-+.+.... .---+|.......-.+.+|+++|.+....
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d- 180 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD- 180 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 7777765543 2233333444555566677666666555544322 22233444444455678899999888764
Q ss_pred CCCCHHHHHHHHHHh-cCCCCcc-HHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 008276 227 IKPDADTMASLLPSV-TNTSPEN-VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304 (571)
Q Consensus 227 ~~p~~~t~~~ll~~~-~~~~~~~-~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 304 (571)
.|.-...+.-+..| .+..-.+ .....+++-+-.+.++.+.|.......+.=.-..|.+-.+++.+.+-.. ..+..
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--~~f~~ 257 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--YPFIE 257 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--chhHH
Confidence 34444444444433 2222200 1122222222223344445544444444333333444444444332111 01100
Q ss_pred -HHH-HhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcC---
Q 008276 305 -VLP-ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG--- 379 (571)
Q Consensus 305 -ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~--- 379 (571)
+++ .+.--.+-+.|.+++-.+.+. .|. .-..|+-.|.+.+++.+|..+.+++....+.-|-.-.-.++..|
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhc
Confidence 110 111122345566655544432 222 22345567889999999999999987544433322222222222
Q ss_pred ----ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008276 380 ----QGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454 (571)
Q Consensus 380 ----~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (571)
...-|...|+-.-+++..-|.. --.++..++.-..++++++-+++.+..- -...|... ..+..+++..|.+.+
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn-~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFN-LNLAQAKLATGNYVE 411 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhh-hHHHHHHHHhcChHH
Confidence 3445666665544444333222 2223444455556789999999888653 33444444 458899999999999
Q ss_pred HHHHHHhC-CCC-CCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhC-CCC-chhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 455 AYDLIKQM-PME-PNERIWGS-LVAACCLYSNMDIGILAADHIFHLA-PNQ-SGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 455 A~~~~~~~-~~~-p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
|+++|-.+ +.+ .|..+|.+ |.+.|.+.++++.|..++- +.+ |.+ ......+++-|.+++.+==|.+.|+.+.
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999988 222 35566655 5566778999998877654 444 322 3345567778899999988888888876
Q ss_pred hCC
Q 008276 530 SKG 532 (571)
Q Consensus 530 ~~~ 532 (571)
..+
T Consensus 489 ~lD 491 (557)
T KOG3785|consen 489 ILD 491 (557)
T ss_pred ccC
Confidence 554
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=7.2e-07 Score=81.35 Aligned_cols=262 Identities=10% Similarity=-0.017 Sum_probs=194.5
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 008276 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA-ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341 (571)
Q Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (571)
|+.....+.+++...|+.++|...|++.+.. .|+. .........+...|+.+....+...+.... +.+...|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 5677888899999999999999999998753 3433 222222233456788888888777776543 22233333333
Q ss_pred HHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHH
Q 008276 342 DMYAKCGSLTEARTVFDQMRCQ---DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLE 417 (571)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~ 417 (571)
.......+++.|..+-++..+- ++..|-.-...+...++.++|.-.|+..+. +.| +..+|..|+.+|...|.+.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHH
Confidence 4455678899999998887753 444555555678899999999999999888 565 5669999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHH-HHH-HhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008276 418 EGRYYFKIMTEQYKLVPRIEHFACLV-DLL-GRAGKVEEAYDLIKQM-PMEPNE-RIWGSLVAACCLYSNMDIGILAADH 493 (571)
Q Consensus 418 ~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (571)
+|...-+...+ .++.+..+...+. ..+ ..-..-++|.+++++. .++|+. ...+.+...|...|..++++.++++
T Consensus 386 EA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99988777766 3444555544442 222 2223458899999987 778864 4667777788899999999999999
Q ss_pred HHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 494 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
.+...|+ ...+..|++.+.....+.+|.+.|......+
T Consensus 464 ~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 464 HLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9998884 6689999999999999999999998877554
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=2.6e-09 Score=99.58 Aligned_cols=233 Identities=12% Similarity=-0.056 Sum_probs=145.6
Q ss_pred HHHHcCCchHHHHHHHHHHHCC-CCCC--HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 008276 273 VYANNSMPAEAVDLYLQMEVHG-IEPN--AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349 (571)
Q Consensus 273 ~~~~~g~~~~A~~~~~~m~~~g-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 349 (571)
.....++.+.++..+.+++... ..|+ ...|......+...|+.+.|...|+...+.. +.+...|+.+...+...|+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 3344456677888888877542 2222 3456666667778888888888888888765 4566778888888888888
Q ss_pred HHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 008276 350 LTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426 (571)
Q Consensus 350 ~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 426 (571)
+++|...|+...+ | +...|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...++..
T Consensus 114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 8888888887754 3 355677777778888888888888888877 4454432222222234556788888888665
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 008276 427 TEQYKLVPRIEHFACLVDLLGRAGKVEE--AYDLIKQM-PM----EP-NERIWGSLVAACCLYSNMDIGILAADHIFHLA 498 (571)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 498 (571)
.. ...|+...+ .+... ..|+..+ +.+.+.+. .. .| ....|..+...+.+.|++++|+..|+++.+.+
T Consensus 192 ~~--~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YE--KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Hh--hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44 223333222 22222 2444333 33222221 11 12 23467777888888888888888888888888
Q ss_pred C-CCchhHHHHHHHHH
Q 008276 499 P-NQSGYYVLLSNIYA 513 (571)
Q Consensus 499 p-~~~~~~~~l~~~~~ 513 (571)
| +.......++....
T Consensus 267 ~~~~~e~~~~~~e~~~ 282 (296)
T PRK11189 267 VYNFVEHRYALLELAL 282 (296)
T ss_pred CchHHHHHHHHHHHHH
Confidence 6 44444444544433
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=1.2e-08 Score=95.27 Aligned_cols=212 Identities=15% Similarity=0.096 Sum_probs=146.8
Q ss_pred CchHHHHHHHHHHHHcC-CCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHH
Q 008276 313 SALLLGRKIHRYVERKK-LQP--NLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVA 386 (571)
Q Consensus 313 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~ 386 (571)
+..+.+..-+.+++... ..| ....|..+...|...|+.++|...|++..+ | +...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666666432 122 235566777788899999999998888764 3 56789999999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 008276 387 LFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--P 463 (571)
Q Consensus 387 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 463 (571)
.|++..+ +.|+ ...|..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.|.+. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999988 5565 457777888888899999999999998864 343322222223345567899999998665 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008276 464 MEPNERIWGSLVAACCLYSNMDIGILAADHIF-------HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533 (571)
Q Consensus 464 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 533 (571)
..|+...| .......|+...+ ..++.+. ++.|....+|..++.++.+.|++++|...|++..+.++
T Consensus 195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 23332222 2222335555443 2333333 45566778899999999999999999999998886653
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.19 E-value=8.7e-08 Score=93.23 Aligned_cols=218 Identities=10% Similarity=0.066 Sum_probs=103.4
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 008276 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354 (571)
Q Consensus 275 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 354 (571)
....+|.+|+.+++.+.... ....-|..+...|...|+++.|+++|.+. ..++-.|.+|.+.|+++.|.
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHH
Confidence 34445555555555554432 22233445555566666666666555432 12334455566666666666
Q ss_pred HHHhhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 008276 355 TVFDQMRCQDV--VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL 432 (571)
Q Consensus 355 ~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 432 (571)
++-++...|.. ..|-.-..-+-++|++.+|.++|-... .|+. .|..|-+.|..+..+++.++-.-.
T Consensus 812 kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d--- 879 (1636)
T KOG3616|consen 812 KLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD--- 879 (1636)
T ss_pred HHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh---
Confidence 66555554422 234333444455566665555553321 1222 234455556656555555443211
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512 (571)
Q Consensus 433 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 512 (571)
.-..+...+..-|...|++..|..-|-+.+ -|.+-++.|...+-+++|.++.+ ..+-.+..-.....++-
T Consensus 880 -~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayriak---tegg~n~~k~v~flwak 949 (1636)
T KOG3616|consen 880 -HLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAK---TEGGANAEKHVAFLWAK 949 (1636)
T ss_pred -hhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHh---ccccccHHHHHHHHHHH
Confidence 111333445555666666666666655543 24444455555555555443322 22222333333333333
Q ss_pred HhcCCHHHHHHHHHH
Q 008276 513 AKAGRWGDVKRVRKF 527 (571)
Q Consensus 513 ~~~g~~~~A~~~~~~ 527 (571)
.-.| +.|.+++.+
T Consensus 950 sigg--daavkllnk 962 (1636)
T KOG3616|consen 950 SIGG--DAAVKLLNK 962 (1636)
T ss_pred hhCc--HHHHHHHHh
Confidence 3333 556666654
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.19 E-value=4.8e-07 Score=89.06 Aligned_cols=420 Identities=13% Similarity=0.063 Sum_probs=229.8
Q ss_pred cCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-cccHH
Q 008276 59 HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD-CYTYP 134 (571)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~ 134 (571)
.+.-++.+|..|--++..+|+++.+.+.|+.... .....|+.+...+...|.-..|+.+++.-....-+|+ ...+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3444666666666666777777777777766543 2344577777777777777777777766544321232 22222
Q ss_pred HHHHHhh-cCCChHHHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhC
Q 008276 135 CVLKACS-GSNSLLVGLQIHCSVVKVG--L--DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQN 209 (571)
Q Consensus 135 ~li~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 209 (571)
..-+.|. +.+..++++.+..+++... . ......|..+.-+|...-. +.+..+ .+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~~s--------eR~ 457 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANLKS--------ERD 457 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCChH--------HHH
Confidence 2222333 3455555555555554411 0 1112222222222221100 000000 000
Q ss_pred CCchHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHH
Q 008276 210 GRFDEALDVCREMESL-RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288 (571)
Q Consensus 210 g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 288 (571)
....++++.+++..+. +-.|+...|..+-.+..+.-....+.+++.+.-....+...|..|.-.+...+++.+|+.+.+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 1123444455554443 233444444444444444333333334444444344567778888888888888888888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHH---------------------cC-------CCCChhHHHHH
Q 008276 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER---------------------KK-------LQPNLRLENAL 340 (571)
Q Consensus 289 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------~~-------~~~~~~~~~~l 340 (571)
...+.- .-|......-+..-...++.+++......+.. .| ......++..+
T Consensus 538 ~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l 616 (799)
T KOG4162|consen 538 AALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL 616 (799)
T ss_pred HHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence 765431 01111111111111123333333332222111 00 01112222222
Q ss_pred HHHHHhcC---CHHHHHHHHhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 008276 341 VDMYAKCG---SLTEARTVFDQMRCQD------VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411 (571)
Q Consensus 341 ~~~~~~~~---~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 411 (571)
.......+ ..+.....+.....|+ ...|......+.+.++.++|...+.+.... .+-....|......+.
T Consensus 617 s~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 617 SSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLE 695 (799)
T ss_pred HHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHH
Confidence 22111111 1111111111111232 224666777888999999999888888773 2335557777778888
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 008276 412 HAGLLEEGRYYFKIMTEQYKLVP-RIEHFACLVDLLGRAGKVEEAYD--LIKQM-PMEP-NERIWGSLVAACCLYSNMDI 486 (571)
Q Consensus 412 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 486 (571)
..|.+++|.+.|..... +.| ++....++..++.+.|+..-|.. ++..+ .+.| +...|-.+...+.+.|+.+.
T Consensus 696 ~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 89999999999998874 344 45778899999999998777776 77777 6777 78899999999999999999
Q ss_pred HHHHHHHHHhhCCCCch
Q 008276 487 GILAADHIFHLAPNQSG 503 (571)
Q Consensus 487 A~~~~~~~~~~~p~~~~ 503 (571)
|...|+.+.++.+.+|.
T Consensus 773 Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 773 AAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHhhccCCCc
Confidence 99999999999876654
No 81
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=8.5e-08 Score=83.43 Aligned_cols=354 Identities=10% Similarity=0.014 Sum_probs=187.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCC--CCchhHHH-HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCC
Q 008276 168 GNGLVAMYGKCGCLKEARRVLNDMPS--KDVVTWNS-MVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244 (571)
Q Consensus 168 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 244 (571)
.+.|..+|....++..|-..++++.. |...-|.. -...+.+.+.+..|+++...|... |.-..-..-+.+..+-
T Consensus 47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkY 123 (459)
T KOG4340|consen 47 LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKY 123 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhc
Confidence 33344444444444444444444432 21111111 123334444555555555444321 2222222222233333
Q ss_pred CCccHHHHHHHHhhCC-CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHH
Q 008276 245 SPENVLSVKEMFLKLD-NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR 323 (571)
Q Consensus 245 ~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 323 (571)
...++..++.+.++.. +.+..+.+.......+.|+++.|.+-|....+-+---....|+..+ +..+.++++.|.+...
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHIS 202 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHH
Confidence 3333444555555554 3445555555666677888888888888876653333345565555 4456678888888888
Q ss_pred HHHHcCCCC-------------Ch---------------hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHH
Q 008276 324 YVERKKLQP-------------NL---------------RLENALVDMYAKCGSLTEARTVFDQMRC-----QDVVSWTS 370 (571)
Q Consensus 324 ~~~~~~~~~-------------~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 370 (571)
++++.|++. |. ..+|.-...+.+.++.+.|.+.+-.|+. -|++|...
T Consensus 203 EIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN 282 (459)
T KOG4340|consen 203 EIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHN 282 (459)
T ss_pred HHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhH
Confidence 887765421 11 1222233345678999999999999974 46777665
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hc
Q 008276 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG-RA 449 (571)
Q Consensus 371 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 449 (571)
+.-. .-.+++-+..+-+.-+..... -...||..++-.||+..-++.|..++.+-....-.-.+...|+ +++++. -.
T Consensus 283 ~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~q 359 (459)
T KOG4340|consen 283 QALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQ 359 (459)
T ss_pred HHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCC
Confidence 5432 224556666666666666432 2455888899999999988888888754322100012333343 344443 34
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC----HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 008276 450 GKVEEAYDLIKQMPMEPNERIWGSLVAAC-CLYSN----MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV 524 (571)
Q Consensus 450 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~-~~~g~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 524 (571)
-..++|.+-++.+........-...+... .+..+ ...+++-|++.+++-- .+....++.|++..++..+.++
T Consensus 360 T~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~ 436 (459)
T KOG4340|consen 360 TAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKI 436 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHH
Confidence 46666666555541000000011111111 11222 2244455555555441 1556677889999999999999
Q ss_pred HHHHHhC
Q 008276 525 RKFMNSK 531 (571)
Q Consensus 525 ~~~m~~~ 531 (571)
|..-.+-
T Consensus 437 Fr~Svef 443 (459)
T KOG4340|consen 437 FRKSVEF 443 (459)
T ss_pred HHHHHhh
Confidence 9876543
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.17 E-value=2.2e-06 Score=82.84 Aligned_cols=195 Identities=12% Similarity=-0.002 Sum_probs=85.3
Q ss_pred hhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHHHcCChhHHH
Q 008276 39 DKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYVNNYLYYDAL 115 (571)
Q Consensus 39 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~ 115 (571)
...|+.++|......-+ ... ..+.+-|..+.-.+..-.++++|+++|..... .|...|.-+.-.-++.|+++...
T Consensus 52 ~~lg~~~ea~~~vr~gl-r~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGL-RND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHh-ccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 33444555544444443 221 22333444444444444455555555543321 24444444444444444555544
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCC-CCchhHHHHH------HHHHHhCCCHHHHHHHH
Q 008276 116 HVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL-DYNLFNGNGL------VAMYGKCGCLKEARRVL 188 (571)
Q Consensus 116 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l------~~~~~~~g~~~~A~~~~ 188 (571)
+....+.+.. +-....|..+..+.--.|+...|..++++..+... .|+...+.-. .....+.|..++|.+.+
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4444444421 11223344444444455555555555555554431 2333332221 12234455555555555
Q ss_pred ccCCCC--Cch-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008276 189 NDMPSK--DVV-TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238 (571)
Q Consensus 189 ~~~~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 238 (571)
...... |-. .-..-...+.+.++.++|..++..++.. .||..-|...+
T Consensus 209 ~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l 259 (700)
T KOG1156|consen 209 LDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGL 259 (700)
T ss_pred HhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHH
Confidence 444321 111 1223334455556666666666665553 34444443333
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.16 E-value=6.8e-08 Score=95.27 Aligned_cols=176 Identities=13% Similarity=0.062 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHc----C----------CCCChh--HHHHHHHHHH
Q 008276 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK----K----------LQPNLR--LENALVDMYA 345 (571)
Q Consensus 282 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~ 345 (571)
.+..++..+...|+++ +|+.+-..|.......-...++...... + -+|+.. ++..+...|-
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 3445566666777543 4444444455444444445555444321 0 123332 3344566677
Q ss_pred hcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHH
Q 008276 346 KCGSLTEARTVFDQMRC--QD-VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422 (571)
Q Consensus 346 ~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 422 (571)
..|++++|.++++...+ |. +..|..-...+-+.|++.+|.+.++..+.... -|...-+..+..+.+.|+.++|..+
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77888888888877664 33 44677777777788888888888887777432 2555555566677778888888888
Q ss_pred HHHHHHhcCCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276 423 FKIMTEQYKLVPRIE--------HFACLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 423 ~~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
+....+. +..|... ...-...+|.+.|++..|++-|..+
T Consensus 285 ~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 285 ASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7777654 3222221 1133456777777777777665544
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=1.5e-08 Score=98.64 Aligned_cols=253 Identities=17% Similarity=0.167 Sum_probs=141.7
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHccCCC----------CCch-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH
Q 008276 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPS----------KDVV-TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232 (571)
Q Consensus 164 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 232 (571)
-..+...|...|...|+++.|+.+++...+ +.+. ..+.+...|...+++++|..+|+++..
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~-------- 269 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT-------- 269 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--------
Confidence 345666688999999999999999886643 2222 344567788899999999999998854
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC
Q 008276 233 TMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL 312 (571)
Q Consensus 233 t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 312 (571)
.-+..+-...+.-..+++.|..+|.+.|++++|..+++...+-
T Consensus 270 ------------------i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I------------------- 312 (508)
T KOG1840|consen 270 ------------------IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI------------------- 312 (508)
T ss_pred ------------------HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-------------------
Confidence 1112222222223456777888888888888888887766531
Q ss_pred CchHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 008276 313 SALLLGRKIHRYVERKKLQPNL-RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM 391 (571)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 391 (571)
++..... ..|.+ ..++.+...+...+++++|..++.. +.+++...
T Consensus 313 ---------~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~------------------------al~i~~~~ 358 (508)
T KOG1840|consen 313 ---------YEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQK------------------------ALKIYLDA 358 (508)
T ss_pred ---------HHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHH------------------------HHHHHHhh
Confidence 1110000 01111 1122233344444444444444322 11111111
Q ss_pred HHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 008276 392 LMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQY-----KLVPR-IEHFACLVDLLGRAGKVEEAYDLIKQM-- 462 (571)
Q Consensus 392 ~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 462 (571)
... ..|+ ..+++.+...|.+.|++++|.++++++.... +..+. ...++.+...|.+.++.++|.++|.+.
T Consensus 359 ~g~-~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 359 PGE-DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred ccc-cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 010 0111 1255666666666666666666666554431 11111 234555666666666666666665544
Q ss_pred ------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 463 ------PMEPN-ERIWGSLVAACCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 463 ------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (571)
+..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22333 34677778888888888888887777664
No 85
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.15 E-value=2.2e-07 Score=82.53 Aligned_cols=304 Identities=14% Similarity=0.067 Sum_probs=215.5
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHH---HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV---AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240 (571)
Q Consensus 164 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 240 (571)
++.-.-.+...+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.=+.+.++ ++||-.. ..+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~-ARi--- 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMA-ARI--- 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHH-HHH---
Confidence 3444455677788889999999999888887777776654 567888888888888888776 3666211 011
Q ss_pred hcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC------------H--HHHHHHH
Q 008276 241 VTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN------------A--ISVASVL 306 (571)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~------------~--~~~~~ll 306 (571)
.-...+.+.|.++.|..=|+..++....-+ . ......+
T Consensus 111 ----------------------------QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql 162 (504)
T KOG0624|consen 111 ----------------------------QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQL 162 (504)
T ss_pred ----------------------------HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHH
Confidence 112345667777777777777766532110 0 1122334
Q ss_pred HHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHH
Q 008276 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR---CQDVVSWTSMISAYGMSGQGYD 383 (571)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~ 383 (571)
..+...|+...++.....+++.. +.+...+..-..+|...|++..|+.=++... ..+..++.-+-..+-..|+.+.
T Consensus 163 ~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHH
Confidence 45667788888888888888865 5677888888889999999999987766654 3567777777777888899999
Q ss_pred HHHHHHHHHHCCCCCCHHH-H---HHH---------HHHhhcCCCHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHH
Q 008276 384 AVALFSKMLMSGLCPDSIA-F---VSV---------LSACSHAGLLEEGRYYFKIMTEQYKLVPR-----IEHFACLVDL 445 (571)
Q Consensus 384 a~~~~~~m~~~g~~p~~~~-~---~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~ 445 (571)
++...++.++ +.||... | ..+ +......++|.++.+..+...+. .|. ...+..+-.+
T Consensus 242 sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 242 SLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTC 316 (504)
T ss_pred HHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeec
Confidence 9998888888 6777652 2 111 11234567788888888877754 333 2334556667
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 008276 446 LGRAGKVEEAYDLIKQM-PMEPN-ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507 (571)
Q Consensus 446 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 507 (571)
+...|++.+|+....+. .+.|+ ..++..-..+|.--..++.|+.-|+++.+.++++..+-..
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 77888999999988887 67775 7788888888988899999999999999999888665443
No 86
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.14 E-value=1.1e-06 Score=84.75 Aligned_cols=367 Identities=11% Similarity=0.043 Sum_probs=173.6
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHh
Q 008276 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQ 208 (571)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 208 (571)
.|+.+.-.+....++++|...+......+ +.|...+..+.-.-+..|+++.....-....+ .....|..++.++.-
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL 155 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 33333333333444444444444444332 22333333333333333444433333322222 234467777777777
Q ss_pred CCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHH
Q 008276 209 NGRFDEALDVCREMESLR-IKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287 (571)
Q Consensus 209 ~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 287 (571)
.|+...|..++++..+.. -.|+...+......+ --.......|.+++|++.+
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~L---------------------------y~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLL---------------------------YQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH---------------------------HHHHHHHHcccHHHHHHHH
Confidence 888888888888777643 234444332221110 0112334455555555554
Q ss_pred HHHHHCCCCCCHHHH-HHHHHHhccCCchHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHhcCCHHHHH-HHHhhCCC--
Q 008276 288 LQMEVHGIEPNAISV-ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL-ENALVDMYAKCGSLTEAR-TVFDQMRC-- 362 (571)
Q Consensus 288 ~~m~~~g~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~-~~~~~~~~-- 362 (571)
..-... ..|...+ ..-...+.+.+++++|..++..++..+ ||... |..+..++.+-.+.-++. .+|....+
T Consensus 209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 433221 1122111 122233455666666666666666653 33333 333333443222222222 44444332
Q ss_pred CChh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHH----hc-------
Q 008276 363 QDVV-SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE----QY------- 430 (571)
Q Consensus 363 ~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~------- 430 (571)
|-.. .-..=+.......-.+..-+++..+.+.|+++-...+.++ +-.....+-..++.-.+.. ..
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~ 361 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDD 361 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccc
Confidence 0000 0000011111112223344555666666665433332222 2111111111111111111 00
Q ss_pred --CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 008276 431 --KLVPRI--EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNER-IWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY 504 (571)
Q Consensus 431 --~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 504 (571)
.-+|.. .++..++..+-+.|+++.|..+++.. +-.|+.. .|..-.+.+...|++++|...++++.+++..|..+
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 013443 33455667777788888888888776 5556433 44444566777788888888888888887666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008276 505 YVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533 (571)
Q Consensus 505 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 533 (571)
-..-+.-..++.+.++|.++....-..|.
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 55667777778888888877776655553
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=5.2e-08 Score=81.89 Aligned_cols=193 Identities=11% Similarity=0.009 Sum_probs=97.9
Q ss_pred HhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHH
Q 008276 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDA 384 (571)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 384 (571)
.|...|+...|..-+++.++.+ +.+..++..+...|.+.|+.+.|.+.|+...+ .+-...|.....+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3444444444444444444433 23334444444555555555555555554432 2334455555555556666666
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 008276 385 VALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM- 462 (571)
Q Consensus 385 ~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 462 (571)
...|++....-.-|. ..+|..+.-+..+.|+.+.|...|++..+. .+........+.....+.|++-.|..+++..
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 666665555322222 225555555555666666666666665542 1222344445555556666666666665554
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 008276 463 -PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503 (571)
Q Consensus 463 -~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 503 (571)
...++.......|..-...||-+.+-+.=.++.+..|.+..
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 22345555555555555566666655555555555555443
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=3.9e-06 Score=83.17 Aligned_cols=340 Identities=11% Similarity=0.046 Sum_probs=215.5
Q ss_pred HhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC-----------CCh-hhHHHHHHHH
Q 008276 38 LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN-----------KNV-VFFNVLIRSY 105 (571)
Q Consensus 38 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~-~~~~~li~~~ 105 (571)
|.-.|+++.|.+..+.+. +-.+|..+.++|.+.++++-|.-++-.|.. .|. ..-....-..
T Consensus 738 yvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence 344588888887777665 556899999999999988888888877753 111 2223334445
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHH
Q 008276 106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR 185 (571)
Q Consensus 106 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 185 (571)
...|..++|..+|.+-++. ..|=+.|-..|.+++|.++.+.--+.. =..||.....-+-..++++.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHH
Confidence 6778899999999888763 233444556788999888876432221 1345555566666778888888
Q ss_pred HHHccCCC-----------------------CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 008276 186 RVLNDMPS-----------------------KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242 (571)
Q Consensus 186 ~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 242 (571)
+.|++... +|...|.-....+-..|+.+.|+.+|...++ |-.+++..+
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 88876531 3555666677777778999999999888764 334445455
Q ss_pred CCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhc------------
Q 008276 243 NTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG------------ 310 (571)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~------------ 310 (571)
-.|. .++|..+-++. .|..+...|.+.|-+.|++.+|...|.+.+. |...|+.|-
T Consensus 950 ~qGk--~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nla 1016 (1416)
T KOG3617|consen 950 IQGK--TDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLA 1016 (1416)
T ss_pred eccC--chHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHH
Confidence 5555 66666665543 3567788899999999999999999987653 222222221
Q ss_pred ---cCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------------CChhHHHHHHH
Q 008276 311 ---DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--------------QDVVSWTSMIS 373 (571)
Q Consensus 311 ---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~li~ 373 (571)
...+.-.|-++|++. |. -+...+..|-+.|.+.+|+++-=+-.+ .|+...+...+
T Consensus 1017 l~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred hhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 122333344444432 21 122334567777887777765322221 36666777777
Q ss_pred HHHhcCChHHHHHHHHHHHH----------CC----------------CCCCH----HHHHHHHHHhhcCCCHHHHHHHH
Q 008276 374 AYGMSGQGYDAVALFSKMLM----------SG----------------LCPDS----IAFVSVLSACSHAGLLEEGRYYF 423 (571)
Q Consensus 374 ~~~~~~~~~~a~~~~~~m~~----------~g----------------~~p~~----~~~~~l~~~~~~~~~~~~a~~~~ 423 (571)
.++...++++|..++-..++ .| -.|+. .....+...|.++|.+..|-+-|
T Consensus 1089 FF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 77777777777776644322 11 11222 24556667778888887777666
Q ss_pred HHH
Q 008276 424 KIM 426 (571)
Q Consensus 424 ~~~ 426 (571)
-+.
T Consensus 1169 TQA 1171 (1416)
T KOG3617|consen 1169 TQA 1171 (1416)
T ss_pred hhh
Confidence 554
No 89
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=5.7e-09 Score=98.97 Aligned_cols=216 Identities=13% Similarity=0.084 Sum_probs=171.5
Q ss_pred hccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHH
Q 008276 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAV 385 (571)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 385 (571)
+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+.++.+ .|....-.|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356677888888888877765 55677788887778888888888888887765 35566777777888888888899
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-----------HHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008276 386 ALFSKMLMSGLCPDSIAFVSVL-----------SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454 (571)
Q Consensus 386 ~~~~~m~~~g~~p~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (571)
+.+++-+... |.. ..+. ..+.....+....++|-.+....+..+|+.+...|.-.|.-.|.+++
T Consensus 374 ~~L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9888876532 111 1111 22333445566677777776655666888999999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 455 AYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 455 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
|.+.|+.+ .++| |...||-|...+....+.++|+..|.+++++.|....++..|+-.|...|.|++|...|=+.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999988 7788 7889999999999999999999999999999999999999999999999999999998776653
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.6e-05 Score=80.66 Aligned_cols=156 Identities=17% Similarity=0.256 Sum_probs=113.8
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 008276 348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427 (571)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 427 (571)
+.++.|.++-++.. .+..|+.+..+-.+.|...+|++-|-+. -|+..|..+++.+.+.|.|++-.+++....
T Consensus 1089 ~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34444444444443 3457999999999999999999877542 356689999999999999999999998887
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 008276 428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507 (571)
Q Consensus 428 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 507 (571)
++ .-.|... +.|+-+|++.++..+.++++. .|+......+..-|...|.++.|.-+|.. .+-|..
T Consensus 1161 kk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~ 1225 (1666)
T KOG0985|consen 1161 KK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAK 1225 (1666)
T ss_pred Hh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHH
Confidence 76 5566665 468999999999988877663 46666667777777778888877777663 344666
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 008276 508 LSNIYAKAGRWGDVKRVRK 526 (571)
Q Consensus 508 l~~~~~~~g~~~~A~~~~~ 526 (571)
|+..+...|.+..|....+
T Consensus 1226 La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 6666666666666654433
No 91
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=2.2e-05 Score=79.78 Aligned_cols=453 Identities=13% Similarity=0.142 Sum_probs=263.0
Q ss_pred cCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC------------CCh
Q 008276 28 LLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN------------KNV 95 (571)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~ 95 (571)
....+.|..-..+..++......++..+ +.|.. ++.++|+|.+.|...++-.+ +.+++-+- +|+
T Consensus 838 q~~~deLv~EvEkRNRLklLlp~LE~~i-~eG~~-d~a~hnAlaKIyIDSNNnPE--~fLkeN~yYDs~vVGkYCEKRDP 913 (1666)
T KOG0985|consen 838 QFPVDELVEEVEKRNRLKLLLPWLESLI-QEGSQ-DPATHNALAKIYIDSNNNPE--RFLKENPYYDSKVVGKYCEKRDP 913 (1666)
T ss_pred cCChHHHHHHHHhhhhHHHHHHHHHHHH-hccCc-chHHHhhhhheeecCCCChH--HhcccCCcchhhHHhhhhcccCC
Confidence 4455667777778888888889999998 88876 99999999999997654322 12222110 111
Q ss_pred -----------------------hhHHHHHHHHHHcCChhHHHHHH-----------HHHHhCCC--CCCcccHHHHHHH
Q 008276 96 -----------------------VFFNVLIRSYVNNYLYYDALHVY-----------KNMSVHGF--DPDCYTYPCVLKA 139 (571)
Q Consensus 96 -----------------------~~~~~li~~~~~~~~~~~A~~~~-----------~~m~~~g~--~p~~~~~~~li~~ 139 (571)
..|....+.+.+..+.+--.+++ ++..+.++ ..|+......+++
T Consensus 914 ~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkA 993 (1666)
T KOG0985|consen 914 HLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKA 993 (1666)
T ss_pred ceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHH
Confidence 12333333344444433222222 11222111 1233344445555
Q ss_pred hhcCCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHH
Q 008276 140 CSGSNSLLVGLQIHCSVVKVG--LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217 (571)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 217 (571)
+...+-+.+-.++++.+.-.. +..+....|.|+-...+ .+..+..+..+++..-|.. .+...+..++-+++|..
T Consensus 994 fMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~---~ia~iai~~~LyEEAF~ 1069 (1666)
T KOG0985|consen 994 FMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP---DIAEIAIENQLYEEAFA 1069 (1666)
T ss_pred HHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch---hHHHHHhhhhHHHHHHH
Confidence 555555556666666554322 12222333333333332 2334444444444432221 13445566777888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCC
Q 008276 218 VCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297 (571)
Q Consensus 218 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 297 (571)
+|++. ..+....+.++..... ++.|.+.-++..+ +..|+.+..+-.+.|...+|++-|-+ .-
T Consensus 1070 ifkkf-----~~n~~A~~VLie~i~~-----ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik------ad 1131 (1666)
T KOG0985|consen 1070 IFKKF-----DMNVSAIQVLIENIGS-----LDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK------AD 1131 (1666)
T ss_pred HHHHh-----cccHHHHHHHHHHhhh-----HHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh------cC
Confidence 88775 3455556666655444 7778887777776 45799999999999999999887743 24
Q ss_pred CHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhH----------
Q 008276 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS---------- 367 (571)
Q Consensus 298 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------- 367 (571)
|...|..++..+.+.|.+++..+++....+..-.|.+. +.|+-+|++.+++.+.++++.- ||..-
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~g---pN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAG---PNVANIQQVGDRCFE 1206 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcC---CCchhHHHHhHHHhh
Confidence 66789999999999999999999999998876666554 5688899999998887766532 33333
Q ss_pred ----------------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 008276 368 ----------------WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431 (571)
Q Consensus 368 ----------------~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 431 (571)
|..|...+...|++..|...-++. -+..||..+-.+|...+.+.-|. |-.. +
T Consensus 1207 ~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL-~ 1274 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGL-N 1274 (1666)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCc-e
Confidence 444444455555555554433321 23446666666665554443321 1100 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 008276 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509 (571)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 509 (571)
+.....-..-+++.|...|-+++-+.+++.. |.+- ....|+.|.-.|.+. ++++-.+.++-....- -.--++
T Consensus 1275 iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRv-----NipKvi 1348 (1666)
T KOG0985|consen 1275 IIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRV-----NIPKVI 1348 (1666)
T ss_pred EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhc-----chHHHH
Confidence 1223344566777888888888888887765 5443 334455555444443 4444444444433321 112355
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 008276 510 NIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 510 ~~~~~~g~~~~A~~~~~~m~ 529 (571)
.++.++.-|.+..-++....
T Consensus 1349 RA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1349 RAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 66666666766666655443
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=4.5e-09 Score=96.44 Aligned_cols=150 Identities=14% Similarity=0.130 Sum_probs=61.4
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----CCCHHHH
Q 008276 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH----AGLLEEG 419 (571)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a 419 (571)
+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+.+|
T Consensus 112 ~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp HCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHH
T ss_pred HHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHHH
Confidence 33445555555444443 3344444444455555555555555555544 22222 22222222211 1234455
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 008276 420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNM-DIGILAADHIFH 496 (571)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 496 (571)
..+|+++.+ ...+++.+.+.+..+....|++++|.+++.+. ...| ++.++..++......|+. +.+.+.+.++..
T Consensus 187 ~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 187 FYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 555555433 23344444444444455555555555544443 2222 333333344443444443 334444444444
Q ss_pred hCCC
Q 008276 497 LAPN 500 (571)
Q Consensus 497 ~~p~ 500 (571)
..|+
T Consensus 265 ~~p~ 268 (290)
T PF04733_consen 265 SNPN 268 (290)
T ss_dssp HTTT
T ss_pred hCCC
Confidence 4444
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.1e-06 Score=83.10 Aligned_cols=437 Identities=10% Similarity=-0.029 Sum_probs=241.1
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC--C-ChhhHHHHHHHHHHcC
Q 008276 33 ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--K-NVVFFNVLIRSYVNNY 109 (571)
Q Consensus 33 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~ 109 (571)
.-.++....|+++.|...|...+ ...++ +-..|+.-..+|++.|++++|.+=-....+ | -...|+....++.-.|
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai-~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAI-MLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHH-ccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 34566777899999999999888 66644 788888888899999999888765544433 2 2346888888888899
Q ss_pred ChhHHHHHHHHHHhCCCCCCc-ccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHH-----HHHHHhCCCHHH
Q 008276 110 LYYDALHVYKNMSVHGFDPDC-YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGL-----VAMYGKCGCLKE 183 (571)
Q Consensus 110 ~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-----~~~~~~~g~~~~ 183 (571)
++++|+.-|.+=.+. .|+. ..++-+..+. ..+.+. +. .--++..|..+ .+.+...-.+..
T Consensus 85 ~~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~----~~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~ 150 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEK--DPSNKQLKTGLAQAY----LEDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVK 150 (539)
T ss_pred cHHHHHHHHHHHhhc--CCchHHHHHhHHHhh----hHHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHH
Confidence 999999999887764 3443 3444454444 111110 00 00111122111 112222222222
Q ss_pred HHHHHccCCCCCchh---HHHHHHHHHhCCCchHHHHHHHHHHHCC-------CCCCHHHHHHHHHHhcCCCCccHHHHH
Q 008276 184 ARRVLNDMPSKDVVT---WNSMVAGYAQNGRFDEALDVCREMESLR-------IKPDADTMASLLPSVTNTSPENVLSVK 253 (571)
Q Consensus 184 A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g-------~~p~~~t~~~ll~~~~~~~~~~~~~a~ 253 (571)
-++.+...+. +... ...++.+.......+.- .+...| ..|. .-. ..+...+++-.
T Consensus 151 ~l~~~~~~p~-~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~--------~~~-~~~~~~~~d~~ 215 (539)
T KOG0548|consen 151 ILEIIQKNPT-SLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPC--------KQE-HNGFPIIEDNT 215 (539)
T ss_pred HHHHhhcCcH-hhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCcc--------ccc-CCCCCccchhH
Confidence 2222222211 0000 01111111111000000 000111 1111 000 00000000000
Q ss_pred HHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCC
Q 008276 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN 333 (571)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 333 (571)
+.-+ ...-......+.++.-+..+++.|++-+....+.. -+..-++....++...|.+......-....+.|.. .
T Consensus 216 ee~~--~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~ 290 (539)
T KOG0548|consen 216 EERR--VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-L 290 (539)
T ss_pred HHHH--HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-H
Confidence 0000 00012235567778888889999999998887754 34444555556678888777776666665555421 1
Q ss_pred hhHHH-------HHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHH
Q 008276 334 LRLEN-------ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVS 405 (571)
Q Consensus 334 ~~~~~-------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ 405 (571)
..-|+ .+..+|.+.++++.+...|.+...+... -+...+....+++....+...- +.|... -...
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~ 363 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEERE 363 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHH
Confidence 11222 2334566667788888877775431111 1122333444555555554443 333332 1222
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 008276 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-ERIWGSLVAACCLYSN 483 (571)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~ 483 (571)
-...+.+.|++..|...|.++++. .+.|...|....-+|.+.|.+..|++-.+.. ...|+ ...|.-=..++....+
T Consensus 364 kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 364 KGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 245667788899999888888874 3566788888888888888888888877766 44553 3345444555566778
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 008276 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514 (571)
Q Consensus 484 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 514 (571)
++.|++.|++.++.+|.+..+...+..++..
T Consensus 442 ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 442 YDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 8888889998888888887777777766654
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.99 E-value=4.5e-08 Score=89.88 Aligned_cols=244 Identities=9% Similarity=0.017 Sum_probs=154.4
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 008276 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353 (571)
Q Consensus 274 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (571)
+.-.|++..++.-.+ ........+......+.+++...|+.+.+. ..+.+.. .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344566666664444 222111112233444555666666654332 2332222 55555555554444443455566
Q ss_pred HHHHhhCC-CC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276 354 RTVFDQMR-CQ----DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428 (571)
Q Consensus 354 ~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 428 (571)
..-+++.. ++ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555443 22 2222222334566789999999887642 3566777788999999999999999999974
Q ss_pred hcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 008276 429 QYKLVPRIEHFACLVDLLGR----AGKVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS 502 (571)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 502 (571)
+..|. +...++.++.. .+.+.+|..+|+++ ...+++.+.+.+..++...|++++|..+++++.+.+|.++
T Consensus 160 ---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 160 ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp ---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred ---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 33443 33445554432 34689999999999 4457888889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCH-HHHHHHHHHHHhCC
Q 008276 503 GYYVLLSNIYAKAGRW-GDVKRVRKFMNSKG 532 (571)
Q Consensus 503 ~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~ 532 (571)
.+...++.+....|+. +.+.+++.+++...
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 9999999998999988 66788888887653
No 95
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.98 E-value=9e-06 Score=79.70 Aligned_cols=248 Identities=15% Similarity=0.141 Sum_probs=169.9
Q ss_pred HHHHHHHHhhCCCCChh--hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 008276 249 VLSVKEMFLKLDNKNLV--SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326 (571)
Q Consensus 249 ~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 326 (571)
+.++..+++.+...+.. -|..+.+.|...|+++.|.++|.+.- .+.-.|..|.+.|+++.|.++-.+..
T Consensus 748 w~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 748 WKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred hhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc
Confidence 77888888877755443 47778899999999999999996532 34556778999999999988866544
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 008276 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS--IAFV 404 (571)
Q Consensus 327 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~ 404 (571)
|.......|.+-..-+-+.|++.+|.+++-.+..|+. .|+.|-+.|..+..+++.++- .|+. .|-.
T Consensus 819 --~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~ 886 (1636)
T KOG3616|consen 819 --GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHK 886 (1636)
T ss_pred --CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHH
Confidence 4455666777777778889999999999999888875 467888999999998887663 3332 3566
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH-----HHHH------H
Q 008276 405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE-----RIWG------S 473 (571)
Q Consensus 405 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-----~~~~------~ 473 (571)
.+..-+...|++..|...|-+..+ |.+-+.+|...+.|++|-++-+.-+-. +. ..|. +
T Consensus 887 ~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~-n~~k~v~flwaksiggda 955 (1636)
T KOG3616|consen 887 HFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGA-NAEKHVAFLWAKSIGGDA 955 (1636)
T ss_pred HHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccc-cHHHHHHHHHHHhhCcHH
Confidence 677778888999999888766542 455667777777777777776654211 11 1111 1
Q ss_pred HHHHHHhcCCHH-------------HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 474 LVAACCLYSNMD-------------IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 474 l~~~~~~~g~~~-------------~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
.+..+-++|-.+ -|..+-+-..+ ...+..+..++..+...|++++|...+-+..+
T Consensus 956 avkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 956 AVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred HHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 112222333333 33333332222 22355777888888899999999777665543
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.96 E-value=6e-06 Score=80.18 Aligned_cols=259 Identities=9% Similarity=-0.095 Sum_probs=145.8
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHH---HHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 008276 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS---VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348 (571)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (571)
..+...|++++|.+.+++..+.. +.+...+.. ........+..+.+.+.+... ....+........+...+...|
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcC
Confidence 34556677777777777776642 223333321 111112234444444444431 1111222233344556677788
Q ss_pred CHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhhcCCCHHHHHHH
Q 008276 349 SLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL-CPDS--IAFVSVLSACSHAGLLEEGRYY 422 (571)
Q Consensus 349 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~l~~~~~~~~~~~~a~~~ 422 (571)
++++|...+++..+ .+...+..+...+...|++++|..++++...... .|+. ..|..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888877664 3455677777788888888888888887776421 1222 2355667777888888888888
Q ss_pred HHHHHHhcCCCCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008276 423 FKIMTEQYKLVPRIEHF-A--CLVDLLGRAGKVEEAYDL---IKQM----PMEPNERIWGSLVAACCLYSNMDIGILAAD 492 (571)
Q Consensus 423 ~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 492 (571)
++.+.......+..... + .++..+...|..+.+.+. .... ..............++...|+.+.|...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 88875321111222111 1 223333334432222222 1111 101111222345666778888999999888
Q ss_pred HHHhhCC---------CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 493 HIFHLAP---------NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 493 ~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
.+..... .........+.++...|++++|.+.+.+.....
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8766331 124455666777889999999999998887543
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.5e-06 Score=82.32 Aligned_cols=217 Identities=12% Similarity=0.069 Sum_probs=150.6
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hHHH-------HH
Q 008276 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV---VSWT-------SM 371 (571)
Q Consensus 302 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~-------~l 371 (571)
...+.++..+..+++.+.+-+....... -++..++....+|...|.+..+...-+...+..- .-|+ .+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3455666666777788888887777665 4555566666777777777666655544332111 1122 23
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcC
Q 008276 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRAG 450 (571)
Q Consensus 372 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 450 (571)
..+|.+.++++.++..|.+....-..|+.. .+....+++....+... -+.|.. .-...-...+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence 345666777888888888766643333221 22233444544444433 223433 11222366778899
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276 451 KVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528 (571)
Q Consensus 451 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 528 (571)
++..|+..+.++ ...| |...|..-..+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|++|.+.|++-
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 5566 78899999999999999999999999999999999999999999999999999999999987
Q ss_pred HhCC
Q 008276 529 NSKG 532 (571)
Q Consensus 529 ~~~~ 532 (571)
.+.+
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 6654
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.95 E-value=1.3e-06 Score=88.27 Aligned_cols=130 Identities=13% Similarity=0.029 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 008276 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA----CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV 475 (571)
Q Consensus 400 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 475 (571)
...|........+.+.+..|.....++..-....-+...|+ .+.+.+...|.++.|...+.......+......-+
T Consensus 967 ~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l 1046 (1238)
T KOG1127|consen 967 CFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDL 1046 (1238)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhH
Confidence 34555555555555555555555444322111122333333 34455566677776666555543333333322222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 476 AACCLYSNMDIGILAADHIFHLAPNQSG---YYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
.. .-.++++++.+.|+++..+..++.. ....++.+....+..+.|...+-+...
T Consensus 1047 ~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1047 TL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 22 3468899999999999987744433 344555666777888888887766654
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.93 E-value=9e-05 Score=81.72 Aligned_cols=263 Identities=15% Similarity=0.056 Sum_probs=170.7
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHhccCCchHHHHHHHHHHHHcCC---CCC--hhHHHHH
Q 008276 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNA----ISVASVLPACGDLSALLLGRKIHRYVERKKL---QPN--LRLENAL 340 (571)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l 340 (571)
+...+...|++++|...+++....-...+. .....+...+...|+++.|...+........ .+. ......+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 345566789999999999887653111121 2334455566778999999998888765311 111 2344456
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC-------CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC--HHHHHH
Q 008276 341 VDMYAKCGSLTEARTVFDQMRC-------QD----VVSWTSMISAYGMSGQGYDAVALFSKMLMSG--LCPD--SIAFVS 405 (571)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~--~~~~~~ 405 (571)
...+...|+++.|...+++... ++ ...+..+...+...|++++|...+.+..... ..+. ...+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 6677889999999888776542 11 1234455566777899999999988876531 1122 234555
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHhCCC-C-CCH----HHHHHH
Q 008276 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF-----ACLVDLLGRAGKVEEAYDLIKQMPM-E-PNE----RIWGSL 474 (571)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l 474 (571)
+.......|+++.|.+.++..............+ ...+..+...|+.+.|.+.+..... . ... ..+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 6667778899999999888875431111111111 1122445568899999999877621 1 111 113456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 475 VAACCLYSNMDIGILAADHIFHLA------PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
..++...|++++|...++++.... +....++..++.++...|+.++|...+.+..+..
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 667788999999999999987743 1223467788889999999999999999887543
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=5.7e-07 Score=78.40 Aligned_cols=154 Identities=11% Similarity=0.086 Sum_probs=83.3
Q ss_pred HHHHHHHhhcCCChHHHHHHHcccCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHH-HHHHhhc
Q 008276 67 GLKLMRTYGACGQMVDTRHVFDEITNK---NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC-VLKACSG 142 (571)
Q Consensus 67 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~ 142 (571)
+.+.+..+.+..++++|++++..-.++ +....+.|..+|-...++..|-+.|+++... -|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 445555555666666666666544432 3344555566666666666666666666553 344333321 1233445
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHH--HHHHhCCCHHHHHHHHccCCC-CCchhHHHHHHHHHhCCCchHHHHHH
Q 008276 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLV--AMYGKCGCLKEARRVLNDMPS-KDVVTWNSMVAGYAQNGRFDEALDVC 219 (571)
Q Consensus 143 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~ 219 (571)
.+.+..|+++...|... ++...-..-+ ......+++..+..++++.+. .+..+.+.......+.|+++.|++-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 55666666666555431 1111111111 122345666677777777663 55555555556666777777777777
Q ss_pred HHHHHC
Q 008276 220 REMESL 225 (571)
Q Consensus 220 ~~m~~~ 225 (571)
+...+-
T Consensus 168 qaAlqv 173 (459)
T KOG4340|consen 168 QAALQV 173 (459)
T ss_pred HHHHhh
Confidence 766653
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.89 E-value=2.7e-07 Score=80.02 Aligned_cols=118 Identities=11% Similarity=0.029 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHH
Q 008276 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAAC-CLYSN--MDIG 487 (571)
Q Consensus 413 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~A 487 (571)
.++.+++...++...+ ..+.+...|..+...|...|++++|...+++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4555666666666655 33556677777777777777777777777776 4455 556666666653 45565 4777
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 488 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
..+++++++.+|+++.++..++..+...|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 777777777777777777777777777777777777777776654
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.89 E-value=2.8e-07 Score=83.52 Aligned_cols=181 Identities=12% Similarity=0.005 Sum_probs=114.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-h---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----
Q 008276 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRC--QD-V---VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI---- 401 (571)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---- 401 (571)
.....+..+...+...|+++.|...|+++.+ |+ . ..+..+..++...|++++|+..++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 3445555666677777777777777776653 32 1 34566667777777777777777777763 33211
Q ss_pred HHHHHHHHhhcC--------CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 008276 402 AFVSVLSACSHA--------GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473 (571)
Q Consensus 402 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 473 (571)
++..+..++... |+++.|.+.++.+...+ +.+...+..+..... .... . ......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~---~--------~~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNR---L--------AGKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHH---H--------HHHHHH
Confidence 344444444433 56677777777776541 112222221111110 0000 0 001124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 474 LVAACCLYSNMDIGILAADHIFHLAPNQ---SGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
+...+...|++++|+..++++++..|++ +..+..++.++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566888999999999999999987765 478999999999999999999999988754
No 103
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.87 E-value=5e-06 Score=84.26 Aligned_cols=457 Identities=13% Similarity=0.032 Sum_probs=264.8
Q ss_pred hcCCCC-hhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCCccc
Q 008276 58 QHLHSN-PSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDPDCYT 132 (571)
Q Consensus 58 ~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~ 132 (571)
..+.++ ...|..|...|+...+...|.++|+..-+ .+...+......|++..+++.|..+.-..-+.. ...-..-
T Consensus 485 lrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~n 564 (1238)
T KOG1127|consen 485 LRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKEN 564 (1238)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhh
Confidence 344444 45788899999888888899999987655 466788889999999999999998844333221 0001112
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCch-hH--HHHHHHHHhC
Q 008276 133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV-TW--NSMVAGYAQN 209 (571)
Q Consensus 133 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~--~~li~~~~~~ 209 (571)
|..+--.+.+.++...+..-|+...+.. +-|...|..+..+|.++|++..|.++|.+...-++. .| --.....+..
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 3333334667888888888888887764 457889999999999999999999999887653332 22 2233445678
Q ss_pred CCchHHHHHHHHHHHC------CCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHH-HHHHHc-CCc-
Q 008276 210 GRFDEALDVCREMESL------RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI-AVYANN-SMP- 280 (571)
Q Consensus 210 g~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~-~~~~~~-g~~- 280 (571)
|++++|+..+...... +...-..++..+...+...+- ...+.+.+++. ...+...+ ...+.. -.+
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf--~~kavd~~eks----ie~f~~~l~h~~~~~~~~Wi 717 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGF--QKKAVDFFEKS----IESFIVSLIHSLQSDRLQWI 717 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH--hhhhhHHHHHH----HHHHHHHHHHhhhhhHHHHH
Confidence 9999999998877542 111111222211111111111 11111111111 11111111 110000 001
Q ss_pred --hHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCch---H---HHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cC
Q 008276 281 --AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL---L---LGRKIHRYVERKKLQPNLRLENALVDMYAK----CG 348 (571)
Q Consensus 281 --~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 348 (571)
..|..+|-+.. .. .|+......+..-....+.. + -+.+.+-.-.+ ...+..+|..|...|.+ .+
T Consensus 718 ~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~ 793 (1238)
T KOG1127|consen 718 VASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLG 793 (1238)
T ss_pred HHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcC
Confidence 11222222222 11 23322222222212122211 1 01111111111 11223333333333322 12
Q ss_pred ----CHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHH
Q 008276 349 ----SLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421 (571)
Q Consensus 349 ----~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 421 (571)
+...|...+....+ .+..+|+.|.-. ...|++.-+...|-+-+.. .+.+..+|..+.-.+....+++.|..
T Consensus 794 et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 794 ETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred CcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhH
Confidence 23356666665543 566677777655 6667888888888776664 23356688888888899999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHH-----
Q 008276 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-------PMEPNERIWGSLVAACCLYSNMDIGIL----- 489 (571)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~----- 489 (571)
.|...+. -.+.+...|..........|+.-++..+|..- +.-|+...|.+...-....|+.++-+.
T Consensus 872 af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 872 AFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 9998874 33345566666666667788888888888752 334566666555555556666665444
Q ss_pred -----HHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 490 -----AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 490 -----~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
.+++.....|++..+|...+..+.+.+.+.+|.+...+..
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4444455668889999999999999999999988877654
No 104
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=3.8e-05 Score=76.49 Aligned_cols=259 Identities=12% Similarity=0.037 Sum_probs=166.8
Q ss_pred CChhHHHHHHH--HhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhC-C-------C-CCCc
Q 008276 62 SNPSIGLKLMR--TYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-G-------F-DPDC 130 (571)
Q Consensus 62 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g-------~-~p~~ 130 (571)
.|..+...++. .|.-.|+.+.|.+..+.++. -..|..+.+.|.+..+.+-|.-.+-.|... | . .|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 46666677654 56778999999998887764 467999999999998888777666555321 1 1 222
Q ss_pred ccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC-CCchhHHHHHHHHHhC
Q 008276 131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS-KDVVTWNSMVAGYAQN 209 (571)
Q Consensus 131 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~ 209 (571)
.+=..+.-.....|.+++|+.++++-.+.. .|=..|-..|.+++|.++-+.-.. .=..+|......+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 222233334467899999999999887643 344567788999999998765433 1234677777777888
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHH
Q 008276 210 GRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289 (571)
Q Consensus 210 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (571)
++.+.|++.|++... |--..+..|.. + ....+...++.. |...|.-....+-..|+.+.|+.+|..
T Consensus 872 ~Di~~AleyyEK~~~----hafev~rmL~e-~-------p~~~e~Yv~~~~--d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGV----HAFEVFRMLKE-Y-------PKQIEQYVRRKR--DESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred ccHHHHHHHHHhcCC----hHHHHHHHHHh-C-------hHHHHHHHHhcc--chHHHHHHHHHHhcccchHHHHHHHHH
Confidence 999999999987532 11111111110 0 222233333333 334455555566667888888888876
Q ss_pred HHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 008276 290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361 (571)
Q Consensus 290 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (571)
.+. |-.+++..+-.|+.++|-++-++ .-|....-.|...|-..|++.+|..+|.+..
T Consensus 938 A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 938 AKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 653 44556666777777777777654 2244445557777777778777777776653
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.82 E-value=1.5e-07 Score=77.17 Aligned_cols=123 Identities=7% Similarity=-0.003 Sum_probs=85.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 008276 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-P 463 (571)
Q Consensus 385 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 463 (571)
..++++..+ +.|+. +......+...|++++|...|+.+.. --+.+...+..+..++...|++++|...|++. .
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 345555555 44543 34456666777888888888877765 23445667777777777888888888887776 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276 464 MEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513 (571)
Q Consensus 464 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 513 (571)
..| +...+..+..++...|++++|+..|+++++..|+++..+...+.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 445 56677777777777888888888888888888877777776665543
No 106
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.82 E-value=1.3e-05 Score=71.53 Aligned_cols=256 Identities=11% Similarity=0.039 Sum_probs=186.0
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHhccCCchHHHHHHHHHHHHcCCCCC--hhHH----------
Q 008276 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA-SVLPACGDLSALLLGRKIHRYVERKKLQPN--LRLE---------- 337 (571)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~---------- 337 (571)
...|...|+...|+.=+...++ .+||-..-. .-...+.+.|.++.|..-|+.+++.....+ ...+
T Consensus 79 aT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~ 156 (504)
T KOG0624|consen 79 ATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHW 156 (504)
T ss_pred HHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHH
Confidence 4578888888888888888877 478754332 122346789999999999999987643211 1111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 008276 338 --NALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412 (571)
Q Consensus 338 --~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 412 (571)
...+..+...|+...|+.....+.+ -|...|..-..+|...|++..|+.=++..-+.. .-|..++.-+-..+..
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHh
Confidence 1234455667899999998888775 477788888999999999999999888877642 2345566666777788
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHhC-CCCCC--HHH---HHH
Q 008276 413 AGLLEEGRYYFKIMTEQYKLVPRIEH----FACL---------VDLLGRAGKVEEAYDLIKQM-PMEPN--ERI---WGS 473 (571)
Q Consensus 413 ~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~---~~~ 473 (571)
.|+.+.++...++.. .+.||... |..+ +......++|.++++-.++. ...|. ... +..
T Consensus 236 vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 236 VGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV 312 (504)
T ss_pred hhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence 899988888887776 45676522 2221 22344567777777777665 44554 222 333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
+-.++...|++.+|++...+++..+|++..++.--+.+|.-...+++|+.-|+...+.+
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 33455668999999999999999999999999999999999999999999998887654
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.78 E-value=3.3e-05 Score=85.10 Aligned_cols=325 Identities=9% Similarity=-0.058 Sum_probs=175.3
Q ss_pred hcCCChHHHHHHHcccCC----CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCC--C----CCCcc--cHHHHHHHhhc
Q 008276 75 GACGQMVDTRHVFDEITN----KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG--F----DPDCY--TYPCVLKACSG 142 (571)
Q Consensus 75 ~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~----~p~~~--~~~~li~~~~~ 142 (571)
...|+++.+...++.++. .+..........+...|+++++...++.....- . .+... ....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 344555555555555431 122222333344455566666666665543320 0 00000 01111122345
Q ss_pred CCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhCCCHHHHHHHHccCCC-------C--CchhHHHHHHHHHhC
Q 008276 143 SNSLLVGLQIHCSVVKVGLDYN----LFNGNGLVAMYGKCGCLKEARRVLNDMPS-------K--DVVTWNSMVAGYAQN 209 (571)
Q Consensus 143 ~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~ 209 (571)
.|+++.|...++.....-...+ ....+.+...+...|++++|...+++... + ...++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 5666666666665554211111 12233444455556666666665554432 1 012233444455556
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCC----ChhhHHHHHHHHHHcCCchHHHH
Q 008276 210 GRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK----NLVSWNVMIAVYANNSMPAEAVD 285 (571)
Q Consensus 210 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~ 285 (571)
|++++|...+++.... ......+ ....+..+...+...|++++|..
T Consensus 545 G~~~~A~~~~~~al~~------------------------------~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 594 (903)
T PRK04841 545 GFLQAAYETQEKAFQL------------------------------IEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQ 594 (903)
T ss_pred CCHHHHHHHHHHHHHH------------------------------HHHhccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6666666665554331 0100000 12234455667777899999999
Q ss_pred HHHHHHHCC--CCCC--HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCC-hhHH-----HHHHHHHHhcCCHHHHHH
Q 008276 286 LYLQMEVHG--IEPN--AISVASVLPACGDLSALLLGRKIHRYVERKKLQPN-LRLE-----NALVDMYAKCGSLTEART 355 (571)
Q Consensus 286 ~~~~m~~~g--~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~a~~ 355 (571)
.+.+..... ..+. ...+..+...+...|+++.|...+........... ...+ ...+..+...|+.+.|..
T Consensus 595 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 674 (903)
T PRK04841 595 CARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAAN 674 (903)
T ss_pred HHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHH
Confidence 988875431 1122 23344455567788999999998888765311111 1111 112244556789999999
Q ss_pred HHhhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhcCCCHHHHHHHH
Q 008276 356 VFDQMRCQDV-------VSWTSMISAYGMSGQGYDAVALFSKMLMS----GLCPDS-IAFVSVLSACSHAGLLEEGRYYF 423 (571)
Q Consensus 356 ~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~ 423 (571)
.+.....+.. ..+..+..++...|++++|...+++.... |..++. .+...+..++...|+.++|...+
T Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L 754 (903)
T PRK04841 675 WLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVL 754 (903)
T ss_pred HHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9877664221 11345667788899999999999887653 333322 35666677788999999999999
Q ss_pred HHHHHh
Q 008276 424 KIMTEQ 429 (571)
Q Consensus 424 ~~~~~~ 429 (571)
.+..+.
T Consensus 755 ~~Al~l 760 (903)
T PRK04841 755 LEALKL 760 (903)
T ss_pred HHHHHH
Confidence 988774
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.76 E-value=2.7e-07 Score=75.65 Aligned_cols=107 Identities=11% Similarity=-0.006 Sum_probs=92.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 008276 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLA 498 (571)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 498 (571)
.++++..+ +.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|+..|+++.+++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45555543 2344 3556788899999999999999988 5566 78889999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 499 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
|+++.++..++.++...|++++|+..+++..+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987655
No 109
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.76 E-value=3e-05 Score=75.24 Aligned_cols=266 Identities=11% Similarity=-0.013 Sum_probs=168.7
Q ss_pred hhhHHHHHHHHHHcCCchHHHHHHHHHHHCC-CCCCHHH-HHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHH--
Q 008276 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAIS-VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA-- 339 (571)
Q Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 339 (571)
...|..+...+...|+.+.+...+....... ..++... .......+...|+++.+..+++...+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 4567777788888888888877777655432 1223222 2222334677899999999999998874 334434331
Q ss_pred -HHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC
Q 008276 340 -LVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415 (571)
Q Consensus 340 -l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 415 (571)
........+....+.+.++.... | .......+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 11222234566666666665332 2 22344566678889999999999999999952 3345577888889999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH----H--HHHHHHHhcCCHHH
Q 008276 416 LEEGRYYFKIMTEQYKLVPRI--EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIW----G--SLVAACCLYSNMDI 486 (571)
Q Consensus 416 ~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~----~--~l~~~~~~~g~~~~ 486 (571)
+++|..++++........|+. ..|..+...+...|++++|..++++. ...|....+ + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999988642222333 34567888999999999999999987 223311111 1 22222333443332
Q ss_pred HHHH---HHHHHhhCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 487 GILA---ADHIFHLAPN--QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 487 A~~~---~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
+... ........|. ........+.++...|+.++|...++.+...
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 2222 1111111122 1222336777888999999999999998754
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.74 E-value=1.7e-06 Score=90.48 Aligned_cols=228 Identities=13% Similarity=0.140 Sum_probs=134.2
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHc-CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHH
Q 008276 299 AISVASVLPACGDLSALLLGRKIHRYVERK-KLQP---NLRLENALVDMYAKCGSLTEARTVFDQMRC--QDVVSWTSMI 372 (571)
Q Consensus 299 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li 372 (571)
...|...|......++.+.|.++.++++.. ++.- -...|.++++.-..-|.-+...++|+++.+ .....|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 355666666666777777777777776642 2111 123455555555555666666677776665 2234566677
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 008276 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452 (571)
Q Consensus 373 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (571)
..|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.++.+.-.-.-........+.+-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 7777777777777777777664 344455666677777777777777777777665311111234445555666667777
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCchh-HHHHHHHHHhcCCHHHHHHHHHH
Q 008276 453 EEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA--PNQSGY-YVLLSNIYAKAGRWGDVKRVRKF 527 (571)
Q Consensus 453 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~ 527 (571)
+.+..+|+.. ..+.....|+.++..-.++|+.+.+..+|++++.+. |..... |..+...-...|+-+.+..+-.+
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 7777777765 222255667777777777777777777777777655 333333 33333322334554444444333
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=9e-07 Score=86.69 Aligned_cols=212 Identities=12% Similarity=0.000 Sum_probs=159.7
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCC
Q 008276 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQ 380 (571)
Q Consensus 303 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~ 380 (571)
..+...+...|-...|..+++.+. .+...+.+|+..|+..+|..+..+-.+ |+...|..+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 344455666677777777776544 345577788888888888777665543 677778888887777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008276 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK 460 (571)
Q Consensus 381 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (571)
+++|.++.+..... .-..+.....+.++++++.+.|+.-.+. .+....+|..+..+..+.++++.|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 78888877654332 1112222234468889999988887763 23455678888888889999999999998
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 461 QM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 461 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
.. ...| +...|+.+-.+|.+.++-.+|...++++.+-+-.+..+|....-...+.|.+++|.+.+.++.+..
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 77 6677 567899999999999999999999999999888888889888888899999999999999987543
No 112
>PLN02789 farnesyltranstransferase
Probab=98.70 E-value=1e-05 Score=75.50 Aligned_cols=177 Identities=12% Similarity=0.024 Sum_probs=110.6
Q ss_pred CHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHH
Q 008276 349 SLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQ--GYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYY 422 (571)
Q Consensus 349 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 422 (571)
++++++..++.+.+ .+...|+.....+.+.|+ .++++.+++++.+. .| |..+|....-++...|+++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34555555555443 233344444333344443 25667777777763 33 455777776677777778888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHH
Q 008276 423 FKIMTEQYKLVPRIEHFACLVDLLGRA---GK----VEEAYDLIKQM-PMEP-NERIWGSLVAACCLY----SNMDIGIL 489 (571)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~A~~ 489 (571)
++++.+. -+.+...|+....++.+. |+ .+++++...++ ...| +...|+.+...+... ++..+|..
T Consensus 165 ~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 165 CHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred HHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 8877764 233445555554444433 22 24556665444 5556 677888777777662 44567888
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcC------------------CHHHHHHHHHHHH
Q 008276 490 AADHIFHLAPNQSGYYVLLSNIYAKAG------------------RWGDVKRVRKFMN 529 (571)
Q Consensus 490 ~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 529 (571)
++.++...+|+++.+...|+..|.... ..++|..+++.+.
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 888888888888889999999988642 3467888888873
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.69 E-value=3.3e-06 Score=72.92 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=105.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 008276 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448 (571)
Q Consensus 369 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (571)
..+-..+...|+-+....+..+.... ...|.......+......|++..|...+.+... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44455566666666666666654432 222444455566667777777777777777765 556677777777777777
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 008276 449 AGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526 (571)
Q Consensus 449 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 526 (571)
.|++++|..-|.+. .+.| ++..++.+...+.-.||.+.|..++.......+.+..+-..++.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777777666 4444 455667777777777777777777777777777777777777777777777777776654
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.66 E-value=0.00044 Score=66.01 Aligned_cols=161 Identities=11% Similarity=0.120 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444 (571)
Q Consensus 366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (571)
.+|..++..-.+......|..+|.++.+.+..+ +...+++++..+|. ++.+-|.++|+.-.+.++ .++..-...+.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 356677777777777778888888888777666 45566667666554 667778888877666433 33344456677
Q ss_pred HHHhcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc----hhHHHHHHHHHhc
Q 008276 445 LLGRAGKVEEAYDLIKQM---PMEP--NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS----GYYVLLSNIYAKA 515 (571)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~ 515 (571)
-+...|+-..|..+|++. .+.| ....|..++.--..-|+...+.++-++.....|.+. ..-..+++-|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 777777777888888776 2233 345788888777778888888888777777666332 2344556666667
Q ss_pred CCHHHHHHHHHHHH
Q 008276 516 GRWGDVKRVRKFMN 529 (571)
Q Consensus 516 g~~~~A~~~~~~m~ 529 (571)
+.+..-..-++.|-
T Consensus 524 d~~~c~~~elk~l~ 537 (656)
T KOG1914|consen 524 DLYPCSLDELKFLG 537 (656)
T ss_pred ccccccHHHHHhhh
Confidence 77766666666653
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=4.8e-06 Score=85.69 Aligned_cols=160 Identities=11% Similarity=0.025 Sum_probs=112.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 008276 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL 442 (571)
Q Consensus 364 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 442 (571)
++..+..|.....+.|.+++|..+++...+ +.|+.. ....+...+.+.+++++|...+++... .-+.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 467777888888888888888888888888 566654 666677778888888888888888876 334455667777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHH
Q 008276 443 VDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD 520 (571)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 520 (571)
..++...|++++|.++|+++ ...| +..++..+..++...|+.++|...|+++++...+-...|..+. ++...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~ 234 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNA 234 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHH
Confidence 88888888888888888887 3344 4677778888888888888888888888887644444443332 22333
Q ss_pred HHHHHHHHHhCCC
Q 008276 521 VKRVRKFMNSKGI 533 (571)
Q Consensus 521 A~~~~~~m~~~~~ 533 (571)
-...++++.-.+.
T Consensus 235 ~~~~~~~~~~~~~ 247 (694)
T PRK15179 235 DLAALRRLGVEGD 247 (694)
T ss_pred HHHHHHHcCcccc
Confidence 3445555543333
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.64 E-value=4.6e-06 Score=72.35 Aligned_cols=157 Identities=10% Similarity=0.099 Sum_probs=118.2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHH
Q 008276 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420 (571)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 420 (571)
+..|...|+++.+....+.+..+. ..+...++.++++..++...+. -+.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 346777788777655543332221 0122366778888888888874 2446778999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 421 YYFKIMTEQYKLVPRIEHFACLVDLL-GRAGK--VEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIF 495 (571)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 495 (571)
..|++..+. .+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..|++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999873 345667788888864 67777 59999999988 5566 67788888889999999999999999999
Q ss_pred hhCCCCchhHHHH
Q 008276 496 HLAPNQSGYYVLL 508 (571)
Q Consensus 496 ~~~p~~~~~~~~l 508 (571)
+..|++..-+..+
T Consensus 172 ~l~~~~~~r~~~i 184 (198)
T PRK10370 172 DLNSPRVNRTQLV 184 (198)
T ss_pred hhCCCCccHHHHH
Confidence 9998776554433
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.64 E-value=1e-05 Score=84.93 Aligned_cols=199 Identities=12% Similarity=0.186 Sum_probs=118.5
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 008276 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRC--------QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403 (571)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 403 (571)
.+...|-..|......++.++|++++++... .-...|.+++......|.-+...++|+++.+. --....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 3344555566666666666666666666543 12234666666555566666666666666652 2223356
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHH
Q 008276 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN---ERIWGSLVAACC 479 (571)
Q Consensus 404 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~ 479 (571)
..|...|.+.+.+++|.++++.|.++++ .....|...+..+.+.++-+.|.+++.++ ..-|. .....-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 6666666666666677777776666444 44556666666666666666666666655 22232 222233333344
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008276 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534 (571)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 534 (571)
+.||.+++..+|+-.+...|.....|..+++.-.+.|+.+.++.+|++..+.++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 5666666666666666666666666666666666666666666776666666554
No 118
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.64 E-value=0.00086 Score=68.08 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008276 470 IWGSLVAACCLYSNMD---IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK 535 (571)
Q Consensus 470 ~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 535 (571)
+.+.|+..+.+.++.. +|+-+++.....+|.|..+-..++.+|.-.|-+..|.++++.+.-+.|..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 3456677777776655 77778888888888888888888888888899999998888876665553
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=2.3e-06 Score=83.95 Aligned_cols=189 Identities=18% Similarity=0.205 Sum_probs=160.7
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008276 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408 (571)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 408 (571)
+.+|-...-..+...+...|-...|..+|+++ ..|...|.+|+..|+..+|..+..+-.+ -+|++..|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34566666677888999999999999999885 4678888999999999999999998888 5789999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 008276 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDI 486 (571)
Q Consensus 409 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 486 (571)
......-+++|+++.+..... .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888899999998876542 1122333344579999999999865 6666 67789889989999999999
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 487 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
|.+.|.+...++|++...|+.+..+|.+.|+..+|...+++..+-+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999998766
No 120
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=5.5e-06 Score=79.25 Aligned_cols=251 Identities=12% Similarity=0.008 Sum_probs=178.1
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 008276 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350 (571)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (571)
..-+.+.|+..+|.-.|+..+... +-+...|..|.......++-..|+..+++..+.+ +.+......|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 345667888888888888877664 4456778788777888888888888888888776 55667777777788888887
Q ss_pred HHHHHHHhhCCCCC-hhHHHHHH---------HHHHhcCChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHhhcCCCHHHH
Q 008276 351 TEARTVFDQMRCQD-VVSWTSMI---------SAYGMSGQGYDAVALFSKM-LMSGLCPDSIAFVSVLSACSHAGLLEEG 419 (571)
Q Consensus 351 ~~a~~~~~~~~~~~-~~~~~~li---------~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~l~~~~~~~~~~~~a 419 (571)
..|...|+.-..-. ...|.... ..+..........++|-++ ...+..+|+.....|.-.|--.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 88887776542100 00000000 0111112233444444444 4455446777777777778889999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 008276 420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNE-RIWGSLVAACCLYSNMDIGILAADHIFHL 497 (571)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 497 (571)
...|+.+... -+-|..+||-|.-.++...+.++|+..|.++ .++|+. ..+-.|.-.|...|.+++|...|-.++.+
T Consensus 450 iDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999999852 2445678999999999999999999999988 888864 46667888899999999999999998876
Q ss_pred CCC----------CchhHHHHHHHHHhcCCHHHHHHHH
Q 008276 498 APN----------QSGYYVLLSNIYAKAGRWGDVKRVR 525 (571)
Q Consensus 498 ~p~----------~~~~~~~l~~~~~~~g~~~~A~~~~ 525 (571)
.+. +..+|..|=.++.-.++.|-+.++.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 532 1247888877888888877666543
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.57 E-value=7.2e-06 Score=70.84 Aligned_cols=135 Identities=16% Similarity=0.091 Sum_probs=114.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 008276 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--PMEPNERIWGS 473 (571)
Q Consensus 396 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 473 (571)
..|+......+-..+...|+-+....+...... ..+.+......++....+.|++..|...|++. .-.+|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 344333225566777788888888888887654 44556667777999999999999999999998 44558999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
+..+|.+.|+.+.|...|.+++++.|+++.++..++..|.-.|++++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999887554
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.56 E-value=9.2e-07 Score=71.01 Aligned_cols=97 Identities=10% Similarity=0.017 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276 436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513 (571)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 513 (571)
......+...+...|++++|.++|+-+ .+.| +...|-.|..++...|++++|+..|.++..++|+++..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 345566777888999999999999988 5667 67788888888999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 008276 514 KAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 514 ~~g~~~~A~~~~~~m~~~~ 532 (571)
..|+.+.|++.|+..+...
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999887654
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=1.5e-05 Score=75.05 Aligned_cols=116 Identities=19% Similarity=0.160 Sum_probs=68.6
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 008276 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-ERIWGSLVAACCLYSNMDIGI 488 (571)
Q Consensus 411 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~ 488 (571)
...|.+++|+..++.+.. ..+.|+..+....+.+...|+.++|.+.++++ ...|+ ...+-.+..++.+.|++++|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 345666666666666654 33444555555566666666666666666665 44454 444455556666666666666
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528 (571)
Q Consensus 489 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 528 (571)
..++.....+|+++..|..|+.+|...|+..+|.....++
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 6666666666666666666666666666655555544443
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.54 E-value=8.5e-06 Score=73.77 Aligned_cols=183 Identities=16% Similarity=0.051 Sum_probs=126.8
Q ss_pred CCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCC-C-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hh---H
Q 008276 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ-P-NLRLENALVDMYAKCGSLTEARTVFDQMRC--QD-VV---S 367 (571)
Q Consensus 296 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~---~ 367 (571)
......+......+...|+++.|...++.+.+.... | ....+..+..++...|++++|...++.+.+ |+ .. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345567778888899999999999999999876421 1 124667788899999999999999999864 32 22 4
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHH
Q 008276 368 WTSMISAYGMS--------GQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH 438 (571)
Q Consensus 368 ~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 438 (571)
+..+..++.+. |++++|.+.|+++.+. .|+.. .+..+.... . . ..... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~------~~~~~---------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---L------RNRLA---------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---H------HHHHH---------HH
Confidence 55556666654 7889999999999884 55543 222221110 0 0 00000 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 008276 439 FACLVDLLGRAGKVEEAYDLIKQM-PM---EP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499 (571)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 499 (571)
...+...+.+.|++++|...+++. .. .| ....+..+..++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 124667788899999999888877 22 23 356788888899999999999998888776655
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.53 E-value=0.001 Score=63.62 Aligned_cols=389 Identities=13% Similarity=0.113 Sum_probs=197.8
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHHcccCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 008276 61 HSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--K-NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL 137 (571)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 137 (571)
|-|..+|+.||+-+... ..+++++.++++.. | .+..|..-|..-.+..+++....+|.+....- .+...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 45788888888877766 78888888888765 3 55678888888888888888888888877653 3444454444
Q ss_pred HHhhc-CCCh----HHHHHHHHHHH-HhCCCCc-hhHHHHHHHH---------HHhCCCHHHHHHHHccCCC-C------
Q 008276 138 KACSG-SNSL----LVGLQIHCSVV-KVGLDYN-LFNGNGLVAM---------YGKCGCLKEARRVLNDMPS-K------ 194 (571)
Q Consensus 138 ~~~~~-~~~~----~~a~~~~~~~~-~~g~~~~-~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~-~------ 194 (571)
....+ .++. ....+.|+-.+ +.|.++- -..|+..+.. |....+++...++++++.. |
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 43322 1221 22223333332 3343332 2345544443 3445567777888887764 2
Q ss_pred ---CchhHHHHHHHH-------HhCCCchHHHHHHHHHHH--CCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhC---
Q 008276 195 ---DVVTWNSMVAGY-------AQNGRFDEALDVCREMES--LRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKL--- 259 (571)
Q Consensus 195 ---~~~~~~~li~~~-------~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~--- 259 (571)
|-..|..=|+.. -+...+-.|.++++++.. .|..-...+ .-..+..+--+..+++...
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHHHH
Confidence 222332222211 123345667777777653 232211111 0000000000011111000
Q ss_pred ---CC-------------------------CChhhHHHHHHHHHHcCC--------------chHHHHHHHHHHHCCCCC
Q 008276 260 ---DN-------------------------KNLVSWNVMIAVYANNSM--------------PAEAVDLYLQMEVHGIEP 297 (571)
Q Consensus 260 ---~~-------------------------~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~m~~~g~~~ 297 (571)
.+ -.+..|.--...+...++ .+++..+++.....-..-
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 00 011111111111122222 233333333333221122
Q ss_pred CHHHHHHHHHHh---ccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHH
Q 008276 298 NAISVASVLPAC---GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-----QDVVSWT 369 (571)
Q Consensus 298 ~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~ 369 (571)
+..+|..+..-- ......+....+++.++..-...-.-+|..++....+..-++.|..+|.++.+ .++..++
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 222232222211 11112444555555555432222234555666666667777777777777764 2556667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHH
Q 008276 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI--EHFACLVDLLG 447 (571)
Q Consensus 370 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 447 (571)
+++..||. ++..-|.++|+--.+. ..-++.--...+.-+...++-..+..+|++.... ++.++. .+|..++..-.
T Consensus 407 A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES 483 (656)
T KOG1914|consen 407 ALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYES 483 (656)
T ss_pred HHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHH
Confidence 77766663 5667777777764442 2222223334455566667777777777777765 555543 56777777777
Q ss_pred hcCCHHHHHHHHHhC
Q 008276 448 RAGKVEEAYDLIKQM 462 (571)
Q Consensus 448 ~~g~~~~A~~~~~~~ 462 (571)
.-|++..+.++-++.
T Consensus 484 ~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 484 NVGDLNSILKLEKRR 498 (656)
T ss_pred hcccHHHHHHHHHHH
Confidence 777777777776655
No 126
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=1.7e-07 Score=54.45 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=21.8
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHccC
Q 008276 160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191 (571)
Q Consensus 160 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 191 (571)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
No 127
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=1.5e-07 Score=54.67 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=26.8
Q ss_pred hcCCCChhHHHHHHHHhhcCCChHHHHHHHcccC
Q 008276 58 QHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91 (571)
Q Consensus 58 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 91 (571)
.|+.||..+|+.||.+|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888887764
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=2.8e-05 Score=67.21 Aligned_cols=150 Identities=9% Similarity=0.040 Sum_probs=103.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---
Q 008276 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR--- 448 (571)
Q Consensus 372 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 448 (571)
...|++.|++++|++...... +......=+..+.+..+.+.|.+.+++|.+- .+..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhc
Confidence 445778888888887776511 2222333344456777788888888888642 344555556555543
Q ss_pred -cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHH-HH
Q 008276 449 -AGKVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK-RV 524 (571)
Q Consensus 449 -~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~ 524 (571)
.+...+|.-+|+++ +..|++.+.+....++...|++++|..+++.++..+++++.+...++.+-...|+-.++. +.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 34677888888888 467788888888888888888888888888888888888888888877777777765544 45
Q ss_pred HHHHHhC
Q 008276 525 RKFMNSK 531 (571)
Q Consensus 525 ~~~m~~~ 531 (571)
+.+++..
T Consensus 265 l~QLk~~ 271 (299)
T KOG3081|consen 265 LSQLKLS 271 (299)
T ss_pred HHHHHhc
Confidence 5655543
No 129
>PLN02789 farnesyltranstransferase
Probab=98.50 E-value=0.00014 Score=68.04 Aligned_cols=236 Identities=12% Similarity=0.070 Sum_probs=160.2
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccCC-chHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 008276 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA-ISVASVLPACGDLS-ALLLGRKIHRYVERKKLQPNLRLENALVDM 343 (571)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 343 (571)
++..+-..+...++.++|+.+..++++. .|+. .+|..--.++...| +++++...++.+.+.+ +.+..+|+.....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3444555667788999999999999875 4544 45554444555566 5789999999999876 4455567655555
Q ss_pred HHhcCCH--HHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC---CC
Q 008276 344 YAKCGSL--TEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA---GL 415 (571)
Q Consensus 344 ~~~~~~~--~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---~~ 415 (571)
+.+.|+. +++..+++.+.+ .|...|+...-.+...|+++++++.+.++++.+.. |...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 5556653 667788877764 46778888888888999999999999999996543 455666655554443 22
Q ss_pred ----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---
Q 008276 416 ----LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA----GKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYS--- 482 (571)
Q Consensus 416 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--- 482 (571)
.++...+..++... .+-+...|+.+...+... ++..+|.+.+.+. ...| +......|+..|+...
T Consensus 195 ~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~ 272 (320)
T PLN02789 195 LEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPT 272 (320)
T ss_pred ccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccc
Confidence 24567777666653 344556777777777663 3456688888776 4445 5667788888887532
Q ss_pred ---------------CHHHHHHHHHHHHhhCCCCchhHHH
Q 008276 483 ---------------NMDIGILAADHIFHLAPNQSGYYVL 507 (571)
Q Consensus 483 ---------------~~~~A~~~~~~~~~~~p~~~~~~~~ 507 (571)
..++|..+++.+.+.+|--...|..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~ 312 (320)
T PLN02789 273 AEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAW 312 (320)
T ss_pred hhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 2366888888776666755545443
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=2.5e-05 Score=81.32 Aligned_cols=229 Identities=11% Similarity=0.096 Sum_probs=130.8
Q ss_pred CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHH-HHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 008276 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAIS-VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340 (571)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 340 (571)
.+...+..|+..+...+++++|.++.+...+. .|+... |..+...+.+.++...+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 45678889999999999999999999977664 454432 22222244444444433333 22
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHH
Q 008276 341 VDMYAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418 (571)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 418 (571)
+.......++..+..+...+.. .+...+..+..+|-+.|+.++|...|+++++.. +-|....+.+...++.. ++++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 2223333333222333333322 233355666677777777777777777777743 22455666666666666 7777
Q ss_pred HHHHHHHHHHhcCCC--CC--HHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008276 419 GRYYFKIMTEQYKLV--PR--IEHFACLVDLLGRAGKVEEAYDLIKQM----PMEPNERIWGSLVAACCLYSNMDIGILA 490 (571)
Q Consensus 419 a~~~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 490 (571)
|.+++.++...+-.. ++ ...|..++. ....+++.-..+.+++ +..--..++-.+-..|...+++++++.+
T Consensus 168 A~~m~~KAV~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 168 AITYLKKAIYRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 777766665431000 00 001111111 0111222222222222 2222334444555667788899999999
Q ss_pred HHHHHhhCCCCchhHHHHHHHHH
Q 008276 491 ADHIFHLAPNQSGYYVLLSNIYA 513 (571)
Q Consensus 491 ~~~~~~~~p~~~~~~~~l~~~~~ 513 (571)
++.+++.+|.|..+..-++.+|.
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHH
Confidence 99999999999999999999887
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.46 E-value=3e-06 Score=69.14 Aligned_cols=98 Identities=12% Similarity=0.106 Sum_probs=47.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 008276 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCL 480 (571)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 480 (571)
...+...+...|++++|.+.++.+... .+.+...+..+...+...|++++|...+++. ...| +...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 333444445555555555555555442 1233444445555555555555555555544 2223 33444444444555
Q ss_pred cCCHHHHHHHHHHHHhhCCCCc
Q 008276 481 YSNMDIGILAADHIFHLAPNQS 502 (571)
Q Consensus 481 ~g~~~~A~~~~~~~~~~~p~~~ 502 (571)
.|++++|+..++++.+.+|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGENP 119 (135)
T ss_pred cCCHHHHHHHHHHHHHhccccc
Confidence 5555555555555555555443
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=2.7e-05 Score=66.76 Aligned_cols=184 Identities=11% Similarity=0.112 Sum_probs=143.8
Q ss_pred hcCCHHHHHHHHhhCCC--------CChh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHhhcCCC
Q 008276 346 KCGSLTEARTVFDQMRC--------QDVV-SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV-LSACSHAGL 415 (571)
Q Consensus 346 ~~~~~~~a~~~~~~~~~--------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~~~ 415 (571)
...+.++..+++.++.. ++.. .|..++-+....|+.+-|...++.+... + |++.-...+ ..-+...|+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhc
Confidence 45678888888887752 3333 3566666778889999999999999885 4 555432222 223456799
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008276 416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADH 493 (571)
Q Consensus 416 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (571)
+++|.++++.+.++ -+.|..++.--+-+.-..|+.-+|++-+.+. .+-.|...|..+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 99999999999985 3556677777777777788887888777666 5566999999999999999999999999999
Q ss_pred HHhhCCCCchhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC
Q 008276 494 IFHLAPNQSGYYVLLSNIYAKAG---RWGDVKRVRKFMNSKGI 533 (571)
Q Consensus 494 ~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~ 533 (571)
++=..|-++..+..+++.+.-.| +++-|++++.+..+-..
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999999999999999887765 56678888988876654
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=0.0002 Score=67.69 Aligned_cols=136 Identities=19% Similarity=0.145 Sum_probs=94.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCC
Q 008276 374 AYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR-IEHFACLVDLLGRAGK 451 (571)
Q Consensus 374 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 451 (571)
.+...|.+++|+..++.++.. .| |+..+......+...++.++|.+.++++... .|+ ....-.+..+|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCC
Confidence 445677888888888887774 44 4445555566777888888888888888753 344 4556677788888888
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 452 VEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 452 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
+.+|..+++.. ..+.|+..|..|..+|...|+..++.... ++.|.-.|++++|...+....
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHHHH
Confidence 88888888776 33337778888888888888777665543 344566666666666666655
Q ss_pred hC
Q 008276 530 SK 531 (571)
Q Consensus 530 ~~ 531 (571)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 44
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.41 E-value=8.3e-06 Score=77.56 Aligned_cols=124 Identities=13% Similarity=0.145 Sum_probs=103.0
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 008276 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAAC 478 (571)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 478 (571)
.....++..+...++++.|..+++++.+. .|+. ...+++.+...++-.+|.+++++. ...| +...+..-...|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34455667777788999999999998865 3554 345788888888888999988887 3344 666677777778
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 479 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
...++++.|+.+.+++.+..|++..+|..|+.+|.+.|++++|+-.++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 899999999999999999999999999999999999999999999998876
No 135
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.38 E-value=0.00011 Score=75.82 Aligned_cols=142 Identities=10% Similarity=0.037 Sum_probs=115.1
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHH
Q 008276 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVS 405 (571)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ 405 (571)
...+...+..|.......|.+++|..+++.+.+ | +...+..++..+.+.+++++|+..+++... ..|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 456688888899999999999999999999875 5 455678888899999999999999999988 456544 6777
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 008276 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--PMEPNERIWGSLV 475 (571)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 475 (571)
+..++...|++++|..+|+++.. ..+.+...+..+..++...|+.++|...|++. ...|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 77888899999999999999986 33445678888999999999999999999987 3345555555444
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=9.7e-05 Score=63.50 Aligned_cols=202 Identities=13% Similarity=0.080 Sum_probs=151.1
Q ss_pred ccCCchHHHHHHHHHHHH---cC-CCCChh-HHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-hHHHHHHHHHHhcCCh
Q 008276 310 GDLSALLLGRKIHRYVER---KK-LQPNLR-LENALVDMYAKCGSLTEARTVFDQMRC--QDV-VSWTSMISAYGMSGQG 381 (571)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~ 381 (571)
....+.++..+++..+.. .| ..++.. .|..++-+....|+.+-|...++.+.. |.. ..-..-...+-..|.+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhch
Confidence 345578899999988874 34 445553 455666677888999999999988764 322 2222222234457899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 008276 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ 461 (571)
Q Consensus 382 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (571)
++|+++|+.+.+.+ +.|..++..=+...-..|+.-+|++-+....+ .+..|...|.-+.+.|...|++++|.--+++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 99999999999975 44666777766667777888899999998888 6788999999999999999999999999999
Q ss_pred C-CCCC-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 008276 462 M-PMEP-NERIWGSLVAACCL---YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514 (571)
Q Consensus 462 ~-~~~p-~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 514 (571)
+ -+.| ++..+..+...+.. ..+.+-|.+.|.+++++.|.+...+..+..+...
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 8 4456 66677777776554 3467789999999999999776666665444333
No 137
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00023 Score=61.70 Aligned_cols=155 Identities=13% Similarity=0.096 Sum_probs=85.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----CCCH
Q 008276 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH----AGLL 416 (571)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~ 416 (571)
...|+..|++++|.+...... +....-.=...+.+..+++-|...+++|.+ +. +..|.+.|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHHhccchhh
Confidence 345566666666666665522 222222223344555666667777777666 22 44455555555433 3456
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 008276 417 EEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNM-DIGILAADH 493 (571)
Q Consensus 417 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 493 (571)
..|.-+|+++.+ ...|+..+.+....+....|++++|..++++. ....++.+...++..-...|.. +-..+.+.+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 667777777765 45666666666666666777777777777666 2223455554444444444433 344455555
Q ss_pred HHhhCCCCc
Q 008276 494 IFHLAPNQS 502 (571)
Q Consensus 494 ~~~~~p~~~ 502 (571)
.....|.++
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 555556543
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.35 E-value=2e-05 Score=64.20 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276 435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512 (571)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 512 (571)
+......+...+...|++++|.+.++++ ...| +...|..+...+...|++++|...++++.+.+|+++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455667788888999999999999887 4445 6778888888888999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 008276 513 AKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~~~ 532 (571)
...|++++|...+++..+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 99999999999998887654
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.25 E-value=5.1e-05 Score=72.28 Aligned_cols=129 Identities=17% Similarity=0.114 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 008276 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414 (571)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 414 (571)
.....|+..+...++++.|.++|+++.+.++.....++..+...++..+|++++.+.... .+-+...+..-...|...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 344566777777889999999999998877777778888888889999999999998874 2335556666677788999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 008276 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP 466 (571)
Q Consensus 415 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 466 (571)
+++.|..+.+++.+. .+.+..+|..|+.+|...|+++.|+-.++.++..+
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999999863 34455799999999999999999999999885443
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.24 E-value=0.00044 Score=72.34 Aligned_cols=237 Identities=9% Similarity=0.028 Sum_probs=143.8
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHH-HHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 008276 93 KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC-VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGL 171 (571)
Q Consensus 93 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 171 (571)
.+...|..|+..+...+++++|.++.+...+. .|+...+-. +...+.+.++...+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 46678888999999999999999999977664 566554432 22244455554444433 22
Q ss_pred HHHHHhCCCHHHHHHHHccCCC--CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccH
Q 008276 172 VAMYGKCGCLKEARRVLNDMPS--KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249 (571)
Q Consensus 172 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 249 (571)
+.......++.-...+...+.. .+..++..+..+|-+.|+.++|..+++++.+.. |+
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~------------------- 148 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RD------------------- 148 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cc-------------------
Confidence 2223333333222333333322 233467788899999999999999999998754 33
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcC
Q 008276 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329 (571)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 329 (571)
|+.+.|.+...|... +.++|.+++.+.... +...+++..+..+|..+....
T Consensus 149 -------------n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~ 199 (906)
T PRK14720 149 -------------NPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN 199 (906)
T ss_pred -------------cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC
Confidence 566677777777777 888888887776643 444556777777777777654
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409 (571)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 409 (571)
+.+...+..+.+.....-... .-+.++-.+-..|...+++++++.+++.+.+.. +-|......++.+
T Consensus 200 -~~d~d~f~~i~~ki~~~~~~~-----------~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~ 266 (906)
T PRK14720 200 -SDDFDFFLRIERKVLGHREFT-----------RLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRF 266 (906)
T ss_pred -cccchHHHHHHHHHHhhhccc-----------hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHH
Confidence 233333333332222211111 223345555666777777888888888877742 2244456666665
Q ss_pred hh
Q 008276 410 CS 411 (571)
Q Consensus 410 ~~ 411 (571)
|.
T Consensus 267 y~ 268 (906)
T PRK14720 267 YK 268 (906)
T ss_pred HH
Confidence 54
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.24 E-value=5.4e-05 Score=62.33 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=68.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHH
Q 008276 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNE----RIWGSLVA 476 (571)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~ 476 (571)
|..++..+ ..++...+...++.+.+.++-.+ .......+...+...|++++|...|+.+ ...|+. .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444443 35666666666666665422211 1123334556666667777777766666 212332 23334555
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276 477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527 (571)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 527 (571)
.+...|++++|+..++.. ...+..+..+...+.+|.+.|++++|+..|+.
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566677777777776552 22234455666777777777777777777764
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.18 E-value=3.1e-06 Score=62.14 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=54.4
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 008276 449 AGKVEEAYDLIKQM-PMEP---NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV 524 (571)
Q Consensus 449 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 524 (571)
.|+++.|+.+++++ ...| +...+..+..++.+.|++++|+.++++ .+.+|.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777776 2222 344555577777788888888888887 666676667777778888888888888888
Q ss_pred HHH
Q 008276 525 RKF 527 (571)
Q Consensus 525 ~~~ 527 (571)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.15 E-value=4.3e-05 Score=60.65 Aligned_cols=92 Identities=13% Similarity=0.015 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHH
Q 008276 440 ACLVDLLGRAGKVEEAYDLIKQM-PMEPN----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ---SGYYVLLSNI 511 (571)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 511 (571)
..++..+.+.|++++|.+.|.++ ...|+ ...+..+..++.+.|+++.|...++.+....|++ +.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 34444444555555555555444 11221 2233344455555555555555555555554443 3345555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 008276 512 YAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~~ 531 (571)
+.+.|++++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555544
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=6.2e-06 Score=48.73 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCc
Q 008276 97 FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDC 130 (571)
Q Consensus 97 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 130 (571)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888873
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.10 E-value=4.7e-05 Score=57.39 Aligned_cols=93 Identities=18% Similarity=0.275 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276 439 FACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516 (571)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 516 (571)
+..+...+...|++++|...++++ ...| +...+..+...+...|++++|...++++.+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677778888888888888876 4444 44667777788888899999999999999988888888999999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 008276 517 RWGDVKRVRKFMNSK 531 (571)
Q Consensus 517 ~~~~A~~~~~~m~~~ 531 (571)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999998887654
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.08 E-value=0.00033 Score=57.70 Aligned_cols=124 Identities=16% Similarity=0.117 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH--HHHHHH
Q 008276 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPD---SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI--EHFACL 442 (571)
Q Consensus 368 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l 442 (571)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+... ...|+. .....+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 44444444 4778888888888888752 222 123444556677888999999999888875 322221 234456
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276 443 VDLLGRAGKVEEAYDLIKQMPME-PNERIWGSLVAACCLYSNMDIGILAADHI 494 (571)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (571)
...+...|++++|+..++..... .....+......+...|+.++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77888889999999888876322 24556667777888899999999888875
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.00023 Score=65.65 Aligned_cols=255 Identities=11% Similarity=0.002 Sum_probs=159.5
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 008276 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349 (571)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 349 (571)
....+.+..++..|+..+....+.. +-+..-|..-+..+...++++.+.--.+.-.+.. +-........-+++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHH
Confidence 3445677778888999988888764 2234444444444555556665554444333221 0011122222333333333
Q ss_pred HHHHHHHHhh---------------CCC-----CChhHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008276 350 LTEARTVFDQ---------------MRC-----QDVVSWTSM-ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408 (571)
Q Consensus 350 ~~~a~~~~~~---------------~~~-----~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 408 (571)
..+|.+.++. +.. |...+|..+ ..++...|++++|...--..++. .++. .+...++
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vr 209 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVR 209 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhc
Confidence 3344333321 111 222333333 23556788999998887776663 3222 2333333
Q ss_pred --HhhcCCCHHHHHHHHHHHHHhcCCCCCHHH-------------HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----C
Q 008276 409 --ACSHAGLLEEGRYYFKIMTEQYKLVPRIEH-------------FACLVDLLGRAGKVEEAYDLIKQM-PMEP-----N 467 (571)
Q Consensus 409 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~ 467 (571)
++-..++.+.+...|++... ..|+... +..-.+-..+.|++.+|.+.+.+. .+.| +
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred ccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 34557888999999988763 3454322 112233456789999999999877 4444 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
...|.....+..+.|+.++|+.--+.+.+++|....++..-+.++...++|++|.+.++...+..
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55666667777889999999999999999999999999999999999999999999998876543
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.07 E-value=0.00011 Score=58.16 Aligned_cols=105 Identities=12% Similarity=0.068 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 008276 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN----ERIWGSLV 475 (571)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 475 (571)
++..+...+...|++++|...|+.+...++-.+ ....+..+..++.+.|++++|...++++ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455566666777778888887777766422111 1345556777777888888888887776 22333 44566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 008276 476 AACCLYSNMDIGILAADHIFHLAPNQSGYYV 506 (571)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 506 (571)
.++...|+.++|...++++++..|++..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7777888888888888888888887765443
No 149
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.07 E-value=1.7e-05 Score=55.72 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC-CHHHHHHHHHHHHhC
Q 008276 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG-RWGDVKRVRKFMNSK 531 (571)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 531 (571)
+...|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46778889999999999999999999999999999999999999999999 799999999987653
No 150
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.04 E-value=0.011 Score=54.63 Aligned_cols=258 Identities=18% Similarity=0.170 Sum_probs=175.9
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 008276 274 YANNSMPAEAVDLYLQMEVHGIEPNA--ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351 (571)
Q Consensus 274 ~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (571)
-.-.|+++.|.+-|+.|.. .|.. .....+.-...+.|+.+.|.++-+..-... +.-.......+...+..|+++
T Consensus 130 al~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 130 ALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChH
Confidence 3456999999999999985 3332 223334444567889999988888777654 333466778889999999999
Q ss_pred HHHHHHhhCCC-----CChh--HHHHHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHH
Q 008276 352 EARTVFDQMRC-----QDVV--SWTSMISAYG---MSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGR 420 (571)
Q Consensus 352 ~a~~~~~~~~~-----~~~~--~~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~ 420 (571)
.|+++.+.-.. +++. .-..|+.+-. -.-+...|...-.+..+ +.||.. .-..-..++.+.|+..++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence 99999987653 4432 1222332211 12345666666666555 677765 3444567889999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM----PMEP-NERIWGSLVAACCLYSNMDIGILAADHIF 495 (571)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 495 (571)
.+++.+-+. .|.+.++. +..+.+.|+. +..-+++. ..+| +......+..+....|++..|..--+.+.
T Consensus 284 ~ilE~aWK~---ePHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 284 KILETAWKA---EPHPDIAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred hHHHHHHhc---CCChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 999999865 56665442 3333455553 22222222 3456 45566777788889999999999999888
Q ss_pred hhCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCCceE-EEECCEE
Q 008276 496 HLAPNQSGYYVLLSNIYAKA-GRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547 (571)
Q Consensus 496 ~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~-~~~~~~~ 547 (571)
...|. .++|..|+++-... |+-.++...+-+.... ..+|.|+ ..+.+..
T Consensus 357 r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW~adg~vse~ 407 (531)
T COG3898 357 REAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAWTADGVVSEA 407 (531)
T ss_pred hhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCcccccCccccc
Confidence 88884 66888888887655 9999999998887654 4678888 4444433
No 151
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=5.5e-05 Score=66.90 Aligned_cols=91 Identities=19% Similarity=0.228 Sum_probs=44.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCH
Q 008276 375 YGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRAGKV 452 (571)
Q Consensus 375 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 452 (571)
+.+.++|++|+..|.+.++ +.| |.+-|..-..+|++.|.++.|++-.+..+. +.|.. ..|..|..+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcH
Confidence 3444555555555555555 333 333444445555555555555555444442 22222 3455555555555555
Q ss_pred HHHHHHHHhC-CCCCCHHH
Q 008276 453 EEAYDLIKQM-PMEPNERI 470 (571)
Q Consensus 453 ~~A~~~~~~~-~~~p~~~~ 470 (571)
++|++.|++. .+.|+-.+
T Consensus 166 ~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHHHHhhhccCCCcHH
Confidence 5555555544 44553333
No 152
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.03 E-value=0.023 Score=58.20 Aligned_cols=159 Identities=9% Similarity=0.018 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276 368 WTSMISAYGMSGQGY---DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444 (571)
Q Consensus 368 ~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (571)
.+.|++.+-+.++.. +|+-+++.-... -+-|..+-..+++.|+..|-+..|.+.|+.+--+ .+..|...|. +..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHH
Confidence 566777777777655 344444444442 1224445566778888888888888888877554 5555543332 334
Q ss_pred HHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCCchhHHHHHHHHHhcCCH
Q 008276 445 LLGRAGKVEEAYDLIKQM-P-MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA----PNQSGYYVLLSNIYAKAGRW 518 (571)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~ 518 (571)
.+...|++..+...++.. . ..-+..--.-+|....+.|.+.+..++..--.++. .....+-......+...++.
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 455566777776666554 0 00011111112333345666665555444322222 11223344666677778888
Q ss_pred HHHHHHHHHHH
Q 008276 519 GDVKRVRKFMN 529 (571)
Q Consensus 519 ~~A~~~~~~m~ 529 (571)
+.-...++.|.
T Consensus 596 ~q~~~~~~~~~ 606 (932)
T KOG2053|consen 596 TQLLKLLESMK 606 (932)
T ss_pred HHHHHHHhccc
Confidence 88888887766
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=9.7e-05 Score=65.80 Aligned_cols=108 Identities=14% Similarity=0.064 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCchhHHH
Q 008276 433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCL---YSNMDIGILAADHIFHLAPNQSGYYVL 507 (571)
Q Consensus 433 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~ 507 (571)
+.|...|-.|..+|...|+++.|...|.+. .+.| ++..+..+..++.. .....++..+++++++++|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 567788999999999999999999999887 4444 66677777777654 234558999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceE
Q 008276 508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540 (571)
Q Consensus 508 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 540 (571)
|+..+...|++.+|...|+.|.+....-+|..+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 999999999999999999999988766666544
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.01 E-value=6.6e-05 Score=71.91 Aligned_cols=108 Identities=14% Similarity=0.074 Sum_probs=91.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 008276 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSN 483 (571)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 483 (571)
-...+...|+++.|+..|+++.+. .+.+...|..+..+|...|++++|+..++++ .+.| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345667889999999999999874 3456678888999999999999999999988 5566 67788888999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 008276 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515 (571)
Q Consensus 484 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 515 (571)
+++|+..|+++++++|+++.+...+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998887776654443
No 155
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=1.1e-05 Score=47.28 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 008276 96 VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP 128 (571)
Q Consensus 96 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 128 (571)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.00 E-value=2.2e-05 Score=54.36 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=49.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
+...+...|++++|+..|+++++..|.++.++..++.++...|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45667788999999999999999999999999999999999999999999998887543
No 157
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.99 E-value=1.3e-05 Score=47.33 Aligned_cols=33 Identities=30% Similarity=0.599 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 008276 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD 399 (571)
Q Consensus 367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 399 (571)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 158
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=1.3e-05 Score=46.96 Aligned_cols=33 Identities=33% Similarity=0.535 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 008276 197 VTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229 (571)
Q Consensus 197 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 229 (571)
.+|+.++.+|.+.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.97 E-value=0.00016 Score=69.23 Aligned_cols=101 Identities=11% Similarity=0.027 Sum_probs=81.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 008276 371 MISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449 (571)
Q Consensus 371 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (571)
....+...|++++|++.|+++++. .| +...|..+..++...|++++|+..++++.+. .+.+...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 345667889999999999999984 44 4567888888999999999999999999874 344567888899999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 008276 450 GKVEEAYDLIKQM-PMEPNERIWGSLV 475 (571)
Q Consensus 450 g~~~~A~~~~~~~-~~~p~~~~~~~l~ 475 (571)
|++++|...|++. .+.|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999987 6667554444443
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=3e-05 Score=68.48 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=91.8
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 008276 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-ERIWGSLVAACCLYSNMD 485 (571)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 485 (571)
.-+.+.++|.+|+..|.++++ -.+.|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 346678999999999999986 34556788888999999999999999988877 77774 568999999999999999
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHH
Q 008276 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519 (571)
Q Consensus 486 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 519 (571)
+|++.|+++++++|++......|-.+-.+.+...
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999977777765544444433
No 161
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.95 E-value=0.0013 Score=53.93 Aligned_cols=132 Identities=10% Similarity=0.037 Sum_probs=85.6
Q ss_pred CCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 008276 396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP---NERIW 471 (571)
Q Consensus 396 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 471 (571)
+.|+...-..|..++...|++.+|...|++...- -+..|......+.++....+++..|...++++ ...| ++...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4566666666777777777777777777776652 34556666667777777777777777777766 1112 23334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 472 GSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
..+.+.+...|++.+|+..|+.++...| ++......+..+.++|+.++|..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 4566677777777777777777777665 35555566666777777776665444443
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.95 E-value=0.00016 Score=61.55 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 008276 437 EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511 (571)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 511 (571)
..+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|+..++++++..|.+...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555566666666666666666655 22221 34566666677777777777777777777777777777777777
Q ss_pred HHhcCC--------------HHHHHHHHHHHHhC
Q 008276 512 YAKAGR--------------WGDVKRVRKFMNSK 531 (571)
Q Consensus 512 ~~~~g~--------------~~~A~~~~~~m~~~ 531 (571)
+...|+ +++|.+++++....
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 777665 45566666655543
No 163
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.95 E-value=0.019 Score=54.25 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=86.7
Q ss_pred HHHhhCCChHHHHHHHHHHHHhhcCCCC----hhHHHHHHHHhhcCCChHHHHHHHcccCCC-ChhhHHHHHHHH--HHc
Q 008276 36 DILDKYPDIKTLKKLHAQIIINQHLHSN----PSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFFNVLIRSY--VNN 108 (571)
Q Consensus 36 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~--~~~ 108 (571)
-.+.+.+++.++..+|.++-.+..-.|. ...-+.++++|.. ++.+.....+....+. ....|-.+..++ -+.
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 3466779999999999999733322222 2233577888875 4556655555555442 133466665544 577
Q ss_pred CChhHHHHHHHHHHhC--CCCCCc------------ccHHHHHHHhhcCCChHHHHHHHHHHHHhCCC----CchhHHHH
Q 008276 109 YLYYDALHVYKNMSVH--GFDPDC------------YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD----YNLFNGNG 170 (571)
Q Consensus 109 ~~~~~A~~~~~~m~~~--g~~p~~------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~ 170 (571)
+.+.+|++.+.....+ +..|.- ..=+..+.++...|++.++..+++++...=++ .+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8899999998887665 222211 11134555667778888888777777654333 56677776
Q ss_pred HHHHHHh
Q 008276 171 LVAMYGK 177 (571)
Q Consensus 171 l~~~~~~ 177 (571)
++-.+++
T Consensus 173 ~vlmlsr 179 (549)
T PF07079_consen 173 AVLMLSR 179 (549)
T ss_pred HHHHHhH
Confidence 5555543
No 164
>PRK15331 chaperone protein SicA; Provisional
Probab=97.94 E-value=0.00014 Score=58.93 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276 439 FACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516 (571)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 516 (571)
......-+...|++++|..+|.-+ -..| +...|..|..++...+++++|+..|..+..++++|+..+...+.+|...|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 334555667899999999999877 3344 66678888888888999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 008276 517 RWGDVKRVRKFMNS 530 (571)
Q Consensus 517 ~~~~A~~~~~~m~~ 530 (571)
+.+.|+..|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988876
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.89 E-value=0.00054 Score=58.33 Aligned_cols=131 Identities=15% Similarity=0.130 Sum_probs=82.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 008276 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD--SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441 (571)
Q Consensus 364 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 441 (571)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 334566677777778888888888887776432222 246666777777788888888888777653 2234455566
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 008276 442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517 (571)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 517 (571)
+..++...|+...+..-++.. ...+++|.+.++++...+|++ +..+..-+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666676666655554332221 122677888888888888876 4444444444443
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.88 E-value=0.00075 Score=67.63 Aligned_cols=139 Identities=19% Similarity=0.064 Sum_probs=89.7
Q ss_pred CChhHHHHHHHHHHh--c---CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcC--------CCHHHHHHHHHHHHH
Q 008276 363 QDVVSWTSMISAYGM--S---GQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHA--------GLLEEGRYYFKIMTE 428 (571)
Q Consensus 363 ~~~~~~~~li~~~~~--~---~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~--------~~~~~a~~~~~~~~~ 428 (571)
.|...|...+++... . ++.+.|..+|++..+ ..|+.. .|..+..++... .++..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 466677777766433 2 236688899999888 567653 444433332211 122333444443332
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 008276 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503 (571)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 503 (571)
......+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...++++..++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 2123344566776766666778888888888877 66677778888888888888888888888888888887764
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.88 E-value=0.0007 Score=62.52 Aligned_cols=135 Identities=13% Similarity=0.164 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA-CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444 (571)
Q Consensus 366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (571)
.+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888999999999998642 2344455544444 33357777899999999884 5567788888999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 008276 445 LLGRAGKVEEAYDLIKQM-PMEPNE----RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503 (571)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 503 (571)
.+.+.|+.+.|..+|++. ..-|.. ..|...+..-.+.|+.+....+.+++.+..|.+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999987 323333 48999999999999999999999999998877443
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.86 E-value=0.00023 Score=60.45 Aligned_cols=94 Identities=9% Similarity=-0.116 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 008276 435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509 (571)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 509 (571)
....+..++..+...|++++|+..|++. ...|+ ..+|..+...+...|++++|+..++++.++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3456677777788888888888888877 33332 347788888889999999999999999999998888888888
Q ss_pred HHHH-------hcCCHHHHHHHHHHH
Q 008276 510 NIYA-------KAGRWGDVKRVRKFM 528 (571)
Q Consensus 510 ~~~~-------~~g~~~~A~~~~~~m 528 (571)
.++. ..|++++|+..+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 778888666555543
No 169
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.81 E-value=7.8e-05 Score=51.52 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 008276 442 LVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS 502 (571)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 502 (571)
+...+...|++++|.+.|+++ ...| +...+..+..++...|++++|...|+++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 567788899999999999988 5556 567888888889999999999999999999999874
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.81 E-value=4.4e-05 Score=53.37 Aligned_cols=54 Identities=15% Similarity=0.271 Sum_probs=44.7
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 479 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
...|++++|+..|+++.+.+|++..++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 457888888888888888888888888888888888899999988888776554
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.77 E-value=9.8e-05 Score=54.12 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008276 379 GQGYDAVALFSKMLMSGLC-PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457 (571)
Q Consensus 379 ~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 457 (571)
|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++..... +.+......+..++.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~---~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLD---PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHH---HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455555555555542210 12223333445555555555555555441110 0112222233445555555555555
Q ss_pred HHH
Q 008276 458 LIK 460 (571)
Q Consensus 458 ~~~ 460 (571)
+++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.75 E-value=0.00043 Score=51.96 Aligned_cols=92 Identities=18% Similarity=0.223 Sum_probs=44.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 008276 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSN 483 (571)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 483 (571)
+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 333444445555555555554432 1222234444555555555555555555544 2222 22345555555555666
Q ss_pred HHHHHHHHHHHHhhCC
Q 008276 484 MDIGILAADHIFHLAP 499 (571)
Q Consensus 484 ~~~A~~~~~~~~~~~p 499 (571)
++.|...++++.+..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 6666666665555444
No 173
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.74 E-value=0.011 Score=58.15 Aligned_cols=86 Identities=10% Similarity=0.067 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH----------
Q 008276 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNER---------- 469 (571)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---------- 469 (571)
.+...+...+-+...+..|.++|.+|-. ...++......++|++|..+-++. ...|+..
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 3444444445555566666666666632 123556666667777777666666 3333321
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 470 -IWGSLVAACCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 470 -~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (571)
-|...-.+|.+.|+-.+|.++++++..
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 112223456667788888888887654
No 174
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.72 E-value=0.00015 Score=51.54 Aligned_cols=57 Identities=7% Similarity=0.107 Sum_probs=50.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 476 AACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
..|.+.+++++|++.++++++.+|+++..+...+.++.+.|++++|.+.+++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788999999999999999999999999999999999999999999999888665
No 175
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.71 E-value=0.046 Score=51.60 Aligned_cols=428 Identities=9% Similarity=0.038 Sum_probs=232.6
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 008276 49 KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN---VVFFNVLIRSYVNNYLYYDALHVYKNMSVHG 125 (571)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 125 (571)
++-+++. .-|-|..+|-.|++-|...|..++.+++++++..|- ...|..-+++-....+++....+|.+.....
T Consensus 30 rLRerIk---dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIK---DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhh---cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 5555553 335688999999999999999999999999999874 3478888888888889999999999988764
Q ss_pred CCCCcccHHHHHHHhhcCCCh------HHHHHHHHHHHH-hCCCCc-hhHHHHHHHHH---------HhCCCHHHHHHHH
Q 008276 126 FDPDCYTYPCVLKACSGSNSL------LVGLQIHCSVVK-VGLDYN-LFNGNGLVAMY---------GKCGCLKEARRVL 188 (571)
Q Consensus 126 ~~p~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~-~g~~~~-~~~~~~l~~~~---------~~~g~~~~A~~~~ 188 (571)
+. ...|..-+....+.... ...-+.++-.+. .++.|- ...|+..+..+ -.+.++|.....+
T Consensus 107 l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 LN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred cc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 44 44454444433332211 111223333332 344443 33444444322 2234455566666
Q ss_pred ccCCC-C---------CchhHHHHHHHHHh---CC----CchHHHHHHHHHHH--CCCC----CCHHHHHHHHHHhcCCC
Q 008276 189 NDMPS-K---------DVVTWNSMVAGYAQ---NG----RFDEALDVCREMES--LRIK----PDADTMASLLPSVTNTS 245 (571)
Q Consensus 189 ~~~~~-~---------~~~~~~~li~~~~~---~g----~~~~a~~~~~~m~~--~g~~----p~~~t~~~ll~~~~~~~ 245 (571)
.++.. | |-..|..=++-... -| -+-.|...+++... .|.. .+.+|++.+-+ .+...
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r-~s~S~ 263 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR-TSDSN 263 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc-cccch
Confidence 66654 2 11222221111110 11 13445555655543 2322 12233322111 00000
Q ss_pred -----------------CccHHHHHHHHhhCC---CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 008276 246 -----------------PENVLSVKEMFLKLD---NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305 (571)
Q Consensus 246 -----------------~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 305 (571)
+.-.....-+++++. .-....|----..+...++-++|+.....-.. ..|. .+..
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sps---L~~~ 338 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPS---LTMF 338 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCc---hhee
Confidence 000000000111110 00111222222233444555555555433221 1222 2222
Q ss_pred HH-HhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh---------cCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 008276 306 LP-ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK---------CGSLTEARTVFDQMRCQDVVSWTSMISAY 375 (571)
Q Consensus 306 l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 375 (571)
+. .+.-..+-+.+...|+...+. |..-|.+ .|+++.-.+++-.-...=...|...+..-
T Consensus 339 lse~yel~nd~e~v~~~fdk~~q~-----------L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v 407 (660)
T COG5107 339 LSEYYELVNDEEAVYGCFDKCTQD-----------LKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYV 407 (660)
T ss_pred HHHHHhhcccHHHHhhhHHHHHHH-----------HHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHH
Confidence 22 222223333333333222210 1111100 12222221211111112345678888888
Q ss_pred HhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008276 376 GMSGQGYDAVALFSKMLMSG-LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454 (571)
Q Consensus 376 ~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (571)
.+....+.|..+|-++.+.| +.++...+++++..++ .|+...|.++|+.-... ++.+...-+..+.-+.+.++-+.
T Consensus 408 ~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~n 484 (660)
T COG5107 408 LRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEEN 484 (660)
T ss_pred HHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHH
Confidence 88888999999999999988 5667778888888765 47889999999887663 33333444566777888999999
Q ss_pred HHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276 455 AYDLIKQM--PMEPN--ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501 (571)
Q Consensus 455 A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 501 (571)
|..+|+.. .+..+ ...|..+|..-...|+...+..+-+++.+.-|..
T Consensus 485 araLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 485 ARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 99999965 22223 5688899998889999999999999999988753
No 176
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.67 E-value=0.06 Score=53.67 Aligned_cols=59 Identities=10% Similarity=0.040 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 008276 368 WTSMISAYGMSGQGYDAVALFSKMLM-SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426 (571)
Q Consensus 368 ~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 426 (571)
|..|.+-....|..+.|+..--.+.+ ..+-|....|..+.-+-+....+-..-+.|-++
T Consensus 1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 44444555566777777665444333 125556666766655555544444444444444
No 177
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.65 E-value=0.00061 Score=65.40 Aligned_cols=121 Identities=9% Similarity=-0.009 Sum_probs=97.1
Q ss_pred hcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC-C-----ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcc
Q 008276 58 QHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN-K-----NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCY 131 (571)
Q Consensus 58 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 131 (571)
.+.+.++.....+++.+....+++.+..++-+... | -..|.+++++.|.+.|..+.++.++..=...|+-||.+
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 34556777778888888888888888888766654 1 23456789999999999999999999999999999999
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 008276 132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC 178 (571)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 178 (571)
+++.||+.+.+.|++..|.++..+|..++...+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999988887666667766666666555
No 178
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.63 E-value=7.3e-05 Score=42.55 Aligned_cols=29 Identities=31% Similarity=0.528 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 008276 97 FFNVLIRSYVNNYLYYDALHVYKNMSVHG 125 (571)
Q Consensus 97 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g 125 (571)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
No 179
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.62 E-value=0.0042 Score=50.31 Aligned_cols=94 Identities=9% Similarity=-0.035 Sum_probs=61.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 008276 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCL 480 (571)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 480 (571)
...+..-+...|++++|.++|+.+..- -+-+...|..|.-++-..|++++|+..|... .+.| ++..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 333444556677777777777776642 2334455666777777777777777777766 3344 55666667777777
Q ss_pred cCCHHHHHHHHHHHHhhC
Q 008276 481 YSNMDIGILAADHIFHLA 498 (571)
Q Consensus 481 ~g~~~~A~~~~~~~~~~~ 498 (571)
.|+.+.|.+.|+.++..-
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 777777777777777655
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.60 E-value=0.0013 Score=51.20 Aligned_cols=87 Identities=16% Similarity=0.101 Sum_probs=53.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHH
Q 008276 442 LVDLLGRAGKVEEAYDLIKQM---PMEPN--ERIWGSLVAACCLYSNMDIGILAADHIFHLAPN---QSGYYVLLSNIYA 513 (571)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 513 (571)
+..++-..|+.++|+.+|++. +.... ...+-.+..++...|++++|+.++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445555666666666666655 22221 234555666666777777777777777766665 5555566666777
Q ss_pred hcCCHHHHHHHHHHH
Q 008276 514 KAGRWGDVKRVRKFM 528 (571)
Q Consensus 514 ~~g~~~~A~~~~~~m 528 (571)
..|+.++|++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777777665443
No 181
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.60 E-value=0.00084 Score=50.18 Aligned_cols=81 Identities=21% Similarity=0.089 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCcccHHHHHHHhhcCC--------ChHHHHHHHHHHHHhCCCCchhH
Q 008276 97 FFNVLIRSYVNNYLYYDALHVYKNMSVHGF-DPDCYTYPCVLKACSGSN--------SLLVGLQIHCSVVKVGLDYNLFN 167 (571)
Q Consensus 97 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 167 (571)
+....|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. ..-..+.++.+|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777777999999999999999999 999999999999877543 23456788999999999999999
Q ss_pred HHHHHHHHHh
Q 008276 168 GNGLVAMYGK 177 (571)
Q Consensus 168 ~~~l~~~~~~ 177 (571)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887764
No 182
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.58 E-value=8.6e-05 Score=42.24 Aligned_cols=31 Identities=48% Similarity=0.852 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 008276 197 VTWNSMVAGYAQNGRFDEALDVCREMESLRI 227 (571)
Q Consensus 197 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 227 (571)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.57 E-value=0.024 Score=52.70 Aligned_cols=162 Identities=15% Similarity=0.252 Sum_probs=90.9
Q ss_pred HHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhC-CCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcCCCCcc
Q 008276 171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQN-GRFDEALDVCREMESLRIKP-DADTMASLLPSVTNTSPEN 248 (571)
Q Consensus 171 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~ 248 (571)
.+..|...|++..|-+++ ..+...|-.. |++++|++.|++..+.-... ....
T Consensus 100 A~~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~--------------- 153 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS--------------- 153 (282)
T ss_dssp HHHHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH---------------
T ss_pred HHHHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh---------------
Confidence 355677778877776654 4455666666 78888888887765410000 0000
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHhccCCchHHHHHHH
Q 008276 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE-----PNAI-SVASVLPACGDLSALLLGRKIH 322 (571)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-----~~~~-~~~~ll~~~~~~~~~~~a~~~~ 322 (571)
-...+..+...+.+.|++++|.++|++....... .+.. .|...+-++...||...|...+
T Consensus 154 --------------a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~ 219 (282)
T PF14938_consen 154 --------------AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKAL 219 (282)
T ss_dssp --------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0234556677888888999999999888764322 1221 2223333556678888888888
Q ss_pred HHHHHcC--CCCC--hhHHHHHHHHHHh--cCCHHHHHHHHhhCCCCChhHHHHHH
Q 008276 323 RYVERKK--LQPN--LRLENALVDMYAK--CGSLTEARTVFDQMRCQDVVSWTSMI 372 (571)
Q Consensus 323 ~~~~~~~--~~~~--~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~li 372 (571)
+...... +..+ ......|+.++-. ...++.+..-|+.+.+-|..--..|+
T Consensus 220 ~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 220 ERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLL 275 (282)
T ss_dssp HHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHH
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHH
Confidence 8776542 2222 3445566666654 34577777777777776655444443
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.56 E-value=9.5e-05 Score=51.64 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=26.9
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 008276 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN 467 (571)
Q Consensus 412 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 467 (571)
..|++++|.++|+.+... .+.+...+..++.+|.+.|++++|.++++++ ...|+
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 345555555555555542 2224444445555555555555555555555 33444
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.53 E-value=0.0056 Score=61.48 Aligned_cols=134 Identities=15% Similarity=0.078 Sum_probs=97.4
Q ss_pred CCCCCHHHHHHHHHHhhc--C---CCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhc--------CCHHHHHHHHH
Q 008276 395 GLCPDSIAFVSVLSACSH--A---GLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRA--------GKVEEAYDLIK 460 (571)
Q Consensus 395 g~~p~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------g~~~~A~~~~~ 460 (571)
+.+.|...|...+++... . ++...|..+|+++.+. .|+. ..+..+..++... .+++.+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 356677888888887543 2 3377899999999864 5553 4555444444322 12344555555
Q ss_pred hC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 461 QM---P-MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 461 ~~---~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
+. . ...++..|..+.-.....|++++|...++++++++| +...|..++.++...|+.++|.+.+++...-+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 43 1 233567787777777778999999999999999999 57899999999999999999999999876554
No 186
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.53 E-value=0.0016 Score=48.68 Aligned_cols=81 Identities=20% Similarity=0.108 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHHCCC-CCCHHHHHHHHHHhccCC--------chHHHHHHHHHHHHcCCCCChhH
Q 008276 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGI-EPNAISVASVLPACGDLS--------ALLLGRKIHRYVERKKLQPNLRL 336 (571)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 336 (571)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..++. +.-....+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344567777778999999999999999999 999999999999876543 24456778899999999999999
Q ss_pred HHHHHHHHHh
Q 008276 337 ENALVDMYAK 346 (571)
Q Consensus 337 ~~~l~~~~~~ 346 (571)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887764
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.51 E-value=0.00023 Score=49.84 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 008276 435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYS-NMDIGILAADHIFHLAP 499 (571)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 499 (571)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3556777888888888888888888877 4455 5667777888888888 68888888888888877
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.50 E-value=0.068 Score=48.13 Aligned_cols=68 Identities=7% Similarity=-0.160 Sum_probs=45.7
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHhccCCchHHHHHHHHHHHHcCC
Q 008276 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA--ISVASVLPACGDLSALLLGRKIHRYVERKKL 330 (571)
Q Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 330 (571)
+...+-.....+...|++++|.+.|+++...-..+.. ...-.+..++.+.++++.|...++...+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 3444445566677788999999999998875322211 1123455677888888888888888887643
No 189
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.50 E-value=0.0022 Score=54.33 Aligned_cols=62 Identities=11% Similarity=0.052 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD--SIAFVSVLSACSHAGLLEEGRYYFKIMTE 428 (571)
Q Consensus 367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 428 (571)
.|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555556666665555554321111 12445555555555555555555555543
No 190
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.50 E-value=0.0016 Score=55.21 Aligned_cols=112 Identities=20% Similarity=0.251 Sum_probs=80.5
Q ss_pred HHHccC--CCCCchhHHHHHHHHHh-----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhh
Q 008276 186 RVLNDM--PSKDVVTWNSMVAGYAQ-----NGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLK 258 (571)
Q Consensus 186 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~ 258 (571)
..|+.. ..++..+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.||..+=+..-..-..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~------- 107 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNF------- 107 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccH-------
Confidence 344444 34677777777777765 4677778888899999999999999999998876543311111
Q ss_pred CCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc
Q 008276 259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA 314 (571)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 314 (571)
+.++-..| -.+-+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 108 --------fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 --------FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred --------HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111111 13567899999999999999999999999999988765
No 191
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.0014 Score=60.59 Aligned_cols=129 Identities=9% Similarity=0.114 Sum_probs=100.0
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 008276 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR-AGKVEEAYDLIKQM--PMEPNERIWGSLVAA 477 (571)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 477 (571)
.+|..+++..-+.+..+.|..+|.++.+. -..+..+|...+..-.. .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 36778888888888899999999999854 22344555555555344 56667799999987 445578889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 478 CCLYSNMDIGILAADHIFHLAPNQS---GYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 478 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
+...++.+.|..+|++++..-|... ..|...+..-.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766544 58999999999999999999999888754
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.48 E-value=0.0014 Score=60.61 Aligned_cols=258 Identities=13% Similarity=0.017 Sum_probs=152.9
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHhccCCchHHHHHHHHHHH--H--cCCCC-ChhHHHHHHH
Q 008276 272 AVYANNSMPAEAVDLYLQMEVHGIEPNA----ISVASVLPACGDLSALLLGRKIHRYVE--R--KKLQP-NLRLENALVD 342 (571)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~~-~~~~~~~l~~ 342 (571)
.-+|+.|+......+|+..++.| .-|. ..|..+.++|.-.+++++|.++...=+ . .|-+. .......|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 45788999999999999998877 3343 456666777888888998888754311 1 11110 1111112333
Q ss_pred HHHhcCCHHHHHHHHhhCCC---------CChhHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH-
Q 008276 343 MYAKCGSLTEARTVFDQMRC---------QDVVSWTSMISAYGMSGQ--------------------GYDAVALFSKML- 392 (571)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~- 392 (571)
.+--.|.+++|...-.+-.. .....+-.+...|...|+ ++.|.++|.+=+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 33344555555443222110 112233344444443331 234455554322
Q ss_pred ---HCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHH---HhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 008276 393 ---MSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMT---EQYKLVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM-- 462 (571)
Q Consensus 393 ---~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 462 (571)
+.|-.. --..|..|...|.-.|+++.|+...+.-. +.+|-.. ....+..+..++.-.|+++.|.+.++..
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 212111 11245556666666789999887765422 2223322 2356788888999999999999988754
Q ss_pred -----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----C--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 463 -----PME-PNERIWGSLVAACCLYSNMDIGILAADHIFHL----A--PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 463 -----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
+.+ ......-+|..+|.-..++++|+....+=+.+ + -....++.+|+.++...|..+.|+.+.+.-++
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 211 23344456788888888899999888765442 2 23455788999999999999999987766553
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.48 E-value=0.016 Score=52.21 Aligned_cols=171 Identities=13% Similarity=0.076 Sum_probs=97.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--CChh-H---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhh
Q 008276 340 LVDMYAKCGSLTEARTVFDQMRC--QDVV-S---WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS--IAFVSVLSACS 411 (571)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~--~~~~-~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~ 411 (571)
....+...|++++|.+.|+.+.. |+.. . .-.++.++.+.+++++|...+++..+. .|+. .-|...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 34445566777777777777764 3222 1 234556667777777777777777763 3322 12333333322
Q ss_pred c--C---------------CC---HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 008276 412 H--A---------------GL---LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIW 471 (571)
Q Consensus 412 ~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 471 (571)
. . .+ ...|...|+.+.+.+ |+. .-..+|...+..+....-.. -
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~la~~-e 178 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRLAKY-E 178 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHHHHH-H
Confidence 1 1 01 123444444444431 221 11222322222220000000 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 472 GSLVAACCLYSNMDIGILAADHIFHLAPNQS---GYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
..+..-|.+.|++.-|..-++.+++.-|+.+ .+...++.+|.+.|..++|..+...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1345568889999999999999999887654 467788899999999999999887664
No 194
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.18 Score=51.03 Aligned_cols=110 Identities=14% Similarity=0.086 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008276 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480 (571)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 480 (571)
.+.+-.+.-+...|+..+|.++-.+.+ .||...|-.-+.+++..+++++-+++-+... .+.-|.-+..+|.+
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLK 756 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHh
Confidence 345555666677788888888766653 4788888888889999999998888877762 25567778889999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 008276 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526 (571)
Q Consensus 481 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 526 (571)
.|+.++|.+.+-+...+. -...+|.+.|++.+|.+..-
T Consensus 757 ~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHH
Confidence 999999988776553221 56678888888888887643
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.42 E-value=0.021 Score=47.09 Aligned_cols=134 Identities=10% Similarity=0.036 Sum_probs=88.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 008276 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL 442 (571)
Q Consensus 363 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 442 (571)
|.+...-.|..++...|++.+|...|++...--..-|......+.++....+++..|...++.+.+.+.-.-++.....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 45555566777778888888888888887664444566677777778778888888888888877653222233444567
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 443 VDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (571)
.+.|...|+.++|+..|+.. ..-|+...-.-....+.+.|+.+++..-+..+.+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 77788888888888888776 4455555444444555666766665554444433
No 196
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.40 E-value=0.00016 Score=41.93 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=30.5
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhcCCHHHHH
Q 008276 491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK 522 (571)
Q Consensus 491 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 522 (571)
|+++++++|+++.+|..++.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999996
No 197
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.40 E-value=0.002 Score=59.54 Aligned_cols=129 Identities=12% Similarity=0.028 Sum_probs=87.6
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHH----cCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CC--Ch
Q 008276 300 ISVASVLPACGDLSALLLGRKIHRYVER----KKLQ-PNLRLENALVDMYAKCGSLTEARTVFDQMR-------CQ--DV 365 (571)
Q Consensus 300 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~--~~ 365 (571)
..|..+.+.|.-.|+++.|+...+.-+. .|-. .....+..+..++.-.|+++.|.+.|+... .. ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4566666777778899999887765442 2321 123456677788888899999988887543 12 23
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276 366 VSWTSMISAYGMSGQGYDAVALFSKMLM----SG-LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428 (571)
Q Consensus 366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 428 (571)
.+.-+|...|.-..++++|+.++.+-+. .+ ..-....+.+|..++...|..++|+.+.+...+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3456677788878888999888765332 11 122345778889999999999999887776554
No 198
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.39 E-value=0.0038 Score=60.07 Aligned_cols=117 Identities=11% Similarity=0.068 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHhccCCchHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHH
Q 008276 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERK--KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC----QDVVSWT 369 (571)
Q Consensus 296 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 369 (571)
+.+......+++.+....+.+.+..++...... ....-..+..++++.|.+.|..+.+..+++.=.. ||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555555566666666666666655555543 1222233444666666666666666666655443 5666666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 008276 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412 (571)
Q Consensus 370 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 412 (571)
.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666666655555555555544444443
No 199
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.38 E-value=0.065 Score=50.68 Aligned_cols=160 Identities=17% Similarity=0.133 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008276 339 ALVDMYAKCGSLTEARTVFDQMRCQ-------DVVSWTSMISAYGM---SGQGYDAVALFSKMLMSGLCPDSIAFVSVLS 408 (571)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 408 (571)
.++-.|....+++...++.+.+... ....-...+-++.+ .|+.++|+.++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444455666666666666665542 11112233344555 6777777777777555555666667766665
Q ss_pred Hhhc---------CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HH---HHHHHH---HhC-------CCC
Q 008276 409 ACSH---------AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK-VE---EAYDLI---KQM-------PME 465 (571)
Q Consensus 409 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~-------~~~ 465 (571)
.|-. ....++|...|.+.-+ +.|+...--.++..+...|. ++ +..++- ..+ .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5421 1235666766665543 34554333333333333442 11 222222 111 112
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276 466 PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501 (571)
Q Consensus 466 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 501 (571)
.+.-.+.+++.++.-.|++++|.+.++++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 344455778888899999999999999999988764
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.37 E-value=0.0019 Score=58.55 Aligned_cols=101 Identities=9% Similarity=0.021 Sum_probs=54.8
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC----CHHHHHHHH
Q 008276 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR-IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP----NERIWGSLV 475 (571)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~ 475 (571)
.|...+....+.|++++|...|+.+.+.+.-.+- ...+..+..+|...|++++|...|+.+ ...| ....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444443334556677777777766654322110 234455666666666666666666665 1112 233444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 008276 476 AACCLYSNMDIGILAADHIFHLAPNQS 502 (571)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 502 (571)
..+...|+.++|...|+++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 555566666666666666666666544
No 201
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.33 E-value=0.0054 Score=56.96 Aligned_cols=94 Identities=10% Similarity=0.100 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHhC------CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------
Q 008276 438 HFACLVDLLGRA-GKVEEAYDLIKQM------PMEP--NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ------- 501 (571)
Q Consensus 438 ~~~~l~~~~~~~-g~~~~A~~~~~~~------~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------- 501 (571)
.+..+...|... |++++|++.|++. .-.+ -..++..+...+.+.|++++|...|+++......+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344445555555 5666666666554 1111 12344455556666777777777777665532111
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
...+...+-++...|+...|.+.+++....
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 112334444556667777777777766543
No 202
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.27 E-value=0.00062 Score=42.39 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 008276 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSN 510 (571)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 510 (571)
.+|..+..+|...|++++|++.|+++++..|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788999999999999999999999999999999988864
No 203
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.27 E-value=0.0016 Score=62.08 Aligned_cols=97 Identities=12% Similarity=0.026 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 008276 435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNE----RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509 (571)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 509 (571)
+...++.+..+|...|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 3456666777777777777777777664 555643 24666677777777777777777777765321 121111
Q ss_pred H--HHHhcCCHHHHHHHHHHHHhCCCC
Q 008276 510 N--IYAKAGRWGDVKRVRKFMNSKGIK 534 (571)
Q Consensus 510 ~--~~~~~g~~~~A~~~~~~m~~~~~~ 534 (571)
. .+....+.++..++++.+...|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 112223344556666666666544
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.25 E-value=0.0013 Score=46.55 Aligned_cols=65 Identities=12% Similarity=0.299 Sum_probs=51.1
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 008276 444 DLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508 (571)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 508 (571)
..|.+.+++++|.++++.+ ...| +...|......+...|++++|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 5677888888888888887 5555 566777778888889999999999999999988776655443
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.24 E-value=0.009 Score=54.21 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHH
Q 008276 439 FACLVDLLGRAGKVEEAYDLIKQM-PMEPN----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ---SGYYVLLSN 510 (571)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 510 (571)
|..-+..+.+.|++++|...|+.+ ...|+ +..+-.+...|...|++++|...|+++.+..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334456666666666665 22232 2344455666666666666666666666655543 334445566
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 008276 511 IYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 511 ~~~~~g~~~~A~~~~~~m~~~ 531 (571)
++...|++++|..++++..+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666544
No 206
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.24 E-value=0.18 Score=47.26 Aligned_cols=76 Identities=16% Similarity=0.199 Sum_probs=33.5
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHH
Q 008276 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423 (571)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 423 (571)
+...|+...|.++-.+..-|+-..|...+.+++..++|++-..+... +-++.-|..++.+|.+.|+..+|..+.
T Consensus 187 li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI 260 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYI 260 (319)
T ss_pred HHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHH
Confidence 34444444444444444444444455555555555554444433211 112233444444444444444444444
Q ss_pred HH
Q 008276 424 KI 425 (571)
Q Consensus 424 ~~ 425 (571)
.+
T Consensus 261 ~k 262 (319)
T PF04840_consen 261 PK 262 (319)
T ss_pred Hh
Confidence 33
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.18 E-value=0.013 Score=45.64 Aligned_cols=107 Identities=13% Similarity=0.046 Sum_probs=66.2
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCC--CChhHHHHHHHHH
Q 008276 269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPN--AISVASVLPACGDLSALLLGRKIHRYVERKKLQ--PNLRLENALVDMY 344 (571)
Q Consensus 269 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 344 (571)
.+..++-..|+.++|+.+|++....|.... ...+..+..++...|++++|..+++........ .+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345567778889999999998888876554 245556667778888888888888877764311 1122222233455
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 008276 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375 (571)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 375 (571)
...|+.++|...+-....++...|..-|..|
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777766544433333344333333
No 208
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.16 E-value=0.0036 Score=53.22 Aligned_cols=36 Identities=8% Similarity=0.099 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 008276 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180 (571)
Q Consensus 145 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 180 (571)
+.+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 345566777777777777777777777776655443
No 209
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.13 E-value=0.24 Score=46.52 Aligned_cols=105 Identities=10% Similarity=0.074 Sum_probs=67.3
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChH
Q 008276 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY 382 (571)
Q Consensus 303 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 382 (571)
+..+.-|...|+...|.++-.+.. .|+...|...+.+++..++|++-..+... +.++..|..++.+|.+.|+..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHH
Confidence 333444555666666666544432 46777777777788888888777766543 455677778888888888877
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHH
Q 008276 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423 (571)
Q Consensus 383 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 423 (571)
+|..+..+ +++ ..-+..|.+.|++.+|.+.-
T Consensus 255 eA~~yI~k-----~~~-----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 255 EASKYIPK-----IPD-----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHh-----CCh-----HHHHHHHHHCCCHHHHHHHH
Confidence 77777665 221 33445566777777766553
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.12 E-value=0.048 Score=53.83 Aligned_cols=114 Identities=12% Similarity=0.106 Sum_probs=65.3
Q ss_pred HHHHHHcCCchHHHHHHH------HHHHCCCC---CCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 008276 271 IAVYANNSMPAEAVDLYL------QMEVHGIE---PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341 (571)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~------~m~~~g~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (571)
...+...|+.++|..+.- -+.+-+-+ .+..+...+..-+.+...+..|.++|..|-+. ..++
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiV 780 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLV 780 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHh
Confidence 344555666666655431 11111112 22334444444455556667777777766543 2466
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--CChhH-----------HHHHHHHHHhcCChHHHHHHHHHHHH
Q 008276 342 DMYAKCGSLTEARTVFDQMRC--QDVVS-----------WTSMISAYGMSGQGYDAVALFSKMLM 393 (571)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~--~~~~~-----------~~~li~~~~~~~~~~~a~~~~~~m~~ 393 (571)
+.....+++.+|..+-+..++ +|+.. |.-.-.+|.+.|+..+|..+++++..
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 777888888888888888776 33321 22233456677777777777777654
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.032 Score=48.75 Aligned_cols=134 Identities=11% Similarity=0.069 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC----CCCCHHHHHHHH
Q 008276 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK----LVPRIEHFACLV 443 (571)
Q Consensus 368 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~ 443 (571)
-+.++..+.-.|.+.-....+.+.++...+-++.....+.+.-...|+.+.|...|+...+..+ ..-...+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455556666677777777777777765455666667777777777888888888876654322 111222222233
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276 444 DLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501 (571)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 501 (571)
..|.-++++.+|...+.++ ..+| ++...|.-.-...-.|+..+|++.++.+.+..|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3445556777777777776 2223 44444444444455677777777777777777643
No 212
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.028 Score=50.48 Aligned_cols=105 Identities=16% Similarity=0.105 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCC-CHHHH
Q 008276 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG---KVEEAYDLIKQM-PMEP-NERIW 471 (571)
Q Consensus 397 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~ 471 (571)
+-|...|..|...|...|+++.|...|....+. ..+++..+..+.+++.... ...++..+|+++ ..+| |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 336779999999999999999999999998873 3456666777777765443 467888899988 5666 56666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 008276 472 GSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503 (571)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 503 (571)
..|...+...|++.+|...|+.+++..|++..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 66777888999999999999999998876553
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.09 E-value=0.0023 Score=52.78 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCCc
Q 008276 470 IWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN-----SKGIKKMPG 538 (571)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 538 (571)
+...++..+...|++++|+..+++++..+|-+...|..++.+|...|+..+|.++|+++. +-|+.|.|.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 455667778889999999999999999999999999999999999999999999998885 457776654
No 214
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.08 E-value=0.37 Score=47.74 Aligned_cols=181 Identities=13% Similarity=0.137 Sum_probs=118.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQD---VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409 (571)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 409 (571)
+..+|...+..-.+.|+.+.+.-+|+.+.-|- ...|-..+.-....|+.+-|..++....+--.+-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45677777777888899999999998887542 234555555555668888888877766654222222221111222
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHH----HHH-HH
Q 008276 410 CSHAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRAGKVEEAY---DLIKQM-PMEPNERIWGSL----VAA-CC 479 (571)
Q Consensus 410 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l----~~~-~~ 479 (571)
+-..|+++.|..+++.+.+. . |+. ..-..-+....+.|..+.+. +++... ..+.+......+ .+- +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 34567999999999999875 3 544 33333455567788888887 444444 222232222222 222 33
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516 (571)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 516 (571)
-.++.+.|..++.++.+..|++...|..++......+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 4789999999999999999999999998888776655
No 215
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.05 E-value=0.43 Score=47.98 Aligned_cols=129 Identities=9% Similarity=0.030 Sum_probs=65.1
Q ss_pred hHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCc--------ccHHHHHHHhhcCCChHHHH
Q 008276 80 MVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDC--------YTYPCVLKACSGSNSLLVGL 150 (571)
Q Consensus 80 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~--------~~~~~li~~~~~~~~~~~a~ 150 (571)
+++|.+..+.- |.++.|..+.......-.++.|...|-+.... |++.-. ..-..=+ -+--|++++|+
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHhh
Confidence 45555544432 45567777777666666666666655444321 111000 0000001 11235666666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCC-----CchhHHHHHHHHHhCCCchHHHHHHHH
Q 008276 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-----DVVTWNSMVAGYAQNGRFDEALDVCRE 221 (571)
Q Consensus 151 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~ 221 (571)
+++-+|-+.. ..+..+.+.|++-...++++.-... -..+|+.+...++....|++|.+.|..
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6665554432 2345555666666666666543321 123566666666666666666666654
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.03 E-value=0.13 Score=45.05 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=39.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCCHHHHHH
Q 008276 474 LVAACCLYSNMDIGILAADHIFHLAPNQSG---YYVLLSNIYAKAGRWGDVKR 523 (571)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 523 (571)
+...|.+.|.+..|..-++.+++..|+.+. +...++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 455688999999999999999999987755 56788889999999885543
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.01 E-value=0.0016 Score=46.79 Aligned_cols=62 Identities=8% Similarity=0.099 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 469 RIWGSLVAACCLYSNMDIGILAADHIFHLA----PN---QSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
.+++.+...|...|++++|+..+++++++. ++ ...++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466777788888888888888888877632 22 245778888999999999999998887653
No 218
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.02 Score=53.50 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 008276 437 EHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514 (571)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 514 (571)
..+..+.-++.+.+++.+|+....+. ..+| |.-..--=..+|...|+++.|...|++++++.|.|..+...++.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45677888899999999999998877 4444 666766677889999999999999999999999999999999998888
Q ss_pred cCCHHHH-HHHHHHHHhC
Q 008276 515 AGRWGDV-KRVRKFMNSK 531 (571)
Q Consensus 515 ~g~~~~A-~~~~~~m~~~ 531 (571)
..++.+. .++|..|..+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7776665 7889999754
No 219
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.89 E-value=0.036 Score=44.15 Aligned_cols=89 Identities=18% Similarity=0.180 Sum_probs=56.8
Q ss_pred HHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHh
Q 008276 443 VDLLGRAGKVEEAYDLIKQM----PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG---YYVLLSNIYAK 514 (571)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 514 (571)
.....+.|++++|.+.|+.+ +..| ....-..++.++.+.+++++|...+++.+++.|.++. ++...+-++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 44445667777777777766 2223 3445566777888888888888888888888876655 33344444444
Q ss_pred cCC---------------HHHHHHHHHHHHhC
Q 008276 515 AGR---------------WGDVKRVRKFMNSK 531 (571)
Q Consensus 515 ~g~---------------~~~A~~~~~~m~~~ 531 (571)
... ..+|..-|+++++.
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 443 55666666666644
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.89 E-value=0.21 Score=43.76 Aligned_cols=182 Identities=10% Similarity=-0.014 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCC--CCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 008276 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE--PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342 (571)
Q Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 342 (571)
...-.....+...|++++|...|+.+...... --......++.++.+.|+++.|...++...+.-......-+...+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 33445566778889999999999999875311 1234555677788888999999999998887643222222222222
Q ss_pred HHHhcCCHHHHHHHHhhCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC
Q 008276 343 MYAKCGSLTEARTVFDQMRCQD-------VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL 415 (571)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 415 (571)
+.+........ + ....| ...+..++.-|=......+|...+..+.+. - -. .-..+.+-|.+.|.
T Consensus 86 g~~~~~~~~~~---~--~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~--l-a~-~e~~ia~~Y~~~~~ 156 (203)
T PF13525_consen 86 GLSYYKQIPGI---L--RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR--L-AE-HELYIARFYYKRGK 156 (203)
T ss_dssp HHHHHHHHHHH---H---TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH--H-HH-HHHHHHHHHHCTT-
T ss_pred HHHHHHhCccc---h--hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH--H-HH-HHHHHHHHHHHccc
Confidence 22211111111 0 00111 112444444444455555555544444331 0 01 11224556777788
Q ss_pred HHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 008276 416 LEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRAGKVEEA 455 (571)
Q Consensus 416 ~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 455 (571)
+..|..-++.+.+++.-.+.. .....++.+|.+.|..+.|
T Consensus 157 y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 157 YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 888888787777754332222 3455666777777766644
No 221
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.83 E-value=0.068 Score=41.40 Aligned_cols=140 Identities=12% Similarity=0.097 Sum_probs=81.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008276 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455 (571)
Q Consensus 376 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (571)
.-.|..++..++..+...+ .+..-++-++--....-+-+-..+.++.+-+.+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3456777777777776653 133344545544444445555555555554322221 12333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008276 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534 (571)
Q Consensus 456 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 534 (571)
..-+-.+ ..+....+..+..+...|+-+.-.+++..+.+.+..++.+..-++.+|.+.|+..++.+++++..++|++
T Consensus 76 i~C~~~~--n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKR--NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHT--T---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHh--cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3333332 1234455667788889999999999999988777778999999999999999999999999999999874
No 222
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.43 Score=42.03 Aligned_cols=137 Identities=12% Similarity=0.020 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHH-----HH
Q 008276 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN-----AL 340 (571)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l 340 (571)
.-+.++..+...|.+.-.++.+++.++...+.+......+.+...+.||.+.|...|+...+..-..+...++ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666777778888888888888887656677777788888888899998888888776543233333332 33
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 008276 341 VDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404 (571)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 404 (571)
...|.-.+++..|...+.++.. .++...|.-.-+..-.|+..+|++.++.|.. ..|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 3445566777778888877764 3444555555555566788888888888877 455544333
No 223
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.63 Score=43.89 Aligned_cols=151 Identities=11% Similarity=-0.049 Sum_probs=79.4
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH--HhccCCchHHHHHHHHHHHHcCCCCChhHHHH----------
Q 008276 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP--ACGDLSALLLGRKIHRYVERKKLQPNLRLENA---------- 339 (571)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------- 339 (571)
.++...|++++|.+.--..++.. .. ..+...++ ++...++.+.+...|++.+..+ |+...-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-AT--NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cc--hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 45666778888877666555432 11 22223333 2344567777777777777654 32221111
Q ss_pred ---HHHHHHhcCCHHHHHHHHhhCCC-------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 008276 340 ---LVDMYAKCGSLTEARTVFDQMRC-------QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLS 408 (571)
Q Consensus 340 ---l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~ 408 (571)
-..-..+.|++..|.+.|.+... ++...|........+.|+.++|+.--++..+ +.|... .|..-..
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~ 329 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRAN 329 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHH
Confidence 11223455666666666666553 2333455555555666666666666655554 333221 3333333
Q ss_pred HhhcCCCHHHHHHHHHHHHHh
Q 008276 409 ACSHAGLLEEGRYYFKIMTEQ 429 (571)
Q Consensus 409 ~~~~~~~~~~a~~~~~~~~~~ 429 (571)
++...++|++|.+-++...+.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 444556666666666665543
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.63 E-value=0.0042 Score=44.60 Aligned_cols=60 Identities=12% Similarity=0.209 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 008276 438 HFACLVDLLGRAGKVEEAYDLIKQM-------P-MEPN-ERIWGSLVAACCLYSNMDIGILAADHIFHL 497 (571)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 497 (571)
+++.+...|...|++++|++.|++. + ..|+ ..++..+...+...|++++|++.++++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555555566666666655555544 1 1121 345566666677777777777777776653
No 225
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.59 E-value=0.037 Score=43.70 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008276 394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446 (571)
Q Consensus 394 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (571)
....|+..+..+++.+|+..+++..|.++.+...+.++++.+..+|..|++=.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34667888888888888888888888888888888888777777777776643
No 226
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.58 E-value=0.74 Score=44.02 Aligned_cols=96 Identities=6% Similarity=0.015 Sum_probs=60.6
Q ss_pred CChHHHHHHHHHHHHhhcCCCChhHHHHHHHH--hhcCCChHHHHHHHcccCC------------------CChhhHHHH
Q 008276 42 PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRT--YGACGQMVDTRHVFDEITN------------------KNVVFFNVL 101 (571)
Q Consensus 42 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~------------------~~~~~~~~l 101 (571)
.+++........+.+..|. + .|..|..+ +-+.+.+.+|.+.|....+ ++...-+..
T Consensus 59 ~nld~Me~~l~~l~~~~~~--s--~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~ 134 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQFGK--S--AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIE 134 (549)
T ss_pred hhHHHHHHHHHHHHHhcCC--c--hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHH
Confidence 4556666666666533332 2 33333333 3467889999988865432 122234566
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCC----CCCCcccHHHHHHHhh
Q 008276 102 IRSYVNNYLYYDALHVYKNMSVHG----FDPDCYTYPCVLKACS 141 (571)
Q Consensus 102 i~~~~~~~~~~~A~~~~~~m~~~g----~~p~~~~~~~li~~~~ 141 (571)
+.++...|++.++..+++++...= ...+..+|+.++-.++
T Consensus 135 a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 135 AHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 788999999999999999886543 3378888887554443
No 227
>PRK11906 transcriptional regulator; Provisional
Probab=96.58 E-value=0.056 Score=51.96 Aligned_cols=142 Identities=9% Similarity=0.087 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHhhcC---------CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 008276 381 GYDAVALFSKMLM-SGLCPDSI-AFVSVLSACSHA---------GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449 (571)
Q Consensus 381 ~~~a~~~~~~m~~-~g~~p~~~-~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (571)
.+.|+.+|.+... ..+.|+.. .|..+..++... .+..+|.++-++..+. -+.|+.....+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 4567777777772 12556544 555554443221 2234455555555542 234455555556666666
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH--HHHHHHHHhcCCHHHHHHHH
Q 008276 450 GKVEEAYDLIKQM-PMEPN-ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY--VLLSNIYAKAGRWGDVKRVR 525 (571)
Q Consensus 450 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~ 525 (571)
++++.|...|++. ...|| ..+|-.....+.-.|+.++|.+.++++++++|....+- ...++.|+..+ .++|+.++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 6677777777776 55563 34454455555567777777777777777777544332 23333444443 45555544
No 228
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.94 Score=46.37 Aligned_cols=73 Identities=18% Similarity=0.306 Sum_probs=44.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008276 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN 483 (571)
Q Consensus 404 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 483 (571)
...+..|.+.|-+++-.-++.+| | .+..+|.-.--+.++.++|.++.++- .|...|..||..+...-.
T Consensus 638 ekA~eiC~q~~~~~E~VYlLgrm----G-----n~k~AL~lII~el~die~AIefvKeq---~D~eLWe~LI~~~ldkPe 705 (846)
T KOG2066|consen 638 EKALEICSQKNFYEELVYLLGRM----G-----NAKEALKLIINELRDIEKAIEFVKEQ---DDSELWEDLINYSLDKPE 705 (846)
T ss_pred HHHHHHHHhhCcHHHHHHHHHhh----c-----chHHHHHHHHHHhhCHHHHHHHHHhc---CCHHHHHHHHHHhhcCcH
Confidence 44455566666666666666666 3 12333334444567777777777664 478889998887765554
Q ss_pred HHHHH
Q 008276 484 MDIGI 488 (571)
Q Consensus 484 ~~~A~ 488 (571)
+-.++
T Consensus 706 ~~~~l 710 (846)
T KOG2066|consen 706 FIKAL 710 (846)
T ss_pred HHHHH
Confidence 44444
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.50 E-value=0.025 Score=50.15 Aligned_cols=102 Identities=16% Similarity=0.183 Sum_probs=57.8
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 008276 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM----PMEP-NERIWGSLV 475 (571)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~ 475 (571)
.|+.-+.. .+.|++..|...|....+.+.-.+ ....+.-|.+++...|++++|..+|..+ +..| -+..+.-|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45554443 355667777777777766432111 1123344666666677777766666655 2223 234555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 008276 476 AACCLYSNMDIGILAADHIFHLAPNQSGY 504 (571)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 504 (571)
....+.|+.++|...|+++.+..|..+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 55666666666666666666666655443
No 230
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.46 E-value=0.87 Score=43.47 Aligned_cols=128 Identities=10% Similarity=0.121 Sum_probs=97.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHH
Q 008276 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIW-GSLVAACC 479 (571)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~ 479 (571)
.|...+....+..-++.|..+|-++.+..-+.+++.+++++++.++ .|+...|-.+|+-- ..-||...| .-.+.-+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4566677777778889999999999887226788899999999775 67888899998854 334555444 55667777
Q ss_pred hcCCHHHHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 480 LYSNMDIGILAADHIFHLAPNQ--SGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
..+|-+.|..+|+..++.-..+ ..+|..++.--..-|+...|..+-++|.+
T Consensus 478 ~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 478 RINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 8999999999999776643222 56899999988889999888877766653
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.22 Score=44.79 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=64.5
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHH
Q 008276 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS---LVAACCLYSNMDI 486 (571)
Q Consensus 410 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~ 486 (571)
....|++.+|...|+..... .+-+...-..++++|...|+.+.|..++..++.+-....+.. -+..+.+..+..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 44566667777766666553 222334445566677777777777777776643332222222 1222223333322
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 487 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
... +++-...+|+|...-..++..|...|+.++|.+.+=.+..+
T Consensus 222 ~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 22334456777777777777777777777777665555433
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.39 E-value=0.57 Score=44.49 Aligned_cols=164 Identities=9% Similarity=-0.029 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 008276 367 SWTSMISAYGMSGQGYDAVALFSKMLMSG---LCPDSIAFVSVLSACSH---AGLLEEGRYYFKIMTEQYKLVPRIEHFA 440 (571)
Q Consensus 367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 440 (571)
+...++-+|....+++..+++.+.+.... +.-....-....-++.+ .|+.++|++++..+... ...+++.+|.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHH
Confidence 34455567999999999999999998741 11122222334455666 89999999999996554 6678888888
Q ss_pred HHHHHHHh---------cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC-HH---HHHHHH----HHHHhhC----
Q 008276 441 CLVDLLGR---------AGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSN-MD---IGILAA----DHIFHLA---- 498 (571)
Q Consensus 441 ~l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~-~~---~A~~~~----~~~~~~~---- 498 (571)
.+.+.|.. ....++|.+.|.+. ..+|+...--.++..+...|. .+ +..++- ....+.+
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 88877643 12477888888877 556654433223333333332 22 222222 1111222
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 499 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
-.+-..+..++.+..-.|++++|.+..++|...
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 123334558888999999999999999999865
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.34 E-value=0.031 Score=53.52 Aligned_cols=61 Identities=11% Similarity=0.026 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI----EHFACLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
+...++.+..+|...|++++|...|++..+. .|+. ..|..+..+|...|+.++|++.++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3446666677777777777777777776643 3442 24666777777777777777777665
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.28 E-value=0.35 Score=48.43 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=102.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHhhc----CCCHHHHHHHHHHHHHhcCCCCCHHHH
Q 008276 370 SMISAYGMSGQGYDAVALFSKMLMSG-LCPDS-----IAFVSVLSACSH----AGLLEEGRYYFKIMTEQYKLVPRIEHF 439 (571)
Q Consensus 370 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 439 (571)
.++....-.||-+.+++.+.+..+.+ +.-.. -.|..++..++. ..+.+.|.++++.+.+. -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 34444444566666666666554422 21111 123333333332 45778899999999874 3454443
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHhCC-C-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH-HHHHH
Q 008276 440 -ACLVDLLGRAGKVEEAYDLIKQMP-M-----EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV-LLSNI 511 (571)
Q Consensus 440 -~~l~~~~~~~g~~~~A~~~~~~~~-~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~l~~~ 511 (571)
-.-.+.+...|++++|++.|++.. . +.....+--+...+....++++|...+.++.+.+.-+..+|. ..+-+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 344567778899999999999761 1 113345556677788899999999999999998776666555 44445
Q ss_pred HHhcCCH-------HHHHHHHHHHHh
Q 008276 512 YAKAGRW-------GDVKRVRKFMNS 530 (571)
Q Consensus 512 ~~~~g~~-------~~A~~~~~~m~~ 530 (571)
+...|+. ++|.+++++...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 5678888 888888887764
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.51 Score=42.58 Aligned_cols=172 Identities=13% Similarity=0.071 Sum_probs=110.6
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 008276 352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431 (571)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 431 (571)
...++++....+....-..-.......|++.+|...|....... +-+...-..++.+|...|+.+.|..++..+-.. -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 44445555444322222222334567888899999888888752 223456667888889999999999999887442 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCchhHHHH
Q 008276 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLA--PNQSGYYVLL 508 (571)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l 508 (571)
-.........-+..+.+.....+...+-.+..-.| |...-..+...+...|+.+.|.+.+=.+++.+ -.+......+
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11111222334556666666555555555554456 66677778888888999999998888887765 5667778888
Q ss_pred HHHHHhcCCHHHHHHHH
Q 008276 509 SNIYAKAGRWGDVKRVR 525 (571)
Q Consensus 509 ~~~~~~~g~~~~A~~~~ 525 (571)
+..+.-.|..+.+...+
T Consensus 279 le~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 279 LELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHhcCCCCHHHHHH
Confidence 88888777555544333
No 236
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.21 E-value=1.5 Score=43.62 Aligned_cols=91 Identities=11% Similarity=0.096 Sum_probs=52.1
Q ss_pred hhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhc-CCChHHHHHHHcccCC------CChhhHHHHHH
Q 008276 31 GDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGA-CGQMVDTRHVFDEITN------KNVVFFNVLIR 103 (571)
Q Consensus 31 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~------~~~~~~~~li~ 103 (571)
|..++..-.+.|..+.+..+|++-+ .+++.+...|...+..+.. .|+.+...+.|+.... .+...|...|.
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv--~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie 159 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGV--QAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIE 159 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence 3344444555566666666666665 5556666666655554443 3555556666655443 23345666666
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 008276 104 SYVNNYLYYDALHVYKNMSV 123 (571)
Q Consensus 104 ~~~~~~~~~~A~~~~~~m~~ 123 (571)
--..++++.....+|++..+
T Consensus 160 ~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 160 FENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHhccccHHHHHHHHHHHHh
Confidence 66666666666666666655
No 237
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.15 E-value=0.17 Score=46.55 Aligned_cols=48 Identities=6% Similarity=0.038 Sum_probs=26.8
Q ss_pred HHHcCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHHhccCCchHHHHHH
Q 008276 274 YANNSMPAEAVDLYLQMEVHG--IEPNAISVASVLPACGDLSALLLGRKI 321 (571)
Q Consensus 274 ~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~ 321 (571)
+....+.++|+..|.+-..+- ..-...++..+..+.++.|.++++...
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 445667788887777765431 111224455555566666666555443
No 238
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.14 E-value=0.1 Score=46.20 Aligned_cols=126 Identities=14% Similarity=0.180 Sum_probs=86.5
Q ss_pred HHHHHccCC--CCCchhHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHH
Q 008276 184 ARRVLNDMP--SKDVVTWNSMVAGYAQN-----GRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMF 256 (571)
Q Consensus 184 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~ 256 (571)
.+..|.... ++|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.||..+-+.....-..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nv----- 127 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNV----- 127 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHH-----
Confidence 344555555 46777888888777653 556777778889999999999999999998876654421111
Q ss_pred hhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCch-HHHHHHHHHHH
Q 008276 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL-LLGRKIHRYVE 326 (571)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~ 326 (571)
+....-.|- .+-+-+++++++|...|+.||..+-..+++++.+.+-. .+..++.-.|-
T Consensus 128 ----------fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 128 ----------FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred ----------HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 222222222 24466899999999999999999999999999887743 33333333333
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.13 E-value=0.039 Score=42.56 Aligned_cols=88 Identities=17% Similarity=0.066 Sum_probs=43.0
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCC
Q 008276 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM----PMEPN--ERIWGSLVAACCLYSN 483 (571)
Q Consensus 410 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~ 483 (571)
++..|+++.|++.|.+... -.+.....||.-..++.-+|+.++|++-+++. +-+.. -..|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4455666666666655553 22334455555556665566666555555544 11110 1112222223444555
Q ss_pred HHHHHHHHHHHHhhCC
Q 008276 484 MDIGILAADHIFHLAP 499 (571)
Q Consensus 484 ~~~A~~~~~~~~~~~p 499 (571)
.+.|..-|+.+-+++.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 5555555555555553
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.05 E-value=0.17 Score=45.08 Aligned_cols=94 Identities=21% Similarity=0.305 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHH
Q 008276 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCP--DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVD 444 (571)
Q Consensus 368 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~ 444 (571)
|+.-+..+ +.|++..|...|...++....- ....+.-|..++...|+++.|..+|..+.+.++-.|.. +.+..|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 55444433 3455666666666666532110 11133345566666666666666666666554444433 55555666
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 008276 445 LLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~ 462 (571)
...+.|+.++|...|+++
T Consensus 224 ~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 224 SLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 666666666666666655
No 241
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.02 E-value=0.029 Score=46.86 Aligned_cols=103 Identities=12% Similarity=0.061 Sum_probs=71.6
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHh
Q 008276 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRI-----EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNE-RIWGSLVAACCL 480 (571)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~ 480 (571)
.-+.+.|++++|..-|..+.+. .++.. ..|..-.-++.+.+.++.|++-..+. .+.|.. ....--..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 4467889999999999888874 33322 34556666788888888888877766 555532 222223446777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512 (571)
Q Consensus 481 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 512 (571)
...+++|+.-|+++.+.+|....+....+..-
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 88899999999999999987776666655543
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.032 Score=52.21 Aligned_cols=65 Identities=11% Similarity=0.018 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
..+++.+..+|.+.+++..|+....++++.+|+|..+.+.-+.+|...|.++.|+..|+++.+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 34677788889999999999999999999999999999999999999999999999999998654
No 243
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.97 E-value=0.14 Score=42.15 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=21.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276 442 LVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHI 494 (571)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (571)
++..+...|++++|..+++++ ...| +...|..++.++...|+...|++.|+++
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444444444444444444 2223 3444444444444444444444444443
No 244
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=1 Score=39.32 Aligned_cols=86 Identities=13% Similarity=0.083 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-----C--CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCCchhHH
Q 008276 439 FACLVDLLGRAGKVEEAYDLIKQMP-----M--EPNE-RIWGSLVAACCLYSNMDIGILAADHIFHLA----PNQSGYYV 506 (571)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~--~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~ 506 (571)
+....+.|.+..++++|-..+.+-+ + -|+. ..|...|-.+....|+..|+..++...+.. |.+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 4445555666666666655554431 1 1111 234444455556667777777777655533 55566666
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 008276 507 LLSNIYAKAGRWGDVKRVR 525 (571)
Q Consensus 507 ~l~~~~~~~g~~~~A~~~~ 525 (571)
.|+.+| ..|+.+++..++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 666654 456666665543
No 245
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.89 E-value=1.2 Score=39.68 Aligned_cols=191 Identities=18% Similarity=0.145 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-Hh
Q 008276 337 ENALVDMYAKCGSLTEARTVFDQMR-----CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS-AC 410 (571)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~-~~ 410 (571)
.......+...+++..+...+.... ......+......+...+++..+.+.+.........+. ........ .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 140 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHH
Confidence 3334444444444444444444332 12223344444444444555555555555544322211 11111111 34
Q ss_pred hcCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHH
Q 008276 411 SHAGLLEEGRYYFKIMTEQYKL--VPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN--ERIWGSLVAACCLYSNMD 485 (571)
Q Consensus 411 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~ 485 (571)
...|+++.+...++..... .. ......+......+...++.+.+...+.+. ...++ ...+..+...+...++++
T Consensus 141 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 141 YELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 4555555555555555321 10 011222223333344455555555555544 22222 344444555555555555
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 486 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
.|...+.......|.....+..+...+...|.++++...+.+..
T Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555444444444444444445555555555443
No 246
>PRK11906 transcriptional regulator; Provisional
Probab=95.82 E-value=0.55 Score=45.46 Aligned_cols=140 Identities=15% Similarity=0.075 Sum_probs=90.5
Q ss_pred CHHHHHHHHhhCC---CCC---hhHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 008276 349 SLTEARTVFDQMR---CQD---VVSWTSMISAYGMS---------GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413 (571)
Q Consensus 349 ~~~~a~~~~~~~~---~~~---~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 413 (571)
..+.|..+|.+.. +-| ...|..+..++... .+..+|.++.++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4567888888877 433 34555555544322 23456777777777753 33666777777777777
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCCHHHHH
Q 008276 414 GLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNER---IWGSLVAACCLYSNMDIGI 488 (571)
Q Consensus 414 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~g~~~~A~ 488 (571)
++++.|...|++... +.||. ..|........-.|+.++|.+.+++. ...|.-. .....+..|+ ....+.|+
T Consensus 352 ~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhH
Confidence 889999999999875 35554 55555666667789999999999884 6666433 2222333444 34567777
Q ss_pred HHHHH
Q 008276 489 LAADH 493 (571)
Q Consensus 489 ~~~~~ 493 (571)
.+|-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 77654
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.38 Score=43.87 Aligned_cols=160 Identities=11% Similarity=-0.018 Sum_probs=88.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHH----HHHHHHHHhcCCHH
Q 008276 378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF----ACLVDLLGRAGKVE 453 (571)
Q Consensus 378 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~ 453 (571)
.|++.+|...++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...++...| ..+.-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45666666666666664 444555666566666777777666666666654 223443222 22333445667777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276 454 EAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN----QSGYYVLLSNIYAKAGRWGDVKRVRKF 527 (571)
Q Consensus 454 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 527 (571)
+|++.-++. .+.| |.-.-.++...+...|+.+++.++..+-...-.. -..-|...+-.+...+.++.|+++|++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 777776665 4444 3334444455555667777777666654321110 112244555556666777777777766
Q ss_pred HHhCCCCCCCceE
Q 008276 528 MNSKGIKKMPGAS 540 (571)
Q Consensus 528 m~~~~~~~~~~~~ 540 (571)
=.-+..+++.+++
T Consensus 273 ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 273 EIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHhhccchhh
Confidence 5545555555433
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.56 E-value=0.56 Score=37.55 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=59.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 008276 372 ISAYGMSGQGYDAVALFSKMLMSGLCP---DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR 448 (571)
Q Consensus 372 i~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (571)
.....+.|++++|.+.|+.+... .+. ....-..++.++.+.+++++|...+++.++.+.-.|++. |...+.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHHH
Confidence 33445566677777777666653 221 223445566666667777777777766666544444432 2223333332
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 008276 449 AGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503 (571)
Q Consensus 449 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 503 (571)
-...+.. +..+ +.+-| .+....|...|+++++.-|++..
T Consensus 95 ~~~~~~~---~~~~~~~drD-------------~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 95 YEQDEGS---LQSFFRSDRD-------------PTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHhhhH---HhhhcccccC-------------cHHHHHHHHHHHHHHHHCcCChh
Confidence 2221111 1111 11111 12245788888889998898753
No 249
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.55 E-value=2.4 Score=40.85 Aligned_cols=150 Identities=12% Similarity=0.005 Sum_probs=84.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC--HH
Q 008276 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP---DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR--IE 437 (571)
Q Consensus 363 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 437 (571)
....+|..++..+.+.|.++.|...+.++...+... .+.....-+..+-..|+..+|...++...+. ....+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345578888888899999999999888887743222 2233444456667778888898888887762 11111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 008276 438 HFACLVDLLGRAGKVEEAYDL-IKQMPMEPNERIWGSLVAACCLY------SNMDIGILAADHIFHLAPNQSGYYVLLSN 510 (571)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 510 (571)
....+...+.. ..+..... ........-..++..+...+... ++.+++...|+.+.+..|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000112233333333334 88889999999999999988888888877
Q ss_pred HHHhc
Q 008276 511 IYAKA 515 (571)
Q Consensus 511 ~~~~~ 515 (571)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 76554
No 250
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.53 E-value=1.6 Score=38.67 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=45.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 474 LVAACCLYSNMDIGILAADHIFHLAPNQSG---YYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
+.+-|.+.|.+..|..-++++++.-|+.+. .+..+..+|.+.|-.++|...-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 455678899999999999999987765544 4556777899999999999887766543
No 251
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.53 E-value=0.21 Score=39.42 Aligned_cols=78 Identities=19% Similarity=0.342 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHH--------------HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 008276 401 IAFVSVLSACSHAGLLEEGRYYFKIMT--------------EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM---- 462 (571)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 462 (571)
.++..++.++++.|+.+....+++..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344445555555555555444443321 11134455566666666666666666666655544
Q ss_pred CCCCCHHHHHHHHHHH
Q 008276 463 PMEPNERIWGSLVAAC 478 (571)
Q Consensus 463 ~~~p~~~~~~~l~~~~ 478 (571)
+++-+...|..|+.-+
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4444455555555543
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.52 E-value=1 Score=36.59 Aligned_cols=127 Identities=9% Similarity=0.026 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 008276 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447 (571)
Q Consensus 368 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (571)
...++..+...+.......+++.+...+ ..+....+.++..|++.+ .......++. . .+.......++.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHH
Confidence 3455666666677777777777777765 345666777777776643 2333344332 1 12222334666777
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 008276 448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY-SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514 (571)
Q Consensus 448 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 514 (571)
+.+.++++.-++.+++. +...+..+... ++++.|.+++++ +.++..|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 77777777777777742 22233333333 777777776664 2355677776665543
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.51 E-value=0.42 Score=47.11 Aligned_cols=156 Identities=12% Similarity=0.107 Sum_probs=89.4
Q ss_pred HHHHHHcCChhHHHHHHH--HHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 008276 102 IRSYVNNYLYYDALHVYK--NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179 (571)
Q Consensus 102 i~~~~~~~~~~~A~~~~~--~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 179 (571)
.....-.++++++.++.+ ++... + +....+.++.-+-+.|..+.|+++..+-. .-.+...+.|
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~-i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg 332 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPN-I--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLG 332 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT
T ss_pred HHHHHHcCChhhhhhhhhhhhhccc-C--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcC
Confidence 345566677787766665 22211 1 13346677777778888888877754322 2345567888
Q ss_pred CHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhC
Q 008276 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKL 259 (571)
Q Consensus 180 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~ 259 (571)
+++.|.++.++.. +...|..|.......|+++-|++.|.+..+
T Consensus 333 ~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------------------------------- 375 (443)
T PF04053_consen 333 NLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD----------------------------------- 375 (443)
T ss_dssp -HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------------------------------------
T ss_pred CHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------------------------------
Confidence 8888888877665 556888888888888888888888877543
Q ss_pred CCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHH
Q 008276 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH 322 (571)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 322 (571)
|..|+-.|...|+.++-.++.+.....| . ++....++.-.|+.++..+++
T Consensus 376 -------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 376 -------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp -------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred -------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHH
Confidence 5555666666777666666666555554 1 233333333445555444443
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.48 E-value=0.68 Score=44.97 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 472 GSLVAACCLYSNMDIGILAADHIFHLAPN--QSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
..+..++.+.|+.++|++.++++.+..|. +..++..|+.+|...+++.++..++.+..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 33444455566666666666666555442 33455566666666666666666655543
No 255
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.47 E-value=2.3 Score=40.01 Aligned_cols=278 Identities=12% Similarity=0.007 Sum_probs=134.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCChhHHHHHHHH--hhcCCChHHHHHHHcccCC-CChh--hHHHHHHHHHHcCChhHHH
Q 008276 41 YPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRT--YGACGQMVDTRHVFDEITN-KNVV--FFNVLIRSYVNNYLYYDAL 115 (571)
Q Consensus 41 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~-~~~~--~~~~li~~~~~~~~~~~A~ 115 (571)
.||-..|.+.-.+.. .-+..|......|+.+ -.-.|++++|.+-|+.|.+ |... -...|.-..-+.|..+.|.
T Consensus 97 AGda~lARkmt~~~~--~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARAS--KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHH--hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 366666666555443 1223344434444332 2345777777777777764 2222 1222333334566677776
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhC-CCCchhH--HHHHHHHHH---hCCCHHHHHHHHc
Q 008276 116 HVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFN--GNGLVAMYG---KCGCLKEARRVLN 189 (571)
Q Consensus 116 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~--~~~l~~~~~---~~g~~~~A~~~~~ 189 (571)
..-+..-+.- +--...+...+...+..|+++.|+++++.-+... +.++..- -..|+.+-. -.-+...|...-.
T Consensus 175 ~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 6666655431 2234556667777777777777777777665543 2233211 111221110 1122333333333
Q ss_pred cCCC--CCch-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHH--HHhhCCCCCh
Q 008276 190 DMPS--KDVV-TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKE--MFLKLDNKNL 264 (571)
Q Consensus 190 ~~~~--~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~--~~~~~~~~~~ 264 (571)
+..+ ||.. .--.-...+.+.|+..++-.+++.+-+....|+.. .+....+.|+...+.+.. -+..+.+.+.
T Consensus 254 ~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nna 329 (531)
T COG3898 254 EANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNA 329 (531)
T ss_pred HHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccch
Confidence 2222 3322 12223456777788888888888777765555432 222233444433333322 2333444455
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHh-ccCCchHHHHHHHHHHHH
Q 008276 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC-GDLSALLLGRKIHRYVER 327 (571)
Q Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~ 327 (571)
.+.-.+..+-...|++..|..--+.... ..|....|..|...- ...|+-.++...+.+..+
T Consensus 330 es~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 330 ESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 5555555555555555555444433332 245555554444432 233555555555554444
No 256
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.42 E-value=4.1 Score=42.62 Aligned_cols=52 Identities=8% Similarity=-0.063 Sum_probs=29.6
Q ss_pred CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 008276 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313 (571)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 313 (571)
+.+...-+....+....|+.++|......+-..| ......+..++..+.+.|
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 3445555666777777777777766666665444 233444555555444333
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.41 E-value=1.8 Score=38.41 Aligned_cols=139 Identities=13% Similarity=0.100 Sum_probs=76.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 008276 374 AYGMSGQGYDAVALFSKMLMSGL--CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451 (571)
Q Consensus 374 ~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (571)
.-.+.|++++|.+.|+.+..... +-...+...++.++.+.++++.|....++....++-.||.. |-..+.++.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs---- 117 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS---- 117 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH----
Confidence 34566777777777777665311 11233555566666677777777777777776666666653 222333333
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-----------------hHHHHHHHHH
Q 008276 452 VEEAYDLIKQMP-MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG-----------------YYVLLSNIYA 513 (571)
Q Consensus 452 ~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----------------~~~~l~~~~~ 513 (571)
.|..+. ..-|.. -...|..-|+..+...|++.- .=..++.-|.
T Consensus 118 ------~~~~i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~ 178 (254)
T COG4105 118 ------YFFQIDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYL 178 (254)
T ss_pred ------HhccCCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111110 000110 112334444444444454422 2336677899
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCC
Q 008276 514 KAGRWGDVKRVRKFMNSKGIKKMP 537 (571)
Q Consensus 514 ~~g~~~~A~~~~~~m~~~~~~~~~ 537 (571)
+.|.+..|..-+++|.+. .+.++
T Consensus 179 kr~~~~AA~nR~~~v~e~-y~~t~ 201 (254)
T COG4105 179 KRGAYVAAINRFEEVLEN-YPDTS 201 (254)
T ss_pred HhcChHHHHHHHHHHHhc-ccccc
Confidence 999999999999999877 44444
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.23 Score=45.30 Aligned_cols=116 Identities=10% Similarity=-0.004 Sum_probs=94.2
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHH----HHHHHHHhcCCH
Q 008276 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PM-EPNERIWG----SLVAACCLYSNM 484 (571)
Q Consensus 411 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~----~l~~~~~~~g~~ 484 (571)
...|+..+|-..|+++.+ ..+.|...+...=.++.-.|+.+.-...++++ +. .||.++|. .+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 356888888899999988 56777777777778888899988888888887 32 56654443 233345579999
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276 485 DIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528 (571)
Q Consensus 485 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 528 (571)
++|++..+++.+++|.+.-+...++.++...|++.++.+...+-
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99999999999999999999999999999999999999987653
No 259
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.34 E-value=0.041 Score=31.73 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500 (571)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 500 (571)
.+|..+...+...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35667777777788888888888888877775
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.32 E-value=1.9 Score=38.25 Aligned_cols=219 Identities=18% Similarity=0.081 Sum_probs=148.5
Q ss_pred CCchHHHHHHHHHHHCCCC-CCHHHHHHHHHHhccCCchHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHH
Q 008276 278 SMPAEAVDLYLQMEVHGIE-PNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEART 355 (571)
Q Consensus 278 g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 355 (571)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555543222 12455566666677777777777777766652 224445555566666777777888888
Q ss_pred HHhhCCC--CCh-hHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 008276 356 VFDQMRC--QDV-VSWTSMIS-AYGMSGQGYDAVALFSKMLMSGLCP----DSIAFVSVLSACSHAGLLEEGRYYFKIMT 427 (571)
Q Consensus 356 ~~~~~~~--~~~-~~~~~li~-~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 427 (571)
.+..... ++. ........ .+...|+++.|...+.+... ..| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8877664 222 22333333 68889999999999999866 333 23344444445677889999999999988
Q ss_pred HhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276 428 EQYKLVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-ERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500 (571)
Q Consensus 428 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 500 (571)
.. ... ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 63 233 4677788888899999999999998887 44554 445555555555777899999999999998886
No 261
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.32 E-value=0.058 Score=30.97 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276 470 IWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501 (571)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 501 (571)
.|..+...+...|++++|+..++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566667777777777777777777777754
No 262
>PRK15331 chaperone protein SicA; Provisional
Probab=95.27 E-value=0.53 Score=38.64 Aligned_cols=88 Identities=11% Similarity=0.015 Sum_probs=66.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCH
Q 008276 407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PM-EPNERIWGSLVAACCLYSNM 484 (571)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~ 484 (571)
..-+...|++++|..+|.-+..- -.-+..-+..|..++-..+++++|...|... -. .-|+..+-.....+...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 34456789999999999988763 2345566788888888899999999998866 11 22444455567788889999
Q ss_pred HHHHHHHHHHHh
Q 008276 485 DIGILAADHIFH 496 (571)
Q Consensus 485 ~~A~~~~~~~~~ 496 (571)
+.|+..|+.+++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998887
No 263
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=4.2 Score=41.72 Aligned_cols=124 Identities=14% Similarity=0.025 Sum_probs=74.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCC--hHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 008276 99 NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS--LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYG 176 (571)
Q Consensus 99 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 176 (571)
..++.-+...+.|..|+++-..+...-.+. ...|.....-+.+..+ -+.+.+..++=+... ..+...|..+.+...
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHH
Confidence 456777888888999998887775432222 4455555544444422 122222222222221 134556777888888
Q ss_pred hCCCHHHHHHHHccCCCC--------CchhHHHHHHHHHhCCCchHHHHHHHHHHH
Q 008276 177 KCGCLKEARRVLNDMPSK--------DVVTWNSMVAGYAQNGRFDEALDVCREMES 224 (571)
Q Consensus 177 ~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 224 (571)
.+|+.+-|..+++.=+.. +..-+...+.-+.+.|+.+-...++-.+.+
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 899999999888644321 223455566667777887777777766654
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.06 E-value=3 Score=40.78 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 008276 369 TSMISAYGMSGQGYDAVALFSKMLMSGLC-PDSIAFVSVLSACSHAGLLEEGRYYFKIM 426 (571)
Q Consensus 369 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 426 (571)
..+..++-+.|+.++|++.+++|.+.... -+......|+.++...+.+.++..++.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34555555667777777777776653211 12225556666677777777777666665
No 265
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.96 E-value=1.6 Score=35.39 Aligned_cols=89 Identities=16% Similarity=0.212 Sum_probs=57.8
Q ss_pred cCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHH
Q 008276 28 LLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107 (571)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 107 (571)
......++..+...+.+..+...++.+. ..+ +.++..++.++..|++.+ ..+..+.+.. ..+......+++.|.+
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~-~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESAL-KLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEK 81 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHH-ccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHH
Confidence 3455667777877788888888888887 555 367778888888888754 3444444442 2233344446666666
Q ss_pred cCChhHHHHHHHHH
Q 008276 108 NYLYYDALHVYKNM 121 (571)
Q Consensus 108 ~~~~~~A~~~~~~m 121 (571)
.+-++++.-++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 66666666666554
No 266
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=1.6 Score=45.23 Aligned_cols=138 Identities=12% Similarity=0.089 Sum_probs=66.8
Q ss_pred HHHHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHH
Q 008276 342 DMYAKCGSLTEARTVFDQMRC-QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420 (571)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 420 (571)
+-+.+.|++++|...|-+... -++ ..+|.-|.......+-..+++.+.+.|+.-... -..|+.+|.+.++.+.-.
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dh-ttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDH-TTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHcccccchh-HHHHHHHHHHhcchHHHH
Confidence 334455666666655554432 111 123344455555555566666666665543322 244566666666666655
Q ss_pred HHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008276 421 YYFKIMTEQYKLV-PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493 (571)
Q Consensus 421 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (571)
++.+..- . |.. -|. ...++.+.+.+-.++|..+-.+.+. .......++ -..+++++|++.++.
T Consensus 452 efI~~~~-~-g~~~fd~---e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~ill---e~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 452 EFISKCD-K-GEWFFDV---ETALEILRKSNYLDEAELLATKFKK--HEWVLDILL---EDLHNYEEALRYISS 515 (933)
T ss_pred HHHhcCC-C-cceeeeH---HHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhc
Confidence 5554432 1 211 122 2344555555556666555555432 222222222 235666666666553
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.87 E-value=3.2 Score=38.41 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=14.2
Q ss_pred HhCCCchHHHHHHHHHHHC
Q 008276 207 AQNGRFDEALDVCREMESL 225 (571)
Q Consensus 207 ~~~g~~~~a~~~~~~m~~~ 225 (571)
.+.|+.+.|..++.+....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhhCCHHHHHHHHHHhhhH
Confidence 4678888888888877653
No 268
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.83 E-value=0.24 Score=44.04 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=73.9
Q ss_pred HHHHHcccC--CCChhhHHHHHHHHHHc-----CChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCC-----------
Q 008276 83 TRHVFDEIT--NKNVVFFNVLIRSYVNN-----YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN----------- 144 (571)
Q Consensus 83 A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~----------- 144 (571)
....|...+ +++-.+|-..+..+... +..+=.-..++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 45666777777666433 345555566777888888888888888887764432
Q ss_pred -----ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH-HHHHHHHccCC
Q 008276 145 -----SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL-KEARRVLNDMP 192 (571)
Q Consensus 145 -----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 192 (571)
+-+-+..++++|...|+-||..+-..|++++.+.+-. .+..++.-.|+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 3356778888998889989988888888888877653 23334433443
No 269
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.78 E-value=0.36 Score=37.48 Aligned_cols=88 Identities=19% Similarity=0.044 Sum_probs=54.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCC
Q 008276 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI--EHFACLVDLLGRAGK 451 (571)
Q Consensus 374 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 451 (571)
++...|+.+.|++.|.+.+.. .+-....|+.-.+++.-.|+.++|+.-+++..+..|-.... ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456677777777777777763 23355577777777777777777777777776643322111 223333445666677
Q ss_pred HHHHHHHHHhC
Q 008276 452 VEEAYDLIKQM 462 (571)
Q Consensus 452 ~~~A~~~~~~~ 462 (571)
.+.|..-|+..
T Consensus 131 dd~AR~DFe~A 141 (175)
T KOG4555|consen 131 DDAARADFEAA 141 (175)
T ss_pred hHHHHHhHHHH
Confidence 77777666654
No 270
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.60 E-value=1.3 Score=44.44 Aligned_cols=158 Identities=15% Similarity=0.136 Sum_probs=92.2
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHcCCCCCh------hHHHHHHHHHH----hcCCHHHHHHHHhhCCC--CChhHHHH
Q 008276 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNL------RLENALVDMYA----KCGSLTEARTVFDQMRC--QDVVSWTS 370 (571)
Q Consensus 303 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~----~~~~~~~a~~~~~~~~~--~~~~~~~~ 370 (571)
..++....-.||-+.+.+.+....+.+--..+ -.|...+..++ .....+.|.++++.+.+ |+...|..
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 34455555566777777766665543211111 12222222222 24467778888888776 76665544
Q ss_pred H-HHHHHhcCChHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHH-HHHH
Q 008276 371 M-ISAYGMSGQGYDAVALFSKMLMSG--L-CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC-LVDL 445 (571)
Q Consensus 371 l-i~~~~~~~~~~~a~~~~~~m~~~g--~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~ 445 (571)
. .+.+...|+.++|++.|++..... . +.....+.-+.-.+....+|++|...|..+.+.... +..+|.- ..-+
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--Ska~Y~Y~~a~c 349 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW--SKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc--HHHHHHHHHHHH
Confidence 3 345667788888888888765411 1 112335555666677788888888888888875333 2333322 2334
Q ss_pred HHhcCCH-------HHHHHHHHhC
Q 008276 446 LGRAGKV-------EEAYDLIKQM 462 (571)
Q Consensus 446 ~~~~g~~-------~~A~~~~~~~ 462 (571)
+...|+. ++|.++|.+.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHH
Confidence 4556666 7788888776
No 271
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.49 E-value=13 Score=43.79 Aligned_cols=311 Identities=11% Similarity=-0.002 Sum_probs=170.3
Q ss_pred HHHHHHHhCCCHHHHHHHHccCC----CC--CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC
Q 008276 170 GLVAMYGKCGCLKEARRVLNDMP----SK--DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243 (571)
Q Consensus 170 ~l~~~~~~~g~~~~A~~~~~~~~----~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 243 (571)
.+..+-.+++.+.+|...++.-. +. ....|-.+...|...+++|...-+...-.. .|
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~-------------- 1450 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP-------------- 1450 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc--------------
Confidence 34455667777888877777632 11 112334444477777777776666553111 11
Q ss_pred CCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHH
Q 008276 244 TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR 323 (571)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 323 (571)
....-|......|++..|...|+.+...+ ++...+++.++......+.++...-..+
T Consensus 1451 ----------------------sl~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~d 1507 (2382)
T KOG0890|consen 1451 ----------------------SLYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLD 1507 (2382)
T ss_pred ----------------------cHHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhc
Confidence 12233445567889999999999998764 3446778888888777788777776555
Q ss_pred HHHHcCCCCChhHHH-HHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHH--HHHHHhcC--ChHHHHHHHHHHHHCCCCC
Q 008276 324 YVERKKLQPNLRLEN-ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM--ISAYGMSG--QGYDAVALFSKMLMSGLCP 398 (571)
Q Consensus 324 ~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l--i~~~~~~~--~~~~a~~~~~~m~~~g~~p 398 (571)
...... .+....++ .=+.+--+.++++.....+. ..+..+|... +....+.. +.-.-.+..+.+++.-+.|
T Consensus 1508 g~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~ 1583 (2382)
T KOG0890|consen 1508 GLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN 1583 (2382)
T ss_pred chhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh
Confidence 544332 23333333 33444467777777777766 4455555544 22222222 2111222333333321111
Q ss_pred --------CH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 008276 399 --------DS-IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI------EHFACLVDLLGRAGKVEEAYDLIKQM- 462 (571)
Q Consensus 399 --------~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~- 462 (571)
+. ..|..++....-. +.+.-.+.+. +..++. ..|..-++.-....+..+-+-.+++.
T Consensus 1584 lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~------~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~ 1656 (2382)
T KOG0890|consen 1584 LSACSIEGSYVRSYEILMKLHLLL-ELENSIEELK------KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSM 1656 (2382)
T ss_pred HHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhh------ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHH
Confidence 10 1333333322211 1111111111 222222 22322222211111222221112211
Q ss_pred ---CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008276 463 ---PMEP-----NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533 (571)
Q Consensus 463 ---~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 533 (571)
..+| -..+|....+.....|.++.|...+-.+.+..+ +.++.-.++.+.+.|+...|..++++..+...
T Consensus 1657 l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1657 LDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 1122 345788888999999999999999888888774 56788999999999999999999999886543
No 272
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.30 E-value=0.68 Score=36.12 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcC
Q 008276 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329 (571)
Q Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 329 (571)
...-++.+...|+-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++..++.++-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344555566666666666666655422 5555666666666666666666666666666555
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.18 E-value=0.29 Score=44.36 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
+..++..+...|+++.+...+++.+..+|-+...|..++.+|.+.|+...|++.++++.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 33444444455555555555555555555555555555555555555555555555544
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.18 E-value=1.9 Score=35.58 Aligned_cols=129 Identities=13% Similarity=0.138 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHH-HH--HH
Q 008276 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE-HF--AC 441 (571)
Q Consensus 366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~--~~ 441 (571)
..|..-++ +.+.+..++|+.-|..+.+.|...=+. ............|+-..|...|+++-.. .-.|... -. .-
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHH
Confidence 34444443 467788899999999988876542221 2222334456788889999999988765 2233321 11 11
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 442 LVDLLGRAGKVEEAYDLIKQMP--MEP-NERIWGSLVAACCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (571)
-...+...|.+++...-.+.+. -.| ....-..|.-+-.+.|++..|.+.|+.+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2334567888888888887772 222 334445666677788888888888888776
No 275
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.16 E-value=3.4 Score=35.58 Aligned_cols=159 Identities=14% Similarity=0.098 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 008276 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV 443 (571)
Q Consensus 365 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 443 (571)
+..||-|.-.+...|+++.|.+.|+...+ ..|... +...-.-++...|++.-|.+-+...-+.....|-...|.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34677777777788888888888888877 344322 222222234456788877766555544312222223332222
Q ss_pred HHHHhcCCHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------chhHHHHHHHHHhc
Q 008276 444 DLLGRAGKVEEAYDLIK-QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ-------SGYYVLLSNIYAKA 515 (571)
Q Consensus 444 ~~~~~~g~~~~A~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 515 (571)
.+.-+..+|..-+. +.. ..|..-|...+-.+.- |+..+ +.+++++.....++ ..+|+-+++-+...
T Consensus 177 ---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 23345666654433 331 2233444443333321 22111 22333333322222 34677888888888
Q ss_pred CCHHHHHHHHHHHHhC
Q 008276 516 GRWGDVKRVRKFMNSK 531 (571)
Q Consensus 516 g~~~~A~~~~~~m~~~ 531 (571)
|..++|..+|+-....
T Consensus 251 G~~~~A~~LfKLaian 266 (297)
T COG4785 251 GDLDEATALFKLAVAN 266 (297)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 8888888888766543
No 276
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.89 E-value=2.2 Score=42.21 Aligned_cols=161 Identities=16% Similarity=0.043 Sum_probs=99.1
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 008276 272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT 351 (571)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (571)
....-.++++++....+.-.-.. ..+..-...++.-+.+.|-.+.|.++-.. .. .-.+...+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHH
Confidence 44556778888777665211100 11244466777777788888887776432 21 2334567789999
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 008276 352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431 (571)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 431 (571)
.|.++.++.. +...|..|.+.....|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+..... +
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~ 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c
Confidence 9988877765 666899999999999999999988887544 556666677788887777777666553 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 008276 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463 (571)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (571)
+ ++....++.-.|+.++..+++.+.+
T Consensus 404 ---~---~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 ---D---INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred ---C---HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 1 3444555566788888888877764
No 277
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.70 E-value=13 Score=40.68 Aligned_cols=139 Identities=17% Similarity=0.106 Sum_probs=83.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHH
Q 008276 339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE 418 (571)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 418 (571)
-.++.--+.|-+.+|..++..-.+.--..|.+..+.+.....+++|.-.|+..-+ ..-.+.+|..+|+|.+
T Consensus 913 e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~ 983 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWRE 983 (1265)
T ss_pred HHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHH
Confidence 3344444555666666555433322233455556666677888888877765433 2334677788889999
Q ss_pred HHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 419 GRYYFKIMTEQYKLVPRI--EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF 495 (571)
Q Consensus 419 a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 495 (571)
|..+..++.. .-+. .+-..|+..+...++.-+|-++..+...+|.. .+..+++...+++|+.+.....
T Consensus 984 ~l~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 984 ALSLAAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 8888877743 1222 22356777788888888888888777333322 2334455556666666555443
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.50 E-value=0.17 Score=29.58 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 504 YYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 504 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888744
No 279
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.33 E-value=7 Score=36.54 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=71.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-------C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHHHH-
Q 008276 338 NALVDMYAKCGSLTEARTVFDQMRC-------Q--DVVSWTSMISAYGMSGQGYDAVALFSKMLM----SGLCPDSIAF- 403 (571)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~~~- 403 (571)
..+..++...+.++++.+.|+...+ + ....+-.|...|.+..|+++|.-+..+..+ .++.--...|
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3455566666677777777765542 1 233567777777777888877766655443 2222111122
Q ss_pred ----HHHHHHhhcCCCHHHHHHHHHHHHHhc---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276 404 ----VSVLSACSHAGLLEEGRYYFKIMTEQY---KLVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 404 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
..+.-++...|.+-.|.+.-++..+.- |..+ .......+.+.|...|+.|.|..-++..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 223345566677777776666654421 2222 1234456777787888877776666544
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.22 E-value=0.19 Score=29.43 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 008276 470 IWGSLVAACCLYSNMDIGILAADHIFHL 497 (571)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 497 (571)
+|..|...|.+.|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888899999999999885543
No 281
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.18 E-value=2.5 Score=39.26 Aligned_cols=94 Identities=10% Similarity=0.185 Sum_probs=52.6
Q ss_pred HHHHHHHHhhCCC-------CChhHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhcCCC-
Q 008276 350 LTEARTVFDQMRC-------QDVVSWTSMISAYGMSGQ----GYDAVALFSKMLMSGLCPDSI--AFVSVLSACSHAGL- 415 (571)
Q Consensus 350 ~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~- 415 (571)
..+|..+|+.|.+ ++..++..++.. ..++ .+.++.+|+.+.+.|+..+.. ....++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3445556665553 233444444433 2222 356677888888878776544 33333333322222
Q ss_pred -HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008276 416 -LEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446 (571)
Q Consensus 416 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (571)
...+.++++.+.+. ++++....|..+.-..
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 34677788888776 8888777766554433
No 282
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.17 E-value=0.21 Score=28.60 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276 470 IWGSLVAACCLYSNMDIGILAADHIFHLAPN 500 (571)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 500 (571)
+|..+...+...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666666777777777777777776663
No 283
>PRK09687 putative lyase; Provisional
Probab=93.09 E-value=7.3 Score=36.04 Aligned_cols=75 Identities=13% Similarity=0.028 Sum_probs=39.8
Q ss_pred CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 008276 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340 (571)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 340 (571)
.++..+-...+.++.+.|+ ..|+..+-+..+.+. .....+.++...|+. ++...+..+.+.. +|..+-...
T Consensus 203 D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a 273 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKA 273 (280)
T ss_pred CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHH
Confidence 3444555555666666665 445555555554321 233556666677764 4666666666532 355554444
Q ss_pred HHHH
Q 008276 341 VDMY 344 (571)
Q Consensus 341 ~~~~ 344 (571)
+.++
T Consensus 274 ~~a~ 277 (280)
T PRK09687 274 IDKL 277 (280)
T ss_pred HHHH
Confidence 4444
No 284
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.06 E-value=2.3 Score=36.05 Aligned_cols=89 Identities=18% Similarity=0.113 Sum_probs=48.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHH
Q 008276 374 AYGMSGQGYDAVALFSKMLMSGLCPDS-----IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLG 447 (571)
Q Consensus 374 ~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 447 (571)
-+...|++++|..-|...++. +++.. ..|..-..++.+.+.++.|+.-..+.++. .|+. ....--..+|.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRAEAYE 179 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHHHHHH
Confidence 455667777777777777664 33322 13333444556666666666666555542 2322 22223345666
Q ss_pred hcCCHHHHHHHHHhC-CCCC
Q 008276 448 RAGKVEEAYDLIKQM-PMEP 466 (571)
Q Consensus 448 ~~g~~~~A~~~~~~~-~~~p 466 (571)
+...+++|++-|+++ ...|
T Consensus 180 k~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDP 199 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCc
Confidence 666677777666666 3344
No 285
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.03 E-value=5.7 Score=38.29 Aligned_cols=69 Identities=9% Similarity=0.139 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008276 466 PNERIWGSLVAACCLYSNMDIGILAADHIFHLA----PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534 (571)
Q Consensus 466 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 534 (571)
....+|..++..+.+.|.++.|...+.++...+ +..+.+...-+..+...|+..+|...+++..+..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 356688999999999999999999999998865 225667788889999999999999999988874433
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.92 E-value=0.94 Score=37.05 Aligned_cols=95 Identities=17% Similarity=0.116 Sum_probs=64.9
Q ss_pred HHHHHHHHHH---HhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 008276 437 EHFACLVDLL---GRAGKVEEAYDLIKQM-PMEPNERIWGSL-VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511 (571)
Q Consensus 437 ~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 511 (571)
.+.+.|++.+ .+.++.+++..++..+ -.+|.......+ ...+...|++.+|+.+++.+.+..|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3444555543 5678999999999988 456654444332 3346689999999999999888888777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 008276 512 YAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~~~ 532 (571)
+...|+. +=..+-+++.+.+
T Consensus 88 L~~~~D~-~Wr~~A~evle~~ 107 (160)
T PF09613_consen 88 LYALGDP-SWRRYADEVLESG 107 (160)
T ss_pred HHHcCCh-HHHHHHHHHHhcC
Confidence 7666653 3344455566665
No 287
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.79 E-value=8.1 Score=35.79 Aligned_cols=18 Identities=11% Similarity=-0.027 Sum_probs=13.3
Q ss_pred HHcCCchHHHHHHHHHHH
Q 008276 275 ANNSMPAEAVDLYLQMEV 292 (571)
Q Consensus 275 ~~~g~~~~A~~~~~~m~~ 292 (571)
.+.|+.+.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 356788888888877754
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.72 E-value=0.89 Score=36.50 Aligned_cols=84 Identities=12% Similarity=0.016 Sum_probs=51.9
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 008276 448 RAGKVEEAYDLIKQM-PMEPNERIWGSL-VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVR 525 (571)
Q Consensus 448 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 525 (571)
..++.+++..+++.+ -+.|+..-...+ ...+...|++++|+.+++.+.+..+..+..-..++.++.-.|+.+ =..+-
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~-Wr~~A 100 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE-WHVHA 100 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH-HHHHH
Confidence 477888888888877 444543322222 334567888888888888888777766656666666666666532 22334
Q ss_pred HHHHhCC
Q 008276 526 KFMNSKG 532 (571)
Q Consensus 526 ~~m~~~~ 532 (571)
.++.+.+
T Consensus 101 ~~~le~~ 107 (153)
T TIGR02561 101 DEVLARD 107 (153)
T ss_pred HHHHHhC
Confidence 4444454
No 289
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.68 E-value=0.26 Score=30.42 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=27.9
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
+.++..++.+|.+.|++++|.+++++..+..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3578899999999999999999999998765
No 290
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.57 E-value=0.52 Score=42.65 Aligned_cols=102 Identities=14% Similarity=0.110 Sum_probs=79.1
Q ss_pred hhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC-C------ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 008276 57 NQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN-K------NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129 (571)
Q Consensus 57 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 129 (571)
..|.+.+..+...++..-....+++++...+-.+.. | +... ...++.+ -.-++++++.++..-.+.|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccc
Confidence 456777778888888888888899999888766654 2 2211 1223333 33478899999999999999999
Q ss_pred cccHHHHHHHhhcCCChHHHHHHHHHHHHhC
Q 008276 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160 (571)
Q Consensus 130 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 160 (571)
.++++.+|+.+.+.+++..|.++.-+|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888765
No 291
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.12 E-value=2.5 Score=35.87 Aligned_cols=96 Identities=13% Similarity=0.031 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHH--HH
Q 008276 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI--AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA--CL 442 (571)
Q Consensus 367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 442 (571)
.+..+...|++.|+.+.|.+.|.++.+.-..+... .+..+++.....+++..+...+.++........|...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 46677888888899999999998888865555443 566677788888888888888877765411111211111 11
Q ss_pred H--HHHHhcCCHHHHHHHHHhC
Q 008276 443 V--DLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 443 ~--~~~~~~g~~~~A~~~~~~~ 462 (571)
. -.+...+++.+|.+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 1 1223467888888887776
No 292
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.11 E-value=18 Score=38.08 Aligned_cols=144 Identities=10% Similarity=-0.008 Sum_probs=78.9
Q ss_pred HHHHHhhcCCChHHHHHHHcccCCCChh---hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCC
Q 008276 69 KLMRTYGACGQMVDTRHVFDEITNKNVV---FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS 145 (571)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 145 (571)
.-+..+.+..-++.|..+-+.-..+... ....-..-+.+.|++++|..-|-+-... +.| ..+|.-+.....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHH
Confidence 3445555556666666655443322111 1222334456678888887776655432 222 224555555566
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCc-hhHHHHHHHHHhCCCchHHHHHH
Q 008276 146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDV-VTWNSMVAGYAQNGRFDEALDVC 219 (571)
Q Consensus 146 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~ 219 (571)
...-..+++.+.+.|+. +...-..|+.+|.+.++.+.-.++.+...+-.. .-....+..+.+.+-.++|..+-
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHH
Confidence 66666777777777754 333345677888888887777777766552111 11334445555555555554443
No 293
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.72 E-value=3 Score=40.35 Aligned_cols=127 Identities=15% Similarity=0.094 Sum_probs=63.9
Q ss_pred HHhcCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 008276 375 YGMSGQGYDAVALFSK-MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453 (571)
Q Consensus 375 ~~~~~~~~~a~~~~~~-m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (571)
-...|+...|-+-+.. ++...-.|+...... ..+...|+++.+...+..... -+.....+..++++.....|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHH
Confidence 3345565555443333 333223333333222 234556666666666655543 23334455566666666666666
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 008276 454 EAYDLIKQM-PME-PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505 (571)
Q Consensus 454 ~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 505 (571)
+|...-+.| +.+ .++.............|-++++...++++..++|+...-|
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 666666655 211 1333333333334445666666666666666665443333
No 294
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.70 E-value=0.49 Score=43.33 Aligned_cols=100 Identities=10% Similarity=0.006 Sum_probs=71.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 008276 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYS 482 (571)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 482 (571)
-..-|.++|.+++|+.+|..... ..| ++.++..-..+|.+..++..|+.-.... .+.- =...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35568899999999999998774 345 7788888899999999998887766554 2111 1123333344444578
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHH
Q 008276 483 NMDIGILAADHIFHLAPNQSGYYVLL 508 (571)
Q Consensus 483 ~~~~A~~~~~~~~~~~p~~~~~~~~l 508 (571)
+..+|.+-++.++++.|.+...--.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 88899999999999999865544333
No 295
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.70 E-value=7.5 Score=33.02 Aligned_cols=87 Identities=13% Similarity=-0.000 Sum_probs=43.2
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhc
Q 008276 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF-----ACLVDLLGRAGKVEEAYDLIKQMPME-PNERIWGSLVAACCLY 481 (571)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~ 481 (571)
..+...+++++|...++..... +.| ..+ --|.+.....|.+|+|+..++...-+ -.......-...+...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~D-e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~k 172 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKD-ENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHc
Confidence 3455566666666666655432 112 112 22344455566666666666655211 1122222233445566
Q ss_pred CCHHHHHHHHHHHHhhC
Q 008276 482 SNMDIGILAADHIFHLA 498 (571)
Q Consensus 482 g~~~~A~~~~~~~~~~~ 498 (571)
|+-++|...|+++++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 66666666666666554
No 296
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.32 E-value=7.6 Score=32.34 Aligned_cols=134 Identities=9% Similarity=0.110 Sum_probs=68.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHhC
Q 008276 385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG--KVEEAYDLIKQM 462 (571)
Q Consensus 385 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~ 462 (571)
.++++.+.+.+++|+...+..+++.+.+.|.+.....+++. ++-+|.......+-.+.... -..-|++++.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 44555666667777777777777777777776554444322 33344433322222222111 134455555555
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 463 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
+. .+..++..+...|++-+|+++.+.....+... ...+.++-.+.++...-..+++-..++
T Consensus 89 ~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~---~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 89 GT-----AYEEIIEVLLSKGQVLEALRYARQYHKVDSVP---ARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCC---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 31 24445566667777777777776653332111 123334444455544444444444443
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.17 E-value=0.47 Score=27.02 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 503 GYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 503 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
.+|..++.++...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 47889999999999999999999988754
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.41 E-value=4.1 Score=33.47 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=53.8
Q ss_pred HHHHHHHHH---hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 008276 401 IAFVSVLSA---CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVA 476 (571)
Q Consensus 401 ~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 476 (571)
.+...|+.. -...++.+++..+++.+.--..-.+...++ -...+...|++.+|+.+|+++ ...|....-..|+.
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~--~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLF--DGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHH--HHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344444443 457789999999999997532222333333 345568899999999999999 43455555556666
Q ss_pred HHHh-cCCHH
Q 008276 477 ACCL-YSNMD 485 (571)
Q Consensus 477 ~~~~-~g~~~ 485 (571)
.|.. .||.+
T Consensus 86 ~CL~~~~D~~ 95 (160)
T PF09613_consen 86 LCLYALGDPS 95 (160)
T ss_pred HHHHHcCChH
Confidence 6554 44443
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.41 E-value=0.68 Score=26.41 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008276 367 SWTSMISAYGMSGQGYDAVALFSKMLM 393 (571)
Q Consensus 367 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 393 (571)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666666777777777666666
No 300
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.35 E-value=0.67 Score=26.10 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=11.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCC
Q 008276 476 AACCLYSNMDIGILAADHIFHLAP 499 (571)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~~~~~p 499 (571)
.++.+.|++++|...|+++++..|
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHccCHHHHHHHHHHHHHHCc
Confidence 334444445555555554444444
No 301
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.12 E-value=3.4 Score=35.09 Aligned_cols=63 Identities=13% Similarity=0.017 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHhccCCchHHHHHHHHHHHH
Q 008276 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA--ISVASVLPACGDLSALLLGRKIHRYVER 327 (571)
Q Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 327 (571)
..+..+...|.+.|+.+.|++.|.++++....+.. ..+..++......+++..+......+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46778899999999999999999999887544443 4456667777778888888877776664
No 302
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.07 E-value=34 Score=37.70 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=40.7
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHH--HHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 008276 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAI--SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348 (571)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (571)
+.+|...|+|.+|+.+-.++.. ..+.. +-..|...+...++.-+|-++..+.... | ...+..|++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHh
Confidence 4556666677777666665532 11211 1134455555666666666655544422 1 12334455555
Q ss_pred CHHHHHHHHhhCC
Q 008276 349 SLTEARTVFDQMR 361 (571)
Q Consensus 349 ~~~~a~~~~~~~~ 361 (571)
.+++|..+-....
T Consensus 1041 ~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1041 EWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHhcc
Confidence 6666666554444
No 303
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.92 E-value=0.53 Score=25.04 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHH
Q 008276 503 GYYVLLSNIYAKAGRWGDVKRVRK 526 (571)
Q Consensus 503 ~~~~~l~~~~~~~g~~~~A~~~~~ 526 (571)
.+...++.++...|+.++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677788888888888887765
No 304
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.67 E-value=13 Score=32.52 Aligned_cols=20 Identities=5% Similarity=-0.001 Sum_probs=12.9
Q ss_pred HhcCCHHHHHHHHHHHHhhC
Q 008276 479 CLYSNMDIGILAADHIFHLA 498 (571)
Q Consensus 479 ~~~g~~~~A~~~~~~~~~~~ 498 (571)
...+++.+|+.+|+++....
T Consensus 165 a~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34666777777777666544
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.66 E-value=0.86 Score=27.39 Aligned_cols=27 Identities=7% Similarity=0.048 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 470 IWGSLVAACCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (571)
+++.+...|...|++++|+.+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344455555555555555555555444
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.27 E-value=1.4 Score=40.51 Aligned_cols=93 Identities=12% Similarity=0.123 Sum_probs=62.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 008276 372 ISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450 (571)
Q Consensus 372 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (571)
..-|.++|.+++|+..|...+. +.| |..++..-..+|.+...+..|..-........ ..-...|.--+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence 3469999999999999999888 566 88899889999999999998887776665420 011122333333333445
Q ss_pred CHHHHHHHHHhC-CCCCCH
Q 008276 451 KVEEAYDLIKQM-PMEPNE 468 (571)
Q Consensus 451 ~~~~A~~~~~~~-~~~p~~ 468 (571)
...+|.+-++.. .++|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 555555555544 566763
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.23 E-value=9 Score=32.85 Aligned_cols=76 Identities=14% Similarity=0.035 Sum_probs=54.6
Q ss_pred HhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCCchhHHHHHHHHHhcCCHHH
Q 008276 447 GRAGKVEEAYDLIKQMPMEP--NERIWGSLVAACCLYSNMDIGILAADHIFHLA----PNQSGYYVLLSNIYAKAGRWGD 520 (571)
Q Consensus 447 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~ 520 (571)
.....-++|.+.|-++.-.| +....-..+..|....|.++++.++-+++++. ..|+.++..|+..+.+.|+++.
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 33434467777777772232 33344444555666889999999999999865 3368899999999999999998
Q ss_pred HH
Q 008276 521 VK 522 (571)
Q Consensus 521 A~ 522 (571)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 308
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.20 E-value=12 Score=31.17 Aligned_cols=126 Identities=14% Similarity=0.081 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHH-----HHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHH--
Q 008276 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI-----SAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSV-- 406 (571)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l-- 406 (571)
..|..-++ +.+.++.++|..-|..+.+.+...|-.|. ....+.|+...|...|.+.-.....|-.. -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444333 35567777777777777765544444433 23556777777787777776643333222 11111
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276 407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
.-.+...|.++....-.+-+... +.+.....-..|.-+-.+.|++.+|.+.|..+
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 12345677777777776666543 43444455566666777778888888777776
No 309
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.17 E-value=5.7 Score=33.24 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=38.3
Q ss_pred CCCCC-HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 463 PMEPN-ERIWGSLVAACCLYS-----------NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 463 ~~~p~-~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
.++|+ ..++..+..++...+ -+++|...|+++...+|.+......|-.+ ..|-++..++..
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~ 135 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHK 135 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHH
Confidence 45564 345555655554322 25677788888888999887666666443 457777777766
Q ss_pred CCCCC
Q 008276 531 KGIKK 535 (571)
Q Consensus 531 ~~~~~ 535 (571)
.+...
T Consensus 136 ~~~~~ 140 (186)
T PF06552_consen 136 QGLGQ 140 (186)
T ss_dssp SSS--
T ss_pred HHhhh
Confidence 65443
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.12 E-value=3.3 Score=30.39 Aligned_cols=63 Identities=11% Similarity=0.260 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444 (571)
Q Consensus 380 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (571)
+.-++.+-++.+....+.|++......+++|.+.+++..|.++++.++.+.+. +...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44566777777778888999999999999999999999999999988764232 3445555544
No 311
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.09 E-value=15 Score=32.41 Aligned_cols=89 Identities=11% Similarity=0.057 Sum_probs=47.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHH
Q 008276 371 MISAYGMSGQGYDAVALFSKMLM----SGLCPDS-IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL--VPRIEHFACLV 443 (571)
Q Consensus 371 li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~ 443 (571)
.-..+.+..++++|-..+.+-.. ..--++. ..|...|-.+....++..|.++++.-.+..++ +.+..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 33455566666665554433211 1112222 23555555666677888888888774433222 22345666677
Q ss_pred HHHHhcCCHHHHHHHHH
Q 008276 444 DLLGRAGKVEEAYDLIK 460 (571)
Q Consensus 444 ~~~~~~g~~~~A~~~~~ 460 (571)
.+| ..|+.+++..++.
T Consensus 236 ~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHh-ccCCHHHHHHHHc
Confidence 666 4677777766654
No 312
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.79 E-value=17 Score=32.54 Aligned_cols=260 Identities=16% Similarity=0.166 Sum_probs=135.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCC----C---ChhhHHHHHHHHHHcCCchHHHHHHHHHHHC---C
Q 008276 225 LRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN----K---NLVSWNVMIAVYANNSMPAEAVDLYLQMEVH---G 294 (571)
Q Consensus 225 ~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g 294 (571)
.+-.||...-+....+-+-..+ +.+.|..-|.++.+ . ...+...++..+.+.+++++.+..|.+|+.. .
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~-~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKED-EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred cCCCCCcchHhhhhcccccccc-CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 3445665544443332222211 35666666655542 1 2234456788888888888888888887532 1
Q ss_pred C--CCCHHHHHHHHHHhccCCchHHHHHHHHHHHHc-----CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----
Q 008276 295 I--EPNAISVASVLPACGDLSALLLGRKIHRYVERK-----KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC----- 362 (571)
Q Consensus 295 ~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----- 362 (571)
+ .-+....+.++.-.....+.+....+|+.-.+. +-..--.+-..|...|...+++.+..++++++..
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 1 123455666666555566666666665543321 1111122334566677777777777777776642
Q ss_pred ---C-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHh-----hcCCCHHHHHHHHHHH
Q 008276 363 ---Q-------DVVSWTSMISAYGMSGQGYDAVALFSKMLMS-GLCPDSIAFVSVLSAC-----SHAGLLEEGRYYFKIM 426 (571)
Q Consensus 363 ---~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~ 426 (571)
. =...|..=|+.|....+-.+...+|++...- .--|.+... .+++-| .+.|.+++|..-|-++
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHH
Confidence 1 1234666677777777777777777776542 233444443 344444 3567777776544444
Q ss_pred HHhcCCCCCH--H---HHHHHHHHHHhcCCHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008276 427 TEQYKLVPRI--E---HFACLVDLLGRAGKVEEAYDLIKQM---PM--EPNERIWGSLVAACCLYSNMDIGILAAD 492 (571)
Q Consensus 427 ~~~~~~~~~~--~---~~~~l~~~~~~~g~~~~A~~~~~~~---~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 492 (571)
.+.+.-..++ . -|..|..++.+.| ..=|+.- +. .|...+...++.+|.. ++..+-++++.
T Consensus 258 FKNYDEsGspRRttCLKYLVLANMLmkS~-----iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 258 FKNYDESGSPRRTTCLKYLVLANMLMKSG-----INPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred HhcccccCCcchhHHHHHHHHHHHHHHcC-----CCCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 4433222222 1 1333334443322 1122211 22 2344556677777743 45544444444
No 313
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.69 E-value=14 Score=31.44 Aligned_cols=91 Identities=13% Similarity=0.020 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 008276 441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG-----SLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515 (571)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 515 (571)
.+...+..+|++++|+.-++..--.|....+. .|.+.....|++++|+..++.....+= .+.....-++++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 34566778888888888888652233222332 344566778888888888776544321 223455677888888
Q ss_pred CCHHHHHHHHHHHHhCC
Q 008276 516 GRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 516 g~~~~A~~~~~~m~~~~ 532 (571)
|+.++|+.-|++..+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888888887776
No 314
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.28 E-value=0.79 Score=25.78 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 504 YYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 504 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
++..++.++.+.|++++|.++++++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 56788999999999999999999998653
No 315
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.27 E-value=4 Score=39.54 Aligned_cols=151 Identities=12% Similarity=0.076 Sum_probs=92.4
Q ss_pred HHHhcCCHHHHHH-HHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHH
Q 008276 343 MYAKCGSLTEART-VFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG 419 (571)
Q Consensus 343 ~~~~~~~~~~a~~-~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 419 (571)
--...|++..|-+ ++..+.. .++.........+...|+++.+...+...... +.....+...+++...+.|++++|
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3345677766644 4444432 23333333334456789999999998876654 455667888899999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PME-PNERIWGSLVAACCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (571)
...-..|..+ .+ .++.....-.-..-..|-++++.-.|++. .+. |...-|..++..-.-.++...--+.|...++
T Consensus 377 ~s~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~ 453 (831)
T PRK15180 377 LSTAEMMLSN-EI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGNAFSEAFHAGIQ 453 (831)
T ss_pred HHHHHHHhcc-cc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcchHHHHHHhhhh
Confidence 9999888764 33 23333333333344567789999999887 333 3444555555543333343333344444443
No 316
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.23 E-value=14 Score=30.83 Aligned_cols=134 Identities=13% Similarity=0.114 Sum_probs=70.1
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 008276 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230 (571)
Q Consensus 151 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 230 (571)
++++.+.+.+++++...+..+++.+.+.|++.....++..-.-+|.......+-.+. +....+.++=-+|
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDM-------- 84 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDM-------- 84 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHH--------
Confidence 445555566777777777777777777777766666655433333332222221111 1222222222222
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 008276 231 ADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310 (571)
Q Consensus 231 ~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 310 (571)
+.++. ..+..++..+...|++-+|+.+.++..... .++ ...++.+..
T Consensus 85 -------------------------LkRL~----~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~ 131 (167)
T PF07035_consen 85 -------------------------LKRLG----TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAA 131 (167)
T ss_pred -------------------------HHHhh----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHH
Confidence 22221 135566778888899999988887653221 222 234555555
Q ss_pred cCCchHHHHHHHHHHHH
Q 008276 311 DLSALLLGRKIHRYVER 327 (571)
Q Consensus 311 ~~~~~~~a~~~~~~~~~ 327 (571)
+.+|...-..+++-..+
T Consensus 132 ~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 132 NSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555444444444443
No 317
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.19 E-value=4.2 Score=30.21 Aligned_cols=61 Identities=10% Similarity=0.180 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444 (571)
Q Consensus 382 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (571)
-+..+-+..+....+.|++......+++|.+.+++..|.++++.++.+.+.. ...|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 3566667777777889999999999999999999999999999998764433 225655554
No 318
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.19 E-value=5 Score=36.60 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428 (571)
Q Consensus 366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 428 (571)
.++..++..+...|+++.+.+.++++... -+-+...|..++.+|...|+...|+..|+.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34555566666666666666666666663 122555666666666666666666666665543
No 319
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.94 E-value=38 Score=35.55 Aligned_cols=88 Identities=15% Similarity=0.130 Sum_probs=44.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCC-CCChhhHHHHHHHHHH---cC
Q 008276 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD-NKNLVSWNVMIAVYAN---NS 278 (571)
Q Consensus 203 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~---~g 278 (571)
...+.-.|++|.|.+.+-+ ..+...|.+++...+..+.-........ ..++.... .+....+..||..|.+ ..
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~-~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS-APLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc-cceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 3455668999999998876 3345677888888877665443322211 11111111 1222557778888876 35
Q ss_pred CchHHHHHHHHHHHC
Q 008276 279 MPAEAVDLYLQMEVH 293 (571)
Q Consensus 279 ~~~~A~~~~~~m~~~ 293 (571)
+..+|+++|--+...
T Consensus 342 d~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 342 DPREALQYLYLICLF 356 (613)
T ss_dssp -HHHHHHHHHGGGGS
T ss_pred CHHHHHHHHHHHHHc
Confidence 778888888776553
No 320
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.65 E-value=1.4 Score=24.99 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 503 GYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 503 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
.+|..++..|...|++++|...+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999988653
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.56 E-value=1.2 Score=26.71 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 503 GYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 503 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
.++..++.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4688999999999999999999998864
No 322
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.52 E-value=20 Score=37.21 Aligned_cols=185 Identities=18% Similarity=0.226 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHH----------HHHHHHHHhccCCchHHHHHHHHHHHHcCCCCCh
Q 008276 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI----------SVASVLPACGDLSALLLGRKIHRYVERKKLQPNL 334 (571)
Q Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 334 (571)
.+-..++-.|....+++..+++.+.+.. -||.. .|.-.++--.+-|+-+.|..+.-.+.+..-+..+
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3445566666777778888888777765 23321 1222233334456667776666555553222222
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHhh
Q 008276 335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA---FVSVLSACS 411 (571)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~l~~~~~ 411 (571)
. .||-+|++ |+.|- +-..|...+..+.|++.|++..+ +.|+..+ +..|+.+-.
T Consensus 279 D-------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 279 D-------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred c-------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Confidence 1 22333322 11111 11123345556778888888877 6776653 333333221
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008276 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491 (571)
Q Consensus 412 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 491 (571)
+ .++...++-. + | -.|-..+.+.|.++...++|+-. ..+.+-.-.+|+.+|.+..
T Consensus 335 ~--~Fens~Elq~-I----g--------mkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 335 E--HFENSLELQQ-I----G--------MKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAA 389 (1226)
T ss_pred h--hccchHHHHH-H----H--------HHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHH
Confidence 1 1222222111 1 1 12334556778777777776543 2334445567888888888
Q ss_pred HHHHhhCCCC
Q 008276 492 DHIFHLAPNQ 501 (571)
Q Consensus 492 ~~~~~~~p~~ 501 (571)
+.+.++.|+.
T Consensus 390 e~mfKLk~P~ 399 (1226)
T KOG4279|consen 390 EMMFKLKPPV 399 (1226)
T ss_pred HHHhccCCce
Confidence 8888888764
No 323
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.29 E-value=33 Score=34.04 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHH
Q 008276 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISA 374 (571)
Q Consensus 298 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 374 (571)
|.....+++..+.....+.-++.+-.+|...| .+...+..++++|... ..++-..+|+++.+ .|++.-..|...
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 34444445555555555555555555555443 2334444455555444 33444444443332 222222333333
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 008276 375 YGMSGQGYDAVALFSKMLM 393 (571)
Q Consensus 375 ~~~~~~~~~a~~~~~~m~~ 393 (571)
|-+ ++...+..+|.++..
T Consensus 142 yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHH-hchhhHHHHHHHHHH
Confidence 332 444444445544443
No 324
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.14 E-value=43 Score=35.29 Aligned_cols=94 Identities=7% Similarity=-0.173 Sum_probs=50.8
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCchhHHHHHHHHHhcCCHH
Q 008276 443 VDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA---PNQSGYYVLLSNIYAKAGRWG 519 (571)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 519 (571)
+..+...|....|...+..+....+......+.......|.++.++....+....+ -..+..|...+..+.+.-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 44556677777777777666223444445555555566777777777665443311 112234555555555555555
Q ss_pred HHHHHHHHHHhCCCCCC
Q 008276 520 DVKRVRKFMNSKGIKKM 536 (571)
Q Consensus 520 ~A~~~~~~m~~~~~~~~ 536 (571)
.++-+---..|.++.|.
T Consensus 494 ~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 494 QSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 55543333335555443
No 325
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.98 E-value=1.4 Score=27.12 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 506 VLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 506 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
..++.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 467889999999999999999988654
No 326
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.97 E-value=1.6 Score=28.13 Aligned_cols=35 Identities=11% Similarity=0.137 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 008276 473 SLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507 (571)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 507 (571)
.+.-++.+.|++++|.+..+.+++.+|++..+-..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 35567789999999999999999999998765543
No 327
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.97 E-value=44 Score=35.18 Aligned_cols=50 Identities=10% Similarity=-0.123 Sum_probs=28.7
Q ss_pred HHHcCCchHHHHHHHHHHHCCC-CCC-----HHHHHHHHHH--hccCCchHHHHHHHH
Q 008276 274 YANNSMPAEAVDLYLQMEVHGI-EPN-----AISVASVLPA--CGDLSALLLGRKIHR 323 (571)
Q Consensus 274 ~~~~g~~~~A~~~~~~m~~~g~-~~~-----~~~~~~ll~~--~~~~~~~~~a~~~~~ 323 (571)
.+-.+++..|...+..|....- .|+ ...+...+.+ +...|+.+.|...|.
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3456778888888888775321 111 1222222322 345578888888886
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.81 E-value=2.6 Score=36.27 Aligned_cols=62 Identities=13% Similarity=0.184 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276 440 ACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501 (571)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 501 (571)
+.-+..+.+.+.+++|+...+.- .-+| |..+-..++..++-.|++++|..-++-+-.+.|++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34456677788888888776654 5566 55666677788888888888888888888877754
No 329
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.44 E-value=0.99 Score=25.93 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 008276 435 RIEHFACLVDLLGRAGKVEEA 455 (571)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A 455 (571)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344455555555555555544
No 330
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.19 E-value=3.3 Score=37.34 Aligned_cols=60 Identities=13% Similarity=-0.019 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
++.....|..+|.+.+|.++-++++.++|-+...+..+...|...|+--.|...++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 445566788999999999999999999999999999999999999998888888888763
No 331
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.14 E-value=3.8 Score=30.10 Aligned_cols=51 Identities=10% Similarity=0.017 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhcCC
Q 008276 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN--QSGYYVLLSNIYAKAGR 517 (571)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 517 (571)
|....-.+...+...|++++|++.+-.+++.++. +...-..++.++.-.|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3344444445555555555555555555554432 23444455555444444
No 332
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.00 E-value=43 Score=34.70 Aligned_cols=151 Identities=11% Similarity=0.065 Sum_probs=70.4
Q ss_pred hcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHhhcC----C-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276 377 MSGQGYDAVALFSKMLM-------SGLCPDSIAFVSVLSACSHA----G-LLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444 (571)
Q Consensus 377 ~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~----~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (571)
..++.+.|+.+|+.+.+ .| +......+..+|.+. . +.+.|..++.+..+. + .|+...+...+.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHHHH
Confidence 33455555555555444 33 222333444444442 2 456667776666553 2 233332222222
Q ss_pred HHHh-cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc-CCH
Q 008276 445 LLGR-AGKVEEAYDLIKQMPMEPNERIWGSLVAACC----LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA-GRW 518 (571)
Q Consensus 445 ~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~ 518 (571)
.... ..+...|.++|......-....+-.+...|. ...+.+.|...++++.+.++ +.+...+...+... +++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~ 413 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRY 413 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccc
Confidence 1111 1345667777766621222222211222111 34467777777777777763 22233333322221 677
Q ss_pred HHHHHHHHHHHhCCCC
Q 008276 519 GDVKRVRKFMNSKGIK 534 (571)
Q Consensus 519 ~~A~~~~~~m~~~~~~ 534 (571)
+.+.-.+..+.+.|.+
T Consensus 414 ~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 414 DTALALYLYLAELGYE 429 (552)
T ss_pred cHHHHHHHHHHHhhhh
Confidence 7777666666666554
No 333
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.00 E-value=23 Score=35.79 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276 438 HFACLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
-|..|.++..+.|++..|.+.|.+.
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhh
Confidence 3444555555555555554444443
No 334
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.88 E-value=0.5 Score=38.62 Aligned_cols=86 Identities=15% Similarity=0.104 Sum_probs=63.2
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchH
Q 008276 135 CVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE 214 (571)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 214 (571)
.++..+.+.+.+.....+++.+...+...+...++.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 36777778888888888899888877667788889999999999888888888874433 333456677777777777
Q ss_pred HHHHHHHHH
Q 008276 215 ALDVCREME 223 (571)
Q Consensus 215 a~~~~~~m~ 223 (571)
+.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776653
No 335
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=85.83 E-value=12 Score=27.73 Aligned_cols=87 Identities=11% Similarity=-0.014 Sum_probs=60.4
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 008276 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223 (571)
Q Consensus 144 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 223 (571)
...++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|... +.|..++...-+.+|.
T Consensus 19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLA 95 (115)
T ss_pred hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 3467777777777665422 222222334567889999999999999988999988776554 6777777777777777
Q ss_pred HCCCCCCHHHH
Q 008276 224 SLRIKPDADTM 234 (571)
Q Consensus 224 ~~g~~p~~~t~ 234 (571)
.+| .|....|
T Consensus 96 ~sg-~p~lq~F 105 (115)
T TIGR02508 96 ASG-DPRLQTF 105 (115)
T ss_pred hCC-CHHHHHH
Confidence 765 4444444
No 336
>PRK10941 hypothetical protein; Provisional
Probab=85.73 E-value=5.8 Score=36.25 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
.+.+-.+|.+.++++.|+...+.++.+.|+++.-+.-.+-+|.+.|.+..|..=++...+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 45555667778888888888888888888888777777778888888888887777776554
No 337
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.47 E-value=5.7 Score=34.94 Aligned_cols=57 Identities=9% Similarity=-0.091 Sum_probs=44.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008276 477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533 (571)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 533 (571)
++...|++-++++.-..++...|.+..+|+.-+.+....=+.++|..=|....+...
T Consensus 239 C~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 239 CLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 445677888888888888888888888888888888888788888877777765543
No 338
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.20 E-value=28 Score=31.27 Aligned_cols=126 Identities=10% Similarity=-0.007 Sum_probs=74.3
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHHHH----C-CCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCC----CCC
Q 008276 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEV----H-GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL----QPN 333 (571)
Q Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~ 333 (571)
+..+.|++++.-....+.+.-..+|+.-++ . +-+.--.|-..+...|...+.+....++++++....- ..|
T Consensus 104 SEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD 183 (440)
T KOG1464|consen 104 SEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD 183 (440)
T ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence 345667777766666666666666554322 1 1111123445667778888899999999998875321 111
Q ss_pred -------hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHH----HHHHhcCChHHHHHHH
Q 008276 334 -------LRLENALVDMYAKCGSLTEARTVFDQMRC-----QDVVSWTSMI----SAYGMSGQGYDAVALF 388 (571)
Q Consensus 334 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li----~~~~~~~~~~~a~~~~ 388 (571)
..+|..-++.|....+-.+-..++++... |.+.....+- ....+.|++++|..-|
T Consensus 184 ~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 184 QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHH
Confidence 34566667777777777777777776542 4443332221 1245677888776433
No 339
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.96 E-value=2.4 Score=35.43 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC-----------HHHHHHHHHHHHhC
Q 008276 484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR-----------WGDVKRVRKFMNSK 531 (571)
Q Consensus 484 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~ 531 (571)
+++|+.-|++++.++|+...++..++.+|...+. +++|.++|++..+.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc
Confidence 5577888888889999999999999999987653 45555555555443
No 340
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.63 E-value=56 Score=34.33 Aligned_cols=86 Identities=14% Similarity=0.016 Sum_probs=35.6
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHh---
Q 008276 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK-LQPNLRLENALVDMYAK--- 346 (571)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 346 (571)
...+.-.|+++.|++++.. ..+...+...+...+.-+.-..-.+... ..+.... -.|..--+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3455567788888877765 2233455555555554443322211111 2222111 01111345566666665
Q ss_pred cCCHHHHHHHHhhCC
Q 008276 347 CGSLTEARTVFDQMR 361 (571)
Q Consensus 347 ~~~~~~a~~~~~~~~ 361 (571)
..++..|.++|--+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 346777777766554
No 341
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.60 E-value=15 Score=29.80 Aligned_cols=78 Identities=10% Similarity=0.213 Sum_probs=54.2
Q ss_pred HHHHHHHHhhcCCChHHHHHHHcccCC---------CChhhHHHHHHHHHHcCC-hhHHHHHHHHHHhCCCCCCcccHHH
Q 008276 66 IGLKLMRTYGACGQMVDTRHVFDEITN---------KNVVFFNVLIRSYVNNYL-YYDALHVYKNMSVHGFDPDCYTYPC 135 (571)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~ 135 (571)
..|.++.....-+++.....+++.+.. .+..+|+.++.+..+... ---+..+|..|.+.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 447777777777778877777776642 245567777777766555 3346677777777777777777877
Q ss_pred HHHHhhcC
Q 008276 136 VLKACSGS 143 (571)
Q Consensus 136 li~~~~~~ 143 (571)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88776654
No 342
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.55 E-value=2.3 Score=23.04 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 008276 473 SLVAACCLYSNMDIGILAADHIFHLAP 499 (571)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~~~~p 499 (571)
.+...+...|+++.|...+++.++..|
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 334444444444444444444444433
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.48 E-value=27 Score=30.44 Aligned_cols=59 Identities=15% Similarity=0.020 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 008276 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT 427 (571)
Q Consensus 368 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 427 (571)
.+.-++.+.+.+...+++...++-++. -+.|..+-..+++.++-.|+|++|..-++..-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka-kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA-KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc-CCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 344556666777777777777766653 12244455666777777777777777666554
No 344
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.40 E-value=1e+02 Score=37.14 Aligned_cols=162 Identities=10% Similarity=-0.009 Sum_probs=98.4
Q ss_pred hHHHHHHhhCCChHHHHHHHHHHHHhhcCC-C-ChhHHHHHHHHhhcCCChHHHHHHHc-ccCCCChhhHHHHHHHHHHc
Q 008276 32 DACNDILDKYPDIKTLKKLHAQIIINQHLH-S-NPSIGLKLMRTYGACGQMVDTRHVFD-EITNKNVVFFNVLIRSYVNN 108 (571)
Q Consensus 32 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~li~~~~~~ 108 (571)
.+++.+=-+++.+..|..-+++-. ....+ - ....+-.+...|+..+++|...-+.. ...+|+. ..-|......
T Consensus 1387 ~tLa~aSfrc~~y~RalmylEs~~-~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1387 DTLARASFRCKAYARALMYLESHR-STEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhh
Confidence 355666667777777777777521 11111 1 12233344448888888888777766 3444433 3345566777
Q ss_pred CChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhCCCHHHHHHH
Q 008276 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG-NGLVAMYGKCGCLKEARRV 187 (571)
Q Consensus 109 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~l~~~~~~~g~~~~A~~~ 187 (571)
|++..|...|+.+.+.+ ++...+++-++......+.++...-..+-....- .+....+ +.=+.+-.+.++++.....
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 99999999999998864 3336778888888777888877776555544332 2222233 3334455777888877776
Q ss_pred HccCCCCCchhHHHH
Q 008276 188 LNDMPSKDVVTWNSM 202 (571)
Q Consensus 188 ~~~~~~~~~~~~~~l 202 (571)
.. ..+..+|...
T Consensus 1541 l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1541 LS---DRNIEYWSVE 1552 (2382)
T ss_pred hh---cccccchhHH
Confidence 65 3444445443
No 345
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.26 E-value=11 Score=34.54 Aligned_cols=100 Identities=13% Similarity=0.135 Sum_probs=67.6
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCh-----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008276 329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-QDV-----VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402 (571)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 402 (571)
|.+....+...++..-....+++.+...+-.+.. |+. .+-...++.+. .-+.++++.++..=+..|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 4444555555666655666777888777766653 211 11112222222 3356788888888888899999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008276 403 FVSVLSACSHAGLLEEGRYYFKIMTEQ 429 (571)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 429 (571)
++.+++.+.+.+++.+|.++.-.|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999888877766554
No 346
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.16 E-value=0.73 Score=37.60 Aligned_cols=90 Identities=13% Similarity=0.195 Sum_probs=64.6
Q ss_pred CChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHc
Q 008276 29 LSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108 (571)
Q Consensus 29 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 108 (571)
.....+++.+.+.+.+......++.+. ..+...++..++.++..|++.++.++..++++.... .-...++..+.+.
T Consensus 8 ~~~~~vi~~~~~~~~~~~l~~yLe~~~-~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 8 LEISEVISAFEERNQPEELIEYLEALV-KENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKH 83 (143)
T ss_dssp SCSCCCHHHCTTTT-GGGCTCCHHHHH-HTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTT
T ss_pred cCHHHHHHHHHhCCCHHHHHHHHHHHH-hcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhc
Confidence 344556777788888888888888888 666666788889999999998887888888774333 3344566777777
Q ss_pred CChhHHHHHHHHHH
Q 008276 109 YLYYDALHVYKNMS 122 (571)
Q Consensus 109 ~~~~~A~~~~~~m~ 122 (571)
|.+++|.-++.++.
T Consensus 84 ~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 84 GLYEEAVYLYSKLG 97 (143)
T ss_dssp TSHHHHHHHHHCCT
T ss_pred chHHHHHHHHHHcc
Confidence 77777777776653
No 347
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.15 E-value=2.4 Score=26.09 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCC
Q 008276 201 SMVAGYAQNGRFDEALDVCREMESLRI 227 (571)
Q Consensus 201 ~li~~~~~~g~~~~a~~~~~~m~~~g~ 227 (571)
.+..+|...|+.+.|.+++++....|-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 467888999999999999998886543
No 348
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.81 E-value=62 Score=34.10 Aligned_cols=49 Identities=14% Similarity=0.302 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHHHHhhC---CC-CchhHH-----HHHHHHHhcCCHHHHHHHHHHHH
Q 008276 481 YSNMDIGILAADHIFHLA---PN-QSGYYV-----LLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 481 ~g~~~~A~~~~~~~~~~~---p~-~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
.|+..+.......+.... |+ ....|. .+...+...|+.++|.....+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 688887766666655433 22 223443 34445777899999998877654
No 349
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.54 E-value=4.8 Score=35.29 Aligned_cols=115 Identities=12% Similarity=0.040 Sum_probs=63.7
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHhcCCHH
Q 008276 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWG-SLVAACCLYSNMD 485 (571)
Q Consensus 409 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~l~~~~~~~g~~~ 485 (571)
.|.....++.|...|.+.. -+.|+. ..|..-+..+.+..+++.+..--.+. .+.|+..--. .+..+......++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3555566777777666665 335555 44556666666777777766555444 5566554333 3344455677777
Q ss_pred HHHHHHHHHHhhC-----CCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 008276 486 IGILAADHIFHLA-----PNQSGYYVLLSNIYAKAGRWGDVKRVRK 526 (571)
Q Consensus 486 ~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 526 (571)
+|+..++++.++. |.-..+...|..+-..-=...+..++.+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 7777777775533 2333445555443333333333444443
No 350
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.38 E-value=10 Score=28.29 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=33.2
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 008276 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509 (571)
Q Consensus 461 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 509 (571)
.+.+-|++....+.+++|.+.+|+..|+++++-+...-.+....|..++
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3366788888888889999999999999988888776654444665553
No 351
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.25 E-value=9.9 Score=28.02 Aligned_cols=47 Identities=11% Similarity=0.253 Sum_probs=32.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 008276 462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508 (571)
Q Consensus 462 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 508 (571)
+..-|++....+.+++|.+.+|+..|+++++-+...-.++...|..+
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 35677888888888888888888888888887665444344455444
No 352
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.86 E-value=22 Score=30.53 Aligned_cols=73 Identities=11% Similarity=-0.047 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 008276 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK--LVPRIEHFACLVDLLGRAGKVEEA 455 (571)
Q Consensus 382 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 455 (571)
+.|...|-.+...+.--++.....|...|. ..+.+++..++-...+... -.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444444444444443333333333433333 3444555555544443211 133445555555555555555444
No 353
>PRK09687 putative lyase; Provisional
Probab=82.62 E-value=41 Score=31.17 Aligned_cols=75 Identities=12% Similarity=0.024 Sum_probs=36.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 008276 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441 (571)
Q Consensus 362 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 441 (571)
.++...-...+.++.+.++ ..|+..+-+..+.+. .....+.++...|+. +|...+..+.+. .||..+-..
T Consensus 203 D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~---~~d~~v~~~ 272 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYK---FDDNEIITK 272 (280)
T ss_pred CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhh---CCChhHHHH
Confidence 3455555555555555555 344444444444321 123455556666653 456666655542 235444444
Q ss_pred HHHHH
Q 008276 442 LVDLL 446 (571)
Q Consensus 442 l~~~~ 446 (571)
.+.++
T Consensus 273 a~~a~ 277 (280)
T PRK09687 273 AIDKL 277 (280)
T ss_pred HHHHH
Confidence 44433
No 354
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.46 E-value=1 Score=41.51 Aligned_cols=117 Identities=14% Similarity=0.072 Sum_probs=71.7
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 008276 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNER-IWGSLVAACCLYSNMDIGI 488 (571)
Q Consensus 411 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~ 488 (571)
...|.++.|++.|-..++ ..++....|..-...+.+.++...|++-+... .+.||.. -|-.-..+....|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 456778888888877765 33445566666677777788887777776655 5555432 3333344455678888888
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 489 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
..+..+.+++-+ ..+-..+-...-+++..++=...+++..+
T Consensus 203 ~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 203 HDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 888888887732 22333333444555555555555554443
No 355
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.02 E-value=26 Score=28.47 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=31.3
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 412 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
..++.+++..+++.+.--..-.+...++. ...+...|++++|..+|++.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILREL 70 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhh
Confidence 46777888888877764322223334433 34456788888888888887
No 356
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.72 E-value=79 Score=33.88 Aligned_cols=55 Identities=15% Similarity=0.066 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chhHH---HHHHH--HHhcCCHHHHHHHHHH
Q 008276 473 SLVAACCLYSNMDIGILAADHIFHLAPNQ--SGYYV---LLSNI--YAKAGRWGDVKRVRKF 527 (571)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~---~l~~~--~~~~g~~~~A~~~~~~ 527 (571)
.|+......|++++|...++++..+.-.. ...|. ..+.. -...|+.++|.....+
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 45555666778887777777776644211 11121 11111 2345777777666554
No 357
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=81.08 E-value=13 Score=32.73 Aligned_cols=64 Identities=9% Similarity=0.098 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCHH-------HHHHHHHHHHhhC--C----CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008276 471 WGSLVAACCLYSNMD-------IGILAADHIFHLA--P----NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534 (571)
Q Consensus 471 ~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~--p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 534 (571)
+.-+.+.|...|+.+ .|...|+++.+.. | +.......++....+.|++++|.+.|.++...+-.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 344445555566644 4455555555433 2 22346667888888899999999999888765433
No 358
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.91 E-value=63 Score=32.19 Aligned_cols=175 Identities=13% Similarity=0.114 Sum_probs=112.3
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 008276 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342 (571)
Q Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 342 (571)
|-....+++..+....++.-+..+..+|...| .+...|..++.+|... ..+.-..+|+++.+..+ .|+.....|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 34456677888888888888888889998854 5677888888888877 66778888988888764 34444445555
Q ss_pred HHHhcCCHHHHHHHHhhCCC------CCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhc
Q 008276 343 MYAKCGSLTEARTVFDQMRC------QDV---VSWTSMISAYGMSGQGYDAVALFSKMLMS-GLCPDSIAFVSVLSACSH 412 (571)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~------~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~ 412 (571)
.|-+ ++.+.+..+|..+.. .+. ..|.-+... -..+.+..+.+..+.... |..--...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5555 777777777776542 111 134444432 134556666666555542 333334455556667777
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008276 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446 (571)
Q Consensus 413 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (571)
..++.+|++++..+.+. -..|......+++-+
T Consensus 218 ~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEH--DEKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhh--cchhhhHHHHHHHHH
Confidence 88888888888877763 334555555555544
No 359
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=80.48 E-value=50 Score=30.83 Aligned_cols=146 Identities=11% Similarity=0.100 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--CC----CHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCH
Q 008276 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSH--AG----LLEEGRYYFKIMTEQYKLVPRI--EHFACLVDLLGRAGKV 452 (571)
Q Consensus 381 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 452 (571)
+++.+.+++.|.+.|++-+..+|......... .. ....|..+|+.|++++.+-... ..+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566788888888888777766553332222 22 3456888999998876654333 334443322 34443
Q ss_pred H----HHHHHHHhC---CCCC-CHH-HHHHHHHHHHhcCC--HHHHHHHHHHHHhhC-CCCchhHHHHHHHHHhcCCHHH
Q 008276 453 E----EAYDLIKQM---PMEP-NER-IWGSLVAACCLYSN--MDIGILAADHIFHLA-PNQSGYYVLLSNIYAKAGRWGD 520 (571)
Q Consensus 453 ~----~A~~~~~~~---~~~p-~~~-~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~ 520 (571)
+ .++.+++.+ ++.. |.. ....++..+-...+ ..++..+++.+.+.+ +.....|..++-.-.-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 3 344444444 4444 332 33333333222211 446777777777766 3333344444443333333324
Q ss_pred HHHHHHHH
Q 008276 521 VKRVRKFM 528 (571)
Q Consensus 521 A~~~~~~m 528 (571)
...-+.++
T Consensus 236 ~~~~i~ev 243 (297)
T PF13170_consen 236 IVEEIKEV 243 (297)
T ss_pred HHHHHHHH
Confidence 44433333
No 360
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.32 E-value=5.2 Score=22.06 Aligned_cols=30 Identities=3% Similarity=0.141 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 008276 482 SNMDIGILAADHIFHLAPNQSGYYVLLSNI 511 (571)
Q Consensus 482 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 511 (571)
|+.+.+..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999999888888888877653
No 361
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=78.36 E-value=25 Score=27.85 Aligned_cols=42 Identities=7% Similarity=0.142 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhC--CCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276 486 IGILAADHIFHLA--PNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527 (571)
Q Consensus 486 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 527 (571)
.+..+|+.+.+.+ ...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888888887744 67788999999999999999999999875
No 362
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.21 E-value=76 Score=31.57 Aligned_cols=241 Identities=12% Similarity=0.028 Sum_probs=129.4
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC------chHHHHHHHHHHHHcC-C-CCChhHHHHHHHHHHhcCCHH
Q 008276 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS------ALLLGRKIHRYVERKK-L-QPNLRLENALVDMYAKCGSLT 351 (571)
Q Consensus 280 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~ 351 (571)
.+...++|++..+ .-|+...+...|..|...- .+.....+++...+.+ . +.....|..+.-.++......
T Consensus 298 ~s~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r 375 (568)
T KOG2396|consen 298 ESRCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAR 375 (568)
T ss_pred HHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHh
Confidence 3444567766654 2455566666666553322 3333444455544422 2 223445555555555555443
Q ss_pred H-HHHHHhhCCCCChhHHHHHHHHHHhc-CChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHhhcCCC-HHHH--HHHHHH
Q 008276 352 E-ARTVFDQMRCQDVVSWTSMISAYGMS-GQGYDAV-ALFSKMLMSGLCPDSIAFVSVLSACSHAGL-LEEG--RYYFKI 425 (571)
Q Consensus 352 ~-a~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~-~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~-~~~a--~~~~~~ 425 (571)
+ |..+..+....|...|-.-++...+. .+++--. +.+......-..+....|+... .++ .... ..++..
T Consensus 376 ~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a 450 (568)
T KOG2396|consen 376 EVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISA 450 (568)
T ss_pred HHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHH
Confidence 3 44444455556666666655555422 1222221 2223333321222223343333 222 1111 122233
Q ss_pred HHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCC
Q 008276 426 MTEQYKLVPRI-EHFACLVDLLGRAGKVEEAYDLIKQM-PM-EPNERIWGSLVAACC--LYSNMDIGILAADHIFHLAPN 500 (571)
Q Consensus 426 ~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~ 500 (571)
+.. ...|+. ..-+.+++-+.+.|-..+|..++..+ .. .|+...|..++..-. ..-+...+...|+.+..-.-.
T Consensus 451 ~~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~ 528 (568)
T KOG2396|consen 451 LLS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGA 528 (568)
T ss_pred HHH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCC
Confidence 322 223444 33466788888889999999999887 33 346777777765422 223477788888888775447
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 501 QSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 501 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
++..|......-...|+.+.+-.++.+..
T Consensus 529 d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 529 DSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred ChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 78888877776778888888877765544
No 363
>PRK12798 chemotaxis protein; Reviewed
Probab=78.18 E-value=70 Score=31.11 Aligned_cols=183 Identities=13% Similarity=0.181 Sum_probs=99.0
Q ss_pred cCCHHHHHHHHhhCCC----CChhHHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhhcCCCHH
Q 008276 347 CGSLTEARTVFDQMRC----QDVVSWTSMISAY-GMSGQGYDAVALFSKMLMSGLCPDSI----AFVSVLSACSHAGLLE 417 (571)
Q Consensus 347 ~~~~~~a~~~~~~~~~----~~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~~~~~ 417 (571)
.|+.+++.+.+..+.. +....|-.|+.+- ....+..+|+++|+..+- .-|... ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4677777777766653 2334455555543 345567777777777655 344332 3333344456677777
Q ss_pred HHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008276 418 EGRYYFKIMTEQYKLVPRIEHF-ACLVDLLGRA---GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493 (571)
Q Consensus 418 ~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (571)
++..+-......+...|=...| .-+...+.+. -+.+.-..++..|.-.-....|..+...-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7776666666654444433222 2223333332 23445555566653222345677777777778888888777777
Q ss_pred HHhhCCCCchhHHHHHHH-----HHhcCCHHHHHHHHHHHHhCC
Q 008276 494 IFHLAPNQSGYYVLLSNI-----YAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 494 ~~~~~p~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m~~~~ 532 (571)
+..+... ...-...+.. ..-..++++|.+.+..+....
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~ 325 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRDK 325 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhh
Confidence 7776522 1111111111 223455666766666655443
No 364
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.51 E-value=5.2 Score=21.45 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 503 GYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 503 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
.+|..++..+...|++++|...+++..+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999887653
No 365
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.44 E-value=30 Score=35.03 Aligned_cols=135 Identities=13% Similarity=-0.017 Sum_probs=94.1
Q ss_pred cCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHH
Q 008276 28 LLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107 (571)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 107 (571)
-.....+++.+.+.|-.++|+++-. |+. .-.....+.|+++.|.++..+. .+..-|..|..+...
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s~----------D~d---~rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELST----------DPD---QRFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALS 678 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcCC----------Chh---hhhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhh
Confidence 3455567777777777666655422 222 1233456789999998876543 356779999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 008276 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187 (571)
Q Consensus 108 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 187 (571)
.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |.-.-+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHH
Confidence 9999999999987764 445666677778877777777777777632 2334457788999999998
Q ss_pred HccCC
Q 008276 188 LNDMP 192 (571)
Q Consensus 188 ~~~~~ 192 (571)
+..-.
T Consensus 744 Li~t~ 748 (794)
T KOG0276|consen 744 LISTQ 748 (794)
T ss_pred HHhcC
Confidence 87653
No 366
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.80 E-value=20 Score=33.26 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=67.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 008276 442 LVDLLGRAGKVEEAYDLIKQM----PMEP--NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515 (571)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 515 (571)
=.+-|.+..++..|...|.+- .-.| +...|+.=..+....|++..++.-..+++..+|.+..+|..-+.++...
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 345567788888888888765 1133 4556666666667789999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 008276 516 GRWGDVKRVRKFM 528 (571)
Q Consensus 516 g~~~~A~~~~~~m 528 (571)
.++++|....++.
T Consensus 167 e~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 167 ERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHhhh
Confidence 9977777665543
No 367
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.78 E-value=39 Score=29.91 Aligned_cols=114 Identities=13% Similarity=0.061 Sum_probs=76.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCH
Q 008276 375 YGMSGQGYDAVALFSKMLMSGLCPDSIA-FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE-HFACLVDLLGRAGKV 452 (571)
Q Consensus 375 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 452 (571)
|....+++.|+..|.+.+. +.|+..+ |..-+.++.+..+++.+..--.... .+.|+.. ....+...+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccc
Confidence 4455678999998888888 7787754 4556667778888888877666665 3456653 333455666667778
Q ss_pred HHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008276 453 EEAYDLIKQM-------PMEPNERIWGSLVAACCLYSNMDIGILAADH 493 (571)
Q Consensus 453 ~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (571)
++|+..+.+. ++.+....+..|..+--+.=...+..++.++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 8888777765 4556666777777765554455555554443
No 368
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.23 E-value=63 Score=29.63 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 438 HFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (571)
+++.....|..+|.+.+|.++.++. ...| +...|..++..+...||--.+.+.++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3455677889999999999999988 6666 788899999999999998888887777654
No 369
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=76.19 E-value=31 Score=26.08 Aligned_cols=82 Identities=13% Similarity=-0.009 Sum_probs=52.8
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 008276 142 GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221 (571)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 221 (571)
.....++|..+.+.+...+- ....+.-..+..+.+.|++++|+..=.....||...|-+|.. .+.|--+++...+.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45567888888888887763 233333334556788999999955555555678888766554 478888888888888
Q ss_pred HHHCC
Q 008276 222 MESLR 226 (571)
Q Consensus 222 m~~~g 226 (571)
+..+|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 76654
No 370
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=75.12 E-value=22 Score=27.77 Aligned_cols=70 Identities=10% Similarity=0.209 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 383 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
+..+-+..+...++.|++.....-+++|.+.+++..|.++|+.++.+ ..+....|..+++ +..-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH---------HHHHHHHHh
Confidence 45556667777789999999999999999999999999999998764 3333334544443 344555555
Q ss_pred C
Q 008276 463 P 463 (571)
Q Consensus 463 ~ 463 (571)
|
T Consensus 136 G 136 (149)
T KOG4077|consen 136 G 136 (149)
T ss_pred C
Confidence 4
No 371
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=74.92 E-value=2.4 Score=41.07 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=70.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 008276 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-ERIWGSLVAACCLYS 482 (571)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g 482 (571)
-+..+...+.++.|..++.++++. .|+. ..|..-..++.+.+++..|+.=+.++ ...|. ...|--=..+|.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 345566778899999999988853 5544 34444457778888888887665555 55553 334444455677788
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHH
Q 008276 483 NMDIGILAADHIFHLAPNQSGYYVLLS 509 (571)
Q Consensus 483 ~~~~A~~~~~~~~~~~p~~~~~~~~l~ 509 (571)
.+.+|...|+....+.|+++.+-..+-
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 888999999999889998876555443
No 372
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=74.76 E-value=70 Score=31.21 Aligned_cols=55 Identities=9% Similarity=-0.016 Sum_probs=35.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhh--cCCCHHHHHHHHHHHHHh
Q 008276 374 AYGMSGQGYDAVALFSKMLMSGLCPDSI--AFVSVLSACS--HAGLLEEGRYYFKIMTEQ 429 (571)
Q Consensus 374 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 429 (571)
.+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677888888888888776 555444 3444444443 356677888888777653
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.71 E-value=11 Score=26.64 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=23.1
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 008276 412 HAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRAGKVEEAYDL 458 (571)
Q Consensus 412 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 458 (571)
..++.++|+..|....+...-+++. .++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666665555542222222 3445555555555555555443
No 374
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=74.56 E-value=23 Score=25.63 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHH
Q 008276 47 LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDAL 115 (571)
Q Consensus 47 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 115 (571)
+.++++... +.|+- +......+-.+-...|+.+.|.+++..++ +.+..|..++.++...|.-.-|.
T Consensus 21 ~~~v~d~ll-~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCL-EQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHH-hcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 456777777 67743 44455555554456688899999999988 88888999999988888765554
No 375
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=74.33 E-value=13 Score=27.62 Aligned_cols=52 Identities=10% Similarity=0.065 Sum_probs=34.0
Q ss_pred HhcCCHHHHHHHHHHHHhhCCC----C-----chhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 479 CLYSNMDIGILAADHIFHLAPN----Q-----SGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 479 ~~~g~~~~A~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
.+.||+..|.+.+.+....... . ..+...++..+...|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4677777777766666653311 1 23345566777788888888888887763
No 376
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.19 E-value=87 Score=30.25 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHccCCC------CCchhHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 008276 166 FNGNGLVAMYGKCGCLKEARRVLNDMPS------KDVVTWNSMVAGYAQNGRFDEALDVCREMESL 225 (571)
Q Consensus 166 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 225 (571)
..+..+.+.|..+|+++.|++.|-+... .-+..|-.+|..-...|+|.....+..+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 4567788899999999999999998764 23346777788888899999999888888763
No 377
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.00 E-value=44 Score=30.40 Aligned_cols=84 Identities=11% Similarity=-0.013 Sum_probs=50.8
Q ss_pred HHHHHHhcCCHHHHHHH----HhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-----
Q 008276 340 LVDMYAKCGSLTEARTV----FDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC----- 410 (571)
Q Consensus 340 l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~----- 410 (571)
=|++++..+++.++... |+.-.+-.......-|-.|.+.+.+..+.++-..-....-.-+...|..++..|
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 36777788888877643 333333345555666667778888877777766655532111223465555544
Q ss_pred hcCCCHHHHHHHH
Q 008276 411 SHAGLLEEGRYYF 423 (571)
Q Consensus 411 ~~~~~~~~a~~~~ 423 (571)
.-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 3468888887776
No 378
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.32 E-value=12 Score=37.60 Aligned_cols=99 Identities=17% Similarity=0.061 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008276 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PM-EPNERIWGSLVAACCLYSNMDIGILA 490 (571)
Q Consensus 413 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~ 490 (571)
.|+...|...+..+........++ ..-.|...+.+.|...+|..++.+. .+ .-.+.++-.+.+++....+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v-~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDV-PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcc-cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 577778888777765432222222 2344666667777777777776654 22 22445666777888888888888888
Q ss_pred HHHHHhhCCCCchhHHHHHHHH
Q 008276 491 ADHIFHLAPNQSGYYVLLSNIY 512 (571)
Q Consensus 491 ~~~~~~~~p~~~~~~~~l~~~~ 512 (571)
|+.+.++.|+++..-..|...-
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHHH
Confidence 8888888888887776665443
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.31 E-value=11 Score=26.63 Aligned_cols=45 Identities=4% Similarity=0.073 Sum_probs=31.1
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHH---HHHHHHHhcCCHHHHHHH
Q 008276 480 LYSNMDIGILAADHIFHLAPNQSGYYV---LLSNIYAKAGRWGDVKRV 524 (571)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~ 524 (571)
...+.++|+..++++++..++.+.-|. .++.+|...|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888876655444333 555677778888887765
No 380
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=72.69 E-value=24 Score=28.57 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=46.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHH
Q 008276 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519 (571)
Q Consensus 452 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 519 (571)
.+.|.++.+-|| ...............|++..|.++.+.++..+|++..+....+.+|...|.-.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 356666777664 23334445556678999999999999999999999999999999888776443
No 381
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.35 E-value=70 Score=28.35 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 008276 482 SNMDIGILAADHIFHLAPN 500 (571)
Q Consensus 482 g~~~~A~~~~~~~~~~~p~ 500 (571)
.|.-.+...+++..+++|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 3444444455555555543
No 382
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.34 E-value=1.3e+02 Score=31.16 Aligned_cols=247 Identities=10% Similarity=0.006 Sum_probs=131.5
Q ss_pred HcCCchHHHHHHHHHHH-------CCCCCCHHHHHHHHHHhccC----C-chHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 008276 276 NNSMPAEAVDLYLQMEV-------HGIEPNAISVASVLPACGDL----S-ALLLGRKIHRYVERKKLQPNLRLENALVDM 343 (571)
Q Consensus 276 ~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~ll~~~~~~----~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 343 (571)
...+.+.|+.+|+.+.+ .|.+ .....+..+|.+. . +.+.|..++....+.| .|+.......+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 44577777777777765 4422 2333444444432 2 5667788887777776 4444443322222
Q ss_pred HHh-cCCHHHHHHHHhhCCC-CChhHHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH
Q 008276 344 YAK-CGSLTEARTVFDQMRC-QDVVSWTSMISAYG----MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417 (571)
Q Consensus 344 ~~~-~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 417 (571)
... ..+...|.++|....+ ..+..+-.+..+|. ...+...|..++++.-+.| .|...--...+..+.. ++++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 222 2356778888877664 33333333333332 2346788888888888876 3332222222333333 6666
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 008276 418 EGRYYFKIMTEQYKLVPRIEHFACLVDL---LGR----AGKVEEAYDLIKQMPMEPNERIWGSLVAACCL----YSNMDI 486 (571)
Q Consensus 418 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 486 (571)
.+.-.+..+.+. +...-...-..++.. ... ..+.+.+...+.+....-+......+...|.. ..+++.
T Consensus 415 ~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~ 493 (552)
T KOG1550|consen 415 TALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEK 493 (552)
T ss_pred HHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHH
Confidence 666555555443 222111110011111 111 12455666666666334455555555555443 346888
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhc-C--CHHHHHHHHHHHHhCC
Q 008276 487 GILAADHIFHLAPNQSGYYVLLSNIYAKA-G--RWGDVKRVRKFMNSKG 532 (571)
Q Consensus 487 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m~~~~ 532 (571)
|...|.++.... ......++..+.+. | .+..|.+++++..+.+
T Consensus 494 a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 494 AAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 888888877766 56666776666542 2 2577888887776543
No 383
>PRK10941 hypothetical protein; Provisional
Probab=70.49 E-value=44 Score=30.62 Aligned_cols=67 Identities=9% Similarity=0.027 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 008276 440 ACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506 (571)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 506 (571)
+.+-.+|.+.++++.|+++.+.+ .+.| ++.-+.--.-.|.+.|.+..|..-++..++..|+++.+-.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 34556667777777777777776 4455 4445555555677778888888888887777777665433
No 384
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=70.19 E-value=1.1e+02 Score=29.65 Aligned_cols=88 Identities=10% Similarity=0.037 Sum_probs=61.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCC-----CCchhHHHHHHHH
Q 008276 442 LVDLLGRAGKVEEAYDLIKQM-PMEP--NERIWGSLVAACC-LYSNMDIGILAADHIFHLAP-----NQSGYYVLLSNIY 512 (571)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~ 512 (571)
.+..+.+.|.+..|.++.+-+ .+.| |+......|..|+ +.++++--+.+++....... .-|..-.+++-++
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 356778899999999988876 5555 5555666677665 68888888888887655211 1234666777777
Q ss_pred HhcCCH---------------HHHHHHHHHHH
Q 008276 513 AKAGRW---------------GDVKRVRKFMN 529 (571)
Q Consensus 513 ~~~g~~---------------~~A~~~~~~m~ 529 (571)
...++. ++|...+.+..
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai 220 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAI 220 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHH
Confidence 778777 77877766654
No 385
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=70.19 E-value=75 Score=27.80 Aligned_cols=179 Identities=11% Similarity=-0.028 Sum_probs=95.5
Q ss_pred CCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh-HHHHHHH--HHHhcCChHHHHHHH
Q 008276 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV-SWTSMIS--AYGMSGQGYDAVALF 388 (571)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~--~~~~~~~~~~a~~~~ 388 (571)
.|-+.-|.--|.+..... +.-+.+||.|.-.+...|+++.|.+.|+...+-|+. -|..+=+ ++--.|++.-|.+-+
T Consensus 78 lGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 344444444444444432 233577888888888999999999999998874432 2333222 233467888888777
Q ss_pred HHHHHCCC-CCCHHHHHHHHHHhhcCCCHHHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-
Q 008276 389 SKMLMSGL-CPDSIAFVSVLSACSHAGLLEEGRYYF-KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPME- 465 (571)
Q Consensus 389 ~~m~~~g~-~p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 465 (571)
.+.-+.+. .|=...|.-+.. ..-++.+|..-+ ++.. +...+...|+. +..|.-.=..+.+.+-...-...
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~d~e~WG~~i-V~~yLgkiS~e~l~~~~~a~a~~n 229 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KSDKEQWGWNI-VEFYLGKISEETLMERLKADATDN 229 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hccHhhhhHHH-HHHHHhhccHHHHHHHHHhhccch
Confidence 66655421 121223333322 233455555433 3333 22223333332 22222111222222222221100
Q ss_pred -----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 008276 466 -----PNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498 (571)
Q Consensus 466 -----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 498 (571)
.-..+|--+..-+...|+.++|..+|+-++..+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 013456667778888999999999999888765
No 386
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=69.43 E-value=31 Score=27.46 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHhC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 008276 433 VPRIEHFACLVDLLGRAGKV---EEAYDLIKQM-P-MEP--NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY 504 (571)
Q Consensus 433 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 504 (571)
.++..+--.+..++.+..+. .+.+.+++++ + -.| +-...--|.-++.+.++++++.++.+..++.+|+|..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 34444445566666655543 3344555555 2 223 12233334556778888888888888888888876543
No 387
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=69.19 E-value=1.3e+02 Score=30.09 Aligned_cols=65 Identities=11% Similarity=-0.011 Sum_probs=40.2
Q ss_pred ccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC
Q 008276 27 TLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92 (571)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 92 (571)
.+-.|...+.-+.+.+.+.....+|.++...++..|+..++.+. .-|-..-+++.|+.+|.+-.+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRGLR 168 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHHhh
Confidence 34455666677777777888888888888444444444444332 233333448888888876654
No 388
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=68.71 E-value=97 Score=28.52 Aligned_cols=260 Identities=12% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChh-------HHHHHHHHHHhCCCCCCcccHHHHHHHhhcC
Q 008276 71 MRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYY-------DALHVYKNMSVHGFDPDCYTYPCVLKACSGS 143 (571)
Q Consensus 71 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~-------~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 143 (571)
+.......+++.|.++...-+..+......+.+.+.+..+.. .=..+|+.--.. +.|+...|
T Consensus 3 ~~~~L~~~df~~a~~ll~~~~~~~l~~L~~i~~~l~~l~~~~~~~i~~~~W~~~Fd~~WPl-v~~~~~~y---------- 71 (292)
T PF13929_consen 3 LLKFLSKQDFDEANKLLQSNPENSLDPLKSIVSTLSQLPQSTEKKINIENWKKFFDSHWPL-VDPSETAY---------- 71 (292)
T ss_pred HHHHHHHhhHHHHHHHHccCCcchhHHHHHHHHHHHhCccccccccCHHHHHHHHHhcCCC-CCCCccch----------
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC-------HHHHHHHHcc----CCCCCchhHHHHHHHHHhCCCc
Q 008276 144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC-------LKEARRVLND----MPSKDVVTWNSMVAGYAQNGRF 212 (571)
Q Consensus 144 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~----~~~~~~~~~~~li~~~~~~g~~ 212 (571)
++.-.+++.-+-.. .|.....+.++.-|....+ -++-...++- +......-|..|+.. +..+
T Consensus 72 --W~~R~~Fl~lLn~~--~p~~y~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~---N~~V 144 (292)
T PF13929_consen 72 --WSLRLKFLKLLNIA--DPQNYSVRRFINDYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKR---NKIV 144 (292)
T ss_pred --HHHHHHHHHHHhhc--CcccCCHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHh---hHHH
Q ss_pred hHHHHHHHHHHH-CCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCC-----CCChhhHHHHHHHHHHcCCchHHHHH
Q 008276 213 DEALDVCREMES-LRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD-----NKNLVSWNVMIAVYANNSMPAEAVDL 286 (571)
Q Consensus 213 ~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~ 286 (571)
.+|+++|+.... ..+--|..+...+++..............++.+-+. .++..+...++..++..++|.+-+++
T Consensus 145 v~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~f 224 (292)
T PF13929_consen 145 VEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQF 224 (292)
T ss_pred HHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHH
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHhccCCchHHHHHHHHH-----HHHcCCCCChhHHHHHHHHHHhcC
Q 008276 287 YLQMEVH-GIEPNAISVASVLPACGDLSALLLGRKIHRY-----VERKKLQPNLRLENALVDMYAKCG 348 (571)
Q Consensus 287 ~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~ 348 (571)
++..... +..-|...|..+|......|+..-..++... +.+.++..+...-..+-..+.+.|
T Consensus 225 W~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~vd 292 (292)
T PF13929_consen 225 WEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKVD 292 (292)
T ss_pred HHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhcC
No 389
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.53 E-value=84 Score=31.16 Aligned_cols=96 Identities=19% Similarity=0.142 Sum_probs=53.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH---HhCCCCCCCceE--EEECCEEEE
Q 008276 475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM---NSKGIKKMPGAS--VEMNDQVQI 549 (571)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~~~--~~~~~~~~~ 549 (571)
+.++.+..+...+..-.+-+.....+++.....-...+.-.|++..|.+++... .+.|...+|.++ |.-++-=..
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI 292 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI 292 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence 344455555555555555444444556666666677778888888888877654 244555565555 443332222
Q ss_pred E-------------eCCC-CCCCCCcCCCCCCCCC
Q 008276 550 I-------------ALPL-RSSKCLTTGPKNVPPI 570 (571)
Q Consensus 550 ~-------------~~~~-~~~~~~~~~~~~~~~~ 570 (571)
| .-.. +++.+++.|.++-|+|
T Consensus 293 h~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 293 HYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 2 2222 2466666666665554
No 390
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.68 E-value=49 Score=24.74 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008276 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394 (571)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 394 (571)
.++|..|-+.+...+.. ...+--.-+..+...|++++|..+.+....||...|..|-.. +.|-.+++..-+..|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 34555555544443311 222222233456677888888888888877888877776543 566666666666666666
Q ss_pred CCCCCHHHH
Q 008276 395 GLCPDSIAF 403 (571)
Q Consensus 395 g~~p~~~~~ 403 (571)
| .|....|
T Consensus 98 g-~p~lq~F 105 (115)
T TIGR02508 98 G-DPRLQTF 105 (115)
T ss_pred C-CHHHHHH
Confidence 4 3343343
No 391
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.65 E-value=1.9e+02 Score=31.57 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 008276 97 FFNVLIRSYVNNYLYYDALHVYKNMSVH 124 (571)
Q Consensus 97 ~~~~li~~~~~~~~~~~A~~~~~~m~~~ 124 (571)
-|..|+..|...|..++|+++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4888999999999999999999998763
No 392
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.51 E-value=1.8e+02 Score=30.84 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCh
Q 008276 339 ALVDMYAKCGSLTEARTVFDQMRCQDV 365 (571)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~~~ 365 (571)
.|+..|...+++..|..++-...++++
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhccChHH
Confidence 477888888888888888877776544
No 393
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=66.50 E-value=51 Score=25.59 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-------hCCCCchhHH----HHHHHHHhcCCHHHHHHHHHHH
Q 008276 469 RIWGSLVAACCLYSNMDIGILAADHIFH-------LAPNQSGYYV----LLSNIYAKAGRWGDVKRVRKFM 528 (571)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~----~l~~~~~~~g~~~~A~~~~~~m 528 (571)
.++..|-.++...|++++++...++++. +..+.-..|. +-+.++...|+.++|...|+..
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3445555666667777666555555443 3344333333 4455777889999988877643
No 394
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=65.45 E-value=1.4e+02 Score=29.25 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHH
Q 008276 267 WNVMIAVYANNSMPAEAVDLYLQM 290 (571)
Q Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~m 290 (571)
...+|.-|...|+..+..+.++.+
T Consensus 348 ~~~IIqEYFlsgDt~Evi~~L~DL 371 (645)
T KOG0403|consen 348 LTPIIQEYFLSGDTPEVIRSLRDL 371 (645)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHc
Confidence 456778888888888887777754
No 395
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.65 E-value=1.1e+02 Score=27.87 Aligned_cols=159 Identities=16% Similarity=0.050 Sum_probs=76.2
Q ss_pred hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHhhcCCCHH-HHH
Q 008276 346 KCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALF----SKMLMSGLCPDSIAFVSVLSACSHAGLLE-EGR 420 (571)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~~~~~l~~~~~~~~~~~-~a~ 420 (571)
+.+++++|.+++..- ...+.+.|+...|.++. +-..+.+.++|......++..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345666666655332 12344555554443333 33333456666655555555444332211 122
Q ss_pred HHHHHHH---Hh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 421 YYFKIMT---EQ-YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 421 ~~~~~~~---~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (571)
++.+.+. +. ..-.-++.....+...|.+.|++.+|+..|-.-+ .|+...+..++......|.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~------------- 136 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGY------------- 136 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTS-------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcC-------------
Confidence 2222221 11 0122456777888999999999999987775542 2333333223333222232
Q ss_pred hCCCCchhHH-HHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 497 LAPNQSGYYV-LLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 497 ~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
|.....|. ..+--|...|+...|...++...++
T Consensus 137 --~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 137 --PSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp --S--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred --CcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33333333 3334577889999999988887755
No 396
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.34 E-value=31 Score=29.79 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 008276 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499 (571)
Q Consensus 463 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 499 (571)
...|++..|..++.++...|+.++|.+..+++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4467777777777777777777777777777777777
No 397
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=64.28 E-value=1.4e+02 Score=28.76 Aligned_cols=95 Identities=19% Similarity=0.240 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHhhCCCC----
Q 008276 438 HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS------------LVAACCLYSNMDIGILAADHIFHLAPNQ---- 501 (571)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~~~~p~~---- 501 (571)
.-..|.+.+..+|++++|.+++.+.+++ ||.+ =++.|...+|+-.|.-+-+++....-+.
T Consensus 133 lTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~ 208 (439)
T KOG1498|consen 133 LTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQ 208 (439)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHH
Confidence 3456778888999999999999887322 2222 2456778899999988888877644222
Q ss_pred ---chhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008276 502 ---SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKM 536 (571)
Q Consensus 502 ---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 536 (571)
...|..++....+.+.+=++-+.++...+.|.-+.
T Consensus 209 ~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 209 ELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 23688899988899999999999999887665443
No 398
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.20 E-value=81 Score=28.80 Aligned_cols=88 Identities=11% Similarity=0.018 Sum_probs=53.2
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh---
Q 008276 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK--- 346 (571)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 346 (571)
=|.+++..++|.+++.+.-+.-+.--+........-|-.|.+.+.+..+.++-.......-.-+..-|..+++.|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 36788888999998877655443222222334444455577888888887777777764333333446665555543
Q ss_pred --cCCHHHHHHHH
Q 008276 347 --CGSLTEARTVF 357 (571)
Q Consensus 347 --~~~~~~a~~~~ 357 (571)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 46666666655
No 399
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.64 E-value=1.2e+02 Score=27.77 Aligned_cols=272 Identities=11% Similarity=0.067 Sum_probs=131.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCch
Q 008276 202 MVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA 281 (571)
Q Consensus 202 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 281 (571)
+.+-..+.+++++|+..|.+....|+..|..+.+.- ..+...+...|...|++.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEq--------------------------E~tvlel~~lyv~~g~~~ 62 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQ--------------------------EATVLELFKLYVSKGDYC 62 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHH--------------------------HHHHHHHHHHHHhcCCcc
Confidence 445567788999999999999999988877664331 123344555666666665
Q ss_pred HHHHHHHHHHH----CCCCCCHHHHHHHHHHhccC-CchHHHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHhcCCHH
Q 008276 282 EAVDLYLQMEV----HGIEPNAISVASVLPACGDL-SALLLGRKIHRYVERKKLQPN-----LRLENALVDMYAKCGSLT 351 (571)
Q Consensus 282 ~A~~~~~~m~~----~g~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~ 351 (571)
.--+.....++ -.-+........++.-+... ..++....+.....+...... ...-..++..+.+.|++.
T Consensus 63 ~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~Ys 142 (421)
T COG5159 63 SLGDTITSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYS 142 (421)
T ss_pred hHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 54444433221 11111223344455444332 344555555444443221111 122245778888999999
Q ss_pred HHHHHHhhCC--------CCChhHHHHH-HHHHHhcCChHHHHHHHHHHHH----CCCCCCHHHHHHHHHH--hhcCCCH
Q 008276 352 EARTVFDQMR--------CQDVVSWTSM-ISAYGMSGQGYDAVALFSKMLM----SGLCPDSIAFVSVLSA--CSHAGLL 416 (571)
Q Consensus 352 ~a~~~~~~~~--------~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~~~~~l~~~--~~~~~~~ 416 (571)
+|..+...+. +++..+...+ -..|-..++..++..-+...+. .-++|-...-.-++.+ .|...++
T Consensus 143 dalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dy 222 (421)
T COG5159 143 DALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDY 222 (421)
T ss_pred HHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccc
Confidence 9887665443 1333322211 1233334444444433333322 1134433333334443 2455677
Q ss_pred HHHHHHHHHHHHhcC-CCCCHHHHHHH---HHHHHhcCCHHHHHHHHHhC-CCC-C---CHHHHHHHHHHHH--hcCCHH
Q 008276 417 EEGRYYFKIMTEQYK-LVPRIEHFACL---VDLLGRAGKVEEAYDLIKQM-PME-P---NERIWGSLVAACC--LYSNMD 485 (571)
Q Consensus 417 ~~a~~~~~~~~~~~~-~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~-~~~-p---~~~~~~~l~~~~~--~~g~~~ 485 (571)
..|..+|-+..+.+. ...+......+ +-.-.-.++.++.-.++..- ..+ - .......+..++. ...++.
T Consensus 223 ktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~ 302 (421)
T COG5159 223 KTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFS 302 (421)
T ss_pred hhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHH
Confidence 788887777766321 12333333222 22222345566665555432 111 1 1222333333332 234566
Q ss_pred HHHHHHHHHHhhCC
Q 008276 486 IGILAADHIFHLAP 499 (571)
Q Consensus 486 ~A~~~~~~~~~~~p 499 (571)
.|++-|+.-+..+|
T Consensus 303 ~aL~qY~~el~~D~ 316 (421)
T COG5159 303 DALAQYSDELHQDS 316 (421)
T ss_pred HHHHHhhHHhccCH
Confidence 66666554444333
No 400
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=63.06 E-value=18 Score=33.26 Aligned_cols=80 Identities=8% Similarity=0.066 Sum_probs=56.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 008276 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGS-LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507 (571)
Q Consensus 431 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 507 (571)
.+..|+..|...+....+.|.+.+.-.++.++ ...| |+..|-. ...-+...++++.+..++.+.++.+|++|..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 45566777777776666777777777777776 4455 5555533 2233557889999999999999999999988876
Q ss_pred HHH
Q 008276 508 LSN 510 (571)
Q Consensus 508 l~~ 510 (571)
...
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 544
No 401
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=62.57 E-value=2.6e+02 Score=31.25 Aligned_cols=127 Identities=11% Similarity=0.021 Sum_probs=66.0
Q ss_pred CCChhhHHHHHHHHHHcCCchH-HHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHH
Q 008276 261 NKNLVSWNVMIAVYANNSMPAE-AVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339 (571)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (571)
.++...-...+.++...+..+. +...+..+.. .+|...-...+.++...|....+...+..+.+ .++..+-..
T Consensus 753 D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~ 826 (897)
T PRK13800 753 DENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQG 826 (897)
T ss_pred CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHH
Confidence 3344444445555555554332 3344444432 34555566666666666655444333333332 234455555
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008276 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393 (571)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 393 (571)
.+.++...+..+....+...+..++...-...+.++.+.+....+...+..+.+
T Consensus 827 Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 827 AARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 666666666544444444445556666666666666665334456666665555
No 402
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.30 E-value=39 Score=34.13 Aligned_cols=133 Identities=14% Similarity=0.077 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhC-CCCC--CHHH
Q 008276 397 CPDSIAFVSVLSACSHA--GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR-AGKVEEAYDLIKQM-PMEP--NERI 470 (571)
Q Consensus 397 ~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~-~~~p--~~~~ 470 (571)
-|+..+...++...... ..-+-+..++-.|.+ .+.|--...| +...|.+ .|+...|...+..+ ...| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 35666655555443322 223445555555543 3333322222 3344544 68888898887766 4444 2334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
...|.....+.|-.-+|-.++.+.+.+.-..+-++..++.+|....+.+.|++.+++..+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 55677777788888899999999999988788899999999999999999999999887654
No 403
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=62.11 E-value=2.6e+02 Score=31.19 Aligned_cols=140 Identities=7% Similarity=-0.024 Sum_probs=65.5
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 008276 61 HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC 140 (571)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 140 (571)
.+++.+...-+..+.+.+..+....+...+.+++...-...+.++.+.+........+..+... +|...-...+.++
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~aL 708 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALDVL 708 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHHHH
Confidence 5677777777888887776554444555555566665555555555443222222233333332 3444444444444
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCC
Q 008276 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211 (571)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 211 (571)
...+..+ .. .+-.+++ .+|..+-...+.++.+.+..+. +......++...-...+.++...+.
T Consensus 709 ~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 709 RALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGA 771 (897)
T ss_pred HhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhcc
Confidence 4332111 11 1111221 3444444555555555444322 2222333444444455555555444
No 404
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=61.21 E-value=1.6e+02 Score=28.47 Aligned_cols=126 Identities=13% Similarity=0.023 Sum_probs=70.4
Q ss_pred hccccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHH-HHHHHhhc---CCChHHHHHHHcccCCCChhh
Q 008276 22 LSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGL-KLMRTYGA---CGQMVDTRHVFDEITNKNVVF 97 (571)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~ 97 (571)
-.+|.-+.+.-.+..++.+.|+.+.|.++.++.+ .++. ++...+.. ......+ -++--...|...
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL---------f~~e~~~~~~F~~~~~~~~~g~~--rL~~~~~eNR~f 102 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL---------FAFERAFHPSFSPFRSNLTSGNC--RLDYRRPENRQF 102 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HHHHHHHHHHhhhhhcccccCcc--ccCCccccchHH
Confidence 4445555555566666677777777777666665 1111 11111110 0000000 011111125555
Q ss_pred HHHH---HHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhh-cCCChHHHHHHHHHHHH
Q 008276 98 FNVL---IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACS-GSNSLLVGLQIHCSVVK 158 (571)
Q Consensus 98 ~~~l---i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~ 158 (571)
|-++ |..+.+.|-+..|+++.+-+...+..-|+..-...|+.++ +.++++--.++.+....
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 5544 5678889999999999998887653335655566666654 77888877777776554
No 405
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.09 E-value=58 Score=24.06 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=15.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhC
Q 008276 474 LVAACCLYSNMDIGILAADHIFHLA 498 (571)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~~ 498 (571)
+.......|++++|+..+++++++-
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3334455677777777777666643
No 406
>PRK14700 recombination factor protein RarA; Provisional
Probab=60.99 E-value=1.4e+02 Score=27.73 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHH---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 008276 264 LVSWNVMIAVYAN---NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313 (571)
Q Consensus 264 ~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 313 (571)
...+..+++++.+ -.|.+.|+-++..|++.|..|....-..++.+.-..|
T Consensus 123 gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 123 GKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred cchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3445555666655 4689999999999999998888888888887776666
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.94 E-value=39 Score=29.13 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
..|++.+|..++.++...|+.++|.+...++
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555555555555555555555544
No 408
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=60.67 E-value=51 Score=32.18 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh--------hCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 473 SLVAACCLYSNMDIGILAADHIFH--------LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
.|++.++-.||+..|+++++-+-- ..+-..+++..++-+|.-.+|+.+|.+.|....
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566655555543211 113345567777777777777777777776654
No 409
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=60.59 E-value=17 Score=31.85 Aligned_cols=55 Identities=22% Similarity=0.303 Sum_probs=29.5
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276 447 GRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501 (571)
Q Consensus 447 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 501 (571)
.+.++.+.|.+++.++ ...| ....|--+....-+.|+.+.|.+.|++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445555555555554 3333 34455555555555666666666666666655544
No 410
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=60.50 E-value=73 Score=24.22 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008276 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393 (571)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 393 (571)
..++|..|.+.+...+. ....+--.-+..+.+.|++++|...=.....||...|.+|-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34555555555555442 122222223334555666666633333333455555555433 255555555555555544
Q ss_pred C
Q 008276 394 S 394 (571)
Q Consensus 394 ~ 394 (571)
+
T Consensus 98 ~ 98 (116)
T PF09477_consen 98 S 98 (116)
T ss_dssp -
T ss_pred C
Confidence 3
No 411
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.27 E-value=75 Score=24.31 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008276 367 SWTSMISAYGMSGQGYDAVALFSKMLM 393 (571)
Q Consensus 367 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 393 (571)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366677777777777777777777665
No 412
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.43 E-value=64 Score=24.68 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 008276 97 FFNVLIRSYVNNYLYYDALHVYKNMSV 123 (571)
Q Consensus 97 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 123 (571)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488888888888888888888888766
No 413
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=59.37 E-value=21 Score=31.34 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=51.1
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008276 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533 (571)
Q Consensus 478 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 533 (571)
..+.+|.+.+.+++.++.++-|.....|..++....++|+++.|.+.+++..+-+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 45689999999999999999999999999999999999999999999999886653
No 414
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=59.07 E-value=88 Score=24.71 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhC--CCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 008276 487 GILAADHIFHLA--PNQSGYYVLLSNIYAKAGRWGDVKRVRK 526 (571)
Q Consensus 487 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 526 (571)
...+|..+.+.+ ...+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456677776644 6677788899999999999999999886
No 415
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.26 E-value=69 Score=23.27 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHH
Q 008276 150 LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215 (571)
Q Consensus 150 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 215 (571)
.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..++ .....|..++.++-..|.-+-|
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 445555555552 222222222222235577777777777777 6667777777777777665444
No 416
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.69 E-value=45 Score=20.95 Aligned_cols=38 Identities=8% Similarity=0.130 Sum_probs=30.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276 203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240 (571)
Q Consensus 203 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 240 (571)
+....+.|-..++..++++|.+.|+..+...+..++..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 33446788888999999999999999888887776653
No 417
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=57.28 E-value=75 Score=23.33 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=21.6
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 490 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
.+++.++.+|+|......++..+...|++++|.+.+-++...
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344445555555555555555555555555555555555433
No 418
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=56.76 E-value=75 Score=24.97 Aligned_cols=48 Identities=13% Similarity=0.217 Sum_probs=35.7
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 008276 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508 (571)
Q Consensus 461 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 508 (571)
.+.+-|++.....-+++|.+.+|+..|..+++-+...-++....|-.+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 346778888888888888888888888888887776655544445444
No 419
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.65 E-value=23 Score=23.82 Aligned_cols=29 Identities=10% Similarity=0.016 Sum_probs=20.9
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
..-...++.+|...|++++|.++++++.+
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33456777888888888888888887753
No 420
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=56.38 E-value=72 Score=25.52 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhh-CCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 465 EPNERIWGSLVAACCLYS---NMDIGILAADHIFHL-APN-QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 465 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
.++..+--.+.+++.+.. +..+.+.+++...+. .|. ......-|+-++.+.|+|+.++++.+.+.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 455555566777776644 566889999999873 343 34455677778999999999999999988664
No 421
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.33 E-value=1.3e+02 Score=31.11 Aligned_cols=84 Identities=8% Similarity=0.018 Sum_probs=63.2
Q ss_pred hcCCHHHHHHHHHhC-CCCC-C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHH
Q 008276 448 RAGKVEEAYDLIKQM-PMEP-N------ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG 519 (571)
Q Consensus 448 ~~g~~~~A~~~~~~~-~~~p-~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 519 (571)
+..++..+.+.|..- ..-| | ....+.+--+|....+.|.|.++++++.+.+|.++-.-..+..+....|+-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 455677777776643 1111 1 2234555666778889999999999999999999888888888899999999
Q ss_pred HHHHHHHHHHhC
Q 008276 520 DVKRVRKFMNSK 531 (571)
Q Consensus 520 ~A~~~~~~m~~~ 531 (571)
+|+.++......
T Consensus 446 ~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 446 EALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHhh
Confidence 999988877644
No 422
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=55.20 E-value=40 Score=19.63 Aligned_cols=16 Identities=13% Similarity=-0.083 Sum_probs=7.2
Q ss_pred HHHHHhcCCHHHHHHH
Q 008276 475 VAACCLYSNMDIGILA 490 (571)
Q Consensus 475 ~~~~~~~g~~~~A~~~ 490 (571)
...+...|++++|+.+
T Consensus 8 a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 8 AYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHTT-HHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3334445555555555
No 423
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.07 E-value=1.9e+02 Score=27.13 Aligned_cols=26 Identities=12% Similarity=-0.008 Sum_probs=15.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHH
Q 008276 402 AFVSVLSACSHAGLLEEGRYYFKIMT 427 (571)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 427 (571)
.+......|++.|+-+.|.+.+.+..
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~ 131 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTY 131 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44445555666666666666665543
No 424
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=53.51 E-value=1.2e+02 Score=24.65 Aligned_cols=79 Identities=8% Similarity=0.054 Sum_probs=54.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCC---------CCchhHHHHHHHHHhCCC-chHHHHHHHHHHHCCCCCCHHHHHHH
Q 008276 168 GNGLVAMYGKCGCLKEARRVLNDMPS---------KDVVTWNSMVAGYAQNGR-FDEALDVCREMESLRIKPDADTMASL 237 (571)
Q Consensus 168 ~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~l 237 (571)
.|.++.-....+.+...+.+++.+.. .+-..|+.++.+.....- --.+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35555555555555555555554431 356678899988865555 34567888999888889999999888
Q ss_pred HHHhcCCCC
Q 008276 238 LPSVTNTSP 246 (571)
Q Consensus 238 l~~~~~~~~ 246 (571)
+.++.+...
T Consensus 122 i~~~l~g~~ 130 (145)
T PF13762_consen 122 IKAALRGYF 130 (145)
T ss_pred HHHHHcCCC
Confidence 888876643
No 425
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.09 E-value=1.1e+02 Score=24.14 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHH
Q 008276 383 DAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKI 425 (571)
Q Consensus 383 ~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 425 (571)
.+.++|..|...|+--... .|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6666666666665554433 455555556666666666666654
No 426
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.13 E-value=27 Score=32.11 Aligned_cols=44 Identities=25% Similarity=0.310 Sum_probs=35.0
Q ss_pred CCch-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 008276 194 KDVV-TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASL 237 (571)
Q Consensus 194 ~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 237 (571)
+|.. -|+..|....+.||+++|+.++++.+..|+.--..+|...
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3443 4789999999999999999999999999976665555443
No 427
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=52.07 E-value=65 Score=26.29 Aligned_cols=64 Identities=11% Similarity=0.091 Sum_probs=42.1
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 008276 116 HVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180 (571)
Q Consensus 116 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 180 (571)
++.+.+.+.|++++..-. .++..+...++.-.|.++++++.+.+...+..|.-.-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 344556677777666544 4566666676778888888888888766665554445566665553
No 428
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=51.96 E-value=55 Score=21.16 Aligned_cols=27 Identities=19% Similarity=0.071 Sum_probs=13.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 008276 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSI 401 (571)
Q Consensus 373 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 401 (571)
-++.+.|++++|.+..+.+.+ +.|+..
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 345555666666666665555 455444
No 429
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.70 E-value=2.9e+02 Score=28.37 Aligned_cols=78 Identities=9% Similarity=-0.019 Sum_probs=51.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhh-cCCChHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHh
Q 008276 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACS-GSNSLLVGLQIHCSVVKVG---LDYNLFNGNGLVAMYGK 177 (571)
Q Consensus 102 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~~~ 177 (571)
+..+.+.|-+..|++.-+-+......-|+.....+|+.|+ +.++++--+++++.....+ .-|+-..-.+|...|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4567788999999998888887654446666677777765 6778888888877775433 23443333444455544
Q ss_pred CC
Q 008276 178 CG 179 (571)
Q Consensus 178 ~g 179 (571)
..
T Consensus 429 ~~ 430 (665)
T KOG2422|consen 429 KN 430 (665)
T ss_pred cC
Confidence 43
No 430
>PRK09857 putative transposase; Provisional
Probab=51.40 E-value=1.4e+02 Score=27.81 Aligned_cols=65 Identities=11% Similarity=0.041 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008276 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK 535 (571)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 535 (571)
+..++....+.++.++-.++++...+..|........++.-+.+.|.-++++++.++|...|+..
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 34455544566777777777777777667666677788888888888888999999999888764
No 431
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=50.85 E-value=1.9e+02 Score=26.02 Aligned_cols=160 Identities=15% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHh-ccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-
Q 008276 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC-GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC- 347 (571)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 347 (571)
++..+-+.++++++...++++...+...+..-.+.+-.+| ...|....+.+++..+....-.-.......++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred -----CCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCh-----------------HHHHHHHHHHHH---CCCCCCHHH
Q 008276 348 -----GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG-----------------YDAVALFSKMLM---SGLCPDSIA 402 (571)
Q Consensus 348 -----~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~-----------------~~a~~~~~~m~~---~g~~p~~~~ 402 (571)
.--.++..+++...-|...+-...+-.+-..|++ +.|...|++..+ ..++|...+
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred HHHHHHHhhc-----CCCHHHHHHHHHHHHHh
Q 008276 403 FVSVLSACSH-----AGLLEEGRYYFKIMTEQ 429 (571)
Q Consensus 403 ~~~l~~~~~~-----~~~~~~a~~~~~~~~~~ 429 (571)
+..++--++- .|+.++|.++-+.....
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
No 432
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=50.37 E-value=37 Score=31.18 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=32.8
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 008276 447 GRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505 (571)
Q Consensus 447 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 505 (571)
.+.|+.++|..+|+.. ...| ++.....+....-..++.-+|-+.|-+++...|.+..+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 3566677777776654 4444 233333333333345566666666666666666665443
No 433
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.36 E-value=2.8e+02 Score=27.82 Aligned_cols=103 Identities=15% Similarity=0.027 Sum_probs=70.8
Q ss_pred HHHHhcCCHHHHHHHHhhCC--C-------C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHH-------CCCCCCH--
Q 008276 342 DMYAKCGSLTEARTVFDQMR--C-------Q---DVVSWTSMISAYGMSGQGYDAVALFSKMLM-------SGLCPDS-- 400 (571)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~--~-------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~g~~p~~-- 400 (571)
+.+.-.|++.+|.+++-..- + | .-..||.|.-.+.+.|.+..+..+|.+..+ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34566799999999886543 1 1 122367777777778888888777777663 4655532
Q ss_pred ---------HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 008276 401 ---------IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447 (571)
Q Consensus 401 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (571)
.+|+. .-.+...|++-.|.+.|.+..+ -+..++..|.-|.++|.
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
Confidence 23433 3346788999999999999987 45567777877877765
No 434
>PHA02875 ankyrin repeat protein; Provisional
Probab=49.15 E-value=2.7e+02 Score=27.44 Aligned_cols=177 Identities=10% Similarity=0.033 Sum_probs=82.4
Q ss_pred hhCCChHHHHHHHHHHHHhhcCCCChhH--HHHHHHHhhcCCChHHHHHHHcccCCCChh--hHHHHHHHHHHcCChhHH
Q 008276 39 DKYPDIKTLKKLHAQIIINQHLHSNPSI--GLKLMRTYGACGQMVDTRHVFDEITNKNVV--FFNVLIRSYVNNYLYYDA 114 (571)
Q Consensus 39 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A 114 (571)
...|+.+. .+.++ +.|..++... ..+.+...+..|+.+-+.-+++.-..++.. .....+...+..|+.+.+
T Consensus 10 ~~~g~~~i----v~~Ll-~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v 84 (413)
T PHA02875 10 ILFGELDI----ARRLL-DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAV 84 (413)
T ss_pred HHhCCHHH----HHHHH-HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHH
Confidence 34566654 34444 4565555432 234455566677777666666554333221 112345556677777665
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCCCHHHHHHHHccCC
Q 008276 115 LHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN--GNGLVAMYGKCGCLKEARRVLNDMP 192 (571)
Q Consensus 115 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 192 (571)
..+++.-....-..+..-. ..+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.-.
T Consensus 85 ~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~ 159 (413)
T PHA02875 85 EELLDLGKFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA 159 (413)
T ss_pred HHHHHcCCcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence 5544321110000111111 2333334455543 4445555665554321 1234445556777777666665433
Q ss_pred C---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 008276 193 S---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230 (571)
Q Consensus 193 ~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 230 (571)
. .|..-++.+. ..+..|+. ++++.+.+.|..++
T Consensus 160 ~~~~~d~~g~TpL~-~A~~~g~~----eiv~~Ll~~ga~~n 195 (413)
T PHA02875 160 CLDIEDCCGCTPLI-IAMAKGDI----AICKMLLDSGANID 195 (413)
T ss_pred CCCCCCCCCCCHHH-HHHHcCCH----HHHHHHHhCCCCCC
Confidence 2 2222223332 23344553 34444555665554
No 435
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.03 E-value=36 Score=31.39 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 008276 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV 305 (571)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 305 (571)
-|+.-|....+.||+++|+.++++..+.|+.--..+|...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4678899999999999999999999998876555555433
No 436
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=48.21 E-value=2.5e+02 Score=26.62 Aligned_cols=119 Identities=12% Similarity=0.097 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh------cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008276 381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACS------HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454 (571)
Q Consensus 381 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (571)
++++..++.+....+. |.++.....|.++- ..-+|.....+|+.+.. +.|++.+-.+-.-+.....-.+.
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhHHh
Confidence 5788888888888765 88887777776653 23578888888888864 35665433333344455555777
Q ss_pred HHHHHHhCCCCCC---HHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 008276 455 AYDLIKQMPMEPN---ERIWGS-LVAACCLYSNMDIGILAADHIFHLAPNQSG 503 (571)
Q Consensus 455 A~~~~~~~~~~p~---~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 503 (571)
++.+.+.++-+|. ...|.. =...+.+.|..++|...|++++.+.++...
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 7777777744432 222333 334567899999999999999998875443
No 437
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=47.84 E-value=2.9e+02 Score=27.31 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCC--ChhHHHHHHHHHHhc--CChHHHHHHHHHHHH
Q 008276 338 NALVDMYAKCGSLTEARTVFDQMRCQ--DVVSWTSMISAYGMS--GQGYDAVALFSKMLM 393 (571)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~ 393 (571)
..+|+-|...|+..+..+.++.+.-| ++...-.+|..-... ..-+.|-.++..+.-
T Consensus 349 ~~IIqEYFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~ 408 (645)
T KOG0403|consen 349 TPIIQEYFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHG 408 (645)
T ss_pred HHHHHHHHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhc
Confidence 46788899999999999999887654 333333344333322 233445555555443
No 438
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.71 E-value=2.2e+02 Score=26.00 Aligned_cols=82 Identities=18% Similarity=0.200 Sum_probs=41.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 008276 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412 (571)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 412 (571)
++.....+...|.+.+++.+|+..|-.-..++...+..++......|...++ +...-..+ --|..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaV-L~yL~ 153 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAV-LQYLC 153 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHH-HHHHH
Confidence 5566777788888888888888776554433333332222222222222111 11122222 23455
Q ss_pred CCCHHHHHHHHHHHHHh
Q 008276 413 AGLLEEGRYYFKIMTEQ 429 (571)
Q Consensus 413 ~~~~~~a~~~~~~~~~~ 429 (571)
.++...|...++...+.
T Consensus 154 l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 154 LGNLRDANELFDTFTSK 170 (260)
T ss_dssp TTBHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 67778887777666543
No 439
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.37 E-value=27 Score=27.72 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=23.9
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008276 207 AQNGRFDEALDVCREMESLRIKPDADTMASLLP 239 (571)
Q Consensus 207 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 239 (571)
-..|.-..|..+|.+|++.|-+||. |+.|+.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 3466778899999999999999984 444443
No 440
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=47.32 E-value=1.5e+02 Score=27.77 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCc
Q 008276 441 CLVDLLGRAGKVEEAYDLIKQM-PMEPNER---IWGSLVAACCLYSNMDIGILAADHIFHLA-PNQS 502 (571)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 502 (571)
-+..+..+.|+..+|.+.|+.+ ...|-.. ....|+.+|....-+.+...++-+.-++. |.+.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA 346 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSA 346 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchH
Confidence 3444556678888888888776 3233222 23456777766666666666666555554 4433
No 441
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.14 E-value=2.8e+02 Score=27.12 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=42.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCcc--cHHHHHHHhh--cCCChHHHHHHHHHHHHh
Q 008276 102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCY--TYPCVLKACS--GSNSLLVGLQIHCSVVKV 159 (571)
Q Consensus 102 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~--~~~~~~~a~~~~~~~~~~ 159 (571)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44566889999999999999987 555555 3444555544 566788999999887765
No 442
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=46.97 E-value=2.6e+02 Score=26.55 Aligned_cols=135 Identities=10% Similarity=0.053 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHhcCC------------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 008276 364 DVVSWTSMISAYGMSGQ------------GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431 (571)
Q Consensus 364 ~~~~~~~li~~~~~~~~------------~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 431 (571)
|+.+|-.++..--..-. .+.-+.+|+++++. -+-+......++..+.+..+.+...+-|+.+.. .
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~--~ 94 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF--K 94 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--H
Q ss_pred CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHhC-----CCCCCH---------------HHHHHHHHHHHhcCCHHHHH
Q 008276 432 LVPRIEHFACLVDLLGR---AGKVEEAYDLIKQM-----PMEPNE---------------RIWGSLVAACCLYSNMDIGI 488 (571)
Q Consensus 432 ~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~-----~~~p~~---------------~~~~~l~~~~~~~g~~~~A~ 488 (571)
.+-+...|...+..... .-.++....+|.+. ...-+. ..+..+...+...|-.+.|.
T Consensus 95 ~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Av 174 (321)
T PF08424_consen 95 NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAV 174 (321)
T ss_pred CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHH
Q ss_pred HHHHHHHhhC---CCC
Q 008276 489 LAADHIFHLA---PNQ 501 (571)
Q Consensus 489 ~~~~~~~~~~---p~~ 501 (571)
.+++.+++.+ |..
T Consensus 175 a~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 175 ALWQALLEFNFFRPES 190 (321)
T ss_pred HHHHHHHHHHcCCccc
No 443
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=46.95 E-value=43 Score=32.95 Aligned_cols=104 Identities=14% Similarity=0.059 Sum_probs=74.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhc
Q 008276 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVS-VLSACSHAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRA 449 (571)
Q Consensus 372 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 449 (571)
+..+...++++.|..++.+.++ +.||...|.. -..++.+.+++..|..=+..+.+. .|+. ..|.--..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 4456678899999999999999 7887765443 347888999999999888887764 2332 3333334455556
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 008276 450 GKVEEAYDLIKQM-PMEPNERIWGSLVAACCL 480 (571)
Q Consensus 450 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~ 480 (571)
+.+.+|...|+.. .+.|+..-....+.-|-.
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 6778888888777 678887777777766643
No 444
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.89 E-value=1.3e+02 Score=25.67 Aligned_cols=55 Identities=16% Similarity=0.347 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCH--HHH-----HHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 008276 416 LEEGRYYFKIMTEQYKLVPRI--EHF-----ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIW 471 (571)
Q Consensus 416 ~~~a~~~~~~~~~~~~~~~~~--~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 471 (571)
++.|..+|+.+.+... .|.. ... ...+-.|.+.|.+++|.+++++.-..|+....
T Consensus 85 LESAl~v~~~I~~E~~-~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~ 146 (200)
T cd00280 85 LESALMVLESIEKEFS-LPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKL 146 (200)
T ss_pred HHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhH
Confidence 6778888888876422 2211 111 12233566777777777777776224444433
No 445
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=46.05 E-value=78 Score=28.79 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=40.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
-.++.+.++++.|....++.+.++|.++.-+.--+-+|.+.|.+.-|++-++...+.
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 345666777777777777777777777777777777777777777777777665544
No 446
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.69 E-value=25 Score=27.84 Aligned_cols=33 Identities=36% Similarity=0.486 Sum_probs=25.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 008276 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410 (571)
Q Consensus 376 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 410 (571)
...|.-..|..+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456667899999999999999986 56666543
No 447
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=45.56 E-value=2.7e+02 Score=26.28 Aligned_cols=80 Identities=15% Similarity=-0.026 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008276 417 EEGRYYFKIMTEQYKL---VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493 (571)
Q Consensus 417 ~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (571)
+.|.+.|+.......- ..++.....+.....+.|..+.-..+++.....++......++.+.....+.+...++++.
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~ 226 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDL 226 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHH
Confidence 4455555555442111 2334444444555555555444444444433234555555566666666666666666665
Q ss_pred HHh
Q 008276 494 IFH 496 (571)
Q Consensus 494 ~~~ 496 (571)
+..
T Consensus 227 ~l~ 229 (324)
T PF11838_consen 227 LLS 229 (324)
T ss_dssp HHC
T ss_pred HcC
Confidence 555
No 448
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=45.38 E-value=2.7e+02 Score=26.21 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhCCCCch
Q 008276 486 IGILAADHIFHLAPNQSG 503 (571)
Q Consensus 486 ~A~~~~~~~~~~~p~~~~ 503 (571)
.|.+.+.++.+.+|.-+.
T Consensus 380 ~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHHHHHHHhhcCCCCcH
Confidence 466667777777765443
No 449
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.03 E-value=1.1e+02 Score=27.82 Aligned_cols=56 Identities=7% Similarity=-0.060 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276 473 SLVAACCLYSNMDIGILAADHIFHLA------PNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528 (571)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 528 (571)
.+...|...|++++|.++|+.+...- .....+...+..++.+.|+.++.+.+.=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455566666666666666664321 112334445566666677777766654443
No 450
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=44.49 E-value=4.7e+02 Score=28.81 Aligned_cols=130 Identities=15% Similarity=0.073 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008276 315 LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS 394 (571)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 394 (571)
...|.++-..|.+.. +.++.++++.|..-.-.+.++...+.|.. -.....+.-.+.|.++..-
T Consensus 1163 r~da~klk~~me~qk--------~tli~AL~kKg~a~ak~e~l~g~~e~dae---------ee~s~ld~~~e~y~el~kw 1225 (1304)
T KOG1114|consen 1163 RPDAVKLKKKMEKQK--------DTLIDALVKKGEAFAKYEALKGHKEQDAE---------EELSKLDSYNENYQELLKW 1225 (1304)
T ss_pred cchHHHHHHHHHHHH--------HHHHHHHHHhhhHHhhhhhhcccccccch---------hhhhhhhhHHHHHHHHHHH
Confidence 344666666666543 56777777766433323333333322221 0112234455556665553
Q ss_pred CCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276 395 GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 395 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
--.-|..++..-.......|++-.+.+++.++.+..+..++...|..++..+...|-- ....+++.+
T Consensus 1226 ~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~~~ 1292 (1304)
T KOG1114|consen 1226 LDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVKNW 1292 (1304)
T ss_pred hhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHhhh
Confidence 1122444555555555677889999999999888777788888887777777777744 333344433
No 451
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.23 E-value=80 Score=19.83 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=23.4
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008276 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307 (571)
Q Consensus 274 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 307 (571)
..+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666777777777777777777776666554
No 452
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.02 E-value=3e+02 Score=26.40 Aligned_cols=16 Identities=13% Similarity=-0.074 Sum_probs=8.1
Q ss_pred hCCCHHHHHHHHccCC
Q 008276 177 KCGCLKEARRVLNDMP 192 (571)
Q Consensus 177 ~~g~~~~A~~~~~~~~ 192 (571)
...+++.|+-+|+...
T Consensus 195 glk~fe~Al~~~e~~v 210 (422)
T KOG2582|consen 195 GLKRFERALYLLEICV 210 (422)
T ss_pred ccccHHHHHHHHHHHH
Confidence 3445555555555443
No 453
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.51 E-value=3.4e+02 Score=26.91 Aligned_cols=48 Identities=23% Similarity=0.231 Sum_probs=32.9
Q ss_pred hHHHHHHHHHH---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 008276 266 SWNVMIAVYAN---NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313 (571)
Q Consensus 266 ~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 313 (571)
.+..++.++.+ .++.+.|+.++..|.+.|..|....-..+..++-..|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34455555555 4789999999999999998887666555555543333
No 454
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=43.26 E-value=3.2e+02 Score=26.58 Aligned_cols=53 Identities=15% Similarity=-0.078 Sum_probs=29.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHhh--cCCCHHHHHHHHHH
Q 008276 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIA----FVSVLSACS--HAGLLEEGRYYFKI 425 (571)
Q Consensus 373 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~l~~~~~--~~~~~~~a~~~~~~ 425 (571)
..+.+.+++..|.++|+++......|+... |..+..+|. ..-++++|.+.++.
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 345567777777777777777654444333 223333332 23455666666654
No 455
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.11 E-value=55 Score=21.97 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=10.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHH
Q 008276 405 SVLSACSHAGLLEEGRYYFKIMT 427 (571)
Q Consensus 405 ~l~~~~~~~~~~~~a~~~~~~~~ 427 (571)
.++.++...|++++|.++++.+.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444445555555555444443
No 456
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=43.05 E-value=2.1e+02 Score=26.66 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhcCCCHHHHH
Q 008276 401 IAFVSVLSACSHAGLLEEGR 420 (571)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~a~ 420 (571)
.+|.-|+.+++..|+.+..+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 35788888888888876543
No 457
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.77 E-value=2.7e+02 Score=25.44 Aligned_cols=89 Identities=7% Similarity=0.073 Sum_probs=55.2
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276 452 VEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMD-IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528 (571)
Q Consensus 452 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 528 (571)
+.+-++.+.++ ...| +-..|..=-......|++. .-+.+.+.++..+..+-.+|..--+++..-+.+++=+.+..+|
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~L 173 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADEL 173 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444444444 2222 4455544333333455555 5666777777776666677777777777777777777777777
Q ss_pred HhCCCCCCCceE
Q 008276 529 NSKGIKKMPGAS 540 (571)
Q Consensus 529 ~~~~~~~~~~~~ 540 (571)
.+.++..+.+|+
T Consensus 174 le~Di~NNSAWN 185 (318)
T KOG0530|consen 174 LEEDIRNNSAWN 185 (318)
T ss_pred HHHhhhccchhh
Confidence 777777777766
No 458
>PF13934 ELYS: Nuclear pore complex assembly
Probab=42.71 E-value=2.5e+02 Score=25.06 Aligned_cols=119 Identities=8% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008276 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACC 479 (571)
Q Consensus 400 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 479 (571)
+..|..+++++....+ .+-.+.++.+.+- ...|+.... ++.++...|+.+.|+.+++..+-.++...-..+.....
T Consensus 76 p~~~~~~~~g~W~LD~-~~~~~A~~~L~~p-s~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~L 151 (226)
T PF13934_consen 76 PPKYIKFIQGFWLLDH-GDFEEALELLSHP-SLIPWFPDK--ILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVAL 151 (226)
T ss_pred CHHHHHHHHHHHHhCh-HhHHHHHHHhCCC-CCCcccHHH--HHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH----hcCCHHHHHHH
Q 008276 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA----KAGRWGDVKRV 524 (571)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~----~~g~~~~A~~~ 524 (571)
.++.+.+|..+-+...+ +.....+..++..+. +.++.++-..+
T Consensus 152 a~~~v~EAf~~~R~~~~--~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPD--ELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HcCCHHHHHHHHHhCch--hhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 459
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=42.43 E-value=3.9e+02 Score=27.30 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC--ChhH---HHHHHHHHHhcCChHHHHHHHHHHHH
Q 008276 339 ALVDMYAKCGSLTEARTVFDQMRCQ--DVVS---WTSMISAYGMSGQGYDAVALFSKMLM 393 (571)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~ 393 (571)
.++.-|.+.+++++|..++..|.-. .... .+.+.+.+.+..--++.+..++.+..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 4667788888888888888888631 2222 33334444444434444444554444
No 460
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=42.21 E-value=1.3e+02 Score=30.16 Aligned_cols=57 Identities=9% Similarity=0.060 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
+...|-.++.-|...++|++|.++..... +...|.++.....+..+..-++..+..+
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~-------eqTMWAtlAa~Av~~~~m~~~EiAYaA~ 628 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ-------EQTMWATLAAVAVRKHQMQISEIAYAAA 628 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc-------chHHHHHHHHHHHhhccccHHHHHHHHh
Confidence 44456667777778888888888776553 3356777777777777766666555554
No 461
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.19 E-value=1.7e+02 Score=24.97 Aligned_cols=66 Identities=11% Similarity=0.153 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHCCCCCC--HHHH-----HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 008276 381 GYDAVALFSKMLMSGLCPD--SIAF-----VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450 (571)
Q Consensus 381 ~~~a~~~~~~m~~~g~~p~--~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (571)
.+.|+.+|+.+.+.--.|+ .... ...+-.|.+.|.+++|.+++++...+ |+.......+....+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d----~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD----PESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----CCchhHHHHHHHHHHcc
Confidence 6789999998887633331 1122 22344688999999999999998753 44443344444444443
No 462
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=42.15 E-value=4.6e+02 Score=28.00 Aligned_cols=191 Identities=13% Similarity=0.109 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChh----------HHHHHHHHHHhcCChH
Q 008276 317 LGRKIHRYVERKKLQPN---LRLENALVDMYAKCGSLTEARTVFDQMRC-QDVV----------SWTSMISAYGMSGQGY 382 (571)
Q Consensus 317 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~----------~~~~li~~~~~~~~~~ 382 (571)
+-..++.+|.+.--.|+ ..+...++-.|....+++...++.+.+.. ||.. .|.-.+.--.+.|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 33445556655432333 34445566666677777777777766654 3221 1222233334557778
Q ss_pred HHHHHHHHHHHCC--CCCCHHH-----HHHH--HHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-H
Q 008276 383 DAVALFSKMLMSG--LCPDSIA-----FVSV--LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK-V 452 (571)
Q Consensus 383 ~a~~~~~~m~~~g--~~p~~~~-----~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 452 (571)
+|+...-.+.+.. +.||..+ |.-+ -..|...+..+.|.+.|++.. .+.|+...--.+...+...|. +
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhc
Confidence 8888777766532 4566543 2211 122444556677777777765 446665443333444444442 2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 453 EEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 453 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
+...++ +.++ .. |-..+.+.|..+.-...|+-+.=. .+-.-+.++..|.+..+.|.+-
T Consensus 338 ens~El-q~Ig-----mk---Ln~LlgrKG~leklq~YWdV~~y~------------~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 338 ENSLEL-QQIG-----MK---LNSLLGRKGALEKLQEYWDVATYF------------EASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred cchHHH-HHHH-----HH---HHHHhhccchHHHHHHHHhHHHhh------------hhhhhccCHHHHHHHHHHHhcc
Confidence 222221 1111 11 222334667776666666543211 2223455666666666666543
No 463
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.89 E-value=97 Score=28.05 Aligned_cols=21 Identities=5% Similarity=-0.009 Sum_probs=10.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHH
Q 008276 406 VLSACSHAGLLEEGRYYFKIM 426 (571)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~~ 426 (571)
+..-|...|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 333444445555555555444
No 464
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=41.61 E-value=3.4e+02 Score=26.34 Aligned_cols=92 Identities=8% Similarity=0.080 Sum_probs=47.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC--CC-CCCHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-----HHHH
Q 008276 371 MISAYGMSGQGYDAVALFSKMLMS--GL-CPDSI--AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI-----EHFA 440 (571)
Q Consensus 371 li~~~~~~~~~~~a~~~~~~m~~~--g~-~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ 440 (571)
|...+-..|+.++|..++.+..-. |- .-... ...--++.|...++|-.|.-+-+++..++--.|+. ..|+
T Consensus 137 L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~ 216 (439)
T KOG1498|consen 137 LAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYE 216 (439)
T ss_pred HHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHH
Confidence 444555667777766666543211 00 00000 01111345666667777766666665554444553 2356
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 008276 441 CLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
.++......+.+=.+-+.++.+
T Consensus 217 lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 217 LMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred HHHHhcccccchhhHHHHHHHH
Confidence 6666666666666666666655
No 465
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=41.26 E-value=1.8e+02 Score=28.72 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=28.1
Q ss_pred hCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276 461 QMPMEPN--ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501 (571)
Q Consensus 461 ~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 501 (571)
...+.|. ..+++.-+..+.+.+++..|-.+.+++++++|+.
T Consensus 291 hc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 291 HCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp CS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3355553 3356666777889999999999999999999854
No 466
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=40.83 E-value=2.4e+02 Score=27.64 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=59.4
Q ss_pred HCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHH--------HHhcCCHHHHHHHHhhCCC-
Q 008276 292 VHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM--------YAKCGSLTEARTVFDQMRC- 362 (571)
Q Consensus 292 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~- 362 (571)
...+.||.++.+.+...++..-..+-...+|+...+.+ .|-...+.+++-. -.+...-+++.++++.|..
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 45688999998888887777777888888888888876 4444444333321 1244567889999999875
Q ss_pred ---CChhHHHHHHHHHHh
Q 008276 363 ---QDVVSWTSMISAYGM 377 (571)
Q Consensus 363 ---~~~~~~~~li~~~~~ 377 (571)
.|+.-+..|.+.|+.
T Consensus 255 L~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYSD 272 (669)
T ss_pred cccccchhHHHHHHHHhh
Confidence 466677777777653
No 467
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=40.74 E-value=2.4e+02 Score=24.30 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=35.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhc-------C------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276 405 SVLSACSHAGLLEEGRYYFKIMTEQY-------K------LVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 405 ~l~~~~~~~~~~~~a~~~~~~~~~~~-------~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
+++-.|.+.-+|.++.++++.+.+.. | ..+.-...|.-++.+.+.|..|.|+.++++-
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 34555667777888888887775530 1 1122234556666777777777777777654
No 468
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.23 E-value=1.1e+02 Score=22.90 Aligned_cols=55 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCce
Q 008276 483 NMDIGILAADHIFHLA-PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA 539 (571)
Q Consensus 483 ~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 539 (571)
+...-++.++++...+ +.-|..+..|+..|.+.|+-+.|.+-|+. ++.+-|+.+.
T Consensus 52 Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet--EKalFPES~~ 107 (121)
T COG4259 52 QTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET--EKALFPESGV 107 (121)
T ss_pred HHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH--hhhhCccchh
No 469
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=40.16 E-value=2.5e+02 Score=24.39 Aligned_cols=62 Identities=10% Similarity=0.013 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHH
Q 008276 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMT 427 (571)
Q Consensus 365 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 427 (571)
....+.++..+...|+++.|.+.|.-+.... ..|.. .|..=+..+.+.+.-....+.++.+.
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 3457778888999999999999999888752 34544 33333444444444333334444443
No 470
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=40.14 E-value=2.7e+02 Score=24.86 Aligned_cols=122 Identities=14% Similarity=0.168 Sum_probs=61.8
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 008276 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349 (571)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 349 (571)
-+..|.+.-++.-|-....+..+ |= .+-.++ --|.+..+..-..++.+-....+++.+..-..+++ +...|+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiE----PI-QSRCAi-LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIE----PI-QSRCAI-LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhh----hH-HhhhHh-hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 34555555555555444444432 11 111111 22445554444444444444455555444444443 455677
Q ss_pred HHHHHHHHhhC----------------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008276 350 LTEARTVFDQM----------------RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400 (571)
Q Consensus 350 ~~~a~~~~~~~----------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 400 (571)
+.+|..-++.. -+|.+.....++..|. .+++++|.+++.++-+.|..|..
T Consensus 208 MRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 77776655433 2355555555555443 35667777777777776666543
No 471
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=39.81 E-value=3.7e+02 Score=26.31 Aligned_cols=52 Identities=23% Similarity=0.180 Sum_probs=39.3
Q ss_pred CChhhHHHHHHHHHHc---CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 008276 262 KNLVSWNVMIAVYANN---SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313 (571)
Q Consensus 262 ~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 313 (571)
.+-..+..+++++.++ .+.+.|+-++..|.+.|-.|-...-..++.++-..|
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 4555666777777654 689999999999999997787777766666665555
No 472
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=39.59 E-value=3.4e+02 Score=25.77 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=8.7
Q ss_pred cCCCHHHHHHHHHHHHH
Q 008276 412 HAGLLEEGRYYFKIMTE 428 (571)
Q Consensus 412 ~~~~~~~a~~~~~~~~~ 428 (571)
+.++.++|.++++++.+
T Consensus 87 ~~~D~~~al~~Le~i~~ 103 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIE 103 (380)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 33455555555555544
No 473
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.44 E-value=3.3e+02 Score=25.63 Aligned_cols=56 Identities=14% Similarity=0.026 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008276 338 NALVDMYAKCGSLTEARTVFDQMRC-QDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393 (571)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 393 (571)
..++....+.|+.+....+++.... ++......++.+++...+.+...++++....
T Consensus 173 ~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 173 WAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 3333344444443333333333332 2333344444444444444444444444444
No 474
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.00 E-value=5.7e+02 Score=28.21 Aligned_cols=59 Identities=8% Similarity=-0.013 Sum_probs=31.1
Q ss_pred hhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHH---HHHH---HhhcCCChHHHHHHHcccCC
Q 008276 31 GDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGL---KLMR---TYGACGQMVDTRHVFDEITN 92 (571)
Q Consensus 31 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~---~~~~~g~~~~A~~~~~~~~~ 92 (571)
+..-...+....++++|..+-+... .. .|...-+. .... -+...+++++|.+.|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~-~~--~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILD-SP--NPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccC-CC--ChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 4445555555666777766655333 21 11111111 1222 13356888888888887753
No 475
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.01 E-value=1e+02 Score=21.00 Aligned_cols=49 Identities=10% Similarity=0.059 Sum_probs=28.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 008276 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412 (571)
Q Consensus 363 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 412 (571)
|....++.++..+++..-.++++..+.++...|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4455566666666666666777777777766654 344555555554443
No 476
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=37.94 E-value=1.9e+02 Score=23.52 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=31.2
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 008276 388 FSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450 (571)
Q Consensus 388 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (571)
.+.+.+.|++++..- ..++..+...++.-.|..+++.+.+. +...+..|...-++.+...|
T Consensus 9 ~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCC
Confidence 344455555555543 23445555555556666666666654 33444444444455555555
No 477
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=37.75 E-value=1.6e+02 Score=21.35 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHH
Q 008276 47 LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114 (571)
Q Consensus 47 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 114 (571)
+..++..+. +.|+- +...... .-+...+.+.|.++++.++.+...+|..+..++-..|...-|
T Consensus 18 ~~~v~~~L~-~~~Vl-t~~~~e~---I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLL-SRGVF-TPDMIEE---IQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHH-hcCCC-CHHHHHH---HHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 345777777 66643 3222222 223446678888899988888888899988888887765444
No 478
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.74 E-value=3.5e+02 Score=25.34 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=31.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHc
Q 008276 285 DLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK 328 (571)
Q Consensus 285 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 328 (571)
++|+.|.+.++.|.-..|..+.-.+.+.=.+..+..+|+.+...
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD 307 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD 307 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC
Confidence 56777777777887777777666666666777777777777643
No 479
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.49 E-value=5.4e+02 Score=27.48 Aligned_cols=459 Identities=13% Similarity=0.043 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC-----CChhhHHHHHHHHHHcCChhHHHHHH
Q 008276 44 IKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN-----KNVVFFNVLIRSYVNNYLYYDALHVY 118 (571)
Q Consensus 44 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~ 118 (571)
..+.....+.+....+++-.......+=+.|--.|.+++|++.--.... ++...+..++.-|... -.+.+.+.+
T Consensus 39 Isd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~ 117 (929)
T KOG2062|consen 39 ISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETY 117 (929)
T ss_pred hhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHh
Q ss_pred HHHH-hCCCCCCcccH-HHHHHHhhcCCChHHHHHHHHHHHHhCC--------CCchhHHHHHHHHHHhCCC--------
Q 008276 119 KNMS-VHGFDPDCYTY-PCVLKACSGSNSLLVGLQIHCSVVKVGL--------DYNLFNGNGLVAMYGKCGC-------- 180 (571)
Q Consensus 119 ~~m~-~~g~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~g~--------~~~~~~~~~l~~~~~~~g~-------- 180 (571)
+.-. ..++.|-...+ ..++..|...+++..++-+.-+..+.++ ..+....+.++..+....+
T Consensus 118 ~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~v 197 (929)
T KOG2062|consen 118 KNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKV 197 (929)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCC
Q 008276 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD 260 (571)
Q Consensus 181 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~ 260 (571)
+....+.|..+++|| |-.+..++.-..+.+.+.++++++.+. ......|......+-...+.-+....+.+..-.
T Consensus 198 lr~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e--~~~llayQIAFDL~esasQefL~~v~~~l~~d~ 272 (929)
T KOG2062|consen 198 LRLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE--DDLLLAYQIAFDLYESASQEFLDSVLDRLPADD 272 (929)
T ss_pred HHHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc--chhhhHHHHHHHHhhccCHHHHHHHHHHccccc
Q ss_pred CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 008276 261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL 340 (571)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 340 (571)
..+......++..+. -+...+++.+..-+.-..|.......-.+. +..-...|.-+-+.+...| ..+...+..=
T Consensus 273 ~~de~p~~kii~ILS----Ge~tik~~l~FL~~~N~tD~~iL~~iK~s~-r~sv~H~A~~iAN~fMh~G-TT~D~FlR~N 346 (929)
T KOG2062|consen 273 ARDEKPMEKIISILS----GEETIKLYLQFLLRHNNTDLLILEEIKESV-RNSVCHTATLIANAFMHAG-TTSDTFLRNN 346 (929)
T ss_pred ccccChHHHHHHHhc----CchHHHHHHHHHHHcCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhcC-CcchHHHHhc
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhhcCCCHH
Q 008276 341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI---AFVSVLSACSHAGLLE 417 (571)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~~~~~ 417 (571)
+..+.+..+|.+--..-.- +..+.|+..+|.+++.--+-..-.|... -=..+.-++.+.|...
T Consensus 347 L~WlskAtNWaKFtAtAsL--------------GvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~ 412 (929)
T KOG2062|consen 347 LDWLSKATNWAKFTATASL--------------GVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGR 412 (929)
T ss_pred hhHHhhcchHhhhhhhhhc--------------ceeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCc
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008276 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK-----VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAAD 492 (571)
Q Consensus 418 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 492 (571)
...+++....+. .-.+...+-.+|.-.+...|. ++...+++..=.---....--.+.-...-..+.+.-..++.
T Consensus 413 ~~~~yL~~~Lk~-~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~ 491 (929)
T KOG2062|consen 413 GITDYLLQQLKT-AENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLT 491 (929)
T ss_pred cHHHHHHHHHHh-ccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHH
Q ss_pred HHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 493 HIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 493 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
-+.+..-....=-..++-++.--|+-++|..++++|.
T Consensus 492 Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~ 528 (929)
T KOG2062|consen 492 YAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELL 528 (929)
T ss_pred HhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHh
No 480
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.08 E-value=4.1e+02 Score=25.99 Aligned_cols=61 Identities=10% Similarity=-0.039 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI--EHFACLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
..+.+++.|...+.++.|..+..+..--.....+. ..+.-+.....-++++..|.+.|-.+
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa 273 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQA 273 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHH
Confidence 45566666777777777776665542100000001 11112233334456677777766555
No 481
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.07 E-value=3.4e+02 Score=25.05 Aligned_cols=122 Identities=14% Similarity=0.079 Sum_probs=62.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCcccH-------HHHHHHhhcCCChHHHHHHHHHHHH----hCCCCchhHHH
Q 008276 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY-------PCVLKACSGSNSLLVGLQIHCSVVK----VGLDYNLFNGN 169 (571)
Q Consensus 101 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-------~~li~~~~~~~~~~~a~~~~~~~~~----~g~~~~~~~~~ 169 (571)
+.+...+.+++++|+..+.+....|+..|..+. .-+...|...|+...-.+....... -.-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 445566777888888888888877776665543 3344556666665443333222211 11111222333
Q ss_pred HHHHHHHh-CCCHHHHHHHHccCCC----CC-----chhHHHHHHHHHhCCCchHHHHHHHHH
Q 008276 170 GLVAMYGK-CGCLKEARRVLNDMPS----KD-----VVTWNSMVAGYAQNGRFDEALDVCREM 222 (571)
Q Consensus 170 ~l~~~~~~-~g~~~~A~~~~~~~~~----~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m 222 (571)
+|+..+-. ...++..+.+.....+ .. ...-.-++..+.+.|.+.+|+.+...+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34433322 2234444444333322 00 111234677788888888888776554
No 482
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=37.00 E-value=1.7e+02 Score=30.39 Aligned_cols=70 Identities=16% Similarity=0.325 Sum_probs=35.7
Q ss_pred HHHHHhhcCCChHHHHHHHcccCCCC------hhhHHHHHHHHHHcCChh------HHHHHHHHHHhCCCCCCcccHHHH
Q 008276 69 KLMRTYGACGQMVDTRHVFDEITNKN------VVFFNVLIRSYVNNYLYY------DALHVYKNMSVHGFDPDCYTYPCV 136 (571)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~------~A~~~~~~m~~~g~~p~~~~~~~l 136 (571)
+|+.+|...|++-.+.++++.....+ ...||..|+...+.|+++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 55666666666666666655543311 224555566666666543 2333333333 33455666655
Q ss_pred HHHhh
Q 008276 137 LKACS 141 (571)
Q Consensus 137 i~~~~ 141 (571)
+.+..
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 55543
No 483
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.84 E-value=2e+02 Score=30.00 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=34.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHhCCCCCCHHHHHHHHHH
Q 008276 405 SVLSACSHAGLLEEGRYYFKIMTEQY-KLVPRIEHFACLVDLLGRAGKVE------EAYDLIKQMPMEPNERIWGSLVAA 477 (571)
Q Consensus 405 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~p~~~~~~~l~~~ 477 (571)
+++.+|...|++..+.++++...... +-..-...+|..++.+.+.|.++ .|.+.+++..+.-|..||..+..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 45555555555555555555544321 11111234455555555555432 344444444444455555555544
Q ss_pred HH
Q 008276 478 CC 479 (571)
Q Consensus 478 ~~ 479 (571)
-.
T Consensus 113 sl 114 (1117)
T COG5108 113 SL 114 (1117)
T ss_pred hc
Confidence 33
No 484
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=36.64 E-value=3.2e+02 Score=25.24 Aligned_cols=115 Identities=11% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcC--------CCCCHHHHHHHHHHH-HhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHH
Q 008276 417 EEGRYYFKIMTEQYK--------LVPRIEHFACLVDLL-GRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDI 486 (571)
Q Consensus 417 ~~a~~~~~~~~~~~~--------~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~ 486 (571)
.....+++-+.+. + +.-|...++.|+.-- .+...++++++-.++- |......+|..+...|++-+|.+.
T Consensus 55 ~~maplYkyL~E~-~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~n 133 (412)
T COG5187 55 KCMAPLYKYLAEK-GNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQN 133 (412)
T ss_pred hhhhHHHHHHHhc-cCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhh
Q ss_pred HHHHHHHHHh------hCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 487 GILAADHIFH------LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 487 A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
+.+...+..+ ..-+-.-.-..++-.|....-.++-++..+.|.++|
T Consensus 134 g~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 134 GFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
No 485
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.42 E-value=1.6e+02 Score=28.89 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHc
Q 008276 198 TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277 (571)
Q Consensus 198 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (571)
+.-.|++..+-.||+..|+++++.+.- +. ..++.++....+.+|.-+.-+|.-.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl-----~~---------------------~~l~~~V~~~~is~~YyvGFaylMl 177 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDL-----NK---------------------KGLYTKVPACHISTYYYVGFAYLML 177 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCc-----cc---------------------chhhccCcchheehHHHHHHHHHHH
Confidence 345577888999999999999877632 11 1134444444566778888899999
Q ss_pred CCchHHHHHHHHHH
Q 008276 278 SMPAEAVDLYLQME 291 (571)
Q Consensus 278 g~~~~A~~~~~~m~ 291 (571)
+++.+|.+.|....
T Consensus 178 rRY~DAir~f~~iL 191 (404)
T PF10255_consen 178 RRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
No 486
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=35.09 E-value=3.7e+02 Score=24.87 Aligned_cols=48 Identities=6% Similarity=-0.083 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC---------------CHHHHHHHHHHHHhCCC
Q 008276 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG---------------RWGDVKRVRKFMNSKGI 533 (571)
Q Consensus 483 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~~~ 533 (571)
+.++|...|+++.+.+. ......+. .+...| +...|...+......+.
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 55566666666655554 33333333 333333 55566666666555543
No 487
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=34.97 E-value=1.1e+02 Score=31.93 Aligned_cols=244 Identities=11% Similarity=0.036 Sum_probs=0.0
Q ss_pred CCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHH-HHHHHHccCCCCCchhHHHHHHH
Q 008276 127 DPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK-EARRVLNDMPSKDVVTWNSMVAG 205 (571)
Q Consensus 127 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~li~~ 205 (571)
++|...-.-.+-...-.|+...+++....+ ..+..+-..+.+.+...|-++ .-..-+....-++.....-.-..
T Consensus 294 ~~~~~~~~e~~~~~i~~~d~~~vL~~~~~~-----~~~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ll~YA~~L 368 (566)
T PF07575_consen 294 PPDSTNPLEQILLAIFEGDIESVLKEISSL-----FDDWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREYLLLEYASSL 368 (566)
T ss_dssp ---TTSTTHHHHHHHHTS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS--SS-----TS-HHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHccCHHHHHHHHHHH-----ccchhHHHHHHHHHHhcCccccccccccccccHHHHHHHHHHHHH
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHH
Q 008276 206 YAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVD 285 (571)
Q Consensus 206 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 285 (571)
+...+-++-|..++......| ......++.+.+-.+...-.-++..|.+.|-.+.|..
T Consensus 369 ~s~~~lW~vai~yL~~c~~~g----------------------~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~ 426 (566)
T PF07575_consen 369 MSHHSLWQVAIGYLSSCPDEG----------------------RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVARE 426 (566)
T ss_dssp HT-TTTHHHHHHHHHS-SSS-----------------------HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHH
T ss_pred hcCcchHHHHHHHHHHCChhh----------------------HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHH
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh
Q 008276 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV 365 (571)
Q Consensus 286 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 365 (571)
+.+.+-.. .....-|..-+.-+.+.|+...+..+-..+.+.....+......+++...... +..+..
T Consensus 427 I~~~~~~~--~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~-----------~~~~~L 493 (566)
T PF07575_consen 427 ICKILGQR--LLKEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPM-----------LLSQRL 493 (566)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred HHHHHHHH--HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchh-----------hhhhhh
Q ss_pred hHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 008276 366 VSWTSMISAY--GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410 (571)
Q Consensus 366 ~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 410 (571)
..|..+-+.| .+.+++.+|.+.+-.+...+..|...-...|.++.
T Consensus 494 ~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 494 SFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
No 488
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.77 E-value=3.3e+02 Score=24.19 Aligned_cols=104 Identities=11% Similarity=0.084 Sum_probs=53.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHh
Q 008276 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP---RIEHF--ACLVDLLGRAGKVEEAYDLIKQ 461 (571)
Q Consensus 387 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~A~~~~~~ 461 (571)
..+++.. +.+...-++.|+--|.-...+.+|...|..-. ++.| +...+ ..-|......|+.++|.+....
T Consensus 15 w~~~~~~--~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~ 89 (228)
T KOG2659|consen 15 WEEQLMK--VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQ 89 (228)
T ss_pred hHHHHhc--cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHH
Confidence 3344444 45555556666555555555555555554432 4444 22222 2345566777888888887777
Q ss_pred C-C--CCCCH--HHHHHHHHH--HHhcCCHHHHHHHHHHHH
Q 008276 462 M-P--MEPNE--RIWGSLVAA--CCLYSNMDIGILAADHIF 495 (571)
Q Consensus 462 ~-~--~~p~~--~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 495 (571)
+ + +.-|. ..+...... ..+.|..++|+++.+.-+
T Consensus 90 l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 90 LNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 6 1 22222 222222222 346677777777776433
No 489
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=34.53 E-value=88 Score=21.71 Aligned_cols=34 Identities=9% Similarity=0.119 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCC
Q 008276 43 DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACG 78 (571)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 78 (571)
+.+.|.+++..+. ..-..++..||++.+.+.++.
T Consensus 12 DtEmA~~mL~DLr--~dekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 12 DTEMAQQMLADLR--DDEKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHhc--chhhcChHHHHHHHHHHHHcc
Confidence 5677888888876 344568888888888777653
No 490
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=34.53 E-value=1.9e+02 Score=22.94 Aligned_cols=39 Identities=3% Similarity=-0.041 Sum_probs=29.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 008276 477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515 (571)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 515 (571)
.+...-+.+.|.++|+++++..|++..++..++..+-..
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS~ 123 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDSP 123 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCcH
Confidence 334455778999999999999999999999998876553
No 491
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=34.37 E-value=3.4e+02 Score=30.88 Aligned_cols=121 Identities=12% Similarity=0.099 Sum_probs=79.5
Q ss_pred HhhcCCCHHHHHH------HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCC-C-CHHHHH
Q 008276 409 ACSHAGLLEEGRY------YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--------PME-P-NERIWG 472 (571)
Q Consensus 409 ~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~-p-~~~~~~ 472 (571)
.....|.+.++.+ ++...... -.++....|..+...+.+.|+.++|+..-.+. +.. | +...|.
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~-~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGV-LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhh-cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 3444566666666 44432221 11333467888888999999999998887665 222 2 344566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC--------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 473 SLVAACCLYSNMDIGILAADHIFHLA--------PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
.+.-.+...++...|...+.++..+. |+-......+...+...++++.|+++++....
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 66656666778888888888877632 44444556666666777999999999988865
No 492
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.24 E-value=1.9e+02 Score=24.40 Aligned_cols=60 Identities=13% Similarity=0.023 Sum_probs=33.0
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 008276 391 MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV 452 (571)
Q Consensus 391 m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (571)
+.+.|++++..-. .++..+...++.-.|.++++.+.+. +...+..|..--++.+...|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCE
Confidence 3455666555533 3334444445556677777777665 4445555444455666666643
No 493
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=34.01 E-value=1.5e+02 Score=21.13 Aligned_cols=12 Identities=8% Similarity=0.290 Sum_probs=4.8
Q ss_pred CCChHHHHHHHc
Q 008276 77 CGQMVDTRHVFD 88 (571)
Q Consensus 77 ~g~~~~A~~~~~ 88 (571)
.|+++-...+++
T Consensus 7 ~~~~~~~~~ll~ 18 (89)
T PF12796_consen 7 NGNLEILKFLLE 18 (89)
T ss_dssp TTTHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 344444444333
No 494
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=33.78 E-value=88 Score=21.29 Aligned_cols=48 Identities=6% Similarity=-0.049 Sum_probs=32.3
Q ss_pred CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 008276 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310 (571)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 310 (571)
+....++.++..+++..-.+.++..+.++...|. .+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 4456677777887777778888888888888773 55566655554443
No 495
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=33.75 E-value=6.5e+02 Score=27.35 Aligned_cols=18 Identities=11% Similarity=0.482 Sum_probs=14.5
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 008276 512 YAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~ 529 (571)
..+.|++++|+++++.+.
T Consensus 717 ~y~~~~~e~aL~~le~l~ 734 (835)
T KOG2168|consen 717 LYHNGEWEEALSILEHLD 734 (835)
T ss_pred HHhhhHHHHHHHHHHHHh
Confidence 456789999999988764
No 496
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=32.90 E-value=3.4e+02 Score=23.92 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHCCCCC----CHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 008276 382 YDAVALFSKMLMSGLCP----DSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431 (571)
Q Consensus 382 ~~a~~~~~~m~~~g~~p----~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 431 (571)
..|.+.|.+..+..-.| +.. ....+.....+.|+.++|.+.|.++....+
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 45666666665543222 222 333344556678888888888888877633
No 497
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.80 E-value=7e+02 Score=27.38 Aligned_cols=130 Identities=15% Similarity=0.086 Sum_probs=88.2
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHH
Q 008276 343 MYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422 (571)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 422 (571)
....+|+++.|.+.-..+- +..+|..|...-...|+.+-|+..|++... |..|--.|.-.|+.++-.+.
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3456788888888776664 556799999999999999999988887554 44444456777888887777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (571)
.+.+..+ .|... ....-.-.|+.++-.++++..+..|- .|. ....+|.-++|.++.++..+
T Consensus 721 ~~iae~r----~D~~~---~~qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAEIR----NDATG---QFQNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHhh----hhhHH---HHHHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 6666432 23321 11111236889999999998864441 121 12357888888888888776
No 498
>PRK13342 recombination factor protein RarA; Reviewed
Probab=32.74 E-value=5e+02 Score=25.73 Aligned_cols=99 Identities=15% Similarity=0.039 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHH
Q 008276 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR---CQDVVSWTSMI 372 (571)
Q Consensus 296 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li 372 (571)
..+......++..+ .|+...+..+++.+...+...+.. ...+++.... ..+...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~----------------~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITLE----------------LLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHH----------------HHHHHHhhhhhccCCCccHHHHHH
Confidence 44555555554433 677777777777665432112221 1122222111 11222233444
Q ss_pred HHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 008276 373 SAYGM---SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412 (571)
Q Consensus 373 ~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 412 (571)
.++.+ ..+.+.|+.++..|.+.|..|....-..+..++..
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 44443 57889999999999998877765554444444333
No 499
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=31.54 E-value=2.6e+02 Score=22.10 Aligned_cols=57 Identities=16% Similarity=0.062 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHH
Q 008276 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG-SLVAACCLYSNMDIGILAADH 493 (571)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~ 493 (571)
.+..+++-++.-.|..++|.+++...+-.++-...| .++..|.+..+.++..++-++
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444566666677777777777777764333333332 356666666666555554443
No 500
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=31.52 E-value=84 Score=29.13 Aligned_cols=72 Identities=7% Similarity=0.004 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceE
Q 008276 465 EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL-LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540 (571)
Q Consensus 465 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 540 (571)
..|+..|...+..-.+.|-+.+.-.++.++....|.+...|.. -..-+...++++.++.++.. |++-+|..+
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~----glR~N~~~p 176 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLK----GLRMNSRSP 176 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHh----hhccCCCCc
Confidence 3477888888877777889999999999999999999998886 44456778999999888864 555555544
Done!