Query 008276
Match_columns 571
No_of_seqs 618 out of 3209
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 22:22:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.3E-40 3.2E-44 340.0 41.3 447 73-532 62-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.6E-38 5.3E-43 330.8 40.7 447 26-513 82-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.5E-28 2.6E-32 236.0 41.1 374 101-517 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-26 4.2E-31 227.4 39.2 355 137-532 6-369 (388)
5 4g26_A Pentatricopeptide repea 100.0 5.2E-28 1.8E-32 240.8 22.9 184 265-449 27-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 2.5E-27 8.4E-32 236.0 20.5 134 97-230 28-174 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.3E-24 4.3E-29 221.5 33.5 264 264-532 186-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 9.6E-24 3.3E-28 214.9 35.7 446 30-508 8-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 6.7E-23 2.3E-27 210.0 34.9 418 97-530 27-490 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1E-22 3.4E-27 203.7 30.8 326 163-527 24-405 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 2.9E-22 1E-26 200.4 33.3 358 134-521 30-444 (450)
12 3fp2_A TPR repeat-containing p 99.9 5.2E-22 1.8E-26 203.3 34.4 442 27-507 24-501 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 2.5E-19 8.6E-24 173.0 32.4 310 166-514 4-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 3E-19 1E-23 172.5 32.3 300 195-532 2-336 (359)
15 3hym_B Cell division cycle pro 99.8 2.4E-18 8.1E-23 164.1 29.6 288 195-519 21-322 (330)
16 3hym_B Cell division cycle pro 99.8 2.4E-18 8.2E-23 164.1 28.3 266 262-532 20-300 (330)
17 2xm6_A Protein corresponding t 99.8 1.1E-16 3.7E-21 161.4 40.8 366 94-514 38-452 (490)
18 1fch_A Peroxisomal targeting s 99.8 8.7E-19 3E-23 170.0 22.2 298 175-528 35-356 (368)
19 1xi4_A Clathrin heavy chain; a 99.8 4.6E-15 1.6E-19 156.8 49.5 452 26-526 837-1340(1630)
20 2xm6_A Protein corresponding t 99.8 7.7E-16 2.6E-20 155.2 42.5 362 114-532 26-433 (490)
21 1xi4_A Clathrin heavy chain; a 99.8 6.8E-15 2.3E-19 155.5 49.2 412 22-482 979-1415(1630)
22 1b89_A Protein (clathrin heavy 99.8 5E-18 1.7E-22 161.0 23.1 291 34-359 9-307 (449)
23 2ooe_A Cleavage stimulation fa 99.8 4.6E-16 1.6E-20 158.5 38.2 410 94-532 12-493 (530)
24 4eqf_A PEX5-related protein; a 99.8 3.6E-18 1.2E-22 165.5 20.9 261 263-527 64-352 (365)
25 2ooe_A Cleavage stimulation fa 99.8 4.2E-16 1.4E-20 158.8 36.1 403 63-500 12-495 (530)
26 3cv0_A Peroxisome targeting si 99.8 1.5E-17 5.1E-22 158.3 21.6 262 263-529 20-313 (327)
27 3mkr_A Coatomer subunit epsilo 99.8 1.2E-16 3.9E-21 148.7 25.8 246 266-525 36-288 (291)
28 4g1t_A Interferon-induced prot 99.8 1.8E-16 6.3E-21 159.2 28.4 230 278-533 227-461 (472)
29 1b89_A Protein (clathrin heavy 99.8 1.2E-16 4.2E-21 151.5 24.8 280 76-387 15-304 (449)
30 1fch_A Peroxisomal targeting s 99.8 3.9E-17 1.3E-21 158.3 21.7 299 139-496 34-358 (368)
31 3mkr_A Coatomer subunit epsilo 99.8 7.8E-17 2.7E-21 149.8 21.5 247 271-532 6-265 (291)
32 4eqf_A PEX5-related protein; a 99.7 1.1E-16 3.7E-21 155.0 21.9 232 298-532 64-311 (365)
33 4g1t_A Interferon-induced prot 99.7 3.4E-15 1.2E-19 150.0 29.0 384 62-509 49-471 (472)
34 3cv0_A Peroxisome targeting si 99.7 2.4E-16 8.2E-21 149.9 18.3 271 167-497 23-315 (327)
35 3uq3_A Heat shock protein STI1 99.7 4.2E-15 1.4E-19 136.0 22.6 228 264-531 5-236 (258)
36 2pl2_A Hypothetical conserved 99.7 2.1E-15 7.1E-20 133.9 18.9 195 331-529 2-212 (217)
37 3uq3_A Heat shock protein STI1 99.7 3.2E-15 1.1E-19 136.8 20.1 234 232-511 6-256 (258)
38 3spa_A Mtrpol, DNA-directed RN 99.6 6.2E-17 2.1E-21 165.7 5.8 148 63-210 126-286 (1134)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 9.2E-15 3.2E-19 135.2 19.4 241 276-525 17-269 (275)
40 3u4t_A TPR repeat-containing p 99.6 1.8E-14 6E-19 133.1 21.3 248 264-516 3-269 (272)
41 3spa_A Mtrpol, DNA-directed RN 99.6 5.6E-16 1.9E-20 158.7 8.8 127 331-458 124-258 (1134)
42 3e4b_A ALGK; tetratricopeptide 99.6 1.4E-13 4.7E-18 136.6 25.5 378 101-531 9-421 (452)
43 3e4b_A ALGK; tetratricopeptide 99.6 2.1E-13 7E-18 135.3 26.4 343 32-429 7-387 (452)
44 2h6f_A Protein farnesyltransfe 99.6 6.5E-14 2.2E-18 134.5 20.6 246 264-515 97-366 (382)
45 2ho1_A Type 4 fimbrial biogene 99.6 4.4E-13 1.5E-17 122.1 24.2 138 366-505 106-246 (252)
46 2q7f_A YRRB protein; TPR, prot 99.6 4.9E-14 1.7E-18 127.6 17.3 144 365-511 91-236 (243)
47 2vq2_A PILW, putative fimbrial 99.6 3.2E-13 1.1E-17 120.5 22.1 196 334-531 8-211 (225)
48 1ouv_A Conserved hypothetical 99.6 1.1E-12 3.8E-17 121.0 26.3 224 263-500 5-254 (273)
49 3vtx_A MAMA; tetratricopeptide 99.6 1.9E-13 6.7E-18 117.8 19.8 165 364-532 4-171 (184)
50 2pl2_A Hypothetical conserved 99.6 1.2E-13 4E-18 122.6 18.8 206 262-494 3-211 (217)
51 2ho1_A Type 4 fimbrial biogene 99.6 2.3E-13 7.8E-18 124.0 21.2 197 334-532 37-239 (252)
52 1ouv_A Conserved hypothetical 99.6 1.3E-12 4.5E-17 120.5 26.4 224 298-533 5-253 (273)
53 2q7f_A YRRB protein; TPR, prot 99.6 9.1E-14 3.1E-18 125.8 17.7 197 333-532 22-223 (243)
54 2h6f_A Protein farnesyltransfe 99.6 1.1E-13 3.8E-18 132.9 18.9 228 299-532 97-349 (382)
55 3sf4_A G-protein-signaling mod 99.6 2.1E-13 7.1E-18 133.8 21.2 267 263-530 8-335 (406)
56 2vq2_A PILW, putative fimbrial 99.6 9.4E-13 3.2E-17 117.4 23.6 208 263-508 7-222 (225)
57 3u4t_A TPR repeat-containing p 99.6 2.2E-13 7.7E-18 125.6 19.9 228 301-532 5-251 (272)
58 4a1s_A PINS, partner of inscut 99.6 5.5E-14 1.9E-18 138.3 16.5 266 265-531 49-372 (411)
59 3ro2_A PINS homolog, G-protein 99.5 3.1E-13 1E-17 128.7 19.7 265 266-531 7-332 (338)
60 4abn_A Tetratricopeptide repea 99.5 8.8E-14 3E-18 138.9 16.3 207 316-527 85-317 (474)
61 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.6E-13 1.2E-17 124.4 18.9 245 208-491 17-269 (275)
62 4e6h_A MRNA 3'-END-processing 99.5 5.9E-11 2E-15 121.7 35.7 441 43-503 47-576 (679)
63 3sf4_A G-protein-signaling mod 99.5 3.4E-13 1.2E-17 132.2 16.7 171 350-520 163-365 (406)
64 4a1s_A PINS, partner of inscut 99.5 1E-12 3.5E-17 129.2 16.5 271 199-499 51-374 (411)
65 4gyw_A UDP-N-acetylglucosamine 99.4 2E-12 6.7E-17 134.2 17.9 162 365-530 9-173 (723)
66 3vtx_A MAMA; tetratricopeptide 99.4 3.4E-12 1.1E-16 109.9 16.6 167 333-502 4-175 (184)
67 3ulq_A Response regulator aspa 99.4 3.8E-12 1.3E-16 123.8 18.0 235 270-530 109-367 (383)
68 2ond_A Cleavage stimulation fa 99.4 5.9E-11 2E-15 111.4 25.2 219 281-503 33-276 (308)
69 3ro2_A PINS homolog, G-protein 99.4 4.2E-12 1.4E-16 120.7 17.4 235 266-500 45-335 (338)
70 4e6h_A MRNA 3'-END-processing 99.4 4.7E-10 1.6E-14 115.0 33.2 418 93-533 64-572 (679)
71 2ond_A Cleavage stimulation fa 99.4 1.7E-11 5.9E-16 115.1 20.6 213 316-533 33-272 (308)
72 3as5_A MAMA; tetratricopeptide 99.4 1.7E-11 6E-16 105.3 18.7 163 367-532 10-174 (186)
73 3nf1_A KLC 1, kinesin light ch 99.4 6.1E-13 2.1E-17 125.2 9.9 237 263-530 26-306 (311)
74 1hz4_A MALT regulatory protein 99.4 3.5E-10 1.2E-14 109.4 28.2 264 267-530 17-321 (373)
75 3ulq_A Response regulator aspa 99.4 1.5E-11 5.1E-16 119.6 17.7 189 340-528 109-332 (383)
76 3nf1_A KLC 1, kinesin light ch 99.4 1.7E-12 5.9E-17 122.1 9.7 238 231-500 27-310 (311)
77 4i17_A Hypothetical protein; T 99.3 2.9E-11 1E-15 108.1 17.0 188 334-532 7-210 (228)
78 4i17_A Hypothetical protein; T 99.3 8.6E-11 2.9E-15 105.0 19.7 204 297-512 5-224 (228)
79 4abn_A Tetratricopeptide repea 99.3 2.9E-11 9.8E-16 120.7 17.6 209 280-494 84-318 (474)
80 3q15_A PSP28, response regulat 99.3 1.1E-10 3.8E-15 113.1 20.7 161 267-428 104-289 (378)
81 3as5_A MAMA; tetratricopeptide 99.3 1.6E-10 5.5E-15 99.2 19.3 168 334-504 8-180 (186)
82 3q15_A PSP28, response regulat 99.3 2.7E-10 9.1E-15 110.4 20.3 225 305-530 107-364 (378)
83 3edt_B KLC 2, kinesin light ch 99.2 2.3E-10 7.7E-15 105.7 15.4 222 310-531 12-281 (283)
84 1hz4_A MALT regulatory protein 99.2 6.3E-09 2.2E-13 100.5 25.5 193 170-392 58-280 (373)
85 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.2E-09 7.7E-14 95.4 20.2 62 473-534 152-216 (225)
86 3mv2_B Coatomer subunit epsilo 99.2 4.9E-09 1.7E-13 95.4 22.3 175 353-532 85-283 (310)
87 4gyw_A UDP-N-acetylglucosamine 99.2 1.8E-10 6.2E-15 119.6 14.5 162 333-498 8-175 (723)
88 1qqe_A Vesicular transport pro 99.2 7.1E-10 2.4E-14 103.1 17.3 171 336-508 79-280 (292)
89 4ga2_A E3 SUMO-protein ligase 99.2 6.5E-11 2.2E-15 97.7 8.1 142 372-517 4-149 (150)
90 3qky_A Outer membrane assembly 99.1 1.7E-09 5.7E-14 98.8 17.7 188 333-520 14-250 (261)
91 2fo7_A Synthetic consensus TPR 99.1 1.8E-09 6.3E-14 86.9 15.7 128 403-532 4-133 (136)
92 3qky_A Outer membrane assembly 99.1 1.9E-09 6.4E-14 98.4 17.6 168 363-532 13-225 (261)
93 1qqe_A Vesicular transport pro 99.1 5.8E-10 2E-14 103.6 13.9 228 282-529 3-267 (292)
94 3edt_B KLC 2, kinesin light ch 99.1 3.2E-09 1.1E-13 97.9 17.9 206 264-497 43-281 (283)
95 2pzi_A Probable serine/threoni 99.1 4.8E-10 1.6E-14 117.0 11.8 144 366-514 434-580 (681)
96 3qou_A Protein YBBN; thioredox 99.1 2.9E-09 9.9E-14 98.5 15.7 174 351-529 103-282 (287)
97 2fo7_A Synthetic consensus TPR 99.0 8.9E-09 3.1E-13 82.8 16.1 131 367-500 3-135 (136)
98 3mv2_B Coatomer subunit epsilo 99.0 9.2E-09 3.1E-13 93.6 16.8 215 270-506 51-291 (310)
99 2vsy_A XCC0866; transferase, g 99.0 4.1E-09 1.4E-13 108.1 15.8 159 347-509 2-169 (568)
100 3rjv_A Putative SEL1 repeat pr 99.0 3.1E-08 1E-12 87.0 19.3 162 363-533 16-199 (212)
101 2ifu_A Gamma-SNAP; membrane fu 99.0 1.2E-08 4.2E-13 95.4 16.5 219 277-524 4-254 (307)
102 4ga2_A E3 SUMO-protein ligase 99.0 6E-10 2E-14 91.9 6.5 123 406-531 3-129 (150)
103 3gyz_A Chaperone protein IPGC; 99.0 4E-09 1.4E-13 86.5 11.3 97 436-532 36-134 (151)
104 2r5s_A Uncharacterized protein 99.0 4.3E-09 1.5E-13 89.5 11.8 157 369-530 10-172 (176)
105 4gco_A Protein STI-1; structur 99.0 6.1E-09 2.1E-13 82.7 11.8 108 402-511 15-124 (126)
106 3urz_A Uncharacterized protein 98.9 2E-08 6.7E-13 88.0 15.3 128 369-501 58-190 (208)
107 2pzi_A Probable serine/threoni 98.9 3.5E-08 1.2E-12 103.0 19.3 188 310-503 402-608 (681)
108 2vsy_A XCC0866; transferase, g 98.9 1.9E-08 6.5E-13 103.1 16.8 146 312-462 2-154 (568)
109 3urz_A Uncharacterized protein 98.9 2.7E-08 9.3E-13 87.1 14.8 159 369-532 8-187 (208)
110 3dra_A Protein farnesyltransfe 98.9 2.4E-07 8.3E-12 85.2 21.4 230 275-509 43-300 (306)
111 2ifu_A Gamma-SNAP; membrane fu 98.9 8.9E-09 3.1E-13 96.4 12.1 197 311-529 3-222 (307)
112 4gco_A Protein STI-1; structur 98.9 1.2E-08 4.2E-13 80.9 11.1 101 432-532 8-111 (126)
113 3u3w_A Transcriptional activat 98.9 5.2E-07 1.8E-11 83.7 24.0 160 370-529 80-264 (293)
114 2vgx_A Chaperone SYCD; alterna 98.9 5.7E-09 1.9E-13 85.7 8.6 91 439-529 24-116 (148)
115 2uy1_A Cleavage stimulation fa 98.9 4.4E-07 1.5E-11 90.3 23.9 376 40-496 6-412 (493)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.9 6.6E-08 2.3E-12 84.9 15.9 128 367-500 8-153 (213)
117 3dra_A Protein farnesyltransfe 98.9 1.7E-06 5.7E-11 79.6 25.5 213 314-530 48-286 (306)
118 2r5s_A Uncharacterized protein 98.9 3.5E-08 1.2E-12 83.7 13.4 156 337-496 9-172 (176)
119 2yhc_A BAMD, UPF0169 lipoprote 98.9 4.6E-08 1.6E-12 86.8 14.6 187 301-504 6-220 (225)
120 2qfc_A PLCR protein; TPR, HTH, 98.8 1.2E-07 4.1E-12 88.0 17.2 162 368-529 78-264 (293)
121 1a17_A Serine/threonine protei 98.8 9.4E-08 3.2E-12 80.0 14.9 126 402-529 15-144 (166)
122 3qou_A Protein YBBN; thioredox 98.8 2.1E-07 7.3E-12 85.9 18.3 161 298-461 116-280 (287)
123 1na0_A Designed protein CTPR3; 98.8 1.9E-07 6.4E-12 73.7 14.3 115 400-516 9-125 (125)
124 2e2e_A Formate-dependent nitri 98.8 3.4E-08 1.2E-12 84.0 10.3 126 376-504 21-151 (177)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.8E-07 1.6E-11 79.3 18.1 131 337-468 9-154 (213)
126 2vyi_A SGTA protein; chaperone 98.8 1.3E-07 4.5E-12 75.3 13.1 117 400-518 12-130 (131)
127 1p5q_A FKBP52, FK506-binding p 98.8 8.4E-08 2.9E-12 90.8 13.6 94 436-529 196-292 (336)
128 2xcb_A PCRH, regulatory protei 98.8 7.5E-08 2.6E-12 78.4 11.4 103 402-506 20-124 (142)
129 2lni_A Stress-induced-phosphop 98.7 1.3E-07 4.5E-12 75.7 12.8 116 400-517 16-133 (133)
130 3gyz_A Chaperone protein IPGC; 98.7 1.3E-07 4.6E-12 77.3 12.5 105 396-502 31-138 (151)
131 3rjv_A Putative SEL1 repeat pr 98.7 2.2E-06 7.5E-11 75.0 21.2 158 263-429 17-197 (212)
132 2vgx_A Chaperone SYCD; alterna 98.7 4.7E-08 1.6E-12 80.1 9.7 118 387-508 9-129 (148)
133 3upv_A Heat shock protein STI1 98.7 8.6E-08 3E-12 76.1 11.0 91 439-529 7-99 (126)
134 2uy1_A Cleavage stimulation fa 98.7 2.6E-06 9E-11 84.7 23.1 337 179-530 28-412 (493)
135 2c2l_A CHIP, carboxy terminus 98.7 3.6E-08 1.2E-12 90.7 8.5 189 333-531 3-199 (281)
136 1hxi_A PEX5, peroxisome target 98.7 8.9E-08 3.1E-12 75.3 9.5 94 439-532 20-115 (121)
137 2qfc_A PLCR protein; TPR, HTH, 98.7 1.2E-06 4.1E-11 81.2 18.5 164 335-498 76-267 (293)
138 3u3w_A Transcriptional activat 98.7 4.3E-06 1.5E-10 77.4 22.1 204 286-498 33-267 (293)
139 2xcb_A PCRH, regulatory protei 98.6 9E-08 3.1E-12 77.9 9.0 96 436-531 18-115 (142)
140 3sz7_A HSC70 cochaperone (SGT) 98.6 1.9E-07 6.4E-12 78.1 10.9 110 399-510 10-121 (164)
141 3q49_B STIP1 homology and U bo 98.6 3.5E-07 1.2E-11 73.7 12.1 94 436-529 9-104 (137)
142 4f3v_A ESX-1 secretion system 98.6 1.7E-07 5.7E-12 84.2 10.8 124 406-532 108-238 (282)
143 2fbn_A 70 kDa peptidylprolyl i 98.6 2.9E-07 9.9E-12 79.8 12.2 96 437-532 89-187 (198)
144 2kck_A TPR repeat; tetratricop 98.6 2.2E-07 7.7E-12 71.6 10.1 98 436-533 6-108 (112)
145 3upv_A Heat shock protein STI1 98.6 3.9E-07 1.3E-11 72.2 11.6 111 401-513 5-123 (126)
146 2lni_A Stress-induced-phosphop 98.6 5.6E-07 1.9E-11 71.9 12.4 99 434-532 14-114 (133)
147 2e2e_A Formate-dependent nitri 98.6 2.9E-07 9.8E-12 78.1 11.2 122 410-533 20-146 (177)
148 3gw4_A Uncharacterized protein 98.6 1.3E-06 4.3E-11 75.8 15.6 128 402-529 28-174 (203)
149 4gcn_A Protein STI-1; structur 98.6 2.5E-07 8.5E-12 73.5 9.7 95 437-531 9-112 (127)
150 1elw_A TPR1-domain of HOP; HOP 98.6 1.1E-06 3.9E-11 68.2 13.3 108 402-511 6-115 (118)
151 4f3v_A ESX-1 secretion system 98.6 1.1E-06 3.7E-11 78.9 14.5 137 368-509 105-248 (282)
152 3sz7_A HSC70 cochaperone (SGT) 98.6 6.5E-07 2.2E-11 74.8 12.2 97 436-532 11-109 (164)
153 1elw_A TPR1-domain of HOP; HOP 98.6 1.1E-06 3.7E-11 68.3 12.5 98 435-532 3-102 (118)
154 3q7a_A Farnesyltransferase alp 98.5 6.5E-05 2.2E-09 69.8 25.9 231 273-508 63-343 (349)
155 2dba_A Smooth muscle cell asso 98.5 1.3E-06 4.5E-11 71.2 13.2 110 399-511 27-142 (148)
156 3gw4_A Uncharacterized protein 98.5 8.8E-07 3E-11 76.8 12.8 153 346-498 4-177 (203)
157 2hr2_A Hypothetical protein; a 98.5 4.8E-07 1.7E-11 73.1 10.0 61 470-530 59-130 (159)
158 1na0_A Designed protein CTPR3; 98.5 1.3E-06 4.6E-11 68.6 12.5 97 436-532 9-107 (125)
159 2dba_A Smooth muscle cell asso 98.5 2E-06 6.8E-11 70.1 13.7 98 434-531 26-128 (148)
160 1a17_A Serine/threonine protei 98.5 2.2E-06 7.7E-11 71.4 14.2 128 366-496 14-145 (166)
161 3q49_B STIP1 homology and U bo 98.5 1E-06 3.4E-11 70.9 11.1 113 399-513 8-127 (137)
162 3q7a_A Farnesyltransferase alp 98.5 1E-05 3.6E-10 75.1 19.0 215 313-531 68-331 (349)
163 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.4E-06 4.7E-11 86.2 13.7 96 436-531 317-415 (457)
164 2vyi_A SGTA protein; chaperone 98.4 2.4E-06 8.3E-11 67.7 12.0 98 435-532 11-110 (131)
165 2xev_A YBGF; tetratricopeptide 98.4 1.5E-06 5E-11 69.1 10.3 105 405-509 7-117 (129)
166 1wao_1 Serine/threonine protei 98.4 7E-07 2.4E-11 88.7 9.8 120 406-527 12-135 (477)
167 1p5q_A FKBP52, FK506-binding p 98.4 2.7E-06 9.2E-11 80.4 13.3 128 365-496 147-293 (336)
168 3k9i_A BH0479 protein; putativ 98.4 4.2E-07 1.4E-11 71.0 6.0 90 413-503 3-96 (117)
169 3rkv_A Putative peptidylprolyl 98.4 1.4E-06 4.7E-11 72.6 9.5 111 400-510 11-140 (162)
170 3dss_A Geranylgeranyl transfer 98.4 7.9E-05 2.7E-09 68.9 22.0 162 366-530 109-303 (331)
171 1elr_A TPR2A-domain of HOP; HO 98.4 1.9E-06 6.5E-11 68.4 9.7 109 402-513 6-123 (131)
172 1hxi_A PEX5, peroxisome target 98.4 1.7E-06 5.9E-11 67.8 9.0 98 403-502 20-119 (121)
173 3dss_A Geranylgeranyl transfer 98.4 9.5E-05 3.3E-09 68.4 21.9 241 265-512 27-319 (331)
174 2kck_A TPR repeat; tetratricop 98.4 2.9E-06 9.9E-11 65.1 10.1 100 401-502 7-111 (112)
175 2xev_A YBGF; tetratricopeptide 98.3 7.7E-06 2.6E-10 64.8 12.8 92 441-532 7-106 (129)
176 1ihg_A Cyclophilin 40; ppiase 98.3 3.8E-06 1.3E-10 80.3 12.6 137 367-524 225-363 (370)
177 1elr_A TPR2A-domain of HOP; HO 98.3 3.2E-06 1.1E-10 67.1 10.1 97 436-532 4-109 (131)
178 2c2l_A CHIP, carboxy terminus 98.3 3.7E-06 1.3E-10 77.2 11.6 112 399-512 3-116 (281)
179 4gcn_A Protein STI-1; structur 98.3 3.9E-06 1.3E-10 66.4 10.2 96 403-500 11-115 (127)
180 3rkv_A Putative peptidylprolyl 98.3 1.9E-06 6.6E-11 71.7 8.7 61 470-530 65-125 (162)
181 2if4_A ATFKBP42; FKBP-like, al 98.3 1.5E-06 5.2E-11 82.1 8.9 147 366-532 180-329 (338)
182 3ro3_A PINS homolog, G-protein 98.3 4.3E-06 1.5E-10 69.2 10.7 128 403-530 12-157 (164)
183 4b4t_Q 26S proteasome regulato 98.3 1.2E-05 4.1E-10 79.1 15.5 163 368-530 58-244 (434)
184 2fbn_A 70 kDa peptidylprolyl i 98.3 9.1E-07 3.1E-11 76.6 6.3 96 437-532 39-152 (198)
185 3k9i_A BH0479 protein; putativ 98.2 9.8E-07 3.3E-11 68.8 5.0 83 449-531 3-90 (117)
186 1dce_A Protein (RAB geranylger 98.2 4.3E-05 1.5E-09 77.3 18.0 167 350-520 45-244 (567)
187 2if4_A ATFKBP42; FKBP-like, al 98.2 4.5E-06 1.6E-10 78.9 9.7 150 334-502 179-333 (338)
188 3ro3_A PINS homolog, G-protein 98.2 1.3E-05 4.3E-10 66.3 11.5 132 367-498 11-159 (164)
189 2l6j_A TPR repeat-containing p 98.2 6.4E-07 2.2E-11 69.0 2.7 93 435-527 3-103 (111)
190 2hr2_A Hypothetical protein; a 98.1 7.4E-06 2.5E-10 66.2 8.4 73 438-510 59-144 (159)
191 3n71_A Histone lysine methyltr 98.1 2.2E-05 7.4E-10 77.5 13.1 124 409-532 318-465 (490)
192 3ma5_A Tetratricopeptide repea 98.1 1.5E-05 5.2E-10 59.9 9.3 64 467-530 6-69 (100)
193 4b4t_Q 26S proteasome regulato 98.1 6.4E-05 2.2E-09 73.8 15.6 159 372-530 11-203 (434)
194 2kat_A Uncharacterized protein 98.1 2.4E-05 8.3E-10 60.5 10.0 79 419-499 4-84 (115)
195 1na3_A Designed protein CTPR2; 98.0 3.6E-05 1.2E-09 56.3 9.7 81 436-516 9-91 (91)
196 1zu2_A Mitochondrial import re 98.0 4.1E-06 1.4E-10 67.6 4.5 85 448-532 14-121 (158)
197 1wao_1 Serine/threonine protei 98.0 3E-05 1E-09 76.9 11.3 83 344-428 16-102 (477)
198 1ihg_A Cyclophilin 40; ppiase 98.0 2.5E-05 8.5E-10 74.6 10.0 113 401-532 224-337 (370)
199 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 5.9E-05 2E-09 74.5 12.8 125 366-494 269-412 (457)
200 1dce_A Protein (RAB geranylger 98.0 8.8E-05 3E-09 75.0 14.0 151 378-532 42-222 (567)
201 3bee_A Putative YFRE protein; 97.9 8.6E-05 2.9E-09 54.4 9.9 72 465-537 3-77 (93)
202 1zu2_A Mitochondrial import re 97.9 3.8E-05 1.3E-09 61.9 7.5 108 415-531 17-147 (158)
203 2l6j_A TPR repeat-containing p 97.8 0.0001 3.5E-09 56.2 9.1 66 467-532 3-68 (111)
204 2kat_A Uncharacterized protein 97.7 0.00012 4E-09 56.5 8.6 75 455-529 4-80 (115)
205 3n71_A Histone lysine methyltr 97.7 0.00022 7.4E-09 70.4 11.1 124 374-497 318-464 (490)
206 1klx_A Cysteine rich protein B 97.7 0.0005 1.7E-08 55.0 11.5 109 380-497 10-126 (138)
207 1na3_A Designed protein CTPR2; 97.6 0.00023 8E-09 51.8 8.5 66 467-532 8-73 (91)
208 1klx_A Cysteine rich protein B 97.5 0.0022 7.5E-08 51.1 12.7 112 414-533 9-128 (138)
209 3ly7_A Transcriptional activat 97.5 0.0041 1.4E-07 57.8 15.7 138 363-502 192-344 (372)
210 3qww_A SET and MYND domain-con 97.4 0.0005 1.7E-08 66.6 9.5 61 469-529 341-409 (433)
211 3lvg_A Clathrin heavy chain 1; 97.4 6.5E-07 2.2E-11 84.2 -10.2 118 63-191 53-170 (624)
212 3ma5_A Tetratricopeptide repea 97.4 0.00042 1.4E-08 51.7 6.9 66 434-499 5-72 (100)
213 2kc7_A BFR218_protein; tetratr 97.3 0.00072 2.5E-08 50.2 7.8 80 441-528 5-87 (99)
214 2kc7_A BFR218_protein; tetratr 97.3 0.001 3.5E-08 49.3 8.6 53 408-462 8-61 (99)
215 3qwp_A SET and MYND domain-con 97.3 0.00097 3.3E-08 64.7 10.3 60 470-529 331-398 (429)
216 1wy6_A Hypothetical protein ST 97.2 0.027 9.2E-07 43.0 14.8 141 375-534 17-157 (172)
217 3qww_A SET and MYND domain-con 97.2 0.0024 8.1E-08 61.9 11.7 95 412-506 310-425 (433)
218 3qwp_A SET and MYND domain-con 97.2 0.0045 1.5E-07 60.0 13.0 101 407-507 294-415 (429)
219 3u64_A Protein TP_0956; tetrat 97.1 0.0022 7.4E-08 57.0 8.8 88 452-539 179-277 (301)
220 3ly7_A Transcriptional activat 96.9 0.0093 3.2E-07 55.4 11.9 133 396-532 190-340 (372)
221 3bee_A Putative YFRE protein; 96.9 0.0059 2E-07 44.5 8.6 68 433-500 3-75 (93)
222 2v5f_A Prolyl 4-hydroxylase su 96.8 0.012 4E-07 44.0 10.0 75 435-509 4-87 (104)
223 3mkq_A Coatomer beta'-subunit; 96.7 0.097 3.3E-06 55.7 20.1 155 272-462 607-762 (814)
224 1pc2_A Mitochondria fission pr 96.7 0.0057 2E-07 48.7 7.7 93 414-508 12-111 (152)
225 1pc2_A Mitochondria fission pr 96.6 0.012 4.2E-07 46.7 9.0 66 466-531 30-100 (152)
226 3lvg_A Clathrin heavy chain 1; 96.2 0.00015 5.2E-09 68.5 -4.6 243 26-285 52-325 (624)
227 3mkq_A Coatomer beta'-subunit; 96.2 0.064 2.2E-06 57.1 14.7 130 338-494 633-762 (814)
228 1qsa_A Protein (soluble lytic 95.9 1.7 5.8E-05 43.9 29.8 114 379-496 228-347 (618)
229 2v5f_A Prolyl 4-hydroxylase su 95.8 0.053 1.8E-06 40.4 8.7 66 467-532 4-76 (104)
230 4ady_A RPN2, 26S proteasome re 95.5 3 0.0001 44.0 24.0 149 375-530 500-657 (963)
231 1nzn_A CGI-135 protein, fissio 95.5 0.16 5.6E-06 38.7 10.2 92 415-508 16-114 (126)
232 3mkq_B Coatomer subunit alpha; 95.4 0.48 1.6E-05 38.7 13.2 50 35-91 12-61 (177)
233 4h7y_A Dual specificity protei 95.2 0.084 2.9E-06 41.4 7.7 99 399-500 12-126 (161)
234 3mkq_B Coatomer subunit alpha; 95.2 1.1 3.6E-05 36.6 16.4 126 376-528 16-141 (177)
235 4gns_B Protein CSD3, chitin bi 95.1 0.36 1.2E-05 49.8 14.3 54 476-529 345-398 (754)
236 3u64_A Protein TP_0956; tetrat 94.9 0.05 1.7E-06 48.4 6.4 81 417-500 180-272 (301)
237 1nzn_A CGI-135 protein, fissio 94.8 0.1 3.5E-06 39.9 7.2 81 452-532 17-104 (126)
238 4h7y_A Dual specificity protei 94.0 0.72 2.5E-05 36.2 10.3 97 363-462 11-120 (161)
239 2ff4_A Probable regulatory pro 93.6 0.21 7E-06 47.6 8.5 54 475-528 178-231 (388)
240 4ady_A RPN2, 26S proteasome re 93.5 8.8 0.0003 40.6 27.7 164 309-478 500-671 (963)
241 1y8m_A FIS1; mitochondria, unk 93.3 1.5 5.1E-05 34.1 11.1 74 433-506 36-115 (144)
242 3o48_A Mitochondria fission 1 92.9 0.62 2.1E-05 35.7 8.3 73 434-506 38-116 (134)
243 3ffl_A Anaphase-promoting comp 92.8 0.72 2.5E-05 37.0 9.0 124 394-529 12-149 (167)
244 1wy6_A Hypothetical protein ST 92.5 2.8 9.6E-05 32.2 12.9 138 274-429 17-154 (172)
245 2wpv_A GET4, UPF0363 protein Y 91.9 7.1 0.00024 35.3 17.1 113 66-189 35-158 (312)
246 4b4t_P 26S proteasome regulato 91.6 5 0.00017 38.8 15.3 182 348-530 30-246 (445)
247 3ffl_A Anaphase-promoting comp 90.7 1.4 4.9E-05 35.3 8.5 31 435-465 121-151 (167)
248 1y8m_A FIS1; mitochondria, unk 89.7 5.9 0.0002 30.8 11.2 68 465-532 36-107 (144)
249 1v54_E Cytochrome C oxidase po 89.3 1.7 5.7E-05 31.3 6.9 63 380-444 25-87 (109)
250 3txn_A 26S proteasome regulato 89.3 14 0.00047 34.9 15.5 163 300-462 20-207 (394)
251 2uwj_G Type III export protein 89.2 4.7 0.00016 28.8 9.8 88 142-234 18-105 (115)
252 3o48_A Mitochondria fission 1 89.1 2.7 9.1E-05 32.2 8.5 67 465-531 37-107 (134)
253 2p58_C Putative type III secre 88.9 5 0.00017 28.8 9.8 88 142-234 19-106 (116)
254 4gns_B Protein CSD3, chitin bi 88.3 1.8 6E-05 44.7 9.4 127 336-464 250-399 (754)
255 4fhn_B Nucleoporin NUP120; pro 87.5 7.4 0.00025 43.0 14.5 81 403-483 902-986 (1139)
256 4fhn_B Nucleoporin NUP120; pro 87.4 8 0.00027 42.7 14.6 64 469-532 900-968 (1139)
257 3lpz_A GET4 (YOR164C homolog); 87.1 18 0.0006 33.0 21.8 113 66-189 37-160 (336)
258 3ltm_A Alpha-REP4; protein eng 86.1 14 0.00048 31.0 16.7 155 61-224 30-184 (211)
259 1zbp_A Hypothetical protein VP 86.0 2.3 7.9E-05 37.2 7.5 57 445-501 6-64 (273)
260 1zbp_A Hypothetical protein VP 85.5 18 0.00062 31.7 13.1 52 376-428 8-59 (273)
261 1v54_E Cytochrome C oxidase po 85.4 6.4 0.00022 28.4 8.0 49 461-509 38-86 (109)
262 2y69_E Cytochrome C oxidase su 85.3 5.9 0.0002 30.3 8.3 63 380-444 68-130 (152)
263 2ff4_A Probable regulatory pro 84.6 7.4 0.00025 36.8 11.1 69 369-438 175-247 (388)
264 2qx5_A Nucleoporin NIC96; mRNA 84.4 38 0.0013 34.4 16.9 17 512-528 548-564 (661)
265 3esl_A Checkpoint serine/threo 84.0 13 0.00046 30.8 10.8 30 468-497 115-144 (202)
266 3lpz_A GET4 (YOR164C homolog); 82.1 30 0.001 31.6 21.2 126 288-428 83-215 (336)
267 4b4t_P 26S proteasome regulato 80.9 41 0.0014 32.3 22.4 184 278-462 30-244 (445)
268 3ltj_A Alpharep-4; protein eng 80.8 23 0.00078 29.3 16.9 155 61-224 25-179 (201)
269 2wpv_A GET4, UPF0363 protein Y 80.0 34 0.0012 30.9 20.7 180 175-428 23-216 (312)
270 4b4t_R RPN7, 26S proteasome re 79.0 12 0.00042 35.8 10.5 94 336-429 133-237 (429)
271 4a1g_A Mitotic checkpoint seri 77.8 24 0.00082 27.8 10.0 49 487-535 84-134 (152)
272 2uwj_G Type III export protein 77.1 18 0.0006 26.0 9.0 85 314-403 21-105 (115)
273 2y69_E Cytochrome C oxidase su 76.5 17 0.00057 27.9 8.0 51 459-509 79-129 (152)
274 2p58_C Putative type III secre 75.2 20 0.00069 25.7 9.9 85 314-403 22-106 (116)
275 3ltm_A Alpha-REP4; protein eng 74.3 37 0.0013 28.3 18.1 91 332-427 93-183 (211)
276 2wvi_A Mitotic checkpoint seri 73.4 33 0.0011 27.4 9.7 32 500-531 94-125 (164)
277 4b4t_R RPN7, 26S proteasome re 73.2 9.1 0.00031 36.8 7.8 97 402-498 133-238 (429)
278 3ltj_A Alpharep-4; protein eng 70.9 43 0.0015 27.6 18.1 159 257-428 21-179 (201)
279 1qsa_A Protein (soluble lytic 68.1 1.1E+02 0.0036 31.0 36.8 238 279-534 229-482 (618)
280 3esl_A Checkpoint serine/threo 66.5 55 0.0019 27.2 10.0 58 378-436 92-150 (202)
281 3txn_A 26S proteasome regulato 61.8 1.1E+02 0.0036 28.8 30.1 292 167-533 21-345 (394)
282 1wdy_A 2-5A-dependent ribonucl 60.5 85 0.0029 27.2 12.3 183 33-230 7-213 (285)
283 3mv2_A Coatomer subunit alpha; 59.9 1E+02 0.0034 27.9 12.0 58 460-531 197-256 (325)
284 1oyz_A Hypothetical protein YI 58.0 96 0.0033 27.1 20.2 20 261-280 203-222 (280)
285 1k1a_A B-cell lymphoma 3-encod 55.5 93 0.0032 26.2 11.5 186 33-230 11-210 (241)
286 4gq2_M Nucleoporin NUP120; bet 53.3 1.2E+02 0.0039 32.7 12.4 85 406-496 816-925 (950)
287 4aez_C MAD3, mitotic spindle c 51.9 82 0.0028 26.6 8.7 32 467-498 149-180 (223)
288 1wdy_A 2-5A-dependent ribonucl 51.2 91 0.0031 27.0 9.9 41 318-358 198-240 (285)
289 3kae_A CDC27, possible protein 50.3 79 0.0027 25.4 7.7 98 174-289 42-139 (242)
290 4a1g_A Mitotic checkpoint seri 48.5 97 0.0033 24.4 9.5 54 382-436 82-136 (152)
291 2r9g_A AAA ATPase, central reg 47.8 1.2E+02 0.004 25.1 8.9 62 267-329 14-83 (204)
292 4aez_C MAD3, mitotic spindle c 44.5 1.2E+02 0.0041 25.7 8.5 54 382-436 131-185 (223)
293 2d2s_A Exocyst complex compone 44.3 82 0.0028 27.0 7.8 23 101-123 24-46 (235)
294 2d2s_A Exocyst complex compone 43.6 86 0.003 26.9 7.8 22 407-428 25-46 (235)
295 1bpo_A Protein (clathrin); cla 41.6 1.6E+02 0.0055 28.2 9.7 90 32-125 333-425 (494)
296 1k1a_A B-cell lymphoma 3-encod 40.7 1.6E+02 0.0055 24.6 12.7 24 104-127 15-38 (241)
297 1ya0_A SMG-7 transcript varian 40.6 1E+02 0.0035 30.0 8.7 55 475-529 159-213 (497)
298 2wvi_A Mitotic checkpoint seri 40.4 1.4E+02 0.0048 23.8 10.0 55 382-437 77-132 (164)
299 3ctd_A Putative ATPase, AAA fa 40.3 1.6E+02 0.0053 24.6 8.3 66 264-329 32-105 (213)
300 4b4t_S RPN3, 26S proteasome re 39.9 75 0.0026 31.0 7.5 62 401-462 232-296 (523)
301 3bqo_A Telomeric repeat-bindin 39.9 1.5E+02 0.005 24.5 7.9 26 477-502 126-151 (211)
302 3bge_A Predicted ATPase; struc 39.5 1.3E+02 0.0045 24.8 7.7 46 268-313 8-56 (201)
303 2nsz_A Programmed cell death p 39.1 1E+02 0.0035 23.4 6.9 62 169-230 11-77 (129)
304 3eu9_A Huntingtin-interacting 39.0 1.2E+02 0.0042 25.3 8.5 16 73-88 48-63 (240)
305 2ion_A PDCD4, programmed cell 37.3 1.2E+02 0.0042 23.8 7.2 65 337-401 12-81 (152)
306 1oyz_A Hypothetical protein YI 36.5 2.1E+02 0.0072 24.8 21.4 38 282-322 192-229 (280)
307 3bu8_A Telomeric repeat-bindin 36.3 1.2E+02 0.0042 25.3 7.0 20 443-462 121-140 (235)
308 3kea_A K1L; tropism, ANK repea 35.3 2.2E+02 0.0075 24.9 9.8 142 71-220 35-182 (285)
309 3kea_A K1L; tropism, ANK repea 34.6 1.2E+02 0.0041 26.6 7.8 18 479-496 169-186 (285)
310 2nsz_A Programmed cell death p 34.4 1.5E+02 0.0051 22.4 8.6 65 337-401 10-79 (129)
311 4gq2_M Nucleoporin NUP120; bet 34.1 4.2E+02 0.014 28.4 13.0 128 68-209 814-949 (950)
312 2ion_A PDCD4, programmed cell 32.6 83 0.0028 24.8 5.5 63 168-230 12-79 (152)
313 4b4t_S RPN3, 26S proteasome re 31.9 1.2E+02 0.0042 29.5 7.5 67 436-502 231-304 (523)
314 1n11_A Ankyrin; clathrin, BAND 31.6 2.7E+02 0.0093 26.1 10.4 18 173-190 118-135 (437)
315 3mkr_B Coatomer subunit alpha; 31.3 2.2E+02 0.0074 25.7 8.5 126 375-532 112-248 (320)
316 3ygs_P Procaspase 9; apoptosis 31.1 52 0.0018 23.5 3.8 63 50-115 26-88 (97)
317 2fe3_A Peroxide operon regulat 30.8 93 0.0032 24.1 5.6 62 119-181 11-72 (145)
318 2fe3_A Peroxide operon regulat 30.3 1.3E+02 0.0043 23.3 6.3 60 390-451 12-71 (145)
319 1mzb_A Ferric uptake regulatio 30.3 98 0.0034 23.6 5.6 61 120-181 8-69 (136)
320 1wgl_A TOLL-interacting protei 29.8 55 0.0019 20.8 3.3 25 513-537 34-58 (59)
321 2ab9_A Pro-SFTI-1; protein, be 29.6 32 0.0011 17.3 1.6 13 559-571 13-25 (31)
322 2w57_A Ferric uptake regulatio 29.3 1E+02 0.0035 24.1 5.6 62 119-181 6-68 (150)
323 2cfu_A SDSA1; SDS-hydrolase, l 28.5 1.4E+02 0.0048 30.4 7.8 64 452-518 436-499 (658)
324 2xig_A Ferric uptake regulatio 27.3 1.8E+02 0.0062 22.6 6.8 60 390-451 17-76 (150)
325 1n11_A Ankyrin; clathrin, BAND 26.9 3.9E+02 0.013 24.9 11.2 146 33-192 16-170 (437)
326 2b7e_A PRE-mRNA processing pro 26.8 64 0.0022 20.5 3.1 33 111-143 2-35 (59)
327 2w57_A Ferric uptake regulatio 26.5 2.1E+02 0.0073 22.2 7.0 61 288-349 6-67 (150)
328 2p1h_A APAF-1, apoptotic prote 26.4 1.7E+02 0.0057 20.5 6.7 63 47-114 24-86 (94)
329 1mzb_A Ferric uptake regulatio 24.7 2E+02 0.007 21.8 6.5 59 289-348 8-67 (136)
330 2crb_A Nuclear receptor bindin 24.7 1.1E+02 0.0037 21.6 4.1 22 505-526 18-39 (97)
331 2ijq_A Hypothetical protein; s 23.9 2.7E+02 0.0093 22.1 7.7 57 439-496 36-103 (161)
332 3hra_A Ankyrin repeat family p 23.9 2.8E+02 0.0095 22.2 10.2 149 73-230 11-172 (201)
333 4ets_A Ferric uptake regulatio 23.3 1.5E+02 0.0052 23.5 5.6 69 112-181 14-85 (162)
334 4ets_A Ferric uptake regulatio 23.3 1.4E+02 0.0049 23.6 5.5 69 382-451 14-84 (162)
335 3bqo_A Telomeric repeat-bindin 23.1 3.2E+02 0.011 22.6 9.4 80 42-123 39-145 (211)
336 3mwm_A ZUR, putative metal upt 22.7 1.3E+02 0.0043 23.2 4.9 48 32-80 17-64 (139)
337 2o03_A Probable zinc uptake re 22.6 1.3E+02 0.0046 22.7 5.0 47 33-80 15-61 (131)
338 1bd8_A P19INK4D CDK4/6 inhibit 21.7 1.9E+02 0.0064 22.0 6.1 18 173-190 106-123 (156)
339 2fu4_A Ferric uptake regulatio 21.7 1.9E+02 0.0064 19.4 6.9 59 289-348 7-66 (83)
340 1bpo_A Protein (clathrin); cla 21.5 5.5E+02 0.019 24.7 11.3 45 379-426 343-387 (494)
341 3qye_A TBC1 domain family memb 21.5 4.5E+02 0.015 23.6 10.5 42 151-192 209-250 (331)
342 2o03_A Probable zinc uptake re 21.3 1.5E+02 0.005 22.5 5.0 44 371-414 16-59 (131)
343 2xig_A Ferric uptake regulatio 21.0 2.8E+02 0.0095 21.5 6.7 35 314-348 41-75 (150)
344 3ygs_P Procaspase 9; apoptosis 20.4 1.2E+02 0.0042 21.5 4.1 35 249-283 53-87 (97)
345 3aji_A 26S proteasome non-ATPa 20.2 3.6E+02 0.012 22.1 10.0 19 71-89 10-28 (231)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.3e-40 Score=340.02 Aligned_cols=447 Identities=10% Similarity=0.002 Sum_probs=378.1
Q ss_pred HhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHH
Q 008276 73 TYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI 152 (571)
Q Consensus 73 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 152 (571)
.+...|.+..+...+..++.++...|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 345667788888888888888999999999999999999999999999985 467888999999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCC-------------------CchhHHHHHHHHHhCCCch
Q 008276 153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-------------------DVVTWNSMVAGYAQNGRFD 213 (571)
Q Consensus 153 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~ 213 (571)
++.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987643 678899999999999999999999999965433 3678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHH--------------------------------------HHHhcCCCCccHHHHHH
Q 008276 214 EALDVCREMESLRIKPD-ADTMASL--------------------------------------LPSVTNTSPENVLSVKE 254 (571)
Q Consensus 214 ~a~~~~~~m~~~g~~p~-~~t~~~l--------------------------------------l~~~~~~~~~~~~~a~~ 254 (571)
+|+++|++|.+.+ |+ ...+..+ +..+.+.++ .+.|.+
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~A~~ 293 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE--LRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH--HHHHHH
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch--HHHHHH
Confidence 9999999998754 33 2222222 223333333 889999
Q ss_pred HHhhCCC--CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCC
Q 008276 255 MFLKLDN--KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332 (571)
Q Consensus 255 ~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 332 (571)
+++++.. ++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 9999886 889999999999999999999999999999765 4477889999999999999999999999999765 66
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276 333 NLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409 (571)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 409 (571)
+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|+++|+++.+.+ +.+..+|..++.+
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 788999999999999999999999998763 467899999999999999999999999999853 3477899999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHh
Q 008276 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-------PMEPN--ERIWGSLVAACCL 480 (571)
Q Consensus 410 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~ 480 (571)
|.+.|++++|.++|+++.+. .+.+..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999874 3457889999999999999999999999988 44776 7899999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 481 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
.|++++|+..++++.+.+|+++.+|..++.+|.+.|++++|.++++++.+..
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999998764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-38 Score=330.78 Aligned_cols=447 Identities=10% Similarity=0.008 Sum_probs=374.2
Q ss_pred cccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHccc--CCCChhhHHHHHH
Q 008276 26 YTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI--TNKNVVFFNVLIR 103 (571)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~ 103 (571)
++...++.++..+.+.|++++|..+|.++. ... |+..++..++.+|.+.|++++|..+|+.+ ..++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVL-DIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHH-hhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 455567889999999999999999999988 543 57788889999999999999999999988 4578889999999
Q ss_pred HHHHcCChhHHHHHHHHHHhC---------------CCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHH
Q 008276 104 SYVNNYLYYDALHVYKNMSVH---------------GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168 (571)
Q Consensus 104 ~~~~~~~~~~A~~~~~~m~~~---------------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 168 (571)
+|.+.|++++|+++|+++... |.+++..+|+.++.++.+.|++++|.++|+++.+.+ +.+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 999999999999999853221 223356789999999999999999999999998875 2233333
Q ss_pred HHH--------------------------------------HHHHHhCCCHHHHHHHHccCCC--CCchhHHHHHHHHHh
Q 008276 169 NGL--------------------------------------VAMYGKCGCLKEARRVLNDMPS--KDVVTWNSMVAGYAQ 208 (571)
Q Consensus 169 ~~l--------------------------------------~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 208 (571)
..+ +..|.+.|++++|.++|+++.+ ++..+|+.++.++.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 333 3344556677777777777665 566677777777777
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHH
Q 008276 209 NGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL 288 (571)
Q Consensus 209 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 288 (571)
.|++++|+++|+++.+.+ | .+..+++.++.+|.+.|++++|..+++
T Consensus 318 ~g~~~~A~~~~~~~~~~~--~--------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID--P--------------------------------YNLDVYPLHLASLHESGEKNKLYLISN 363 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC--T--------------------------------TCCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC--c--------------------------------ccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 777777777777766432 2 256789999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCh
Q 008276 289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDV 365 (571)
Q Consensus 289 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~ 365 (571)
++.+.. +.+..++..++..|.+.|++++|.++|+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+.
T Consensus 364 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 441 (597)
T 2xpi_A 364 DLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH 441 (597)
T ss_dssp HHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 998653 5678899999999999999999999999999865 45688999999999999999999999998763 478
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc---CCCCC--HHHHH
Q 008276 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY---KLVPR--IEHFA 440 (571)
Q Consensus 366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~ 440 (571)
.+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..+.+.|++++|.++|+++.+.. +..|+ ..+|.
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 899999999999999999999999999852 3467899999999999999999999999997653 44676 78999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276 441 CLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513 (571)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 513 (571)
.++.+|.+.|++++|.++++++ ...| +..+|..+..+|.+.|++++|...++++++++|+++.++..++.+|.
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999988 4445 78999999999999999999999999999999999999999988764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=7.5e-28 Score=236.00 Aligned_cols=374 Identities=12% Similarity=0.079 Sum_probs=315.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCc-ccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 008276 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDC-YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179 (571)
Q Consensus 101 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 179 (571)
+...+.+.|++++|++.++++.+. .|+. ..+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 356677889999999999888775 3544 455566667788899999999988888764 567788999999999999
Q ss_pred CHHHHHHHHccCCC--C-CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHH
Q 008276 180 CLKEARRVLNDMPS--K-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMF 256 (571)
Q Consensus 180 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~ 256 (571)
++++|+..|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+. .|+
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~-------------------------- 133 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPD-------------------------- 133 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTT--------------------------
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------------
Confidence 99999999988763 4 4557889999999999999999999988763 343
Q ss_pred hhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhH
Q 008276 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336 (571)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (571)
+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...|+.+.+.+ +.+...
T Consensus 134 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T 1w3b_A 134 ------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp ------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred ------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 34567777888888999999999999988753 3456788888889999999999999999999876 456778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhc
Q 008276 337 ENALVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSH 412 (571)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~ 412 (571)
+..+...+...|++++|...+++..+ | +..++..+...+...|++++|++.|+++.+. .| +..+|..+...+..
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHH
Confidence 88889999999999999999987753 3 5778999999999999999999999999984 45 46689999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 008276 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILA 490 (571)
Q Consensus 413 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 490 (571)
.|++++|...|+++.+. .+.+..++..+...+...|++++|.+.++++ ...| +..++..+...+.+.|++++|+..
T Consensus 284 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999874 4567788999999999999999999999987 5556 578899999999999999999999
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhcCC
Q 008276 491 ADHIFHLAPNQSGYYVLLSNIYAKAGR 517 (571)
Q Consensus 491 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 517 (571)
++++++..|+++.+|..++.++...|+
T Consensus 362 ~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.2e-26 Score=227.36 Aligned_cols=355 Identities=13% Similarity=0.052 Sum_probs=310.0
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCch
Q 008276 137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFD 213 (571)
Q Consensus 137 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 213 (571)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+ .+..+|..+..++.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 455678899999999999998874 44567778888899999999999999987654 46678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 008276 214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293 (571)
Q Consensus 214 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 293 (571)
+|+..|+++... .|+ +..+|..+..++.+.|++++|.+.|+++.+.
T Consensus 85 ~A~~~~~~al~~--~p~--------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPD--------------------------------FIDGYINLAAALVAAGDMEGAVQAYVSALQY 130 (388)
T ss_dssp HHHHHHHHHHHH--CTT--------------------------------CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--Ccc--------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999763 343 4567888999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHH
Q 008276 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTS 370 (571)
Q Consensus 294 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ 370 (571)
. +.+...+..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|...|+++.+ | +...|..
T Consensus 131 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 208 (388)
T 1w3b_A 131 N-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN 208 (388)
T ss_dssp C-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4 3345667778888999999999999999999875 45678899999999999999999999999874 3 5668999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 008276 371 MISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449 (571)
Q Consensus 371 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (571)
+...+...|++++|+..|++..+ ..| +..++..+...+...|++++|...|+++.+. .+.+...+..++..+.+.
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALS--LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999988 455 4668899999999999999999999999874 344567899999999999
Q ss_pred CCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276 450 GKVEEAYDLIKQM-PM-EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527 (571)
Q Consensus 450 g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 527 (571)
|++++|.+.++++ .. +.+..+|..+...+...|++++|+..++++.+..|++..++..++.+|.+.|++++|...+++
T Consensus 285 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999988 33 347889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q 008276 528 MNSKG 532 (571)
Q Consensus 528 m~~~~ 532 (571)
+.+..
T Consensus 365 a~~~~ 369 (388)
T 1w3b_A 365 AIRIS 369 (388)
T ss_dssp HHTTC
T ss_pred HHhhC
Confidence 98643
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=5.2e-28 Score=240.83 Aligned_cols=184 Identities=14% Similarity=0.136 Sum_probs=174.3
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc---------hHHHHHHHHHHHHcCCCCChh
Q 008276 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA---------LLLGRKIHRYVERKKLQPNLR 335 (571)
Q Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 335 (571)
..++.+|++|++.|++++|+++|++|.+.|++||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34777889999999999999999999999999999999999999987653 788999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 008276 336 LENALVDMYAKCGSLTEARTVFDQMRC----QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411 (571)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 411 (571)
+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999973 8999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 008276 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA 449 (571)
Q Consensus 412 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (571)
+.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999988 9999999999999988763
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.5e-27 Score=235.99 Aligned_cols=134 Identities=16% Similarity=0.212 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCC---------hHHHHHHHHHHHHhCCCCchhH
Q 008276 97 FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS---------LLVGLQIHCSVVKVGLDYNLFN 167 (571)
Q Consensus 97 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~~ 167 (571)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4566666666666666666666666666666666666666666655443 4556666666666666666555
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCC----CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 008276 168 GNGLVAMYGKCGCLKEARRVLNDMPS----KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230 (571)
Q Consensus 168 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 230 (571)
|++||.+|++.|++++|.++|++|.+ ||..+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 55555555555555444444444431 3444444444444444444444444444444444443
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.3e-24 Score=221.47 Aligned_cols=264 Identities=8% Similarity=-0.099 Sum_probs=222.7
Q ss_pred hhhHHHHHHHHHH---cCCchHHHHHHHHHHH-----CCCCC--------CHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 008276 264 LVSWNVMIAVYAN---NSMPAEAVDLYLQMEV-----HGIEP--------NAISVASVLPACGDLSALLLGRKIHRYVER 327 (571)
Q Consensus 264 ~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~-----~g~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 327 (571)
...+......+.. .|++++|..+|+++.+ ....| +..++..+...+...|+++.|...++.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4455555555554 8999999999999987 31122 345677788889999999999999999998
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 008276 328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404 (571)
Q Consensus 328 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 404 (571)
.... ...+..+..++...|++++|...++.+.+ .+...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus 266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 342 (514)
T 2gw1_A 266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYI 342 (514)
T ss_dssp HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHH
T ss_pred hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHH
Confidence 7643 88888899999999999999999998764 466789999999999999999999999999853 23566888
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHH
Q 008276 405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM----PMEPN----ERIWGSLVA 476 (571)
Q Consensus 405 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~ 476 (571)
.+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...++++ +..++ ...|..+..
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 8999999999999999999999875 3445678889999999999999999999887 22222 348888999
Q ss_pred HHHh---cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 477 ACCL---YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 477 ~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
.+.. .|++++|...++++.+..|+++.++..++.+|.+.|++++|...+++..+..
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9999 9999999999999999999999999999999999999999999999988754
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.6e-24 Score=214.95 Aligned_cols=446 Identities=10% Similarity=-0.003 Sum_probs=328.4
Q ss_pred ChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHH
Q 008276 30 SGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYV 106 (571)
Q Consensus 30 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 106 (571)
.+...+..+.+.|++++|...|..++ +.. |++..+..+..+|...|++++|...|+.+.+ .+..+|..+..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWAL-ELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHH-HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH-hcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 45667888999999999999999998 665 5888999999999999999999999987653 35678999999999
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHH---HHHHHhCCCHHH
Q 008276 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGL---VAMYGKCGCLKE 183 (571)
Q Consensus 107 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---~~~~~~~g~~~~ 183 (571)
+.|++++|+..|+++...+ +++......++..+........+.+.+..+...+..|+......- ............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999998875 344455555554444333333333333222211111111100000 001111111222
Q ss_pred HHHHHccCCC---------C-CchhHHHHHHHHHh---CCCchHHHHHHHHHHH-----CCCCCCHHHHHHHHHHhcCCC
Q 008276 184 ARRVLNDMPS---------K-DVVTWNSMVAGYAQ---NGRFDEALDVCREMES-----LRIKPDADTMASLLPSVTNTS 245 (571)
Q Consensus 184 A~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~~ 245 (571)
+...+..... | +...+......+.. .|++++|+..|+++.+ ....|+.....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~---------- 233 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK---------- 233 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHH----------
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccC----------
Confidence 2222222211 2 23445555555554 8999999999999877 32233321000
Q ss_pred CccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHH
Q 008276 246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV 325 (571)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 325 (571)
+.+...+..+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++.+
T Consensus 234 ---------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 296 (514)
T 2gw1_A 234 ---------------EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKA 296 (514)
T ss_dssp ---------------HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1135678888999999999999999999998865 33888888999999999999999999999
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008276 326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA 402 (571)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 402 (571)
.+.. +.+...+..+..++...|++++|...++.+.+ .+...+..+...+...|++++|...++++.+. .+.+...
T Consensus 297 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~ 374 (514)
T 2gw1_A 297 LKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEV 374 (514)
T ss_dssp HTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHH
T ss_pred hhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHH
Confidence 9875 45677888999999999999999999998753 46778999999999999999999999999884 2335678
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 008276 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGR---AGKVEEAYDLIKQM-PMEP-NERIWGS 473 (571)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~ 473 (571)
+..+...+...|++++|...++.+.+.....++ ...+..+...+.. .|++++|.+.++++ ...| +..++..
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 454 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG 454 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 888999999999999999999998775333333 4488899999999 99999999999987 3344 6788899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 008276 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508 (571)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 508 (571)
+...+...|++++|...++++.+++|.++..+..+
T Consensus 455 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999999999999999999999988877766
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=6.7e-23 Score=209.96 Aligned_cols=418 Identities=10% Similarity=0.020 Sum_probs=193.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 008276 97 FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYG 176 (571)
Q Consensus 97 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 176 (571)
.|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.++++++.+ +.+...+..+..++.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 34555555555555555655555555432 2244455555555555556666666655555543 334455555556666
Q ss_pred hCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHC------CCCCCHHHHHHHHHHhcCCCCccHH
Q 008276 177 KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL------RIKPDADTMASLLPSVTNTSPENVL 250 (571)
Q Consensus 177 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~~ 250 (571)
..|++++|...|+.+. .+....+..+..+...+....|...++++... ...|+.......+..+ . ..
T Consensus 105 ~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~--~~ 177 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF----D--SH 177 (537)
T ss_dssp HHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS----C--HH
T ss_pred HcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc----C--hH
Confidence 6666666666554222 11111122222333334445555555555332 1223332222222111 0 11
Q ss_pred HHHHHHhhCCCCChh---hHHHHHHHHH--------HcCCchHHHHHHHHHHHCCCCCC--------HHHHHHHHHHhcc
Q 008276 251 SVKEMFLKLDNKNLV---SWNVMIAVYA--------NNSMPAEAVDLYLQMEVHGIEPN--------AISVASVLPACGD 311 (571)
Q Consensus 251 ~a~~~~~~~~~~~~~---~~~~l~~~~~--------~~g~~~~A~~~~~~m~~~g~~~~--------~~~~~~ll~~~~~ 311 (571)
.+...+......+.. ....+...+. ..|++++|..+++++.+.. |+ ..++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHh
Confidence 111111111111111 1111111111 1134555555555555432 22 1123334444555
Q ss_pred CCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 008276 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALF 388 (571)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 388 (571)
.|+++.|...++.+.+.. |+...+..+...+...|++++|...++.+.+ .+..+|..+...+...|++++|+..+
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 555555555555555543 2244555555555555555555555555432 23445555555555555666666655
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC---
Q 008276 389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PM--- 464 (571)
Q Consensus 389 ~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--- 464 (571)
+++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ..
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 5555521 112345555555555556666666655555543 1233445555555555556666655555554 00
Q ss_pred CC----CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 465 EP----NERIWGSLVAACCLY----------SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 465 ~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
.+ ....+......+... |++++|+..++++.+..|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 00 111122233344444 5566666666666665555555566666666666666666665555544
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1e-22 Score=203.72 Aligned_cols=326 Identities=12% Similarity=0.063 Sum_probs=238.0
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008276 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP 239 (571)
Q Consensus 163 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 239 (571)
.+...+..+...+.+.|++++|+.+|+.+.+ .+..+|..+..++...|++++|+..|+++.+.+ |+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~--------- 92 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MD--------- 92 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC---------
Confidence 3455666666667777777777777766543 345566677777777777777777777766532 22
Q ss_pred HhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH----HHHHHH----------
Q 008276 240 SVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA----ISVASV---------- 305 (571)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~l---------- 305 (571)
+..++..++.+|...|++++|...|+++.+.. |+. ..+..+
T Consensus 93 -----------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~ 147 (450)
T 2y4t_A 93 -----------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLR 147 (450)
T ss_dssp -----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777776542 332 333333
Q ss_pred --HHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC
Q 008276 306 --LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQ 380 (571)
Q Consensus 306 --l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~ 380 (571)
...+...|++++|...++.+.+.. +.+..++..+..+|.+.|++++|...|+.+.+ .+..+|..++..|...|+
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 334677788888888888888765 45677788888888888888888888888764 467788888889999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHH------------HHHhhcCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHH
Q 008276 381 GYDAVALFSKMLMSGLCPDSI-AFVSV------------LSACSHAGLLEEGRYYFKIMTEQYKLVPR--IEHFACLVDL 445 (571)
Q Consensus 381 ~~~a~~~~~~m~~~g~~p~~~-~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~ 445 (571)
+++|+..|+++.+ ..|+.. .+..+ ...+...|++++|..+|+.+.+.....+. ...+..++.+
T Consensus 227 ~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 227 HELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 9999999998887 445433 44433 77888899999999999998875221111 3478888999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH------------
Q 008276 446 LGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI------------ 511 (571)
Q Consensus 446 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------ 511 (571)
+.+.|++++|...++++ ...| +..+|..+..+|...|++++|...+++++++.|+++.++..++.+
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 384 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDY 384 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhH
Confidence 99999999999999887 4445 678899999999999999999999999999999999998888844
Q ss_pred HHhcC-----CHHHHHHHHHH
Q 008276 512 YAKAG-----RWGDVKRVRKF 527 (571)
Q Consensus 512 ~~~~g-----~~~~A~~~~~~ 527 (571)
|...| +.+++.+.+++
T Consensus 385 y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 385 YKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp GGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHhCCCccCCHHHHHHHHHH
Confidence 44445 55667777765
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.9e-22 Score=200.35 Aligned_cols=358 Identities=11% Similarity=-0.025 Sum_probs=243.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCC
Q 008276 134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNG 210 (571)
Q Consensus 134 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 210 (571)
..+...+.+.|++++|..+++.+++.. +.+..++..+..++...|++++|...|+++.+ .+..++..+..++.+.|
T Consensus 30 ~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 30 LELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG 108 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 333333344444444444444443332 22334444444444444444444444444332 23445566666666666
Q ss_pred CchHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHH
Q 008276 211 RFDEALDVCREMESLRIKPDA----DTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286 (571)
Q Consensus 211 ~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 286 (571)
++++|...|+++.+. .|+. ..+..+...+. ...+..+...+...|++++|+.+
T Consensus 109 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 109 KLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDE---------------------MQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp CHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666553 2332 22222221110 12244556678889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-
Q 008276 287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q- 363 (571)
Q Consensus 287 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~- 363 (571)
|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+.+.+ |
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99998754 4567888889999999999999999999998765 55678888999999999999999999998864 3
Q ss_pred ChhHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 008276 364 DVVSWTSM------------ISAYGMSGQGYDAVALFSKMLMSGLCPD-----SIAFVSVLSACSHAGLLEEGRYYFKIM 426 (571)
Q Consensus 364 ~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 426 (571)
+...+..+ ...+.+.|++++|...|+++.+ ..|+ ...+..+...+.+.|++++|...++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34445444 7889999999999999999998 4555 347888889999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHhcC-----CHHHH
Q 008276 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAA------------CCLYS-----NMDIG 487 (571)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~------------~~~~g-----~~~~A 487 (571)
.+. .+.+...|..+..+|...|++++|...++++ ...| +...+..+..+ |...| +.+++
T Consensus 322 ~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~ 399 (450)
T 2y4t_A 322 LQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHH
T ss_pred HHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHH
Confidence 874 3456788999999999999999999999988 6667 45666666533 33344 66788
Q ss_pred HHHHHH-HHhhCCCCch----------hHHHHHHHHHhcCCHHHH
Q 008276 488 ILAADH-IFHLAPNQSG----------YYVLLSNIYAKAGRWGDV 521 (571)
Q Consensus 488 ~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~A 521 (571)
.+.|++ +.+..|++.. .+..+..+|...|+.+.+
T Consensus 400 ~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 400 IKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 888886 6666665422 445566666666655443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=5.2e-22 Score=203.32 Aligned_cols=442 Identities=10% Similarity=0.004 Sum_probs=332.5
Q ss_pred ccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHH
Q 008276 27 TLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIR 103 (571)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 103 (571)
....+..++..+.+.|++++|...|..++ +.. +.++..+..+..+|...|++++|++.|+.+.. .+...|..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAI-ELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH-hhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34566788999999999999999999999 665 45789999999999999999999999998753 46778999999
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCCH
Q 008276 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG--LDYNLFNGNGLVAMYGKCGCL 181 (571)
Q Consensus 104 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~ 181 (571)
.+...|++++|+..|+.+.. .|+... ..+..+...+....+...++.+.... ..+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL---NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhc---CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 99999999999999974432 233221 12333344455677888888875531 111111223345556778888
Q ss_pred HHHHHHHccCCCCCch---hHHHHHHHHHhC--------CCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCccH
Q 008276 182 KEARRVLNDMPSKDVV---TWNSMVAGYAQN--------GRFDEALDVCREMESLRIKPDA-DTMASLLPSVTNTSPENV 249 (571)
Q Consensus 182 ~~A~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~ 249 (571)
+.+...+......+.. ....+...+... |++++|..+++++.+. .|+. ..+..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~------------ 242 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENA------------ 242 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH------------
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHH------------
Confidence 8888888777764433 333333333222 4788888888888764 2331 111111
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcC
Q 008276 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK 329 (571)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 329 (571)
..++..+...+...|++++|...++++.+. .|+...+..+...+...|+++.|...++.+.+..
T Consensus 243 --------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 243 --------------ALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred --------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 234667778899999999999999999885 4668888899999999999999999999999876
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008276 330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406 (571)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 406 (571)
+.+..++..+...+...|++++|...++.+.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 307 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 384 (537)
T 3fp2_A 307 -PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFF 384 (537)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 45678899999999999999999999998864 356789999999999999999999999999852 3356688889
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCC-CHHH
Q 008276 407 LSACSHAGLLEEGRYYFKIMTEQYKLVP----RIEHFACLVDLLGRA----------GKVEEAYDLIKQM-PMEP-NERI 470 (571)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~ 470 (571)
...+...|++++|...|+++.+.....+ ....+..+...+... |++++|...|+++ ...| +..+
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 464 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA 464 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999999876522222 223345566778888 9999999999988 4344 6788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 008276 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL 507 (571)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 507 (571)
+..+...+...|++++|...|+++.++.|.+......
T Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 465 KIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9999999999999999999999999999988766543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.5e-19 Score=173.01 Aligned_cols=310 Identities=12% Similarity=0.041 Sum_probs=184.1
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 008276 166 FNGNGLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242 (571)
Q Consensus 166 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 242 (571)
..+..+...+...|++++|...|+.+.+ .+..++..+...+...|++++|+..++++.+. .|+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~------------ 69 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMD------------ 69 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC------------
Confidence 3444455555556666666666555432 23445666666666666666666666666542 122
Q ss_pred CCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCC----CHHHHHHH------------H
Q 008276 243 NTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP----NAISVASV------------L 306 (571)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~l------------l 306 (571)
+...+..+...+...|++++|...|+++.+. .| +...+..+ .
T Consensus 70 --------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a 127 (359)
T 3ieg_A 70 --------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQA 127 (359)
T ss_dssp --------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------cchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHH
Confidence 2344556666666667777777777666653 23 22222222 3
Q ss_pred HHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHH
Q 008276 307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYD 383 (571)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 383 (571)
..+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++.+.+ .+...+..+...+...|++++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 45566677777777777666654 34556666666677777777777777666543 345566677777777777777
Q ss_pred HHHHHHHHHHCCCCCCH-HHHH------------HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHh
Q 008276 384 AVALFSKMLMSGLCPDS-IAFV------------SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI--EHFACLVDLLGR 448 (571)
Q Consensus 384 a~~~~~~m~~~g~~p~~-~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 448 (571)
|...+++..+. .|+. ..+. .+...+...|++++|...++.+.+.....+.. ..+..+...+..
T Consensus 207 A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 284 (359)
T 3ieg_A 207 SLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSK 284 (359)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 77777776663 3332 2222 22445666777777777777766542111111 224445666677
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 008276 449 AGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514 (571)
Q Consensus 449 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 514 (571)
.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++.+|+++.++..+..++..
T Consensus 285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 285 DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 77777777777666 3234 566666677777777777777777777777777777666666555443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=3e-19 Score=172.49 Aligned_cols=300 Identities=12% Similarity=0.036 Sum_probs=249.7
Q ss_pred CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHH
Q 008276 195 DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274 (571)
Q Consensus 195 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 274 (571)
++..+..+...+...|++++|+..|+++.+. .|+ +...+..+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~--------------------------------~~~~~~~~a~~~ 47 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPD--------------------------------NYIAYYRRATVF 47 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------------------------------CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccc--------------------------------cHHHHHHHHHHH
Confidence 3456778889999999999999999998763 232 456788889999
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCC--CChhHHHHH------------
Q 008276 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ--PNLRLENAL------------ 340 (571)
Q Consensus 275 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------ 340 (571)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.... .+...+..+
T Consensus 48 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 126 (359)
T 3ieg_A 48 LAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ 126 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998764 346688889999999999999999999999987520 244444444
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH
Q 008276 341 VDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417 (571)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 417 (571)
...+...|++++|...++.+.+ .+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|+++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHH
Confidence 5788999999999999998764 46778999999999999999999999999985 2346678999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHH
Q 008276 418 EGRYYFKIMTEQYKLVPRIEHFA------------CLVDLLGRAGKVEEAYDLIKQM-PMEPN-E----RIWGSLVAACC 479 (571)
Q Consensus 418 ~a~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~ 479 (571)
+|...++.+.+.. +.+...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+.
T Consensus 206 ~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 206 LSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 9999999998752 23333332 3367789999999999999987 33443 3 23556778899
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
..|++++|+..++++.+..|+++.++..++.+|...|++++|...+++..+..
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999998764
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.4e-18 Score=164.11 Aligned_cols=288 Identities=14% Similarity=0.032 Sum_probs=206.7
Q ss_pred CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHH
Q 008276 195 DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY 274 (571)
Q Consensus 195 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 274 (571)
+...+..++..+...|++++|+++|+++.+.. |+ +...+..++.++
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~--------------------------------~~~~~~~~~~~~ 66 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PF--------------------------------HASCLPVHIGTL 66 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------------------------CTTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC--------------------------------ChhhHHHHHHHH
Confidence 44555666666666677777777776665431 21 234455555666
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 008276 275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS-ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353 (571)
Q Consensus 275 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (571)
...|++++|..+++++.+.. +.+...+..+...+...| ++++|...++.+.+.. +.+...+..+..++...|++++|
T Consensus 67 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 144 (330)
T 3hym_B 67 VELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQA 144 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHH
Confidence 66777777777777766543 334556666666666677 6777777777776654 34456667777777777888888
Q ss_pred HHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008276 354 RTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430 (571)
Q Consensus 354 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 430 (571)
...++.+.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 145 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 145 MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 777777653 345667778888888888888888888888742 3355678888888888899999999888887642
Q ss_pred C-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276 431 K-------LVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501 (571)
Q Consensus 431 ~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 501 (571)
. .+.....+..+..++...|++++|.+.++++ ...| +...|..+...+...|++++|...++++.+..|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 1 1334578888899999999999999998887 3334 56788888889999999999999999999999999
Q ss_pred chhHHHHHHHHH-hcCCHH
Q 008276 502 SGYYVLLSNIYA-KAGRWG 519 (571)
Q Consensus 502 ~~~~~~l~~~~~-~~g~~~ 519 (571)
+.++..++.++. ..|+.+
T Consensus 304 ~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 304 TFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHTTTTC--
T ss_pred hHHHHHHHHHHHHHhCchh
Confidence 999999998884 556543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.4e-18 Score=164.09 Aligned_cols=266 Identities=10% Similarity=-0.028 Sum_probs=230.2
Q ss_pred CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 008276 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341 (571)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (571)
.+...+..++..+...|++++|..+|+++.+.. +.+...+..++.++...|++++|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456778888999999999999999999998764 3445566667788889999999999999999875 55678888899
Q ss_pred HHHHhcC-CHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH
Q 008276 342 DMYAKCG-SLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417 (571)
Q Consensus 342 ~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 417 (571)
..+...| ++++|...|+.+.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 356789999999999999999999999999852 224567777899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCHHH
Q 008276 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PM----------EPNERIWGSLVAACCLYSNMDI 486 (571)
Q Consensus 418 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g~~~~ 486 (571)
+|...++++.+. .+.+...+..+...+...|++++|...++++ .. .....+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999863 3556788999999999999999999999877 11 2346788999999999999999
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 487 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
|+..++++.+..|++..++..++.+|.+.|++++|.+.+++..+..
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999876543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=1.1e-16 Score=161.44 Aligned_cols=366 Identities=11% Similarity=-0.012 Sum_probs=244.1
Q ss_pred ChhhHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhc----CCChHHHHHHHHHHHHhCCCCch
Q 008276 94 NVVFFNVLIRSYVN----NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG----SNSLLVGLQIHCSVVKVGLDYNL 165 (571)
Q Consensus 94 ~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~ 165 (571)
+...+..+...|.. .+++++|+..|++..+.| +...+..+...+.. .+++++|.+.+++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444444444444 455555555555555432 33344444444444 555555555555555543 33
Q ss_pred hHHHHHHHHHHh----CCCHHHHHHHHccCCC-CCchhHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 008276 166 FNGNGLVAMYGK----CGCLKEARRVLNDMPS-KDVVTWNSMVAGYAQ----NGRFDEALDVCREMESLRIKPDADTMAS 236 (571)
Q Consensus 166 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 236 (571)
..+..|...|.. .+++++|...|+...+ .+...+..+...|.. .+++++|++.|++..+.|
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---------- 181 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---------- 181 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------
Confidence 444445555555 5566666666655443 244455556666655 567777777777765532
Q ss_pred HHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHH----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-
Q 008276 237 LLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN----NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD- 311 (571)
Q Consensus 237 ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~- 311 (571)
+..++..+...|.. .+++++|..+|++..+.| +...+..+...+..
T Consensus 182 --------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g 232 (490)
T 2xm6_A 182 --------------------------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFG 232 (490)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred --------------------------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 23445556666666 677888888888777654 34455555555543
Q ss_pred ---CCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhc-----
Q 008276 312 ---LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK----CGSLTEARTVFDQMRC-QDVVSWTSMISAYGMS----- 378 (571)
Q Consensus 312 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~----- 378 (571)
.+++++|...|+...+.+ +...+..+...|.. .++.++|...|+...+ .+...+..+...|...
T Consensus 233 ~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~ 309 (490)
T 2xm6_A 233 IGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVA 309 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBC
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCc
Confidence 677888888888777654 34455556666666 7888888888887764 4666777788888777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCC
Q 008276 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG---LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR----AGK 451 (571)
Q Consensus 379 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 451 (571)
+++++|+..|++..+.| +...+..+...+...| ++++|.++|++..+. .+...+..+...|.. .++
T Consensus 310 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCC
Confidence 89999999999988864 4456666777776656 788999999998874 467778888888888 789
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHh
Q 008276 452 VEEAYDLIKQMPMEPNERIWGSLVAACCL----YSNMDIGILAADHIFHLAPN---QSGYYVLLSNIYAK 514 (571)
Q Consensus 452 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 514 (571)
+++|.+.|++.-...++..+..+...|.. .+++++|...|+++.+.+|+ ++.+...++.++..
T Consensus 383 ~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 383 EQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999987223367788888888887 89999999999999999854 67677777665544
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=8.7e-19 Score=170.04 Aligned_cols=298 Identities=11% Similarity=-0.019 Sum_probs=204.4
Q ss_pred HHhCCCHHHHHH-HHccCCC--C-----CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCC
Q 008276 175 YGKCGCLKEARR-VLNDMPS--K-----DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP 246 (571)
Q Consensus 175 ~~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 246 (571)
+...|++++|.. .|++... + +...+..+...+...|++++|+..|+++.+. .|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~---------------- 96 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPK---------------- 96 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTT----------------
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC----------------
Confidence 334467777776 6665443 1 2445666777777777777777777777653 222
Q ss_pred ccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 008276 247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE 326 (571)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 326 (571)
+..++..+..++...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 97 ----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 97 ----------------HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567777777777777777777777776653 3355666666666777777777777777766
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHH
Q 008276 327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD---SIAF 403 (571)
Q Consensus 327 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~ 403 (571)
+... .+...+..+... .. ...+ ...+..+... ...|++++|...|+++.+. .|+ ..++
T Consensus 160 ~~~~-~~~~~~~~~~~~-------~~-------~~~~-~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~ 220 (368)
T 1fch_A 160 RYTP-AYAHLVTPAEEG-------AG-------GAGL-GPSKRILGSL-LSDSLFLEVKELFLAAVRL--DPTSIDPDVQ 220 (368)
T ss_dssp HTST-TTGGGCC------------------------------CTTHHH-HHHHHHHHHHHHHHHHHHH--STTSCCHHHH
T ss_pred HhCc-CcHHHHHHHHHH-------hh-------hhcc-cHHHHHHHHH-hhcccHHHHHHHHHHHHHh--CcCcccHHHH
Confidence 6542 111111111000 00 0000 0111122333 3889999999999999884 444 6788
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 008276 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLY 481 (571)
Q Consensus 404 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 481 (571)
..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...| +..++..+...+...
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 89999999999999999999999874 3445788999999999999999999999987 4444 678899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCC-----------chhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276 482 SNMDIGILAADHIFHLAPNQ-----------SGYYVLLSNIYAKAGRWGDVKRVRKFM 528 (571)
Q Consensus 482 g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m 528 (571)
|++++|...++++.+..|++ ..+|..++.+|...|++++|..++++.
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 99999999999999998877 789999999999999999999987643
No 19
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=4.6e-15 Score=156.82 Aligned_cols=452 Identities=14% Similarity=0.062 Sum_probs=329.4
Q ss_pred cccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccC------------CC
Q 008276 26 YTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT------------NK 93 (571)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------~~ 93 (571)
......+.|+...-+..++.....+++... ..|. .++.++|+|+..|...++-. .+.+.+-. ++
T Consensus 837 ~~~~~~~~lv~~~ekrnrLkll~p~LE~~~-~~g~-~~~~~hnalakiyid~n~np--e~fL~~n~~yd~~~vgkyce~r 912 (1630)
T 1xi4_A 837 RGQFSTDELVAEVEKRNRLKLLLPWLEARI-HEGC-EEPATHNALAKIYIDSNNNP--ERFLRENPYYDSRVVGKYCEKR 912 (1630)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hCCC-CCHHHHHHHHHHHhccCCCH--HHHhhccCcccHHHHHHHHHhc
Confidence 456667788888888888888888888888 6674 49999999999999765322 22222211 11
Q ss_pred Chh-----------------------hHHHHHHHHHHcCChhHHHHH-----------HHHHHhCC--CCCCcccHHHHH
Q 008276 94 NVV-----------------------FFNVLIRSYVNNYLYYDALHV-----------YKNMSVHG--FDPDCYTYPCVL 137 (571)
Q Consensus 94 ~~~-----------------------~~~~li~~~~~~~~~~~A~~~-----------~~~m~~~g--~~p~~~~~~~li 137 (571)
|+. .|....+-+.+..+.+-=-.+ .++-.... -.-++.--...+
T Consensus 913 Dp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~v 992 (1630)
T 1xi4_A 913 DPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTV 992 (1630)
T ss_pred CcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHH
Confidence 211 122233333333332211111 11111000 012333345577
Q ss_pred HHhhcCCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHH
Q 008276 138 KACSGSNSLLVGLQIHCSVVKVG--LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA 215 (571)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 215 (571)
++|...|.+.++.++++...-.+ +..+....+.++.+..+. +..+...+.+....-+ ...+...+...|.+++|
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEA 1068 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHH
Confidence 88888999999999999888432 123445666677766666 5566666666655333 44577888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 008276 216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295 (571)
Q Consensus 216 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 295 (571)
..+|++.. -.....+.++..... +++|.++.++.. +..+|..+..++.+.|++++|++.|.+.
T Consensus 1069 f~IYkKa~-----~~~~A~~VLie~i~n-----ldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA----- 1131 (1630)
T 1xi4_A 1069 FAIFRKFD-----VNTSAVQVLIEHIGN-----LDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA----- 1131 (1630)
T ss_pred HHHHHHcC-----CHHHHHHHHHHHHhh-----HHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----
Confidence 99999862 222233444443322 888888888775 4778999999999999999999999653
Q ss_pred CCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 008276 296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375 (571)
Q Consensus 296 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 375 (571)
-|...|..++.+|.+.|+++++.+++....+.. ++....+.++.+|++.+++++...+. ..++...|..+...|
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRC 1205 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHH
Confidence 567888899999999999999999999988765 33333445899999999999655553 456777788899999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008276 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455 (571)
Q Consensus 376 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (571)
...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+..++...|++..|
T Consensus 1206 e~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999985 37999999999999999999999877 3558899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc--CCHHHHHHHHH
Q 008276 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA--GRWGDVKRVRK 526 (571)
Q Consensus 456 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 526 (571)
......+ ..++..+..++..|.+.|.+++|+.+++.++.++|.+...|..++.+|.+. ++..++.++|.
T Consensus 1270 ~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1270 QMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8877654 456667779999999999999999999999999999999998888887764 56666666655
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=7.7e-16 Score=155.21 Aligned_cols=362 Identities=13% Similarity=0.006 Sum_probs=293.3
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHhhc----CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----CCCHHHHH
Q 008276 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSG----SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK----CGCLKEAR 185 (571)
Q Consensus 114 A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~ 185 (571)
++..+++..+.| +...+..+...+.. .+++++|...++...+.| +...+..|...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 345555555543 55666666666666 789999999999998865 56677888888888 89999999
Q ss_pred HHHccCCC-CCchhHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCC
Q 008276 186 RVLNDMPS-KDVVTWNSMVAGYAQ----NGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD 260 (571)
Q Consensus 186 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~ 260 (571)
..|++..+ .+...+..|...|.. .+++++|+..|++..+.|
T Consensus 100 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------------------------------- 145 (490)
T 2xm6_A 100 IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---------------------------------- 145 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------------------------------
Confidence 99988765 466677778888887 788999999998887653
Q ss_pred CCChhhHHHHHHHHHH----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc----CCchHHHHHHHHHHHHcCCCC
Q 008276 261 NKNLVSWNVMIAVYAN----NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD----LSALLLGRKIHRYVERKKLQP 332 (571)
Q Consensus 261 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 332 (571)
+..++..|...|.. .+++++|+++|++..+.| +...+..+...+.. .+++++|...|+...+.+
T Consensus 146 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 217 (490)
T 2xm6_A 146 --RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--- 217 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---
Confidence 24556667777776 789999999999998865 56677777777766 899999999999999875
Q ss_pred ChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHH
Q 008276 333 NLRLENALVDMYAK----CGSLTEARTVFDQMRC-QDVVSWTSMISAYGM----SGQGYDAVALFSKMLMSGLCPDSIAF 403 (571)
Q Consensus 333 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~ 403 (571)
+...+..+...|.. .+++++|..+|+...+ .+...+..+...|.. .+++++|+.+|++..+.| +...+
T Consensus 218 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~ 294 (490)
T 2xm6_A 218 DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQ 294 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHH
Confidence 45667778888876 7899999999998765 567778888888888 899999999999998864 45567
Q ss_pred HHHHHHhhcC-----CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHH
Q 008276 404 VSVLSACSHA-----GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG---KVEEAYDLIKQMPMEPNERIWGSLV 475 (571)
Q Consensus 404 ~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~ 475 (571)
..+...+... +++++|...|++..+. .+...+..+...|...| +.++|.+.|++.-...++..+..+.
T Consensus 295 ~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg 370 (490)
T 2xm6_A 295 YYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLG 370 (490)
T ss_dssp HHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777776 8999999999999874 35567778888888766 7899999999882235788888899
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 008276 476 AACCL----YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK----AGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 476 ~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 532 (571)
..|.. .+++++|+..|+++.+.+ ++.++..++.+|.+ .+++++|...+++..+.+
T Consensus 371 ~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 371 NALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99988 899999999999998865 57899999999998 899999999999998876
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=6.8e-15 Score=155.53 Aligned_cols=412 Identities=12% Similarity=0.056 Sum_probs=300.1
Q ss_pred hccccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhc--CCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHH
Q 008276 22 LSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQH--LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN 99 (571)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 99 (571)
+...-.+......++++...|.+.+|.++++++. ..+ +..+....+.|+....+. +..+..+..+....-+ ..
T Consensus 979 L~e~~~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~ 1053 (1630)
T 1xi4_A 979 LSETQDPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---AP 1053 (1630)
T ss_pred cccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HH
Confidence 3334444555667888889999999999999998 332 123456667777777766 4455555555444222 55
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 008276 100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG 179 (571)
Q Consensus 100 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 179 (571)
.+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++...|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence 588899999999999999999631 1222233332 678899999998855 35788899999999999
Q ss_pred CHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhC
Q 008276 180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKL 259 (571)
Q Consensus 180 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~ 259 (571)
++++|+..|.+. .|...|..++.++.+.|++++|.+.|...++.. ++....+.+..++++.+. ++......
T Consensus 1120 ~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~r--leele~fI--- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR--LAELEEFI--- 1190 (1630)
T ss_pred CHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcC--HHHHHHHH---
Confidence 999999999765 677888999999999999999999999887754 333233347777887765 66554443
Q ss_pred CCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHH
Q 008276 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339 (571)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (571)
..++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.++.. .+..+|..
T Consensus 1191 ~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1191 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 4556677888999999999999999999884 48889999999999999999999876 45688888
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcC--CCH
Q 008276 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-SIAFVSVLSACSHA--GLL 416 (571)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~--~~~ 416 (571)
+..+|...|++..|...... ...+...+..++..|.+.|.+++|+.+++..... .+. ...|.-+...+++. ++.
T Consensus 1256 v~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHH
Confidence 88899999999999988775 3345666778999999999999999999887763 343 33666666655553 344
Q ss_pred HHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHhC--------------CCCCCHHHHHHHHH
Q 008276 417 EEGRYYFKIMTEQYKLVP------RIEHFACLVDLLGRAGKVEEAYDLIKQM--------------PMEPNERIWGSLVA 476 (571)
Q Consensus 417 ~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------~~~p~~~~~~~l~~ 476 (571)
.++.+.|. .+.++++ +...|.-++..|.+.|+++.|....-+- ....++..|--.+.
T Consensus 1333 mEhlk~f~---~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~ 1409 (1630)
T 1xi4_A 1333 REHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQ 1409 (1630)
T ss_pred HHHHHHHH---HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHH
Confidence 44444444 3324444 4577999999999999999998433222 12235556655555
Q ss_pred HHHhcC
Q 008276 477 ACCLYS 482 (571)
Q Consensus 477 ~~~~~g 482 (571)
-|....
T Consensus 1410 Fyl~~~ 1415 (1630)
T 1xi4_A 1410 FYLEFK 1415 (1630)
T ss_pred HHHhhC
Confidence 555443
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=5e-18 Score=160.97 Aligned_cols=291 Identities=9% Similarity=0.055 Sum_probs=113.0
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhH
Q 008276 34 CNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113 (571)
Q Consensus 34 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 113 (571)
+..++.+.|++++|.+.++++. ++.+|..|+.++.+.|++++|++.|.+. +|...|..++..+...|++++
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHH
Confidence 4455667888999999998774 3458899999999999999999999654 566789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC
Q 008276 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS 193 (571)
Q Consensus 114 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 193 (571)
|+..++..++. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 99977766663 4567888889999999999999888874 467779999999999999999999999877
Q ss_pred CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHH
Q 008276 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV 273 (571)
Q Consensus 194 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 273 (571)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...++ ++.|......+. .++.....++..
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~e--f~lA~~~~l~L~-~~ad~l~~lv~~ 216 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKE--FRLAQMCGLHIV-VHADELEELINY 216 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTC--HHHHHHTTTTTT-TCHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCc--HHHHHHHHHHHH-hCHhhHHHHHHH
Confidence 47899999999999999999999888 266777777777777776 666655555443 344445556777
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC--CchHHHHHHHHHHHHcCCCC------ChhHHHHHHHHHH
Q 008276 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL--SALLLGRKIHRYVERKKLQP------NLRLENALVDMYA 345 (571)
Q Consensus 274 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~ 345 (571)
|.+.|++++|+.+++...... +-....|+-+...+++- ++..+..+.|.. +.+++| +...|.-+...|.
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777765433 33344454444444333 333333333321 122222 3445666666666
Q ss_pred hcCCHHHHHHHHhh
Q 008276 346 KCGSLTEARTVFDQ 359 (571)
Q Consensus 346 ~~~~~~~a~~~~~~ 359 (571)
.-++++.|....-+
T Consensus 294 ~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 294 KYEEYDNAIITMMN 307 (449)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred hhchHHHHHHHHHh
Confidence 66777666654433
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=4.6e-16 Score=158.54 Aligned_cols=410 Identities=9% Similarity=0.011 Sum_probs=286.5
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008276 94 NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173 (571)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 173 (571)
|...|..++. +.+.|++++|..+|+++.+. .+.+...|...+..+.+.|+++.|..+|++++... |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 6778888888 47889999999999999875 34455678888888889999999999999998764 57777777775
Q ss_pred HH-HhCCCHHHHHH----HHccCC-----C-CCchhHHHHHHHHHh---------CCCchHHHHHHHHHHHCCCCCCHHH
Q 008276 174 MY-GKCGCLKEARR----VLNDMP-----S-KDVVTWNSMVAGYAQ---------NGRFDEALDVCREMESLRIKPDADT 233 (571)
Q Consensus 174 ~~-~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~t 233 (571)
.. ...|++++|.+ +|+... . ++...|...+..... .|+++.|..+|++..+....+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 45677766654 565432 1 345677777776554 6788899999998887211111122
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHH------HCC---CCCC------
Q 008276 234 MASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME------VHG---IEPN------ 298 (571)
Q Consensus 234 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~------~~g---~~~~------ 298 (571)
|.......... +..+...++. ...+++..|..++.++. +.. ++|+
T Consensus 168 ~~~~~~~e~~~------------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 168 WRDYNKYEEGI------------------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHHH------------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHhh------------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 22211100000 0000111111 12345666776666532 211 2343
Q ss_pred --HHHHHHHHHHhcc----CCch----HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCCHH-------HHH
Q 008276 299 --AISVASVLPACGD----LSAL----LLGRKIHRYVERKKLQPNLRLENALVDMYAK-------CGSLT-------EAR 354 (571)
Q Consensus 299 --~~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~ 354 (571)
...|...+..... .++. ..+..+|+.+.... +.+...|..+...+.+ .|+++ +|.
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 1344444332211 2233 36778888888764 5567888888887775 68876 899
Q ss_pred HHHhhCCC---C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276 355 TVFDQMRC---Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS--IAFVSVLSACSHAGLLEEGRYYFKIMTE 428 (571)
Q Consensus 355 ~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 428 (571)
.+|++..+ | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|..+|++..+
T Consensus 307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99998764 4 567899999999999999999999999999 56653 4788888888889999999999999986
Q ss_pred hcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch--
Q 008276 429 QYKLVPRIEHFACLVDL-LGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG-- 503 (571)
Q Consensus 429 ~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-- 503 (571)
. .+.+...|...+.. +...|+.++|..+|++. ...| +...|..++..+.+.|+.++|..+|++++...|.++.
T Consensus 385 ~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 385 D--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp C--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred c--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 4 12233434333322 34689999999999987 3345 6789999999999999999999999999998876655
Q ss_pred --hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 504 --YYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 504 --~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
.|...+......|+.+.+..+.+++.+.-
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 78888888888999999999999887653
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=3.6e-18 Score=165.48 Aligned_cols=261 Identities=9% Similarity=-0.085 Sum_probs=218.8
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 008276 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342 (571)
Q Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 342 (571)
+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+...+...|++++|...|+.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45668899999999999999999999998864 4577889999999999999999999999999876 556888999999
Q ss_pred HHHhcCCHHHHHHHHhhCCC--CC-----------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 008276 343 MYAKCGSLTEARTVFDQMRC--QD-----------VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC-PDSIAFVSVLS 408 (571)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~--~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~ 408 (571)
+|...|++++|...|+++.+ |+ ...+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999998864 21 223445678899999999999999999985321 15778999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 008276 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDI 486 (571)
Q Consensus 409 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 486 (571)
.+...|++++|...|+++.+. .+.+..++..+..+|...|++++|++.|+++ ...| +..+|..+...|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999874 3456789999999999999999999999988 4455 58889999999999999999
Q ss_pred HHHHHHHHHhhCCC------------CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276 487 GILAADHIFHLAPN------------QSGYYVLLSNIYAKAGRWGDVKRVRKF 527 (571)
Q Consensus 487 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 527 (571)
|...+++++++.|. +..+|..++.++...|+.+.|..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998876 367899999999999999999888764
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=4.2e-16 Score=158.84 Aligned_cols=403 Identities=11% Similarity=0.076 Sum_probs=255.8
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHcccCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 008276 63 NPSIGLKLMRTYGACGQMVDTRHVFDEITN--K-NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA 139 (571)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 139 (571)
+...|..++. +.+.|+++.|..+|+++.. | +...|...+..+.+.|++++|..+|++.... .|+...|...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 5556666665 3556666666666666543 2 4445666666666666666777776666654 2455445444432
Q ss_pred h-hcCCChHHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------CCCHHHHHHHHccCCC-CCc---hhH
Q 008276 140 C-SGSNSLLVGLQ----IHCSVVKV-GLDY-NLFNGNGLVAMYGK---------CGCLKEARRVLNDMPS-KDV---VTW 199 (571)
Q Consensus 140 ~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~-~~~---~~~ 199 (571)
. ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++..+ |.. ..|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 2 23444444443 45544432 3332 34555555555443 5677777777776554 221 122
Q ss_pred HHHHHHHH-------------hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhC---CCCC
Q 008276 200 NSMVAGYA-------------QNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKL---DNKN 263 (571)
Q Consensus 200 ~~li~~~~-------------~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~---~~~~ 263 (571)
........ ..++++.|..++.++.. ..+.++.. .+|+
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~---------------------------~~~~l~~~~~~~~p~ 221 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYET---------------------------VMKGLDRNAPSVPPQ 221 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHH---------------------------HHHHCCSSSCCCCCC
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHH---------------------------HHHHhccccccCCCC
Confidence 22211100 12334444444443211 00011110 0111
Q ss_pred --------hhhHHHHHHHHHHc----CCc----hHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-------CCchH----
Q 008276 264 --------LVSWNVMIAVYANN----SMP----AEAVDLYLQMEVHGIEPNAISVASVLPACGD-------LSALL---- 316 (571)
Q Consensus 264 --------~~~~~~l~~~~~~~----g~~----~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-------~~~~~---- 316 (571)
...|...+...... ++. +++..+|++..... +-+...|......+.. .|+++
T Consensus 222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 13344444332221 232 37778888887752 3456777777766654 68877
Q ss_pred ---HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-h-hHHHHHHHHHHhcCChHHHHHHHH
Q 008276 317 ---LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QD-V-VSWTSMISAYGMSGQGYDAVALFS 389 (571)
Q Consensus 317 ---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~-~~~~~li~~~~~~~~~~~a~~~~~ 389 (571)
+|..+++...+.-.+.+...+..++..+.+.|++++|..+|+.+.+ |+ . ..|..++..+.+.|++++|.++|+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8899999988632355678888999999999999999999998764 43 3 478889998999999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHH-hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----C
Q 008276 390 KMLMSGLCP-DSIAFVSVLSA-CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM----P 463 (571)
Q Consensus 390 ~m~~~g~~p-~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 463 (571)
+..+. .| +...|...+.. +...|++++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++. +
T Consensus 381 ~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 381 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 99985 33 33344333222 335899999999999998753 446788999999999999999999999987 2
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276 464 MEPN--ERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500 (571)
Q Consensus 464 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 500 (571)
..|+ ...|...+......|+.+.+..+++++.+..|.
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 2332 448888888888999999999999999998874
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.5e-17 Score=158.33 Aligned_cols=262 Identities=9% Similarity=-0.058 Sum_probs=221.1
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 008276 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342 (571)
Q Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 342 (571)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34567788899999999999999999998764 4467888888999999999999999999999875 556788888999
Q ss_pred HHHhcCCHHHHHHHHhhCCC--C-ChhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 008276 343 MYAKCGSLTEARTVFDQMRC--Q-DVVSWTSM--------------IS-AYGMSGQGYDAVALFSKMLMSGLCPDSIAFV 404 (571)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 404 (571)
.+...|++++|...++.+.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 99999999999999988764 2 22223332 22 3777889999999999999852 33677899
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 008276 405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYS 482 (571)
Q Consensus 405 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 482 (571)
.+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...| +..+|..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999874 3456788999999999999999999999987 3344 6788999999999999
Q ss_pred CHHHHHHHHHHHHhhCCC------------CchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 483 NMDIGILAADHIFHLAPN------------QSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 483 ~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
++++|...++++.+..|. +..+|..++.++.+.|++++|..++++..
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999998 78899999999999999999999887543
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=1.2e-16 Score=148.68 Aligned_cols=246 Identities=11% Similarity=-0.028 Sum_probs=199.3
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCC-ChhHHHHHHHHH
Q 008276 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP-NLRLENALVDMY 344 (571)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 344 (571)
....+..+|...|+++.|+..++. .-+|+..++..+...+...++.+.|.+.++.+...+..| +...+..+..++
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~ 111 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIY 111 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 345567899999999999987754 235677888888889999999999999999998876434 556667777899
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHhhcCCCHHHHHH
Q 008276 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF---VSVLSACSHAGLLEEGRY 421 (571)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~l~~~~~~~~~~~~a~~ 421 (571)
...|++++|.+.++. ..+...+..++..+.+.|++++|.+.|+++.+. .|+.... ...+..+...|++++|..
T Consensus 112 ~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 112 FYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp HHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence 999999999999998 567788999999999999999999999999984 4664321 223344456689999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhC
Q 008276 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDI-GILAADHIFHLA 498 (571)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 498 (571)
+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++ ...| +..++..++..+...|+.++ +..+++++.+.+
T Consensus 188 ~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 188 IFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999885 4667889999999999999999999999997 4455 78889999999999999876 678999999999
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHH
Q 008276 499 PNQSGYYVLLSNIYAKAGRWGDVKRVR 525 (571)
Q Consensus 499 p~~~~~~~~l~~~~~~~g~~~~A~~~~ 525 (571)
|+++.+.. ...+.+.++++..-|
T Consensus 266 P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 266 RSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp TTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred CCChHHHH----HHHHHHHHHHHHHHc
Confidence 99886554 345666666665443
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.8e-16 Score=159.25 Aligned_cols=230 Identities=12% Similarity=-0.070 Sum_probs=124.7
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 008276 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF 357 (571)
Q Consensus 278 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (571)
+++++|.+++++..... +.+...+..+...+...|+++.|...++.+.+.. +.+..++..+..+|...+....+
T Consensus 227 ~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~---- 300 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMN---- 300 (472)
T ss_dssp ---CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhh----
Confidence 34455555555554432 2334444555555555555555555555555443 22333343333333211100000
Q ss_pred hhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH
Q 008276 358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436 (571)
Q Consensus 358 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 436 (571)
... ..........+.++.|...+++..+. .| +...+..+...+...|++++|...|++..+. ...+..
T Consensus 301 -~~~-------~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~ 369 (472)
T 4g1t_A 301 -LRE-------NGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVA 369 (472)
T ss_dssp -C-------------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHH
T ss_pred -HHH-------HHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChH
Confidence 000 00000011123467888888888774 34 3446778888999999999999999998864 222221
Q ss_pred --HHHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276 437 --EHFACLVD-LLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512 (571)
Q Consensus 437 --~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 512 (571)
..+..+.. .+...|+.++|+..|++. .+.|+...+.. ....+..++++.++.+|+++.+|..++.+|
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~ 440 (472)
T 4g1t_A 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQ 440 (472)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 12333333 234678999999999887 56665443322 234556778888999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 008276 513 AKAGRWGDVKRVRKFMNSKGI 533 (571)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~~~~ 533 (571)
...|++++|++.+++..+.+.
T Consensus 441 ~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 441 ELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHCC--------------
T ss_pred HHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999987663
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.2e-16 Score=151.49 Aligned_cols=280 Identities=11% Similarity=0.095 Sum_probs=106.4
Q ss_pred cCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHH
Q 008276 76 ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS 155 (571)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 155 (571)
+.|++++|.+.++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999665 48999999999999999999999653 5788999999999999999999998887
Q ss_pred HHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 008276 156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA 235 (571)
Q Consensus 156 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 235 (571)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7764 4567888999999999999999998886 377789999999999999999999999977 2566
Q ss_pred HHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCch
Q 008276 236 SLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315 (571)
Q Consensus 236 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 315 (571)
.+..++.+.++ .+.|.+.+.+.. ++.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|.+
T Consensus 153 ~LA~~L~~Lg~--yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 153 RLASTLVHLGE--YQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHTTTC--HHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcc--HHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCH
Confidence 66667777766 666766666663 5667777777777777777774443321 22222233566667777777
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--CCHHHHHHHHhhCCC--------CChhHHHHHHHHHHhcCChHHHH
Q 008276 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKC--GSLTEARTVFDQMRC--------QDVVSWTSMISAYGMSGQGYDAV 385 (571)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~ 385 (571)
+++..+++...... +-....|+-|.-+|++- +++.+..+.|..-.. .+...|..+...|.+.++++.|.
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 77777777666554 44455555555555442 334444444433221 23445666777777777777666
Q ss_pred HH
Q 008276 386 AL 387 (571)
Q Consensus 386 ~~ 387 (571)
..
T Consensus 303 ~t 304 (449)
T 1b89_A 303 IT 304 (449)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=3.9e-17 Score=158.33 Aligned_cols=299 Identities=15% Similarity=0.040 Sum_probs=198.9
Q ss_pred HhhcCCChHHHHH-HHHHHHHhCC-CC--chhHHHHHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCC
Q 008276 139 ACSGSNSLLVGLQ-IHCSVVKVGL-DY--NLFNGNGLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGR 211 (571)
Q Consensus 139 ~~~~~~~~~~a~~-~~~~~~~~g~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 211 (571)
++...|++++|.. .+++...... .| +...+..+...+...|++++|...|+++.+ .+..+|..+..++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5566788999988 7776554321 11 345678899999999999999999998764 366789999999999999
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHH
Q 008276 212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME 291 (571)
Q Consensus 212 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 291 (571)
+++|+..|+++.+.. |+ +..++..+...|...|++++|...++++.
T Consensus 114 ~~~A~~~~~~al~~~--~~--------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 114 ELLAISALRRCLELK--PD--------------------------------NQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp HHHHHHHHHHHHHHC--TT--------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CC--------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999987642 32 46789999999999999999999999999
Q ss_pred HCCCCCCH-HHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C---Ch
Q 008276 292 VHGIEPNA-ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q---DV 365 (571)
Q Consensus 292 ~~g~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~ 365 (571)
... |+. ..+..+ +.... ...+. ..+..+.. +...|++++|...|+.+.+ | +.
T Consensus 160 ~~~--~~~~~~~~~~-------~~~~~-----------~~~~~-~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~ 217 (368)
T 1fch_A 160 RYT--PAYAHLVTPA-------EEGAG-----------GAGLG-PSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDP 217 (368)
T ss_dssp HTS--TTTGGGCC----------------------------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred HhC--cCcHHHHHHH-------HHHhh-----------hhccc-HHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccH
Confidence 864 332 111111 00000 00000 01111222 2256677777777766653 3 35
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 008276 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445 (571)
Q Consensus 366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (571)
.++..+...+...|++++|+..|+++.+. .+.+...+..+...+...|++++|...++++.+. .+.+...+..+..+
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~ 294 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGIS 294 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 66777777777888888888888877773 1224567777777888888888888888887764 23456677778888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 446 LGRAGKVEEAYDLIKQM-PMEP------------NERIWGSLVAACCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 446 ~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (571)
|.+.|++++|...|+++ ...| ...+|..+..++...|++++|..++++.++
T Consensus 295 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 295 CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 88888888888888776 1111 257788888888888888888887775543
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=7.8e-17 Score=149.81 Aligned_cols=247 Identities=10% Similarity=0.021 Sum_probs=202.9
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 008276 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNA--ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348 (571)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (571)
++.....|++..|+..+++... ..|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4456778999999999887643 33443 3556678899999999999986654 23667788888999999999
Q ss_pred CHHHHHHHHhhCC----CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHH
Q 008276 349 SLTEARTVFDQMR----CQ-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423 (571)
Q Consensus 349 ~~~~a~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 423 (571)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 556777888999999999999999987 457778999999999999999999999
Q ss_pred HHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 008276 424 KIMTEQYKLVPRIEH---FACLVDLLGRAGKVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA 498 (571)
Q Consensus 424 ~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 498 (571)
+++.+. .|+... ...++..+...|++++|..+|+++ ..+.+...|+.+..++.+.|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999876 354321 123445555669999999999998 334478899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCHHH-HHHHHHHHHhCC
Q 008276 499 PNQSGYYVLLSNIYAKAGRWGD-VKRVRKFMNSKG 532 (571)
Q Consensus 499 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 532 (571)
|+++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999976 578999887654
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=1.1e-16 Score=155.03 Aligned_cols=232 Identities=11% Similarity=-0.004 Sum_probs=196.9
Q ss_pred CHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHH
Q 008276 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISA 374 (571)
Q Consensus 298 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 374 (571)
+...+..+...+.+.|++++|...|+.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+...|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34557788888999999999999999999876 56788899999999999999999999998864 457789999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 008276 375 YGMSGQGYDAVALFSKMLMSGLCPDSI-----------AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV 443 (571)
Q Consensus 375 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 443 (571)
|...|++++|+..|+++.+ ..|+.. .+..+...+...|++++|..+++++.+.....++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999988 344322 233457788999999999999999998633333688999999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHH
Q 008276 444 DLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521 (571)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 521 (571)
..|...|++++|.+.++++ ...| +..+|..+..++...|++++|+..++++++..|++..++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999988 3344 6889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 008276 522 KRVRKFMNSKG 532 (571)
Q Consensus 522 ~~~~~~m~~~~ 532 (571)
...++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999997643
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=3.4e-15 Score=149.96 Aligned_cols=384 Identities=9% Similarity=-0.077 Sum_probs=202.1
Q ss_pred CChhHHHHHHHHhhcCCChHHHHHHHcccC-----------CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhC----C
Q 008276 62 SNPSIGLKLMRTYGACGQMVDTRHVFDEIT-----------NK-NVVFFNVLIRSYVNNYLYYDALHVYKNMSVH----G 125 (571)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g 125 (571)
.....||.|...+...|++++|++.|++.. .+ ...+|+.+..+|...|++++|+..+++..+. .
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 345567777777777777777777775432 11 3346677777777777777777777665431 0
Q ss_pred --CCC-CcccHHHHHHHhh--cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH---HHhCCCHHHHHHHHccCCC---C
Q 008276 126 --FDP-DCYTYPCVLKACS--GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM---YGKCGCLKEARRVLNDMPS---K 194 (571)
Q Consensus 126 --~~p-~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~---~ 194 (571)
..+ ...++.....++. ..+++++|...|++.++.. +.+...+..+..+ +...++.++|++.+++..+ .
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 011 1122322222222 2345666666666665543 2233333333332 2233444445544443322 2
Q ss_pred CchhHHHHHHHHHhC----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHH
Q 008276 195 DVVTWNSMVAGYAQN----GRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVM 270 (571)
Q Consensus 195 ~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 270 (571)
+..++..+...+... |++++|.+.+++.... .+.+..++..+
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~----------------------------------~~~~~~~~~~l 253 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK----------------------------------APGVTDVLRSA 253 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHH----------------------------------CSSCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----------------------------------CccHHHHHHHH
Confidence 333344443333332 3344555555444331 23367889999
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 008276 271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350 (571)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (571)
...|...|++++|+..+++..+.. +-+..++..+..++...+.. ..... . ..........+..
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~---------~~~~~-~------~~~~~~~~~~~~~ 316 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQ---------VMNLR-E------NGMYGKRKLLELI 316 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHH
T ss_pred HHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHH---------hhhHH-H------HHHHHHHHHHhhH
Confidence 999999999999999999998753 33455665555544321110 00000 0 0001111112335
Q ss_pred HHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HhhcCCCHHHHHHHHH
Q 008276 351 TEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI--AFVSVLS-ACSHAGLLEEGRYYFK 424 (571)
Q Consensus 351 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~ 424 (571)
+.|...++...+ .+...+..+...+...|++++|+..|++..+....|... .+..+.. .....|++++|+..|+
T Consensus 317 ~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ 396 (472)
T 4g1t_A 317 GHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI 396 (472)
T ss_dssp HHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 667777766543 355678889999999999999999999999854333221 2223322 2346799999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 008276 425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS 502 (571)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 502 (571)
+..+. .|+....... .+.+.+++++. ...| +..+|..+...+...|++++|++.|+++++.+|.+|
T Consensus 397 kal~i---~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 397 EGVKI---NQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHS---CCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHhc---CcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 98863 4554322222 22333444433 2234 677899999999999999999999999999998888
Q ss_pred hhHHHHH
Q 008276 503 GYYVLLS 509 (571)
Q Consensus 503 ~~~~~l~ 509 (571)
.++.-++
T Consensus 465 ~a~~~~G 471 (472)
T 4g1t_A 465 SASSWNG 471 (472)
T ss_dssp -------
T ss_pred cHhhcCC
Confidence 7766553
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=2.4e-16 Score=149.93 Aligned_cols=271 Identities=13% Similarity=0.049 Sum_probs=136.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC
Q 008276 167 NGNGLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN 243 (571)
Q Consensus 167 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 243 (571)
.+..+...+...|++++|..+|+++.+ .+..++..+...+...|++++|...++++.+. .|+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~------------- 87 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPK------------- 87 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcC-------------
Confidence 344455555666666666666655542 24445555555666666666666666555442 111
Q ss_pred CCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHH
Q 008276 244 TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR 323 (571)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 323 (571)
+...+..+...|...|++++|...++++.+.. +.+...+..+...+
T Consensus 88 -------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~-------------- 133 (327)
T 3cv0_A 88 -------------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD-------------- 133 (327)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC----------------------
T ss_pred -------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH--------------
Confidence 23445556666666666666666666655532 11111111110000
Q ss_pred HHHHcCCCCChhHHHHH-HH-HHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 008276 324 YVERKKLQPNLRLENAL-VD-MYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP 398 (571)
Q Consensus 324 ~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 398 (571)
|+......+ .. .+...|++++|...++.+.+ .+...+..+...+...|++++|...++++.+.. +.
T Consensus 134 --------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~ 204 (327)
T 3cv0_A 134 --------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PD 204 (327)
T ss_dssp --------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred --------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC
Confidence 000000000 11 13444455555555554432 234455555556666666666666666655531 22
Q ss_pred CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----------
Q 008276 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP----------- 466 (571)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----------- 466 (571)
+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...|
T Consensus 205 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 282 (327)
T 3cv0_A 205 DAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASR 282 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchh
Confidence 3445556666666666666666666666543 1234455566666666666666666666655 1122
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 008276 467 --NERIWGSLVAACCLYSNMDIGILAADHIFHL 497 (571)
Q Consensus 467 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 497 (571)
+...|..+..++...|++++|...++++++.
T Consensus 283 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 283 EATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred hcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 2445666666666666666666666655443
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.2e-15 Score=135.97 Aligned_cols=228 Identities=10% Similarity=-0.022 Sum_probs=141.5
Q ss_pred hhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCC--CChhHHHHHH
Q 008276 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ--PNLRLENALV 341 (571)
Q Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 341 (571)
...|..+...+...|++++|+.+|+++.+.. .+...+..+..++...|++++|...++.+.+.... ++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------ 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------ 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH------
Confidence 3456666677777777777777777766654 55566666666666666666666666665543210 0100
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHH
Q 008276 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421 (571)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 421 (571)
.....|..+...+...|++++|...|+++.+ ..|+.. .+...|++++|..
T Consensus 77 ---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 77 ---------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELK 126 (258)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHH
Confidence 0024455566666666666666666666666 334432 2334456667777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 008276 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499 (571)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 499 (571)
.++.+... .+.+...+..+...+...|++++|...++++ ...| +..+|..+...+...|++++|+..++++++..|
T Consensus 127 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 127 KAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 77666552 2233455666667777777777777777666 2233 566677777777777777777777777777777
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 500 NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 500 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
+++.++..++.+|...|++++|...+++..+.
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77777777777777777777777777766543
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=2.1e-15 Score=133.91 Aligned_cols=195 Identities=15% Similarity=0.052 Sum_probs=155.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 008276 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSV 406 (571)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l 406 (571)
+++...+..+...+...|++++|...|+...+ .+...+..+...+.+.|++++|+..|++..+ ..| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 45667777888888899999999999988764 3567888889999999999999999999988 445 45578888
Q ss_pred HHHhhcC-----------CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 008276 407 LSACSHA-----------GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSL 474 (571)
Q Consensus 407 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 474 (571)
...+... |++++|...+++..+. .+.+...+..+..++...|++++|+..|+++ ....+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 9999999999999874 2445678889999999999999999999987 222788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
..++...|++++|+..|+++++.+|+++.++..++.++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998654
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.2e-15 Score=136.77 Aligned_cols=234 Identities=10% Similarity=-0.051 Sum_probs=169.7
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHhhCCC--CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCC--CCC----HHHHH
Q 008276 232 DTMASLLPSVTNTSPENVLSVKEMFLKLDN--KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI--EPN----AISVA 303 (571)
Q Consensus 232 ~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~ 303 (571)
..+..+-..+...++ .+.|...+++... .+...+..+..+|...|++++|+..+++..+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQ--FDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--HHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 455566666777777 7788777765432 6788999999999999999999999999876421 112 46666
Q ss_pred HHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 008276 304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD 383 (571)
Q Consensus 304 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 383 (571)
.+...+...|++++|...++.+.+.. |+. ..+...|++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~--------------------------------------~~~~~~~~~~~ 123 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA--------------------------------------DILTKLRNAEK 123 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH--------------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh--------------------------------------HHHHHHhHHHH
Confidence 77777777777777777777777653 221 23445566777
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276 384 AVALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 384 a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
|...++++... .|+ ...+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|...++++
T Consensus 124 a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 124 ELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 77777777763 343 346777777777888888888888887764 2345677778888888888888888888877
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHHH
Q 008276 463 -PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLA------PNQSGYYVLLSNI 511 (571)
Q Consensus 463 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 511 (571)
...| +...|..+...+...|++++|...++++.+.. |.+..++..+..+
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 3334 57778888888889999999999999998888 7777776666543
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=6.2e-17 Score=165.67 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=125.1
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHcccC-------CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHH
Q 008276 63 NPSIGLKLMRTYGACGQMVDTRHVFDEIT-------NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC 135 (571)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 135 (571)
-..+||+||.+|++.|++++|.++|+.|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999997753 58999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC-----CCchhHHHHHHHHHhC
Q 008276 136 VLKACSGSNSL-LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS-----KDVVTWNSMVAGYAQN 209 (571)
Q Consensus 136 li~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~ 209 (571)
+|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+.. +.+.+...|...|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 78999999999999999999999999877776655555555444432 1234455566666665
Q ss_pred C
Q 008276 210 G 210 (571)
Q Consensus 210 g 210 (571)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 5
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=9.2e-15 Score=135.17 Aligned_cols=241 Identities=10% Similarity=-0.114 Sum_probs=192.8
Q ss_pred HcCCchHHHHHHHHHHHCCCC---CCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 008276 276 NNSMPAEAVDLYLQMEVHGIE---PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352 (571)
Q Consensus 276 ~~g~~~~A~~~~~~m~~~g~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (571)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457899999999999876321 135677888888999999999999999999875 4567888899999999999999
Q ss_pred HHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008276 353 ARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429 (571)
Q Consensus 353 a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 429 (571)
|...|+.+.+ .+...+..+...+...|++++|...|+++.+ ..|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998874 4677899999999999999999999999998 4566555555555667779999999999888774
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 008276 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503 (571)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 503 (571)
.+++...+ .++..+...++.++|.+.+++. ...|+ ...|..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23444444 3677778888899999999887 33332 577888999999999999999999999999997755
Q ss_pred hHHHHHHHHHhcCCHHHHHHHH
Q 008276 504 YYVLLSNIYAKAGRWGDVKRVR 525 (571)
Q Consensus 504 ~~~~l~~~~~~~g~~~~A~~~~ 525 (571)
.+ ..++...|++++|++.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 56788899999998876
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=1.8e-14 Score=133.08 Aligned_cols=248 Identities=11% Similarity=-0.072 Sum_probs=190.8
Q ss_pred hhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCC--hhHHHHHH
Q 008276 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN--LRLENALV 341 (571)
Q Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 341 (571)
...+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+....++ ...+..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3456677888999999999999999998864 33445777888899999999999999999988432222 23477888
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHH
Q 008276 342 DMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLE 417 (571)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~ 417 (571)
..+...|++++|...|+...+ .+...|..+...|...|++++|+..|++..+. .| +...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998764 45678999999999999999999999998885 44 4556777763444556999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhcCCH
Q 008276 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK---VEEAYDLIKQM----PMEPN------ERIWGSLVAACCLYSNM 484 (571)
Q Consensus 418 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~g~~ 484 (571)
+|...|+++.+. .+.+...+..+..++...|+ +++|...++++ ...|+ ..+|..+...|...|++
T Consensus 160 ~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 160 KADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 999999999875 23446777788888888887 77777777766 22243 25677788889999999
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276 485 DIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516 (571)
Q Consensus 485 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 516 (571)
++|...++++++++|+++.++..+.......+
T Consensus 238 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 238 VKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999999988888877665544
No 41
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=5.6e-16 Score=158.73 Aligned_cols=127 Identities=13% Similarity=0.106 Sum_probs=106.6
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 008276 331 QPNLRLENALVDMYAKCGSLTEARTVFDQMR-------CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403 (571)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 403 (571)
..-..+|++||++|++.|++++|.++|++|. .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345688999999999999999999987653 489999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008276 404 VSVLSACSHAGL-LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458 (571)
Q Consensus 404 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (571)
+++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.+-++...++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999999887 47889999999888 9999999999888776665444444333
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=1.4e-13 Score=136.57 Aligned_cols=378 Identities=8% Similarity=-0.040 Sum_probs=219.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 008276 101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL---LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK 177 (571)
Q Consensus 101 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 177 (571)
+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|..+++...+. +...+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4556667777777777777776654 333333444444555555 6676666666543 44444555554444
Q ss_pred CC-----CHHHHHHHHccCCCC-CchhHHHHHHHHHhCCCchHH---HHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCcc
Q 008276 178 CG-----CLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEA---LDVCREMESLRIKPDADTMASLLPSVTNTSPEN 248 (571)
Q Consensus 178 ~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a---~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 248 (571)
.| ++++|...|++..++ +...+..|...|...+..+++ .+.+......
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~----------------------- 138 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA----------------------- 138 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-----------------------
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-----------------------
Confidence 43 556666666655432 334555555555554443332 2222222221
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC---chHHHHHHHHHH
Q 008276 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS---ALLLGRKIHRYV 325 (571)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~ 325 (571)
.+...+..|...|...+.++++.+....+.+.-...+...+..+...|...| +.++|...|+..
T Consensus 139 -------------g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 139 -------------GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp -------------TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 2345566666777777755555444333322111222226666666666677 778888888887
Q ss_pred HHcCCCCChhHHHHHHHHHHhc----CCHHHHHHHHhhCCCCChhHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCC
Q 008276 326 ERKKLQPNLRLENALVDMYAKC----GSLTEARTVFDQMRCQDVVSWTSMISA-Y--GMSGQGYDAVALFSKMLMSGLCP 398 (571)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p 398 (571)
.+.| .++...+..+...|... +++++|...|+.....+...+..|... + ...+++++|+.+|++..+.|
T Consensus 206 a~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--- 281 (452)
T 3e4b_A 206 VSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--- 281 (452)
T ss_dssp HHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---
T ss_pred HHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---
Confidence 7776 44555445566666544 688888888887773356667777766 4 46789999999999988876
Q ss_pred CHHHHHHHHHHhhcCC-----CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHH
Q 008276 399 DSIAFVSVLSACSHAG-----LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR----AGKVEEAYDLIKQMPMEPNER 469 (571)
Q Consensus 399 ~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~ 469 (571)
+...+..+...|. .| ++++|...|++.. +.++..+..|...|.. ..++++|...|++.-...+..
T Consensus 282 ~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~ 355 (452)
T 3e4b_A 282 QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS 355 (452)
T ss_dssp CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT
T ss_pred CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH
Confidence 5666666776665 44 8999999998875 3466777778877766 348999999998872233445
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 470 IWGSLVAACCL----YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 470 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
....|...|.. ..|.++|...|+++.+.+++........+......++.++|..+.++....
T Consensus 356 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 356 ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 55666666653 458999999999999887644333333333233445777788887776543
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=2.1e-13 Score=135.32 Aligned_cols=343 Identities=13% Similarity=0.028 Sum_probs=221.0
Q ss_pred hHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCCh---HHHHHHHcccCCCChhhHHHHHHHHHHc
Q 008276 32 DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQM---VDTRHVFDEITNKNVVFFNVLIRSYVNN 108 (571)
Q Consensus 32 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~ 108 (571)
..++..+.+.|++++|.++|.+.. +.| ++..+..|...|...|+. ++|.+.|+...+.++..+..+...+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa-~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLA-ELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHT---CCTGGGTCC----------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 347888889999999999999998 776 345566777778888888 8999999988777778888888866666
Q ss_pred C-----ChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC-
Q 008276 109 Y-----LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLL---VGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG- 179 (571)
Q Consensus 109 ~-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g- 179 (571)
+ ++++|+..|++..+.| +...+..|...|...+..+ .+.+.+......| +...+..|...|...+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 5 7889999999999876 3336666777766555433 3455555555554 4556677788888877
Q ss_pred ---CHHHHHHHHccCCCCCchhHHHHHHHHHhCC---CchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHH
Q 008276 180 ---CLKEARRVLNDMPSKDVVTWNSMVAGYAQNG---RFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK 253 (571)
Q Consensus 180 ---~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~ 253 (571)
..+.+..+++.....+...+..+...|...| +.++|++.|++..+.|... .
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~-a---------------------- 213 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT-A---------------------- 213 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-H----------------------
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-H----------------------
Confidence 4555666677766667779999999999999 8999999999988876322 1
Q ss_pred HHHhhCCCCChhhHHHHHHHHHHc----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHH-h--ccCCchHHHHHHHHHHH
Q 008276 254 EMFLKLDNKNLVSWNVMIAVYANN----SMPAEAVDLYLQMEVHGIEPNAISVASVLPA-C--GDLSALLLGRKIHRYVE 326 (571)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~ 326 (571)
..+..|...|... +++++|+.+|++.. .| +...+..+... + ...+++++|...|+...
T Consensus 214 -----------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 214 -----------QRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp -----------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 2223344444333 67888999888876 33 33444444444 2 45788899999988888
Q ss_pred HcCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCC
Q 008276 327 RKKLQPNLRLENALVDMYAKCG-----SLTEARTVFDQMRCQDVVSWTSMISAYGM----SGQGYDAVALFSKMLMSGLC 397 (571)
Q Consensus 327 ~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~ 397 (571)
+.| +...+..|...|. .| ++++|...|+.....+...+..|...|.. ..++++|..+|++..+.|.
T Consensus 279 ~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~- 353 (452)
T 3e4b_A 279 AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ- 353 (452)
T ss_dssp HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-
T ss_pred HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-
Confidence 776 4556666666666 44 88888888888774456667777776665 3488888888888877653
Q ss_pred CCHHHHHHHHHHhhc----CCCHHHHHHHHHHHHHh
Q 008276 398 PDSIAFVSVLSACSH----AGLLEEGRYYFKIMTEQ 429 (571)
Q Consensus 398 p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 429 (571)
......|...|.. ..+.++|..+|+...+.
T Consensus 354 --~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 354 --NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp --TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 2233444444443 45778888888777654
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=6.5e-14 Score=134.52 Aligned_cols=246 Identities=9% Similarity=0.012 Sum_probs=202.8
Q ss_pred hhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc-hHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 008276 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA-LLLGRKIHRYVERKKLQPNLRLENALVD 342 (571)
Q Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 342 (571)
..+|..+...+.+.|++++|+..++++++.. +-+...|..+..++...|+ +++|...++.+++.+ +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4578888899999999999999999998854 3456788888888999996 999999999999986 557788888999
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhc-CCCHH
Q 008276 343 MYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSH-AGLLE 417 (571)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~-~~~~~ 417 (571)
++...|++++|...|+++.+ .+...|..+..++...|++++|+..|+++++. .| +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999998874 46778999999999999999999999999994 45 56688888888888 56657
Q ss_pred HH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 008276 418 EG-----RYYFKIMTEQYKLVPRIEHFACLVDLLGRAG--KVEEAYDLIKQMPMEP-NERIWGSLVAACCLYS------- 482 (571)
Q Consensus 418 ~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g------- 482 (571)
+| +..+++..+. .+.+...|..+..++...| ++++|.+.+.++...| +...+..++..|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 77 4788888764 2445678888888888888 6889998888874455 5677888888888764
Q ss_pred -C-HHHHHHHHHHH-HhhCCCCchhHHHHHHHHHhc
Q 008276 483 -N-MDIGILAADHI-FHLAPNQSGYYVLLSNIYAKA 515 (571)
Q Consensus 483 -~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 515 (571)
+ .++|+.+++++ .+++|.....|..++..+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899999999999888776543
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=4.4e-13 Score=122.06 Aligned_cols=138 Identities=12% Similarity=0.004 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444 (571)
Q Consensus 366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (571)
..+..+...+...|++++|.++++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..++.
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 183 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMAD 183 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHH
Confidence 3444455555555566666666655555223332 335555555666666666666666666553 1233455556666
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 008276 445 LLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505 (571)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 505 (571)
.+...|++++|...++++ ...| +...+..+...+...|++++|...++++.+..|+++...
T Consensus 184 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 184 LLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 666666666666666655 2233 445555555666666666666666666666666655443
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=4.9e-14 Score=127.56 Aligned_cols=144 Identities=13% Similarity=0.081 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444 (571)
Q Consensus 365 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (571)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+..
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 167 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGM 167 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 3445555555556666666666666665531 224445555666666666666666666666553 2234455566666
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 008276 445 LLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511 (571)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 511 (571)
.+...|++++|.+.++++ ...| +..++..+...+...|++++|...++++.+..|+++.++..+...
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 666666666666666655 2222 455666666666666666666666666666666666666555443
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=3.2e-13 Score=120.47 Aligned_cols=196 Identities=11% Similarity=0.008 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 008276 334 LRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410 (571)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 410 (571)
...+..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34455556666666666666666665542 345566667777777777777777777776631 22455666777777
Q ss_pred hcC-CCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 008276 411 SHA-GLLEEGRYYFKIMTEQYKLVPR-IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDI 486 (571)
Q Consensus 411 ~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 486 (571)
... |++++|...++++.+. +..|+ ...+..+..++...|++++|.+.++++ ...| +...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 777 7777777777777652 23333 456667777777777777777777766 3333 46677777777777788888
Q ss_pred HHHHHHHHHhhCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 487 GILAADHIFHLAP-NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 487 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
|...++++.+..| .+...+..++..+...|+.++|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888887777777 77777777777777778888777777777644
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=1.1e-12 Score=121.01 Aligned_cols=224 Identities=11% Similarity=-0.072 Sum_probs=136.5
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc----CCchHHHHHHHHHHHHcCCCCChhHHH
Q 008276 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD----LSALLLGRKIHRYVERKKLQPNLRLEN 338 (571)
Q Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (571)
+..++..+...|...|++++|+.+|++..+. -+...+..+...+.. .+++++|...|+...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667778888888888889998888888773 344566666666776 778888888888777664 455566
Q ss_pred HHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276 339 ALVDMYAK----CGSLTEARTVFDQMRC-QDVVSWTSMISAYGM----SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409 (571)
Q Consensus 339 ~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 409 (571)
.+...|.. .+++++|...|+...+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666666 6666666666665543 344555566666666 666666666666666543 34444455555
Q ss_pred hhc----CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 008276 410 CSH----AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR----AGKVEEAYDLIKQM-PMEPNERIWGSLVAACCL 480 (571)
Q Consensus 410 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~ 480 (571)
+.. .+++++|...|++..+. .+...+..+...|.. .+++++|.+.+++. ... +...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHc
Confidence 554 56666666666665543 133445555555555 55555555555554 212 24444455555555
Q ss_pred ----cCCHHHHHHHHHHHHhhCCC
Q 008276 481 ----YSNMDIGILAADHIFHLAPN 500 (571)
Q Consensus 481 ----~g~~~~A~~~~~~~~~~~p~ 500 (571)
.+++++|+..++++.+.+|+
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCH
Confidence 55555555555555555553
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=1.9e-13 Score=117.79 Aligned_cols=165 Identities=13% Similarity=0.081 Sum_probs=145.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 008276 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL 442 (571)
Q Consensus 364 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 442 (571)
+...|..+...|...|++++|++.|++.++ +.| +...+..+..++...|++++|...++..... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 566788999999999999999999999998 455 5568888999999999999999999998874 34456777888
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHH
Q 008276 443 VDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD 520 (571)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 520 (571)
...+...++++.|.+.+.+. ...| +...+..+...+...|++++|+..|+++++.+|.++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88999999999999999887 4444 678888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 008276 521 VKRVRKFMNSKG 532 (571)
Q Consensus 521 A~~~~~~m~~~~ 532 (571)
|++.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999987654
No 50
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=1.2e-13 Score=122.56 Aligned_cols=206 Identities=12% Similarity=-0.007 Sum_probs=116.7
Q ss_pred CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 008276 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV 341 (571)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (571)
++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 356677778888888888888888888887653 3456677777777777888888888887777765 34455566666
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHH
Q 008276 342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGR 420 (571)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~ 420 (571)
.++...+. . ... .+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|.
T Consensus 81 ~~~~~~~~---------~--~~~---------~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 81 EAYVALYR---------Q--AED---------RERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp HHHHHHHH---------T--CSS---------HHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhhh---------h--hhh---------hcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHH
Confidence 66555400 0 000 01112566666666666655 3332 345555556666666666666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHI 494 (571)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (571)
..|+++.+. . .+...+..+..+|...|++++|...|+++ ...| +...+..+...+...|++++|+..+++.
T Consensus 139 ~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 139 ASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666554 2 45555566666666666666666666655 3333 4555556666666666666666666554
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=2.3e-13 Score=123.96 Aligned_cols=197 Identities=10% Similarity=-0.049 Sum_probs=166.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 008276 334 LRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410 (571)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 410 (571)
...+..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34556666777777777777777776653 356678888889999999999999999998852 33667888899999
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 008276 411 SHAGLLEEGRYYFKIMTEQYKLVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIG 487 (571)
Q Consensus 411 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 487 (571)
...|++++|..+++++.+. +..| +...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999862 3445 4577888999999999999999999987 3344 678899999999999999999
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 488 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
...++++.+..|++...+..++.++...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998764
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=1.3e-12 Score=120.52 Aligned_cols=224 Identities=10% Similarity=-0.051 Sum_probs=194.8
Q ss_pred CHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHH
Q 008276 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK----CGSLTEARTVFDQMRC-QDVVSWTSMI 372 (571)
Q Consensus 298 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li 372 (571)
+..++..+...+...|++++|...|+...+. .+...+..+...|.. .+++++|...|++..+ .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4567777888888999999999999999983 345677788889999 9999999999998765 4778899999
Q ss_pred HHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276 373 SAYGM----SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH----AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444 (571)
Q Consensus 373 ~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (571)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999965 67788888888988 99999999999999875 3 5677788889
Q ss_pred HHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh--
Q 008276 445 LLGR----AGKVEEAYDLIKQMPMEPNERIWGSLVAACCL----YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK-- 514 (571)
Q Consensus 445 ~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 514 (571)
.|.. .+++++|.+.|++.-...+...+..+...+.. .+++++|+..++++.+.+| +..+..++.+|.+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9988 99999999999987212356788888999999 9999999999999999876 7789999999999
Q ss_pred --cCCHHHHHHHHHHHHhCCC
Q 008276 515 --AGRWGDVKRVRKFMNSKGI 533 (571)
Q Consensus 515 --~g~~~~A~~~~~~m~~~~~ 533 (571)
.|++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999987763
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=9.1e-14 Score=125.79 Aligned_cols=197 Identities=10% Similarity=0.059 Sum_probs=155.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276 333 NLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409 (571)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 409 (571)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344556666777778888888888777653 356778888889999999999999999998852 3366788889999
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 008276 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIG 487 (571)
Q Consensus 410 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 487 (571)
+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999875 3456788889999999999999999999987 3334 678899999999999999999
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 488 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
+..++++.+..|.+..++..++.+|...|++++|...++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999998754
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=1.1e-13 Score=132.92 Aligned_cols=228 Identities=10% Similarity=0.021 Sum_probs=195.1
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-HHHHHHHHhhCCC---CChhHHHHHHHH
Q 008276 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS-LTEARTVFDQMRC---QDVVSWTSMISA 374 (571)
Q Consensus 299 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~li~~ 374 (571)
...|..+...+...|++++|...++.+++.. +.+...|+.+..++...|+ +++|+..|+++.+ .+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3566777778888999999999999999986 5677888999999999997 9999999999874 467789999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCH
Q 008276 375 YGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR-AGKV 452 (571)
Q Consensus 375 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 452 (571)
+...|++++|+..|+++++ +.| +...|..+..++...|++++|+..++++.+. .+.+...|+.+..++.+ .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999 455 5668999999999999999999999999985 34567889999999999 6665
Q ss_pred HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC-------
Q 008276 453 EEA-----YDLIKQM-PMEP-NERIWGSLVAACCLYS--NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG------- 516 (571)
Q Consensus 453 ~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 516 (571)
++| ++.+++. .+.| +...|..+...+...| ++++|+..++++ +.+|+++.++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4777766 5566 6788999999998888 699999999998 888999999999999999874
Q ss_pred --CHHHHHHHHHHH-HhCC
Q 008276 517 --RWGDVKRVRKFM-NSKG 532 (571)
Q Consensus 517 --~~~~A~~~~~~m-~~~~ 532 (571)
.+++|+.+++++ .+.+
T Consensus 331 ~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 358999999998 5543
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=2.1e-13 Score=133.82 Aligned_cols=267 Identities=13% Similarity=0.022 Sum_probs=205.0
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHhccCCchHHHHHHHHHHHHc----CCCC-C
Q 008276 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN----AISVASVLPACGDLSALLLGRKIHRYVERK----KLQP-N 333 (571)
Q Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 333 (571)
....+......+...|++++|...|+++.+.+ +.+ ...+..+...+...|+++.|...++.+.+. +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44566777888999999999999999988763 223 356777888889999999999999887643 2122 2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHH
Q 008276 334 LRLENALVDMYAKCGSLTEARTVFDQMRC-----QD----VVSWTSMISAYGMSGQ--------------------GYDA 384 (571)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a 384 (571)
..++..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45677788889999999999999887763 22 3478888889999999 9999
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 008276 385 VALFSKMLMS----GLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEA 455 (571)
Q Consensus 385 ~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 455 (571)
...+++..+. +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9998886542 11222 236778888899999999999999988754222233 24678889999999999999
Q ss_pred HHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHhcCCHHHH
Q 008276 456 YDLIKQM-P---MEPN----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ------SGYYVLLSNIYAKAGRWGDV 521 (571)
Q Consensus 456 ~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A 521 (571)
...+++. . ..++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999876 1 1112 4577788888999999999999999998865332 55788999999999999999
Q ss_pred HHHHHHHHh
Q 008276 522 KRVRKFMNS 530 (571)
Q Consensus 522 ~~~~~~m~~ 530 (571)
.+++++..+
T Consensus 327 ~~~~~~al~ 335 (406)
T 3sf4_A 327 MHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888653
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=9.4e-13 Score=117.41 Aligned_cols=208 Identities=13% Similarity=-0.022 Sum_probs=144.0
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 008276 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342 (571)
Q Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 342 (571)
+...+..+...+...|++++|..+++++.+.. +.+... +..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-----------------------------------~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELA-----------------------------------WLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH-----------------------------------HHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHH-----------------------------------HHHHHH
Confidence 34455555666666666666666666555432 223334 444444
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHH
Q 008276 343 MYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMS-GQGYDAVALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLE 417 (571)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~ 417 (571)
.|...|++++|...++.+.+ .+...+..+...+... |++++|...++++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 45555555555555544432 2445666777777888 888888888888877333444 457777888888889999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PME--PNERIWGSLVAACCLYSNMDIGILAADHI 494 (571)
Q Consensus 418 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (571)
+|...++++.+. .+.+...+..++..+...|++++|.+.++++ ... .+...+..+...+...|+.+.|...++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999888764 2345677888888999999999999998887 222 45667777777788899999999999999
Q ss_pred HhhCCCCchhHHHH
Q 008276 495 FHLAPNQSGYYVLL 508 (571)
Q Consensus 495 ~~~~p~~~~~~~~l 508 (571)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999888776554
No 57
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=2.2e-13 Score=125.60 Aligned_cols=228 Identities=8% Similarity=-0.060 Sum_probs=187.4
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh----hHHHHHHHH
Q 008276 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QDV----VSWTSMISA 374 (571)
Q Consensus 301 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~ 374 (571)
.+......+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...++...+ ++. ..|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34456677889999999999999999875 44566788888999999999999999988764 222 348899999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008276 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454 (571)
Q Consensus 375 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (571)
+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999842 235568999999999999999999999999863 34456777778734445569999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhC---CCC-----chhHHHHHHHHHhcCCHHHH
Q 008276 455 AYDLIKQM-PMEP-NERIWGSLVAACCLYSN---MDIGILAADHIFHLA---PNQ-----SGYYVLLSNIYAKAGRWGDV 521 (571)
Q Consensus 455 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A 521 (571)
|.+.|+++ ...| +...+..+...+...|+ +++|...++++.+.. |+. ..+|..++.+|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999988 4455 47788888888888888 888999999999875 432 25888999999999999999
Q ss_pred HHHHHHHHhCC
Q 008276 522 KRVRKFMNSKG 532 (571)
Q Consensus 522 ~~~~~~m~~~~ 532 (571)
.+++++..+..
T Consensus 241 ~~~~~~al~~~ 251 (272)
T 3u4t_A 241 DAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999998765
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=5.5e-14 Score=138.31 Aligned_cols=266 Identities=12% Similarity=-0.006 Sum_probs=208.5
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHhccCCchHHHHHHHHHHHHc----C-CCCChh
Q 008276 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA----ISVASVLPACGDLSALLLGRKIHRYVERK----K-LQPNLR 335 (571)
Q Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 335 (571)
..+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...++.+.+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345567788999999999999999998864 2232 46778888899999999999999988753 1 123346
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC-----C----ChhHHHHHHHHHHhcCC-----------------hHHHHHHHH
Q 008276 336 LENALVDMYAKCGSLTEARTVFDQMRC-----Q----DVVSWTSMISAYGMSGQ-----------------GYDAVALFS 389 (571)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~~~-----------------~~~a~~~~~ 389 (571)
.+..+...|...|++++|...+++..+ . ...++..+...|...|+ +++|++.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 677888999999999999999988753 1 23468888899999999 999999998
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008276 390 KMLMS----GLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDLIK 460 (571)
Q Consensus 390 ~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (571)
+..+. +..+. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 87652 11122 237788888999999999999999988764221222 2377889999999999999999998
Q ss_pred hC-CC---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHhcCCHHHHHHHHH
Q 008276 461 QM-PM---EP----NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ------SGYYVLLSNIYAKAGRWGDVKRVRK 526 (571)
Q Consensus 461 ~~-~~---~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 526 (571)
+. .. .. ...++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|..+++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 76 11 11 24677888889999999999999999998865322 4488899999999999999999999
Q ss_pred HHHhC
Q 008276 527 FMNSK 531 (571)
Q Consensus 527 ~m~~~ 531 (571)
+..+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98744
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=3.1e-13 Score=128.72 Aligned_cols=265 Identities=14% Similarity=0.021 Sum_probs=206.6
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHhccCCchHHHHHHHHHHHHc----CCC-CChhH
Q 008276 266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN----AISVASVLPACGDLSALLLGRKIHRYVERK----KLQ-PNLRL 336 (571)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 336 (571)
.+......+...|++++|..+|+++.+.. +.+ ...+..+...+...|+++.|...++...+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 45556778899999999999999998863 223 356778888899999999999999887643 212 22456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHHHHH
Q 008276 337 ENALVDMYAKCGSLTEARTVFDQMRC-----QD----VVSWTSMISAYGMSGQ--------------------GYDAVAL 387 (571)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a~~~ 387 (571)
+..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77888899999999999999988653 22 3378888899999999 9999999
Q ss_pred HHHHHHC----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 008276 388 FSKMLMS----GLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDL 458 (571)
Q Consensus 388 ~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 458 (571)
+++.... +..|. ...+..+...+...|++++|...+++..+.....++ ...+..+...+...|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9887542 11222 236778888899999999999999988654221222 24778889999999999999999
Q ss_pred HHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHhcCCHHHHHHH
Q 008276 459 IKQM-P---MEPN----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ------SGYYVLLSNIYAKAGRWGDVKRV 524 (571)
Q Consensus 459 ~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~ 524 (571)
+++. . ..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|..+
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9876 1 1112 5577788889999999999999999998865322 44788999999999999999999
Q ss_pred HHHHHhC
Q 008276 525 RKFMNSK 531 (571)
Q Consensus 525 ~~~m~~~ 531 (571)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9998764
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.54 E-value=8.8e-14 Score=138.87 Aligned_cols=207 Identities=11% Similarity=-0.001 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 008276 316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL-TEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKM 391 (571)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 391 (571)
+.+...++...... +.+...+..+..+|...|++ ++|...|++..+ .+...|..+...|...|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444433322 33555666666666667777 777777766543 34667888888899999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhhcC---------CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------CCHHH
Q 008276 392 LMSGLCPDSIAFVSVLSACSHA---------GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA--------GKVEE 454 (571)
Q Consensus 392 ~~~g~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 454 (571)
.+ ..|+...+..+...+... |++++|...++++.+. .+.+...|..+..+|... |++++
T Consensus 164 l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 98 567778888899999998 9999999999999874 344578888999999988 99999
Q ss_pred HHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276 455 AYDLIKQM-PMEP----NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527 (571)
Q Consensus 455 A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 527 (571)
|++.|++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999988 4455 7889999999999999999999999999999999999999999999999999999975543
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=3.6e-13 Score=124.40 Aligned_cols=245 Identities=8% Similarity=-0.137 Sum_probs=188.8
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHH
Q 008276 208 QNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287 (571)
Q Consensus 208 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 287 (571)
..|++++|+..|+++.+.....+.. +...+..+...+...|++++|...|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~ 66 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDE------------------------------RAQLLYERGVLYDSLGLRALARNDF 66 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHH------------------------------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCch------------------------------hHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4577888888888887653211111 2466888899999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh
Q 008276 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QDV 365 (571)
Q Consensus 288 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~ 365 (571)
+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...|+.+.+ |+.
T Consensus 67 ~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 67 SQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp HHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 9998864 4467889999999999999999999999999875 45678888999999999999999999998874 555
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC-----HHHHH
Q 008276 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR-----IEHFA 440 (571)
Q Consensus 366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 440 (571)
......+..+...|++++|...+++.... .+++...+. ++..+...++.++|...++...+. .|+ ...+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~ 219 (275)
T 1xnf_A 145 PFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGWN-IVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNF 219 (275)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHH
Confidence 45555555667789999999999888775 334444444 667778888889999999887642 232 47788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008276 441 CLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAA 491 (571)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 491 (571)
.+...|.+.|++++|...|+++ ...|+. +.....++...|++++|+..+
T Consensus 220 ~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 220 YLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 8999999999999999999988 556633 233355677888888888776
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.52 E-value=5.9e-11 Score=121.66 Aligned_cols=441 Identities=10% Similarity=0.036 Sum_probs=284.3
Q ss_pred ChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC--C-ChhhHHHHHHHHHHcCC---hhHHHH
Q 008276 43 DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--K-NVVFFNVLIRSYVNNYL---YYDALH 116 (571)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~---~~~A~~ 116 (571)
...+....+++.+ ... +-|...|..++..+.+.+.++.+..+|+.+.. | ....|..-+..-.+.++ ++.+..
T Consensus 47 ~~~d~i~~lE~~l-~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMI-EEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHH-HHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3445555666666 455 46999999999999999999999999998865 3 55678888888888888 999999
Q ss_pred HHHHHHhCC-CCCCcccHHHHHHHhhcCCCh--------HHHHHHHHHHHH-hCC-CC-chhHHHHHHHHHHh-------
Q 008276 117 VYKNMSVHG-FDPDCYTYPCVLKACSGSNSL--------LVGLQIHCSVVK-VGL-DY-NLFNGNGLVAMYGK------- 177 (571)
Q Consensus 117 ~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~-~~~~~~~l~~~~~~------- 177 (571)
+|++..... ..|+...|..-+.-..+.++. +...++|+..+. .|. .+ +...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998763 137777777766655444432 344577777665 365 44 35678887776543
Q ss_pred --CCCHHHHHHHHccCCC-CCc---hhHHHHHHHHHhCCC-------------chHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008276 178 --CGCLKEARRVLNDMPS-KDV---VTWNSMVAGYAQNGR-------------FDEALDVCREMESLRIKPDADTMASLL 238 (571)
Q Consensus 178 --~g~~~~A~~~~~~~~~-~~~---~~~~~li~~~~~~g~-------------~~~a~~~~~~m~~~g~~p~~~t~~~ll 238 (571)
.++++.+..+|+.... |.. .+|......-...+. ++.|...+.++... .
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~------------~ 272 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNI------------T 272 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHH------------T
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHH------------H
Confidence 3457888899988775 321 233222111111111 11222222222110 0
Q ss_pred HHhcCCCCccHHHHHHHHhhCCCCC------hhhHHHHHHHHHHcC-------CchHHHHHHHHHHHCCCCCCHHHHHHH
Q 008276 239 PSVTNTSPENVLSVKEMFLKLDNKN------LVSWNVMIAVYANNS-------MPAEAVDLYLQMEVHGIEPNAISVASV 305 (571)
Q Consensus 239 ~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~l 305 (571)
..+.+.-......+ .....+.++ ...|...+..--..+ ..+++..+|++.+.. ++-....|...
T Consensus 273 ~~l~r~~p~~~~~~--~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~y 349 (679)
T 4e6h_A 273 KGLKRNLPITLNQA--TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNM 349 (679)
T ss_dssp TTCCCCCCSSSTTC--CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHH
T ss_pred HhHhhccccccccc--hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHH
Confidence 00000000000000 000000000 123444443322222 123456677777664 24466777777
Q ss_pred HHHhccCCchHHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------------CC-------
Q 008276 306 LPACGDLSALLLGR-KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-------------QD------- 364 (571)
Q Consensus 306 l~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~------- 364 (571)
+.-+...|+.+.|. .+|+...... +.+...+...+....+.|++++|.++|+.+.. |+
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~ 428 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ 428 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhh
Confidence 77777778888886 9999988753 55666777788888889999999999988763 31
Q ss_pred -----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCCCCHHH
Q 008276 365 -----VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH-AGLLEEGRYYFKIMTEQYKLVPRIEH 438 (571)
Q Consensus 365 -----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~ 438 (571)
...|...+....+.|+.+.|..+|.++++.-..+....|...+..-.+ .++.+.|..+|+...+. ++.+...
T Consensus 429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~ 506 (679)
T 4e6h_A 429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEY 506 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHH
T ss_pred hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHH
Confidence 235788888888899999999999999885111223344333333233 35589999999999985 3456667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 008276 439 FACLVDLLGRAGKVEEAYDLIKQM-PMEP----NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG 503 (571)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 503 (571)
+...++.....|+.+.|..+|++. ...| ....|...+..-.+.|+.+.+..+.+++.+..|+++.
T Consensus 507 w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 507 INKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 788888888999999999999987 3333 3457888888888999999999999999999998753
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=3.4e-13 Score=132.25 Aligned_cols=171 Identities=16% Similarity=0.087 Sum_probs=122.6
Q ss_pred HHHHHHHHhhCCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhcCCC
Q 008276 350 LTEARTVFDQMRC-----Q----DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL-CPD----SIAFVSVLSACSHAGL 415 (571)
Q Consensus 350 ~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~ 415 (571)
+++|...++...+ + ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 5666555554431 1 123577788888888999999988888765210 112 2367778888899999
Q ss_pred HHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCC
Q 008276 416 LEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM----PMEPN----ERIWGSLVAACCLYSN 483 (571)
Q Consensus 416 ~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~ 483 (571)
+++|...+++..+...-.++ ..++..+...|...|++++|.+.+++. ...++ ..++..+...+...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999887653221122 456788899999999999999998876 11122 5577888889999999
Q ss_pred HHHHHHHHHHHHhhC------CCCchhHHHHHHHHHhcCCHHH
Q 008276 484 MDIGILAADHIFHLA------PNQSGYYVLLSNIYAKAGRWGD 520 (571)
Q Consensus 484 ~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 520 (571)
+++|...++++.++. +....++..++.++...|+...
T Consensus 323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999999998864 2335578888888888887643
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=1e-12 Score=129.24 Aligned_cols=271 Identities=11% Similarity=-0.037 Sum_probs=185.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcC
Q 008276 199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNS 278 (571)
Q Consensus 199 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 278 (571)
+..+...+...|++++|+..|+++.+.+ |+.... -...|..+...|...|
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~----------------------------~~~~~~~lg~~~~~~g 100 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRT----------------------------LSAIYSQLGNAYFYLG 100 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH----------------------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhH----------------------------HHHHHHHHHHHHHHCC
Confidence 3445566677777777777777776532 221000 0134566667777777
Q ss_pred CchHHHHHHHHHHHC----CC-CCCHHHHHHHHHHhccCCchHHHHHHHHHHHHc----C-CCCChhHHHHHHHHHHhcC
Q 008276 279 MPAEAVDLYLQMEVH----GI-EPNAISVASVLPACGDLSALLLGRKIHRYVERK----K-LQPNLRLENALVDMYAKCG 348 (571)
Q Consensus 279 ~~~~A~~~~~~m~~~----g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~ 348 (571)
++++|...+++..+. +. ......+..+...+...|++++|...++.+.+. + .+....++..+...|...|
T Consensus 101 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 777777777766542 11 112355666666777777777777777766543 1 1122345666777778888
Q ss_pred C-----------------HHHHHHHHhhCCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC--
Q 008276 349 S-----------------LTEARTVFDQMRC-----Q----DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC-PD-- 399 (571)
Q Consensus 349 ~-----------------~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~-- 399 (571)
+ +++|...+++..+ . ....+..+...+...|++++|+..+++..+.... ++
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 8 7888777766542 1 2246778888899999999999999988763110 12
Q ss_pred --HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC
Q 008276 400 --SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM-------PMEP 466 (571)
Q Consensus 400 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p 466 (571)
..++..+...+...|++++|...+++..+...-..+ ...+..+...+...|++++|.+.+++. +..+
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 226788888999999999999999887664221112 467788899999999999999999877 1111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 008276 467 -NERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499 (571)
Q Consensus 467 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 499 (571)
...++..+...+...|++++|...++++.++.+
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 244777888899999999999999999998775
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.44 E-value=2e-12 Score=134.25 Aligned_cols=162 Identities=18% Similarity=0.196 Sum_probs=144.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 008276 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV 443 (571)
Q Consensus 365 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 443 (571)
...|+.|...|.+.|++++|++.|++.++ +.|+ ...|..+..++.+.|++++|+..|++..+. .+.+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 45788899999999999999999999998 5665 558899999999999999999999999874 234568899999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHH
Q 008276 444 DLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV 521 (571)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 521 (571)
.+|...|++++|++.|++. .+.| +...|..+..++...|++++|+..|+++++++|++..++..++.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999987 5566 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 008276 522 KRVRKFMNS 530 (571)
Q Consensus 522 ~~~~~~m~~ 530 (571)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887763
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=3.4e-12 Score=109.94 Aligned_cols=167 Identities=12% Similarity=0.050 Sum_probs=138.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276 333 NLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409 (571)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 409 (571)
+..+|..+...|...|++++|.+.|++..+ .+...|..+...|.+.|++++|+..+.+..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 556777788888888888888888887764 356778888889999999999999999988842 2345577777788
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 008276 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIG 487 (571)
Q Consensus 410 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 487 (571)
+...++++.+...+.+..+. .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88999999999999998874 3456678888999999999999999999987 4455 678899999999999999999
Q ss_pred HHHHHHHHhhCCCCc
Q 008276 488 ILAADHIFHLAPNQS 502 (571)
Q Consensus 488 ~~~~~~~~~~~p~~~ 502 (571)
+..|+++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998654
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=3.8e-12 Score=123.77 Aligned_cols=235 Identities=9% Similarity=-0.014 Sum_probs=120.9
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCC-CC----CHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 008276 270 MIAVYANNSMPAEAVDLYLQMEVHGI-EP----NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMY 344 (571)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~m~~~g~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 344 (571)
....+...|++++|+..+++..+.-. .+ ...++..+...+...|+++.|...+....+.........
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------- 180 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN-------- 180 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH--------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch--------
Confidence 44555666666666666666654210 11 123444455555555555555555555443210000000
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhcCCCHHHH
Q 008276 345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS----GLCPD-SIAFVSVLSACSHAGLLEEG 419 (571)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a 419 (571)
.....+++.+...|...|++++|+..+++..+. +-.+. ..++..+...+...|++++|
T Consensus 181 -----------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 181 -----------------IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp -----------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 001124455555566666666666666555431 10110 12455566666666666666
Q ss_pred HHHHHHHHHhc---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-----CC-CHHHHHHHHHHHHhcCC---HH
Q 008276 420 RYYFKIMTEQY---KL-VPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PM-----EP-NERIWGSLVAACCLYSN---MD 485 (571)
Q Consensus 420 ~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p-~~~~~~~l~~~~~~~g~---~~ 485 (571)
...+++..+.. +. +....++..+...+.+.|++++|.+.+++. .. .| ....+..+...+...|+ ++
T Consensus 244 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 323 (383)
T 3ulq_A 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQ 323 (383)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHH
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 66666654410 11 222345666666666666666666666654 10 11 12223445555666666 55
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 486 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
+|+..+++. ...|....++..++.+|...|++++|..++++..+
T Consensus 324 ~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 324 GFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566655554 22233445666777777777777777777777653
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=5.9e-11 Score=111.43 Aligned_cols=219 Identities=11% Similarity=0.050 Sum_probs=153.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHhc-------cCCch-------HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 008276 281 AEAVDLYLQMEVHGIEPNAISVASVLPACG-------DLSAL-------LLGRKIHRYVERKKLQPNLRLENALVDMYAK 346 (571)
Q Consensus 281 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (571)
++|..+|++..... +-+...|..+...+. ..|++ ++|..+|+...+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57777888877642 345556666655543 34665 7888888888873224455677778888888
Q ss_pred cCCHHHHHHHHhhCCC--C-Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh-cCCCHHHHHH
Q 008276 347 CGSLTEARTVFDQMRC--Q-DVV-SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS-HAGLLEEGRY 421 (571)
Q Consensus 347 ~~~~~~a~~~~~~~~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~~~~~~a~~ 421 (571)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887764 3 233 68888888888888888888888888742 233444443333322 3688888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-P---MEP--NERIWGSLVAACCLYSNMDIGILAADHIF 495 (571)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 495 (571)
+|++..+.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++....+.|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887642 345677788888888888888888888877 2 244 35677777887788888888888888888
Q ss_pred hhCCCCch
Q 008276 496 HLAPNQSG 503 (571)
Q Consensus 496 ~~~p~~~~ 503 (571)
+..|++..
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 88876543
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=4.2e-12 Score=120.73 Aligned_cols=235 Identities=15% Similarity=0.055 Sum_probs=155.0
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHHC----CCCC-CHHHHHHHHHHhccCCchHHHHHHHHHHHHcCC-CCC----hh
Q 008276 266 SWNVMIAVYANNSMPAEAVDLYLQMEVH----GIEP-NAISVASVLPACGDLSALLLGRKIHRYVERKKL-QPN----LR 335 (571)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 335 (571)
.+..+...|...|++++|...+++.... +..| ....+..+...+...|++++|...++...+... .++ ..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 4555566666667777776666665432 1111 134455556666667777777776666554210 011 23
Q ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHH
Q 008276 336 LENALVDMYAKCGS--------------------LTEARTVFDQMRC-----QD----VVSWTSMISAYGMSGQGYDAVA 386 (571)
Q Consensus 336 ~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~ 386 (571)
++..+...|...|+ +++|...+++..+ ++ ...+..+...+...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55566667777777 7777777665532 11 3357778888888999999999
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 008276 387 LFSKMLMSGL-CPD----SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYD 457 (571)
Q Consensus 387 ~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 457 (571)
.+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9988765210 111 226777888888999999999999887653221222 4567788899999999999999
Q ss_pred HHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276 458 LIKQM-------PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500 (571)
Q Consensus 458 ~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 500 (571)
.++++ +..+ ...++..+...+...|++++|...++++.++.+.
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 98876 1111 2446778888999999999999999999887653
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.42 E-value=4.7e-10 Score=115.04 Aligned_cols=418 Identities=7% Similarity=-0.022 Sum_probs=275.2
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCC---hHHHHHHHHHHHHhC-CCCchhHH
Q 008276 93 KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS---LLVGLQIHCSVVKVG-LDYNLFNG 168 (571)
Q Consensus 93 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~~ 168 (571)
.|..+|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++ ++.+..+|++.+... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 37889999999999999999999999999886 45566677777887778888 999999999998764 23788888
Q ss_pred HHHHHHHHhCCCH--------HHHHHHHccCC------CC-CchhHHHHHHHHHh---------CCCchHHHHHHHHHHH
Q 008276 169 NGLVAMYGKCGCL--------KEARRVLNDMP------SK-DVVTWNSMVAGYAQ---------NGRFDEALDVCREMES 224 (571)
Q Consensus 169 ~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~ 224 (571)
...+....+.++. +...++|+... .+ +...|...+..... .++++.+..+|++++.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8888766665543 33446666532 22 34567777765432 3346778888888875
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHH--CCCC------
Q 008276 225 LRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV--HGIE------ 296 (571)
Q Consensus 225 ~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~--~g~~------ 296 (571)
.....-..+|..... +-... +..+...++.- ...+++.|...+.++.. .++.
T Consensus 223 iP~~~~~~~w~~Y~~---------------fe~~~---~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~ 282 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQ---------------WEQDV---NQLTARRHIGE--LSAQYMNARSLYQDWLNITKGLKRNLPIT 282 (679)
T ss_dssp SCCSSHHHHHHHHHH---------------HHHHH---CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred CccHHHHHHHHHHHH---------------HHHhc---CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence 211111222211110 00000 00011111111 11234444444444321 1110
Q ss_pred ---------C-----C---HHHHHHHHHHhccCC-------chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 008276 297 ---------P-----N---AISVASVLPACGDLS-------ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352 (571)
Q Consensus 297 ---------~-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (571)
| + ...|...+.---..+ ..+.+..+|++.+... +....+|...+..+...|+.++
T Consensus 283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDST 361 (679)
T ss_dssp STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTT
T ss_pred cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHH
Confidence 1 0 122333332211111 1234566788887764 5577888888888888899888
Q ss_pred HH-HHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---------CCCC------------HHHHHHHH
Q 008276 353 AR-TVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSG---------LCPD------------SIAFVSVL 407 (571)
Q Consensus 353 a~-~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------~~p~------------~~~~~~l~ 407 (571)
|. .+|+.... | +...|...+...-+.|++++|.++|+++++.. -.|+ ...|...+
T Consensus 362 a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 362 VITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 96 99988764 4 55567788888899999999999999988731 0132 23677777
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH
Q 008276 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG-KVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNM 484 (571)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~ 484 (571)
....+.|+.+.|..+|..+.+.. -......|...+..-.+.+ +.+.|.++|+.. ....+...|..++......|+.
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH
Confidence 87788899999999999998741 1223344444444444544 589999999987 3233667778888888889999
Q ss_pred HHHHHHHHHHHhhCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008276 485 DIGILAADHIFHLAPN---QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533 (571)
Q Consensus 485 ~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 533 (571)
+.|..+|++++...|+ ....|..++..-.+.|+.+.+..+.+++.+.-.
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999998873 456788888888899999999999999987643
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=1.7e-11 Score=115.09 Aligned_cols=213 Identities=8% Similarity=0.027 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHH-------hcCCH-------HHHHHHHhhCCC---C-ChhHHHHHHHHHHh
Q 008276 316 LLGRKIHRYVERKKLQPNLRLENALVDMYA-------KCGSL-------TEARTVFDQMRC---Q-DVVSWTSMISAYGM 377 (571)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~---~-~~~~~~~li~~~~~ 377 (571)
+.|..+|+.+.+.. +.+...|..++..+. ..|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67788888888764 567778887777765 35775 899999998754 3 45689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCHHH
Q 008276 378 SGQGYDAVALFSKMLMSGLCPD-SI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG-RAGKVEE 454 (571)
Q Consensus 378 ~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 454 (571)
.|++++|..+|+++.+ +.|+ .. .|..++..+.+.|++++|..+|+++.+. .+++...|...+.... ..|+.++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 5664 33 7888999999999999999999999864 2344555654444432 3699999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CC-CCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276 455 AYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHL---AP-NQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528 (571)
Q Consensus 455 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 528 (571)
|.++|++. ...| +...|..++..+.+.|++++|..+|+++++. .| .....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 3334 6788999999999999999999999999996 44 36778999999999999999999999999
Q ss_pred HhCCC
Q 008276 529 NSKGI 533 (571)
Q Consensus 529 ~~~~~ 533 (571)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87653
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=1.7e-11 Score=105.31 Aligned_cols=163 Identities=15% Similarity=0.052 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008276 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446 (571)
Q Consensus 367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (571)
.|..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+. .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 3455556666666777777766666553 1224556666666777777777777777776653 234556667777777
Q ss_pred HhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 008276 447 GRAGKVEEAYDLIKQM-PM-EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV 524 (571)
Q Consensus 447 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 524 (571)
...|++++|.+.++++ .. +.+...+..+...+...|++++|...++++.+..|.++.++..++.++...|++++|..+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777766 22 235667777788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCC
Q 008276 525 RKFMNSKG 532 (571)
Q Consensus 525 ~~~m~~~~ 532 (571)
+++..+..
T Consensus 167 ~~~~~~~~ 174 (186)
T 3as5_A 167 FKKANELD 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 88876543
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=6.1e-13 Score=125.24 Aligned_cols=237 Identities=15% Similarity=0.081 Sum_probs=127.1
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHc------C
Q 008276 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-------GIEPNAISVASVLPACGDLSALLLGRKIHRYVERK------K 329 (571)
Q Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 329 (571)
+..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...++.+.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456778888888899999999888888752 11223455666666677777777777777666543 1
Q ss_pred C-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHH
Q 008276 330 L-QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS------GLCP-DSI 401 (571)
Q Consensus 330 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~ 401 (571)
. +....+ +..+...|...|++++|...++++.+. +..| ...
T Consensus 106 ~~~~~~~~-------------------------------~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVAAT-------------------------------LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHHHH-------------------------------HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CChHHHHH-------------------------------HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 1 112233 344444444455555555555444432 1112 122
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhc-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C---------CC
Q 008276 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQY-----K-LVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-P---------ME 465 (571)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~ 465 (571)
.+..+...+...|++++|..+++++.+.. + .+.....+..+...|...|++++|.+.++++ . ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45555555666666666666666554420 0 1112234555666666666666666666554 1 11
Q ss_pred CCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 466 PNE-------RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 466 p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
+.. ..+..+...+...+.+.++...++++....|....++..++.+|.+.|++++|.+++++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111 11122222333455666667777777777777788888888888888888888888887754
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=3.5e-10 Score=109.42 Aligned_cols=264 Identities=13% Similarity=0.020 Sum_probs=189.5
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHH----HHHHHHHHhccCCchHHHHHHHHHHHHcCC-CCC----hhHH
Q 008276 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI----SVASVLPACGDLSALLLGRKIHRYVERKKL-QPN----LRLE 337 (571)
Q Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~ 337 (571)
.......+...|++++|...+++........+.. .+..+...+...|+++.|...++...+... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445566778999999999999987754222222 455566677888999999999988775321 111 2235
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--CHHH
Q 008276 338 NALVDMYAKCGSLTEARTVFDQMRC-------Q----DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC--P--DSIA 402 (571)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~ 402 (571)
..+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++..+.... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 5677788999999999998887652 1 1235667888899999999999999998763221 1 2346
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHH
Q 008276 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA-----CLVDLLGRAGKVEEAYDLIKQM-PMEPN-----ERIW 471 (571)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~ 471 (571)
+..+...+...|++++|...+++.............+. ..+..+...|++++|...+++. ...|. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77788888999999999999998875422211111121 2345577899999999999988 22221 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----C-chhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 472 GSLVAACCLYSNMDIGILAADHIFHLAPN-----Q-SGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
..+...+...|++++|...++++....+. + ..++..++.++...|++++|...+++..+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67778888999999999999998875422 1 23677888999999999999999888764
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=1.5e-11 Score=119.58 Aligned_cols=189 Identities=8% Similarity=-0.060 Sum_probs=139.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC--C---CC-CHHHHH
Q 008276 340 LVDMYAKCGSLTEARTVFDQMRC-----QD----VVSWTSMISAYGMSGQGYDAVALFSKMLMSG--L---CP-DSIAFV 404 (571)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~---~p-~~~~~~ 404 (571)
....+...|++++|...|+...+ ++ ..++..+...|...|++++|+..+++..+.- . .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 33445566666666666665532 22 2457777888888888888888888876521 1 11 134788
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhC-C-----CC-C-CHHHHH
Q 008276 405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI----EHFACLVDLLGRAGKVEEAYDLIKQM-P-----ME-P-NERIWG 472 (571)
Q Consensus 405 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~-p-~~~~~~ 472 (571)
.+...|...|++++|...+++..+...-.++. .++..+..+|...|++++|.+.+++. . .. | ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 88999999999999999999887542222222 47888999999999999999999877 1 22 4 456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCchhHHHHHHHHHhcCC---HHHHHHHHHHH
Q 008276 473 SLVAACCLYSNMDIGILAADHIFHLA-----PNQSGYYVLLSNIYAKAGR---WGDVKRVRKFM 528 (571)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m 528 (571)
.+...+...|++++|...++++++.. |.....+..++.+|...|+ +++|+.++++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 89999999999999999999998864 3334446778899999999 78888877765
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=1.7e-12 Score=122.12 Aligned_cols=238 Identities=10% Similarity=0.024 Sum_probs=145.1
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHhhCCC-----------CChhhHHHHHHHHHHcCCchHHHHHHHHHHHC------
Q 008276 231 ADTMASLLPSVTNTSPENVLSVKEMFLKLDN-----------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH------ 293 (571)
Q Consensus 231 ~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------ 293 (571)
..++..+...+...++ .+.|...+++... .....+..+...|...|++++|..++++....
T Consensus 27 ~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGR--YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 4556666777777777 7777777766543 23456888999999999999999999998764
Q ss_pred CCCC-CHHHHHHHHHHhccCCchHHHHHHHHHHHHc------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh
Q 008276 294 GIEP-NAISVASVLPACGDLSALLLGRKIHRYVERK------KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV 366 (571)
Q Consensus 294 g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (571)
+-.| ....+..+...+...|++++|...++.+.+. +..|. ...
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------------------------~~~ 154 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------------------------------VAK 154 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------------------------------HHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------------------------------HHH
Confidence 2222 3467778888899999999999999887753 11111 122
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc------CCC
Q 008276 367 SWTSMISAYGMSGQGYDAVALFSKMLMS------GLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQY------KLV 433 (571)
Q Consensus 367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~ 433 (571)
.+..+...+...|++++|+++++++.+. +..|+ ..++..+...+...|++++|...++++.+.. ...
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3444455555555566666555555442 11222 2356666666777777777777776665420 011
Q ss_pred CC-------HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276 434 PR-------IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500 (571)
Q Consensus 434 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 500 (571)
+. ...+..+...+...+.+.+|...+++. ...| ...++..+...|...|++++|...+++++++.|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 111222333344445555566666665 2334 4567888999999999999999999999987764
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.35 E-value=2.9e-11 Score=108.07 Aligned_cols=188 Identities=11% Similarity=-0.073 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 008276 334 LRLENALVDMYAKCGSLTEARTVFDQMRC----QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-SIAFVSVLS 408 (571)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~ 408 (571)
+..+......+...|++++|...|+...+ ++...+..+..++...|++++|+..|++..+ ..|+ ...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 34455555555555666666655555432 3444444455555555666666666665555 3333 234555555
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 008276 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRI-------EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN---ERIWGSLVAA 477 (571)
Q Consensus 409 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~ 477 (571)
.+...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.|+++ ...|+ ...|..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 5555566666666665555431 1222 33444555555555555555555554 33443 2334444444
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 478 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
+.. .+...++++..+.+.+...|... .....|.+++|+.++++..+..
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 432 22333444444444443333322 2233445599999999988654
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=8.6e-11 Score=104.98 Aligned_cols=204 Identities=11% Similarity=0.079 Sum_probs=161.2
Q ss_pred CCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHH
Q 008276 297 PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMIS 373 (571)
Q Consensus 297 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~ 373 (571)
.|...+......+...|++++|...|+...+...+++...+..+..++...|++++|...|+...+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456788888889999999999999999999987547777777799999999999999999998864 3 4567899999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHH
Q 008276 374 AYGMSGQGYDAVALFSKMLMSGLCPD-S-------IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR---IEHFACL 442 (571)
Q Consensus 374 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 442 (571)
.|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|...|+++.+. .|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence 999999999999999999984 454 4 45777888889999999999999999853 454 5678888
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276 443 VDLLGRAGKVEEAYDLIKQM-PM-EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512 (571)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 512 (571)
..+|...|+. +++++ .+ ..+...|.... ....+.+++|+..++++.+++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 8888766543 23332 11 22344444333 33467799999999999999999998888776653
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.33 E-value=2.9e-11 Score=120.67 Aligned_cols=209 Identities=11% Similarity=-0.015 Sum_probs=165.5
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCch-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 008276 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL-LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358 (571)
Q Consensus 280 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 358 (571)
+++++..+++..... +.+...+..+...+...|++ ++|...|+.+.+.. +.+...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566667777655432 34677788888888888888 88988888888875 4557788888888889999999999888
Q ss_pred hCCC--CChhHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcC--------CCHHH
Q 008276 359 QMRC--QDVVSWTSMISAYGMS---------GQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHA--------GLLEE 418 (571)
Q Consensus 359 ~~~~--~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~--------~~~~~ 418 (571)
...+ |+...+..+...+... |++++|+..|++..+. .| +...|..+..++... |++++
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 8764 6767788888888888 9999999999998884 44 466888888888887 88999
Q ss_pred HHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008276 419 GRYYFKIMTEQYKLV---PRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADH 493 (571)
Q Consensus 419 a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (571)
|...|+++.+. .+ .+...|..+..+|...|++++|.+.|+++ ...| +...+..+...+...|++++|+..+.+
T Consensus 240 A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999998874 12 36788888999999999999999999887 4455 566788888888888888888876544
Q ss_pred H
Q 008276 494 I 494 (571)
Q Consensus 494 ~ 494 (571)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.32 E-value=1.1e-10 Score=113.15 Aligned_cols=161 Identities=13% Similarity=0.011 Sum_probs=84.1
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCC-C-----Chh
Q 008276 267 WNVMIAVYANNSMPAEAVDLYLQMEVHGI-EPN----AISVASVLPACGDLSALLLGRKIHRYVERKKLQ-P-----NLR 335 (571)
Q Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~ 335 (571)
+......+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...++...+.... + ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 33455677889999999999999875421 122 345666667777778888777777776642100 1 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHH
Q 008276 336 LENALVDMYAKCGSLTEARTVFDQMRC-----QD----VVSWTSMISAYGMSGQGYDAVALFSKMLM-----SGLCPDSI 401 (571)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~ 401 (571)
+++.+..+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..+++..+ .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 344455555555555555555544331 11 12344444444444555555544444443 11 11123
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276 402 AFVSVLSACSHAGLLEEGRYYFKIMTE 428 (571)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 428 (571)
++..+...+.+.|++++|...+++..+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=1.6e-10 Score=99.19 Aligned_cols=168 Identities=14% Similarity=0.018 Sum_probs=143.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 008276 334 LRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410 (571)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 410 (571)
...+..+...+...|++++|...++.+.+ .+...+..+...+...|++++|...++++.+. .+.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH
Confidence 34566677888999999999999999875 36678889999999999999999999999885 233567888899999
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 008276 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGI 488 (571)
Q Consensus 411 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 488 (571)
...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999874 3456788889999999999999999999987 3334 6788999999999999999999
Q ss_pred HHHHHHHhhCCCCchh
Q 008276 489 LAADHIFHLAPNQSGY 504 (571)
Q Consensus 489 ~~~~~~~~~~p~~~~~ 504 (571)
..++++.+..|++...
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998876643
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.27 E-value=2.7e-10 Score=110.45 Aligned_cols=225 Identities=9% Similarity=-0.039 Sum_probs=169.5
Q ss_pred HHHHhccCCchHHHHHHHHHHHHcCC-CC----ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC-----hhHHH
Q 008276 305 VLPACGDLSALLLGRKIHRYVERKKL-QP----NLRLENALVDMYAKCGSLTEARTVFDQMRC-----QD-----VVSWT 369 (571)
Q Consensus 305 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~~~ 369 (571)
....+...|++++|...++.+.+... .+ ...++..+..+|...|+++.|...+++..+ ++ ..+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456788999999999999886421 12 245677888999999999999988887652 22 34688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc---CCCCCHHHHHH
Q 008276 370 SMISAYGMSGQGYDAVALFSKMLMS----GLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY---KLVPRIEHFAC 441 (571)
Q Consensus 370 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~ 441 (571)
.+...|...|++++|++.|++..+. +..+ ...++..+...+...|++++|...+++..+.. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8999999999999999999988762 1111 12367888889999999999999999987621 22223577888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 008276 442 LVDLLGRAGKVEEAYDLIKQM----PM--EPN-ERIWGSLVAACCLYSN---MDIGILAADHIFHLAPNQSGYYVLLSNI 511 (571)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 511 (571)
+...+.+.|++++|...+++. .. .|. ...+..+...+...++ +++|+..+++. ...|.....+..++..
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 999999999999999999876 11 232 3345555566667888 77787777762 2224455678899999
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 008276 512 YAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~ 530 (571)
|...|++++|..++++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998764
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=2.3e-10 Score=105.75 Aligned_cols=222 Identities=16% Similarity=0.161 Sum_probs=152.9
Q ss_pred ccCCchHHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----ChhHHHHH
Q 008276 310 GDLSALLLGRKIHRYVERK-------KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-------Q----DVVSWTSM 371 (571)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~l 371 (571)
...|+++.|...+++..+. ..+....++..+...|...|++++|...++++.+ + ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776652 2233456778888999999999999998887652 1 23468888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc-----C-CCCCHHH
Q 008276 372 ISAYGMSGQGYDAVALFSKMLMS------GLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQY-----K-LVPRIEH 438 (571)
Q Consensus 372 i~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~ 438 (571)
...|...|++++|...++++.+. .-.|+ ..++..+...+...|++++|..+++++.+.. + .+.....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999998763 11232 4478888889999999999999999887641 1 1223467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-C---------CCC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhhCCCC
Q 008276 439 FACLVDLLGRAGKVEEAYDLIKQM-P---------MEP-NERIWGSLVAACCLYSN------MDIGILAADHIFHLAPNQ 501 (571)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~p~~ 501 (571)
+..+..+|...|++++|...++++ . ..+ ....|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888899999999999999998876 1 122 22334333333333222 333333333333333556
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
..++..++.+|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678999999999999999999999988653
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.20 E-value=6.3e-09 Score=100.54 Aligned_cols=193 Identities=10% Similarity=-0.053 Sum_probs=111.1
Q ss_pred HHHHHHHhCCCHHHHHHHHccCCC-----CC----chhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276 170 GLVAMYGKCGCLKEARRVLNDMPS-----KD----VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240 (571)
Q Consensus 170 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 240 (571)
.+...+...|++++|...+++... .+ ..++..+...+...|++++|...+++.....
T Consensus 58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~-------------- 123 (373)
T 1hz4_A 58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI-------------- 123 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
Confidence 344444555555555555544332 11 1235667778888899999998888775421
Q ss_pred hcCCCCccHHHHHHHHhhCCC---C-ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCC--C--CHHHHHHHHHHhccC
Q 008276 241 VTNTSPENVLSVKEMFLKLDN---K-NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE--P--NAISVASVLPACGDL 312 (571)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--~--~~~~~~~ll~~~~~~ 312 (571)
..... + ....+..+...+...|++++|...+++....... + ...++..+...+...
T Consensus 124 ----------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 187 (373)
T 1hz4_A 124 ----------------NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 187 (373)
T ss_dssp ----------------HHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH
T ss_pred ----------------HHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc
Confidence 00000 0 1245666778889999999999999988754321 1 234566666777788
Q ss_pred CchHHHHHHHHHHHHcCCCCCh-hHHH-----HHHHHHHhcCCHHHHHHHHhhCCCCCh-------hHHHHHHHHHHhcC
Q 008276 313 SALLLGRKIHRYVERKKLQPNL-RLEN-----ALVDMYAKCGSLTEARTVFDQMRCQDV-------VSWTSMISAYGMSG 379 (571)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~li~~~~~~~ 379 (571)
|++++|...++........++. ..+. ..+..+...|++++|...++....++. ..+..+...+...|
T Consensus 188 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 267 (373)
T 1hz4_A 188 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 267 (373)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcC
Confidence 8888888888877654212111 1111 122335566777777777666654211 12344455555556
Q ss_pred ChHHHHHHHHHHH
Q 008276 380 QGYDAVALFSKML 392 (571)
Q Consensus 380 ~~~~a~~~~~~m~ 392 (571)
++++|...+++..
T Consensus 268 ~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 268 EFEPAEIVLEELN 280 (373)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666555555543
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.19 E-value=2.2e-09 Score=95.40 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008276 473 SLVAACCLYSNMDIGILAADHIFHLAPNQS---GYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534 (571)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 534 (571)
.+...+.+.|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 456678899999999999999999999886 57999999999999999999999999877543
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.18 E-value=4.9e-09 Score=95.39 Aligned_cols=175 Identities=6% Similarity=-0.006 Sum_probs=100.3
Q ss_pred HHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276 353 ARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428 (571)
Q Consensus 353 a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 428 (571)
|...|++... ++...+..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555554442 344445566666666777777777776665543312 334566666667777777777777777654
Q ss_pred hcCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-
Q 008276 429 QYKLVP-----RIEHFACLVDL--LGRAG--KVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHL- 497 (571)
Q Consensus 429 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 497 (571)
. .| +..+...++.+ ....| +.++|..+|+++ ...|+...-..++.++.+.|++++|...++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 34 23334444444 22223 667777777766 33344222233333566677777777777766554
Q ss_pred ---------CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 498 ---------APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 498 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
+|+++.+...++.+....|+ +|.++++++++..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 36666666666666666665 6667776666554
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.18 E-value=1.8e-10 Score=119.57 Aligned_cols=162 Identities=10% Similarity=0.121 Sum_probs=131.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 008276 333 NLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-SIAFVSVLS 408 (571)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~ 408 (571)
+...++.|..+|.+.|++++|.+.|++..+ .+...|+.+...|.+.|++++|++.|++.++ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 456677777888888888888888877653 3566788888888889999999999998888 4564 558888888
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 008276 409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDI 486 (571)
Q Consensus 409 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 486 (571)
++...|++++|++.|++..+. .+.+...|..+..+|...|++++|++.|++. .+.| +...|..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 899999999999999988874 2345678888999999999999999999887 5566 57788888999999999999
Q ss_pred HHHHHHHHHhhC
Q 008276 487 GILAADHIFHLA 498 (571)
Q Consensus 487 A~~~~~~~~~~~ 498 (571)
|.+.+++++++.
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999998887754
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=7.1e-10 Score=103.05 Aligned_cols=171 Identities=9% Similarity=-0.054 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC------
Q 008276 336 LENALVDMYAKCGSLTEARTVFDQMRC-----QD----VVSWTSMISAYGMS-GQGYDAVALFSKMLMSGLCPD------ 399 (571)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~------ 399 (571)
+++.+..+|...|++++|...+++..+ .+ ..+++.+...|... |++++|+..|++..+. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 344444445555555555544444332 11 23566677777775 8888888888777662 221
Q ss_pred -HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH---
Q 008276 400 -SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI-----EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNER--- 469 (571)
Q Consensus 400 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~--- 469 (571)
..++..+...+...|++++|...|++..+...-.+.. ..+..+..++...|++++|...|++. .+.|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 2356777777888888888888888877642222221 24566777777888888888888876 4444321
Q ss_pred ---HHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 008276 470 ---IWGSLVAACC--LYSNMDIGILAADHIFHLAPNQSGYYVLL 508 (571)
Q Consensus 470 ---~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 508 (571)
.+..++.++. ..+++++|+..|+++..++|.....+..+
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 2334455553 35667788887777777776544333333
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.16 E-value=6.5e-11 Score=97.72 Aligned_cols=142 Identities=11% Similarity=0.004 Sum_probs=109.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 008276 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG 450 (571)
Q Consensus 372 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (571)
...+...|++++|+..+++... ..|+.. .+..+...|...|++++|...|++..+. .+.+...|..+..+|...|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 3445566778888888887665 344333 5666788888889999999998888874 2446678888888899999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhCCCCchhHHHHHHHHHhcCC
Q 008276 451 KVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILA-ADHIFHLAPNQSGYYVLLSNIYAKAGR 517 (571)
Q Consensus 451 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 517 (571)
++++|+..|++. .+.| +...|..+...+.+.|++++|... ++++++++|+++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999988887 5566 577888888889999998776654 689999999999999998888888775
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=1.7e-09 Score=98.81 Aligned_cols=188 Identities=10% Similarity=0.028 Sum_probs=117.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 008276 333 NLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-D---VVSWTSMISAYGMSGQGYDAVALFSKMLMSGL-CPD-SIAFV 404 (571)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~ 404 (571)
+...+..+...+.+.|++++|...|+.+.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 334444555566666667777666666653 2 2 34566666677777777777777777766311 112 23455
Q ss_pred HHHHHhhc--------CCCHHHHHHHHHHHHHhcCCCCCHH-H--------------HHHHHHHHHhcCCHHHHHHHHHh
Q 008276 405 SVLSACSH--------AGLLEEGRYYFKIMTEQYKLVPRIE-H--------------FACLVDLLGRAGKVEEAYDLIKQ 461 (571)
Q Consensus 405 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~-~--------------~~~l~~~~~~~g~~~~A~~~~~~ 461 (571)
.+..++.. .|++++|...|+++.+.+.-.+... . +..+...|.+.|++++|+..|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55666666 7777777777777766432222221 1 14567788888999999888887
Q ss_pred C-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCCHHH
Q 008276 462 M-PMEPN----ERIWGSLVAACCLY----------SNMDIGILAADHIFHLAPNQSG---YYVLLSNIYAKAGRWGD 520 (571)
Q Consensus 462 ~-~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~ 520 (571)
+ ...|+ ...+..+..++... |++++|+..++++++..|+++. +...+..++...|++++
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 7 22332 44666677777655 8889999999999999988854 34445555555554443
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=1.8e-09 Score=86.90 Aligned_cols=128 Identities=17% Similarity=0.204 Sum_probs=88.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHh
Q 008276 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PME-PNERIWGSLVAACCL 480 (571)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~ 480 (571)
+..+...+...|++++|..+++.+.+. .+.+...+..++..+...|++++|...++++ ... .+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 444555556666666666666666543 1234455566666666666777776666665 222 245667777777788
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 481 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
.|++++|...++++.+..|.+...+..++.++...|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888888888888888888888888888888876543
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=1.9e-09 Score=98.43 Aligned_cols=168 Identities=10% Similarity=0.000 Sum_probs=138.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC-HH
Q 008276 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD----SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR-IE 437 (571)
Q Consensus 363 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 437 (571)
.+...+..+...+.+.|++++|+..|+++.+. .|+ ...+..+..++...|++++|...|+++.+.+.-.|. ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 45667778888999999999999999999984 343 467888899999999999999999999986443333 45
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHhC-CCCCC-HHHH-----------------HHHHHHHHhcCCHHHHHHH
Q 008276 438 HFACLVDLLGR--------AGKVEEAYDLIKQM-PMEPN-ERIW-----------------GSLVAACCLYSNMDIGILA 490 (571)
Q Consensus 438 ~~~~l~~~~~~--------~g~~~~A~~~~~~~-~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~~ 490 (571)
.+..+..++.. .|++++|...|+++ ...|+ ...+ ..+...+...|++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 67788889988 99999999999987 33342 2233 4567788899999999999
Q ss_pred HHHHHhhCCCC---chhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCC
Q 008276 491 ADHIFHLAPNQ---SGYYVLLSNIYAKA----------GRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 491 ~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~ 532 (571)
|+++++..|++ +.++..++.+|... |++++|...++++.+..
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 99999999884 45889999999877 99999999999998754
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=5.8e-10 Score=103.64 Aligned_cols=228 Identities=11% Similarity=0.034 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhccC-C-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 008276 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDL-S-ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ 359 (571)
Q Consensus 282 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 359 (571)
+|.+++.+..+. .++....+ .++ ... + ++++|...|... ...|...|++++|...|.+
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 466666666554 23222222 222 211 2 478888877765 3457778999988888876
Q ss_pred CCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhcC-CCHHHHHHHHH
Q 008276 360 MRC-----QD----VVSWTSMISAYGMSGQGYDAVALFSKMLMS----GLCPD-SIAFVSVLSACSHA-GLLEEGRYYFK 424 (571)
Q Consensus 360 ~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~-~~~~~a~~~~~ 424 (571)
..+ .+ ..+|+.+...|...|++++|+..|++..+. |-... ..++..+...|... |++++|+..|+
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 643 12 457899999999999999999999998762 11111 34788888999996 99999999999
Q ss_pred HHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---H-----HHHHHHHHHHHhcCCHHHHHHHH
Q 008276 425 IMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN---E-----RIWGSLVAACCLYSNMDIGILAA 491 (571)
Q Consensus 425 ~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~l~~~~~~~g~~~~A~~~~ 491 (571)
+..+...-..+ ..++..+...+.+.|++++|+..|++. ...|+ . ..|..+..++...|++++|+..+
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 98764221112 356888999999999999999999987 32332 1 15677788888999999999999
Q ss_pred HHHHhhCCCCchh-----HHHHHHHHH--hcCCHHHHHHHHHHHH
Q 008276 492 DHIFHLAPNQSGY-----YVLLSNIYA--KAGRWGDVKRVRKFMN 529 (571)
Q Consensus 492 ~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m~ 529 (571)
+++++++|..... +..++.++. ..+++++|+..++++.
T Consensus 223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 9999999876553 345566664 4678999998886553
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=3.2e-09 Score=97.87 Aligned_cols=206 Identities=11% Similarity=0.019 Sum_probs=118.8
Q ss_pred hhhHHHHHHHHHHcCCchHHHHHHHHHHHC------CCCC-CHHHHHHHHHHhccCCchHHHHHHHHHHHHcC----CCC
Q 008276 264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVH------GIEP-NAISVASVLPACGDLSALLLGRKIHRYVERKK----LQP 332 (571)
Q Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~ 332 (571)
..++..+...|...|++++|+..+++..+. +-.| ...++..+...+...|++++|...++.+.+.. .+.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 456778888888999999999988887653 1112 23456666666777777777777766655431 000
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHH
Q 008276 333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS------GLCPD-SIAFVS 405 (571)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~ 405 (571)
+. ....++..+...|...|++++|...++++.+. +-.|+ ..++..
T Consensus 123 ~~----------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 123 HP----------------------------DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp CH----------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred Ch----------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 00 01234555556666666666666666666552 11232 336667
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhc------CCCC-CHHHHHHHHHHHHhcC------CHHHHHHHHHhCC-CCC-CHHH
Q 008276 406 VLSACSHAGLLEEGRYYFKIMTEQY------KLVP-RIEHFACLVDLLGRAG------KVEEAYDLIKQMP-MEP-NERI 470 (571)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~p-~~~~ 470 (571)
+...+...|++++|..+++++.+.. ...+ ....+..+...+...+ .+..+...++... ..| ...+
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 7777777788888887777766431 0111 1223333333333322 2444555555552 223 3557
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 008276 471 WGSLVAACCLYSNMDIGILAADHIFHL 497 (571)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 497 (571)
+..+...|...|++++|...++++++.
T Consensus 255 ~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 255 LRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 788888899999999999999988764
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.07 E-value=4.8e-10 Score=117.01 Aligned_cols=144 Identities=9% Similarity=-0.088 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444 (571)
Q Consensus 366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (571)
..+..+...+...|++++|+..|+++.+. .| +...|..+..++...|++++|...|+++.+. .+.+...+..+..
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~ 509 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAA 509 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 34444455555555555555555555442 22 2334444444555555555555555555442 1223344444555
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 008276 445 LLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514 (571)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 514 (571)
++.+.|++++ ++.|+++ ...| +...|..+..++...|++++|+..|+++++++|.+..++..++.++..
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 5555555555 5555444 2233 344455555555555555555555555555555555555555555444
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.07 E-value=2.9e-09 Score=98.53 Aligned_cols=174 Identities=9% Similarity=-0.041 Sum_probs=139.5
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008276 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429 (571)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 429 (571)
+.....+......+...+..+...+...|++++|+..|++..+ ..| +...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3444444444444556677788888999999999999999988 455 5568888999999999999999999998754
Q ss_pred cCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chh
Q 008276 430 YKLVPRIEHF-ACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ--SGY 504 (571)
Q Consensus 430 ~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 504 (571)
.|+.... ......+...++.++|.+.+++. ...| +...+..+...+...|++++|+..|+++++.+|++ ..+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 4454332 23333466778888888888877 4455 67889999999999999999999999999999988 889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 505 YVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 505 ~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
+..++.++...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999999888754
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=8.9e-09 Score=82.75 Aligned_cols=131 Identities=20% Similarity=0.264 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008276 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446 (571)
Q Consensus 367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (571)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56777888888999999999999988742 235667888888888899999999999998874 244567788889999
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276 447 GRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500 (571)
Q Consensus 447 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 500 (571)
...|++++|.+.++++ ...| +...+..+...+...|++++|...++++.+.+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999887 3333 6778888899999999999999999999998875
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=9.2e-09 Score=93.58 Aligned_cols=215 Identities=9% Similarity=-0.006 Sum_probs=149.1
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 008276 270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349 (571)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 349 (571)
+.++|...|+++.. ..-.|....+..+...+ ..+ +...++...+.+ .++...+..+..++...|+
T Consensus 51 ~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~ 115 (310)
T 3mv2_B 51 KAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGD 115 (310)
T ss_dssp HHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 34666777766532 11234433444433333 222 566677666554 4555555678888999999
Q ss_pred HHHHHHHHhhCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHh--hc--CCC
Q 008276 350 LTEARTVFDQMRC-----QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-----DSIAFVSVLSAC--SH--AGL 415 (571)
Q Consensus 350 ~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~~~~l~~~~--~~--~~~ 415 (571)
+++|.+++..... .+...+..++..+.+.|+.+.|.+.+++|.+ ..| +..+...++.++ .. .++
T Consensus 116 ~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~ 193 (310)
T 3mv2_B 116 LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEMILNLAESYIKFATNKET 193 (310)
T ss_dssp HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHHHHHHHHHHHHHHhCCcc
Confidence 9999999988743 2456788889999999999999999999988 567 355666666552 22 348
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CC-CHHHHHHHHHHHHhcCC
Q 008276 416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PM----------EP-NERIWGSLVAACCLYSN 483 (571)
Q Consensus 416 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p-~~~~~~~l~~~~~~~g~ 483 (571)
+.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+ .. .| ++.++..+|......|+
T Consensus 194 ~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 194 ATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp TTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 99999999998754 455333334444889999999999999865 21 25 56677566666666777
Q ss_pred HHHHHHHHHHHHhhCCCCchhHH
Q 008276 484 MDIGILAADHIFHLAPNQSGYYV 506 (571)
Q Consensus 484 ~~~A~~~~~~~~~~~p~~~~~~~ 506 (571)
+|.++++++.+..|+++.+..
T Consensus 271 --~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 271 --DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp --TTHHHHHHHHHTTCCCHHHHH
T ss_pred --HHHHHHHHHHHhCCCChHHHH
Confidence 899999999999999875443
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.01 E-value=4.1e-09 Score=108.11 Aligned_cols=159 Identities=14% Similarity=0.040 Sum_probs=125.1
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHH
Q 008276 347 CGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYY 422 (571)
Q Consensus 347 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 422 (571)
.|++++|...+++..+ .+...|..+...+...|++++|.+.|++..+. .| +...+..+...+...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998875 35678999999999999999999999999984 45 466888899999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhh
Q 008276 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLY---SNMDIGILAADHIFHL 497 (571)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 497 (571)
+++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999875 2445788899999999999999999999987 4445 677888899999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 008276 498 APNQSGYYVLLS 509 (571)
Q Consensus 498 ~p~~~~~~~~l~ 509 (571)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988888776
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.01 E-value=3.1e-08 Score=86.99 Aligned_cols=162 Identities=12% Similarity=-0.059 Sum_probs=128.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHhcCCCCCHHH
Q 008276 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG----LLEEGRYYFKIMTEQYKLVPRIEH 438 (571)
Q Consensus 363 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 438 (571)
.++..+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|..+|++..+. .+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 466677777888888888999999998888865 56667777777777 6 889999999988663 35667
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHH
Q 008276 439 FACLVDLLGR----AGKVEEAYDLIKQM-PMEPN---ERIWGSLVAACCL----YSNMDIGILAADHIFHLAPNQSGYYV 506 (571)
Q Consensus 439 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 506 (571)
+..|...|.. .+++++|.+.|++. ...|. +..+..|...|.. .+++++|+..|+++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7778888876 78899999999887 44443 6788888888887 78899999999999888 56677888
Q ss_pred HHHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 008276 507 LLSNIYAKA-G-----RWGDVKRVRKFMNSKGI 533 (571)
Q Consensus 507 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 533 (571)
.|+.+|... | ++++|...+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999988764 3 89999999998887764
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.98 E-value=1.2e-08 Score=95.38 Aligned_cols=219 Identities=14% Similarity=0.022 Sum_probs=154.8
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-CCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 008276 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD-LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART 355 (571)
Q Consensus 277 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 355 (571)
.|++++|.+++++..+.. +.. +.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 467788888888776532 111 122 46777777777654 346777888888888
Q ss_pred HHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHhhcCCCHHHHHH
Q 008276 356 VFDQMRC-----QD----VVSWTSMISAYGMSGQGYDAVALFSKMLMSG---LCPD--SIAFVSVLSACSHAGLLEEGRY 421 (571)
Q Consensus 356 ~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~~~~l~~~~~~~~~~~~a~~ 421 (571)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8776643 12 3468888899999999999999999876521 1121 3467788888888 99999999
Q ss_pred HHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 008276 422 YFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM-PM---EPN----ERIWGSLVAACCLYSNMDIGIL 489 (571)
Q Consensus 422 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~~ 489 (571)
.|++..+...-..+ ..++..+...|.+.|++++|++.|++. .+ .++ ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988764221111 357888999999999999999999987 11 112 2356666677778899999999
Q ss_pred HHHHHHhhCCCCchh-----HHHHHHHHHhcCCHHHHHHH
Q 008276 490 AADHIFHLAPNQSGY-----YVLLSNIYAKAGRWGDVKRV 524 (571)
Q Consensus 490 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 524 (571)
.|++++ ..|..... ...++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 88865443 33455544 56777766663
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.98 E-value=6e-10 Score=91.89 Aligned_cols=123 Identities=12% Similarity=-0.028 Sum_probs=102.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 008276 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPR-IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYS 482 (571)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 482 (571)
|...+...|++++|+..++.... ..|+ ...+..+...|.+.|++++|++.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34556677899999999988764 2333 345667899999999999999999988 5566 7889999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHH-HHHHHhC
Q 008276 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV-RKFMNSK 531 (571)
Q Consensus 483 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 531 (571)
++++|+..|+++++++|+++.+|..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887765 5776654
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.98 E-value=4e-09 Score=86.48 Aligned_cols=97 Identities=11% Similarity=0.004 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276 436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513 (571)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 513 (571)
...+..+...+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..|+++++++|+++.+|..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 356777788888888888888888887 4455 67788888888888999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 008276 514 KAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 514 ~~g~~~~A~~~~~~m~~~~ 532 (571)
..|++++|...|++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999988887654
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.97 E-value=4.3e-09 Score=89.52 Aligned_cols=157 Identities=9% Similarity=0.018 Sum_probs=99.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H
Q 008276 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL-L 446 (571)
Q Consensus 369 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 446 (571)
..+...+...|++++|+..|++..+ ..| +...+..+...+...|++++|...++.+.... |+...+..+... +
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHH
Confidence 3344455566666666666666554 233 33455566666666666666666666655431 233222222111 1
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCCHHHHH
Q 008276 447 GRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ--SGYYVLLSNIYAKAGRWGDVK 522 (571)
Q Consensus 447 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 522 (571)
...+...+|...+++. ...| +...+..+...+...|++++|+..|+++++.+|+. ...+..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1222223356666655 3455 57788888888889999999999999999988764 558889999999999999999
Q ss_pred HHHHHHHh
Q 008276 523 RVRKFMNS 530 (571)
Q Consensus 523 ~~~~~m~~ 530 (571)
..+++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887653
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.97 E-value=6.1e-09 Score=82.75 Aligned_cols=108 Identities=7% Similarity=-0.049 Sum_probs=74.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 008276 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACC 479 (571)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 479 (571)
.+......+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 5556666677777777777777776653 2345566667777777777777777777765 3344 4666777777777
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 008276 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511 (571)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 511 (571)
..|++++|+..|+++++++|++..++..+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 77777777777777777777777777666554
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=2e-08 Score=87.98 Aligned_cols=128 Identities=9% Similarity=0.035 Sum_probs=98.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 008276 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG 447 (571)
Q Consensus 369 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (571)
..+...|.+.|++++|+..|++..+ ..| +...+..+...+...|++++|...|+++.+. .+.+...+..+..+|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 4488889999999999999999998 455 5668888999999999999999999999874 2445678888888887
Q ss_pred hcCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276 448 RAGK--VEEAYDLIKQMPMEPNE--RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501 (571)
Q Consensus 448 ~~g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 501 (571)
..|. .+.+...+++.. .|++ ..+.....++...|++++|+..|++++++.|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6654 445566666662 3443 344445566677899999999999999999963
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=3.5e-08 Score=103.00 Aligned_cols=188 Identities=14% Similarity=0.038 Sum_probs=140.2
Q ss_pred ccCCchHHHHHHHHHHH--------HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhc
Q 008276 310 GDLSALLLGRKIHRYVE--------RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMS 378 (571)
Q Consensus 310 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 378 (571)
...|++++|.+.++.+. +.. +.+...+..+..+|...|++++|...|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788899998888887 433 45567777888888999999999999988774 4667888888899999
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008276 379 GQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457 (571)
Q Consensus 379 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 457 (571)
|++++|++.|++..+ ..| +...+..+..++...|++++ ...|+++.+. .+.+...|..+..++.+.|++++|++
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999888 445 45678888888999999999 9999988874 24456788889999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhhCCCCch
Q 008276 458 LIKQM-PMEPN-ERIWGSLVAACCLYSN-----MDIGILAADHIFHLAPNQSG 503 (571)
Q Consensus 458 ~~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~ 503 (571)
.|+++ ...|+ ...|..+..++...++ .+...+..+......+.++.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 99988 66775 5567777777766555 23333334444444444433
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=1.9e-08 Score=103.12 Aligned_cols=146 Identities=12% Similarity=-0.021 Sum_probs=90.2
Q ss_pred CCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 008276 312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALF 388 (571)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 388 (571)
.|++++|...++++.+.. +.+...+..+...|...|++++|.+.+++..+ .+...|..+...|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356777777777776654 34556677777777777788888777777654 34566777777777778888888877
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 008276 389 SKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA---GKVEEAYDLIKQM 462 (571)
Q Consensus 389 ~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 462 (571)
++..+. .| +...+..+..++...|++++|.+.+++..+. .+.+...+..+..++... |+.++|.+.+++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 777773 33 4556777777777777888888777777664 233456677777777777 7777777777766
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.91 E-value=2.7e-08 Score=87.06 Aligned_cols=159 Identities=11% Similarity=0.025 Sum_probs=118.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHhhcCCCHHHHHHHHHHHHHhcC
Q 008276 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDS-IAFVS----------------VLSACSHAGLLEEGRYYFKIMTEQYK 431 (571)
Q Consensus 369 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~ 431 (571)
......+...|++++|+..|++..+ ..|+. ..|.. +..++...|++++|...|++..+.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 3344556677788888888877777 44543 34555 888899999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCCchhHHH
Q 008276 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSN--MDIGILAADHIFHLAPNQSGYYVL 507 (571)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~ 507 (571)
.+.+...+..+..++...|++++|+..|+++ ...| +..+|..+...+...|+ .+.+...++++....| ....+..
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHH
Confidence 3456788999999999999999999999988 5566 67788888888766554 4456666666553322 2235667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 508 LSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 508 l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
.+.++...|++++|+..+++..+..
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC
Confidence 7888889999999999999987654
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.90 E-value=2.4e-07 Score=85.17 Aligned_cols=230 Identities=9% Similarity=-0.010 Sum_probs=131.3
Q ss_pred HHcCCc-hHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC--chHHHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc
Q 008276 275 ANNSMP-AEAVDLYLQMEVHGIEPNAISVASVLPACGDLS--ALLLGRKIHRYVERKKLQPNLRLENALVDMY----AKC 347 (571)
Q Consensus 275 ~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 347 (571)
.+.|.+ ++|++++++++..+ +-+...++.--..+...+ +++++...++.+...+ +-+..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 344444 57888888887743 223445555555566666 7888888888877765 33444554333333 333
Q ss_pred ---CCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC----
Q 008276 348 ---GSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGY--DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL---- 415 (571)
Q Consensus 348 ---~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~---- 415 (571)
++++++..+++.+.+ .+...|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchh
Confidence 566666666666653 35555666555566666666 66666666666422 244455555445555554
Q ss_pred --HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHH
Q 008276 416 --LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE-AYDLIKQM-PM----EPNERIWGSLVAACCLYSNMDIG 487 (571)
Q Consensus 416 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~A 487 (571)
++++++.++.+... .+-|...|+.+...+.+.|+..+ +.++..++ .. ..++..+..++..+.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 66666666666553 23455556666666666655333 33445544 11 12455566666666666666666
Q ss_pred HHHHHHHHh-hCCCCchhHHHHH
Q 008276 488 ILAADHIFH-LAPNQSGYYVLLS 509 (571)
Q Consensus 488 ~~~~~~~~~-~~p~~~~~~~~l~ 509 (571)
+++++.+.+ .+|.....|...+
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHH
Confidence 666666664 5666555555443
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=8.9e-09 Score=96.35 Aligned_cols=197 Identities=8% Similarity=-0.038 Sum_probs=148.8
Q ss_pred cCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 008276 311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK 390 (571)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 390 (571)
..|++++|.+++++..+.... . + +...++++.|...|.. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 357788899999888764311 1 0 1114788888887765 45678889999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 008276 391 MLMS----GLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQ 461 (571)
Q Consensus 391 m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (571)
..+. |-.+. ..+|..+...|...|++++|...|++..+.+.-..+ ..++..+..+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7663 11111 347888889999999999999999988764221212 3567888899988 999999999987
Q ss_pred C-CCC-----C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276 462 M-PME-----P--NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS------GYYVLLSNIYAKAGRWGDVKRVRKF 527 (571)
Q Consensus 462 ~-~~~-----p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 527 (571)
. .+. + ...++..+...+...|++++|+..|++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 111 1 145788889999999999999999999999765433 3677778888889999999999999
Q ss_pred HH
Q 008276 528 MN 529 (571)
Q Consensus 528 m~ 529 (571)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.90 E-value=1.2e-08 Score=80.94 Aligned_cols=101 Identities=11% Similarity=0.117 Sum_probs=90.7
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 008276 432 LVPRI-EHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508 (571)
Q Consensus 432 ~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 508 (571)
+.|+. ..+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34443 56778899999999999999999987 5555 788999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 509 SNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 509 ~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
+.+|...|++++|.+.+++..+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999988654
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=5.2e-07 Score=83.66 Aligned_cols=160 Identities=10% Similarity=-0.001 Sum_probs=120.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHH
Q 008276 370 SMISAYGMSGQGYDAVALFSKMLMSGL-CPDSI----AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFA 440 (571)
Q Consensus 370 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 440 (571)
..+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...++++.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999998887421 22211 2334666677788999999999998874222233 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-----C--CC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhH
Q 008276 441 CLVDLLGRAGKVEEAYDLIKQM-----P--ME-P-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ------SGYY 505 (571)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~-----~--~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 505 (571)
.+...|...|++++|...++++ . .. + ...++..+...|...|++++|+..+++++++.+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999999888876 1 11 1 23477888899999999999999999998865322 5689
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHH
Q 008276 506 VLLSNIYAKAGR-WGDVKRVRKFMN 529 (571)
Q Consensus 506 ~~l~~~~~~~g~-~~~A~~~~~~m~ 529 (571)
..++.+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999995 699999988876
No 114
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.87 E-value=5.7e-09 Score=85.68 Aligned_cols=91 Identities=11% Similarity=0.089 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276 439 FACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516 (571)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 516 (571)
+..+...+...|++++|...|+++ ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|...|
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 333444444444444444444443 2222 34444444444444444444444444444444444444444444444444
Q ss_pred CHHHHHHHHHHHH
Q 008276 517 RWGDVKRVRKFMN 529 (571)
Q Consensus 517 ~~~~A~~~~~~m~ 529 (571)
++++|...+++..
T Consensus 104 ~~~~A~~~~~~al 116 (148)
T 2vgx_A 104 ELAEAESGLFLAQ 116 (148)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444443
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.87 E-value=4.4e-07 Score=90.31 Aligned_cols=376 Identities=8% Similarity=-0.064 Sum_probs=195.6
Q ss_pred hCC-ChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC--CChhhHHHHHHHHHHcCC-hhHHH
Q 008276 40 KYP-DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--KNVVFFNVLIRSYVNNYL-YYDAL 115 (571)
Q Consensus 40 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~-~~~A~ 115 (571)
+.| +++.|+.+|+... ..- |. |+++.+..+|++... |+...|...+....+.+. .+...
T Consensus 6 ~~~~~i~~aR~vyer~l-~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHAR-RLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp ------CCHHHHHHHHH-HHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTH
T ss_pred HcCcchHHHHHHHHHHH-HHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHH
Confidence 446 3777888888776 322 11 788888888887654 777788887777776663 34456
Q ss_pred HHHHHHHhC-CCCC-CcccHHHHHHHhhc----CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHc
Q 008276 116 HVYKNMSVH-GFDP-DCYTYPCVLKACSG----SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189 (571)
Q Consensus 116 ~~~~~m~~~-g~~p-~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 189 (571)
.+|+..... |..| +...|...+.-+.. .++.+.+..+|+..+......-...|......-. ......+..++
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~- 146 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKIV- 146 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHHH-
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHHH-
Confidence 677766553 3222 44555555554432 2456667777777765211111112221111111 11111122111
Q ss_pred cCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHH
Q 008276 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNV 269 (571)
Q Consensus 190 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 269 (571)
.-.. +.+..|..+++.+... +.. .+...|..
T Consensus 147 --------------~~~~--~~y~~ar~~y~~~~~~------------------------------~~~---~s~~~W~~ 177 (493)
T 2uy1_A 147 --------------GDTL--PIFQSSFQRYQQIQPL------------------------------IRG---WSVKNAAR 177 (493)
T ss_dssp --------------HHHH--HHHHHHHHHHHHHHHH------------------------------HHT---CSHHHHHH
T ss_pred --------------HHHh--HHHHHHHHHHHHHHHH------------------------------Hhh---ccHHHHHH
Confidence 1110 1233344444333210 000 01122322
Q ss_pred HHHHHHHcC-------CchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 008276 270 MIAVYANNS-------MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD 342 (571)
Q Consensus 270 l~~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 342 (571)
.+..-...+ ..+++..+|++++... +-+...|...+.-+...|+.+.|..+++..... +.+...+..
T Consensus 178 y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~--- 251 (493)
T 2uy1_A 178 LIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY--- 251 (493)
T ss_dssp HHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH---
T ss_pred HHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH---
Confidence 222211110 0234556666666542 334556666666666677777777777777766 333332221
Q ss_pred HHHhcCCHHHH-HHHHhhCC------------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276 343 MYAKCGSLTEA-RTVFDQMR------------CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA 409 (571)
Q Consensus 343 ~~~~~~~~~~a-~~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 409 (571)
|....+.++. ..+.+... ......|...+....+.++.+.|..+|+++ .. ...+...|...+..
T Consensus 252 -y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~l 328 (493)
T 2uy1_A 252 -YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFI 328 (493)
T ss_dssp -HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHH
T ss_pred -HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHH
Confidence 2111111111 11111110 011234666666666777888898998888 32 12344444332222
Q ss_pred hhc-CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008276 410 CSH-AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI 488 (571)
Q Consensus 410 ~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 488 (571)
-.. .++.+.|..+|+...+.+ +.++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+.
T Consensus 329 E~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 329 EYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHH
Confidence 122 236888999998888753 2334556667777788888899999998872 35667777777777788888888
Q ss_pred HHHHHHHh
Q 008276 489 LAADHIFH 496 (571)
Q Consensus 489 ~~~~~~~~ 496 (571)
.+++++.+
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887765
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.86 E-value=6.6e-08 Score=84.94 Aligned_cols=128 Identities=9% Similarity=-0.107 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008276 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446 (571)
Q Consensus 367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (571)
.+..+...+...|++++|+..|++. +.|+...+..+...+...|++++|...+++..+. .+.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 3555666777888888888888766 3557777777888888888888888888887764 244556777778888
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276 447 GRAGKVEEAYDLIKQM-PMEP-----------------NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500 (571)
Q Consensus 447 ~~~g~~~~A~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 500 (571)
...|++++|.+.|++. ...| ....+..+..++...|++++|...++++.+..|.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 8888888888887766 2222 1256677777777788888888888888777764
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.86 E-value=1.7e-06 Score=79.59 Aligned_cols=213 Identities=11% Similarity=0.081 Sum_probs=170.2
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhhCCC---CChhHHHHHHHHH----Hhc---CCh
Q 008276 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG--SLTEARTVFDQMRC---QDVVSWTSMISAY----GMS---GQG 381 (571)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~li~~~----~~~---~~~ 381 (571)
..++|...++.++..+ +-+..+++.--.++...+ +++++++.++.+.. .+...|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3467888888888876 455667787777888888 99999999999875 3555676655555 455 789
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC------HH
Q 008276 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE--EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK------VE 453 (571)
Q Consensus 382 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 453 (571)
++++++++++.+.. +-|..+|+.-.-.+...|.++ +++++++++.+. .+-|...|+....++.+.|+ ++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 99999999999852 336678877777777788888 999999999985 34577788877777777776 89
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhC---CCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276 454 EAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDI-GILAADHIFHLA---PNQSGYYVLLSNIYAKAGRWGDVKRVRKF 527 (571)
Q Consensus 454 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 527 (571)
++++.++++ ...| |...|+.+...+.+.|+... ...+.+++.+++ |.++.++..++.+|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999877 4456 88899998888888887544 666888777776 88899999999999999999999999999
Q ss_pred HHh
Q 008276 528 MNS 530 (571)
Q Consensus 528 m~~ 530 (571)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=3.5e-08 Score=83.74 Aligned_cols=156 Identities=10% Similarity=-0.048 Sum_probs=114.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhc
Q 008276 337 ENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA-CSH 412 (571)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~ 412 (571)
+..+...+...|++++|...|+...+ .+...+..+...+...|++++|+..+++..+. .|+...+...... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34556677888999999999988875 45677888888889999999999999887763 3444333222211 112
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 008276 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN---ERIWGSLVAACCLYSNMDIGI 488 (571)
Q Consensus 413 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~ 488 (571)
.+....|...+++..+. .+.+...+..+..++...|++++|...|+++ ...|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233467888887764 2345678888899999999999999999887 55554 457888888899999999999
Q ss_pred HHHHHHHh
Q 008276 489 LAADHIFH 496 (571)
Q Consensus 489 ~~~~~~~~ 496 (571)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 119
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.86 E-value=4.6e-08 Score=86.81 Aligned_cols=187 Identities=9% Similarity=-0.057 Sum_probs=105.0
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChh----HHHHHH
Q 008276 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQP--NLRLENALVDMYAKCGSLTEARTVFDQMRC--QDVV----SWTSMI 372 (571)
Q Consensus 301 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~li 372 (571)
.+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|+.+.+ |+.. .+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34444555666677777777777766643211 123455556666666666666666666543 2211 233333
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHH---------------
Q 008276 373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE--------------- 437 (571)
Q Consensus 373 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------------- 437 (571)
.++...+.. .+ ..|..+...+...|++++|...|+++.+.+.-.+...
T Consensus 86 ~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 86 LTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp HHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence 333331100 00 0000111111224455555555555554321111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 008276 438 HFACLVDLLGRAGKVEEAYDLIKQM-PMEPN----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY 504 (571)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 504 (571)
....+...|.+.|++++|+..|+++ ...|+ ...+..+..++.+.|+.++|+..++++....|++...
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 1134677888999999999999987 33443 2567888899999999999999999999888876543
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.83 E-value=1.2e-07 Score=87.99 Aligned_cols=162 Identities=9% Similarity=-0.036 Sum_probs=111.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCC--CCC--HHH
Q 008276 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS-----IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL--VPR--IEH 438 (571)
Q Consensus 368 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~~ 438 (571)
+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++..+.... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344556677788888888888877764222111 12334555567778888888888887643111 111 347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------Cch
Q 008276 439 FACLVDLLGRAGKVEEAYDLIKQM----PMEPN-----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPN------QSG 503 (571)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~ 503 (571)
++.+...|...|++++|...++++ ...|+ ..++..+...|...|++++|+..++++++..+. -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 778888888888888888888765 11222 257778888888999999999999988876421 155
Q ss_pred hHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 008276 504 YYVLLSNIYAKAGRWGDV-KRVRKFMN 529 (571)
Q Consensus 504 ~~~~l~~~~~~~g~~~~A-~~~~~~m~ 529 (571)
+|..++.+|.+.|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 788889999999999999 77676654
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.83 E-value=9.4e-08 Score=80.00 Aligned_cols=126 Identities=6% Similarity=-0.033 Sum_probs=100.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 008276 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACC 479 (571)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 479 (571)
.+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|.+.+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4566667777788888888888887764 2345677778888888888888888888876 3334 6778888888999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH--HHhcCCHHHHHHHHHHHH
Q 008276 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNI--YAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~ 529 (571)
..|++++|...++++.+..|.+...+..+..+ +...|++++|...++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999999999998888555554 788899999999988765
No 122
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=2.1e-07 Score=85.88 Aligned_cols=161 Identities=9% Similarity=-0.041 Sum_probs=102.7
Q ss_pred CHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHH-HHHH
Q 008276 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QDVVSWTS-MISA 374 (571)
Q Consensus 298 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~-li~~ 374 (571)
+...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++.+.. |+...... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34445555556666777777777777776664 34556666777777777888888877777764 44332222 2223
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 008276 375 YGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE 453 (571)
Q Consensus 375 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (571)
+...++.++|+..+++..+. .| +...+..+...+...|++++|...|.++.+...-..+...+..++..|...|+.+
T Consensus 195 l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 55666677777777777763 34 4556777777777777777777777777765222222556667777777777776
Q ss_pred HHHHHHHh
Q 008276 454 EAYDLIKQ 461 (571)
Q Consensus 454 ~A~~~~~~ 461 (571)
+|...+++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 66666554
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.77 E-value=1.9e-07 Score=73.66 Aligned_cols=115 Identities=22% Similarity=0.248 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 008276 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAA 477 (571)
Q Consensus 400 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 477 (571)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++ ...| +...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 346667777777888888888888887764 2345667777888888888888888888776 2233 67778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516 (571)
Q Consensus 478 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 516 (571)
+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 899999999999999999999999988888888776654
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.77 E-value=3.4e-08 Score=83.96 Aligned_cols=126 Identities=8% Similarity=0.043 Sum_probs=72.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCH--
Q 008276 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL-LGRAGKV-- 452 (571)
Q Consensus 376 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 452 (571)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34566666666666666531 2244566666666666677777777776666531 2344555556666 5566666
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 008276 453 EEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY 504 (571)
Q Consensus 453 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 504 (571)
++|...++++ ...| +...+..+...+...|++++|+..++++++..|++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 6666666655 3333 45556666666666666666666666666666665443
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=4.8e-07 Score=79.33 Aligned_cols=131 Identities=9% Similarity=-0.035 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCH
Q 008276 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL 416 (571)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~ 416 (571)
+..+...+...|++++|...|++...++...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44566777888888888888888887888888888888888888888888888888742 23556788888888888888
Q ss_pred HHHHHHHHHHHHhcCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 008276 417 EEGRYYFKIMTEQYKLVP--------------RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNE 468 (571)
Q Consensus 417 ~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 468 (571)
++|...|++..+...-.+ ....+..+..++...|++++|.+.|+++ ...|+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888888888877422111 1267778888888888888888888877 555643
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.76 E-value=1.3e-07 Score=75.26 Aligned_cols=117 Identities=11% Similarity=0.058 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 008276 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAA 477 (571)
Q Consensus 400 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 477 (571)
...+..+...+...|++++|...++++... .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 346666777777888888888888887764 2345677778888888888888888888876 3334 57788888889
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH
Q 008276 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518 (571)
Q Consensus 478 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 518 (571)
+...|++++|...++++.+..|.++..+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999888875
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.75 E-value=8.4e-08 Score=90.80 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276 436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513 (571)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 513 (571)
...|..+..+|.+.|++++|+..++++ ...| +...|..+..++...|++++|+..|+++++++|++..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467788888899999999999998887 4445 67888999999999999999999999999999999999999999999
Q ss_pred hcCCHHHH-HHHHHHHH
Q 008276 514 KAGRWGDV-KRVRKFMN 529 (571)
Q Consensus 514 ~~g~~~~A-~~~~~~m~ 529 (571)
+.|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44666664
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.75 E-value=7.5e-08 Score=78.36 Aligned_cols=103 Identities=14% Similarity=-0.029 Sum_probs=52.0
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 008276 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACC 479 (571)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 479 (571)
.+..+...+...|++++|...|+.+... .+.+...|..+..+|...|++++|+..|++. ...| ++..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444444555555555555555555542 1233444555555555555555555555554 2223 3344444555555
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHH
Q 008276 480 LYSNMDIGILAADHIFHLAPNQSGYYV 506 (571)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~p~~~~~~~ 506 (571)
..|++++|+..|++++++.|+++....
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 555555555555555555555444433
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.75 E-value=1.3e-07 Score=75.67 Aligned_cols=116 Identities=7% Similarity=-0.030 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 008276 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAA 477 (571)
Q Consensus 400 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 477 (571)
...+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|.+.++++ ...| +...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 335556666666666666666666666542 2334556666666666677777777666665 2233 56677777788
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 008276 478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517 (571)
Q Consensus 478 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 517 (571)
+...|++++|+..++++.+.+|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888777664
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.74 E-value=1.3e-07 Score=77.28 Aligned_cols=105 Identities=10% Similarity=0.012 Sum_probs=89.3
Q ss_pred CCCCH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 008276 396 LCPDS-IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWG 472 (571)
Q Consensus 396 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 472 (571)
+.|+. ..+..+...+...|++++|...|+++.+. .+.+...|..+..+|...|++++|++.|+++ .+.| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 44543 37778888899999999999999999874 3456788999999999999999999999988 5555 577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 008276 473 SLVAACCLYSNMDIGILAADHIFHLAPNQS 502 (571)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 502 (571)
.+..++...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999998754
No 131
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.73 E-value=2.2e-06 Score=75.02 Aligned_cols=158 Identities=8% Similarity=-0.015 Sum_probs=124.1
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC----chHHHHHHHHHHHHcCCCCChhHHH
Q 008276 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS----ALLLGRKIHRYVERKKLQPNLRLEN 338 (571)
Q Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (571)
++.++..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|...|+...+.+ +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56778888889999999999999999998865 55667777777777 6 8999999999998765 456667
Q ss_pred HHHHHHHh----cCCHHHHHHHHhhCCCC-C----hhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008276 339 ALVDMYAK----CGSLTEARTVFDQMRCQ-D----VVSWTSMISAYGM----SGQGYDAVALFSKMLMSGLCPDSIAFVS 405 (571)
Q Consensus 339 ~l~~~~~~----~~~~~~a~~~~~~~~~~-~----~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 405 (571)
.|...|.. .+++++|..+|+...+. + +..+..|...|.. .+++++|+.+|++..+. ..+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 77777776 78899999999888763 2 5778888888888 78899999999998885 234445666
Q ss_pred HHHHhhcC------CCHHHHHHHHHHHHHh
Q 008276 406 VLSACSHA------GLLEEGRYYFKIMTEQ 429 (571)
Q Consensus 406 l~~~~~~~------~~~~~a~~~~~~~~~~ 429 (571)
|...|... .++++|..+|+...+.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 66666542 2889999999888775
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.73 E-value=4.7e-08 Score=80.10 Aligned_cols=118 Identities=12% Similarity=-0.002 Sum_probs=93.3
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 008276 387 LFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PM 464 (571)
Q Consensus 387 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 464 (571)
.|+++.+ +.|+ ...+..+...+...|++++|...|+.+... .+.+...|..+..++...|++++|++.|+++ ..
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3445444 4453 346777788888999999999999998874 3456778888999999999999999999887 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 008276 465 EP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508 (571)
Q Consensus 465 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 508 (571)
.| +...|..+..++...|++++|+..|++++++.|+++......
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 45 567888889999999999999999999999999887664433
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.73 E-value=8.6e-08 Score=76.11 Aligned_cols=91 Identities=11% Similarity=0.034 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276 439 FACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516 (571)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 516 (571)
+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.++...|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 334444444455555555544444 2222 34444455555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHH
Q 008276 517 RWGDVKRVRKFMN 529 (571)
Q Consensus 517 ~~~~A~~~~~~m~ 529 (571)
++++|...+++..
T Consensus 87 ~~~~A~~~~~~al 99 (126)
T 3upv_A 87 EYASALETLDAAR 99 (126)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555444
No 134
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.70 E-value=2.6e-06 Score=84.74 Aligned_cols=337 Identities=8% Similarity=-0.033 Sum_probs=189.6
Q ss_pred CCHHHHHHHHccCCC--CCchhHHHHHHHHHhCCC-chHHHHHHHHHHHC-CCCC-CHHHHHHHHHHhcCCC--CccHHH
Q 008276 179 GCLKEARRVLNDMPS--KDVVTWNSMVAGYAQNGR-FDEALDVCREMESL-RIKP-DADTMASLLPSVTNTS--PENVLS 251 (571)
Q Consensus 179 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-g~~p-~~~t~~~ll~~~~~~~--~~~~~~ 251 (571)
|+++.+..+|++... |++..|...+....+.++ .+....+|+..... |..| +...|...+.-+.... ...++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 566666666666554 566666666655555442 34556667766653 4333 5566666665543321 223677
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHH---c--------------CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC--
Q 008276 252 VKEMFLKLDNKNLVSWNVMIAVYAN---N--------------SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL-- 312 (571)
Q Consensus 252 a~~~~~~~~~~~~~~~~~l~~~~~~---~--------------g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-- 312 (571)
++.+|++....-...+..+-..|.. . +.+..|..+++++...-...+...|...+.--...
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 8888877753111111222222211 1 12223344444433210001223444443332111
Q ss_pred C--c---hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChh-HHHHHHHHHHhcCChHHHH
Q 008276 313 S--A---LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-QDVV-SWTSMISAYGMSGQGYDAV 385 (571)
Q Consensus 313 ~--~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~-~~~~li~~~~~~~~~~~a~ 385 (571)
+ + .+.+..+|+.++... +.+...|...+..+.+.|+.+.|..++++... |... .|. .|....+.++.
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~- 261 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV- 261 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH-
T ss_pred cCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH-
Confidence 1 1 344667888877754 55577777777878888899999888886543 3322 222 22222222222
Q ss_pred HHHHHHHHC---------CCCC---CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CH
Q 008276 386 ALFSKMLMS---------GLCP---DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG-KV 452 (571)
Q Consensus 386 ~~~~~m~~~---------g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~ 452 (571)
++.+.+. +..+ ....|...+....+.++.+.|..+|+++ +. . ..+...|...+..-...+ +.
T Consensus 262 --~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~ 336 (493)
T 2uy1_A 262 --YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSR 336 (493)
T ss_dssp --HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCCh
Confidence 2222221 0011 1235666666666678899999999988 43 2 234455544443333334 69
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 453 EEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 453 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
+.|..+|+.. ....++..|...+.-....|+.+.|..+|+++ +.+...|...+..-...|+.+.+..+++++.+
T Consensus 337 ~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 337 ATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999877 22224556677777777899999999999987 34567788888877888999999998888864
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=3.6e-08 Score=90.75 Aligned_cols=189 Identities=11% Similarity=-0.014 Sum_probs=125.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 008276 333 NLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLS 408 (571)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~ 408 (571)
+...+..+...+...|++++|...|+...+ | +...|..+...|.+.|++++|+..+++..+. .| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 344555666777777888888777776653 3 5667788888888888888888888888773 44 4557778888
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008276 409 ACSHAGLLEEGRYYFKIMTEQYKLVP---RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD 485 (571)
Q Consensus 409 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 485 (571)
++...|++++|...|++..+...-.+ ....+..+ ...+...+.. .......++......+ ..+ ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYL-TRL-IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHH-HHH-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHH-HHH-HHHHHH
Confidence 88888899999888888765421111 11112111 1112212221 1112223333333333 222 368999
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 008276 486 IGILAADHIFHLAPNQSGYYVLLSNIYAKA-GRWGDVKRVRKFMNSK 531 (571)
Q Consensus 486 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 531 (571)
+|++.++++.+.+|++......+...+.+. +++++|.++|.+..+.
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999998887777887777776 7899999999988753
No 136
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.68 E-value=8.9e-08 Score=75.31 Aligned_cols=94 Identities=15% Similarity=0.041 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276 439 FACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516 (571)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 516 (571)
+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 456777888999999999999988 4455 78888889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 008276 517 RWGDVKRVRKFMNSKG 532 (571)
Q Consensus 517 ~~~~A~~~~~~m~~~~ 532 (571)
++++|+..+++..+..
T Consensus 100 ~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 100 NANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999987653
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=1.2e-06 Score=81.19 Aligned_cols=164 Identities=10% Similarity=-0.072 Sum_probs=120.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--H
Q 008276 335 RLENALVDMYAKCGSLTEARTVFDQMRC--Q-DV------VSWTSMISAYGMSGQGYDAVALFSKMLMSGL---CPD--S 400 (571)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~ 400 (571)
..+...+..+...|++++|.+.++...+ + .. ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444566778888999999888875432 1 11 2244466667888999999999999886321 112 3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CC------CC-C
Q 008276 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR-----IEHFACLVDLLGRAGKVEEAYDLIKQM-PM------EP-N 467 (571)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~ 467 (571)
.+|+.+...|...|++++|...++++.+.....|+ ..++..+...|...|++++|...+++. .+ .. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888899999999999999999998732111222 257888999999999999999999876 11 11 2
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhC
Q 008276 468 ERIWGSLVAACCLYSNMDIG-ILAADHIFHLA 498 (571)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~ 498 (571)
..+|..+...+...|++++| ...++++..+.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 56788889999999999999 78888887643
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.67 E-value=4.3e-06 Score=77.42 Aligned_cols=204 Identities=9% Similarity=-0.093 Sum_probs=138.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHhhCCC
Q 008276 286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL---ENALVDMYAKCGSLTEARTVFDQMRC 362 (571)
Q Consensus 286 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~ 362 (571)
.+..+......|+..+...+...+.-.-+ .+.......+... +...+..+...|++++|..+++...+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 34444433346777776666665533211 1111111222222 22346678889999999999988654
Q ss_pred --C-Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276 363 --Q-DV------VSWTSMISAYGMSGQGYDAVALFSKMLMSGLC-PD----SIAFVSVLSACSHAGLLEEGRYYFKIMTE 428 (571)
Q Consensus 363 --~-~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 428 (571)
+ +. ..+..+...+...+++++|+..|+++.+.... ++ ..+++.+...|...|++++|..+|+++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 11 12344666777788999999999999884222 22 23688899999999999999999999875
Q ss_pred hc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHH
Q 008276 429 QY----KLVPR-IEHFACLVDLLGRAGKVEEAYDLIKQM-------PMEPN-ERIWGSLVAACCLYSN-MDIGILAADHI 494 (571)
Q Consensus 429 ~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~-~~~A~~~~~~~ 494 (571)
.. +..+. ..++..+...|.+.|++++|.+.+++. +..+. ..+|..+..++...|+ +++|+..++++
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 21 11111 247888999999999999999998876 22222 6688889999999995 69999999998
Q ss_pred HhhC
Q 008276 495 FHLA 498 (571)
Q Consensus 495 ~~~~ 498 (571)
+.+.
T Consensus 264 l~i~ 267 (293)
T 3u3w_A 264 SFFF 267 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8743
No 139
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.65 E-value=9e-08 Score=77.89 Aligned_cols=96 Identities=11% Similarity=0.036 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276 436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513 (571)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 513 (571)
...+..+...+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 355667788888999999999999887 4455 67788888888999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 008276 514 KAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 514 ~~g~~~~A~~~~~~m~~~ 531 (571)
..|++++|...+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999887654
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.64 E-value=1.9e-07 Score=78.14 Aligned_cols=110 Identities=11% Similarity=-0.020 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 008276 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVA 476 (571)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 476 (571)
+...+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..|++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4457888888999999999999999999875 2446788899999999999999999999987 4455 5788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 008276 477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSN 510 (571)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 510 (571)
++...|++++|+..|+++++++|++...|.....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999999999999886655543
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.64 E-value=3.5e-07 Score=73.72 Aligned_cols=94 Identities=7% Similarity=-0.028 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276 436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513 (571)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 513 (571)
...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|+..++++++.+|.++.++..++.+|.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 334444444444444444444444443 2222 33444444444445555555555555555555555555555555555
Q ss_pred hcCCHHHHHHHHHHHH
Q 008276 514 KAGRWGDVKRVRKFMN 529 (571)
Q Consensus 514 ~~g~~~~A~~~~~~m~ 529 (571)
..|++++|...+++..
T Consensus 89 ~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 89 EMESYDEAIANLQRAY 104 (137)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 5555555555554443
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.63 E-value=1.7e-07 Score=84.19 Aligned_cols=124 Identities=7% Similarity=-0.062 Sum_probs=73.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhc
Q 008276 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE----RIWGSLVAACCLY 481 (571)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 481 (571)
+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|++....|+. ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 445556666777777776666532 233324445555666677777777777655222222 2455566666667
Q ss_pred CCHHHHHHHHHHHHhhC--CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 482 SNMDIGILAADHIFHLA--PN-QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 482 g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
|++++|+..|+++.... |. .+......+.++.+.|+.++|..+|+++....
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77777777777665432 33 33456666666777777777777777666544
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.63 E-value=2.9e-07 Score=79.75 Aligned_cols=96 Identities=14% Similarity=-0.001 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 008276 437 EHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK 514 (571)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 514 (571)
..+..+..+|...|++++|+..+++. ...| +...+..+..++...|++++|+..|++++++.|.+..++..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56777888888889999998888877 3344 677888899999999999999999999999999999999999999999
Q ss_pred cCCHHHHH-HHHHHHHhCC
Q 008276 515 AGRWGDVK-RVRKFMNSKG 532 (571)
Q Consensus 515 ~g~~~~A~-~~~~~m~~~~ 532 (571)
.|+.+++. ..++.|...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 98888877 5566665443
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.62 E-value=2.2e-07 Score=71.59 Aligned_cols=98 Identities=11% Similarity=0.117 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHH
Q 008276 436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN--QSGYYVLLSNI 511 (571)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 511 (571)
...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|+..++++.+..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 345566777777888888888888776 3233 5677788888888899999999999999999888 88899999999
Q ss_pred HHhc-CCHHHHHHHHHHHHhCCC
Q 008276 512 YAKA-GRWGDVKRVRKFMNSKGI 533 (571)
Q Consensus 512 ~~~~-g~~~~A~~~~~~m~~~~~ 533 (571)
+... |++++|.+.+++..+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999988876653
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.61 E-value=3.9e-07 Score=72.23 Aligned_cols=111 Identities=8% Similarity=-0.082 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 008276 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAAC 478 (571)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 478 (571)
..+..+...+...|++++|...|++..+. .+.+...|..+..++.+.|++++|+..+++. ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 35666667777888888888888887764 2445677788888888888888888888876 4445 577888888888
Q ss_pred HhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHHHHH
Q 008276 479 CLYSNMDIGILAADHIFHLA------PNQSGYYVLLSNIYA 513 (571)
Q Consensus 479 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 513 (571)
...|++++|+..++++++++ |.+..++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 89999999999999999988 877777777766543
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.60 E-value=5.6e-07 Score=71.87 Aligned_cols=99 Identities=8% Similarity=0.049 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 008276 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511 (571)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 511 (571)
.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|+..++++.+..|.+..++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34577888999999999999999999987 5555 788899999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 008276 512 YAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~~~ 532 (571)
+...|++++|...+++..+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999987653
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.60 E-value=2.9e-07 Score=78.11 Aligned_cols=122 Identities=11% Similarity=0.023 Sum_probs=97.4
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--
Q 008276 410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAA-CCLYSNM-- 484 (571)
Q Consensus 410 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~-- 484 (571)
+...|++++|...++...+. .+.+...+..+...|...|++++|...|+++ ...| +...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888899999888774 2456678888999999999999999999887 3334 66777778888 7788888
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008276 485 DIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533 (571)
Q Consensus 485 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 533 (571)
++|+..++++++.+|.++.++..++.+|...|++++|...+++..+...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999998887653
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=1.3e-06 Score=75.83 Aligned_cols=128 Identities=9% Similarity=0.002 Sum_probs=61.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhcC---CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC-C----H
Q 008276 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYK---LVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM-P---MEP-N----E 468 (571)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p-~----~ 468 (571)
.+..+...+...|++++|...+++..+... ..+ ....+..+...+...|++++|.+.+++. . ..+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 444444455555555555555554433110 111 1233444555555555555555555443 0 011 1 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCc----hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 469 RIWGSLVAACCLYSNMDIGILAADHIFHLA--PNQS----GYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
..+..+...+...|++++|...++++++.. ..++ .++..++.++...|++++|.+.+++..
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 234445555555666666666666655432 1111 124556666666666666666665554
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.59 E-value=2.5e-07 Score=73.47 Aligned_cols=95 Identities=9% Similarity=-0.013 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-------hHHH
Q 008276 437 EHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG-------YYVL 507 (571)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 507 (571)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|.+.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667788888889999999888877 4455 6778888889999999999999999999998876543 6777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 508 LSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 508 l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
++.++...|++++|++.+++..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888888999999999999887653
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=1.1e-06 Score=68.21 Aligned_cols=108 Identities=9% Similarity=0.050 Sum_probs=62.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 008276 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACC 479 (571)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 479 (571)
.+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...+++. ...| +...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4444555555566666666666665543 1234455555556666666666666666554 2223 4555566666666
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 008276 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511 (571)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 511 (571)
..|++++|...++++.+.+|.++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666666665555443
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.58 E-value=1.1e-06 Score=78.90 Aligned_cols=137 Identities=9% Similarity=-0.089 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHH
Q 008276 368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR--IEHFACLVDL 445 (571)
Q Consensus 368 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~ 445 (571)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344566677788888888888777663 354445555556777888888888888755431 1 111 2356778888
Q ss_pred HHhcCCHHHHHHHHHhC--C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 008276 446 LGRAGKVEEAYDLIKQM--P-MEPN--ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509 (571)
Q Consensus 446 ~~~~g~~~~A~~~~~~~--~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 509 (571)
+...|++++|++.|++. + ..|. ...+.....++.+.|+.++|...|+++...+|. ..++..|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 88899999999988887 2 1143 335666777788899999999999999999997 66666653
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.57 E-value=6.5e-07 Score=74.79 Aligned_cols=97 Identities=13% Similarity=0.038 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276 436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513 (571)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 513 (571)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|++..+|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 455666677777777777777777766 3334 56666777777777777777777777777777777777777777777
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 008276 514 KAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 514 ~~g~~~~A~~~~~~m~~~~ 532 (571)
..|++++|...+++..+..
T Consensus 91 ~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC
Confidence 7777777777777766543
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.55 E-value=1.1e-06 Score=68.34 Aligned_cols=98 Identities=12% Similarity=0.135 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276 435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512 (571)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 512 (571)
....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778889999999999999999987 3344 7788889999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 008276 513 AKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~~~ 532 (571)
...|++++|...+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999988664
No 154
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.54 E-value=6.5e-05 Score=69.82 Aligned_cols=231 Identities=9% Similarity=0.010 Sum_probs=145.1
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C-C
Q 008276 273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS-ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC-G-S 349 (571)
Q Consensus 273 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~ 349 (571)
...+.+..++|++++++++..+ +-+...++.--..+...+ .++++..+++.+...+ +-+..+|+.-..++... + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 3344456678999999998754 334455666555566667 5899999999998876 45666777665556555 5 7
Q ss_pred HHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC---
Q 008276 350 LTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGY--------DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL--- 415 (571)
Q Consensus 350 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~--- 415 (571)
++++.++++.+.+ .|...|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 8888888888876 35556666555555555555 8888888888853 2266677777777766665
Q ss_pred ----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHhC-CC------
Q 008276 416 ----LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV--------------------EEAYDLIKQM-PM------ 464 (571)
Q Consensus 416 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~------ 464 (571)
++++++.++++... .+-|...|+.+-..+.+.|+. ....+...++ +.
T Consensus 220 ~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred chHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 67788888777763 345566676666666666543 2233333333 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhCCCCchhHHHH
Q 008276 465 -EPNERIWGSLVAACCLYSNMDIGILAADHIF-HLAPNQSGYYVLL 508 (571)
Q Consensus 465 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l 508 (571)
.+.+..+..++..|...|+.++|.++++.+. +.+|-....|.-.
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 1345556666666666666666666666664 4455555444443
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=1.3e-06 Score=71.24 Aligned_cols=110 Identities=9% Similarity=-0.039 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 008276 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWG 472 (571)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 472 (571)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++. ...| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 3446666666677777777777777776642 344 455666666677777777777766665 3333 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 008276 473 SLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511 (571)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 511 (571)
.+..++...|++++|...++++++.+|++..++..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 666666677777777777777777777666666555544
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=8.8e-07 Score=76.84 Aligned_cols=153 Identities=12% Similarity=-0.015 Sum_probs=97.4
Q ss_pred hcCCHHHHHH---HHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHhhcCCCHH
Q 008276 346 KCGSLTEART---VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM----SGLCP-DSIAFVSVLSACSHAGLLE 417 (571)
Q Consensus 346 ~~~~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~l~~~~~~~~~~~ 417 (571)
..|++++|.+ .+..-.......+..+...+...|++++|...+++..+ .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44332223445666777777777777777777777655 12222 2336667777788888888
Q ss_pred HHHHHHHHHHHhcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCH
Q 008276 418 EGRYYFKIMTEQYKLVP-R----IEHFACLVDLLGRAGKVEEAYDLIKQM----PMEPN----ERIWGSLVAACCLYSNM 484 (571)
Q Consensus 418 ~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~ 484 (571)
+|...+++..+.....+ + ...+..+...+...|++++|...+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888877665311112 2 245677778888888888888887765 11112 23456677778888999
Q ss_pred HHHHHHHHHHHhhC
Q 008276 485 DIGILAADHIFHLA 498 (571)
Q Consensus 485 ~~A~~~~~~~~~~~ 498 (571)
++|...++++.++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888887654
No 157
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.54 E-value=4.8e-07 Score=73.14 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCCCchhH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 470 IWGSLVAACCLYSNMDIGILAADHIFHL-------APNQSGYY----VLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
.|..+..++.+.|++++|+..+++++++ +|++..+| ...+.++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7888888888888888888888888888 89888888 8999999999999999998888764
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.52 E-value=1.3e-06 Score=68.57 Aligned_cols=97 Identities=21% Similarity=0.281 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276 436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513 (571)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 513 (571)
...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|+..++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 467888999999999999999999987 3334 67888999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 008276 514 KAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 514 ~~g~~~~A~~~~~~m~~~~ 532 (571)
..|++++|..+++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987654
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=2e-06 Score=70.13 Aligned_cols=98 Identities=13% Similarity=0.017 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 008276 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL 508 (571)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 508 (571)
.+...+..+...+...|++++|.+.|++. ...|+ ...|..+...+...|++++|+..++++++..|.++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 34566666777777777777777777766 55565 45666666677777777777777777777777777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 008276 509 SNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 509 ~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
+.+|...|++++|...+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777777777776654
No 160
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.51 E-value=2.2e-06 Score=71.40 Aligned_cols=128 Identities=10% Similarity=-0.014 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 008276 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445 (571)
Q Consensus 366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (571)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 346667777888888888888888888742 235667888888888889999999998888774 24456778888888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 008276 446 LGRAGKVEEAYDLIKQM-PMEP-NERIWGSL--VAACCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 446 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 496 (571)
+...|++++|.+.++++ ...| +...+..+ +..+...|++++|+..+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88899999999888877 3334 44455333 3336678888888888887655
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.49 E-value=1e-06 Score=70.92 Aligned_cols=113 Identities=8% Similarity=-0.086 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 008276 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVA 476 (571)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 476 (571)
+...+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 5567777777888888888888888887764 2345677778888888888888888888876 3344 5678888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCC-----CchhHHHHHHHHH
Q 008276 477 ACCLYSNMDIGILAADHIFHLAPN-----QSGYYVLLSNIYA 513 (571)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~ 513 (571)
++...|++++|+..++++++..|+ +..+...+..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999888876 5555555544433
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.49 E-value=1e-05 Score=75.11 Aligned_cols=215 Identities=10% Similarity=0.029 Sum_probs=156.0
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhCCC---CChhHHHHHHHHHHhc-C-ChHHHHH
Q 008276 313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG-SLTEARTVFDQMRC---QDVVSWTSMISAYGMS-G-QGYDAVA 386 (571)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~-~-~~~~a~~ 386 (571)
+..++|.++++.++..+ +-+..+++.--.++...| .+++++.+++.+.. .+...|+.-...+.+. + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 34567888899998876 456667777777777778 59999999998875 4666788877777776 6 8999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH--------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-------
Q 008276 387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLE--------EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK------- 451 (571)
Q Consensus 387 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------- 451 (571)
+++++.+.. +-|...|+.-.-.+...+.++ ++++.++++.+. .+-|...|+....++.+.++
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHH
Confidence 999999853 226667766555555545555 899999999874 35577888888888888776
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhhC------CCCch
Q 008276 452 VEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNM--------------------DIGILAADHIFHLA------PNQSG 503 (571)
Q Consensus 452 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~------p~~~~ 503 (571)
++++++.++++ ...| |...|+.+-..+.+.|+. .....+...+.... +.++.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 68888888776 4456 788888877777776654 22333333332222 46777
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 504 YYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 504 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
+...++.+|...|+.++|.++++.+.++
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 8899999999999999999999998643
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.48 E-value=1.4e-06 Score=86.24 Aligned_cols=96 Identities=15% Similarity=0.112 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276 436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513 (571)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 513 (571)
...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++|+..|+++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467788889999999999999999887 4445 67888999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHH-HHHHHHhC
Q 008276 514 KAGRWGDVKR-VRKFMNSK 531 (571)
Q Consensus 514 ~~g~~~~A~~-~~~~m~~~ 531 (571)
+.|++++|.+ .++.|..+
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999998874 56666544
No 164
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.44 E-value=2.4e-06 Score=67.70 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276 435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512 (571)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 512 (571)
+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|+..++++.+..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4467788889999999999999999987 3344 6788889999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 008276 513 AKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~~~ 532 (571)
...|++++|...+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999987654
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.42 E-value=1.5e-06 Score=69.11 Aligned_cols=105 Identities=10% Similarity=-0.032 Sum_probs=64.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 008276 405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPR-IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN----ERIWGSLVAAC 478 (571)
Q Consensus 405 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~ 478 (571)
.+...+...|++++|...|+.+.+.....+. ...+..+..++...|++++|...|+++ ...|+ ...+..+..++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455566777777777777777664221111 145556667777777777777777665 22332 44566666666
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 008276 479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509 (571)
Q Consensus 479 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 509 (571)
...|++++|...++++++..|+++.......
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 7777777777777777777776655544443
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.41 E-value=7e-07 Score=88.74 Aligned_cols=120 Identities=7% Similarity=-0.036 Sum_probs=97.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 008276 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSN 483 (571)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 483 (571)
+...+...|++++|.+.++++.+. .+.+...+..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344566788999999999988874 2345678888999999999999999999887 4455 67788899999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHH--HHhcCCHHHHHHHHHH
Q 008276 484 MDIGILAADHIFHLAPNQSGYYVLLSNI--YAKAGRWGDVKRVRKF 527 (571)
Q Consensus 484 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 527 (571)
+++|+..++++++..|++..++..++.+ +.+.|++++|++.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999998888 8888999999999873
No 167
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.41 E-value=2.7e-06 Score=80.40 Aligned_cols=128 Identities=9% Similarity=-0.069 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276 365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD----------------SIAFVSVLSACSHAGLLEEGRYYFKIMTE 428 (571)
Q Consensus 365 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 428 (571)
...|..+...+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|...++++.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445677777888888888888888888773 343 36788888888889999999999988887
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 008276 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIG-ILAADHIFH 496 (571)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 496 (571)
. .+.+...+..+..+|...|++++|+..|+++ .+.| +...+..+...+...|+.++| ...|+++..
T Consensus 225 ~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 L--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 2446678888888899999999999988887 4455 567788888888888888888 456666654
No 168
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.38 E-value=4.2e-07 Score=70.97 Aligned_cols=90 Identities=11% Similarity=0.067 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 008276 413 AGLLEEGRYYFKIMTEQYK--LVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGI 488 (571)
Q Consensus 413 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 488 (571)
.|++++|+..|++..+. + .+.+...+..+..+|...|++++|++.|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35555666666655542 1 1122344555555555555555555555554 2223 3445555555555555555555
Q ss_pred HHHHHHHhhCCCCch
Q 008276 489 LAADHIFHLAPNQSG 503 (571)
Q Consensus 489 ~~~~~~~~~~p~~~~ 503 (571)
..++++++..|+++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 555555555555543
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.38 E-value=1.4e-06 Score=72.60 Aligned_cols=111 Identities=12% Similarity=-0.037 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 008276 400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK----------------LVPRIEHFACLVDLLGRAGKVEEAYDLIKQM- 462 (571)
Q Consensus 400 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 462 (571)
...+......+.+.|++++|...|........ .+.+...|..+..+|.+.|++++|+..++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34566777778888888888888888765300 1112245666667777777777777777665
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc-hhHHHHHH
Q 008276 463 PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS-GYYVLLSN 510 (571)
Q Consensus 463 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~ 510 (571)
...| +...|..+..++...|++++|+..|+++++++|+++ .+...+..
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3344 456666667777777777777777777777777666 33444433
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.38 E-value=7.9e-05 Score=68.91 Aligned_cols=162 Identities=7% Similarity=0.023 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 008276 366 VSWTSMISAYGMSG--QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL-LEEGRYYFKIMTEQYKLVPRIEHFACL 442 (571)
Q Consensus 366 ~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l 442 (571)
.+|+.-.-.+...+ .+++++.++.++.+.. +-|...|+.-...+...|. ++++++.++.+.+. .+-|...|+..
T Consensus 109 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R 185 (331)
T 3dss_A 109 GTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYR 185 (331)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHH
T ss_pred HHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 33443333333333 2445555555555421 1133344433333334444 34555555554442 12333334333
Q ss_pred HHHHHhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHH
Q 008276 443 VDLLGRA--------------GKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLY-----------SNMDIGILAADHIF 495 (571)
Q Consensus 443 ~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~ 495 (571)
..++.+. +.++++++.+.+. ...| |...|+-+-..+.+. +.++++++.+++++
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell 265 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ 265 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence 3333332 2344555555444 2233 444454433333332 23556666666666
Q ss_pred hhCCCCchhHHHHHHHHH---hcCCHHHHHHHHHHHHh
Q 008276 496 HLAPNQSGYYVLLSNIYA---KAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 496 ~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~ 530 (571)
+..|++.-.+..++.... ..|..+++...+.++.+
T Consensus 266 e~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 266 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred hhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 666665433333322211 24555566666665554
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=1.9e-06 Score=68.41 Aligned_cols=109 Identities=4% Similarity=-0.054 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC----CCC----HHHHH
Q 008276 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PM----EPN----ERIWG 472 (571)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~ 472 (571)
.+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|...++++ .. .++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4455555566666666666666666553 2334555666666666666666666666655 11 112 55667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276 473 SLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513 (571)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 513 (571)
.+...+...|++++|...++++.+..| ++..+..+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 777778888888888888888888877 5666666655543
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.36 E-value=1.7e-06 Score=67.85 Aligned_cols=98 Identities=12% Similarity=0.053 Sum_probs=66.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 008276 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCL 480 (571)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 480 (571)
+..+...+...|++++|...|+++.+. .+.+...|..+..++...|++++|+..|++. ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344555667777888888887777763 2345667777777777788888888877776 4445 56677777777888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCc
Q 008276 481 YSNMDIGILAADHIFHLAPNQS 502 (571)
Q Consensus 481 ~g~~~~A~~~~~~~~~~~p~~~ 502 (571)
.|++++|+..++++++.+|.+.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888777653
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.36 E-value=9.5e-05 Score=68.36 Aligned_cols=241 Identities=8% Similarity=0.008 Sum_probs=164.8
Q ss_pred hhHHHHHH---HHHHcCCch-HHHHHHHHHHHCCCCCCH-HHHHHHHHHhccCCc----------hHHHHHHHHHHHHcC
Q 008276 265 VSWNVMIA---VYANNSMPA-EAVDLYLQMEVHGIEPNA-ISVASVLPACGDLSA----------LLLGRKIHRYVERKK 329 (571)
Q Consensus 265 ~~~~~l~~---~~~~~g~~~-~A~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~ 329 (571)
..|..+.. ...+.|.++ +|+++++.++.. .|+. ..|+.--..+...+. ++++..+++.+...+
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 34444443 334566665 799999999875 4544 344433222222222 678888888888876
Q ss_pred CCCChhHHHHHHHHHHhcC--CHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHH
Q 008276 330 LQPNLRLENALVDMYAKCG--SLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQ-GYDAVALFSKMLMSGLCPDSIAF 403 (571)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~ 403 (571)
+-+..+|+.-.-++...+ .++++..+++.+.+ .|...|+.-.-.+...|. ++++++.+.++++..+ -|...|
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW 182 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSW 182 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHH
Confidence 557778877666777777 48999999998875 467788887777788888 5899999999998532 255566
Q ss_pred HHHHHHhhcC--------------CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHH
Q 008276 404 VSVLSACSHA--------------GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA-----------GKVEEAYDL 458 (571)
Q Consensus 404 ~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~ 458 (571)
+.....+... +.++++++.++..... .+-|...|+-+-..+.+. +.++++++.
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 6655554433 4578899999988874 355666776555555554 457888888
Q ss_pred HHhC-CCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276 459 IKQM-PMEPNERIWGSLVAA-----CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512 (571)
Q Consensus 459 ~~~~-~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 512 (571)
++++ ...|+. .|..+..+ ....|..++....+.++.+++|....-|.-+...+
T Consensus 261 ~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 261 CKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 8887 556754 34332222 22467888999999999999998888887765543
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.35 E-value=2.9e-06 Score=65.15 Aligned_cols=100 Identities=13% Similarity=0.002 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 008276 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP---NERIWGSLVA 476 (571)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~ 476 (571)
..+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|.+.+++. ...| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 35556666777778888888888777764 2345566777788888888888888888776 3333 4677788888
Q ss_pred HHHhc-CCHHHHHHHHHHHHhhCCCCc
Q 008276 477 ACCLY-SNMDIGILAADHIFHLAPNQS 502 (571)
Q Consensus 477 ~~~~~-g~~~~A~~~~~~~~~~~p~~~ 502 (571)
.+... |++++|++.++++.+..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 888888888888888887654
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.35 E-value=7.7e-06 Score=64.81 Aligned_cols=92 Identities=13% Similarity=0.086 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHHH
Q 008276 441 CLVDLLGRAGKVEEAYDLIKQM-PMEPN-E---RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ---SGYYVLLSNIY 512 (571)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~ 512 (571)
.+...+...|++++|.+.|+++ ...|+ . ..+..+..++...|++++|+..++++++..|++ +.++..++.++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3556666777777777777766 22332 2 356666667777777777777777777777776 56677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 008276 513 AKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~~~ 532 (571)
...|++++|...++++.+..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 77777777777777776543
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.34 E-value=3.8e-06 Score=80.32 Aligned_cols=137 Identities=12% Similarity=0.009 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008276 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446 (571)
Q Consensus 367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (571)
.+..+...+.+.|++++|+..|++.++. .+... ..... +...+ ..+.+...|..+..+|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~~--~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGAK--LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHGG--GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHHH--HHHHHHHHHHHHHHHH
Confidence 4556666666777777777777666551 11100 00000 11100 0112346788899999
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 008276 447 GRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV 524 (571)
Q Consensus 447 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 524 (571)
.+.|++++|++.++++ ...| +...|..+..++...|++++|+..|+++++++|++..++..+..++...++.+++.+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 6666 6788899999999999999999999999999999999999999999999988887654
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=3.2e-06 Score=67.06 Aligned_cols=97 Identities=10% Similarity=0.054 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------chhHH
Q 008276 436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ-------SGYYV 506 (571)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 506 (571)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 356778889999999999999999987 3334 67888899999999999999999999999988766 78899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 507 LLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 507 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
.++.+|...|++++|...+++..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999988754
No 178
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.32 E-value=3.7e-06 Score=77.23 Aligned_cols=112 Identities=8% Similarity=-0.109 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 008276 399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVA 476 (571)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 476 (571)
+...+..+...+...|++++|...|+++.+. .+.+...|..+..+|.+.|++++|...++++ ...| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567788888899999999999999999874 2346788889999999999999999999987 5566 6778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276 477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY 512 (571)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 512 (571)
++...|++++|+..|+++.+++|+++..+...+...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 999999999999999999999987755444343333
No 179
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.31 E-value=3.9e-06 Score=66.45 Aligned_cols=96 Identities=7% Similarity=0.001 Sum_probs=50.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC----C----HHHHHH
Q 008276 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP----N----ERIWGS 473 (571)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~----~~~~~~ 473 (571)
+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|...|++++|++.+++. .+.| + ..+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 334444444455555555555544432 1223344444555555555555555554443 1111 1 124555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276 474 LVAACCLYSNMDIGILAADHIFHLAPN 500 (571)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~~p~ 500 (571)
+..++...|++++|+..|+++++..|+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 666677778888888888887777663
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.31 E-value=1.9e-06 Score=71.70 Aligned_cols=61 Identities=3% Similarity=0.029 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 470 IWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
.|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 4445555555555555555555555555555555555555555555555555555555443
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.30 E-value=1.5e-06 Score=82.13 Aligned_cols=147 Identities=12% Similarity=-0.021 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 008276 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL 445 (571)
Q Consensus 366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (571)
..+..+...+.+.|++++|+..|++..+ ..|+... +...++.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3466666777777888888888888776 3454332 223333333332221 1367778888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH-HhcCCHHHHH
Q 008276 446 LGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY-AKAGRWGDVK 522 (571)
Q Consensus 446 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~ 522 (571)
|.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..|+++++++|++..++..+..+. ...+..+.+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877 4445 6778888888888899999999999998888888888888887774 3456777788
Q ss_pred HHHHHHHhCC
Q 008276 523 RVRKFMNSKG 532 (571)
Q Consensus 523 ~~~~~m~~~~ 532 (571)
..++.|....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888776554
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.30 E-value=4.3e-06 Score=69.19 Aligned_cols=128 Identities=13% Similarity=0.013 Sum_probs=73.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC----CHHH
Q 008276 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM----PMEP----NERI 470 (571)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p----~~~~ 470 (571)
+..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++. ...+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444555555555555444332111111 124455555566666666666655554 0011 1335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCC------CCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 471 WGSLVAACCLYSNMDIGILAADHIFHLAP------NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
+..+...+...|++++|...++++++..+ .....+..++.++...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56666677777888888888877776431 1234677888888888888888888887654
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=1.2e-05 Score=79.11 Aligned_cols=163 Identities=9% Similarity=-0.102 Sum_probs=109.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhhcCCCHHHHHHHHHHHHHhc---CCCCC-HHH
Q 008276 368 WTSMISAYGMSGQGYDAVALFSKMLMSG-LCPDSI----AFVSVLSACSHAGLLEEGRYYFKIMTEQY---KLVPR-IEH 438 (571)
Q Consensus 368 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~ 438 (571)
+..+...|...|++++|.+++..+...- ..++.. ..+.+...+...|+++.+..+++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5667777888888888888887765521 111111 23333344556788888888887765421 22222 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCC----ch
Q 008276 439 FACLVDLLGRAGKVEEAYDLIKQM-------PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLA---PNQ----SG 503 (571)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~----~~ 503 (571)
+..++..|...|++++|..+++++ ..++ ...++..++..|...|++++|...++++.... +.. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 778888888899999998888765 1122 24567778888888999999999998887754 222 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 504 YYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 504 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566777777888999999888777653
No 184
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.28 E-value=9.1e-07 Score=76.56 Aligned_cols=96 Identities=11% Similarity=-0.070 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 008276 437 EHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-N----------------ERIWGSLVAACCLYSNMDIGILAADHIFHLA 498 (571)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 498 (571)
..+..+...+...|++++|.+.|++. ...| + ...|..+..++...|++++|+..++++++.+
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 44556666777777777777777765 2222 1 2678888889999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 499 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
|++..++..++.+|...|++++|...+++..+..
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999987654
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.24 E-value=9.8e-07 Score=68.83 Aligned_cols=83 Identities=10% Similarity=0.034 Sum_probs=58.0
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHH
Q 008276 449 AGKVEEAYDLIKQM-PM---EP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKR 523 (571)
Q Consensus 449 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 523 (571)
.|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56677777777766 43 24 445667777777777888888888888777777777777777777777888888877
Q ss_pred HHHHHHhC
Q 008276 524 VRKFMNSK 531 (571)
Q Consensus 524 ~~~~m~~~ 531 (571)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776654
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.23 E-value=4.3e-05 Score=77.30 Aligned_cols=167 Identities=8% Similarity=-0.026 Sum_probs=131.4
Q ss_pred HHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCC-
Q 008276 350 LTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQ----------GYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAG- 414 (571)
Q Consensus 350 ~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~- 414 (571)
.++|.+.++.+.. | +...|+.--..+...|+ ++++++.++++.+. .| +..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence 4556666666653 3 34456666556655555 89999999999884 44 5668887777788888
Q ss_pred -CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---------
Q 008276 415 -LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG-KVEEAYDLIKQM-PMEP-NERIWGSLVAACCLY--------- 481 (571)
Q Consensus 415 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------- 481 (571)
+++++...++++.+. .+-+...|+....++.+.| .++++++.++++ ...| +..+|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999999885 3456788888888888888 899999999888 6666 788888877776653
Q ss_pred -----CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHH
Q 008276 482 -----SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD 520 (571)
Q Consensus 482 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 520 (571)
+.++++++.+++++..+|.+..+|..+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999888555
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.20 E-value=4.5e-06 Score=78.86 Aligned_cols=150 Identities=12% Similarity=0.017 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 008276 334 LRLENALVDMYAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411 (571)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 411 (571)
...+..+...+.+.|++++|...|+.... |+... +...++.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34566777888899999999999998664 32221 122333344333221 136778888899
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCCHHHHH
Q 008276 412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-ERIWGSLVAA-CCLYSNMDIGI 488 (571)
Q Consensus 412 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~g~~~~A~ 488 (571)
+.|++++|+..+++..+. .+.+...|..+..+|...|++++|...|+++ .+.|+ ...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998874 2446778888999999999999999999988 66664 4455555544 23467788888
Q ss_pred HHHHHHHhhCCCCc
Q 008276 489 LAADHIFHLAPNQS 502 (571)
Q Consensus 489 ~~~~~~~~~~p~~~ 502 (571)
..|++++...|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999998888654
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.20 E-value=1.3e-05 Score=66.27 Aligned_cols=132 Identities=18% Similarity=0.114 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HH
Q 008276 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLC-PD----SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IE 437 (571)
Q Consensus 367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 437 (571)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+.....++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666777777777777666542100 11 125666667777778888888777776543211112 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 008276 438 HFACLVDLLGRAGKVEEAYDLIKQM-------PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLA 498 (571)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 498 (571)
.+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...++++.++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5667777788888888888777765 1111 23456677778888999999999998887754
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.17 E-value=6.4e-07 Score=68.99 Aligned_cols=93 Identities=14% Similarity=0.005 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHH
Q 008276 435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ------SGYYV 506 (571)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 506 (571)
+...+..+...+...|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888888888888888877 3344 67788888889999999999999999999999988 77788
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 008276 507 LLSNIYAKAGRWGDVKRVRKF 527 (571)
Q Consensus 507 ~l~~~~~~~g~~~~A~~~~~~ 527 (571)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877777665543
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.15 E-value=7.4e-06 Score=66.21 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 008276 438 HFACLVDLLGRAGKVEEAYDLIKQM-PM-------EPN-ERIW----GSLVAACCLYSNMDIGILAADHIFHLAPNQSGY 504 (571)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 504 (571)
.|..+..++.+.|++++|+..+++. .+ .|+ ...| .....++...|++++|+..|++++++.|.+..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6667777777777777777666655 34 774 5577 888999999999999999999999999988776
Q ss_pred HHHHHH
Q 008276 505 YVLLSN 510 (571)
Q Consensus 505 ~~~l~~ 510 (571)
+..+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 655533
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.13 E-value=2.2e-05 Score=77.48 Aligned_cols=124 Identities=10% Similarity=0.022 Sum_probs=92.3
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcC--CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 008276 409 ACSHAGLLEEGRYYFKIMTEQYK--LV---PR-IEHFACLVDLLGRAGKVEEAYDLIKQM---------PMEPN-ERIWG 472 (571)
Q Consensus 409 ~~~~~~~~~~a~~~~~~~~~~~~--~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 472 (571)
.+...|++++|..++++..+... +. |+ ..+++.|+.+|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567888888887777654311 11 22 256788888888888888888877765 23343 45688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCchh---HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 473 SLVAACCLYSNMDIGILAADHIFH-----LAPNQSGY---YVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
.|...|...|++++|+.+++++++ ++|+++.+ ...+..++...|++++|..++.++.++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999998876 56777664 4577788889999999999999998754
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.12 E-value=1.5e-05 Score=59.85 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
+...|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667777888888888888888888888888888888888888888888888888888877654
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=6.4e-05 Score=73.83 Aligned_cols=159 Identities=9% Similarity=0.011 Sum_probs=118.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 008276 372 ISAYGMSGQGYDAVALFSKMLMSGLCPD----------------SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR 435 (571)
Q Consensus 372 i~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 435 (571)
...+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+.+..+.+..+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456778899999999988887422211 124777889999999999999999988764333333
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----
Q 008276 436 I----EHFACLVDLLGRAGKVEEAYDLIKQM-------PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLA----- 498 (571)
Q Consensus 436 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 498 (571)
. .+.+.+...+...|+.++|.+++++. +..+ ...++..+...+...|++++|...++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23344455556678999999888765 2233 35677889999999999999999999987642
Q ss_pred -CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 499 -PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 499 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
|....++..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 23345888999999999999999999988764
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.08 E-value=2.4e-05 Score=60.48 Aligned_cols=79 Identities=11% Similarity=-0.026 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 419 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (571)
|...|++..+. .+.+...+..+...|...|++++|+..|++. ...| +...|..+..++...|++++|...|+++++
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555431 2233455555555555566666665555554 2223 344555555555555666666666665555
Q ss_pred hCC
Q 008276 497 LAP 499 (571)
Q Consensus 497 ~~p 499 (571)
..|
T Consensus 82 ~~~ 84 (115)
T 2kat_A 82 AAQ 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 544
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.03 E-value=3.6e-05 Score=56.33 Aligned_cols=81 Identities=23% Similarity=0.298 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276 436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA 513 (571)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 513 (571)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|+..++++.+.+|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777888888888888888776 3334 56778888888888999999999999999999988888888888877
Q ss_pred hcC
Q 008276 514 KAG 516 (571)
Q Consensus 514 ~~g 516 (571)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.02 E-value=4.1e-06 Score=67.57 Aligned_cols=85 Identities=9% Similarity=0.047 Sum_probs=64.6
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 008276 448 RAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSN----------MDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515 (571)
Q Consensus 448 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 515 (571)
+.+.+++|++.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344556666665555 3344 55556555555555544 57999999999999999999999999999987
Q ss_pred C-----------CHHHHHHHHHHHHhCC
Q 008276 516 G-----------RWGDVKRVRKFMNSKG 532 (571)
Q Consensus 516 g-----------~~~~A~~~~~~m~~~~ 532 (571)
| ++++|+..|++..+-.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999988764
No 197
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.99 E-value=3e-05 Score=76.91 Aligned_cols=83 Identities=10% Similarity=0.013 Sum_probs=39.1
Q ss_pred HHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHH
Q 008276 344 YAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEG 419 (571)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a 419 (571)
+.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|++.+++..+. .| +...+..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3344555555555544432 23344445555555555555555555555442 22 233444444445555555555
Q ss_pred HHHHHHHHH
Q 008276 420 RYYFKIMTE 428 (571)
Q Consensus 420 ~~~~~~~~~ 428 (571)
.+.|+++.+
T Consensus 94 ~~~~~~al~ 102 (477)
T 1wao_1 94 LRDYETVVK 102 (477)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.98 E-value=2.5e-05 Score=74.61 Aligned_cols=113 Identities=6% Similarity=-0.052 Sum_probs=84.4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 008276 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP-NERIWGSLVAACC 479 (571)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 479 (571)
..+..+...+.+.|++++|...|+++.+.. +... .....+++. ...| +..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 456666677777777887777777776520 0000 001111111 1233 4568888999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
+.|++++|+..++++++++|++..+|..++.+|...|++++|+..+++..+..
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999987654
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.97 E-value=5.9e-05 Score=74.48 Aligned_cols=125 Identities=9% Similarity=-0.069 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008276 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD----------------SIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429 (571)
Q Consensus 366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 429 (571)
..|..+...+.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..++++.+.
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 35666777777788888888888877763 333 367778888888888888888888888774
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHH
Q 008276 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGIL-AADHI 494 (571)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 494 (571)
.+.+...|..+..+|...|++++|+..|+++ .+.| +...+..+..++.+.++.+++.. .++++
T Consensus 347 --~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 347 --DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2445677888888888888888888888887 5666 45677777777777777776653 34443
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.96 E-value=8.8e-05 Score=75.03 Aligned_cols=151 Identities=9% Similarity=-0.005 Sum_probs=124.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCC----------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008276 378 SGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGL----------LEEGRYYFKIMTEQYKLVPRIEHFACLVDLL 446 (571)
Q Consensus 378 ~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (571)
....++|++.++++.+ +.|+.. .|+.--.++...++ ++++...++.+.+. .+-+..+|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3445688999999999 566544 66666566666666 89999999999884 355678888888889
Q ss_pred HhcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc------
Q 008276 447 GRAG--KVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYS-NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA------ 515 (571)
Q Consensus 447 ~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 515 (571)
.+.| +++++++.++++ ...| +..+|+.-...+.+.| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 779999999998 5455 7889998888888888 899999999999999999999999999998874
Q ss_pred --------CCHHHHHHHHHHHHhCC
Q 008276 516 --------GRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 516 --------g~~~~A~~~~~~m~~~~ 532 (571)
+++++|++++++.....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC
Confidence 56789999988887554
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.93 E-value=8.6e-05 Score=54.44 Aligned_cols=72 Identities=10% Similarity=0.018 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 008276 465 EPNERIWGSLVAACCLYSN---MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP 537 (571)
Q Consensus 465 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 537 (571)
.+++..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+.+|+++.+.... .|
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Cc
Confidence 3477788888888765554 799999999999999999999999999999999999999999999988755 44
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.86 E-value=3.8e-05 Score=61.94 Aligned_cols=108 Identities=12% Similarity=0.115 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-
Q 008276 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK----------VEEAYDLIKQM-PMEP-NERIWGSLVAACCLY- 481 (571)
Q Consensus 415 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~- 481 (571)
.+++|.+.++...+. .+.+...|..+..++...++ +++|+..|++. .+.| +..+|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 445555555555542 12344445545555554443 34666666665 4455 455666677776655
Q ss_pred ----------CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 482 ----------SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 482 ----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
|++++|+..|+++++++|++......+-. .++|.++.-+....
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~-------~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM-------TAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-------HHTHHHHHHHHHHS
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH-------HHhCHhccCccccc
Confidence 58999999999999999988755444432 25555555554433
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.0001 Score=56.19 Aligned_cols=66 Identities=8% Similarity=-0.071 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
+...|..+...+...|++++|+..++++++..|.++.++..++.+|...|++++|+..+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788888999999999999999999999999999999999999999999999999999998664
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.75 E-value=0.00012 Score=56.49 Aligned_cols=75 Identities=11% Similarity=0.060 Sum_probs=44.4
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 455 AYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 455 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
|++.|++. ...| +...|..+...+...|++++|+..++++++.+|.+..+|..++.+|...|++++|...+++..
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444443 3333 455556666666666666666666666666666666666666666666666666666666554
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.67 E-value=0.00022 Score=70.35 Aligned_cols=124 Identities=13% Similarity=0.022 Sum_probs=87.9
Q ss_pred HHHhcCChHHHHHHHHHHHHC---CCCCC---H-HHHHHHHHHhhcCCCHHHHHHHHHHHHHhc----C-CCCCH-HHHH
Q 008276 374 AYGMSGQGYDAVALFSKMLMS---GLCPD---S-IAFVSVLSACSHAGLLEEGRYYFKIMTEQY----K-LVPRI-EHFA 440 (571)
Q Consensus 374 ~~~~~~~~~~a~~~~~~m~~~---g~~p~---~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~-~~~~ 440 (571)
.+...|++++|+.++++.++. -+.|+ . .+++.|...|...|++++|..++++..+.. | ..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888876652 12222 2 378888888889999999988888765421 1 22333 5688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 008276 441 CLVDLLGRAGKVEEAYDLIKQM---------PMEPNE-RIWGSLVAACCLYSNMDIGILAADHIFHL 497 (571)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 497 (571)
.|..+|...|++++|+.++++. +..|+. .+...+..++...+.+++|+.+|.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999888876 223432 24455566677889999999999998763
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.67 E-value=0.0005 Score=54.96 Aligned_cols=109 Identities=9% Similarity=-0.103 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 008276 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR----AGKVEEA 455 (571)
Q Consensus 380 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 455 (571)
++++|+++|++..+.| .|+.. +...|...+.+++|.+.|++..+. .+...+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4566666666666654 22222 444455555556666666655542 234444445555544 4445555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhh
Q 008276 456 YDLIKQMPMEPNERIWGSLVAACCL----YSNMDIGILAADHIFHL 497 (571)
Q Consensus 456 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 497 (571)
.+.|++.-...++..+..|...|.. .++.++|...|+++.+.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5544444111233334444444443 34444444444444443
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.64 E-value=0.00023 Score=51.81 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
+...+..+...+...|++++|+..++++++..|.++.++..++.++...|++++|...+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 355778888889999999999999999999999999999999999999999999999999987654
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.47 E-value=0.0022 Score=51.14 Aligned_cols=112 Identities=8% Similarity=-0.114 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 008276 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL----YSNMDIGIL 489 (571)
Q Consensus 414 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 489 (571)
+++++|.+.|++..+. + .++.. +...|...+.+++|.+.|++.-...+...+..|...|.. .+++++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4678999999998875 4 33333 778888888899999999988323577888888888887 789999999
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 008276 490 AADHIFHLAPNQSGYYVLLSNIYAK----AGRWGDVKRVRKFMNSKGI 533 (571)
Q Consensus 490 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 533 (571)
.|+++.+. .++.++..|+..|.. .+++++|.+++++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999887 467889999999999 8999999999999988774
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.46 E-value=0.0041 Score=57.76 Aligned_cols=138 Identities=14% Similarity=-0.011 Sum_probs=76.3
Q ss_pred CChhHHHHHHHHH--HhcC---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhc----CC----CHHHHHHHHHHHHH
Q 008276 363 QDVVSWTSMISAY--GMSG---QGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSH----AG----LLEEGRYYFKIMTE 428 (571)
Q Consensus 363 ~~~~~~~~li~~~--~~~~---~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~----~~----~~~~a~~~~~~~~~ 428 (571)
.+...|...+++. ...+ ...+|..+|++.++ ..|+.. .|..+..++.. .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 3555565555443 2222 35788899999888 567643 44444333321 00 01111111221111
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 008276 429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS 502 (571)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 502 (571)
....+.+...|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.|+++..++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1122445566666666666667777777777766 3446666666666666677777777777777777777543
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.41 E-value=0.0005 Score=66.56 Aligned_cols=61 Identities=8% Similarity=0.100 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCch---hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 469 RIWGSLVAACCLYSNMDIGILAADHIFH-----LAPNQSG---YYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
.+++.+..+|...|++++|+.+++++++ ++|+++. .++.|+.+|...|++++|..++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4566666667677777777777776665 3344443 46677777777777777777777664
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.40 E-value=6.5e-07 Score=84.17 Aligned_cols=118 Identities=8% Similarity=0.021 Sum_probs=74.2
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhc
Q 008276 63 NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG 142 (571)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 142 (571)
.+.+|..|.++....+++.+|++.|-+ ..|+..|..++....+.|.+++-+..+...++. .-++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHh
Confidence 455677777777777777777665533 335556777777777777777777766655544 2344444567777777
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccC
Q 008276 143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM 191 (571)
Q Consensus 143 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 191 (571)
.++..+.++++. .|+..-...+.+-|...|.++.|.-+|..+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 776655444332 355555556666677777777776666655
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.38 E-value=0.00042 Score=51.74 Aligned_cols=66 Identities=12% Similarity=-0.006 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 008276 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499 (571)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 499 (571)
.+...+..+..+|...|++++|++.|+++ ...| +...|..+..+|...|++++|+..+++++++.|
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 34556667777777777777777777766 3334 455677777777777777777777777776654
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.33 E-value=0.00072 Score=50.17 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 008276 441 CLVDLLGRAGKVEEAYDLIKQM-PMEP-NER-IWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517 (571)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 517 (571)
.....+.+.|++++|.+.++++ ...| +.. .|..+..++...|++++|+..|+++++.+|++..++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 3566778899999999999887 4455 566 88888888999999999999999999999988877633 44
Q ss_pred HHHHHHHHHHH
Q 008276 518 WGDVKRVRKFM 528 (571)
Q Consensus 518 ~~~A~~~~~~m 528 (571)
+.+|...+++.
T Consensus 77 ~~~a~~~~~~~ 87 (99)
T 2kc7_A 77 VMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHHHHH
Confidence 55666665543
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.33 E-value=0.001 Score=49.30 Aligned_cols=53 Identities=8% Similarity=0.057 Sum_probs=27.3
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276 408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIE-HFACLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
..+...|++++|...++++.+. .+.+.. .+..+..+|...|++++|.+.|++.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555542 122334 4555555555555555555555554
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.31 E-value=0.00097 Score=64.69 Aligned_cols=60 Identities=5% Similarity=0.135 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCch---hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 470 IWGSLVAACCLYSNMDIGILAADHIFH-----LAPNQSG---YYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
+++.+..+|...|++++|+.+++++++ .+|+++. .+..|+.+|...|++++|..++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 445555555555555555555555544 2233333 35555666666666666666555544
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.24 E-value=0.027 Score=42.97 Aligned_cols=141 Identities=9% Similarity=0.001 Sum_probs=94.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008276 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454 (571)
Q Consensus 375 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (571)
+.-.|..++..++..+.... .+..-|+-++--....-+-+-..+.++.+-+.+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34456677777777666553 13334444554444445555555555555432221 12444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008276 455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534 (571)
Q Consensus 455 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 534 (571)
...-+-.++ .+....+..+..+...|+-+.-.+++..+....+.++.....++.+|.+.|+..+|.+++++..++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 444444442 244556777888889999999999999887777889999999999999999999999999999999975
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.21 E-value=0.0024 Score=61.86 Aligned_cols=95 Identities=12% Similarity=-0.011 Sum_probs=67.2
Q ss_pred cCCCHHHHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 008276 412 HAGLLEEGRYYFKIMTEQY--KLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM---------PMEPN-ERIWGSLV 475 (571)
Q Consensus 412 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~ 475 (571)
..|++++|..++++..+.. -+.|+ ..+++.+..+|...|++++|+.++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4567788887777765431 12222 256778888888888888888887765 23443 44688888
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----hCCCCchhHH
Q 008276 476 AACCLYSNMDIGILAADHIFH-----LAPNQSGYYV 506 (571)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 506 (571)
..|...|++++|+.+++++++ ++|+++.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 889999999999999998877 4577775544
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.15 E-value=0.0045 Score=60.03 Aligned_cols=101 Identities=12% Similarity=-0.027 Sum_probs=72.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHH
Q 008276 407 LSACSHAGLLEEGRYYFKIMTEQY--KLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM---------PMEPN-ERI 470 (571)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 470 (571)
+..+...|++++|...+++..+.. -+.|+ ..+++.++.+|...|++++|+.+++++ +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888888887776431 12222 256788888888888888888887765 23343 446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCchhHHH
Q 008276 471 WGSLVAACCLYSNMDIGILAADHIFH-----LAPNQSGYYVL 507 (571)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 507 (571)
++.|...|...|++++|+.+++++++ ++|+++.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 78888899999999999999998877 56887765544
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.05 E-value=0.0022 Score=56.99 Aligned_cols=88 Identities=10% Similarity=0.142 Sum_probs=65.1
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhCCCC-chhHHHHHHHHHh-cCCHHH
Q 008276 452 VEEAYDLIKQM-PMEPN---ERIWGSLVAACCL-----YSNMDIGILAADHIFHLAPNQ-SGYYVLLSNIYAK-AGRWGD 520 (571)
Q Consensus 452 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~-~g~~~~ 520 (571)
...|...+++. .+.|+ ...|..+...|.+ .|+.++|.+.|+++++++|+. ..++...+..++. .|+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555666655 55665 4567777777777 488888888888888888864 8888888888877 488888
Q ss_pred HHHHHHHHHhCCCCCCCce
Q 008276 521 VKRVRKFMNSKGIKKMPGA 539 (571)
Q Consensus 521 A~~~~~~m~~~~~~~~~~~ 539 (571)
|.+++++.........|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 8888888887776654553
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.89 E-value=0.0093 Score=55.36 Aligned_cols=133 Identities=14% Similarity=0.050 Sum_probs=92.3
Q ss_pred CCCCHHHHHHHHHHhh--cC---CCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHh---cC-----C---HHHHHHH
Q 008276 396 LCPDSIAFVSVLSACS--HA---GLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGR---AG-----K---VEEAYDL 458 (571)
Q Consensus 396 ~~p~~~~~~~l~~~~~--~~---~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g-----~---~~~A~~~ 458 (571)
.+.+...|...+++.. .. .+..+|..+|+++.+. .|+. ..+..+..+|.- .+ . ...+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 4556667777776643 22 3457899999999875 5553 444444333321 11 1 1122222
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 459 IKQMP-MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 459 ~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
...+. ...++.+|..+...+...|++++|...+++++.++| +...|..++.++.-.|++++|.+.+++....+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 22332 244788888888888888999999999999999996 57788899999999999999999999887654
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.88 E-value=0.0059 Score=44.48 Aligned_cols=68 Identities=16% Similarity=0.095 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276 433 VPRIEHFACLVDLLGRAGK---VEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500 (571)
Q Consensus 433 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 500 (571)
+.++..+..+..++...++ .++|..++++. ...| ++..+..+...+.+.|++++|+..|+++++.+|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566777777777765544 68888888877 5555 5677777788888899999999999999888887
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.80 E-value=0.012 Score=44.03 Aligned_cols=75 Identities=13% Similarity=0.060 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 008276 435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-----P----MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY 505 (571)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 505 (571)
+...+..+...+.+.|+++.|...|+.+ + -.+....+..+..++.+.|+++.|...++++.++.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3344455666666677777766666654 1 123466788899999999999999999999999999998776
Q ss_pred HHHH
Q 008276 506 VLLS 509 (571)
Q Consensus 506 ~~l~ 509 (571)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5553
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.70 E-value=0.097 Score=55.73 Aligned_cols=155 Identities=15% Similarity=0.060 Sum_probs=93.3
Q ss_pred HHHHHcCCchHHHH-HHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 008276 272 AVYANNSMPAEAVD-LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350 (571)
Q Consensus 272 ~~~~~~g~~~~A~~-~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (571)
......+++++|.+ ++.. .++......++..+.+.|..+.|.++.+. +. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCH
Confidence 34456778888876 4411 11122235666666777777777765531 11 112345667889
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008276 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430 (571)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 430 (571)
+.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+...++-+.....
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~- 736 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT- 736 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 99988877764 567888899999999999999988887644 334444455566666555554444332
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276 431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 431 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
+ + ++.-..+|.+.|++++|++++.++
T Consensus 737 ~---~---~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 737 G---K---FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp T---C---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred C---c---hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1 1 122334455566666666665554
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.70 E-value=0.0057 Score=48.66 Aligned_cols=93 Identities=10% Similarity=-0.015 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHH
Q 008276 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG---KVEEAYDLIKQM-PME-P--NERIWGSLVAACCLYSNMDI 486 (571)
Q Consensus 414 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~ 486 (571)
.....+.+.|.+.... + .++..+...+..++++.+ +.++++.+|++. ... | +...+-.+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3456677777776653 3 477788888888999988 666899888887 223 5 34555667777899999999
Q ss_pred HHHHHHHHHhhCCCCchhHHHH
Q 008276 487 GILAADHIFHLAPNQSGYYVLL 508 (571)
Q Consensus 487 A~~~~~~~~~~~p~~~~~~~~l 508 (571)
|.+.++++++.+|++..+....
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999887665543
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.60 E-value=0.012 Score=46.73 Aligned_cols=66 Identities=8% Similarity=0.028 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhC-C-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 466 PNERIWGSLVAACCLYS---NMDIGILAADHIFHLA-P-NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 466 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
++..+...+..++++.+ +.++++.+++.+.+.+ | .+...+..++-+|.+.|++++|+++++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45555555666666655 4446666666666665 4 34556666666666666666666666666543
No 226
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.21 E-value=0.00015 Score=68.50 Aligned_cols=243 Identities=10% Similarity=0.072 Sum_probs=156.2
Q ss_pred cccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC--CChhhHHHHHH
Q 008276 26 YTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--KNVVFFNVLIR 103 (571)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 103 (571)
..+..|..|+++..+.+.+.+|.+.|- +.+ |+..|..++....+.|.+++-.+.+.-..+ +++..=+.|+-
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI----kA~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI----KAD---DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC----CCS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH----hCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 345678889999998898888877665 222 667788999999999999999988876654 46667788999
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhC--------------------CCC
Q 008276 104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG--------------------LDY 163 (571)
Q Consensus 104 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g--------------------~~~ 163 (571)
+|++.++..+-.+++ -.|+..-...+.+-|...|.++.|+-+|..+-... -.-
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998876644332 24666667777777777777777665554321100 023
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHccC-CCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 008276 164 NLFNGNGLVAMYGKCGCLKEARRVLNDM-PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT 242 (571)
Q Consensus 164 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 242 (571)
++.||-.+..+|...+++.-|.-+--.+ ..+| -...++..|-..|.+++-+.+++.-... -......|+.|--.|+
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 4556666666676666665553322111 1111 1122444566677788877777766531 2356667777777787
Q ss_pred CCCCccHHHHHHHHhh-CCC-------CChhhHHHHHHHHHHcCCchHHHH
Q 008276 243 NTSPENVLSVKEMFLK-LDN-------KNLVSWNVMIAVYANNSMPAEAVD 285 (571)
Q Consensus 243 ~~~~~~~~~a~~~~~~-~~~-------~~~~~~~~l~~~~~~~g~~~~A~~ 285 (571)
+-....+-+-.++|.. +.- .....|.-++-.|.+-.+++.|..
T Consensus 275 KY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 7765444443333332 222 244578888888888888887754
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.16 E-value=0.064 Score=57.12 Aligned_cols=130 Identities=11% Similarity=-0.028 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH
Q 008276 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417 (571)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 417 (571)
..++..+.+.|.++.|.++.+. . ..-.......|+++.|.++.+. ..+...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHH
Confidence 5566666777777777766532 1 1112334566777777776533 235667777777777777777
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494 (571)
Q Consensus 418 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (571)
.|.++|.++.. |..+...+...|+.+...++.+......+ ++....++.+.|++++|++++.++
T Consensus 699 ~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~---~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTGK---FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc---hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 77777776632 33455555556666655444433311111 233334455667777777766544
No 228
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.91 E-value=1.7 Score=43.93 Aligned_cols=114 Identities=7% Similarity=-0.063 Sum_probs=64.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008276 379 GQGYDAVALFSKMLMSGLCPDSI----AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE 454 (571)
Q Consensus 379 ~~~~~a~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (571)
.+.+.|...|....... ..+.. ....+.......+...++...+...... ..+.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 36788888887776532 22322 2233333344445345555566554332 2333334444555557788888
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 455 AYDLIKQMPMEP--NERIWGSLVAACCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 455 A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (571)
|...|+.++..+ .....-=+.+++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888884332 222222244566677888888888888764
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.81 E-value=0.053 Score=40.35 Aligned_cols=66 Identities=9% Similarity=-0.076 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLA-------PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
+......+...+...|+++.|..-|+.+++.. +....++..++.+|.+.|++++|..++++..+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 44555678888999999999999999998853 3456789999999999999999999999987643
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.51 E-value=3 Score=43.97 Aligned_cols=149 Identities=10% Similarity=-0.050 Sum_probs=71.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcC
Q 008276 375 YGMSGQGYDAVALFSKMLMSGLCPDSIA--FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAG 450 (571)
Q Consensus 375 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g 450 (571)
+.-.|+.+....++..+.+. . +... ...+.-++...|+.+.+..+.+.+... ..|....- .++.-+|+-.|
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~--~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQET--Q-HGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHC--S-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSC
T ss_pred hcccCCHHHHHHHHHHHhcc--C-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCC
Confidence 33456666666666665553 1 2222 222233344567777777777776542 12222221 12334455666
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH--hcCCH-HHHHHHH
Q 008276 451 KVEEAYDLIKQMPMEPNERIWGSLVA--ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA--KAGRW-GDVKRVR 525 (571)
Q Consensus 451 ~~~~A~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~-~~A~~~~ 525 (571)
+.....+++..+...++...-...+- ++...|+.+.+.++++.+.+.. ++.+....+.++. ..|+. .+|...+
T Consensus 575 n~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 76666667766622333333222222 2333555555555544333322 3344444434333 34443 5677777
Q ss_pred HHHHh
Q 008276 526 KFMNS 530 (571)
Q Consensus 526 ~~m~~ 530 (571)
..+..
T Consensus 653 ~~L~~ 657 (963)
T 4ady_A 653 DPLTK 657 (963)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 77753
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.51 E-value=0.16 Score=38.71 Aligned_cols=92 Identities=10% Similarity=-0.028 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHH
Q 008276 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE---AYDLIKQM-PME-P--NERIWGSLVAACCLYSNMDIG 487 (571)
Q Consensus 415 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A 487 (571)
....+.+.|...... + .++..+-..+..++++.....+ ++.+++++ ... | .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344555555555443 3 2666666667777777776555 67777766 222 3 223344456678899999999
Q ss_pred HHHHHHHHhhCCCCchhHHHH
Q 008276 488 ILAADHIFHLAPNQSGYYVLL 508 (571)
Q Consensus 488 ~~~~~~~~~~~p~~~~~~~~l 508 (571)
.+.++.+++..|.+..+....
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999887765543
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.48 Score=38.66 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=23.6
Q ss_pred HHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccC
Q 008276 35 NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT 91 (571)
Q Consensus 35 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 91 (571)
..+....|+++.|.++...+- +...|..|.......|+++-|.++|....
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~-------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN-------DSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHhcCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 334444555555555443321 34445555555555555555555554433
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.18 E-value=0.084 Score=41.35 Aligned_cols=99 Identities=10% Similarity=0.003 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHhhcCCCH------HHHHHHHHHHHHhcCCCCCHH-HHHHHHHH------HHhcCCHHHHHHHHHhC---
Q 008276 399 DSIAFVSVLSACSHAGLL------EEGRYYFKIMTEQYKLVPRIE-HFACLVDL------LGRAGKVEEAYDLIKQM--- 462 (571)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~--- 462 (571)
|..+|-..+....+.|+. ++..++|++... .++|+.. .|...+.. +...++.++|.++|+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444666666666655666 666666666655 4444421 11111111 12224455555555444
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276 463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500 (571)
Q Consensus 463 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 500 (571)
..+- ...|.....--.+.|+.+.|.+++.+++...|.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 1111 333433333344455555555555555555543
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.16 E-value=1.1 Score=36.64 Aligned_cols=126 Identities=13% Similarity=0.030 Sum_probs=61.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008276 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455 (571)
Q Consensus 376 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (571)
.+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHH
Confidence 3456666666555543 2455666666666666666666666665532 23344444455555544
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276 456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528 (571)
Q Consensus 456 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 528 (571)
.++-+....+- -++.....+...|++++++++|.+.-+ +..-+......|-.+.|.++.+++
T Consensus 80 ~kla~iA~~~g---~~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTRE---DFGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc---cHHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 44433221111 123333444556666666666654322 111111122356666777776655
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.36 Score=49.79 Aligned_cols=54 Identities=9% Similarity=-0.008 Sum_probs=50.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 476 AACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
..|...|+++.|+.+.+++....|.+..+|..|+.+|...|+++.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446678999999999999999999999999999999999999999999999884
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.86 E-value=0.05 Score=48.40 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHh-cCCH
Q 008276 417 EEGRYYFKIMTEQYKLVPR---IEHFACLVDLLGR-----AGKVEEAYDLIKQM-PMEP--NERIWGSLVAACCL-YSNM 484 (571)
Q Consensus 417 ~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~-~g~~ 484 (571)
..|...+++..+. .|+ ...|..+...|.. -|+.++|.+.|++. .+.| +..++..+...++. .|+.
T Consensus 180 ~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4555555555543 444 3456667777766 37777777777776 4455 25566666666666 4778
Q ss_pred HHHHHHHHHHHhhCCC
Q 008276 485 DIGILAADHIFHLAPN 500 (571)
Q Consensus 485 ~~A~~~~~~~~~~~p~ 500 (571)
+++.+.+++++...|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888776654
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.81 E-value=0.1 Score=39.86 Aligned_cols=81 Identities=7% Similarity=-0.037 Sum_probs=62.8
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhC-C-CCchhHHHHHHHHHhcCCHHHHHHH
Q 008276 452 VEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDI---GILAADHIFHLA-P-NQSGYYVLLSNIYAKAGRWGDVKRV 524 (571)
Q Consensus 452 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 524 (571)
+..+.+-+.+. .-.|+..+--.+.+++.+..+... ++.+++.+.+.+ | ........|+-++.+.|++++|+++
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34444444433 124778888888999998887765 999999988877 5 4667888999999999999999999
Q ss_pred HHHHHhCC
Q 008276 525 RKFMNSKG 532 (571)
Q Consensus 525 ~~~m~~~~ 532 (571)
++.+.+..
T Consensus 97 ~~~lL~~e 104 (126)
T 1nzn_A 97 VRGLLQTE 104 (126)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99998654
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.95 E-value=0.72 Score=36.22 Aligned_cols=97 Identities=13% Similarity=0.219 Sum_probs=56.9
Q ss_pred CChhHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHHH---HhhcCCCHHHHHHHHHHHHHh
Q 008276 363 QDVVSWTSMISAYGMSGQG------YDAVALFSKMLMSGLCPDSI----AFVSVLS---ACSHAGLLEEGRYYFKIMTEQ 429 (571)
Q Consensus 363 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~g~~p~~~----~~~~l~~---~~~~~~~~~~a~~~~~~~~~~ 429 (571)
.|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|..+.- .+...++.++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4566677766666666777 6777777776664 555431 1111110 112336777777777777553
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
.-.- ...|....+--.++|++..|.+++.+.
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2122 556666666666777777777777765
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.64 E-value=0.21 Score=47.62 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=26.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276 475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM 528 (571)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 528 (571)
+.++...|++++++..++.+...+|-+...|..++.+|.+.|+..+|++.|+++
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444455555555555555555555445555555555555555555444444
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.54 E-value=8.8 Score=40.58 Aligned_cols=164 Identities=10% Similarity=0.082 Sum_probs=80.6
Q ss_pred hccCCchHHHHHHHHHHHHcCCCCChhHHHHHH--HHHHhcCCHHHHHHHHhhCCC-CChhH-HH---HHHHHHHhcCCh
Q 008276 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALV--DMYAKCGSLTEARTVFDQMRC-QDVVS-WT---SMISAYGMSGQG 381 (571)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~---~li~~~~~~~~~ 381 (571)
+.-.|+.+....++..+.+.. +..+...+. -++...|+.+.+..+++.+.. .+... |. ++.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence 445566666666666665532 222222222 233355666666666555542 23322 22 233456667776
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 008276 382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV-EEAYDLIK 460 (571)
Q Consensus 382 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 460 (571)
.....++..+... ...+......+.-++...|+.+.+.++++.+.+. ..|.+..-..+.-+....|.. .++.+++.
T Consensus 577 ~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 577 SAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 6666677777663 2222223333333444455556666666655542 234443333333334434432 56667777
Q ss_pred hCCCCCCHHHHHHHHHHH
Q 008276 461 QMPMEPNERIWGSLVAAC 478 (571)
Q Consensus 461 ~~~~~p~~~~~~~l~~~~ 478 (571)
.+..++|..+-..-+.++
T Consensus 654 ~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 654 PLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp HHHTCSSHHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHH
Confidence 764455555443333333
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.31 E-value=1.5 Score=34.09 Aligned_cols=74 Identities=11% Similarity=0.063 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 008276 433 VPRIEHFACLVDLLGRAGKVE---EAYDLIKQM-PMEP-N-ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506 (571)
Q Consensus 433 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 506 (571)
.|+..+-..+..++.+....+ +++.+++.+ ...| + -...-.|.-++.+.|++++|.+..+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 466666666677777766543 456666665 2223 2 223334555677788888888888888888887765443
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.88 E-value=0.62 Score=35.69 Aligned_cols=73 Identities=11% Similarity=0.062 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 008276 434 PRIEHFACLVDLLGRAGKV---EEAYDLIKQM-PMEP--NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV 506 (571)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 506 (571)
|+..+--.+..++.+.... .+++.+++++ ...| ....+-.+.-++.+.|++++|.+..+.+++..|++..+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 4444444555556555543 3455555554 2223 2233444555666666666666666666666666655433
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.82 E-value=0.72 Score=36.97 Aligned_cols=124 Identities=14% Similarity=0.084 Sum_probs=63.0
Q ss_pred CCCCCCHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 008276 394 SGLCPDSI--AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI-------EHFACLVDLLGRAGKVEEAYDLIKQM-- 462 (571)
Q Consensus 394 ~g~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-- 462 (571)
.|+.|... ++..-++.+...+.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34445333 33444566677777887777777655432333331 24455667777777777777777664
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 463 --PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 463 --~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
..-+ +......+. . ...... -.. .+.+.+.-..++.+|.+.|++++|+.+++.+.
T Consensus 92 ~~k~l~k~~s~~~~~~-~---~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG-N---SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHCC-------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHhcCCCcccccc-c---cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 1001 111110000 0 000000 000 12334567789999999999999999998654
No 244
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.54 E-value=2.8 Score=32.19 Aligned_cols=138 Identities=9% Similarity=-0.002 Sum_probs=76.1
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 008276 274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353 (571)
Q Consensus 274 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (571)
+.-.|..++..+++.+.... .+..-|+.++--....-+-+-..++++.+-+. .|. ..+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 34456777777777766652 34455555554444444444444444443321 111 122333333
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008276 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429 (571)
Q Consensus 354 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 429 (571)
...+-.+. .+.......++.+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++-++
T Consensus 81 i~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33333322 2233445556667777777777777777433 25667777777777777777777777777777665
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.86 E-value=7.1 Score=35.33 Aligned_cols=113 Identities=8% Similarity=-0.043 Sum_probs=67.5
Q ss_pred HHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHH----HHHHHhCCCCCCcccHHHHHHHhh
Q 008276 66 IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHV----YKNMSVHGFDPDCYTYPCVLKACS 141 (571)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~li~~~~ 141 (571)
.|.++..-|.+.+++++|++++.. -...+.+.|++..|-++ .+.+.+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666777778888888876432 23455666776665554 455566677777777777776655
Q ss_pred cCCC-----hHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhCCCHHHHHHHHc
Q 008276 142 GSNS-----LLVGLQIHCSVVKVGL--DYNLFNGNGLVAMYGKCGCLKEARRVLN 189 (571)
Q Consensus 142 ~~~~-----~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 189 (571)
.... .+-..+...+-.+.|- .-++..+..+...|.+.|++.+|+..|-
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4321 1122222333333321 1256677777777777777777777664
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.60 E-value=5 Score=38.81 Aligned_cols=182 Identities=12% Similarity=0.091 Sum_probs=115.7
Q ss_pred CCHHHHHHHHhhCCC---------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh----hcCC
Q 008276 348 GSLTEARTVFDQMRC---------QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC----SHAG 414 (571)
Q Consensus 348 ~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~----~~~~ 414 (571)
|+++.|.+.+-.+.+ ........++..|...|+++...+.+.-+....-.. ......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 678888877655432 234457778899999999999988887666532222 22223333332 2223
Q ss_pred CHH--HHHHHHHHHHHhc--CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCC---HHHHHHHHHHHH
Q 008276 415 LLE--EGRYYFKIMTEQY--KLVP---RIEHFACLVDLLGRAGKVEEAYDLIKQM-----PMEPN---ERIWGSLVAACC 479 (571)
Q Consensus 415 ~~~--~a~~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~l~~~~~ 479 (571)
..+ .-..+.+.+.... .+-. .......|...+...|++.+|.+++..+ +..+. ...+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 222 2222222221100 1111 1234567889999999999999999987 22221 345666778899
Q ss_pred hcCCHHHHHHHHHHHHh---hCCCCc----hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 480 LYSNMDIGILAADHIFH---LAPNQS----GYYVLLSNIYAKAGRWGDVKRVRKFMNS 530 (571)
Q Consensus 480 ~~g~~~~A~~~~~~~~~---~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 530 (571)
..+|+.+|..++.++.. ..+..+ ..+...+..+...++|.+|-+.|.+..+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999999999998753 123332 3667888888899999999988877753
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.67 E-value=1.4 Score=35.29 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 008276 435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPME 465 (571)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (571)
+.+.-..+..+|.+.|++++|+.+++.++.+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 3444455677777777777887777777433
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.74 E-value=5.9 Score=30.78 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 465 EPNERIWGSLVAACCLYSN---MDIGILAADHIFHLAPN-QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 465 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
.|+..+--.+.+++.+..+ ..+++.+++.+.+..|. .......|+-++.+.|++++|+++.+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4666666666777766554 34677777777777663 45566677778888888888888887777553
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.25 E-value=1.7 Score=31.31 Aligned_cols=63 Identities=10% Similarity=0.210 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444 (571)
Q Consensus 380 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (571)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++++.++.+.+.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 455677777778888889999999999999999999999999999988753333 345655554
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.25 E-value=14 Score=34.86 Aligned_cols=163 Identities=10% Similarity=-0.017 Sum_probs=90.4
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHc-CCCC---ChhHHHHHHHHHHhcC-CHHHHHHHHhhCCC---CChhHH---
Q 008276 300 ISVASVLPACGDLSALLLGRKIHRYVERK-KLQP---NLRLENALVDMYAKCG-SLTEARTVFDQMRC---QDVVSW--- 368 (571)
Q Consensus 300 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~--- 368 (571)
.....+...|.+.|+.++...++...... +.-+ .......+++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777788887777777665431 1111 2233455666665532 33333333333321 111223
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHhhcCCCHHHHHHHHHHHHHhc-CCCCCHHHH
Q 008276 369 ---TSMISAYGMSGQGYDAVALFSKMLMS--GLCPDS---IAFVSVLSACSHAGLLEEGRYYFKIMTEQY-KLVPRIEHF 439 (571)
Q Consensus 369 ---~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 439 (571)
..++..|...|++.+|.+++.++.+. ...... ..+..-++.|...+++..+...+....... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 14677788888888888888777663 111111 245555666777888888888887765432 222333222
Q ss_pred ----HHHHHHHH-hcCCHHHHHHHHHhC
Q 008276 440 ----ACLVDLLG-RAGKVEEAYDLIKQM 462 (571)
Q Consensus 440 ----~~l~~~~~-~~g~~~~A~~~~~~~ 462 (571)
..-...+. ..+++..|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 22233445 677888887777654
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.15 E-value=4.7 Score=28.83 Aligned_cols=88 Identities=13% Similarity=0.057 Sum_probs=64.8
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 008276 142 GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221 (571)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 221 (571)
-....++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++..-+.+
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 45567888888888887663 22222333456788999999999999999999999877655 478888888888888
Q ss_pred HHHCCCCCCHHHH
Q 008276 222 MESLRIKPDADTM 234 (571)
Q Consensus 222 m~~~g~~p~~~t~ 234 (571)
+..+| .|....|
T Consensus 94 la~sg-~p~~q~F 105 (115)
T 2uwj_G 94 LGGSS-DPALADF 105 (115)
T ss_dssp HHTCS-SHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 87765 3443333
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.06 E-value=2.7 Score=32.25 Aligned_cols=67 Identities=12% Similarity=0.053 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 465 EPNERIWGSLVAACCLYSN---MDIGILAADHIFHLAP-NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 465 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
.|+..+--.+.+++.+..+ ..+++.+++.+.+.+| .....+..++-++.+.|++++|+++.+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3455555555555555443 3356666666666555 23445556666666666666666666666543
No 253
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.88 E-value=5 Score=28.75 Aligned_cols=88 Identities=13% Similarity=-0.008 Sum_probs=63.8
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 008276 142 GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE 221 (571)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 221 (571)
-....++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|... +.|..+++..-+.+
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 45567888888888887663 222223334567889999999999999999999998877654 67888888888877
Q ss_pred HHHCCCCCCHHHH
Q 008276 222 MESLRIKPDADTM 234 (571)
Q Consensus 222 m~~~g~~p~~~t~ 234 (571)
+..+| .|....|
T Consensus 95 la~sg-~p~~q~F 106 (116)
T 2p58_C 95 LARSQ-DPRIQTF 106 (116)
T ss_dssp HTTCC-CHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 77665 3443333
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.32 E-value=1.8 Score=44.72 Aligned_cols=127 Identities=18% Similarity=0.116 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHhhCCCCCh--hHH--HHHHHHHHhcC-ChHHHHHHHHHHHHC------CCCCCHH--
Q 008276 336 LENALVDMYAKCGS-LTEARTVFDQMRCQDV--VSW--TSMISAYGMSG-QGYDAVALFSKMLMS------GLCPDSI-- 401 (571)
Q Consensus 336 ~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~--~~~--~~li~~~~~~~-~~~~a~~~~~~m~~~------g~~p~~~-- 401 (571)
....++..+...++ .+.|..+|+++.+.++ ..+ ..++..+.+.+ +--+|..++.+..+. ...+...
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 33455555555655 5778888888765322 222 22222222222 223456666555431 1222110
Q ss_pred ---------HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 008276 402 ---------AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM 464 (571)
Q Consensus 402 ---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (571)
....-.+-|...|+++.|+.+-++.... .+.+..+|..|+.+|...|+++.|+-.++.++.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 1111123355678888888888887753 344567888888888888888888888888753
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.50 E-value=7.4 Score=42.97 Aligned_cols=81 Identities=7% Similarity=-0.026 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 008276 403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR---IEHFACLVDLLGRAGKVEEAYDLIKQMP-MEPNERIWGSLVAAC 478 (571)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~ 478 (571)
|..++..+.+.+.++.+.++-+...+..+-.++ ...|..+.+.+...|++++|-..+-.++ ..-...++..|+...
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~l 981 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQL 981 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 444555555566666666555555443111111 1135555666666666666666555441 112344555555555
Q ss_pred HhcCC
Q 008276 479 CLYSN 483 (571)
Q Consensus 479 ~~~g~ 483 (571)
+..|.
T Consensus 982 ce~~~ 986 (1139)
T 4fhn_B 982 TKQGK 986 (1139)
T ss_dssp HHHCC
T ss_pred HhCCC
Confidence 54443
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.38 E-value=8 Score=42.71 Aligned_cols=64 Identities=6% Similarity=-0.131 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCch----hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276 469 RIWGSLVAACCLYSNMDIGILAADHIFHLAP-NQSG----YYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532 (571)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 532 (571)
..|..++..+.+.+-++.+.++.+.+++..+ ++.. .|..+...+...|++++|...+-.+.+..
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 3455566666666666666666666666442 2221 45566666666777777766666555443
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.08 E-value=18 Score=33.04 Aligned_cols=113 Identities=11% Similarity=-0.022 Sum_probs=67.6
Q ss_pred HHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHH----HHHHhCCCCCCcccHHHHHHHhh
Q 008276 66 IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVY----KNMSVHGFDPDCYTYPCVLKACS 141 (571)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~----~~m~~~g~~p~~~~~~~li~~~~ 141 (571)
+|.++..-|.+.+++++|++++- .-...+.+.|+...+-++- +.+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~-----------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA-----------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 44556667778888888887643 2334566667766655544 55566677888777777777665
Q ss_pred cCCCh-HHHHHHHHHH----HHhC--CCCchhHHHHHHHHHHhCCCHHHHHHHHc
Q 008276 142 GSNSL-LVGLQIHCSV----VKVG--LDYNLFNGNGLVAMYGKCGCLKEARRVLN 189 (571)
Q Consensus 142 ~~~~~-~~a~~~~~~~----~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 189 (571)
....- ..-..+.+.+ .+.| ..-++..+..+...|.+.+++.+|+..|-
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 54421 1112233333 2333 22355666777777777777777777663
No 258
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=86.15 E-value=14 Score=30.98 Aligned_cols=155 Identities=9% Similarity=0.030 Sum_probs=96.2
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 008276 61 HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC 140 (571)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 140 (571)
.++..+....+..+.+.|..+....+.+.+..++...-...+.++.+.++.+ +...+..+.. .++...-...+.++
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVAL 105 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 4566777777777777777555556666666777777777777777777643 4444444443 35555555666666
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHH
Q 008276 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220 (571)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 220 (571)
.+.++.+.. ..+..+.. .++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.+. .++...+.
T Consensus 106 ~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~ 180 (211)
T 3ltm_A 106 GQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAME 180 (211)
T ss_dssp HHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred HHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 666664433 33333332 46666666777777777776555555555555676666667777777765 55666666
Q ss_pred HHHH
Q 008276 221 EMES 224 (571)
Q Consensus 221 ~m~~ 224 (571)
.+.+
T Consensus 181 ~~l~ 184 (211)
T 3ltm_A 181 KLAE 184 (211)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.03 E-value=2.3 Score=37.23 Aligned_cols=57 Identities=14% Similarity=0.265 Sum_probs=37.7
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276 445 LLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501 (571)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 501 (571)
.+.+.|++++|++....- .-.| |...-..|+..+|-.|++++|.+-++...+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345667777777665544 3344 56666667777777777777777777777777653
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.47 E-value=18 Score=31.66 Aligned_cols=52 Identities=15% Similarity=0.036 Sum_probs=26.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276 376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428 (571)
Q Consensus 376 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 428 (571)
.+.|..+++++....-++. -+-|...-..+++.+|-.|+++.|..-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455555555555554443 122444444455555555555555555555543
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.39 E-value=6.4 Score=28.35 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=37.2
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 008276 461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509 (571)
Q Consensus 461 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 509 (571)
.+..-|++....+.+++|.+.+|+..|+++++-+...-.+...+|..++
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3366788888888888888888888888888887776654555566553
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.27 E-value=5.9 Score=30.27 Aligned_cols=63 Identities=11% Similarity=0.276 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD 444 (571)
Q Consensus 380 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (571)
|.-+..+-++.+...++.|++......+++|-+.+++..|.++|+-++.+.+ +...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4456667777777888999999999999999999999999999999987533 33445655554
No 263
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.60 E-value=7.4 Score=36.79 Aligned_cols=69 Identities=9% Similarity=0.039 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHH----hcCCCCCHHH
Q 008276 369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE----QYKLVPRIEH 438 (571)
Q Consensus 369 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 438 (571)
..++..+...|++++++..+..+... -+-+...+..++.++...|+..+|.+.|+.+.+ ..|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556667778888888777777663 233666777888888888888888877776543 3367777654
No 264
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=84.39 E-value=38 Score=34.40 Aligned_cols=17 Identities=6% Similarity=0.218 Sum_probs=14.6
Q ss_pred HHhcCCHHHHHHHHHHH
Q 008276 512 YAKAGRWGDVKRVRKFM 528 (571)
Q Consensus 512 ~~~~g~~~~A~~~~~~m 528 (571)
+.+.|+|++|++.++++
T Consensus 548 ~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHTTCHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhC
Confidence 47899999999998864
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.99 E-value=13 Score=30.80 Aligned_cols=30 Identities=0% Similarity=-0.292 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 008276 468 ERIWGSLVAACCLYSNMDIGILAADHIFHL 497 (571)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 497 (571)
...|......+-..|++++|..+|+..++.
T Consensus 115 AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 115 SLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 334444444444455555555555555443
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.10 E-value=30 Score=31.55 Aligned_cols=126 Identities=10% Similarity=0.036 Sum_probs=65.3
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhccCCchH-HHHHHHHHHH----HcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 008276 288 LQMEVHGIEPNAISVASVLPACGDLSALL-LGRKIHRYVE----RKK--LQPNLRLENALVDMYAKCGSLTEARTVFDQM 360 (571)
Q Consensus 288 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (571)
+-+.+.++++|......++..+.....-+ .-.++.+.++ +.| ..-++.....+...|.+.+++.+|+..|-.-
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg 162 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLG 162 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc
Confidence 33444556666666666655554433211 1122333332 223 2345667778888999999999998888533
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE 428 (571)
Q Consensus 361 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 428 (571)
..++...+..++--+...+... .++...-..++ -|...++...|..+++...+
T Consensus 163 ~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 163 TKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp CTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 3333355544444333332211 11222222233 34556788888777666554
No 267
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.92 E-value=41 Score=32.35 Aligned_cols=184 Identities=11% Similarity=0.077 Sum_probs=112.9
Q ss_pred CCchHHHHHHHHHHHC-----CCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHH----HHHhcC
Q 008276 278 SMPAEAVDLYLQMEVH-----GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD----MYAKCG 348 (571)
Q Consensus 278 g~~~~A~~~~~~m~~~-----g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~ 348 (571)
|+++.|++-+-.+.+. ...........++..|...++++...+.+..+.+..-.. ......+++ ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 4566676666555432 233455667777777888888887777666555432121 122223332 222222
Q ss_pred C--HHHHHHHHhhCCC---C-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHhh
Q 008276 349 S--LTEARTVFDQMRC---Q-------DVVSWTSMISAYGMSGQGYDAVALFSKMLMS--GLCPD---SIAFVSVLSACS 411 (571)
Q Consensus 349 ~--~~~a~~~~~~~~~---~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~l~~~~~ 411 (571)
. .+.-..+.+.+.. . .......|...+...|++.+|..++..+... |..+. ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2 2222333333321 1 1223466788899999999999999998642 32222 235667788899
Q ss_pred cCCCHHHHHHHHHHHHHh-cCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276 412 HAGLLEEGRYYFKIMTEQ-YKLVPRI----EHFACLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 412 ~~~~~~~a~~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
..+++..|..++.++... ....+.+ ..+...+..+...+++.+|.+.|.++
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999987532 1222222 45677888888999999998887766
No 268
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=80.77 E-value=23 Score=29.33 Aligned_cols=155 Identities=9% Similarity=0.033 Sum_probs=88.6
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 008276 61 HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC 140 (571)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 140 (571)
.++..+....+..+...+..+....+.+.+..++...-...+.++.+.+..+ +...+..+.. .++...-...+.++
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVAL 100 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3455666666666666666555555555566666666666667777776643 3334444433 24555555566666
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHH
Q 008276 141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220 (571)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 220 (571)
.+.++.+....+. .+.. .++..+-...+.++.+.|+.+....+.+.+..++...-...+.++...|. +++...+.
T Consensus 101 ~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~ 175 (201)
T 3ltj_A 101 GQIGDERAVEPLI-KALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAME 175 (201)
T ss_dssp HHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred HHhCcHHHHHHHH-HHHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 6666543333332 2322 45666666667777777765544445555555666666666666666665 45555555
Q ss_pred HHHH
Q 008276 221 EMES 224 (571)
Q Consensus 221 ~m~~ 224 (571)
.+..
T Consensus 176 ~~l~ 179 (201)
T 3ltj_A 176 KLAE 179 (201)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.02 E-value=34 Score=30.89 Aligned_cols=180 Identities=12% Similarity=0.094 Sum_probs=97.2
Q ss_pred HHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHH
Q 008276 175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKE 254 (571)
Q Consensus 175 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~ 254 (571)
-...|++=+|.+. |.++..-|.+.+++++|++++..--
T Consensus 23 ~I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~ga------------------------------- 60 (312)
T 2wpv_A 23 KIKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQGA------------------------------- 60 (312)
T ss_dssp HHHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHH-------------------------------
T ss_pred HhhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHHHH-------------------------------
Confidence 3455666666665 4566667777777877777764431
Q ss_pred HHhhCCCCChhhHHHHHHHHHHcCCchHHHH----HHHHHHHCCCCCCHHHHHHHHHHhccCCchH-HHHHHHHHHH---
Q 008276 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVD----LYLQMEVHGIEPNAISVASVLPACGDLSALL-LGRKIHRYVE--- 326 (571)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~--- 326 (571)
..+.+.|+...|-+ +++-+.+.+++++......++..+......+ .-.++.+.++
T Consensus 61 -----------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS 123 (312)
T 2wpv_A 61 -----------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWS 123 (312)
T ss_dssp -----------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHH
T ss_pred -----------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHH
Confidence 12334444444333 3444455667777766666666654432111 1123333333
Q ss_pred -HcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCH
Q 008276 327 -RKKL--QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS---GQGYDAVALFSKMLMSGLCPDS 400 (571)
Q Consensus 327 -~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~ 400 (571)
+.|. .-++.....+...|.+.+++.+|+..|-.-...|...+..++--+... |...++ +.
T Consensus 124 ~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dl 189 (312)
T 2wpv_A 124 IKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AE 189 (312)
T ss_dssp HHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HH
T ss_pred hhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HH
Confidence 3321 236677778888899999999988877633322344444444333332 222111 11
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276 401 IAFVSVLSACSHAGLLEEGRYYFKIMTE 428 (571)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 428 (571)
..-..++ -|.-.++...|..+++...+
T Consensus 190 f~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 190 FFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 1112222 34456788888888877654
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.02 E-value=12 Score=35.85 Aligned_cols=94 Identities=9% Similarity=-0.068 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHH--HH
Q 008276 336 LENALVDMYAKCGSLTEARTVFDQMRC------QDVVSWTSMISAYGMSGQGYDAVALFSKMLM---SGLCPDSIA--FV 404 (571)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~--~~ 404 (571)
+...+...|.+.|+++.|.+.|.++.. .-...+-..++.+...+++..+...+.+... .+-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455677778888888888888877753 2234566777777788888888888777643 232333222 11
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHh
Q 008276 405 SVLSACSHAGLLEEGRYYFKIMTEQ 429 (571)
Q Consensus 405 ~l~~~~~~~~~~~~a~~~~~~~~~~ 429 (571)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122345567788877777776655
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.77 E-value=24 Score=27.83 Aligned_cols=49 Identities=8% Similarity=0.012 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008276 487 GILAADHIFHLA--PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK 535 (571)
Q Consensus 487 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 535 (571)
+..+|..+...+ ......|...+..+...|++.+|.++++.=++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 566666666543 5566677777777788888888888877766665443
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.11 E-value=18 Score=25.97 Aligned_cols=85 Identities=15% Similarity=0.072 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008276 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393 (571)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 393 (571)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|..|... +.|-.+++...+..+..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45666666666666543 222222334556778889999888888888888888777543 67777777777777766
Q ss_pred CCCCCCHHHH
Q 008276 394 SGLCPDSIAF 403 (571)
Q Consensus 394 ~g~~p~~~~~ 403 (571)
+| .|....|
T Consensus 97 sg-~p~~q~F 105 (115)
T 2uwj_G 97 SS-DPALADF 105 (115)
T ss_dssp CS-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 64 3444344
No 273
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.54 E-value=17 Score=27.87 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=40.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 008276 459 IKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS 509 (571)
Q Consensus 459 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 509 (571)
+-.+.+-|++....+.+++|.+.+|+..|+++++-+...-.+...+|..++
T Consensus 79 l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 79 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 334467799999999999999999999999999988876655566676653
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.20 E-value=20 Score=25.71 Aligned_cols=85 Identities=13% Similarity=0.122 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008276 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM 393 (571)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 393 (571)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|..|... +.|-.+++...+..+..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45666666666665543 222222334456778888888888888888888888777553 66777777777766666
Q ss_pred CCCCCCHHHH
Q 008276 394 SGLCPDSIAF 403 (571)
Q Consensus 394 ~g~~p~~~~~ 403 (571)
+| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 54 3333344
No 275
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=74.33 E-value=37 Score=28.28 Aligned_cols=91 Identities=16% Similarity=0.102 Sum_probs=40.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 008276 332 PNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411 (571)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 411 (571)
++..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.++.+ +...+..+.. .++...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 444444455555555555433334444444455555555555555555432 3333333332 234444344444444
Q ss_pred cCCCHHHHHHHHHHHH
Q 008276 412 HAGLLEEGRYYFKIMT 427 (571)
Q Consensus 412 ~~~~~~~a~~~~~~~~ 427 (571)
..+. ..+...+..+.
T Consensus 169 ~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHCS-HHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHH
Confidence 4443 33333343333
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=73.43 E-value=33 Score=27.44 Aligned_cols=32 Identities=6% Similarity=0.150 Sum_probs=14.6
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 500 NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 500 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
.....|...+..+...|++.+|.++++.=++.
T Consensus 94 ~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 94 SLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33444444444444444444444444444433
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.19 E-value=9.1 Score=36.78 Aligned_cols=97 Identities=6% Similarity=-0.066 Sum_probs=60.4
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHH---
Q 008276 402 AFVSVLSACSHAGLLEEGRYYFKIMTEQY-KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM----PMEPNERIWGS--- 473 (571)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~--- 473 (571)
+...+...+.+.|+++.|.+++.++.... +...-...+...++.+...+++..+...+.++ ...++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45667777888888888888888887642 11222356777778888888888888777776 11222222111
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHhhC
Q 008276 474 -LVAACCLYSNMDIGILAADHIFHLA 498 (571)
Q Consensus 474 -l~~~~~~~g~~~~A~~~~~~~~~~~ 498 (571)
-+..+...+++..|-..|-.+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 1122345677777777777665543
No 278
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=70.90 E-value=43 Score=27.57 Aligned_cols=159 Identities=13% Similarity=0.080 Sum_probs=71.2
Q ss_pred hhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhH
Q 008276 257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336 (571)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (571)
+.+..+|...-...+.++...+..+. ...+.++.. .++...-...+.++...++.+....+.+ +.. .++..+
T Consensus 21 ~~L~~~~~~vr~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~---d~~~~v 92 (201)
T 3ltj_A 21 KNLQDDSYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-ALK---DEDGWV 92 (201)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHH
T ss_pred HHhcCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc---CCCHHH
Confidence 33344455555555555555554332 233333332 3444444444444444444322222222 221 345555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCH
Q 008276 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL 416 (571)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~ 416 (571)
-...+.++.+.++.+....+.+.+..++...-...+.++.+.++. .+...+..+.. .++...-...+.++...|.
T Consensus 93 r~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~- 167 (201)
T 3ltj_A 93 RQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG- 167 (201)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-
Confidence 555555666555544444444444455555555555555555543 23333333333 2344444444455544444
Q ss_pred HHHHHHHHHHHH
Q 008276 417 EEGRYYFKIMTE 428 (571)
Q Consensus 417 ~~a~~~~~~~~~ 428 (571)
+++...+..+..
T Consensus 168 ~~~~~~L~~~l~ 179 (201)
T 3ltj_A 168 ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHh
Confidence 334444444433
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=68.14 E-value=1.1e+02 Score=30.98 Aligned_cols=238 Identities=10% Similarity=-0.108 Sum_probs=125.2
Q ss_pred CchHHHHHHHHHHHCCCCCCHH----HHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 008276 279 MPAEAVDLYLQMEVHGIEPNAI----SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR 354 (571)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 354 (571)
+.+.|...+....... ..+.. ....+.......+...++...+...... ..+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 7788888888876543 22322 2223333445555345555555554433 233333444555556779999999
Q ss_pred HHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 008276 355 TVFDQMRCQ---DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431 (571)
Q Consensus 355 ~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 431 (571)
..|+.|... ...-.--+..++...|+.++|..+|+.+... .+ .|..+.. .+.|..-.. ....
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lAa--~~Lg~~~~~--------~~~~ 370 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA--QRIGEEYEL--------KIDK 370 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH--HHTTCCCCC--------CCCC
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHHH--HHcCCCCCC--------CCCC
Confidence 999999763 2333444566778889999999999998652 22 2333322 222221000 0000
Q ss_pred CCC---CH-H--HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCc
Q 008276 432 LVP---RI-E--HFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP---NQS 502 (571)
Q Consensus 432 ~~~---~~-~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~~ 502 (571)
..+ .. . .-...+..+...|....|...+..+....+......+.......|.++.++....+....+. .-+
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P 450 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFP 450 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSC
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCC
Confidence 001 00 0 11223456777888888888777662123434344444455567888877765544332220 112
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008276 503 GYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534 (571)
Q Consensus 503 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 534 (571)
..|..++.-+.+.-.++.++-+---..|.+..
T Consensus 451 ~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~ 482 (618)
T 1qsa_A 451 LAYNDLFKRYTSGKEIPQSYAMAIARQESAWN 482 (618)
T ss_dssp CTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHhCCCC
Confidence 23555555555554455444332233344444
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=66.54 E-value=55 Score=27.17 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=41.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH
Q 008276 378 SGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436 (571)
Q Consensus 378 ~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 436 (571)
.+...++.++|..|...|+--... .|......+...|++.+|..+|+.-.+. +-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccHH
Confidence 334667888888888877665544 5666777777888888888888887776 555543
No 281
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=61.81 E-value=1.1e+02 Score=28.81 Aligned_cols=292 Identities=11% Similarity=0.047 Sum_probs=145.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHccCCC--------CCchhHHHHHHHHHhCCC-chHHHHHHHHHHHCCCCCCHHHHHHH
Q 008276 167 NGNGLVAMYGKCGCLKEARRVLNDMPS--------KDVVTWNSMVAGYAQNGR-FDEALDVCREMESLRIKPDADTMASL 237 (571)
Q Consensus 167 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~l 237 (571)
....|...|.+.|+.++...++..... +.......++..+....+ .+.-.++..+..+.
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~------------ 88 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEW------------ 88 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH------------
Confidence 345678889999999999998887764 123344555655554332 22222222222210
Q ss_pred HHHhcCCCCccHHHHHHHHhhCCCCChhhH------HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH-----HHHHHHH
Q 008276 238 LPSVTNTSPENVLSVKEMFLKLDNKNLVSW------NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA-----ISVASVL 306 (571)
Q Consensus 238 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-----~~~~~ll 306 (571)
... +-..| ..++..|...|++.+|..++.++.+.--+.|. ..+..-+
T Consensus 89 ---------------------a~~-~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~ 146 (394)
T 3txn_A 89 ---------------------AKQ-EKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLES 146 (394)
T ss_dssp ---------------------HHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHH
T ss_pred ---------------------HHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 000 00111 25788899999999999999888764222221 2344445
Q ss_pred HHhccCCchHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHH-hcCChHH
Q 008276 307 PACGDLSALLLGRKIHRYVERK--KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG-MSGQGYD 383 (571)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~ 383 (571)
..|...+++..+...+...... .+.+++.+... +..+ -...+. ..++|..
T Consensus 147 ~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~-i~~~--------------------------~Gi~~l~~~rdyk~ 199 (394)
T 3txn_A 147 KTYHALSNLPKARAALTSARTTANAIYCPPKVQGA-LDLQ--------------------------SGILHAADERDFKT 199 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH-HHHH--------------------------HHHHHHHTTSCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH-HHHH--------------------------hhHHHHHhccCHHH
Confidence 5566667777777666665532 12222222211 1111 011233 4455555
Q ss_pred HHHHHHHHHH----CCCCC---CHHHHHHHHHHhhcCCCHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008276 384 AVALFSKMLM----SGLCP---DSIAFVSVLSACSHAGLLEEGRYYFK-IMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455 (571)
Q Consensus 384 a~~~~~~m~~----~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (571)
|...|-+..+ .| .| +...|..+.... . ++..+...++. .....+ ..|+...+..++.+| ..+++.+.
T Consensus 200 A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~aLl-~-~~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f 274 (394)
T 3txn_A 200 AFSYFYEAFEGFDSVD-SVKALTSLKYMLLCKIM-L-GQSDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADF 274 (394)
T ss_dssp HHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHH-T-TCGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHH-c-CCHHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHH
Confidence 5554444321 11 01 122343332222 2 22222222222 222221 345555566666665 56788888
Q ss_pred HHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008276 456 YDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533 (571)
Q Consensus 456 ~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 533 (571)
..+++.. .+..|......+-..+.+ --...+.++ ..|-.......++..+.- ..+++...+-+|...|.
T Consensus 275 ~~iL~~~~~~l~~D~~l~~h~~~L~~~-----Ir~~~L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 275 QAALKEYKKELAEDVIVQAHLGTLYDT-----MLEQNLCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHSTTTTTTSHHHHHHHHHHHHH-----HHHHHHHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHH-----HHHHHHHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 8887776 234454422111100000 001111111 236666677777776543 78999999999987763
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.45 E-value=85 Score=27.23 Aligned_cols=183 Identities=9% Similarity=-0.043 Sum_probs=94.1
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHhhcCCCChh---HHHHHHHHhhcCCChHHHHHHHcccCCCC---hhhHHHHHHHHH
Q 008276 33 ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPS---IGLKLMRTYGACGQMVDTRHVFDEITNKN---VVFFNVLIRSYV 106 (571)
Q Consensus 33 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~ 106 (571)
+.....++.|+++..+.++ +.|..++.. .-.+.+...+..|+.+-+..+++.-..++ ..-++ .+...+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll-----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~ 80 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL-----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT-PFLLAA 80 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH-----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH-----HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCC-HHHHHH
Confidence 4455567778877555444 344433321 11244556667788887777776644332 22222 233444
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCcccH--HHHHHHhhcCCChHHHHHHHHHHHHhCCCCchh------------HHHHHH
Q 008276 107 NNYLYYDALHVYKNMSVHGFDPDCYTY--PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF------------NGNGLV 172 (571)
Q Consensus 107 ~~~~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------------~~~~l~ 172 (571)
..|+.+ +++.+.+.|..++.... ...+...+..|+.+ +++.+.+.|..++.. .-...+
T Consensus 81 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 81 IAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred HcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence 556644 44455556655543221 12333344556654 444455555544322 011234
Q ss_pred HHHHhCCCHHHHHHHHccCC-C---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 008276 173 AMYGKCGCLKEARRVLNDMP-S---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230 (571)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 230 (571)
...+..|+.+-+..+++... . .+....+.+ ...+..++.....++++.+.+.|..++
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCC
Confidence 45566788887777776522 1 222222333 333445666666677777777776654
No 283
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=59.87 E-value=1e+02 Score=27.87 Aligned_cols=58 Identities=9% Similarity=0.101 Sum_probs=42.1
Q ss_pred HhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276 460 KQMPMEPN--ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK 531 (571)
Q Consensus 460 ~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 531 (571)
-..++.|. ..++..-+....+.+++..|..+.+++++++|+.. ..+.|.+++......
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 33355663 34667777888999999999999999999998522 335577777776544
No 284
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=57.96 E-value=96 Score=27.09 Aligned_cols=20 Identities=15% Similarity=-0.115 Sum_probs=9.6
Q ss_pred CCChhhHHHHHHHHHHcCCc
Q 008276 261 NKNLVSWNVMIAVYANNSMP 280 (571)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~ 280 (571)
.++...-...+.++.+.|+.
T Consensus 203 d~~~~vR~~A~~aL~~~~~~ 222 (280)
T 1oyz_A 203 DKNEEVRIEAIIGLSYRKDK 222 (280)
T ss_dssp CSCHHHHHHHHHHHHHTTCG
T ss_pred CCCHHHHHHHHHHHHHhCCH
Confidence 34444444445555555543
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.52 E-value=93 Score=26.17 Aligned_cols=186 Identities=6% Similarity=-0.070 Sum_probs=95.2
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhH--HHHHHHHhhcCCChHHHHHHHcccCCCCh---hhHHHHHHHHHH
Q 008276 33 ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSI--GLKLMRTYGACGQMVDTRHVFDEITNKNV---VFFNVLIRSYVN 107 (571)
Q Consensus 33 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~ 107 (571)
+.+...+..|+.+.++.+++.+. +.+..++... -.+.+...+..|+.+-+..+++.-..++. .-+ ..+...+.
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~ 88 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQ-QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ-TAAHLACE 88 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHH-hcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC-CHHHHHHH
Confidence 34556677899998888888776 6665544321 12345556667888777777765444322 222 23444556
Q ss_pred cCChhHHHHHHHHHHhCCCCCC---cccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhH---HHHHHHHHHhCCCH
Q 008276 108 NYLYYDALHVYKNMSVHGFDPD---CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN---GNGLVAMYGKCGCL 181 (571)
Q Consensus 108 ~~~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~l~~~~~~~g~~ 181 (571)
.|+.+-+..+++.....++.++ ....+.+ ...+..|+. ++++.+++.|..++... ....+...+..|+.
T Consensus 89 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTAL-HVAVNTECQ----ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHH-HHHHHHTCH----HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHcCCCccccccccCcCCCcHH-HHHHHcCCH----HHHHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Confidence 7776665555555432212222 2222222 333344554 34455555665544321 22344555677888
Q ss_pred HHHHHHHccCCCC---CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 008276 182 KEARRVLNDMPSK---DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD 230 (571)
Q Consensus 182 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 230 (571)
+-+..+++.-..+ +..-.+ .+...+..|+.+ +++.+.+.|..++
T Consensus 164 ~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 164 SMVQLLLQHGANVNAQMYSGSS-ALHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp HHHHHHHHTTCCTTCBCTTSCB-HHHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHHHHHHcCCCCCCcCCCCCC-HHHHHHHcCCHH----HHHHHHhcCCCCC
Confidence 7777777653332 222222 233334455543 4444455565544
No 286
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.26 E-value=1.2e+02 Score=32.72 Aligned_cols=85 Identities=6% Similarity=-0.202 Sum_probs=49.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCC----------------
Q 008276 406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--PMEPN---------------- 467 (571)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~---------------- 467 (571)
++..|...+.++-+.++.. -.+.++..-..+..+|...|++++|...|+++ ++..+
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 4555666676665544332 22334433345677778888888888888877 22111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276 468 -------ERIWGSLVAACCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 468 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (571)
...|..++..+-+.+-++-+.++.+.+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 12445555555566666666666666665
No 287
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=51.92 E-value=82 Score=26.64 Aligned_cols=32 Identities=0% Similarity=-0.211 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 008276 467 NERIWGSLVAACCLYSNMDIGILAADHIFHLA 498 (571)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 498 (571)
-...|......+-..|++++|..+|+..++..
T Consensus 149 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 149 SSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34556666666666777777777777766655
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=51.15 E-value=91 Score=27.00 Aligned_cols=41 Identities=10% Similarity=0.044 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCCCChhH--HHHHHHHHHhcCCHHHHHHHHh
Q 008276 318 GRKIHRYVERKKLQPNLRL--ENALVDMYAKCGSLTEARTVFD 358 (571)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~ 358 (571)
...+.+.+.+.|..++... ..+.+...+..|+.+-+..+++
T Consensus 198 ~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3444444555444333211 1123344455677777666666
No 289
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=50.33 E-value=79 Score=25.41 Aligned_cols=98 Identities=11% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHH
Q 008276 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK 253 (571)
Q Consensus 174 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~ 253 (571)
.+.-.|.+.+++-++.....-...-|..| ++-+..++..|+..++.+....+..|+..=..+-..+...++
T Consensus 42 ~LyyngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~D------- 112 (242)
T 3kae_A 42 VLYLNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGD------- 112 (242)
T ss_dssp HHHHTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTC-------
T ss_pred hhhhcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccch-------
Q ss_pred HHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHH
Q 008276 254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ 289 (571)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (571)
....|+.+...+.+.|+.++|+..+..
T Consensus 113 ---------kEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 113 ---------EEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp ---------HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHhcCHHHhhhHhhh
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=48.55 E-value=97 Score=24.36 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH
Q 008276 382 YDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436 (571)
Q Consensus 382 ~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 436 (571)
+++.++|..|...|+-.... .|......+...|++.+|.++|+.-.+. +-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccHH
Confidence 44788888888887766544 6777777788888888888888888776 555543
No 291
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=47.80 E-value=1.2e+02 Score=25.11 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=41.8
Q ss_pred HHHHHHHHH---HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHcC
Q 008276 267 WNVMIAVYA---NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA-----LLLGRKIHRYVERKK 329 (571)
Q Consensus 267 ~~~l~~~~~---~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~ 329 (571)
+.-+|+++. +-.+.+.|+-++.+|++.| .|....-..++.+.-..|. ...|...++.....|
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 83 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLG 83 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC
Confidence 444555554 4579999999999999999 7777777777777766663 233344444445555
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=44.47 E-value=1.2e+02 Score=25.66 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH
Q 008276 382 YDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436 (571)
Q Consensus 382 ~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 436 (571)
+.+.++|..|...|+--... .|......+...|++.+|..+|+.-++. +-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccHH
Confidence 56778888888888766544 6777777788888899999888888776 555643
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.34 E-value=82 Score=27.00 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=16.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh
Q 008276 101 LIRSYVNNYLYYDALHVYKNMSV 123 (571)
Q Consensus 101 li~~~~~~~~~~~A~~~~~~m~~ 123 (571)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45677778888888888776643
No 294
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.61 E-value=86 Score=26.88 Aligned_cols=22 Identities=5% Similarity=-0.182 Sum_probs=13.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH
Q 008276 407 LSACSHAGLLEEGRYYFKIMTE 428 (571)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~~~~ 428 (571)
++.+....++++|..++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4555566666666666665543
No 295
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=41.61 E-value=1.6e+02 Score=28.18 Aligned_cols=90 Identities=8% Similarity=0.008 Sum_probs=52.5
Q ss_pred hHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHHHc
Q 008276 32 DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYVNN 108 (571)
Q Consensus 32 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 108 (571)
+.+--+.....+.+.|.++-. +.|++-....|..-.+.+...|++++|.++-...+. ++..|.+.+-..=...
T Consensus 333 ~ivpyi~~~l~n~~lA~~lA~----R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~p 408 (494)
T 1bpo_A 333 NIIPYITNVLQNPDLALRMAV----RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQP 408 (494)
T ss_dssp THHHHHHHTTCCHHHHHHHHH----HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCT
T ss_pred cchhhhhhccCCHHHHHHHHH----hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCC
Confidence 334444455577776666655 556665556666667777788888888877766654 3444444333333334
Q ss_pred CChhHHHHHHHHHHhCC
Q 008276 109 YLYYDALHVYKNMSVHG 125 (571)
Q Consensus 109 ~~~~~A~~~~~~m~~~g 125 (571)
|+..--+..|..+.+.|
T Consensus 409 gq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 409 GQTSPLLQYFGILLDQG 425 (494)
T ss_dssp TSCCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhccC
Confidence 44555555555555544
No 296
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.75 E-value=1.6e+02 Score=24.61 Aligned_cols=24 Identities=8% Similarity=-0.139 Sum_probs=11.5
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCC
Q 008276 104 SYVNNYLYYDALHVYKNMSVHGFD 127 (571)
Q Consensus 104 ~~~~~~~~~~A~~~~~~m~~~g~~ 127 (571)
..++.|+.+-+..+++.+.+.|..
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Confidence 334445555555555544444433
No 297
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=40.65 E-value=1e+02 Score=30.03 Aligned_cols=55 Identities=11% Similarity=-0.077 Sum_probs=38.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276 475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN 529 (571)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 529 (571)
.........++.|...|.++..+.|.+...|+.|+......|+.-+|.-++-+..
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3334445566777888888888888887788888777777777777776665554
No 298
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.44 E-value=1.4e+02 Score=23.83 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHH
Q 008276 382 YDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE 437 (571)
Q Consensus 382 ~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 437 (571)
+.+.++|..|...|+--... .|......+...|++.+|.++|+.-.+. +-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHH
Confidence 34677888888887766544 6666777778888888888888888776 5566543
No 299
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=40.32 E-value=1.6e+02 Score=24.63 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHH---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHcC
Q 008276 264 LVSWNVMIAVYAN---NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA-----LLLGRKIHRYVERKK 329 (571)
Q Consensus 264 ~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~ 329 (571)
-..+.-+|+++.+ -.+.+.|+-++.+|++.|..|....-..++.+.-..|. ...|...++.....|
T Consensus 32 Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 105 (213)
T 3ctd_A 32 GQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVG 105 (213)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC
Confidence 3445555666554 57999999999999999988887777777777665553 333444444444445
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.95 E-value=75 Score=31.01 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276 401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI---EHFACLVDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (571)
..++.+++.|...+.++.|..+..+..--....++. ..+..+.+.+.-.+++.+|.+.+..+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 467888888999999999999988774110001121 22334566777788899998887765
No 301
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=39.87 E-value=1.5e+02 Score=24.50 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=11.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCc
Q 008276 477 ACCLYSNMDIGILAADHIFHLAPNQS 502 (571)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 502 (571)
.|.+.|.+++|.+++++..+.++++.
T Consensus 126 VCiekg~Fk~A~eiLkr~f~~~~~~~ 151 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIFGDPNSHM 151 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC-----CC
T ss_pred HHHHccchHHHHHHHHHHhcCCCCch
Confidence 45555555555555555554443333
No 302
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=39.48 E-value=1.3e+02 Score=24.76 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=34.5
Q ss_pred HHHHHHHH---HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 008276 268 NVMIAVYA---NNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS 313 (571)
Q Consensus 268 ~~l~~~~~---~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 313 (571)
.-+|+++. +-.+.+.|+-++.+|++.|..|....-..++.+.-..|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34455554 45799999999999999998887777777777765555
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=39.08 E-value=1e+02 Score=23.36 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHccCCCCCc---hhHHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCC
Q 008276 169 NGLVAMYGKCGCLKEARRVLNDMPSKDV---VTWNSMVAGYAQNGR--FDEALDVCREMESLRIKPD 230 (571)
Q Consensus 169 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~ 230 (571)
..++.=|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4577778888999999999999876522 233444445544432 3567778888877765544
No 304
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.05 E-value=1.2e+02 Score=25.26 Aligned_cols=16 Identities=0% Similarity=-0.193 Sum_probs=6.7
Q ss_pred HhhcCCChHHHHHHHc
Q 008276 73 TYGACGQMVDTRHVFD 88 (571)
Q Consensus 73 ~~~~~g~~~~A~~~~~ 88 (571)
..+..|+.+-+..+++
T Consensus 48 ~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 48 WAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHH
Confidence 3334444444444443
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.31 E-value=1.2e+02 Score=23.80 Aligned_cols=65 Identities=12% Similarity=0.223 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHH
Q 008276 337 ENALVDMYAKCGSLTEARTVFDQMRCQDV---VSWTSMISAYGMSGQ--GYDAVALFSKMLMSGLCPDSI 401 (571)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 401 (571)
...++.-|...|+.++|...++++..|.- .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 34577778888888888888888876522 223333334443222 345667777777766554433
No 306
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=36.53 E-value=2.1e+02 Score=24.78 Aligned_cols=38 Identities=8% Similarity=-0.011 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHH
Q 008276 282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH 322 (571)
Q Consensus 282 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 322 (571)
.+...+..+.. .++...-...+.++.+.|+......+.
T Consensus 192 ~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~ 229 (280)
T 1oyz_A 192 DIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLC 229 (280)
T ss_dssp HHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHH
Confidence 44444444432 344444455555555555443333333
No 307
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=36.31 E-value=1.2e+02 Score=25.31 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=12.1
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 008276 443 VDLLGRAGKVEEAYDLIKQM 462 (571)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~~ 462 (571)
+-.|.+.|.+++|.+++++.
T Consensus 121 V~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHH
Confidence 33455666666666666665
No 308
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.28 E-value=2.2e+02 Score=24.86 Aligned_cols=142 Identities=13% Similarity=-0.008 Sum_probs=67.6
Q ss_pred HHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccH--HHHHHHhhcCCChHH
Q 008276 71 MRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY--PCVLKACSGSNSLLV 148 (571)
Q Consensus 71 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~~~~~~ 148 (571)
+...+..|+.+-+..+++.-..++...-...+...+..|+.+-+ +.+.+.|..++.... .+.+...+..|+.+-
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~ 110 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDSGNMQT 110 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 44455567777777666653332222112334444555665433 333444554443211 122333445566554
Q ss_pred HHHHHHHHHHhCCCCchhH---HHHHHHHHHhCCCHHHHHHHHccCCCC-CchhHHHHHHHHHhCCCchHHHHHHH
Q 008276 149 GLQIHCSVVKVGLDYNLFN---GNGLVAMYGKCGCLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEALDVCR 220 (571)
Q Consensus 149 a~~~~~~~~~~g~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 220 (571)
+.. +++.|..++... +.+.+...+..|+.+-+..+++.-... +...-.+.+...+..|+.+-+.-+++
T Consensus 111 v~~----Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 111 VKL----FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHH----HHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHH----HHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence 433 344454443321 123455556677777777766654432 22122334444556666654444443
No 309
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=34.55 E-value=1.2e+02 Score=26.64 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=8.3
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 008276 479 CLYSNMDIGILAADHIFH 496 (571)
Q Consensus 479 ~~~g~~~~A~~~~~~~~~ 496 (571)
+..|+.+-+..+++.-..
T Consensus 169 ~~~g~~~~v~~Ll~~gad 186 (285)
T 3kea_A 169 IKNGHVDMMILLLDYMTS 186 (285)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcChHHHHHHHHHcCCC
Confidence 344555544444444333
No 310
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.40 E-value=1.5e+02 Score=22.43 Aligned_cols=65 Identities=12% Similarity=0.223 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHH
Q 008276 337 ENALVDMYAKCGSLTEARTVFDQMRCQDV---VSWTSMISAYGMSGQ--GYDAVALFSKMLMSGLCPDSI 401 (571)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 401 (571)
...++.-|...|+.++|...++++..|.- .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 34567778888888888888888876522 223333334443322 355677777777766554443
No 311
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.14 E-value=4.2e+02 Score=28.38 Aligned_cols=128 Identities=8% Similarity=-0.075 Sum_probs=72.5
Q ss_pred HHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChH
Q 008276 68 LKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLL 147 (571)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 147 (571)
..++..+...|..+-|.++....+. ++..--.+..+|...|++++|.+.|++.- .|+..+....... .
T Consensus 814 ~~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~----------~ 881 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVL----------R 881 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGG----------H
T ss_pred HHHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccch----------h
Confidence 3477778888999988887777775 44444567888999999999999998864 2443332221100 0
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccC----CCCCc----hhHHHHHHHHHhC
Q 008276 148 VGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM----PSKDV----VTWNSMVAGYAQN 209 (571)
Q Consensus 148 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~ 209 (571)
....++.... .......-|..++..+-+.+-++.+.++-+.. ...|. ..|+.+.++.+..
T Consensus 882 ~~~~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 882 EFQEIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 0111111000 00112235667777777777777766554432 22222 2455565555443
No 312
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.64 E-value=83 Score=24.75 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHccCCCCC---chhHHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCC
Q 008276 168 GNGLVAMYGKCGCLKEARRVLNDMPSKD---VVTWNSMVAGYAQNGR--FDEALDVCREMESLRIKPD 230 (571)
Q Consensus 168 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~ 230 (571)
...++.=|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3557777888899999999999887652 2233444445544332 4557777777777665544
No 313
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.90 E-value=1.2e+02 Score=29.54 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC----H--HHHH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 008276 436 IEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN----E--RIWG-SLVAACCLYSNMDIGILAADHIFHLAPNQS 502 (571)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~--~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 502 (571)
...++.+++.|...+.++.|..+..+..+... . ..|. .+...+...+++.+|.+.+..+.+.-|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 35678888888889999999999888733211 1 1222 234445668888899888888888777654
No 314
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=31.62 E-value=2.7e+02 Score=26.08 Aligned_cols=18 Identities=11% Similarity=0.231 Sum_probs=10.0
Q ss_pred HHHHhCCCHHHHHHHHcc
Q 008276 173 AMYGKCGCLKEARRVLND 190 (571)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~ 190 (571)
...+..|+.+-+..+++.
T Consensus 118 ~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 118 HIAAREGHVETVLALLEK 135 (437)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhC
Confidence 334455666666666554
No 315
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=31.33 E-value=2.2e+02 Score=25.67 Aligned_cols=126 Identities=11% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----
Q 008276 375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA----- 449 (571)
Q Consensus 375 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 449 (571)
+...|++++|+..|+..+. ...+.......+.+++.+++....+ +.....++.-.+.
T Consensus 112 ~~t~gKf~eAl~~Fr~iL~----------~i~l~~v~~~~e~~e~~eli~icre--------Yilal~iEl~Rr~l~~~~ 173 (320)
T 3mkr_B 112 LTTVGKFEEAVEKFRSILL----------SVPLLVVDNKQEIAEAQQLITICRE--------YIVGLSMETERKKLPKET 173 (320)
T ss_dssp HHHTTCHHHHHHHHHHHHH----------HGGGCCCCSHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTTSCCCS
T ss_pred HHhcCCHHHHHHHHHHHHH----------HhhheeeccHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcccCC
Q ss_pred -CCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHH
Q 008276 450 -GKVEEAYDLIKQM---PMEP--NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKR 523 (571)
Q Consensus 450 -g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 523 (571)
.+.....++-.-+ ++.| -..++..-+....+.+++..|..+.++++++.|+ ....+.|.+
T Consensus 174 ~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~--------------~~~~~qArk 239 (320)
T 3mkr_B 174 LEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK--------------PEVAQQTRK 239 (320)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC--------------HHHHHHHHH
T ss_pred chhHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--------------HHHHHHHHH
Q ss_pred HHHHHHhCC
Q 008276 524 VRKFMNSKG 532 (571)
Q Consensus 524 ~~~~m~~~~ 532 (571)
++......+
T Consensus 240 il~~ce~~~ 248 (320)
T 3mkr_B 240 ILSACEKNP 248 (320)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHhcCC
No 316
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.11 E-value=52 Score=23.51 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=39.5
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHH
Q 008276 50 LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDAL 115 (571)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 115 (571)
++..+. +.|+- +......+- ......+.+.|.++++.++.+.+.+|..++.++...|+..-|.
T Consensus 26 vld~L~-~~~vl-t~~~~e~I~-~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 26 LWDVLL-SRELF-RPHMIEDIQ-RAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp THHHHH-HTTSS-CHHHHHHHH-TSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHH-HcCCC-CHHHHHHHH-hccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 556666 55543 333222222 1111246788888998888888888998888887767655544
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.76 E-value=93 Score=24.12 Aligned_cols=62 Identities=8% Similarity=-0.007 Sum_probs=36.8
Q ss_pred HHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH
Q 008276 119 KNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181 (571)
Q Consensus 119 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 181 (571)
+.+.+.|+.++..-. .++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345566766665544 33444444555666777887777766555665555556666666543
No 318
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.35 E-value=1.3e+02 Score=23.34 Aligned_cols=60 Identities=7% Similarity=0.024 Sum_probs=35.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 008276 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451 (571)
Q Consensus 390 ~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (571)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|..--++.+...|-
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCC
Confidence 45567777666533 2344444555566777777777665 444455555555666666664
No 319
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.28 E-value=98 Score=23.64 Aligned_cols=61 Identities=10% Similarity=0.165 Sum_probs=39.3
Q ss_pred HHHhCCCCCCcccHHHHHHHhhcCC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH
Q 008276 120 NMSVHGFDPDCYTYPCVLKACSGSN-SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181 (571)
Q Consensus 120 ~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 181 (571)
.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35667777666554 3445555555 6677888888888877666666655566666666643
No 320
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=29.85 E-value=55 Score=20.81 Aligned_cols=25 Identities=12% Similarity=-0.038 Sum_probs=18.5
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCC
Q 008276 513 AKAGRWGDVKRVRKFMNSKGIKKMP 537 (571)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~~~~~~~~ 537 (571)
...|+.+.|...+-+|...+..++.
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 4568888888888888777666554
No 321
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=29.55 E-value=32 Score=17.32 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=10.0
Q ss_pred CCcCCCCCCCCCC
Q 008276 559 CLTTGPKNVPPIV 571 (571)
Q Consensus 559 ~~~~~~~~~~~~~ 571 (571)
..+++-|.+|+||
T Consensus 13 dngrctksippic 25 (31)
T 2ab9_A 13 DNGRCTKSIPPIC 25 (31)
T ss_dssp CCSSCCSSSSCSS
T ss_pred cCCeecccCCCcc
Confidence 4677888888886
No 322
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.33 E-value=1e+02 Score=24.09 Aligned_cols=62 Identities=8% Similarity=0.166 Sum_probs=41.9
Q ss_pred HHHHhCCCCCCcccHHHHHHHhhcCC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH
Q 008276 119 KNMSVHGFDPDCYTYPCVLKACSGSN-SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL 181 (571)
Q Consensus 119 ~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 181 (571)
+.+.+.|+.++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 446677777776655 3445555555 5667889999988877666766666667777777754
No 323
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=28.54 E-value=1.4e+02 Score=30.41 Aligned_cols=64 Identities=9% Similarity=0.042 Sum_probs=47.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH
Q 008276 452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518 (571)
Q Consensus 452 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 518 (571)
.+.|.++.+-|+ ...............|++..|.++.+.+...+|+|..+...++.+|.+.|.-
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 356667777774 2333344455566789999999999999999999999988888888877643
No 324
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.30 E-value=1.8e+02 Score=22.59 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=32.3
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 008276 390 KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451 (571)
Q Consensus 390 ~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (571)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|..--++.+...|-
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCc
Confidence 35556666555432 2344444555566677777777665 434455555555666666664
No 325
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=26.87 E-value=3.9e+02 Score=24.92 Aligned_cols=146 Identities=10% Similarity=-0.013 Sum_probs=74.4
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhH--HHHHHHHhhcCCChHHHHHHHcccCCC---ChhhHHHHHHHHHH
Q 008276 33 ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSI--GLKLMRTYGACGQMVDTRHVFDEITNK---NVVFFNVLIRSYVN 107 (571)
Q Consensus 33 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~ 107 (571)
+.+...+..|+++.++.++ +.|..++... ..+.+...+..|+.+-+..+++.-... +..-+ ..+...+.
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll-----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~ 89 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLL-----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAAR 89 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHH-----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHH-----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHH
Confidence 3455566778877555444 4555444221 123455566778888888777754432 22222 23444556
Q ss_pred cCChhHHHHHHHHHHhCCCCCCccc--HHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhCCCHHH
Q 008276 108 NYLYYDALHVYKNMSVHGFDPDCYT--YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF--NGNGLVAMYGKCGCLKE 183 (571)
Q Consensus 108 ~~~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~~ 183 (571)
.|+.+-+ +.+.+.|..|+... -...+...+..|+.+.+..++ +.+..++.. .-...+...+..|+.+-
T Consensus 90 ~g~~~~v----~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 161 (437)
T 1n11_A 90 IGHTNMV----KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVRV 161 (437)
T ss_dssp HTCHHHH----HHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred CCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence 6776543 33444454444321 112334445566666555444 444332211 11123445567788887
Q ss_pred HHHHHccCC
Q 008276 184 ARRVLNDMP 192 (571)
Q Consensus 184 A~~~~~~~~ 192 (571)
+..+++.-.
T Consensus 162 v~~Ll~~g~ 170 (437)
T 1n11_A 162 AELLLERDA 170 (437)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhCCC
Confidence 777776543
No 326
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=26.80 E-value=64 Score=20.51 Aligned_cols=33 Identities=6% Similarity=0.119 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHh-hcC
Q 008276 111 YYDALHVYKNMSVHGFDPDCYTYPCVLKAC-SGS 143 (571)
Q Consensus 111 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~ 143 (571)
.++|...|.+|++..--+...+|...++.+ ++-
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 367777887776654445667788777776 443
No 327
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.53 E-value=2.1e+02 Score=22.19 Aligned_cols=61 Identities=7% Similarity=0.092 Sum_probs=40.5
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhccCC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 008276 288 LQMEVHGIEPNAISVASVLPACGDLS-ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS 349 (571)
Q Consensus 288 ~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 349 (571)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 346677877776543 3444555555 567788888888887766666666666666766664
No 328
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=26.43 E-value=1.7e+02 Score=20.46 Aligned_cols=63 Identities=11% Similarity=-0.007 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHH
Q 008276 47 LKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDA 114 (571)
Q Consensus 47 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 114 (571)
...++..+. +.|+- +..-+..+-. .....++|.++++.++......|..++.++...+...-|
T Consensus 24 v~~lld~L~-~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMI-SDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHH-HHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHH-HCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 445677776 66644 3344444333 357778899999999988888999999999887764433
No 329
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.71 E-value=2e+02 Score=21.78 Aligned_cols=59 Identities=8% Similarity=0.141 Sum_probs=35.9
Q ss_pred HHHHCCCCCCHHHHHHHHHHhccCC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 008276 289 QMEVHGIEPNAISVASVLPACGDLS-ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348 (571)
Q Consensus 289 ~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (571)
.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 35567777765443 3344444444 56678888888887766666666555566666555
No 330
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.70 E-value=1.1e+02 Score=21.56 Aligned_cols=22 Identities=9% Similarity=0.169 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 008276 505 YVLLSNIYAKAGRWGDVKRVRK 526 (571)
Q Consensus 505 ~~~l~~~~~~~g~~~~A~~~~~ 526 (571)
+...++.+.+.|+|++|++..+
T Consensus 18 ~~RrAe~ll~~gkydeAIech~ 39 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHR 39 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHH
Confidence 3445555555566666554433
No 331
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.95 E-value=2.7e+02 Score=22.06 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC--C-CCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 008276 439 FACLVDLLGRAGKVEEAYDLIKQM--P-MEP--NERIWGSLVA-A-----CCLYSNMDIGILAADHIFH 496 (571)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~--~-~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 496 (571)
|..-+..| ..|++-+|.++++.. . -.+ ....|..||. . ..+.|+...|..++.++..
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33333334 459999999999887 2 123 4456777777 2 2368999999999999977
No 332
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.92 E-value=2.8e+02 Score=22.17 Aligned_cols=149 Identities=9% Similarity=0.036 Sum_probs=72.2
Q ss_pred HhhcCCChHHHHHHHcccC-C---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccH--HHHHHHhhcCCCh
Q 008276 73 TYGACGQMVDTRHVFDEIT-N---KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY--PCVLKACSGSNSL 146 (571)
Q Consensus 73 ~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~~~~ 146 (571)
..+..|+.+....++..-. . .+..-++. +...++.|+.+ +++.+.+.|..++.... ...+...+..|+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 85 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRT 85 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 3445677777777776544 2 22222333 33344556643 44444555655543321 1233334455666
Q ss_pred HHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCCCHHHHHHHHccC-CC---CCchhHHHHHHHHHhCCC-chHHHHHH
Q 008276 147 LVGLQIHCSVVKVGLDYNLFN--GNGLVAMYGKCGCLKEARRVLNDM-PS---KDVVTWNSMVAGYAQNGR-FDEALDVC 219 (571)
Q Consensus 147 ~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~g~-~~~a~~~~ 219 (571)
+-+..+++. .+..++... -...+...+..|+.+-+..+++.- .. ++..-++.+..+. ..++ ...-.+++
T Consensus 86 ~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~-~~~~~~~~~~~~v 161 (201)
T 3hra_A 86 EILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV-GLREGNQLYQDIV 161 (201)
T ss_dssp HHHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH-HSSCCSHHHHHHH
T ss_pred HHHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH-HhccchhhHHHHH
Confidence 554444432 222221110 112234455677887777777654 22 3333334444443 3443 34446677
Q ss_pred HHHHHCCCCCC
Q 008276 220 REMESLRIKPD 230 (571)
Q Consensus 220 ~~m~~~g~~p~ 230 (571)
+.+.+.|..++
T Consensus 162 ~~Ll~~ga~~~ 172 (201)
T 3hra_A 162 KLLMENGADQS 172 (201)
T ss_dssp HHHHHTTCCTT
T ss_pred HHHHHCCCCCC
Confidence 77777776665
No 333
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.28 E-value=1.5e+02 Score=23.50 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=46.3
Q ss_pred hHHHHHHHH-HHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhCCCH
Q 008276 112 YDALHVYKN-MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKV--GLDYNLFNGNGLVAMYGKCGCL 181 (571)
Q Consensus 112 ~~A~~~~~~-m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~g~~ 181 (571)
+.+++-+.+ +.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR~-~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQRE-VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444544443 4566777766543 5566677777788899999999887 6666666655566777777754
No 334
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.27 E-value=1.4e+02 Score=23.61 Aligned_cols=69 Identities=14% Similarity=0.051 Sum_probs=37.8
Q ss_pred HHHHHHHH-HHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCC
Q 008276 382 YDAVALFS-KMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY-KLVPRIEHFACLVDLLGRAGK 451 (571)
Q Consensus 382 ~~a~~~~~-~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 451 (571)
+.+++-+. .+.+.|++++..- ..++..+...+..-.|.++++.+.+.. +...+..|..--++.+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 33443333 3445677766653 334555666666677777777776531 123344444445566666664
No 335
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=23.12 E-value=3.2e+02 Score=22.56 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCChhHHHHHHH---HhhcC--C--------------ChHHHHHHHcccCCCChh------
Q 008276 42 PDIKTLKKLHAQIIINQHLHSNPSIGLKLMR---TYGAC--G--------------QMVDTRHVFDEITNKNVV------ 96 (571)
Q Consensus 42 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~--g--------------~~~~A~~~~~~~~~~~~~------ 96 (571)
+++...+.+.+.++ .|+.+-.......+. .+.+- | =++.|+.+|+.+.+--..
T Consensus 39 ~dFrq~rdi~eall--~~~~~~~a~~~k~i~icQfL~RI~eG~~LD~~Fd~d~~lTPLESAl~v~~~I~~e~~~lheei~ 116 (211)
T 3bqo_A 39 EDFRRTRNSAEAII--HGLSSLTACQLRTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQ 116 (211)
T ss_dssp HHHHHHHHHHHHHH--HTCSCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHTTSCSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hccccccccccchHHHHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHHHHHHhcccHHHHHH
Confidence 45666666666666 355444333333333 33321 2 246788888877652111
Q ss_pred --hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 008276 97 --FFNVLIRSYVNNYLYYDALHVYKNMSV 123 (571)
Q Consensus 97 --~~~~li~~~~~~~~~~~A~~~~~~m~~ 123 (571)
.--..+..|.+.|.+++|.++|++.-.
T Consensus 117 ~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 117 NLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 122334567788888888888887544
No 336
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.66 E-value=1.3e+02 Score=23.15 Aligned_cols=48 Identities=10% Similarity=0.239 Sum_probs=36.1
Q ss_pred hHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCCh
Q 008276 32 DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQM 80 (571)
Q Consensus 32 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 80 (571)
..++.++...+..-.|.++++.+. +.+...+..|...-+..+.+.|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~-~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLK-HKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHCCCE
Confidence 346667777777788888888887 777777777777778888877744
No 337
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.64 E-value=1.3e+02 Score=22.68 Aligned_cols=47 Identities=13% Similarity=0.302 Sum_probs=36.4
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCCh
Q 008276 33 ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQM 80 (571)
Q Consensus 33 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 80 (571)
.+..++...+..-.|.++++.+. +.+...+..|....+..+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~-~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELR-RRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHH-HTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HhCCCCCHhhHHHHHHHHHHCCCE
Confidence 45666777777888999999988 777777777878888888888743
No 338
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.72 E-value=1.9e+02 Score=22.03 Aligned_cols=18 Identities=6% Similarity=-0.064 Sum_probs=10.0
Q ss_pred HHHHhCCCHHHHHHHHcc
Q 008276 173 AMYGKCGCLKEARRVLND 190 (571)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~ 190 (571)
...+..|+.+-+..+++.
T Consensus 106 ~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 106 HLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHHHHTCHHHHHHHHTT
T ss_pred HHHHHhChHHHHHHHHhc
Confidence 334455666666666555
No 339
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.71 E-value=1.9e+02 Score=19.38 Aligned_cols=59 Identities=7% Similarity=0.126 Sum_probs=36.1
Q ss_pred HHHHCCCCCCHHHHHHHHHHhccCC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 008276 289 QMEVHGIEPNAISVASVLPACGDLS-ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348 (571)
Q Consensus 289 ~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (571)
.+.+.|++.+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 45567777765443 4445555443 45567777777777665556666666666666555
No 340
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=21.52 E-value=5.5e+02 Score=24.67 Aligned_cols=45 Identities=13% Similarity=-0.006 Sum_probs=22.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 008276 379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426 (571)
Q Consensus 379 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 426 (571)
.+.+-|.++. .+.|++--...|..-...+...|++++|.++--..
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~s 387 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANA 387 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 4444444333 23344434445555555566666666666655444
No 341
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=21.50 E-value=4.5e+02 Score=23.65 Aligned_cols=42 Identities=12% Similarity=0.106 Sum_probs=22.8
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCC
Q 008276 151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP 192 (571)
Q Consensus 151 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 192 (571)
+++..+.+.|+.|...+..-++..+.+.=.++.+.++++.+.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l 250 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIF 250 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555443
No 342
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.35 E-value=1.5e+02 Score=22.46 Aligned_cols=44 Identities=11% Similarity=0.051 Sum_probs=24.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 008276 371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414 (571)
Q Consensus 371 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 414 (571)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444445555666666666666555555555555555555544
No 343
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.98 E-value=2.8e+02 Score=21.52 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 008276 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG 348 (571)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (571)
..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 41 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 41 THLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34445555555554443444444444444444444
No 344
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.36 E-value=1.2e+02 Score=21.50 Aligned_cols=35 Identities=9% Similarity=0.200 Sum_probs=21.7
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHH
Q 008276 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283 (571)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 283 (571)
.+.++++++.+......+|..++.++...|+..-|
T Consensus 53 ~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 53 RDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 55566666666666666677777777655655444
No 345
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.19 E-value=3.6e+02 Score=22.10 Aligned_cols=19 Identities=5% Similarity=0.120 Sum_probs=11.9
Q ss_pred HHHhhcCCChHHHHHHHcc
Q 008276 71 MRTYGACGQMVDTRHVFDE 89 (571)
Q Consensus 71 ~~~~~~~g~~~~A~~~~~~ 89 (571)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4455556777777766654
Done!