Query 008279
Match_columns 571
No_of_seqs 182 out of 1466
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 21:47:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03167 Chaperonin-60 beta su 100.0 2E-114 3E-119 962.1 56.1 564 1-571 1-565 (600)
2 PRK12849 groEL chaperonin GroE 100.0 2E-108 4E-113 907.4 57.4 504 63-571 2-507 (542)
3 PRK12852 groEL chaperonin GroE 100.0 3E-108 6E-113 908.9 57.2 506 62-571 2-509 (545)
4 PRK00013 groEL chaperonin GroE 100.0 3E-108 7E-113 905.6 56.7 505 63-571 2-508 (542)
5 TIGR02348 GroEL chaperonin Gro 100.0 2E-107 5E-112 897.6 56.6 503 64-571 2-506 (524)
6 PTZ00114 Heat shock protein 60 100.0 3E-107 6E-112 902.0 56.8 506 63-571 14-524 (555)
7 PRK12850 groEL chaperonin GroE 100.0 2E-107 5E-112 899.9 55.9 505 62-571 2-508 (544)
8 cd03344 GroEL GroEL_like type 100.0 4E-107 8E-112 894.6 57.2 503 64-571 1-505 (520)
9 CHL00093 groEL chaperonin GroE 100.0 7E-107 1E-111 895.0 55.7 504 63-571 2-509 (529)
10 PRK12851 groEL chaperonin GroE 100.0 8E-107 2E-111 895.1 56.3 505 62-571 2-508 (541)
11 PRK14104 chaperonin GroEL; Pro 100.0 3E-106 7E-111 890.5 55.9 505 63-571 3-509 (546)
12 KOG0356 Mitochondrial chaperon 100.0 7E-99 2E-103 788.3 40.8 503 63-571 16-521 (550)
13 TIGR02339 thermosome_arch ther 100.0 5.6E-88 1.2E-92 745.8 47.7 440 66-571 11-504 (519)
14 cd03343 cpn60 cpn60 chaperonin 100.0 1.4E-87 3.1E-92 742.8 48.0 441 65-571 9-501 (517)
15 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 4.6E-88 1E-92 739.4 42.5 430 72-571 11-467 (484)
16 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.8E-87 3.9E-92 742.6 47.2 441 72-571 7-510 (527)
17 TIGR02347 chap_CCT_zeta T-comp 100.0 4.2E-87 9E-92 737.9 47.9 436 72-571 15-510 (531)
18 cd03339 TCP1_epsilon TCP-1 (CT 100.0 6.9E-87 1.5E-91 737.8 47.6 441 65-571 17-512 (526)
19 TIGR02340 chap_CCT_alpha T-com 100.0 8E-87 1.7E-91 738.4 46.5 441 72-571 11-514 (536)
20 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.6E-86 3.4E-91 733.9 46.2 443 72-571 7-500 (515)
21 COG0459 GroL Chaperonin GroEL 100.0 3.3E-88 7.1E-93 738.3 31.7 479 62-571 2-498 (524)
22 TIGR02343 chap_CCT_epsi T-comp 100.0 3.5E-86 7.5E-91 731.8 46.7 436 72-571 26-516 (532)
23 TIGR02344 chap_CCT_gamma T-com 100.0 4.2E-86 9.2E-91 731.7 46.3 436 72-571 15-506 (525)
24 TIGR02342 chap_CCT_delta T-com 100.0 4.2E-86 9.1E-91 729.8 45.7 443 72-571 8-501 (517)
25 cd03340 TCP1_eta TCP-1 (CTT or 100.0 7.9E-86 1.7E-90 729.1 47.9 439 72-571 15-504 (522)
26 cd03336 TCP1_beta TCP-1 (CTT o 100.0 4.5E-85 9.8E-90 721.5 49.3 435 72-571 12-498 (517)
27 TIGR02345 chap_CCT_eta T-compl 100.0 2.4E-85 5.3E-90 724.4 47.1 438 72-571 17-504 (522)
28 PTZ00212 T-complex protein 1 s 100.0 5E-85 1.1E-89 723.2 48.2 435 72-571 21-510 (533)
29 cd03337 TCP1_gamma TCP-1 (CTT 100.0 8.6E-85 1.9E-89 713.3 43.1 419 72-571 15-465 (480)
30 TIGR02346 chap_CCT_theta T-com 100.0 1.2E-84 2.6E-89 719.4 43.1 435 72-571 17-504 (531)
31 TIGR02341 chap_CCT_beta T-comp 100.0 1.6E-83 3.5E-88 708.7 48.8 435 72-571 13-499 (519)
32 cd03341 TCP1_theta TCP-1 (CTT 100.0 2.5E-83 5.5E-88 700.4 44.8 422 71-571 6-456 (472)
33 cd00309 chaperonin_type_I_II c 100.0 8.4E-83 1.8E-87 696.5 46.9 424 65-571 2-450 (464)
34 KOG0361 Chaperonin complex com 100.0 3.6E-82 7.7E-87 634.0 32.1 436 74-570 21-506 (543)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 4.7E-76 1E-80 646.6 43.7 423 85-571 1-468 (485)
36 KOG0358 Chaperonin complex com 100.0 1.8E-76 4E-81 591.9 27.2 441 72-570 25-517 (534)
37 KOG0363 Chaperonin complex com 100.0 4.4E-75 9.5E-80 579.5 31.8 434 72-570 17-502 (527)
38 KOG0360 Chaperonin complex com 100.0 9.4E-69 2E-73 549.9 24.3 440 72-571 18-520 (545)
39 KOG0362 Chaperonin complex com 100.0 2.4E-66 5.1E-71 535.7 38.3 437 70-571 23-505 (537)
40 KOG0364 Chaperonin complex com 100.0 1.5E-66 3.2E-71 529.2 21.5 431 77-571 23-505 (527)
41 KOG0359 Chaperonin complex com 100.0 6.5E-62 1.4E-66 494.6 22.3 433 74-570 18-498 (520)
42 KOG0357 Chaperonin complex com 100.0 6E-59 1.3E-63 460.6 18.9 354 58-570 15-379 (400)
43 cd03333 chaperonin_like chaper 100.0 2.1E-27 4.7E-32 233.1 21.1 191 204-470 3-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.9 3.6E-26 7.7E-31 231.5 20.7 199 215-471 19-254 (261)
45 KOG0230 Phosphatidylinositol-4 99.0 1.5E-09 3.2E-14 126.6 13.8 206 216-480 334-577 (1598)
46 COG0459 GroL Chaperonin GroEL 97.2 0.00058 1.2E-08 76.0 6.8 89 294-398 259-354 (524)
47 smart00574 POX domain associat 46.8 88 0.0019 28.8 7.2 59 420-491 69-128 (140)
48 TIGR02345 chap_CCT_eta T-compl 41.8 8 0.00017 43.5 -0.3 60 305-365 247-315 (522)
49 COG1433 Uncharacterized conser 37.2 1.3E+02 0.0028 27.0 6.8 41 297-345 57-97 (121)
50 PF07526 POX: Associated with 36.9 1.3E+02 0.0028 27.7 6.9 58 421-491 70-128 (140)
51 PRK13600 putative ribosomal pr 26.4 2.9E+02 0.0062 23.2 6.6 54 297-360 21-74 (84)
No 1
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.5e-114 Score=962.11 Aligned_cols=564 Identities=90% Similarity=1.231 Sum_probs=536.2
Q ss_pred CcccccccccccccccCCCcccchhcccccccccccccccccccccccchhcccccccccccccccccCCcHHHHHHHHH
Q 008279 1 MASTFTAMSSISSMIAPNGRMTDKKLASSSNKLSSLASISSSSFGRRQSVALRRARTPKIYAAKDLHFNKDGYAMKKLQN 80 (571)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~r~~~~~ 80 (571)
|||++.+.++.++..++... ++.+.++|...++..+|+++++.+.|++..++..|+|++.||.+.++|+.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ar~~l~~ 73 (600)
T PLN03167 1 MASTFTATSSVGSLAAPNGH-------KSDNRLSSFASISSSSFGRRQSVRLRRSRSPKVKAAKELHFNKDGSAIKKLQA 73 (600)
T ss_pred CcchhhhhhhhcCccccccc-------ccccccccccccccccccccccccccccCCchhhhcceeecCCcHHHHHHHHH
Confidence 88998888888888877544 45577888888999999877776677777777777999999933379999999
Q ss_pred HHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcccHHHHHHHH
Q 008279 81 GVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG 160 (571)
Q Consensus 81 ~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGTTt~vvLa~~ 160 (571)
|+..|+++|+|||||+||+|||++++|+|+|||||+||+|+|+++||++|+||+|++++|++||+++||||||++||+++
T Consensus 74 g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~evGDGTTTvvVLa~~ 153 (600)
T PLN03167 74 GVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG 153 (600)
T ss_pred HHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhhhhCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHhhcCCchHHHHHHHHHHHhhccCCceEEec
Q 008279 161 LIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 240 (571)
Q Consensus 161 Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~L~~va~ts~~~~~~ls~li~~Av~~v~~~g~I~i~~ 240 (571)
||+++.+++++|+||..|++||++|.+.+++.|+++++|+++.+|.++|++|+++++.|++|+++|+.+++++|.|.+++
T Consensus 154 LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~ 233 (600)
T PLN03167 154 LIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE 233 (600)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEecc
Confidence 99999999999999999999999999999999999999997558999999999999999999999999999989999999
Q ss_pred CCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCCCHHHHHHHHHHHHHcCCCeEEEcccccHHHH
Q 008279 241 GKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEAL 320 (571)
Q Consensus 241 G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~~~~~l~~~le~i~~~g~~lvI~~~~i~~~aL 320 (571)
|++++|++++++|++|+++|.+|||++++++|+++++||+|+++|++|++++++.++++.+.+.|+||||++++|++++|
T Consensus 234 g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL 313 (600)
T PLN03167 234 GKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEAL 313 (600)
T ss_pred CCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHH
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecccCccccCCCCCCceeeeEEEEecceEEEEcCCCCh
Q 008279 321 ATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQ 400 (571)
Q Consensus 321 ~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~i~~~~~~ 400 (571)
++|+.|+++|.++++|||+|+||+.++++|+|||++|||++++++.|++++++++++||+|++|++.++.++++++.+++
T Consensus 314 ~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~ 393 (600)
T PLN03167 314 ATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQ 393 (600)
T ss_pred HHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccH
Confidence 99999999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHh
Q 008279 401 DAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 480 (571)
Q Consensus 401 ~~i~~ri~~l~~~~~~~~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~gvVpGGGa~e 480 (571)
+.+.+|+.+|+..++.+.++|+++++++|+++|++++++|+|||+|+.+++|+||+++||++++|+++++|+|||||++|
T Consensus 394 ~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~e 473 (600)
T PLN03167 394 EAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL 473 (600)
T ss_pred HHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCchhhHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCceeEEcCCCcccchhhcCcccc
Q 008279 481 LRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDP 560 (571)
Q Consensus 481 ~~ls~~L~~~~~~~~~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~~~~~Gid~~~~~i~d~~~~gI~Dp 560 (571)
++++.+|++++.+.++.+|+.+++++++||+.||++||+|||+|+.+++.+|++.++.++|||+.+|++.||++.|||||
T Consensus 474 l~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp 553 (600)
T PLN03167 474 LRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDP 553 (600)
T ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhccCeec
Confidence 99999999998778899998889999999999999999999999999999998666778999999999999999999999
Q ss_pred hhHH-HHHHhcC
Q 008279 561 TKVS-CCIAIAL 571 (571)
Q Consensus 561 ~~vk-~~l~~A~ 571 (571)
+.|| ++|++|+
T Consensus 554 ~~Vk~~al~~A~ 565 (600)
T PLN03167 554 TKVVRCCLEHAA 565 (600)
T ss_pred HHHHHHHHHHHH
Confidence 9999 9999884
No 2
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.9e-108 Score=907.38 Aligned_cols=504 Identities=59% Similarity=0.898 Sum_probs=488.4
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHh
Q 008279 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (571)
Q Consensus 63 ~k~i~~~~~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 142 (571)
+|.|+|| +++|+.+++|+..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||.+|+||+|++++|++
T Consensus 2 ~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~ 79 (542)
T PRK12849 2 AKIIKFD--EEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASK 79 (542)
T ss_pred Cccccch--HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHh
Confidence 6899999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCch-HHHHHHHhhcCCchHHHH
Q 008279 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (571)
Q Consensus 143 q~~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls~ 221 (571)
||+++||||||+|+|+++||+++.+++++|+||..|++||++|++.++++|+++++|+++. +|.++|.||++++++|++
T Consensus 80 qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~ 159 (542)
T PRK12849 80 TNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGE 159 (542)
T ss_pred cCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876 899999999999999999
Q ss_pred HHHHHHHhhccCCceEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCCCHHHHHHHHHHH
Q 008279 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301 (571)
Q Consensus 222 li~~Av~~v~~~g~I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~~~~~l~~~le~i 301 (571)
++++|+..++++|.|.++.|++++|++++++|++|+++|.+|||.++.++|+++++||+|+++|+++++++++.++++++
T Consensus 160 lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i 239 (542)
T PRK12849 160 LIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKV 239 (542)
T ss_pred HHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHH
Confidence 99999999998888888899999986699999999999999999998888999999999999999999999999999999
Q ss_pred HHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecccCccccCCCCCCceee
Q 008279 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNA 381 (571)
Q Consensus 302 ~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~ 381 (571)
.+.|+||||++++|+++|+++|+.|+++|.++|+|||+|+++++++.+|+|||.+|||++++++.+.+++++++++||+|
T Consensus 240 ~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~ 319 (542)
T PRK12849 240 AQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRA 319 (542)
T ss_pred HHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred eEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHH
Q 008279 382 SKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDAL 461 (571)
Q Consensus 382 ~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl 461 (571)
++|++++++|++++++++++++..|+++++++++++.++|++++|+||+++|+++++||+|||+|+.+++|++|+++||+
T Consensus 320 ~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl 399 (542)
T PRK12849 320 KRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDAL 399 (542)
T ss_pred eEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCcee
Q 008279 462 NATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYG 541 (571)
Q Consensus 462 ~~~r~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~~~~~G 541 (571)
|++++++++|||||||++|++++.+|++++ +.++++| +++++|++||+.||++||+|||+|+.+++.+|++.+ +++|
T Consensus 400 ~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~-~~~g~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-~~~G 476 (542)
T PRK12849 400 NATRAAVEEGIVPGGGVALLRAAKALDELA-GLNGDQA-AGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-DGFG 476 (542)
T ss_pred HHHHHHHHcCeecCCCHHHHHHHHHHHHhh-CCChHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-CCcc
Confidence 999999999999999999999999999988 6777665 899999999999999999999999999999998764 5799
Q ss_pred EEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 542 YNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 542 id~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
||+.+|++.||++.|||||+.|| ++|++|+
T Consensus 477 ~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~ 507 (542)
T PRK12849 477 FNAATGEYGDLIAAGIIDPVKVTRSALQNAA 507 (542)
T ss_pred eeCCCCccccHHhccCccCHHHHHHHHHHHH
Confidence 99999999999999999999999 9999884
No 3
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.8e-108 Score=908.92 Aligned_cols=506 Identities=54% Similarity=0.847 Sum_probs=488.7
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHH
Q 008279 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (571)
Q Consensus 62 ~~k~i~~~~~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 141 (571)
++|.|.|| +++|+.+++|+..|+++|+|||||+||+|||+++.|+|+|||||+||+++|+++||++++||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~ 79 (545)
T PRK12852 2 AAKDVKFS--GDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVAS 79 (545)
T ss_pred Ccchhhcc--HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHh
Confidence 47999999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCch-HHHHHHHhhcCCchHHH
Q 008279 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (571)
Q Consensus 142 ~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls 220 (571)
+||+++||||||+|+||++||+++.+++++|+||..|++||++|++.++++|+++++|+++. ++.++|++|+++++.|+
T Consensus 80 ~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~ 159 (545)
T PRK12852 80 KTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIG 159 (545)
T ss_pred hcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999998899999
Q ss_pred HHHHHHHHhhccCCceEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCCCHHHHHHHHHH
Q 008279 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300 (571)
Q Consensus 221 ~li~~Av~~v~~~g~I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~~~~~l~~~le~ 300 (571)
+++++|+.+++++|.|.++.|++..+.+++++|+.|++||.+|||++++++|+++++||+|+++|++++++++++++|+.
T Consensus 160 ~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~ 239 (545)
T PRK12852 160 KMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEA 239 (545)
T ss_pred HHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHH
Confidence 99999999999999999999988755559999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecccCccccCCCCCCcee
Q 008279 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN 380 (571)
Q Consensus 301 i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~ 380 (571)
+.+.|+||||++++|+++||++|+.|+++|.++|+|||+|+||+.++++|+|||++|||++++++.|++++++++++||+
T Consensus 240 i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~ 319 (545)
T PRK12852 240 VVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGR 319 (545)
T ss_pred HHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred eeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHH
Q 008279 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (571)
Q Consensus 381 ~~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DA 460 (571)
|+.|++++++++++++++++..+..|+++++.+++++.+.|++++|+||+++|+++++||+|||+|+.+++|+||+++||
T Consensus 320 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DA 399 (545)
T PRK12852 320 AKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDA 399 (545)
T ss_pred CcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCce
Q 008279 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKY 540 (571)
Q Consensus 461 l~~~r~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~~~~~ 540 (571)
+|++++++++|||||||++|++++++|++++.. .+.+ ++++++|++||+.||++||+|||+|+.+++++|++.|++++
T Consensus 400 l~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~-~~~~-q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~~~ 477 (545)
T PRK12852 400 LNATRAAVQEGIVPGGGVALLRAKKAVGRINND-NADV-QAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETF 477 (545)
T ss_pred HHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcC-CcHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCe
Confidence 999999999999999999999999999998765 5554 59999999999999999999999999999999988778889
Q ss_pred eEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 541 GYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 541 Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
|||+.+|++.||++.|||||+.|| ++|++|+
T Consensus 478 G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~ 509 (545)
T PRK12852 478 GFDAQTEEYVDMVAKGIIDPAKVVRTALQDAA 509 (545)
T ss_pred eEeCcCCCcccHHhCcCCcChHHHHHHHHHHH
Confidence 999999999999999999999999 9999984
No 4
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.2e-108 Score=905.60 Aligned_cols=505 Identities=62% Similarity=0.910 Sum_probs=485.3
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHh
Q 008279 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (571)
Q Consensus 63 ~k~i~~~~~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 142 (571)
+|.+.|| +++|+.+++|+..++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++++||+|++++|++
T Consensus 2 ~~~~~~~--~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~ 79 (542)
T PRK00013 2 AKDIKFG--EDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASK 79 (542)
T ss_pred Cchhhch--HHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHh
Confidence 6889999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCch-HHHHHHHhhcCCchHHHH
Q 008279 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (571)
Q Consensus 143 q~~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls~ 221 (571)
||+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. +|.++|.||+++++.+++
T Consensus 80 qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~ 159 (542)
T PRK00013 80 TNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGK 159 (542)
T ss_pred cCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876 899999999999999999
Q ss_pred HHHHHHHhhccCCceEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCCCHHHHHHHHHHH
Q 008279 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301 (571)
Q Consensus 222 li~~Av~~v~~~g~I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~~~~~l~~~le~i 301 (571)
++++|+..++++|.|.++.+....|.+++++|++|+++|.+|||.+++++|+++++||+||++|+++++++++.++++++
T Consensus 160 lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i 239 (542)
T PRK00013 160 LIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQV 239 (542)
T ss_pred HHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHH
Confidence 99999999998888887655544444599999999999999999999889999999999999999999999999999999
Q ss_pred HHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecccCccccCCCCCCceee
Q 008279 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNA 381 (571)
Q Consensus 302 ~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~ 381 (571)
.+.|+||||++++|+++++++|+.|+++|+++|+|||+|+||+.++++|+|||++|||++++++.|++++++++++||+|
T Consensus 240 ~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~ 319 (542)
T PRK00013 240 AQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQA 319 (542)
T ss_pred HHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred eEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHH
Q 008279 382 SKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDAL 461 (571)
Q Consensus 382 ~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl 461 (571)
+.|++++++|++|+++++++.+..|+++++.+++++.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++||+
T Consensus 320 ~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal 399 (542)
T PRK00013 320 KKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDAL 399 (542)
T ss_pred eEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCcee
Q 008279 462 NATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYG 541 (571)
Q Consensus 462 ~~~r~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~~~~~G 541 (571)
|++|+++++|+|||||++|++++++|+++ .+.++.+| +++++|++||+.||++||+|||+|+.+++.+|++.|++++|
T Consensus 400 ~~vk~al~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G 477 (542)
T PRK00013 400 HATRAAVEEGIVPGGGVALLRAAPALEAL-KGLNGDEA-TGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGKGKGYG 477 (542)
T ss_pred HHHHHHHHcCcccCcHHHHHHHHHHHHHh-cCCChHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCEe
Confidence 99999999999999999999999999988 56666665 89999999999999999999999999999999876777899
Q ss_pred EEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 542 YNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 542 id~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
||+.+|++.||++.|||||+.|| ++|++|+
T Consensus 478 ~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~ 508 (542)
T PRK00013 478 YNAATGEYVDMIEAGIIDPTKVTRSALQNAA 508 (542)
T ss_pred EeCCCCceeehhhccCeecHHHHHHHHHHHH
Confidence 99999999999999999999999 9999884
No 5
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=2.5e-107 Score=897.57 Aligned_cols=503 Identities=61% Similarity=0.907 Sum_probs=485.1
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhc
Q 008279 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143 (571)
Q Consensus 64 k~i~~~~~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q 143 (571)
|.+.|+ +++|+.+++|+..++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++|+||+|++++|++|
T Consensus 2 ~~~~~~--~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~q 79 (524)
T TIGR02348 2 KQIKFD--EEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKT 79 (524)
T ss_pred cccccc--HHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHcc
Confidence 678999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCch-HHHHHHHhhcCCchHHHHH
Q 008279 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNM 222 (571)
Q Consensus 144 ~~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls~l 222 (571)
|+++||||||+|+|+++||+++.+++++|+||..|++||+.|++.++++|+++++|+++. +|.++|++|++++++++++
T Consensus 80 d~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~l 159 (524)
T TIGR02348 80 NDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSL 159 (524)
T ss_pred CceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 8999999999999999999
Q ss_pred HHHHHHhhccCCceEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCCCHHHHHHHHHHHH
Q 008279 223 IAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAI 302 (571)
Q Consensus 223 i~~Av~~v~~~g~I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~~~~~l~~~le~i~ 302 (571)
+++|+..+++++.|.++.|+..+|.+++++|++|+++|.+|||.+++++|++.++||+||++|+++++++++.++++++.
T Consensus 160 v~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~ 239 (524)
T TIGR02348 160 IAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVA 239 (524)
T ss_pred HHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHH
Confidence 99999999998888888898887766999999999999999999988899999999999999999999999999999999
Q ss_pred HcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecccCccccCCCCCCceeee
Q 008279 303 RGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNAS 382 (571)
Q Consensus 303 ~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~ 382 (571)
+.|+||||++++|+++|+++|+.|+++|+++++|||+|++++.++++|+|||++|||++++++.|++++++++++||+|+
T Consensus 240 ~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~ 319 (524)
T TIGR02348 240 QSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAK 319 (524)
T ss_pred HhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred EEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHH
Q 008279 383 KVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALN 462 (571)
Q Consensus 383 ~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~ 462 (571)
.|++.++.+++++++++++.+..|+.+++++++++.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++||+|
T Consensus 320 ~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~ 399 (524)
T TIGR02348 320 KVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALN 399 (524)
T ss_pred EEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCceeE
Q 008279 463 ATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGY 542 (571)
Q Consensus 463 ~~r~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~~~~~Gi 542 (571)
++|+++++|||||||++|++++.+|++ ..+.++.++ +++++|++||+.||++||+|||+|+.+++++|++. +.++||
T Consensus 400 ~~r~a~~~g~VpGGGa~e~~~s~~L~~-~~~~~~~~~-~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~ 476 (524)
T TIGR02348 400 ATRAAVEEGIVPGGGVALLRAAAALEG-LKGDNEDEA-IGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES-KGNFGF 476 (524)
T ss_pred HHHHHHhcCCccCCcHHHHHHHHHHHH-hccCChHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc-CCCeeE
Confidence 999999999999999999999999998 556666555 89999999999999999999999999999999865 335999
Q ss_pred EcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 543 NAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 543 d~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
|+.+|++.||++.|||||+.|| ++|++|+
T Consensus 477 d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~ 506 (524)
T TIGR02348 477 NAATGEYEDLVEAGIIDPTKVTRSALQNAA 506 (524)
T ss_pred eCcCCcccchhhccCEEcHHHHHHHHHHHH
Confidence 9999999999999999999999 9999984
No 6
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=2.8e-107 Score=901.98 Aligned_cols=506 Identities=52% Similarity=0.842 Sum_probs=486.9
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHh
Q 008279 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (571)
Q Consensus 63 ~k~i~~~~~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 142 (571)
++++.|+ +++|..+++||..|+++|+|||||+||+|||++++|+|+|||||+||+|+|+++||.+++||+|++++|++
T Consensus 14 ~~~~~~~--~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~ 91 (555)
T PTZ00114 14 GKEIRFG--DEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASK 91 (555)
T ss_pred hhhhhhH--HHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHh
Confidence 5678888 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCch-HHHHHHHhhcCCchHHHH
Q 008279 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (571)
Q Consensus 143 q~~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls~ 221 (571)
||+++||||||+||||++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. +|.++|+||+++++.|++
T Consensus 92 qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~ 171 (555)
T PTZ00114 92 TNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGS 171 (555)
T ss_pred hccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876 899999999998999999
Q ss_pred HHHHHHHhhccCCceEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCCCHHHHHHHHHHH
Q 008279 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301 (571)
Q Consensus 222 li~~Av~~v~~~g~I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~~~~~l~~~le~i 301 (571)
++++|+.+++++|.|.+++|++++|++++++|++|+++|.+|||++++++|+++++||+||++|++|++++++.++++++
T Consensus 172 li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i 251 (555)
T PTZ00114 172 LIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHA 251 (555)
T ss_pred HHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 99999999999899999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecc-cCccccCCCCCCcee
Q 008279 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDE-VGLALDKVGKEVLGN 380 (571)
Q Consensus 302 ~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~-~~~~~~~~~~~~lG~ 380 (571)
.+.|+||||++++|+++|+++|..|+++|.++|+|||+|++|++++++|+|||++|||+++++. .+..++++++++||+
T Consensus 252 ~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~ 331 (555)
T PTZ00114 252 VKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGS 331 (555)
T ss_pred HHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999986 666778899999999
Q ss_pred eeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHH
Q 008279 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (571)
Q Consensus 381 ~~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DA 460 (571)
|++|+++++++++++++++++.|+.|+.+++.+++...++|++++|+||+++|+++++||+|||+|+.+++|++|+++||
T Consensus 332 a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Da 411 (555)
T PTZ00114 332 AKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDA 411 (555)
T ss_pred CceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccchhHhhHHHHHHHHHhh--cCCchhhHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCC
Q 008279 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKE--TLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNH 538 (571)
Q Consensus 461 l~~~r~al~~gvVpGGGa~e~~ls~~L~~~~~--~~~~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~~~ 538 (571)
+|++++++++|||||||++|+++|.+|++++. +.+++++ +++++|++||+.||++||+|||+|+.+++++|++.+++
T Consensus 412 l~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~-~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~~~ 490 (555)
T PTZ00114 412 LNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQR-TGVKIVRNALRLPTKQIAENAGVEGAVVVEKILEKKDP 490 (555)
T ss_pred HHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Confidence 99999999999999999999999999998875 4556555 89999999999999999999999999999999764567
Q ss_pred ceeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 539 KYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 539 ~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
++|||+.+|++.||++.|||||+.|| ++|++|+
T Consensus 491 ~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~ 524 (555)
T PTZ00114 491 SFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAA 524 (555)
T ss_pred CEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHH
Confidence 89999999999999999999999999 9999984
No 7
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.3e-107 Score=899.91 Aligned_cols=505 Identities=56% Similarity=0.861 Sum_probs=485.0
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHH
Q 008279 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (571)
Q Consensus 62 ~~k~i~~~~~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 141 (571)
|+|.++|+ +++|+.+++|+..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||++|+||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~ 79 (544)
T PRK12850 2 AAKEIRFS--TDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVAS 79 (544)
T ss_pred Ccceeccc--HHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHh
Confidence 47999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCch-HHHHHHHhhcCCchHHH
Q 008279 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (571)
Q Consensus 142 ~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls 220 (571)
+||+++||||||+|+|+++||+++.+++++|+||..|++||+.|++.++++|+++++|+++. +|.++|++|+++++.|+
T Consensus 80 ~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~ 159 (544)
T PRK12850 80 KTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIG 159 (544)
T ss_pred hhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCCCHHHHHHHHHH
Q 008279 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300 (571)
Q Consensus 221 ~li~~Av~~v~~~g~I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~~~~~l~~~le~ 300 (571)
+++++|+..++++|.|.++.+....+.+++++|++|+++|.+|||+++.++|+.+++||+||++|+++++.+++.+++++
T Consensus 160 ~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~ 239 (544)
T PRK12850 160 EMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEA 239 (544)
T ss_pred HHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHH
Confidence 99999999999888888876665666669999999999999999999888999999999999999999999999999999
Q ss_pred HHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecccCccccCCCCCCcee
Q 008279 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN 380 (571)
Q Consensus 301 i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~ 380 (571)
+.+.|+||||++++|+++++++|+.|+++|.++++|||+|+||++++++|+|||++|||++++++.+++++++++++||+
T Consensus 240 i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~ 319 (544)
T PRK12850 240 VVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGR 319 (544)
T ss_pred HHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred eeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHH
Q 008279 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (571)
Q Consensus 381 ~~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DA 460 (571)
|++|++.+++|++++++++++.+..|+.+++++++++.++|++++|+||+++|+++++||+|||+|+.+++|++|+++||
T Consensus 320 ~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DA 399 (544)
T PRK12850 320 AKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDA 399 (544)
T ss_pred CcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCce
Q 008279 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKY 540 (571)
Q Consensus 461 l~~~r~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~~~~~ 540 (571)
++++|+++++|||||||++|++++..|+++ .+.++++| +++++|++||+.||++||+|||+|+.+++++|++.+ .++
T Consensus 400 l~~~k~a~~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-~~~ 476 (544)
T PRK12850 400 LHATRAAVEEGIVPGGGVALLRARSALRGL-KGANADET-AGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP-GNF 476 (544)
T ss_pred HHHHHHHHhcCCccCCcHHHHHHHHHHHhc-cCCChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCc
Confidence 999999999999999999999999999988 45666655 899999999999999999999999999999997764 578
Q ss_pred eEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 541 GYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 541 Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
|||+.+|++.||++.|||||+.|| ++|++|+
T Consensus 477 G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~ 508 (544)
T PRK12850 477 GFNAQTGEYGDMVEAGIIDPAKVTRTALQDAA 508 (544)
T ss_pred ceeCCCCcccchhhccCcccHHHHHHHHHHHH
Confidence 999999999999999999999999 9999884
No 8
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3.8e-107 Score=894.62 Aligned_cols=503 Identities=62% Similarity=0.928 Sum_probs=486.7
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhc
Q 008279 64 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 143 (571)
Q Consensus 64 k~i~~~~~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q 143 (571)
|.+.|| +++|+.+++|+..|+++|+|||||+||+|||++++|+|+|||||+||+++|+++||.+++||+|++++|++|
T Consensus 1 ~~~~~g--~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~q 78 (520)
T cd03344 1 KDIKFG--EEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKT 78 (520)
T ss_pred Ccccch--HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhh
Confidence 467899 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCch-HHHHHHHhhcCCchHHHHH
Q 008279 144 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNM 222 (571)
Q Consensus 144 ~~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls~l 222 (571)
|+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. +|.++|.|+++++++++++
T Consensus 79 d~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~l 158 (520)
T cd03344 79 NDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGEL 158 (520)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 8999999999999999999
Q ss_pred HHHHHHhhccCCceEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCCCHHHHHHHHHHHH
Q 008279 223 IAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAI 302 (571)
Q Consensus 223 i~~Av~~v~~~g~I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~~~~~l~~~le~i~ 302 (571)
+++|+..++++|.|.+++|++++|++++++|++|+++|.+|+|.+++++|+++++||+|+++|+++++++++.++++++.
T Consensus 159 v~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~ 238 (520)
T cd03344 159 IAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVA 238 (520)
T ss_pred HHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999988888889999999966999999999999999999998899999999999999999999999999999999
Q ss_pred HcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecccCccccCCCCCCceeee
Q 008279 303 RGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNAS 382 (571)
Q Consensus 303 ~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~ 382 (571)
+.|+||||++++|+++++++|..|+++|.++++|||+|++|++++++|+|||++|||++++++.+++++++++++||+|+
T Consensus 239 ~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~ 318 (520)
T cd03344 239 KAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAK 318 (520)
T ss_pred hhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHH
Q 008279 383 KVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALN 462 (571)
Q Consensus 383 ~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~ 462 (571)
+|++++++++++++++++++++.|+++++++++++.++|++++|+||+++|+|++|||+|||+|+.+++|++|+++||+|
T Consensus 319 ~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~ 398 (520)
T cd03344 319 KVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALN 398 (520)
T ss_pred EEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCceeE
Q 008279 463 ATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGY 542 (571)
Q Consensus 463 ~~r~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~~~~~Gi 542 (571)
++++++++|+|||||++|++++++|++++. .+++++ +++++|++||+.||++||+|||+|+.+++++|++.++ ++||
T Consensus 399 ~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~-~~~~~~-~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~-~~G~ 475 (520)
T cd03344 399 ATRAAVEEGIVPGGGVALLRASPALDKLKA-LNGDEK-LGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD-GFGY 475 (520)
T ss_pred HHHHHHhcCCCcCCcHHHHHHHHHHHHhcc-CChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC-CEeE
Confidence 999999999999999999999999999886 666655 8999999999999999999999999999999987666 8999
Q ss_pred EcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 543 NAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 543 d~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
|+.+|++.||++.|||||+.|| ++|++|+
T Consensus 476 d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~ 505 (520)
T cd03344 476 DAATGEYVDMIEAGIIDPTKVVRSALQNAA 505 (520)
T ss_pred ECCCCcccchHhccCeecHHHHHHHHHHHH
Confidence 9999999999999999999999 9999884
No 9
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=6.8e-107 Score=894.98 Aligned_cols=504 Identities=56% Similarity=0.868 Sum_probs=483.2
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHh
Q 008279 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (571)
Q Consensus 63 ~k~i~~~~~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 142 (571)
+|.+.|+ +++|+++++||..++++|+|||||+||+|||+++.|+|+|||||+||+|+|+++||++++|++|++++|.+
T Consensus 2 ~~~~~~~--~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~ 79 (529)
T CHL00093 2 SKKILYQ--DNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASK 79 (529)
T ss_pred CceeecC--HHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHh
Confidence 6899999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCch-HHHHHHHhhcCCchHHHH
Q 008279 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (571)
Q Consensus 143 q~~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls~ 221 (571)
|++++||||||+|||+++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++. +|.+||++|+++++.|++
T Consensus 80 ~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~ 159 (529)
T CHL00093 80 TNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGS 159 (529)
T ss_pred cCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876 899999999999999999
Q ss_pred HHHHHHHhhccCCceEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCCCH-HHHHHHHHH
Q 008279 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNA-RDLINVLED 300 (571)
Q Consensus 222 li~~Av~~v~~~g~I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~~~-~~l~~~le~ 300 (571)
|+++|+.+++++|.|.++.|+..++.+++++|++|+++|.+|||++++++|+++++||+|+++|++|+.. .+++++++.
T Consensus 160 lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~ 239 (529)
T CHL00093 160 MIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQ 239 (529)
T ss_pred HHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHHH
Confidence 9999999999889888877766666669999999999999999999999999999999999999999987 789999999
Q ss_pred HHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecccCccccCCCCCCcee
Q 008279 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN 380 (571)
Q Consensus 301 i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~ 380 (571)
+.+.|+||||++++|++++|++|+.|+.+|+++|+|||+|+++++++++|+|||++|||++++++.|++++++++++||+
T Consensus 240 i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~ 319 (529)
T CHL00093 240 VTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQ 319 (529)
T ss_pred HHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred eeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHH
Q 008279 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (571)
Q Consensus 381 ~~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DA 460 (571)
|+.|+++++++++++ .++++.+..||.+++++++.+.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++||
T Consensus 320 ~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DA 398 (529)
T CHL00093 320 ARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDA 398 (529)
T ss_pred ceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHH
Confidence 999999999999998 6778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccchhHhhHHHHHHHHHhh-cCCchhhHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCc
Q 008279 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKE-TLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHK 539 (571)
Q Consensus 461 l~~~r~al~~gvVpGGGa~e~~ls~~L~~~~~-~~~~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~~~~ 539 (571)
+|++|+++++|+|||||++|+++|++|++++. +.++.+| +++++|++||+.||++||+|||+|+.+++++|+.. +.+
T Consensus 399 l~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~-~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~ 476 (529)
T CHL00093 399 INATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDEL-IGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ-DFE 476 (529)
T ss_pred HHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc-CCC
Confidence 99999999999999999999999999999876 5666665 89999999999999999999999999999999764 558
Q ss_pred eeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 540 YGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 540 ~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
+|||+.+|++.||++.|||||+.|| ++|+.|+
T Consensus 477 ~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~ 509 (529)
T CHL00093 477 IGYNAANNKFVNMYEAGIIDPAKVTRSALQNAA 509 (529)
T ss_pred EeEECCCCcccchHhccCEEcHHHHHHHHHHHH
Confidence 9999999999999999999999999 9999984
No 10
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.9e-107 Score=895.14 Aligned_cols=505 Identities=57% Similarity=0.866 Sum_probs=483.4
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHH
Q 008279 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (571)
Q Consensus 62 ~~k~i~~~~~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 141 (571)
|+|.+.|+ +++++.+++|+..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||++++||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~ 79 (541)
T PRK12851 2 AAKEVKFH--VEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVAS 79 (541)
T ss_pred Ccceeccc--HHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHH
Confidence 47899999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCch-HHHHHHHhhcCCchHHH
Q 008279 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVG 220 (571)
Q Consensus 142 ~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls 220 (571)
+||+++||||||+|+|+++||+++.+++++|+||..|++||+.|++.++++|+++++|+++. +|.++|++|+++++.|+
T Consensus 80 ~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~ 159 (541)
T PRK12851 80 KTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIG 159 (541)
T ss_pred hhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999998999999
Q ss_pred HHHHHHHHhhccCCceEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCCCHHHHHHHHHH
Q 008279 221 NMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLED 300 (571)
Q Consensus 221 ~li~~Av~~v~~~g~I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~~~~~l~~~le~ 300 (571)
+++++|+..++++|.|.+..+....+++++++|++|+++|.+|||+++.++|+++++||+||++|+++++.+++.+++++
T Consensus 160 ~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~ 239 (541)
T PRK12851 160 RLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEA 239 (541)
T ss_pred HHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHH
Confidence 99999999999888777765544444559999999999999999999988999999999999999999999999999999
Q ss_pred HHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecccCccccCCCCCCcee
Q 008279 301 AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN 380 (571)
Q Consensus 301 i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~ 380 (571)
+.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+||++++++|+|||++|||++++++.+++++++++++||+
T Consensus 240 i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~ 319 (541)
T PRK12851 240 VVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGR 319 (541)
T ss_pred HHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred eeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHH
Q 008279 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (571)
Q Consensus 381 ~~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DA 460 (571)
|+.|++.+++|++++++++++++..|+++++++++.+.++|++++|++|+++|+|+++||+|||+|+.+++|++|+++||
T Consensus 320 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DA 399 (541)
T PRK12851 320 AKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDA 399 (541)
T ss_pred ccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCce
Q 008279 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKY 540 (571)
Q Consensus 461 l~~~r~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~~~~~ 540 (571)
++++++++++|||||||++|++++.+|++++.. ++.++ +++++|++||+.||++||+|||+|+.+++++|++.+ .++
T Consensus 400 l~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~-~~~~~-~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-~~~ 476 (541)
T PRK12851 400 LHATRAAVEEGIVPGGGVALLRAVKALDKLETA-NGDQR-TGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP-GGY 476 (541)
T ss_pred HHHHHHHHHcCcccCchHHHHHHHHHHHHHhcC-CcHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCe
Confidence 999999999999999999999999999998765 55554 899999999999999999999999999999998765 479
Q ss_pred eEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 541 GYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 541 Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
|||+.+|++.||++.|||||+.|| ++|++|+
T Consensus 477 G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~ 508 (541)
T PRK12851 477 GFNAATNEYGDLYAQGVIDPVKVVRTALQNAA 508 (541)
T ss_pred eeeCCCCCccchhhccCEecHHHHHHHHHHHH
Confidence 999999999999999999999999 9999984
No 11
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=3.1e-106 Score=890.55 Aligned_cols=505 Identities=52% Similarity=0.840 Sum_probs=486.0
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHh
Q 008279 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (571)
Q Consensus 63 ~k~i~~~~~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 142 (571)
+|.+.|| +++|+.+++|+..++++|+|||||+||+|||+++.|+|+|||||+||+|+|++++|++++||+|++++|++
T Consensus 3 ~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~ 80 (546)
T PRK14104 3 AKEVKFG--VDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASK 80 (546)
T ss_pred cceecch--HHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHh
Confidence 6899999 99999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred cccccCCcccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCch-HHHHHHHhhcCCchHHHH
Q 008279 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (571)
Q Consensus 143 q~~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls~ 221 (571)
||+++||||||+||||++||+++.+++++|+||..|++||++|.+.++++|+++++|+++. +|.++|++|+++++.+++
T Consensus 81 qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~ 160 (546)
T PRK14104 81 SADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGK 160 (546)
T ss_pred hcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876 899999999999999999
Q ss_pred HHHHHHHhhccCCceEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCCCHHHHHHHHHHH
Q 008279 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301 (571)
Q Consensus 222 li~~Av~~v~~~g~I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~~~~~l~~~le~i 301 (571)
++++|+.+++++|.|.++.+++++|.+++++|++|++||.+|||+++++.++.++++|+|+++|.+++++++++++|+.+
T Consensus 161 lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i 240 (546)
T PRK14104 161 FLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAV 240 (546)
T ss_pred HHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHH
Confidence 99999999999999999888888666699999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecccCccccCCCCCCceee
Q 008279 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNA 381 (571)
Q Consensus 302 ~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~ 381 (571)
.+.|+||||++++|+++|+++|..|+++|.++|+|||+|+||+.++.+|+|||++|||++++++.++.++++++++||+|
T Consensus 241 ~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a 320 (546)
T PRK14104 241 VQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRA 320 (546)
T ss_pred HHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred eEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHH
Q 008279 382 SKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDAL 461 (571)
Q Consensus 382 ~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl 461 (571)
++++++++++++++++++++.+..|+++++.+++++.++|++++|+||+++|+++++||+|||+|+.+++|++|+++||+
T Consensus 321 ~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal 400 (546)
T PRK14104 321 KKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAM 400 (546)
T ss_pred eEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCcee
Q 008279 462 NATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYG 541 (571)
Q Consensus 462 ~~~r~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~~~~~G 541 (571)
|++++++++|||||||++|++++..|+++.. ..+ ++++++++|++||+.||++||+|||+|+.+++.+|++.+++++|
T Consensus 401 ~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~-~~~-~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G 478 (546)
T PRK14104 401 HATRAAVEEGIVPGGGVALLRASEQLKGIKT-KND-DQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYG 478 (546)
T ss_pred HHHHHHHHcCcCcCchHHHHHHHHHHHHhhc-CCh-HHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEe
Confidence 9999999999999999999999999998743 344 45599999999999999999999999999999999876667899
Q ss_pred EEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 542 YNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 542 id~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
||+.+|++.||++.|||||+.|| ++|++|+
T Consensus 479 ~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~ 509 (546)
T PRK14104 479 FDSQTGEYGNLVSKGIIDPTKVVRTAIQNAA 509 (546)
T ss_pred EeCCCCceeehHhcCCEEcHHHHHHHHHHHH
Confidence 99999999999999999999999 9999984
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-99 Score=788.32 Aligned_cols=503 Identities=56% Similarity=0.846 Sum_probs=491.6
Q ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHh
Q 008279 63 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAK 142 (571)
Q Consensus 63 ~k~i~~~~~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~ 142 (571)
+|+|+|| .++|..+++|++.|+++|.+||||+||+++|.+.+|.|+|||||.|+++++++.|+.+|+||+|+++++.+
T Consensus 16 ak~i~fg--~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~ 93 (550)
T KOG0356|consen 16 AKDIKFG--KDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANN 93 (550)
T ss_pred ccccccC--HHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhh
Confidence 8999999 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCch-HHHHHHHhhcCCchHHHH
Q 008279 143 TNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGN 221 (571)
Q Consensus 143 q~~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~L~~va~ts~~~~~~ls~ 221 (571)
+++.+||||||+++|+++|..++.+-+.+|.+|.+|.+|+.++++.+++.|+++++||+.. ++.+||++|+++|.++++
T Consensus 94 tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~~ig~ 173 (550)
T KOG0356|consen 94 TNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKEIGN 173 (550)
T ss_pred ccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988 999999999999999999
Q ss_pred HHHHHHHhhccCCceEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCCCHHHHHHHHHHH
Q 008279 222 MIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDA 301 (571)
Q Consensus 222 li~~Av~~v~~~g~I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~~~~~l~~~le~i 301 (571)
++.+|+.+++++|+|+++.|.++.|++++++||.|++||++|||+++++.+++++++|++|+.+.+|++++++.|.||..
T Consensus 174 li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~LE~A 253 (550)
T KOG0356|consen 174 LISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALELA 253 (550)
T ss_pred HHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecccC-ccccCCCCCCcee
Q 008279 302 IRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVG-LALDKVGKEVLGN 380 (571)
Q Consensus 302 ~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~-~~~~~~~~~~lG~ 380 (571)
.+..+||||++++|+.++|.+|+.|++++.++++|||+|+||+.|+..+.|++.+||++++.++.+ ++++...+++||.
T Consensus 254 ~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~ 333 (550)
T KOG0356|consen 254 LAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGE 333 (550)
T ss_pred hhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999988 7899999999999
Q ss_pred eeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHH
Q 008279 381 ASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 460 (571)
Q Consensus 381 ~~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DA 460 (571)
|+.+.+++++++++.+.+++.+++.||+|++.+++.+.++|++++++||+++|++++++|.|||.|+.|++|++.+++||
T Consensus 334 ~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~da 413 (550)
T KOG0356|consen 334 VGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDA 413 (550)
T ss_pred ceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCCCce
Q 008279 461 LNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKY 540 (571)
Q Consensus 461 l~~~r~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~~~~~ 540 (571)
+|++++|+++|+|||||+++++|++.|.++.. .++.+++.|++++.+||..|..+|++|||.|+..++.|++ . ..+
T Consensus 414 lnat~aaveeGivpGGG~all~~~~~l~~lk~-~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~-~--~~~ 489 (550)
T KOG0356|consen 414 LNATRAAVEEGIVPGGGTALLRAIPVLDELKA-TNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVL-N--DDY 489 (550)
T ss_pred HHHHHHHhhcCcccCCchHHHHhhhhhhhccc-ccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHH-h--hhh
Confidence 99999999999999999999999999999875 5677788999999999999999999999999999999998 3 389
Q ss_pred eEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 541 GYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 541 Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
|||..+++|+||++.||+||++|. +||..|.
T Consensus 490 gyda~~~ey~dlv~~GiidP~kVvr~al~~a~ 521 (550)
T KOG0356|consen 490 GYDAAKGEYVDLVEAGIIDPTKVVRTALTDAA 521 (550)
T ss_pred hhhhhcccHHHHHhccCCChHHHHHHhhhhhh
Confidence 999999999999999999999999 9998874
No 13
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=5.6e-88 Score=745.78 Aligned_cols=440 Identities=26% Similarity=0.411 Sum_probs=401.6
Q ss_pred cccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhccc
Q 008279 66 LHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTND 145 (571)
Q Consensus 66 i~~~~~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~ 145 (571)
-..| .++|+.++.||..++++++|||||+||+|||++++|+++|||||+||+|+|+++||+ ++|++++|++||+
T Consensus 11 ~~~~--~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~qd~ 84 (519)
T TIGR02339 11 RTKG--RDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQDA 84 (519)
T ss_pred cccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHHHHH
Confidence 3445 779999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred ccCCcccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCc--h-HHHHHHHhhcCCc------
Q 008279 146 LAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED--S-ELADVAAVSAGNN------ 216 (571)
Q Consensus 146 ~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~--~-~L~~va~ts~~~~------ 216 (571)
++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++. . .|.++|+|+++++
T Consensus 85 ~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~ 164 (519)
T TIGR02339 85 EVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVT 164 (519)
T ss_pred HhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchh
Confidence 999999999999999999999999999999999999999999999999999999864 3 7999999998754
Q ss_pred -hHHHHHHHHHHHhhcc---CCc-------eEE--ecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEee
Q 008279 217 -YEVGNMIAEAMSKVGR---KGV-------VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLL 283 (571)
Q Consensus 217 -~~ls~li~~Av~~v~~---~g~-------I~i--~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll 283 (571)
+.|++|+++|+.++++ +|. |++ .+|++++|+ ++++|++|+++|.+| +|+.+++||+|++
T Consensus 165 ~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~vi~~~~~~~-------~m~~~i~n~kIll 236 (519)
T TIGR02339 165 KDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDT-ELVEGIVVDKEPVHP-------GMPKRVKNAKIAL 236 (519)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcc-eeEeeEEEecCCCCC-------CCccccCCCcEEE
Confidence 8899999999999985 453 333 799999998 899999999999987 3777899999999
Q ss_pred eccc-------------CCCHHHHHHHHH-----------HHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeecc
Q 008279 284 VDKK-------------ITNARDLINVLE-----------DAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKA 339 (571)
Q Consensus 284 ~d~~-------------i~~~~~l~~~le-----------~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~ 339 (571)
++++ +++++++.++++ .+++.|+||||++++|+++++++|..+ ++++|+
T Consensus 237 l~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~------gI~~v~- 309 (519)
T TIGR02339 237 LDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKA------GILAVR- 309 (519)
T ss_pred EeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHC------CCEEEe-
Confidence 9998 677777776655 899999999999999999999999755 456665
Q ss_pred CCccCcchhhHHHHHHHhCCeEeecccCccccCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHHh
Q 008279 340 PGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIEN 416 (571)
Q Consensus 340 ~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~i~~~~~~~~i~~ri~~l~~~~~~ 416 (571)
++++++|+|||++|||++++ ++++++++.||+|+.|++. +++|++|++|+++
T Consensus 310 ----~v~~~~L~rIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~---------------- 364 (519)
T TIGR02339 310 ----RVKKSDIEKLARATGAKIVS-----SIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNP---------------- 364 (519)
T ss_pred ----cCCHHHHHHHHHHhCCEEeC-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC----------------
Confidence 66789999999999999998 5888888999999999865 4889999988653
Q ss_pred hhcHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCC
Q 008279 417 AEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLD 495 (571)
Q Consensus 417 ~~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~ 495 (571)
..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++++++..
T Consensus 365 -------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~ 425 (519)
T TIGR02339 365 -------------------KAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIG 425 (519)
T ss_pred -------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCC
Confidence 378999999999999999999999999999999999 999999999999999999887777
Q ss_pred chhhHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCceeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 496 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 496 ~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~---~~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
+.++ +++++|++||+.||++|++|||+|+.+++.+|+.. ++.++|||+.+|++.||++.|||||+.|| ++|+.|+
T Consensus 426 ~~~~-~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~ 504 (519)
T TIGR02339 426 GREQ-LAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSAT 504 (519)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCccchhhccceEcHHHHHHHHHHHH
Confidence 7665 89999999999999999999999999999999753 34679999999999999999999999999 9999884
No 14
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.4e-87 Score=742.85 Aligned_cols=441 Identities=25% Similarity=0.392 Sum_probs=403.2
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcc
Q 008279 65 DLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144 (571)
Q Consensus 65 ~i~~~~~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~ 144 (571)
+..+| +++++.++.||..++++|++||||+||+|||+++.|+++|||||+||+++|+++||. |+|++++|++||
T Consensus 9 ~~~~~--~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~ 82 (517)
T cd03343 9 QRTSG--RDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQD 82 (517)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHH----HHHHHHHHHHHH
Confidence 34556 789999999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred cccCCcccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccC--ch-HHHHHHHhhcCCc-----
Q 008279 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGNN----- 216 (571)
Q Consensus 145 ~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~-~L~~va~ts~~~~----- 216 (571)
+++||||||+|+|+++||+++.+++++|+||..|++||++|.+.++++|++++++++ +. .|.+||++|++++
T Consensus 83 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~ 162 (517)
T cd03343 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAA 162 (517)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhH
Confidence 999999999999999999999999999999999999999999999999999999986 44 8999999998865
Q ss_pred -hHHHHHHHHHHHhhccCCc---------eEE--ecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeee
Q 008279 217 -YEVGNMIAEAMSKVGRKGV---------VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLV 284 (571)
Q Consensus 217 -~~ls~li~~Av~~v~~~g~---------I~i--~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~ 284 (571)
+.|++++++|+.++++++. |++ .+|++++|+ ++++|++|+++|.+|+| ++.++||+|+++
T Consensus 163 ~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~v~~~~~~~~~m-------~~~~~n~~Illl 234 (517)
T cd03343 163 KDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDT-ELIRGIVIDKEVVHPGM-------PKRVENAKIALL 234 (517)
T ss_pred HHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHc-ceeeeEEEeccCCCCCC-------ccccCCCcEEEE
Confidence 8999999999999977532 555 799999998 89999999999999874 567899999999
Q ss_pred ccc-------------CCCHHHHHHH-----------HHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccC
Q 008279 285 DKK-------------ITNARDLINV-----------LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAP 340 (571)
Q Consensus 285 d~~-------------i~~~~~l~~~-----------le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~ 340 (571)
+++ +++++++.++ ++.+++.|+||||++++|+++++++|..+ ++++|+
T Consensus 235 ~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~------gI~~v~-- 306 (517)
T cd03343 235 DAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKA------GILAVR-- 306 (517)
T ss_pred eccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CcEEEE--
Confidence 998 4777776654 55899999999999999999999999764 456776
Q ss_pred CccCcchhhHHHHHHHhCCeEeecccCccccCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHHhh
Q 008279 341 GFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENA 417 (571)
Q Consensus 341 ~~~~~~~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~ 417 (571)
++++++|+|||++|||++++ ++++++++.||+|+.|++. +++|+++++|+++
T Consensus 307 ---~v~~~~l~~Ia~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~----------------- 361 (517)
T cd03343 307 ---RVKKSDMEKLARATGAKIVT-----NIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP----------------- 361 (517)
T ss_pred ---eCCHHHHHHHHHHhCCEEec-----chhhCChhhCCccceEEEEEECCeEEEEEEcCCCC-----------------
Confidence 66789999999999999998 5888889999999999865 7889999988653
Q ss_pred hcHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCc
Q 008279 418 EQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDN 496 (571)
Q Consensus 418 ~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~ 496 (571)
..+||+|||+|+.+++|.+|+++||++++|+++++| +|||||++|++++.+|++++.+.++
T Consensus 362 ------------------~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~ 423 (517)
T cd03343 362 ------------------KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGG 423 (517)
T ss_pred ------------------ceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCC
Confidence 378999999999999999999999999999999999 9999999999999999998777777
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCceeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 497 DEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 497 ~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~---~~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
.++ +++++|++||+.||++|++|||+|+.+++.+|++. ++.++|||+.+|++.||++.|||||+.|| ++|+.|+
T Consensus 424 ~~~-~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~ 501 (517)
T cd03343 424 REQ-LAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSAT 501 (517)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccchhhcCceecHHHHHHHHHHHH
Confidence 665 89999999999999999999999999999999753 34679999999999999999999999999 9999884
No 15
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.6e-88 Score=739.40 Aligned_cols=430 Identities=24% Similarity=0.362 Sum_probs=393.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcc
Q 008279 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (571)
Q Consensus 72 ~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGT 151 (571)
.+++..++.+|..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|+.++|++||+++||||
T Consensus 11 ~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----a~l~~~~a~~qd~~~GDGT 86 (484)
T cd03342 11 GQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPT----ASMIARAATAQDDITGDGT 86 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHHhhhHhCCCh
Confidence 779999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccC---ch-HHHHHHHhhcCCc------hHHHH
Q 008279 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE---DS-ELADVAAVSAGNN------YEVGN 221 (571)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~---~~-~L~~va~ts~~~~------~~ls~ 221 (571)
||+++|+++||+++.+++++|+||..|++||++|.+.++++|++++++++ +. .|.+||++|++++ +.|++
T Consensus 87 Tt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~ 166 (484)
T cd03342 87 TSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTE 166 (484)
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 55 8999999998865 89999
Q ss_pred HHHHHHHhhccCC-c-------eEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCCCHHH
Q 008279 222 MIAEAMSKVGRKG-V-------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARD 293 (571)
Q Consensus 222 li~~Av~~v~~~g-~-------I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~~~~~ 293 (571)
++++|+..+++++ . |...+|++..|+ ++++|++|+++|.+|+| +++++||+|+++|+++..++.
T Consensus 167 l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds-~~i~G~~~~~~~~~~~m-------~~~~~n~~Ill~~~~le~~~~ 238 (484)
T cd03342 167 IVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDT-KLIRGLVLDHGARHPDM-------PKRVENAYILTCNVSLEYEKT 238 (484)
T ss_pred HHHHHHHHHhhcCCccChhHeEEEEecCCChhhc-eEEeeEEEecCCCCCCC-------CccccCceEEEEeCCCCCCcc
Confidence 9999999998765 1 333589999998 99999999999999874 667899999999999987653
Q ss_pred -HHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecccCccccC
Q 008279 294 -LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDK 372 (571)
Q Consensus 294 -l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~~~~ 372 (571)
+... .-.+||||+++|+++++++|..| +|+||++ +++++|+|||++|||++++ ++++
T Consensus 239 ~~~~~------~~~~lvi~~~~I~~~al~~l~~~------~I~av~~-----~~~~~l~~ia~~tGa~ii~-----~l~~ 296 (484)
T cd03342 239 EVNSG------FFYSVVINQKGIDPPSLDMLAKE------GILALRR-----AKRRNMERLTLACGGVAMN-----SVDD 296 (484)
T ss_pred ccCcE------EEEEEEEeCCCccHHHHHHHHHC------CCeEEEe-----CCHHHHHHHHHHhCCEEec-----cccc
Confidence 2211 12469999999999999999988 4788874 5688999999999999999 5889
Q ss_pred CCCCCceeeeEE---EEecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCeEEEEEccCCHHH
Q 008279 373 VGKEVLGNASKV---VLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETE 449 (571)
Q Consensus 373 ~~~~~lG~~~~v---~i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~ 449 (571)
+++++||+|+.| ++++++|+++++++++ +.+||+|||+|+.+
T Consensus 297 ~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-----------------------------------~~~tI~lrg~t~~~ 341 (484)
T cd03342 297 LSPECLGYAGLVYERTLGEEKYTFIEGVKNP-----------------------------------KSCTILIKGPNDHT 341 (484)
T ss_pred CChhhCcccceEEEEEECCeEEEEEECCCCC-----------------------------------cEEEEEEeCCCHHH
Confidence 999999999999 4678899999988653 48999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHhHHHHHHHHHcCCChHHH
Q 008279 450 LKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVV 528 (571)
Q Consensus 450 l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~v 528 (571)
++|.||+++||++++++++++| +||||||+|++++.+|++++.+.++.+| +++++|++||+.||++||+|||+|+.++
T Consensus 342 l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~~ 420 (484)
T cd03342 342 ITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAK-LGVQAFADALLVIPKTLAENSGLDVQET 420 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999999999999999 9999999999999999999877777665 8999999999999999999999999999
Q ss_pred HHHHHhc---CCCceeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 529 SEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 529 i~kl~~~---~~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
+.+|++. ++.++|||+.+|++.||++.|||||+.|| ++|+.|+
T Consensus 421 l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~ 467 (484)
T cd03342 421 LVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSAT 467 (484)
T ss_pred HHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHH
Confidence 9999754 35679999999999999999999999999 9999884
No 16
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.8e-87 Score=742.61 Aligned_cols=441 Identities=25% Similarity=0.350 Sum_probs=396.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcc
Q 008279 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (571)
Q Consensus 72 ~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGT 151 (571)
+++|+.+++||..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 7 ~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 7 QDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDKEVGDGT 82 (527)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChH----HHHHHHHHHHHHHHhCCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh-cccccC--ch-HHHHHHHhhcC------CchHHHH
Q 008279 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQ-MSKEVE--DS-ELADVAAVSAG------NNYEVGN 221 (571)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~-~s~~v~--~~-~L~~va~ts~~------~~~~ls~ 221 (571)
||+|||+++||+++.+++++|+||..|++||+.|.+.++++|++ +++|++ +. .|.++|+|+++ +.+.|++
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 162 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFAN 162 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999996 899987 45 79999999876 2489999
Q ss_pred HHHHHHHhhcc---CCc---------eEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCC
Q 008279 222 MIAEAMSKVGR---KGV---------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT 289 (571)
Q Consensus 222 li~~Av~~v~~---~g~---------I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~ 289 (571)
++++|+..++. +|. |...+|++++|+ ++++|++|+++|.+| +|++.++||+|+++++++.
T Consensus 163 l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s-~li~Givi~~~~~~~-------~m~~~i~n~kIlll~~~Le 234 (527)
T cd03335 163 MVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKES-YLVNGYALNCTRASQ-------GMPTRVKNAKIACLDFNLQ 234 (527)
T ss_pred HHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhc-ceeeeEEEecccCCC-------CCcccccCCcEEEEeccCC
Confidence 99999999952 232 234689999998 999999999999887 4777899999999999864
Q ss_pred C-------------HHH-----------HHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCc
Q 008279 290 N-------------ARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (571)
Q Consensus 290 ~-------------~~~-----------l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~ 345 (571)
. +.+ +.++++.+++.|+||||++++|+++++++|..+ ++++++ ++
T Consensus 235 ~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~------~I~~v~-----~v 303 (527)
T cd03335 235 KTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEA------GAMAVR-----RV 303 (527)
T ss_pred CCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHC------CcEEEE-----eC
Confidence 3 222 335678889999999999999999999999986 567665 66
Q ss_pred chhhHHHHHHHhCCeEeecccCcc-ccCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHH
Q 008279 346 KSQYLDDIAILTGGTVIRDEVGLA-LDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (571)
Q Consensus 346 ~~~~L~~ia~~tGa~ii~~~~~~~-~~~~~~~~lG~~~~v~---i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~ 421 (571)
++++|+|||++|||+++++..+++ .+++++++||+|+.|+ +++++|++|+++++
T Consensus 304 ~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~---------------------- 361 (527)
T cd03335 304 KKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKK---------------------- 361 (527)
T ss_pred CHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCC----------------------
Confidence 789999999999999999644331 2345667899999998 67889999998765
Q ss_pred HHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhH
Q 008279 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (571)
Q Consensus 422 e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~ 500 (571)
+++|||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++++++..+.++
T Consensus 362 -------------~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~- 427 (527)
T cd03335 362 -------------RSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQ- 427 (527)
T ss_pred -------------CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHH-
Confidence 3589999999999999999999999999999999999 9999999999999999999877777665
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcC-----------CCceeEEcCCCcccchhhcCcccchhHH-HHHH
Q 008279 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD-----------NHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIA 568 (571)
Q Consensus 501 ~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~-----------~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~ 568 (571)
+++++|++||+.||++||+|||+|+.+++.+|++.| ++++|||+.+|++.||++.|||||+.|| ++|+
T Consensus 428 ~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~ 507 (527)
T cd03335 428 LAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLK 507 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceecHHHHHHHHH
Confidence 899999999999999999999999999999997632 3478999999999999999999999999 9999
Q ss_pred hcC
Q 008279 569 IAL 571 (571)
Q Consensus 569 ~A~ 571 (571)
.|+
T Consensus 508 ~A~ 510 (527)
T cd03335 508 FAT 510 (527)
T ss_pred HHH
Confidence 884
No 17
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.2e-87 Score=737.94 Aligned_cols=436 Identities=24% Similarity=0.363 Sum_probs=393.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcc
Q 008279 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (571)
Q Consensus 72 ~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGT 151 (571)
.+++..++.+|..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~----a~ll~~~a~~qd~~~GDGT 90 (531)
T TIGR02347 15 DAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPT----ASMIARAATAQDDITGDGT 90 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHHhhhhhcCcH
Confidence 779999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhccccc---Cch-HHHHHHHhhcCC------chHHHH
Q 008279 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV---EDS-ELADVAAVSAGN------NYEVGN 221 (571)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v---~~~-~L~~va~ts~~~------~~~ls~ 221 (571)
||+|||+++||+++.+++++|+||..|++||+.|.+.++++|+++++++ .+. .|.++|+|++++ +++|++
T Consensus 91 TtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 170 (531)
T TIGR02347 91 TSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTE 170 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999765 344 899999998764 789999
Q ss_pred HHHHHHHhhccCCc------eEE--ecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCCCH--
Q 008279 222 MIAEAMSKVGRKGV------VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNA-- 291 (571)
Q Consensus 222 li~~Av~~v~~~g~------I~i--~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~~~-- 291 (571)
++++|+..+++++. |.+ ..|++..|+ ++++|++|+++|.+|+ |+++++||+|+++|++++..
T Consensus 171 iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds-~~v~Giv~~~~~~~~~-------~~~~~~n~~Ill~~~~le~~~~ 242 (531)
T TIGR02347 171 IVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDT-TLIRGLVLDHGARHPD-------MPRRVKNAYILTCNVSLEYEKT 242 (531)
T ss_pred HHHHHHHHHhhcCCCCChhHeEEEEecCCCcccc-EEEeeEEEecCcCCCC-------CceeccCceEEEEeCCCCCCcc
Confidence 99999999987643 332 578899998 9999999999999987 45688999999999986432
Q ss_pred -----------HH-----------HHHHHHHHHHcCC-------C---eEEEcccccHHHHHHHHHhhhcccceeeeecc
Q 008279 292 -----------RD-----------LINVLEDAIRGAY-------P---ILIIAEDIEQEALATLVVNKLRGALKIAALKA 339 (571)
Q Consensus 292 -----------~~-----------l~~~le~i~~~g~-------~---lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~ 339 (571)
++ +..+++++++.|. + ||+++++|++.++++|.++ +|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~------~I~~i~- 315 (531)
T TIGR02347 243 EVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKE------GIMALR- 315 (531)
T ss_pred ccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHC------CceEEc-
Confidence 22 3445677777551 4 8999999999999999886 567776
Q ss_pred CCccCcchhhHHHHHHHhCCeEeecccCccccCCCCCCceeeeEE---EEecceEEEEcCCCChhhHHHHHHHHHHHHHh
Q 008279 340 PGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKV---VLTKDTTTIVGDGSTQDAVSKRVAQIRTLIEN 416 (571)
Q Consensus 340 ~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v---~i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~ 416 (571)
++++.+|+|||++|||+++. ++++++++.||+|+.| ++++++|++|++++++
T Consensus 316 ----rv~~~~le~ia~~tGa~~i~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~---------------- 370 (531)
T TIGR02347 316 ----RAKRRNMERLTLACGGEALN-----SVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP---------------- 370 (531)
T ss_pred ----cCCHHHHHHHHHHhCCEEec-----ccccCCccccccceEEEEEEECCeEEEEEEcCCCC----------------
Confidence 55688999999999999998 5889999999999999 5678899999988653
Q ss_pred hhcHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCC
Q 008279 417 AEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLD 495 (571)
Q Consensus 417 ~~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~ 495 (571)
++|||+|||+|+.+++|++|+++||++++++++++| +||||||+|++++.+|++++.+.+
T Consensus 371 -------------------~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~ 431 (531)
T TIGR02347 371 -------------------KSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVK 431 (531)
T ss_pred -------------------CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCC
Confidence 489999999999999999999999999999999999 999999999999999999987777
Q ss_pred chhhHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcCC---CceeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 496 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDN---HKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 496 ~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~~---~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
+.++ +++++|++||+.||++||+|||+|+.+++.+|++.|+ .++|||+.+|++.||++.|||||+.|| ++|++|+
T Consensus 432 ~~~~-~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~ 510 (531)
T TIGR02347 432 GKAK-LGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSAT 510 (531)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHHHHHHHHHHHH
Confidence 7666 8999999999999999999999999999999976543 579999999999999999999999999 9999984
No 18
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.9e-87 Score=737.81 Aligned_cols=441 Identities=23% Similarity=0.337 Sum_probs=397.8
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcc
Q 008279 65 DLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144 (571)
Q Consensus 65 ~i~~~~~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~ 144 (571)
+..|| +++++.++.||..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||
T Consensus 17 ~~~~~--~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~ 90 (526)
T cd03339 17 KRLKG--LEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQI----AKLLVELSKSQD 90 (526)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHH----HHHHHHHHHhhh
Confidence 47788 899999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccCCcccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccC----ch-HHHHHHHhhcCC----
Q 008279 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE----DS-ELADVAAVSAGN---- 215 (571)
Q Consensus 145 ~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~----~~-~L~~va~ts~~~---- 215 (571)
+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ +. .|.++|+|++++
T Consensus 91 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~ 170 (526)
T cd03339 91 DEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVS 170 (526)
T ss_pred hhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchh
Confidence 999999999999999999999999999999999999999999999999999999886 23 799999998764
Q ss_pred --chHHHHHHHHHHHhhccC-------Cc--eEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeee
Q 008279 216 --NYEVGNMIAEAMSKVGRK-------GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLV 284 (571)
Q Consensus 216 --~~~ls~li~~Av~~v~~~-------g~--I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~ 284 (571)
.+.|++++++|+..+... .. |...+|++++|| ++++|++|+++|.+|+| +..++||||+++
T Consensus 171 ~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS-~~v~Givi~~~~~~~~m-------~~~~~n~kI~ll 242 (526)
T cd03339 171 RCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDT-KLVKGIVIDKDFSHPQM-------PKEVKDAKIAIL 242 (526)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHc-ceeeeEEEecccCCCCC-------CceecCCCEEEE
Confidence 378999999999988531 12 334699999999 89999999999999875 445678888888
Q ss_pred ccc-------------CCCHHH-----------HHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccC
Q 008279 285 DKK-------------ITNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAP 340 (571)
Q Consensus 285 d~~-------------i~~~~~-----------l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~ 340 (571)
+++ ++++++ +.++++++++.|+||||++++|+++++++|..|+ +.||+++
T Consensus 243 ~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~~v 316 (526)
T cd03339 243 TCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNG------LPAVRWV 316 (526)
T ss_pred EecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCC------CEEEEeC
Confidence 764 455555 6677899999999999999999999999999874 5677753
Q ss_pred CccCcchhhHHHHHHHhCCeEeecccCccccCCCCCCceeeeEEEE---e--cceEEEEcCCCChhhHHHHHHHHHHHHH
Q 008279 341 GFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---T--KDTTTIVGDGSTQDAVSKRVAQIRTLIE 415 (571)
Q Consensus 341 ~~~~~~~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~i---~--~~~~~~i~~~~~~~~i~~ri~~l~~~~~ 415 (571)
++++|+|||++|||++++ ++++++++.||+|+.|+. + ++.++++++|+++
T Consensus 317 -----~~~~LerIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~--------------- 371 (526)
T cd03339 317 -----GGVEIELIAIATGGRIVP-----RFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNS--------------- 371 (526)
T ss_pred -----CHHHHHHHHHHhCCEEec-----chhhCChhhcccCceEEEEEecCCCcEEEEEECCCCC---------------
Confidence 568899999999999998 588899999999999973 2 4688999988653
Q ss_pred hhhcHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcC
Q 008279 416 NAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 494 (571)
Q Consensus 416 ~~~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~ 494 (571)
+.+||+|||+|+.+++|.||+++||++++++++++| +|||||++|++++.+|++++.+.
T Consensus 372 --------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~ 431 (526)
T cd03339 372 --------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKC 431 (526)
T ss_pred --------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccC
Confidence 489999999999999999999999999999999999 99999999999999999988777
Q ss_pred CchhhHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcC----CCceeEEcCCCcccchhhcCcccchhHH-HHHHh
Q 008279 495 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD----NHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAI 569 (571)
Q Consensus 495 ~~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~----~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~ 569 (571)
.+.++ +++++|++||++||++|++|||+|+.+++.+|+..| +.++|||+.+|++.||++.|||||+.|| ++|+.
T Consensus 432 ~~~~~-~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~ 510 (526)
T cd03339 432 SGIEQ-YAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILL 510 (526)
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHHHHH
Confidence 77665 899999999999999999999999999999997433 4579999999999999999999999999 99998
Q ss_pred cC
Q 008279 570 AL 571 (571)
Q Consensus 570 A~ 571 (571)
|+
T Consensus 511 A~ 512 (526)
T cd03339 511 AT 512 (526)
T ss_pred HH
Confidence 84
No 19
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8e-87 Score=738.45 Aligned_cols=441 Identities=24% Similarity=0.341 Sum_probs=396.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcc
Q 008279 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (571)
Q Consensus 72 ~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGT 151 (571)
+++|+.+++||..|+++|+|||||+||+|||++++|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 11 ~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~qd~~~GDGT 86 (536)
T TIGR02340 11 QDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDREVGDGT 86 (536)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChH----HHHHHHHHHHHHHHhCCCh
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhc-ccccC--ch-HHHHHHHhhcC------CchHHHH
Q 008279 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQM-SKEVE--DS-ELADVAAVSAG------NNYEVGN 221 (571)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~-s~~v~--~~-~L~~va~ts~~------~~~~ls~ 221 (571)
||+|||+++||+++.+++++|+||+.|++||+.|.+.++++|+++ ++|++ +. +|.++|+++++ +++.|++
T Consensus 87 Tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~ 166 (536)
T TIGR02340 87 TSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSN 166 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHH
Confidence 999999999999999999999999999999999999999999975 88887 44 89999999987 5789999
Q ss_pred HHHHHHHhhc---cCCc-------e--EEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCC
Q 008279 222 MIAEAMSKVG---RKGV-------V--TLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT 289 (571)
Q Consensus 222 li~~Av~~v~---~~g~-------I--~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~ 289 (571)
++++|+..++ .+|. | ...+|+++.|+ ++++|++|+++|.+| +|+++++||+|++++++++
T Consensus 167 l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s-~~i~Gi~i~~~~~~~-------~m~~~~~n~kIli~~~~L~ 238 (536)
T TIGR02340 167 IVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARES-YLVKGYALNCTRASQ-------QMPKRIKKAKIACLDFNLQ 238 (536)
T ss_pred HHHHHHHHHhcccccCccccchHHeEEEEecCCCcccc-EEEEEEEEecccCCC-------CCcceecCCcEEEEecCCC
Confidence 9999999996 2332 2 23699999887 999999999999886 4788899999999999864
Q ss_pred CH-------------H-----------HHHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCc
Q 008279 290 NA-------------R-----------DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (571)
Q Consensus 290 ~~-------------~-----------~l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~ 345 (571)
.. . .+.+.++.+++.|++|||++++|++.++++|..+ ++++++ ++
T Consensus 239 ~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~------~I~~i~-----rv 307 (536)
T TIGR02340 239 KQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEA------GAMGVR-----RC 307 (536)
T ss_pred CCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHC------CcEEEe-----cC
Confidence 33 2 1235678888999999999999999999999887 456665 66
Q ss_pred chhhHHHHHHHhCCeEeecccCc-cccCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHH
Q 008279 346 KSQYLDDIAILTGGTVIRDEVGL-ALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (571)
Q Consensus 346 ~~~~L~~ia~~tGa~ii~~~~~~-~~~~~~~~~lG~~~~v~---i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~ 421 (571)
++++|+|||++|||+++++..++ ..+++++++||+|+.|+ +++++|++|++++++
T Consensus 308 ~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~--------------------- 366 (536)
T TIGR02340 308 KKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGR--------------------- 366 (536)
T ss_pred CHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCC---------------------
Confidence 78999999999999999975444 23456677899999998 678899999987653
Q ss_pred HHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhH
Q 008279 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (571)
Q Consensus 422 e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~ 500 (571)
.+|||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++.+..+.++
T Consensus 367 --------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~- 431 (536)
T TIGR02340 367 --------------KSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQ- 431 (536)
T ss_pred --------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhH-
Confidence 489999999999999999999999999999999999 9999999999999999998776666665
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcC-----------CCceeEEcCCCcccchhhcCcccchhHH-HHHH
Q 008279 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD-----------NHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIA 568 (571)
Q Consensus 501 ~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~-----------~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~ 568 (571)
+++++|++||+.||++||+|||+|+.+++.+|++.| +.++|||+.+|++.||++.|||||+.|| ++|+
T Consensus 432 ~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~ 511 (536)
T TIGR02340 432 LAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLK 511 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhccceecHHHHHHHHH
Confidence 899999999999999999999999999999997632 3469999999999999999999999999 9999
Q ss_pred hcC
Q 008279 569 IAL 571 (571)
Q Consensus 569 ~A~ 571 (571)
.|+
T Consensus 512 ~A~ 514 (536)
T TIGR02340 512 FAT 514 (536)
T ss_pred HHH
Confidence 884
No 20
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.6e-86 Score=733.94 Aligned_cols=443 Identities=22% Similarity=0.323 Sum_probs=397.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcc
Q 008279 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (571)
Q Consensus 72 ~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGT 151 (571)
.++++.++.+|..++++|+|||||+||+|||++++|+++|||||+||+++|+++||+ ++|++++|++||+++||||
T Consensus 7 ~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~----a~ll~~~a~~q~~~~GDGT 82 (515)
T cd03338 7 ADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPA----AKMLVELSKAQDIEAGDGT 82 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHH----HHHHHHHHHHHHhHhcCCc
Confidence 568899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccC--ch-HHHHHHHhhcC------CchHHHHH
Q 008279 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAG------NNYEVGNM 222 (571)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~-~L~~va~ts~~------~~~~ls~l 222 (571)
||+|+|+++||+++.+++++|+||..|++||++|.+.++++|+++++|++ +. +|.++|+||++ +++.|+++
T Consensus 83 tt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~l 162 (515)
T cd03338 83 TSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPI 162 (515)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 44 89999999988 46889999
Q ss_pred HHHHHHhhccCCc----------eEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccC----
Q 008279 223 IAEAMSKVGRKGV----------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI---- 288 (571)
Q Consensus 223 i~~Av~~v~~~g~----------I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i---- 288 (571)
+++|+.++++++. |.+.+|++++|+ ++++|++|+++|.+|++ ||+.++||+++++++++
T Consensus 163 i~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds-~lv~Giv~~k~~~~~~~------~p~~i~n~ki~ll~~~le~~~ 235 (515)
T cd03338 163 AVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDT-ELVDGLVFTQKASKKAG------GPTRIEKAKIGLIQFCLSPPK 235 (515)
T ss_pred HHHHHHHhhcccccCcCCHHHeEEEEecCCChhhc-eeeeeEEEeccccCcCC------CCccccCCcEEEEeccccccc
Confidence 9999999987653 555789999999 99999999999998752 35567888998887754
Q ss_pred ---------CCH-----------HHHHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchh
Q 008279 289 ---------TNA-----------RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348 (571)
Q Consensus 289 ---------~~~-----------~~l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~ 348 (571)
+++ +++.++++.+++.|+||||++++|++++++.++.|.+++ .+|+||+ +++++
T Consensus 236 ~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~-~~I~av~-----~~~~~ 309 (515)
T cd03338 236 TDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVVK-----DIERE 309 (515)
T ss_pred cccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHH-CCceEEe-----cCCHH
Confidence 233 345677899999999999999999655555555555543 5789887 67789
Q ss_pred hHHHHHHHhCCeEeecccCccccCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHH
Q 008279 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREK 425 (571)
Q Consensus 349 ~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~ 425 (571)
+|+|||++|||++++ ++++++++.||+|+.|++. ++.++++.++.+
T Consensus 310 ~LerIa~~tGa~ii~-----sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~-------------------------- 358 (515)
T cd03338 310 EIEFICKTIGCKPVA-----SIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKN-------------------------- 358 (515)
T ss_pred HHHHHHHHHCCEEec-----ccccCCHhhCCCCceEEEEEECCeEEEEEEecCC--------------------------
Confidence 999999999999999 5888888999999999864 557888887653
Q ss_pred HHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHHH
Q 008279 426 LNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGAD 504 (571)
Q Consensus 426 l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~ 504 (571)
+++.|||+|||+|+.+++|+||+++||++++++++++| +|||||++|++++.+|++++.+..+.+| ++++
T Consensus 359 --------~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~-~~~~ 429 (515)
T cd03338 359 --------PGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQ-YCVR 429 (515)
T ss_pred --------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHH-HHHH
Confidence 13689999999999999999999999999999999999 9999999999999999998777667655 8999
Q ss_pred HHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCceeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 505 IVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 505 ~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~---~~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
+|++||+.||++|++|||+|+.+++.+|++. ++.++|||+.+|++.||++.|||||+.|| ++|+.|+
T Consensus 430 ~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~ 500 (515)
T cd03338 430 AFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLAT 500 (515)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceecHHHHHHHHHHHH
Confidence 9999999999999999999999999999764 35689999999999999999999999999 9999884
No 21
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-88 Score=738.27 Aligned_cols=479 Identities=46% Similarity=0.673 Sum_probs=421.8
Q ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHH
Q 008279 62 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 141 (571)
Q Consensus 62 ~~k~i~~~~~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 141 (571)
++++..|+ .++|+.++.|++.|+++|++||||+||||||+++.|+|+|||||+||+|+|+++||. |+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~----akll~eva~ 75 (524)
T COG0459 2 MGKERKFG--EDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPG----AKLLVEVAK 75 (524)
T ss_pred Cccccccc--HHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCch----hHHHHHHHH
Confidence 47889999 999999999999999999999999999999999977999999999999999999997 999999999
Q ss_pred hcccccCCcccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCch--HHHHHHHhh-----cC
Q 008279 142 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS--ELADVAAVS-----AG 214 (571)
Q Consensus 142 ~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~--~L~~va~ts-----~~ 214 (571)
+||+++||||||+|||+++||+++.+++++|+||+.|++||++|.+.++++|+++++++++. +. +++.++ .+
T Consensus 76 ~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~-~~~~t~v~sk~~~ 154 (524)
T COG0459 76 KQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEEL-KIAITSVASKSAN 154 (524)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhh-hhhhheeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999865 22 444443 45
Q ss_pred CchHHHHHHHHHHHhhcc-----CCceEEe-cCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccC
Q 008279 215 NNYEVGNMIAEAMSKVGR-----KGVVTLE-EGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI 288 (571)
Q Consensus 215 ~~~~ls~li~~Av~~v~~-----~g~I~i~-~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i 288 (571)
++++|++++++|+.+++. ++++.++ .|++..|+ ++++||+|++||.+|||.++ +.++||+||++|++|
T Consensus 155 ~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~-~vveG~~~dkg~~s~~~~~~-----~~~e~~~Ili~d~~l 228 (524)
T COG0459 155 SDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETEL-EVVEGMVFDKGYLSPYFMPD-----KRLENPKILLLDKKL 228 (524)
T ss_pred ChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccce-EEEeeEEecCCccCCCCCCc-----cccccceEEEEcccc
Confidence 568999999999999998 7776664 55566665 99999999999999997543 688999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecccCc
Q 008279 289 TNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGL 368 (571)
Q Consensus 289 ~~~~~l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~ 368 (571)
+..+..++ ++...+.+.|++++.+++++++|..++.|.+++..+++||+.|+|++.++++|++++++|+.++.+++.+
T Consensus 229 ~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~- 306 (524)
T COG0459 229 EIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG- 306 (524)
T ss_pred ccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhH-
Confidence 99988888 7877888889999999998889999999999999999999999999999999999999999999887653
Q ss_pred cccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHhhcCCeEEEEEccCCH
Q 008279 369 ALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENA-EQDYEREKLNERIAKLSGGVAVIQVGAQTE 447 (571)
Q Consensus 369 ~~~~~~~~~lG~~~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~-~~~~e~~~l~er~~~l~g~~~tI~vrG~t~ 447 (571)
+ ....+|.|..|...++.+....|.+. ..++++. .++|+++++++|.+. .+++|||+|||+|+
T Consensus 307 --~--~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~~~~~~~~~~~~~~~~-~~~~~tI~vrgate 370 (524)
T COG0459 307 --E--RLAKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETKTGDYDMEKLQERKAK-AGGVATILVRGATE 370 (524)
T ss_pred --H--HHHHccCceEEeecccCceeecCccc-----------cceEEEeeccchhhhhhhhhhhc-CCCeEEEEECCccH
Confidence 1 34567777777776666655554320 1122333 567888999999888 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHhHHHHHHHHHcCCChH
Q 008279 448 TELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGS 526 (571)
Q Consensus 448 ~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~ 526 (571)
.+++|+||+++|||+++|+++++| +|||||++|+++++.|++++.+.++.++++++++|++||+.||++|++|||+|+.
T Consensus 371 ~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~ 450 (524)
T COG0459 371 VELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPI 450 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999 9999999999999999998434444345699999999999999999999999999
Q ss_pred HHHHHHHhcCC-CceeEEcCCCcc-cchhhcCcccchhHH-HHHHhcC
Q 008279 527 VVSEKVLSSDN-HKYGYNAATGNY-EDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 527 ~vi~kl~~~~~-~~~Gid~~~~~i-~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
+++.+|++.|+ +++|||+.++++ .||++.|||||+.|| ++|++|+
T Consensus 451 ~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~ 498 (524)
T COG0459 451 EVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAA 498 (524)
T ss_pred HHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHHHHHHHH
Confidence 99999998776 569999999999 779999999999999 9999984
No 22
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.5e-86 Score=731.82 Aligned_cols=436 Identities=23% Similarity=0.362 Sum_probs=393.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcc
Q 008279 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (571)
Q Consensus 72 ~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGT 151 (571)
.++|+.++.||..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 26 ~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~----akll~~~a~~qd~~~GDGT 101 (532)
T TIGR02343 26 LEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPI----AKLMVELSKSQDDEIGDGT 101 (532)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHH----HHHHHHHHHHHHHHhcCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCc----h-HHHHHHHhhcCC------chHHH
Q 008279 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED----S-ELADVAAVSAGN------NYEVG 220 (571)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~----~-~L~~va~ts~~~------~~~ls 220 (571)
||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++++++. . .|.++|+++++. .+.|+
T Consensus 102 ttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls 181 (532)
T TIGR02343 102 TGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFA 181 (532)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999998753 3 799999998764 46899
Q ss_pred HHHHHHHHhhccC--C-----c--eEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeeccc----
Q 008279 221 NMIAEAMSKVGRK--G-----V--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK---- 287 (571)
Q Consensus 221 ~li~~Av~~v~~~--g-----~--I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~---- 287 (571)
+++++|+..+... + . |...+|++++|+ ++++|++|+++|.+|+| +..++||||++++++
T Consensus 182 ~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds-~~v~Gi~i~~~~~~~~m-------~~~~~n~kI~l~~~~le~~ 253 (532)
T TIGR02343 182 EIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDT-KLIKGIIIDKDFSHPQM-------PKEVKDAKIAILTCPFEPP 253 (532)
T ss_pred HHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccc-eeEeeEEEecCcCCCCC-------CeeecCCcEEEEEeecccc
Confidence 9999999988531 1 2 334699999999 99999999999999874 556778899888764
Q ss_pred ---------CCCHHHH-----------HHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcch
Q 008279 288 ---------ITNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKS 347 (571)
Q Consensus 288 ---------i~~~~~l-----------~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~ 347 (571)
+++++++ .++++++++.|+||||++++|+++++++|..|+ +.+|++ +++
T Consensus 254 ~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~------i~~v~~-----~~~ 322 (532)
T TIGR02343 254 KPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQND------LPAVRW-----VGG 322 (532)
T ss_pred ccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCC------cEEEEc-----CCH
Confidence 4566655 677999999999999999999999999999984 466764 446
Q ss_pred hhHHHHHHHhCCeEeecccCccccCCCCCCceeeeEEEE---ec--ceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHH
Q 008279 348 QYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TK--DTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYE 422 (571)
Q Consensus 348 ~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~i---~~--~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e 422 (571)
.+|+|||++|||++++ ++++++++.||+|++|+. +. ++++++++|+++
T Consensus 323 ~~l~~Ia~~tGa~~i~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~---------------------- 375 (532)
T TIGR02343 323 HELELIAIATGGRIVP-----RFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNS---------------------- 375 (532)
T ss_pred HHHHHHHHHhCCEEec-----ccccCCHhHCcccceEEEEEecCCcceEEEEECCCCC----------------------
Confidence 7899999999999999 588899999999999973 22 578999988753
Q ss_pred HHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHH
Q 008279 423 REKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKV 501 (571)
Q Consensus 423 ~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~ 501 (571)
.++||+|||+|+.+++|.||+++||+++++++++++ +|||||++|++++++|++++.++++.+| +
T Consensus 376 -------------~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~ 441 (532)
T TIGR02343 376 -------------KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQ-Y 441 (532)
T ss_pred -------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHH-H
Confidence 389999999999999999999999999999999996 9999999999999999998877777775 8
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcC----CCceeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 502 GADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD----NHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 502 ~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~----~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
++++|++||+.||++||+|||+|+.+++.+|++.| +.++|||+.+|++.||++.|||||+.|| ++|+.|+
T Consensus 442 ~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~ 516 (532)
T TIGR02343 442 AIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLAT 516 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHHHHHHHHHHHH
Confidence 99999999999999999999999999999997532 4579999999999999999999999999 9999884
No 23
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.2e-86 Score=731.75 Aligned_cols=436 Identities=21% Similarity=0.312 Sum_probs=395.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcc
Q 008279 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (571)
Q Consensus 72 ~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGT 151 (571)
++++..++.+|..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+ |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----akll~~~a~~q~~~~GDGT 90 (525)
T TIGR02344 15 RKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGT 90 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHhhhhhccCCc
Confidence 779999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccC--ch-HHHHHHHhhcCC------chHHHHH
Q 008279 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGN------NYEVGNM 222 (571)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~-~L~~va~ts~~~------~~~ls~l 222 (571)
||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ +. .|.++|+|+++. ++.|+++
T Consensus 91 tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l 170 (525)
T TIGR02344 91 TSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDL 170 (525)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 33 799999887543 5899999
Q ss_pred HHHHHHhhccCC-----------ceEE--ecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCC
Q 008279 223 IAEAMSKVGRKG-----------VVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT 289 (571)
Q Consensus 223 i~~Av~~v~~~g-----------~I~i--~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~ 289 (571)
+++|+..+++++ .|++ .+|++++|+ ++++|++|++++.++ +|+.+++||+|+++++++.
T Consensus 171 ~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS-~lv~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le 242 (525)
T TIGR02344 171 ALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDS-CVLKGVMINKDVTHP-------KMRRYIENPRIVLLDCPLE 242 (525)
T ss_pred HHHHHHHhhccccCCCCccChhhceEEEEecCCChHhc-CcccceEEecccCCC-------CCccccCCCCEEEEecccc
Confidence 999999998653 1333 579999998 899999999997764 4788899999999999864
Q ss_pred C-------------HHHHHHH-----------HHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCc
Q 008279 290 N-------------ARDLINV-----------LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (571)
Q Consensus 290 ~-------------~~~l~~~-----------le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~ 345 (571)
. ++++.++ ++++.+.|++|||+++.|++.++++|..+ +|+|++ ++
T Consensus 243 ~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~------~I~av~-----~v 311 (525)
T TIGR02344 243 YKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKA------NISAIR-----RV 311 (525)
T ss_pred cccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CceEEe-----cC
Confidence 4 4566554 44888999999999999999999988774 567765 77
Q ss_pred chhhHHHHHHHhCCeEeecccCccccCCCCCCcee-eeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHH
Q 008279 346 KSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN-ASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (571)
Q Consensus 346 ~~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~-~~~v~i---~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~ 421 (571)
++++|+|||++|||++++ ++++++++.||+ |+.|++ ++++|++|++|+++
T Consensus 312 ~~~~LerIa~~tGa~ii~-----~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~--------------------- 365 (525)
T TIGR02344 312 RKTDNNRIARACGATIVN-----RPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP--------------------- 365 (525)
T ss_pred CHHHHHHHHHHhCCeEec-----chhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC---------------------
Confidence 899999999999999998 588899999999 998886 56789999988653
Q ss_pred HHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhH
Q 008279 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (571)
Q Consensus 422 e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~ 500 (571)
..|||+|||+|+.+++|.||+++||+++++++++++ +|||||++|+++|.+|++++.+.++.++
T Consensus 366 --------------~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~- 430 (525)
T TIGR02344 366 --------------KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQ- 430 (525)
T ss_pred --------------CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHH-
Confidence 489999999999999999999999999999999996 9999999999999999998877777765
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcC----CCceeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD----NHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 501 ~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~----~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
+++++|++||+.||++||+|||+|+.+++.+|+..| +.++|||+.+|++.||++.|||||+.|| ++|+.|+
T Consensus 431 ~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~ 506 (525)
T TIGR02344 431 WPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAI 506 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHHHHH
Confidence 899999999999999999999999999999998643 4579999999999999999999999999 9999884
No 24
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.2e-86 Score=729.76 Aligned_cols=443 Identities=21% Similarity=0.322 Sum_probs=393.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcc
Q 008279 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (571)
Q Consensus 72 ~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGT 151 (571)
.+++..++.+|..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||+++||||
T Consensus 8 ~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~~~a~~qd~~~GDGT 83 (517)
T TIGR02342 8 TDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPA----AKMLVELSKAQDIEAGDGT 83 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChH----HHHHHHHHHHHHHHhCCCc
Confidence 567899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccC--ch-HHHHHHHhhcCC------chHHHHH
Q 008279 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGN------NYEVGNM 222 (571)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~-~L~~va~ts~~~------~~~ls~l 222 (571)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|++ +. .|.++|+|++++ .+.|+++
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l 163 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPL 163 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 44 799999998764 4678999
Q ss_pred HHHHHHhhccC---Cc-----eEE--ecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccC----
Q 008279 223 IAEAMSKVGRK---GV-----VTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI---- 288 (571)
Q Consensus 223 i~~Av~~v~~~---g~-----I~i--~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i---- 288 (571)
+++|+..++++ +. |++ ..|++..|+ ++++|++|+++|.++ .+|++.++||+|+++++++
T Consensus 164 ~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds-~li~Givl~k~~~~~------~~mpk~i~n~kI~ll~~~Le~~~ 236 (517)
T TIGR02342 164 AVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDT-ELIEGLVFTQKASRS------AGGPTRIEKAKIGLIQFQISPPK 236 (517)
T ss_pred HHHHHHHHhccccCCccCHHHeeEEeccCCChhhc-EEEeeEEEecccccc------CCCCccccCCcEEEEecCCCCCc
Confidence 99999999752 32 333 489999998 899999999999874 2467778999999998764
Q ss_pred ---------CCH-----------HHHHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchh
Q 008279 289 ---------TNA-----------RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348 (571)
Q Consensus 289 ---------~~~-----------~~l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~ 348 (571)
+++ +++.++++++++.|+|||||+++|++++++.++.|.+.+ .+|+||+ +++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~-~~I~av~-----~v~~~ 310 (517)
T TIGR02342 237 TDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAK-MKIMVVK-----DIERE 310 (517)
T ss_pred ccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhh-CCceEEe-----cCCHH
Confidence 232 245668899999999999999999655555555555544 5889887 66789
Q ss_pred hHHHHHHHhCCeEeecccCccccCCCCCCceeeeEEE-E--ecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHH
Q 008279 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV-L--TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREK 425 (571)
Q Consensus 349 ~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~-i--~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~ 425 (571)
+|+|||++|||++++ +++++++++||+|+.|+ + +++.++++.++.+
T Consensus 311 ~LerIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~-------------------------- 359 (517)
T TIGR02342 311 EVEFICKTIGCKPIA-----SIDHFTADKLGSAELVEEVTTDGGKIIKITGIQN-------------------------- 359 (517)
T ss_pred HHHHHHHHHCCEEEc-----chhhcCcccCcCCceEEEEEECCeEEEEEEccCC--------------------------
Confidence 999999999999999 58888899999999998 3 3556777877643
Q ss_pred HHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHHH
Q 008279 426 LNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGAD 504 (571)
Q Consensus 426 l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~ 504 (571)
+++++||+|||+|+.+++|++|+++||+++++++++++ +|||||++|++++.+|++++++.++.+| ++++
T Consensus 360 --------~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i~ 430 (517)
T TIGR02342 360 --------AGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVES-YCVR 430 (517)
T ss_pred --------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHH-HHHH
Confidence 24689999999999999999999999999999999986 9999999999999999999877777765 8999
Q ss_pred HHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCceeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 505 IVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 505 ~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~---~~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
+|++||+.||++||+|||+|+.+++.+|+.. ++.++|||+.+|++.||++.|||||+.|| ++|++|+
T Consensus 431 ~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~ 501 (517)
T TIGR02342 431 AFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLAS 501 (517)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhhccceEcHHHHHHHHHHHH
Confidence 9999999999999999999999999999864 35689999999999999999999999999 9999984
No 25
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.9e-86 Score=729.12 Aligned_cols=439 Identities=21% Similarity=0.337 Sum_probs=399.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcc
Q 008279 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (571)
Q Consensus 72 ~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGT 151 (571)
.+++..++.+|..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++|++++||||
T Consensus 15 ~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~~~~GDGT 90 (522)
T cd03340 15 KGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPA----AKTLVDIAKSQDAEVGDGT 90 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHH----HHHHHHHHHHhHhHhCCCh
Confidence 678899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCc------h-HHHHHHHhhcC------CchH
Q 008279 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED------S-ELADVAAVSAG------NNYE 218 (571)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~------~-~L~~va~ts~~------~~~~ 218 (571)
||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++ . .|.++|+++++ ++++
T Consensus 91 tt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ 170 (522)
T cd03340 91 TSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEF 170 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHH
Confidence 999999999999999999999999999999999999999999999998864 3 69999999876 4689
Q ss_pred HHHHHHHHHHhhccCC---c--eEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccC-----
Q 008279 219 VGNMIAEAMSKVGRKG---V--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI----- 288 (571)
Q Consensus 219 ls~li~~Av~~v~~~g---~--I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i----- 288 (571)
|++++++|+.++++++ . |...+|+++.|+ ++++|++|+++|.+|+|. +|++.++||+|+++++++
T Consensus 171 l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds-~lv~Giv~~k~~~~~~~~----~~~~~~~n~kIll~~~~Le~~~~ 245 (522)
T cd03340 171 FAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDS-QLVNGVAFKKTFSYAGFE----QQPKKFKNPKILLLNVELELKAE 245 (522)
T ss_pred HHHHHHHHHHHhcccCChhHheEeeecCCChhhc-eeeeeEEEecccCccccc----cCCccccCCeEEEEeCCCCCCcc
Confidence 9999999999998765 2 333589999999 899999999999999874 356679999999999873
Q ss_pred --------CCHHH-----------HHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhh
Q 008279 289 --------TNARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQY 349 (571)
Q Consensus 289 --------~~~~~-----------l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~ 349 (571)
+++.+ +.++++.+++.|+++|+++++|+|.++++|..+ +|++++ ++++++
T Consensus 246 ~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~------~I~~~~-----~v~~~~ 314 (522)
T cd03340 246 KDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADR------DIFCAG-----RVPEED 314 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHC------CcEEEE-----eCCHHH
Confidence 45443 456688899999999999999999999999887 446654 567899
Q ss_pred HHHHHHHhCCeEeecccCccccCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHH
Q 008279 350 LDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKL 426 (571)
Q Consensus 350 L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l 426 (571)
|+|||++|||++++ ++++++++.||+|+.|+ ++++++++|.+|+.+
T Consensus 315 l~rIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-------------------------- 363 (522)
T cd03340 315 LKRVAQATGGSIQT-----TVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKA-------------------------- 363 (522)
T ss_pred HHHHHHHHCCEEee-----ccccCCccccccceEEEEEEECCEEEEEEECCCCC--------------------------
Confidence 99999999999998 58889999999999998 567789999988643
Q ss_pred HHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHHHH
Q 008279 427 NERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADI 505 (571)
Q Consensus 427 ~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~ 505 (571)
..+||++||+|+..++|.||+++||++++++++++| +|||||++|++++.+|++++++..++++ +++++
T Consensus 364 ---------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~-~~~~~ 433 (522)
T cd03340 364 ---------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQ-LVINA 433 (522)
T ss_pred ---------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHH-HHHHH
Confidence 478999999999999999999999999999999998 9999999999999999998877767665 89999
Q ss_pred HHHHHhHHHHHHHHHcCCChHHHHHHHHhcC---C-CceeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 506 VKRALCYPLKLIAKNAGVNGSVVSEKVLSSD---N-HKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 506 ~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~---~-~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
|++||+.||++|++|||+|+.+++.+|++.| + .++|||+.+|++.||++.|||||+.|| ++|+.|+
T Consensus 434 fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~ 504 (522)
T cd03340 434 FAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAAT 504 (522)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHH
Confidence 9999999999999999999999999998643 3 579999999999999999999999999 9999884
No 26
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.5e-85 Score=721.54 Aligned_cols=435 Identities=23% Similarity=0.334 Sum_probs=392.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceeeecC--CCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCC
Q 008279 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESK--YGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGD 149 (571)
Q Consensus 72 ~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~--~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GD 149 (571)
+++|+.++.||..++++|+|||||+||+|||+++ +|+++|||||+||+++|+++||. |+|++++|++||+++||
T Consensus 12 ~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~qd~~~GD 87 (517)
T cd03336 12 ETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPA----AKVLVDISKVQDDEVGD 87 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHHHhHhCC
Confidence 7899999999999999999999999999999998 59999999999999999999997 99999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccC-----ch-HHHHHHHhhcC------Cch
Q 008279 150 GTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-----DS-ELADVAAVSAG------NNY 217 (571)
Q Consensus 150 GTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~-----~~-~L~~va~ts~~------~~~ 217 (571)
||||+|||+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ +. .|.++|+|+++ +++
T Consensus 88 GTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~ 167 (517)
T cd03336 88 GTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKE 167 (517)
T ss_pred ChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHH
Confidence 9999999999999999999999999999999999999999999999999984 12 78999997654 368
Q ss_pred HHHHHHHHHHHhhccC---Cc--eEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCC---
Q 008279 218 EVGNMIAEAMSKVGRK---GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT--- 289 (571)
Q Consensus 218 ~ls~li~~Av~~v~~~---g~--I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~--- 289 (571)
+|++|+++|+.+++.. .. |...+|++++|+ ++++|+++++++.++ |+++++||+|++++++|+
T Consensus 168 ~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds-~l~~G~v~~~~~~~~--------~~~~~~n~kIli~~~~le~~~ 238 (517)
T cd03336 168 HFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDS-YLDEGFLLDKKIGVN--------QPKRIENAKILIANTPMDTDK 238 (517)
T ss_pred HHHHHHHHHHHHhhccCCccceeEEEccCCCccce-EEEeeEEEecccCCC--------CCCeeccccEEEEecCCCccc
Confidence 9999999999999632 22 334589999999 899999999886432 577899999999999764
Q ss_pred -----------CHHHH-----------HHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcch
Q 008279 290 -----------NARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKS 347 (571)
Q Consensus 290 -----------~~~~l-----------~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~ 347 (571)
+++++ .++++.+++.|++++++++.|++.++++|..+ +|+||++|+ +
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~------~I~av~~v~-----~ 307 (517)
T cd03336 239 IKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADA------GIMAIEHAD-----F 307 (517)
T ss_pred ccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CcEEEecCC-----H
Confidence 55544 23577889999999999999999999998876 678998776 5
Q ss_pred hhHHHHHHHhCCeEeecccCccccCCCCCCceeeeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHH
Q 008279 348 QYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYERE 424 (571)
Q Consensus 348 ~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~ 424 (571)
.+|+|||++|||++++ ++++++++.||+|+.|+. +++++++|.+|++
T Consensus 308 ~~L~rIa~~tGa~ii~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~------------------------- 357 (517)
T cd03336 308 DGVERLALVTGGEIAS-----TFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAA------------------------- 357 (517)
T ss_pred HHHHHHHHHhCCEEec-----ccCCCCcccccccceEEEEEECCeEEEEEEccCC-------------------------
Confidence 6799999999999998 588899999999999974 4678999988754
Q ss_pred HHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHH
Q 008279 425 KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGA 503 (571)
Q Consensus 425 ~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~ 503 (571)
++.|||+|||+|+.+++|.||+++||++++++++++| +|||||++|++++.+|++++++..++++ +++
T Consensus 358 ----------~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i 426 (517)
T cd03336 358 ----------GEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKS-LAI 426 (517)
T ss_pred ----------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHH-HHH
Confidence 3589999999999999999999999999999999998 9999999999999999999877777766 899
Q ss_pred HHHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCceeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 504 DIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 504 ~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~---~~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
++|++||+.||++||+|||+|+.+++.+|+.. ++.++|||+.+|++.||++.|||||+.|| ++|+.|+
T Consensus 427 ~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~ 498 (517)
T cd03336 427 EAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSAS 498 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHHHHHHHHHHHH
Confidence 99999999999999999999999999999764 35679999999999999999999999999 9999884
No 27
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.4e-85 Score=724.44 Aligned_cols=438 Identities=21% Similarity=0.319 Sum_probs=395.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcc
Q 008279 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (571)
Q Consensus 72 ~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGT 151 (571)
.+++..++.+|.+++++|+|||||+||+|||+++.| ++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 17 ~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~----a~ll~~~a~~q~~~~GDGT 91 (522)
T TIGR02345 17 KGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPA----AKTLVDIAKSQDSEVGDGT 91 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChH----HHHHHHHHHHHHHHhCCCc
Confidence 779999999999999999999999999999999999 99999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccC-----ch-HHHHHHHhhcC------CchHH
Q 008279 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-----DS-ELADVAAVSAG------NNYEV 219 (571)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~-----~~-~L~~va~ts~~------~~~~l 219 (571)
||+|||+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ +. .|.++|+|+++ ++++|
T Consensus 92 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l 171 (522)
T TIGR02345 92 TSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFF 171 (522)
T ss_pred hhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999987 33 79999999876 57899
Q ss_pred HHHHHHHHHhhccCC------ceEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCC----
Q 008279 220 GNMIAEAMSKVGRKG------VVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT---- 289 (571)
Q Consensus 220 s~li~~Av~~v~~~g------~I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~---- 289 (571)
++++++|+.++++++ .|...+|++++|+ ++++|++|+++|.+|+|. +|+.+++||+|+++|++++
T Consensus 172 ~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds-~~v~Giv~~~~~~~~~~~----~~~~~~~n~kIll~~~~Le~~~~ 246 (522)
T TIGR02345 172 SKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDS-VLVNGVAFKKTFSYAGFE----QQPKKFANPKILLLNVELELKAE 246 (522)
T ss_pred HHHHHHHHHHHhhccCChhHheEEeecCCCHHhc-ceecceEEecccCccccc----cCCceeccceEEEEecCcccCcc
Confidence 999999999998652 1333489999999 799999999999999875 3667899999999998753
Q ss_pred ---------CHHH-----------HHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhh
Q 008279 290 ---------NARD-----------LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQY 349 (571)
Q Consensus 290 ---------~~~~-----------l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~ 349 (571)
++++ +.+.++.+.+.|+++|+++++|++.++++|..+ +|++++ ++.+.+
T Consensus 247 ~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~------~I~~~~-----~v~~~d 315 (522)
T TIGR02345 247 KDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADH------NIFCAG-----RVSDED 315 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHC------CcEEEe-----cCCHHH
Confidence 3333 244567788899999999999999999999886 456654 666889
Q ss_pred HHHHHHHhCCeEeecccCccccCCCCCCceeeeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHH
Q 008279 350 LDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKL 426 (571)
Q Consensus 350 L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l 426 (571)
+++|+++|||++++ ++++++++.||+|+.++. .++++++|.+|+++
T Consensus 316 l~ria~~tga~ii~-----~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~-------------------------- 364 (522)
T TIGR02345 316 LKRVVKACGGSIQS-----TTSDLEADVLGTCALFEERQIGSERYNYFTGCPHA-------------------------- 364 (522)
T ss_pred HHHHHHHhCCeEEc-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC--------------------------
Confidence 99999999999998 588888899999999975 36788999887543
Q ss_pred HHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHHHH
Q 008279 427 NERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADI 505 (571)
Q Consensus 427 ~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~ 505 (571)
.+|||+|||+|+.+++|++|+++||++++|++++++ +|||||++|++++.+|++++++..+.++ +++++
T Consensus 365 ---------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~-~~i~~ 434 (522)
T TIGR02345 365 ---------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQ-LIIEA 434 (522)
T ss_pred ---------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHH-HHHHH
Confidence 489999999999999999999999999999999985 9999999999999999998777777665 89999
Q ss_pred HHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCceeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 506 VKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 506 ~~~AL~~ip~~La~NaG~d~~~vi~kl~~~---~~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
|++||+.||++||+|||+|+.+++.+|++. ++.++|||+.+|++.||++.|||||+.|| ++|+.|+
T Consensus 435 ~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~ 504 (522)
T TIGR02345 435 FAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAF 504 (522)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHHHHHHHHHHHH
Confidence 999999999999999999999999999864 34579999999999999999999999999 9999884
No 28
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=5e-85 Score=723.19 Aligned_cols=435 Identities=21% Similarity=0.350 Sum_probs=393.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceeeecC-----CCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccc
Q 008279 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESK-----YGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDL 146 (571)
Q Consensus 72 ~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~-----~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~ 146 (571)
+++|+.++.||..++++|+|||||+||+|||+++ +|+++|||||+||+|+|+++||. |+|++++|++||++
T Consensus 21 ~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~----akll~~~a~~qd~~ 96 (533)
T PTZ00212 21 ETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPA----AKILVDISKTQDEE 96 (533)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHhhhhh
Confidence 7899999999999999999999999999999998 69999999999999999999997 99999999999999
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCc-----h-HHHHHHHhhcCC-----
Q 008279 147 AGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-----S-ELADVAAVSAGN----- 215 (571)
Q Consensus 147 ~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~-----~-~L~~va~ts~~~----- 215 (571)
+||||||+|+|+++||+++.+++++|+||..|++||++|.+.++++|+++++|+++ . +|.++|+|+++.
T Consensus 97 ~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~ 176 (533)
T PTZ00212 97 VGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTV 176 (533)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccccch
Confidence 99999999999999999999999999999999999999999999999999999864 3 789999977543
Q ss_pred -chHHHHHHHHHHHhhccC---Cc--eEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccC-
Q 008279 216 -NYEVGNMIAEAMSKVGRK---GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI- 288 (571)
Q Consensus 216 -~~~ls~li~~Av~~v~~~---g~--I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i- 288 (571)
.+.|++++++|+..+... .. |...+|++++|+ ++++|+++++++.+ .|+++++||+|+++|++|
T Consensus 177 ~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds-~lv~G~v~~~~~~~--------~~~~~i~n~kIll~~~~Le 247 (533)
T PTZ00212 177 EKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDS-YLEDGFILEKKIGV--------GQPKRLENCKILVANTPMD 247 (533)
T ss_pred hHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcccc-EEEEeEEEecccCC--------CCCccccCCcEEEEeCCCC
Confidence 478999999999998542 12 444699999999 89999999998643 257789999999999986
Q ss_pred -------------CCHHHHH-----------HHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccC
Q 008279 289 -------------TNARDLI-----------NVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGE 344 (571)
Q Consensus 289 -------------~~~~~l~-----------~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~ 344 (571)
++++++. ++++.+++.|+++++++++|++.++++|.++ +|+||+ +
T Consensus 248 ~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~------~I~avr-----~ 316 (533)
T PTZ00212 248 TDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEA------GIMAIE-----H 316 (533)
T ss_pred CCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CCEEEe-----c
Confidence 5655542 2467889999999999999999999998876 568887 4
Q ss_pred cchhhHHHHHHHhCCeEeecccCccccCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHH
Q 008279 345 RKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (571)
Q Consensus 345 ~~~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~ 421 (571)
+++.+++|||++|||++++ ++++++++.||+|+.|+ +++++|++|++|..
T Consensus 317 v~~~~l~rIa~~tGa~iis-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~---------------------- 369 (533)
T PTZ00212 317 ADFDGMERLAAALGAEIVS-----TFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK---------------------- 369 (533)
T ss_pred CCHHHHHHHHHHhCCEEee-----cCCCCCHHHccCCceEEEEEECCeEEEEEEccCC----------------------
Confidence 4578999999999999998 58888999999999998 67889999988753
Q ss_pred HHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhH
Q 008279 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (571)
Q Consensus 422 e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~ 500 (571)
++.|||+|||+|+.+++|+||+++||++++|+++++| +||||||+|++++.+|++++++..+.++
T Consensus 370 -------------~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~- 435 (533)
T PTZ00212 370 -------------GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKS- 435 (533)
T ss_pred -------------CCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHH-
Confidence 3589999999999999999999999999999999998 9999999999999999999877777666
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCceeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 501 ~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~---~~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
+++++|++||+.||++|++|||+|+.+++.+|+.. ++.++|||+.+|++.||++.|||||+.|| ++|+.|+
T Consensus 436 ~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~ 510 (533)
T PTZ00212 436 LAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSAT 510 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCcccchhhccceecHHHHHHHHHHHH
Confidence 89999999999999999999999999999999753 35679999999999999999999999999 9999884
No 29
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.6e-85 Score=713.31 Aligned_cols=419 Identities=22% Similarity=0.335 Sum_probs=383.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcc
Q 008279 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (571)
Q Consensus 72 ~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGT 151 (571)
++++..++.++..++++++|||||+||+|||+++.|+++|||||+||+++|+++||. |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~~~~GDGT 90 (480)
T cd03337 15 RKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGT 90 (480)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHhHHHHhCCCc
Confidence 779999999999999999999999999999999999999999999999999999997 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccC--ch-HHHHHHHhhcC------CchHHHHH
Q 008279 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAG------NNYEVGNM 222 (571)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~-~L~~va~ts~~------~~~~ls~l 222 (571)
||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ +. .|.++++++++ +++.|+++
T Consensus 91 tt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~l 170 (480)
T cd03337 91 TSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNL 170 (480)
T ss_pred chhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 44 89999999877 45799999
Q ss_pred HHHHHHhhccC--C---------ceEE--ecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCC
Q 008279 223 IAEAMSKVGRK--G---------VVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT 289 (571)
Q Consensus 223 i~~Av~~v~~~--g---------~I~i--~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~ 289 (571)
+++|+..++++ + .|++ .+|+++.|+ ++++|++|++++.+| +|+++++||+|+++++++.
T Consensus 171 v~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds-~li~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le 242 (480)
T cd03337 171 ALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDS-RVLDGVMLNKDVTHP-------KMRRRIENPRIVLLDCPLE 242 (480)
T ss_pred HHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhc-ccccceEEeccCCCC-------CCCcEecCCCEEEEecCcc
Confidence 99999999764 2 1333 579999998 999999999998876 4788999999999999976
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecccCcc
Q 008279 290 NARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLA 369 (571)
Q Consensus 290 ~~~~l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~ 369 (571)
. |||++++|+++++++|..| +|++|+ ++++++|+|||++|||++++ +
T Consensus 243 ~-----------------lvi~~k~I~d~al~~L~~~------~I~~v~-----~v~~~~L~rIa~~tGa~ii~-----~ 289 (480)
T cd03337 243 Y-----------------LVITEKGVSDLAQHYLVKA------GITALR-----RVRKTDNNRIARACGATIVN-----R 289 (480)
T ss_pred e-----------------EEEeCCCccHHHHHHHHHC------CcEEEE-----eCCHHHHHHHHHHHCCEEec-----c
Confidence 5 9999999999999999987 568887 56789999999999999998 5
Q ss_pred ccCCCCCCcee-eeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCeEEEEEccC
Q 008279 370 LDKVGKEVLGN-ASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQ 445 (571)
Q Consensus 370 ~~~~~~~~lG~-~~~v~i---~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~er~~~l~g~~~tI~vrG~ 445 (571)
+++++++.||+ |+.++. +++.++++++|+++ +.|||+|||+
T Consensus 290 ~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------------------~~~TIllrG~ 334 (480)
T cd03337 290 PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP-----------------------------------KACTILLRGA 334 (480)
T ss_pred hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC-----------------------------------CEEEEEEECC
Confidence 88888999999 555543 45788999888653 4899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHhHHHHHHHHHcCCC
Q 008279 446 TETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVN 524 (571)
Q Consensus 446 t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~~AL~~ip~~La~NaG~d 524 (571)
|+.+++|.||+++||+++++++++++ +|||||++||+++.+|++++++.++.++ +++++|++||+.||++||+|||+|
T Consensus 335 t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~-~~~~~~a~al~~ip~~La~NaG~d 413 (480)
T cd03337 335 SKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQ-WPYKAVASALEVIPRTLAQNCGAN 413 (480)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999996 9999999999999999998877777776 899999999999999999999999
Q ss_pred hHHHHHHHHhcC----CCceeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 525 GSVVSEKVLSSD----NHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 525 ~~~vi~kl~~~~----~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
+.+++.+|++.| +.++|||+.+|++.||++.|||||+.+| ++|+.|+
T Consensus 414 ~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~ 465 (480)
T cd03337 414 VIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAI 465 (480)
T ss_pred HHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHHHHH
Confidence 999999998643 4579999999999999999999999999 9999884
No 30
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-84 Score=719.39 Aligned_cols=435 Identities=23% Similarity=0.319 Sum_probs=388.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcc
Q 008279 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (571)
Q Consensus 72 ~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGT 151 (571)
++++..++.+|..|+++|++||||+||||||+++.|+++|||||+||+|+|+++||+ |+|++++|++||+++||||
T Consensus 17 ~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~e~a~sqd~~~GDGT 92 (531)
T TIGR02346 17 EEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPA----AKLLVMASEMQENEIGDGT 92 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHH----HHHHHHHHHHHhhhhCCCh
Confidence 458999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhccc-ccCc---h-HHHHHHHhhcC-----CchHHHH
Q 008279 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVED---S-ELADVAAVSAG-----NNYEVGN 221 (571)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~-~v~~---~-~L~~va~ts~~-----~~~~ls~ 221 (571)
||+|||+++||+++.+++++|+||..|++||+.|.+.++++|+++++ ++++ . .|.++++++++ +++.|++
T Consensus 93 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~ 172 (531)
T TIGR02346 93 NLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQ 172 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999986 7744 3 78999888763 3889999
Q ss_pred HHHHHHHhhccCC--c-----eE--EecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccC----
Q 008279 222 MIAEAMSKVGRKG--V-----VT--LEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI---- 288 (571)
Q Consensus 222 li~~Av~~v~~~g--~-----I~--i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i---- 288 (571)
|+++|+.++++++ . |. ..+|++++|+ ++++|++|++++. .+++.++||||+++++++
T Consensus 173 l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds-~li~Gi~~~~~~~---------~~~k~i~n~kI~l~~~~l~~~~ 242 (531)
T TIGR02346 173 LVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNS-EVLKGMVFNREAE---------GSVKRVKNAKVAVFSCPLDTAT 242 (531)
T ss_pred HHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhc-eeEeeeEEeccCC---------CCceeccCCCEEEEecCcCCCc
Confidence 9999999998654 2 22 2489999998 9999999999832 145678899999988763
Q ss_pred ---------CCHH-----------HHHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchh
Q 008279 289 ---------TNAR-----------DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348 (571)
Q Consensus 289 ---------~~~~-----------~l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~ 348 (571)
+++. ++.++++.+++.|+||||++++|++.++++|..+ +|+||++|++ .
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~------~I~av~~~~~-----~ 311 (531)
T TIGR02346 243 TETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKY------NIMVLKIPSK-----F 311 (531)
T ss_pred ccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHC------CcEEEecCCH-----H
Confidence 3333 3566789999999999999999999999988754 6899998874 5
Q ss_pred hHHHHHHHhCCeEeecccCccccCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHH
Q 008279 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREK 425 (571)
Q Consensus 349 ~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~ 425 (571)
+|+|||++|||++++ +++++++++||+|++|++. ++++.++.++..
T Consensus 312 ~l~~Ia~~tGa~ii~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~-------------------------- 360 (531)
T TIGR02346 312 ELRRLCKTVGATPLA-----RLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENG-------------------------- 360 (531)
T ss_pred HHHHHHHHHCCEEec-----ccccCCHhHccccceEEEEEECCEEEEEEEccCC--------------------------
Confidence 889999999999998 5888888999999999853 567888877532
Q ss_pred HHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHHH
Q 008279 426 LNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGAD 504 (571)
Q Consensus 426 l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~ 504 (571)
.++++||+|||+|+.+++|+||+++||++++|+++++| +||||||+|++++.+|+++++++.+.++ ++++
T Consensus 361 --------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~-~~~~ 431 (531)
T TIGR02346 361 --------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQ-YAIK 431 (531)
T ss_pred --------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHH-HHHH
Confidence 25689999999999999999999999999999999999 9999999999999999998877777655 8999
Q ss_pred HHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCceeEEcCCCc--ccchhhcCcccchhHH-HHHHhcC
Q 008279 505 IVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGN--YEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 505 ~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~---~~~~~Gid~~~~~--i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
+|++||+.||++|++|||+|+.+++.+|+.. ++.++|||+.+|+ +.||++.|||||+.|| ++|++|+
T Consensus 432 ~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~ 504 (531)
T TIGR02346 432 KFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLAT 504 (531)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHH
Confidence 9999999999999999999999999999764 3457999999999 5999999999999999 9999884
No 31
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.6e-83 Score=708.66 Aligned_cols=435 Identities=24% Similarity=0.359 Sum_probs=389.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCC--CCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCC
Q 008279 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKY--GAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGD 149 (571)
Q Consensus 72 ~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~--g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GD 149 (571)
+++++.++.|+..++++|+|||||+||+|||+++. |+++|||||+||+++|+++||. |+|++++|++||+++||
T Consensus 13 ~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~----akll~~~a~~qd~~~GD 88 (519)
T TIGR02341 13 ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPA----AKVLVDMSKVQDDEVGD 88 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHhHhhhCC
Confidence 77999999999999999999999999999999985 9999999999999999999997 99999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCc-----h-HHHHHHHhhcCC------ch
Q 008279 150 GTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-----S-ELADVAAVSAGN------NY 217 (571)
Q Consensus 150 GTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~-----~-~L~~va~ts~~~------~~ 217 (571)
||||+|||+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++ . +|.++|+|+++. .+
T Consensus 89 GTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~ 168 (519)
T TIGR02341 89 GTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKD 168 (519)
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999853 2 789999988654 47
Q ss_pred HHHHHHHHHHHhhccC---CceEE--ecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCCC--
Q 008279 218 EVGNMIAEAMSKVGRK---GVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITN-- 290 (571)
Q Consensus 218 ~ls~li~~Av~~v~~~---g~I~i--~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~~-- 290 (571)
.|++++++|+..+... ..|.+ .+|++++|+ ++++|+++++++.+ +|+++++||+|+++|++|+.
T Consensus 169 ~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s-~l~~G~v~~~~~~~--------~~~~~~~n~~Ili~~~~Le~~~ 239 (519)
T TIGR02341 169 HFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDS-YLDEGFLLEKKIGV--------NQPKRIENAKILIANTPMDTDK 239 (519)
T ss_pred HHHHHHHHHHHHhccCCChhheEEEEccCCCcccc-eEEeeEEEeccCCC--------CCceeeccccEEEEecCCCCCc
Confidence 8999999999998432 23444 489999999 89999999988543 25678999999999997642
Q ss_pred ------------HHHH-----------HHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcch
Q 008279 291 ------------ARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKS 347 (571)
Q Consensus 291 ------------~~~l-----------~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~ 347 (571)
++++ ..+++.+++.|++++++++.|++.++++|..+ +|+||++++ +
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~------~I~~v~~~~-----~ 308 (519)
T TIGR02341 240 VKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADA------GVMAIEHAD-----F 308 (519)
T ss_pred cccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHC------CcEEEecCC-----H
Confidence 3333 22477889999999999999999999988775 678998776 5
Q ss_pred hhHHHHHHHhCCeEeecccCccccCCCCCCceeeeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHH
Q 008279 348 QYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYERE 424 (571)
Q Consensus 348 ~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~ 424 (571)
.+|+|||++|||++++ +++++++++||+|+.|+. ++++++++.+|++
T Consensus 309 ~~l~~ia~~tGa~ii~-----~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------- 358 (519)
T TIGR02341 309 EGIERLALVTGGEIVS-----TFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKL------------------------- 358 (519)
T ss_pred HHHHHHHHHhCCEEec-----ccccCCccccccCceEEEEEECCEEEEEEEcCCC-------------------------
Confidence 6899999999999999 588888899999999874 4678999988764
Q ss_pred HHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHH
Q 008279 425 KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGA 503 (571)
Q Consensus 425 ~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~ 503 (571)
+++|||+|||+|+.+++|+||+++||++++|++++++ +||||||+|++++.+|++++++..++++ +++
T Consensus 359 ----------~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i 427 (519)
T TIGR02341 359 ----------GEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEA-LAV 427 (519)
T ss_pred ----------CCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHH-HHH
Confidence 3589999999999999999999999999999999996 9999999999999999998877777766 899
Q ss_pred HHHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCceeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 504 DIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 504 ~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~---~~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
++|++||+.||++||+|||+|+.+++.+|++. ++.++|||+.+|++.||++.|||||+.|| ++|+.|+
T Consensus 428 ~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~ 499 (519)
T TIGR02341 428 EAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAA 499 (519)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhhccceEcHHHHHHHHHHHH
Confidence 99999999999999999999999999999864 34579999999999999999999999999 9999884
No 32
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.5e-83 Score=700.36 Aligned_cols=422 Identities=23% Similarity=0.305 Sum_probs=380.9
Q ss_pred cHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCc
Q 008279 71 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDG 150 (571)
Q Consensus 71 ~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDG 150 (571)
.++++..++.+|..|+++|++||||+||+|||++++|+++|||||+||+++|+++||+ ++|++++|++|++++|||
T Consensus 6 ~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~~~~~~GDG 81 (472)
T cd03341 6 LEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPA----AKLLVMASQMQEEEIGDG 81 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHH----HHHHHHHHHHHhhhhCCC
Confidence 3778999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccc-cCc---h-HHHHHHHhhc-----CCchHHH
Q 008279 151 TTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE-VED---S-ELADVAAVSA-----GNNYEVG 220 (571)
Q Consensus 151 TTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~-v~~---~-~L~~va~ts~-----~~~~~ls 220 (571)
|||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|++++++ +++ . .+.+++++++ +++++|+
T Consensus 82 TTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~ 161 (472)
T cd03341 82 TNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLS 161 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999876 543 2 6778888764 3478999
Q ss_pred HHHHHHHHhhccC--Cc-------eEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCCCH
Q 008279 221 NMIAEAMSKVGRK--GV-------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNA 291 (571)
Q Consensus 221 ~li~~Av~~v~~~--g~-------I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~~~ 291 (571)
+++++|+.+++++ |. |...+|++++|+ ++++|++|++.+. .++++++||+|++++++++.
T Consensus 162 ~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds-~lv~Giv~~~~~~---------~~~~~~~n~~Ili~~~~Le~- 230 (472)
T cd03341 162 PLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDS-KVVRGMVFKREPE---------GSVKRVKKAKVAVFSCPFDI- 230 (472)
T ss_pred HHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccc-eEEeeEEEccccC---------CCceeccCCcEEEEeccccC-
Confidence 9999999999875 43 233589999999 9999999986532 24478999999999999887
Q ss_pred HHHHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecccCcccc
Q 008279 292 RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALD 371 (571)
Q Consensus 292 ~~l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~~~ 371 (571)
|+||||++++|+++++++|..+ +|+||++|+ +.+|+|||++|||++++ +++
T Consensus 231 -------------g~~lvi~~~~I~d~al~~l~~~------~I~av~~~~-----~~~Le~Ia~~tGa~ii~-----~~~ 281 (472)
T cd03341 231 -------------GVNVIVAGGSVGDLALHYCNKY------GIMVIKINS-----KFELRRLCRTVGATPLP-----RLG 281 (472)
T ss_pred -------------CCeEEEECCCCCHHHHHHHHHC------CeEEEEeCC-----HHHHHHHHHHhCCEEec-----ccc
Confidence 8999999999999999986653 789999776 67899999999999998 478
Q ss_pred CCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCeEEEEEccCCHH
Q 008279 372 KVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 448 (571)
Q Consensus 372 ~~~~~~lG~~~~v~i~---~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~ 448 (571)
+++++.||+|++|++. +++|++|.++++. ++++||+|||+|+.
T Consensus 282 ~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------------------~~~~TI~lrG~t~~ 327 (472)
T cd03341 282 APTPEEIGYCDSVYVEEIGDTKVVVFRQNKED----------------------------------SKIATIVLRGATQN 327 (472)
T ss_pred cCCHhHCCCceEEEEEEECCeeEEEEEccCCC----------------------------------CCeEEEEEECCCHH
Confidence 8888999999999865 4889999887531 35899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHhHHHHHHHHHcCCChHH
Q 008279 449 ELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSV 527 (571)
Q Consensus 449 ~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~ 527 (571)
+++|.||+++||++++++++++| +|||||++|++++.+|++++++..+.++ +++++|++||+.||++|++|||+|+.+
T Consensus 328 ~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~-~~~~~~a~al~~ip~~L~~NaG~d~~~ 406 (472)
T cd03341 328 ILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQ-YAIKKFAEAFEVVPRTLAENAGLDATE 406 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999999999999999 9999999999999999998777767655 899999999999999999999999999
Q ss_pred HHHHHHhc---CCCceeEEcCCC--cccchhhcCcccchhHH-HHHHhcC
Q 008279 528 VSEKVLSS---DNHKYGYNAATG--NYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 528 vi~kl~~~---~~~~~Gid~~~~--~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
++.+|+.. ++.++|||+.+| ++.||++.|||||+.|| ++|++|+
T Consensus 407 ~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~ 456 (472)
T cd03341 407 VLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLAT 456 (472)
T ss_pred HHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHH
Confidence 99999763 356799999999 99999999999999999 9999884
No 33
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=8.4e-83 Score=696.50 Aligned_cols=424 Identities=38% Similarity=0.544 Sum_probs=388.6
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcc
Q 008279 65 DLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 144 (571)
Q Consensus 65 ~i~~~~~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~ 144 (571)
...++ +++|+.+++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||. ++|+++++++||
T Consensus 2 ~~~~~--~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~----a~ll~~~~~~~~ 75 (464)
T cd00309 2 EREFG--EEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPA----AKLLVEVAKSQD 75 (464)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHH----HHHHHHHHHHHH
Confidence 35566 899999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred cccCCcccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccc--cCch-HHHHHHHhhcC------C
Q 008279 145 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE--VEDS-ELADVAAVSAG------N 215 (571)
Q Consensus 145 ~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~--v~~~-~L~~va~ts~~------~ 215 (571)
+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++++ +.+. .|.++|+|+++ +
T Consensus 76 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~ 155 (464)
T cd00309 76 DEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGG 155 (464)
T ss_pred hHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999998 4455 89999999987 7
Q ss_pred chHHHHHHHHHHHhhcc------CCceEE--ecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeeccc
Q 008279 216 NYEVGNMIAEAMSKVGR------KGVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK 287 (571)
Q Consensus 216 ~~~ls~li~~Av~~v~~------~g~I~i--~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~ 287 (571)
++.|++++++|+.++++ .+.|++ .+|+++.|+ ++++|++|+++|.+|+| +++++||+|++++++
T Consensus 156 ~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds-~li~Gi~~~~~~~~~~m-------~~~~~n~~Ili~~~~ 227 (464)
T cd00309 156 DDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDS-ELVVGMVFDKGYLSPYM-------PKRLENAKILLLDCK 227 (464)
T ss_pred hHHHHHHHHHHHHHhccccCccccceEEEEecCCCCcccc-eeeeeEEEecCCCCCCC-------ceeecCceEEEEecC
Confidence 89999999999999987 456655 589999999 89999999999999874 678999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecccC
Q 008279 288 ITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVG 367 (571)
Q Consensus 288 i~~~~~l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~ 367 (571)
|+. |||++++|+++++++|..+ +|++|++ +++++|+|||++|||++++
T Consensus 228 Le~-----------------lIi~~~~I~~~al~~L~~~------~I~~v~~-----~~~~~L~~Ia~~tGa~ii~---- 275 (464)
T cd00309 228 LEY-----------------VVIAEKGIDDEALHYLAKL------GIMAVRR-----VRKEDLERIAKATGATIVS---- 275 (464)
T ss_pred cce-----------------EEecCCCcCHHHHHHHHHC------CeEEEEe-----CCHHHHHHHHHHhCCEEec----
Confidence 887 7888888999999999874 6788874 5689999999999999998
Q ss_pred ccccCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCeEEEEEcc
Q 008279 368 LALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGA 444 (571)
Q Consensus 368 ~~~~~~~~~~lG~~~~v~i~---~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~er~~~l~g~~~tI~vrG 444 (571)
++++++++.+|+|+.|++. ++++++|.++.. +..|||+|||
T Consensus 276 -~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-----------------------------------~~~~TIllrG 319 (464)
T cd00309 276 -RLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKG-----------------------------------GKVATILLRG 319 (464)
T ss_pred -ccccCCcccCccccEEEEEEEcCeeEEEEEecCC-----------------------------------CCEEEEEEeC
Confidence 4788888999999999864 567888887643 3589999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHhHHHHHHHHHcCC
Q 008279 445 QTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGV 523 (571)
Q Consensus 445 ~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~~AL~~ip~~La~NaG~ 523 (571)
+|+.+++|+||+++||+++++++++++ +|||||++|++++++|++++.+.++.++ +++++|++||+.||++|++|||+
T Consensus 320 ~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~NaG~ 398 (464)
T cd00309 320 ATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQ-LGIEAFADALEVIPRTLAENAGL 398 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999996 9999999999999999998877666655 89999999999999999999999
Q ss_pred ChHHHHHHHHhcC---CCceeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 524 NGSVVSEKVLSSD---NHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 524 d~~~vi~kl~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
|+.+++.+|+..| ..++|+|..+|++.||++.|||||+.|| ++|+.|+
T Consensus 399 d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~ 450 (464)
T cd00309 399 DPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSAT 450 (464)
T ss_pred CHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHH
Confidence 9999999998654 3478999999999999999999999999 9999884
No 34
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-82 Score=633.95 Aligned_cols=436 Identities=21% Similarity=0.336 Sum_probs=397.3
Q ss_pred HHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcccH
Q 008279 74 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTT 153 (571)
Q Consensus 74 ~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGTTt 153 (571)
..-+++++|..+++.++|||||+||||+|++..|+.+|||||+||||.|++-||+ |+.++++|++||.|+||||||
T Consensus 21 QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPa----aktlVdia~sQDaEVGDGTTS 96 (543)
T KOG0361|consen 21 QLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPA----AKTLVDIARSQDAEVGDGTTS 96 (543)
T ss_pred hhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChh----HHHHHHHHhhccccccCCcee
Confidence 4457899999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCc--h-----HHHHHHHhhcC------CchHHH
Q 008279 154 SVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED--S-----ELADVAAVSAG------NNYEVG 220 (571)
Q Consensus 154 ~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~--~-----~L~~va~ts~~------~~~~ls 220 (571)
||+|++|+|+++..+++.|+||..|+++|++|...+++.|+++++.++. + .|++.|.|+++ .+++|+
T Consensus 97 Vv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~ 176 (543)
T KOG0361|consen 97 VVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFA 176 (543)
T ss_pred EeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999988872 1 57888888754 468999
Q ss_pred HHHHHHHHhhccC---Cc--eEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeeccc--------
Q 008279 221 NMIAEAMSKVGRK---GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK-------- 287 (571)
Q Consensus 221 ~li~~Av~~v~~~---g~--I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~-------- 287 (571)
+|++||+..+..+ .. |++.+||+++|| .+++|+.|.+.|....| +.+|+++.||||++++..
T Consensus 177 ~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS-~lv~GVAFkKtFsYAGf----EqqPKk~~NpkIl~LnvELElKaEkd 251 (543)
T KOG0361|consen 177 KMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDS-LLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNVELELKAEKD 251 (543)
T ss_pred HHHHHHHHhhccccchhhcceeecCCCccchh-hhccceeeeehccccch----hhCccccCCceEEEEeeeeeeccccc
Confidence 9999999998743 12 667899999999 69999999999987776 567789999999999864
Q ss_pred -----CCCHHHH-----------HHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHH
Q 008279 288 -----ITNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLD 351 (571)
Q Consensus 288 -----i~~~~~l-----------~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~ 351 (571)
+.+++++ .+.|+++..+|.++|+..-.|.|.|.++|+.+.+ .+.|++..++|.
T Consensus 252 NAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdi-----------FCAGRV~~eDl~ 320 (543)
T KOG0361|consen 252 NAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDI-----------FCAGRVPEEDLN 320 (543)
T ss_pred CceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCc-----------eecCcCCHHHHH
Confidence 3455544 3468899999999999999999999999998754 356799999999
Q ss_pred HHHHHhCCeEeecccCccccCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 008279 352 DIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNE 428 (571)
Q Consensus 352 ~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~e 428 (571)
|+..+|||++.+ +..++.++.||.|+.++ ++++.|-+|+||+..
T Consensus 321 Rv~~acGGsi~t-----t~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~a---------------------------- 367 (543)
T KOG0361|consen 321 RVMQACGGSIQT-----TVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKA---------------------------- 367 (543)
T ss_pred HHHHhcCcchhh-----hhhhcchhhcchhhhHHHHhhcchhhhhhcCCCcc----------------------------
Confidence 999999999998 47788899999999997 578999999999863
Q ss_pred HHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHH
Q 008279 429 RIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVK 507 (571)
Q Consensus 429 r~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~ 507 (571)
..||+++||+-++.++|.+|++|||++++|.|+++. +|+|||++||++|++|++++.++.++.| +.+.+|+
T Consensus 368 -------ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q-~~i~A~a 439 (543)
T KOG0361|consen 368 -------KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQ-LFINAYA 439 (543)
T ss_pred -------ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHH-HHHHHHH
Confidence 489999999999999999999999999999999998 9999999999999999999999999876 7889999
Q ss_pred HHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCceeEEcCCCcccchhhcCcccchhHH-HHHHhc
Q 008279 508 RALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIA 570 (571)
Q Consensus 508 ~AL~~ip~~La~NaG~d~~~vi~kl~~~---~~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A 570 (571)
+|||.||++||+|+|+|...++++|+.. +..|+|+|..++.+.|+++.+||||..|| ++|..|
T Consensus 440 kalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aa 506 (543)
T KOG0361|consen 440 KALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAA 506 (543)
T ss_pred HHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccchhhHHHhhccChHHHHHHHHHHH
Confidence 9999999999999999999999999864 46899999999999999999999999999 999876
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=4.7e-76 Score=646.64 Aligned_cols=423 Identities=30% Similarity=0.484 Sum_probs=380.8
Q ss_pred HHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcccHHHHHHHHHHHH
Q 008279 85 LADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAE 164 (571)
Q Consensus 85 la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGTTt~vvLa~~Ll~~ 164 (571)
|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+ ++|+++++++|++++||||||+|+|+++||++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~----~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~ 76 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPI----AKLLVEASKSQDEEVGDGTTSVVLLACELLRN 76 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHH----HHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccch----hhhHHHhHHHHHhhhccccceeeecccchhhh
Confidence 68999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCch--HHHHHHHhhcCCc------hHHHHHHHHHHHhhccC---
Q 008279 165 GVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS--ELADVAAVSAGNN------YEVGNMIAEAMSKVGRK--- 233 (571)
Q Consensus 165 ~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~--~L~~va~ts~~~~------~~ls~li~~Av~~v~~~--- 233 (571)
+.+++++|+||..|++||+.+.+.+++.|+++++++++. .|.++|+++++++ +.|++++++|+..+..+
T Consensus 77 ~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~ 156 (485)
T PF00118_consen 77 ALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDL 156 (485)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHG
T ss_pred hhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccc
Confidence 999999999999999999999999999999999988764 8999999998876 89999999999433211
Q ss_pred Cc--eEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCCCHHH------------------
Q 008279 234 GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARD------------------ 293 (571)
Q Consensus 234 g~--I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~~~~~------------------ 293 (571)
+. +....|++.+|| ++++|++|+++|.++ +|++++++|+|++++++++..+.
T Consensus 157 ~~i~i~~i~g~~~~dS-~li~Giv~~~~~~~~-------~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 228 (485)
T PF00118_consen 157 DNIKIIKIPGGSISDS-ELINGIVLDKGFSSP-------NMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSK 228 (485)
T ss_dssp GGEEEEEEESSSSGGE-EEESEEEESSSBSST-------TSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHH
T ss_pred cchhhhhhcccccccc-ccccceeeecccccc-------ccccccccceEEeeecccccccccccccchhhHHHHHHHHh
Confidence 11 233588888998 899999999999886 46778899999999998876655
Q ss_pred -----HHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecccCc
Q 008279 294 -----LINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGL 368 (571)
Q Consensus 294 -----l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~ 368 (571)
+.++++++.+.|++|||++++|++.++++|..+++ .++ .++++.+|++|+++||+++++
T Consensus 229 ~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I------~~i-----~~v~~~~l~~i~~~tg~~ii~----- 292 (485)
T PF00118_consen 229 QEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGI------LVI-----RRVSKEDLERIARATGASIIS----- 292 (485)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTH------EEE-----SSEHHHHHHHHHHHHTSBEBS-----
T ss_pred hhhhhhccccceEeeeccceeeeecccccccchhhhhhhh------hcc-----ccchHHHHHhhhcccCCcEec-----
Confidence 78899999999999999999999999999998854 443 467899999999999999998
Q ss_pred cccCCCCCCceeeeEE---EEecceEEEEcC--CCChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCeEEEEEc
Q 008279 369 ALDKVGKEVLGNASKV---VLTKDTTTIVGD--GSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVG 443 (571)
Q Consensus 369 ~~~~~~~~~lG~~~~v---~i~~~~~~~i~~--~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~er~~~l~g~~~tI~vr 443 (571)
++++++++.+|+|+.+ ++++++|+++++ +. .+..+||+||
T Consensus 293 ~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~~~Till~ 337 (485)
T PF00118_consen 293 SLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCL-----------------------------------SSKICTILLR 337 (485)
T ss_dssp SCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSES-----------------------------------SSSEEEEEEE
T ss_pred ccccccchhhhhhhhhhhccccccccccccccccc-----------------------------------ccCceEEEec
Confidence 4678888889999999 567889999983 32 3568999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHhHHHHHHHHHcC
Q 008279 444 AQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAG 522 (571)
Q Consensus 444 G~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~~AL~~ip~~La~NaG 522 (571)
|+|+.+++|++++++||+++++++++++ +|||||++|++++++|++++.+.++.++ +++++|++||+.||++|++|||
T Consensus 338 g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~NaG 416 (485)
T PF00118_consen 338 GPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQ-LAIEAFADALESIPKTLAQNAG 416 (485)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHH-HHHHHHHHHTTHHHHHHHHHTT
T ss_pred cccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchh-hhHHHHHHHHHHhhhhhhhccC
Confidence 9999999999999999999999999987 9999999999999999998887766654 8999999999999999999999
Q ss_pred CChHHHHHHHHh--cCCCceeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 523 VNGSVVSEKVLS--SDNHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 523 ~d~~~vi~kl~~--~~~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
+|+.+++++|+. +.+.++|||+.+|++.||++.|||||+.+| ++|+.|+
T Consensus 417 ~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~ 468 (485)
T PF00118_consen 417 LDSSEVISKLKSFHNNGNNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAV 468 (485)
T ss_dssp STHHHHHHHHHHHHHSTTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHH
T ss_pred CCceeeehhhHhhhccccccCcCccCCceeccccccchhhHHHHHHHHHHHH
Confidence 999999999987 345699999999999999999999999999 9999874
No 36
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-76 Score=591.94 Aligned_cols=441 Identities=23% Similarity=0.347 Sum_probs=392.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcc
Q 008279 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (571)
Q Consensus 72 ~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGT 151 (571)
++.|.+++.+.+.+++.++|||||+||||||....|+++|||||+||||.|.+-||+ |+||++++..||.++||||
T Consensus 25 ~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~----akmLvelS~aQD~eaGDGT 100 (534)
T KOG0358|consen 25 EQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPA----AKMLVELSAAQDSEAGDGT 100 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChH----HHHHHHhhhhccccccCCc
Confidence 779999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccC--ch-HHHHHHHhhcCC------chHHHHH
Q 008279 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE--DS-ELADVAAVSAGN------NYEVGNM 222 (571)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~-~L~~va~ts~~~------~~~ls~l 222 (571)
||||+|+|+||..+.+|+++|+||..|...|+.|.+..+++|.+++.|++ |. .|.+-|+||+++ ...+++|
T Consensus 101 TsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapm 180 (534)
T KOG0358|consen 101 TSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPM 180 (534)
T ss_pred eEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchH
Confidence 99999999999999999999999999999999999999999999998876 44 688889998764 5789999
Q ss_pred HHHHHHhhccCC--------ceEE--ecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccC----
Q 008279 223 IAEAMSKVGRKG--------VVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI---- 288 (571)
Q Consensus 223 i~~Av~~v~~~g--------~I~i--~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i---- 288 (571)
.++|+.++-... .|++ +.||.++|+ ++++|++|++..... ..|.+++++||-++.+.|
T Consensus 181 AVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDt-e~i~glvl~~~~~~~-------~gptriekAkIglIQF~iS~PK 252 (534)
T KOG0358|consen 181 AVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDT-ELIKGLVLTQKASKS-------AGPTRIEKAKIGLIQFQISPPK 252 (534)
T ss_pred HHHHHHhccCcccccccchhhhhhHHhhCCccchh-hhhcceEEeeecccC-------CCcchhhhceeeEEEEEecCCC
Confidence 999999985421 2333 699999999 999999999764431 134567888888777643
Q ss_pred ---------CCHH-----------HHHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchh
Q 008279 289 ---------TNAR-----------DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQ 348 (571)
Q Consensus 289 ---------~~~~-----------~l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~ 348 (571)
++.. .++++++++++.|+|++++|++|=.++++-|..|.+. .++|++|| ++.++
T Consensus 253 tdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~-klkimvik-----dieRe 326 (534)
T KOG0358|consen 253 TDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLA-KLKIMVIK-----DIERE 326 (534)
T ss_pred CCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHH-hCcEEEEc-----cccHh
Confidence 2222 2577899999999999999999988888877777663 56899998 67789
Q ss_pred hHHHHHHHhCCeEeecccCccccCCCCCCceeeeEEEEe----cceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHH
Q 008279 349 YLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT----KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYERE 424 (571)
Q Consensus 349 ~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~i~----~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~ 424 (571)
++|.+|+.+|.+++. +++.++++.||+++.++.. +.+++-+.|+.++
T Consensus 327 diefick~l~c~Pia-----~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~------------------------ 377 (534)
T KOG0358|consen 327 DIEFICKTLGCKPIA-----DIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNA------------------------ 377 (534)
T ss_pred hHHHHHhhcCCeecc-----hhhhcChhhcCcchhhhhcccCCCccEEEEEEeecC------------------------
Confidence 999999999999999 5899999999999998743 4477778776442
Q ss_pred HHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHH
Q 008279 425 KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGA 503 (571)
Q Consensus 425 ~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~ 503 (571)
|..++|++||.+...++|.+|++|||||++|+.++.. ++||||+.||+++..|.+++.+..+.+. +.+
T Consensus 378 ----------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~-yc~ 446 (534)
T KOG0358|consen 378 ----------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEA-YCW 446 (534)
T ss_pred ----------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchh-HHH
Confidence 5689999999999999999999999999999999997 9999999999999999999999988877 799
Q ss_pred HHHHHHHhHHHHHHHHHcCCChHHHHHHHHhc---CCCceeEEcCCCcccchhhcCcccchhHH-HHHHhc
Q 008279 504 DIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIA 570 (571)
Q Consensus 504 ~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~---~~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A 570 (571)
++|++|||.||.+||+|||++|..++++|++. ++.++|+|++.|.+.||++..|+.|+.|- ++++.|
T Consensus 447 rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA 517 (534)
T KOG0358|consen 447 RAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLVSISAITLA 517 (534)
T ss_pred HHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceeeeHHHHHHH
Confidence 99999999999999999999999999999875 45789999999999999999999999999 999876
No 37
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-75 Score=579.54 Aligned_cols=434 Identities=23% Similarity=0.367 Sum_probs=387.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceeeecC--CCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCC
Q 008279 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESK--YGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGD 149 (571)
Q Consensus 72 ~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~--~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GD 149 (571)
+.+|...+.|...+.|+|+|||||+||+||+... .|.+.+||||+||||++.+++|+ ||+|++.++-||+|+||
T Consensus 17 e~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpa----AkvLv~~S~vQD~EvGD 92 (527)
T KOG0363|consen 17 ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPA----AKVLVDISKVQDDEVGD 92 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCch----hhheeccccccccccCC
Confidence 7899999999999999999999999999999853 56799999999999999999999 99999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCch------HHHHHHHhhcC------Cch
Q 008279 150 GTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS------ELADVAAVSAG------NNY 217 (571)
Q Consensus 150 GTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~------~L~~va~ts~~------~~~ 217 (571)
|||||+||+++||+|+.+|+.+.+||+.|+.||+.|...+++.|.+.+++-.++ +|.++|+|++. .++
T Consensus 93 GTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~ke 172 (527)
T KOG0363|consen 93 GTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKE 172 (527)
T ss_pred CceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999999988765421 89999998754 368
Q ss_pred HHHHHHHHHHHhhccCC-----ceEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccC----
Q 008279 218 EVGNMIAEAMSKVGRKG-----VVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKI---- 288 (571)
Q Consensus 218 ~ls~li~~Av~~v~~~g-----~I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i---- 288 (571)
+|++|+++|+.++...+ .|.+..||+++|| .+-+|+.+++.+-. +.|++++||+||+-+.++
T Consensus 173 hFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dS-fLDeGFlL~K~igv--------~qpkriena~iLIANT~mDtDK 243 (527)
T KOG0363|consen 173 HFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDS-FLDEGFLLDKKIGV--------NQPKRIENAKILIANTPMDTDK 243 (527)
T ss_pred HHHHHHHHHHHHhcCCCCccceeeehhcCCccccc-cccccceeccccCC--------CCcccccccceEEecCCCcccc
Confidence 99999999999985543 2455799999999 79999999986432 356789999999987652
Q ss_pred ----------CCH-----------HHHHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcch
Q 008279 289 ----------TNA-----------RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKS 347 (571)
Q Consensus 289 ----------~~~-----------~~l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~ 347 (571)
++. +.+...++++.+.|+|+.|-..-|.++..++|... +|++|....|
T Consensus 244 vKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~da------gi~aIEHADF----- 312 (527)
T KOG0363|consen 244 VKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADA------GIMAIEHADF----- 312 (527)
T ss_pred eeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhc------Ccceeecccc-----
Confidence 221 13566789999999999999999999888888764 5677765554
Q ss_pred hhHHHHHHHhCCeEeecccCccccCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHH
Q 008279 348 QYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYERE 424 (571)
Q Consensus 348 ~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~ 424 (571)
+-+||++.+|||.+++ +|++++...||+|+.++ ++++.++.|.|+.-
T Consensus 313 dGiERLalvtGGeI~S-----TFd~p~~~klG~C~~IeeimiGed~li~FSGv~~------------------------- 362 (527)
T KOG0363|consen 313 DGIERLALVTGGEIVS-----TFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKL------------------------- 362 (527)
T ss_pred hhHHHHhhcccceeee-----ccCCcchhccccchhhHHHhcCccceeeeccccc-------------------------
Confidence 5689999999999999 69999999999999986 68999999999742
Q ss_pred HHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHH
Q 008279 425 KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGA 503 (571)
Q Consensus 425 ~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~ 503 (571)
|..|||++||+|++.+||.+|++|||||++-..+++. +|.||||+||-++..+.+++...++++. .++
T Consensus 363 ----------GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea-~Ai 431 (527)
T KOG0363|consen 363 ----------GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEA-LAI 431 (527)
T ss_pred ----------ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhh-HHH
Confidence 5589999999999999999999999999999999998 9999999999999999999999999876 899
Q ss_pred HHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcC---CCceeEEcCCCcccchhhcCcccchhHH-HHHHhc
Q 008279 504 DIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD---NHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIA 570 (571)
Q Consensus 504 ~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A 570 (571)
++|++||.++|.+||.|+|+|+.+++++|++.| ...+|+|+.+|++.||.+.||+|.++|| +.+.+|
T Consensus 432 eAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sa 502 (527)
T KOG0363|consen 432 EAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLKVKQAVVSSA 502 (527)
T ss_pred HHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCchhhHHHhhhHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999764 5789999999999999999999999999 888765
No 38
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-69 Score=549.95 Aligned_cols=440 Identities=23% Similarity=0.318 Sum_probs=389.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcc
Q 008279 72 GYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGT 151 (571)
Q Consensus 72 ~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGT 151 (571)
+.+|..+..++..++++|++||||-|+|||+++.+|++.+||||+|||+.+.++||+ +|+|++.++.||+++||||
T Consensus 18 ~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa----~KiLvelaq~qd~evgDgt 93 (545)
T KOG0360|consen 18 ERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPA----AKVLVELAQLQDEEVGDGT 93 (545)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchH----HHHHHHHHHhccccccCCc
Confidence 778889999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh-cccccCch---HHHHHHHhhcCC------chHHHH
Q 008279 152 TTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQ-MSKEVEDS---ELADVAAVSAGN------NYEVGN 221 (571)
Q Consensus 152 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~-~s~~v~~~---~L~~va~ts~~~------~~~ls~ 221 (571)
|++++++++||+++.+|+..++||..|+.||+.|+..+++++.+ +++|++.. -|.++++|+++. .++|++
T Consensus 94 tsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~ 173 (545)
T KOG0360|consen 94 TSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTE 173 (545)
T ss_pred eEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHHH
Confidence 99999999999999999999999999999999999999999976 57787754 789999988643 589999
Q ss_pred HHHHHHHhhcc---CC---------ceEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeeccc--
Q 008279 222 MIAEAMSKVGR---KG---------VVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK-- 287 (571)
Q Consensus 222 li~~Av~~v~~---~g---------~I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~-- 287 (571)
++++|+..+.- +| +|-+-+|++..|| .+++|+.++....+ ..|+..+.|+||+++|+.
T Consensus 174 ~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS-~l~~GyaLnc~~as-------q~m~~~i~~~Kiacld~~Lq 245 (545)
T KOG0360|consen 174 MVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIES-MLLPGYALNCSVAS-------QMMPLRIKNAKIACLDFTLQ 245 (545)
T ss_pred HHHHHHHHHhhcccCCceeccccceeEEecCCccchhh-eeecceeeeccHhh-------hccccccccceeeeEecccc
Confidence 99999998742 22 2334699999999 69999999987655 347888999999999985
Q ss_pred -----------CCCHHHHHH-----------HHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCc
Q 008279 288 -----------ITNARDLIN-----------VLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (571)
Q Consensus 288 -----------i~~~~~l~~-----------~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~ 345 (571)
+.+++++.+ -++++...|+|+|+++++|||.++.+|+.+ +++||| +.
T Consensus 246 k~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~vea------gamAVr-----R~ 314 (545)
T KOG0360|consen 246 KTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEA------GAMAVR-----RC 314 (545)
T ss_pred cccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHc------chhhhH-----HH
Confidence 456654432 356889999999999999999999999987 456665 77
Q ss_pred chhhHHHHHHHhCCeEeecccCccc-cCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHH
Q 008279 346 KSQYLDDIAILTGGTVIRDEVGLAL-DKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDY 421 (571)
Q Consensus 346 ~~~~L~~ia~~tGa~ii~~~~~~~~-~~~~~~~lG~~~~v~---i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~ 421 (571)
++.+|++|+++||++++++..++.- +.+++..+|+|+.|. +++|+++.+.+...
T Consensus 315 ~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka---------------------- 372 (545)
T KOG0360|consen 315 KKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA---------------------- 372 (545)
T ss_pred HHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCcc----------------------
Confidence 8999999999999999997544432 356788999999985 67888888877432
Q ss_pred HHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhH
Q 008279 422 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEK 500 (571)
Q Consensus 422 e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~ 500 (571)
..|+|++||++++.+||++|++|||+|++|..++++ +||||||+|.+++-+|+.++.+..++||
T Consensus 373 --------------~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~- 437 (545)
T KOG0360|consen 373 --------------TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQ- 437 (545)
T ss_pred --------------ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHH-
Confidence 378999999999999999999999999999999999 9999999999999999999988888887
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCChHHHHHHHHhcC-----------CCceeEEcCCCcccchhhcCcccchhHH-HHHH
Q 008279 501 VGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD-----------NHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIA 568 (571)
Q Consensus 501 ~~~~~~~~AL~~ip~~La~NaG~d~~~vi~kl~~~~-----------~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~ 568 (571)
+++.-|++||.++|++|+-|++.|+.++++++++.| ..++|+|..+|++.|.++.|+++|..+| .+|+
T Consensus 438 laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk 517 (545)
T KOG0360|consen 438 LAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLK 517 (545)
T ss_pred HHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEeecceeeeeeccceeehhhhH
Confidence 688899999999999999999999999999998632 2489999999999999999999999999 9998
Q ss_pred hcC
Q 008279 569 IAL 571 (571)
Q Consensus 569 ~A~ 571 (571)
.|.
T Consensus 518 ~at 520 (545)
T KOG0360|consen 518 FAT 520 (545)
T ss_pred HHH
Confidence 773
No 39
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-66 Score=535.70 Aligned_cols=437 Identities=24% Similarity=0.317 Sum_probs=378.7
Q ss_pred CcHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCC
Q 008279 70 KDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGD 149 (571)
Q Consensus 70 ~~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GD 149 (571)
..+++...++.+|+.++++++|+|||+||+|||+|+.|+.++|||.+||+++++++||+ ||||++++++|+++.||
T Consensus 23 ~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPa----akllv~a~~~q~~~iGD 98 (537)
T KOG0362|consen 23 GEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPA----AKLLVEATQMQEEEIGD 98 (537)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcH----HHHHHHHHHHHHHhhCC
Confidence 34788889999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccc-cCch-HHHHHHHhh-----cCCchHHHHH
Q 008279 150 GTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKE-VEDS-ELADVAAVS-----AGNNYEVGNM 222 (571)
Q Consensus 150 GTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~-v~~~-~L~~va~ts-----~~~~~~ls~l 222 (571)
||+++|+|+++||+++.++|..|++|.+|++||+.|.+.+++.|+++... +.+. +...+++++ ..++++++++
T Consensus 99 gtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~l 178 (537)
T KOG0362|consen 99 GTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKL 178 (537)
T ss_pred CceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999988532 2221 122333332 3458999999
Q ss_pred HHHHHHhhccCC-----ce--EEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeeccc--------
Q 008279 223 IAEAMSKVGRKG-----VV--TLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK-------- 287 (571)
Q Consensus 223 i~~Av~~v~~~g-----~I--~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~-------- 287 (571)
+++|+..+.+.+ .| .+..|++++|| .++.||+|.+... +....-+.++|.++.||
T Consensus 179 Va~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S-~Vv~GmVfkr~~e---------G~v~~ak~arvAvf~cP~d~~~TEt 248 (537)
T KOG0362|consen 179 VAKACVSILPLMSFNVDNIRVCKILGGGLEDS-CVVCGMVFKRDPE---------GEVKSAKDARVAVFACPFDIAQTET 248 (537)
T ss_pred HHHHHHhhcccccccccceEEEEEecCCcccc-eeeEEEEeccccC---------CcccccccceeEEEecCCCcccccC
Confidence 999999998763 23 33699999999 8999999998732 33345567889999887
Q ss_pred -----CCCHHHHHH-----------HHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHH
Q 008279 288 -----ITNARDLIN-----------VLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLD 351 (571)
Q Consensus 288 -----i~~~~~l~~-----------~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~ 351 (571)
|++++++.+ .++.+...|+++|++.+.+++.+|+++ |+ ++|+++++++ +.+|.
T Consensus 249 kgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhfl--nk----y~ImVlqi~S-----k~eLr 317 (537)
T KOG0362|consen 249 KGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFL--NK----YKIMVLQINS-----KFDLR 317 (537)
T ss_pred cceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhh--cc----ccEEEEEecc-----HhhHH
Confidence 667766543 467888899999999999999887754 44 4899999887 68899
Q ss_pred HHHHHhCCeEeecccCccccCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 008279 352 DIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNE 428 (571)
Q Consensus 352 ~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~e 428 (571)
|+|+..||++.. ++..+.+..+|+|.+|. ++++.++.|.....
T Consensus 318 rlcrtvGA~~l~-----rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~----------------------------- 363 (537)
T KOG0362|consen 318 RLCRTVGATALP-----RLFPPAPEELGYCDSVSTQEIGDTLVVVFRWEST----------------------------- 363 (537)
T ss_pred HHHHHcCCccch-----hccCCCCccccccceeeeeecCCceEEEEeeccC-----------------------------
Confidence 999999999998 58888999999999986 45666666653211
Q ss_pred HHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHH
Q 008279 429 RIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVK 507 (571)
Q Consensus 429 r~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~ 507 (571)
.+.++|++|||+|+..+|+.||.++|++++.+..++++ ++||+|++|++|++.|.++..++++.+| ++++.|+
T Consensus 364 -----~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q-~Aik~fa 437 (537)
T KOG0362|consen 364 -----GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQ-LAIKKFA 437 (537)
T ss_pred -----CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcch-hHHHHHH
Confidence 13589999999999999999999999999999999998 9999999999999999999999999988 7999999
Q ss_pred HHHhHHHHHHHHHcCCChHHHHHHHHhcCC--CceeEEcCCC-cccchhhcCcccchhHH-HHHHhcC
Q 008279 508 RALCYPLKLIAKNAGVNGSVVSEKVLSSDN--HKYGYNAATG-NYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 508 ~AL~~ip~~La~NaG~d~~~vi~kl~~~~~--~~~Gid~~~~-~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
+||+.+|++|++|+|++..+++++|+.-|. .+.|+|+..+ ...|+.++||||-+.+| |+|+.|.
T Consensus 438 ~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at 505 (537)
T KOG0362|consen 438 EALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLAT 505 (537)
T ss_pred HHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987653 4678887665 58999999999999999 9999873
No 40
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-66 Score=529.15 Aligned_cols=431 Identities=20% Similarity=0.287 Sum_probs=386.8
Q ss_pred HHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcccHHHH
Q 008279 77 KLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVV 156 (571)
Q Consensus 77 ~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGTTt~vv 156 (571)
.++++.++++|+++|+|||+.|.||+.++.|.+..||||..|+++|++.||+ |+-+.+++.+||+|+|||||||++
T Consensus 23 ~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpa----aksmiel~rtqdeevgdgttsvi~ 98 (527)
T KOG0364|consen 23 GNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGTTSVII 98 (527)
T ss_pred cchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcc----hhhHhhhhhcccccccCCceeeee
Confidence 4577899999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCch---HHHHHHHhhc------CCchHHHHHHHHHH
Q 008279 157 LAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS---ELADVAAVSA------GNNYEVGNMIAEAM 227 (571)
Q Consensus 157 La~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~---~L~~va~ts~------~~~~~ls~li~~Av 227 (571)
|++|+|.++..++++|+||+.|++.|.+|++.++..+++.++|++.+ .+..+...+. .+.+.++++..+|+
T Consensus 99 lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~av 178 (527)
T KOG0364|consen 99 LAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAV 178 (527)
T ss_pred ehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHH
Confidence 99999999999999999999999999999999999999988887643 6777777653 35678899999999
Q ss_pred HhhccC-Cc---------eEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCC--------
Q 008279 228 SKVGRK-GV---------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT-------- 289 (571)
Q Consensus 228 ~~v~~~-g~---------I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~-------- 289 (571)
++|+.+ |. +.+.+|+.++|| ++++|+.+.+...||. |...++||+|+++|+++.
T Consensus 179 k~V~~~~g~e~dik~y~kveKvpgg~l~~s-~vl~Gv~~nkdv~Hpk-------mrr~IenprivLlD~~LeykkGeSqt 250 (527)
T KOG0364|consen 179 KTVGVENGREIDIKRYAKVEKVPGGLLEDS-CVLKGVMINKDVTHPK-------MRRAIENPRIVLLDCPLEYKKGESQT 250 (527)
T ss_pred HHhhhccCceechhhhccccccCccccccc-ceecceeeccccCcHH-------HHHHhhcCcEEEecCCccCCCCcccc
Confidence 999875 22 233699999999 8999999999998884 667899999999999752
Q ss_pred ----------------CHHHHHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHH
Q 008279 290 ----------------NARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDI 353 (571)
Q Consensus 290 ----------------~~~~l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~i 353 (571)
+.+++..+++.+.....+|||+.+++++.+.++|.++++ .+++++|+.+-.|+
T Consensus 251 nve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~i-----------T~~rr~rKtDn~ri 319 (527)
T KOG0364|consen 251 NVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANI-----------TAIRRLRKTDNNRI 319 (527)
T ss_pred ceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCc-----------hhhhhhhccccchh
Confidence 112345678888889999999999999999999998865 35668999999999
Q ss_pred HHHhCCeEeecccCccccCCCCCCcee-eeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 008279 354 AILTGGTVIRDEVGLALDKVGKEVLGN-ASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNER 429 (571)
Q Consensus 354 a~~tGa~ii~~~~~~~~~~~~~~~lG~-~~~v~i---~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~er 429 (571)
+++||+++++ +++++.+.+.|+ |+.+++ +++.|+||.+|.+|+
T Consensus 320 a~acga~iv~-----rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pk---------------------------- 366 (527)
T KOG0364|consen 320 ARACGARIVN-----RPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPK---------------------------- 366 (527)
T ss_pred hhhcCceecc-----ChhhCchhccCcccceeeeeccCchhhhhhhhcCCCc----------------------------
Confidence 9999999998 699999999996 888875 578999999998874
Q ss_pred HHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 008279 430 IAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKR 508 (571)
Q Consensus 430 ~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~~ 508 (571)
.|||++||+|..+++|.+|.+.||+.+.|+.+-++ ++||||++||.+|+.|.+.+....+-++ -.+.+++.
T Consensus 367 -------aCtillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVek-wPY~Ava~ 438 (527)
T KOG0364|consen 367 -------ACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEK-WPYGAVAG 438 (527)
T ss_pred -------ceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhc-cchhhhhc
Confidence 79999999999999999999999999999999999 9999999999999999987776667665 68999999
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHhcC---CCceeEEcCCCcccchhhcCcccchhHH-HHHHhcC
Q 008279 509 ALCYPLKLIAKNAGVNGSVVSEKVLSSD---NHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIAL 571 (571)
Q Consensus 509 AL~~ip~~La~NaG~d~~~vi~kl~~~~---~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A~ 571 (571)
||+.+|++|++|+|.++...++.++..| ...+|+|..+|.++||.+.|+|+|..+| ++.++|+
T Consensus 439 AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktav 505 (527)
T KOG0364|consen 439 ALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAV 505 (527)
T ss_pred CceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhhhhhhhhHHH
Confidence 9999999999999999999999988653 3578999999999999999999999999 9998874
No 41
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-62 Score=494.64 Aligned_cols=433 Identities=23% Similarity=0.354 Sum_probs=378.6
Q ss_pred HHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHHhcccccCCcccH
Q 008279 74 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTT 153 (571)
Q Consensus 74 ~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q~~~~GDGTTt 153 (571)
+...++.+..-+.+++++.+||+|..||++++.|++++|+||.+.+++|+++||. +-++..++..|++..||||||
T Consensus 18 al~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPT----a~lIakaatAqdd~tGDGttS 93 (520)
T KOG0359|consen 18 ALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPT----ASLIAKVATAQDDITGDGTTS 93 (520)
T ss_pred ceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCch----HHHHHHHHHHhhcccCCCcce
Confidence 4455677888899999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHhhcCC------chHHHHHHHHHH
Q 008279 154 SVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGN------NYEVGNMIAEAM 227 (571)
Q Consensus 154 ~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~L~~va~ts~~~------~~~ls~li~~Av 227 (571)
+|+|.++|++++..++..|+||..|+.||+.|.+.++++|++.+++++...|..|++++++. -+.+++++++|+
T Consensus 94 ~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aV 173 (520)
T KOG0359|consen 94 VVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKVHAELADVLTPIVVDSV 173 (520)
T ss_pred EEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhh
Confidence 99999999999999999999999999999999999999999888887766899999999875 377899999999
Q ss_pred Hhhcc-CCceEE-------ecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCC----------
Q 008279 228 SKVGR-KGVVTL-------EEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT---------- 289 (571)
Q Consensus 228 ~~v~~-~g~I~i-------~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~---------- 289 (571)
..+.+ ++.|.+ -+-++..|+ .+++|+++|+|-.||. ||+.++|+.||+++..+.
T Consensus 174 l~i~~~~~~idl~mveim~mq~~s~~dT-~~v~glvLdhg~rHpd-------mp~~~e~a~iL~~NvSLEYEK~Einsgf 245 (520)
T KOG0359|consen 174 LCIRRQEEPIDLFMVEIMEMQHKSLHDT-SLVQGLVLDHGARHPD-------MPRRVEDAYILICNVSLEYEKPEINSGF 245 (520)
T ss_pred eeeccCCCCcchhHHHhhhhccCchhhh-HHhhhhhccCCCCCcc-------cccchhceEEEEeeccccccccccccch
Confidence 98873 232211 244567777 7999999999999985 778899999999987542
Q ss_pred ---CHHH----------H-HHHHHHHHHcCC---CeE-EEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHH
Q 008279 290 ---NARD----------L-INVLEDAIRGAY---PIL-IIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLD 351 (571)
Q Consensus 290 ---~~~~----------l-~~~le~i~~~g~---~lv-I~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~ 351 (571)
+++| + .+-++++.+.+. .+| |.+++|||..|+.|..+ +|+|+| +-++..||
T Consensus 246 fYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~------gIlaLR-----RAKRRNmE 314 (520)
T KOG0359|consen 246 FYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKS------GILALR-----RAKRRNME 314 (520)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhc------chHHHH-----HHhhhhHH
Confidence 2221 1 122344444442 344 66789999999999887 445554 67889999
Q ss_pred HHHHHhCCeEeecccCccccCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 008279 352 DIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNE 428 (571)
Q Consensus 352 ~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~e 428 (571)
|+..+|||..++ ++++++|++||+|+.|+ +++++|+|+++|.+|
T Consensus 315 RL~lacGG~a~n-----svddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p---------------------------- 361 (520)
T KOG0359|consen 315 RLVLACGGEAVN-----SVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNP---------------------------- 361 (520)
T ss_pred HHHHhhccceec-----ccccCChhhccccceeEEeeccceeeEeeecCCCC----------------------------
Confidence 999999999998 69999999999999996 579999999999887
Q ss_pred HHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHH
Q 008279 429 RIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVK 507 (571)
Q Consensus 429 r~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~ 507 (571)
+.|||+++|||++.+.++|+.++|++++++++++++ ++||+|++|++++.+|+...++.+++.+ +|+++|+
T Consensus 362 -------~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~-~g~~afa 433 (520)
T KOG0359|consen 362 -------SSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAY-LGVKAFA 433 (520)
T ss_pred -------cceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhh-hhHHHHH
Confidence 479999999999999999999999999999999998 9999999999999999988888888876 8999999
Q ss_pred HHHhHHHHHHHHHcCCChHHHHHHHHhcCC-CceeEEcCCCcccchhhcCcccchhHH-HHHHhc
Q 008279 508 RALCYPLKLIAKNAGVNGSVVSEKVLSSDN-HKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIA 570 (571)
Q Consensus 508 ~AL~~ip~~La~NaG~d~~~vi~kl~~~~~-~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A 570 (571)
+||..+|++|++|+|+|+.+++.+|...+. ...|+|+.+|+..|....||||.+.|+ +.|.++
T Consensus 434 ~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~~~~~~~gi~Dny~v~~~~l~s~ 498 (520)
T KOG0359|consen 434 NALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEECDPSRKGIYDNYSVKKQLLRSE 498 (520)
T ss_pred hhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCccchhhccccchHHHHHHHhhhh
Confidence 999999999999999999999999876643 356999999999999999999999999 988875
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-59 Score=460.64 Aligned_cols=354 Identities=25% Similarity=0.312 Sum_probs=323.7
Q ss_pred cccccccccccCCcHHHHHHHHHHHHHHHHhhhcccCcCCCceeeecCCCCcEEecChHHHhccccccCcccchHHHHHH
Q 008279 58 PKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVR 137 (571)
Q Consensus 58 ~~~~~~k~i~~~~~~~~r~~~~~~i~~la~~v~ttlGP~G~~kmI~~~~g~~~ITnDG~TIlk~i~~~hP~~~~gakll~ 137 (571)
++-...|.-.|| -++.++.+-+..+++.++++|+||+|++|++..+.|++.+|||| .|+. ++++.
T Consensus 15 LrDQd~~~Ri~G--~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~I----akLmv 79 (400)
T KOG0357|consen 15 LRDQERKDRLFG--LDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQI----AKLIV 79 (400)
T ss_pred eeeccCCchhhH--HHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHH----HHHHH
Confidence 344445667788 89999999999999999999999999999999999999999999 6777 99999
Q ss_pred HHHHhcccccCCcccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHhhcCCch
Q 008279 138 QAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNY 217 (571)
Q Consensus 138 ~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~L~~va~ts~~~~~ 217 (571)
..+..|+.++|||||.+++|++.+++++.+++.+|+||..|..||+.+...++++|.+.+.+++
T Consensus 80 ~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e---------------- 143 (400)
T KOG0357|consen 80 ILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE---------------- 143 (400)
T ss_pred HhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc----------------
Confidence 9999999999999999999999999999999999999999999999999999999998776643
Q ss_pred HHHHHHHHHHHhhccCCceEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEeeecccCCCHHHHHHH
Q 008279 218 EVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINV 297 (571)
Q Consensus 218 ~ls~li~~Av~~v~~~g~I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll~d~~i~~~~~l~~~ 297 (571)
+.++
T Consensus 144 ----------------------------------------------------------------------------f~em 147 (400)
T KOG0357|consen 144 ----------------------------------------------------------------------------FEEM 147 (400)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 4567
Q ss_pred HHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCeEeecccCccccCCCCCC
Q 008279 298 LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEV 377 (571)
Q Consensus 298 le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~ 377 (571)
++.+++.|.+|+||+|+|||||.++|..|++ -||| |+.-.++|-||+.|||+++. +|++++++.
T Consensus 148 i~~vK~~ga~l~icqwgfddeanhll~~n~l------pavr-----wVGGpEiEliAiaT~grIVp-----rF~eL~~~k 211 (400)
T KOG0357|consen 148 IQQIKETGANLAICQWGFDDEANHLLLQNNL------PAVR-----WVGGPEIELIAIATGGRIVP-----RFSELTAEK 211 (400)
T ss_pred HHHHHhhCCcEEEEecccCchhhhHHhhcCC------Ccee-----ecCCcceEEEEeecCCeeec-----cHhhhCHhh
Confidence 8899999999999999999999999999976 3555 45567889999999999999 699999999
Q ss_pred ceeeeEEEE-----ecceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHH
Q 008279 378 LGNASKVVL-----TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKE 452 (571)
Q Consensus 378 lG~~~~v~i-----~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E 452 (571)
||+|+.|+. ++|+.++++.|++. +.+||.|||.+..+++|
T Consensus 212 LG~aglVrE~sfgttkdkmlviEqc~ns-----------------------------------kaVTifvRg~Nkmii~E 256 (400)
T KOG0357|consen 212 LGFAGLVREISFGTTKDKMLVIEQCKNS-----------------------------------KAVTIFVRGGNKMIIEE 256 (400)
T ss_pred ccccceEEEEecccccceEEEEEecCCC-----------------------------------ceEEEEEecCcceeHHH
Confidence 999999963 38999999999875 47899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHhHHHHHHHHHcCCChHHHHHH
Q 008279 453 KKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEK 531 (571)
Q Consensus 453 ~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e~~~~~~~~~~AL~~ip~~La~NaG~d~~~vi~k 531 (571)
.||++|||||++|+.+++. +|+|||++|+.||-.+.+.++++++.|| +++++|++||++||..||+|+|++|++.+++
T Consensus 257 akrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eq-ya~rafa~ale~ipmalaensgl~pi~~ls~ 335 (400)
T KOG0357|consen 257 AKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQ-YAFRAFADALESIPMALAENSGLDPIETLSD 335 (400)
T ss_pred HHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHH-HHHHHHHHHHhhcchhhhhccCCCchhhhhH
Confidence 9999999999999999998 9999999999999999999999999988 7999999999999999999999999999999
Q ss_pred HHhc----CCCceeEEcCCCcccchhhcCcccchhHH-HHHHhc
Q 008279 532 VLSS----DNHKYGYNAATGNYEDLMAAGIIDPTKVS-CCIAIA 570 (571)
Q Consensus 532 l~~~----~~~~~Gid~~~~~i~d~~~~gI~Dp~~vk-~~l~~A 570 (571)
+++. .++++|+|+.-..-.||.+.+|+||+..| +.+..|
T Consensus 336 ~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~la 379 (400)
T KOG0357|consen 336 VKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLA 379 (400)
T ss_pred hHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHH
Confidence 9753 57899999987777899999999999999 887765
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.95 E-value=2.1e-27 Score=233.11 Aligned_cols=191 Identities=37% Similarity=0.489 Sum_probs=167.2
Q ss_pred HHHHHHHhhcC-----CchHHHHHHHHHHHhhcc------CCceEE--ecCCccccceeeeeeeEEeecccCCccccCcc
Q 008279 204 ELADVAAVSAG-----NNYEVGNMIAEAMSKVGR------KGVVTL--EEGKSAENMLYVVEGMQFDRGYISPYFVTDSE 270 (571)
Q Consensus 204 ~L~~va~ts~~-----~~~~ls~li~~Av~~v~~------~g~I~i--~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~ 270 (571)
.|.++|+++++ +++.+++++++|+..+++ .+.|++ .+|+++.|+ ++++|++|+++|.+|+
T Consensus 3 ~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds-~li~Gv~~~~~~~~~~------ 75 (209)
T cd03333 3 LLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS-ELVVGVVFDKGYASPY------ 75 (209)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhc-eeEeeEEEeccccCCC------
Confidence 57899999988 789999999999999987 344444 699999999 8999999999999986
Q ss_pred cCeeeecceeEeeecccCCCHHHHHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhH
Q 008279 271 KMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYL 350 (571)
Q Consensus 271 ~~~~~~~n~kIll~d~~i~~~~~l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L 350 (571)
|+.+++||+|+++++++.. +|+++++|+++++++|..+ +|+||++ +++++|
T Consensus 76 -m~~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~------~I~~v~~-----~~~~~l 126 (209)
T cd03333 76 -MPKRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKA------GIMAVRR-----VKKEDL 126 (209)
T ss_pred -CCeEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHC------CCEEEEe-----CCHHHH
Confidence 4678999999999999876 8898999999999999875 5788874 668999
Q ss_pred HHHHHHhCCeEeecccCccccCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHHhhhcHHHHHHHH
Q 008279 351 DDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLN 427 (571)
Q Consensus 351 ~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~l~ 427 (571)
+|||++|||++++ ++++++++.||+|+++++. ++.++++.++..
T Consensus 127 ~~ia~~tga~ii~-----~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~---------------------------- 173 (209)
T cd03333 127 ERIARATGATIVS-----SLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKG---------------------------- 173 (209)
T ss_pred HHHHHHHCCEEec-----ccccCChhhceeeeEEEEEEECCeEEEEEEcCCC----------------------------
Confidence 9999999999998 4788889999999999865 456888887754
Q ss_pred HHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 008279 428 ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 470 (571)
Q Consensus 428 er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~ 470 (571)
+..|||+|||+|+.+++|.||+++||++++++++++
T Consensus 174 -------~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 174 -------GKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred -------CCEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 358999999999999999999999999999999864
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.94 E-value=3.6e-26 Score=231.53 Aligned_cols=199 Identities=19% Similarity=0.165 Sum_probs=166.7
Q ss_pred CchHHHHHHHHHHHhhccC----------CceE--EecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEe
Q 008279 215 NNYEVGNMIAEAMSKVGRK----------GVVT--LEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLL 282 (571)
Q Consensus 215 ~~~~ls~li~~Av~~v~~~----------g~I~--i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIl 282 (571)
+.+.|++++++|+..+.++ ..|+ ..+|+++.|| ++++|++|++++.++ +|+.+++||+|+
T Consensus 19 ~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS-~li~Gvvi~k~~~~~-------~m~~~i~n~kIl 90 (261)
T cd03334 19 WLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDS-EVVDGVVFTKNVAHK-------RMPSKIKNPRIL 90 (261)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHc-EEEeeEEEeCCCCCc-------cCCcccCCCcEE
Confidence 4689999999999998532 1243 3699999999 899999999997764 478889999999
Q ss_pred eecccCCCH------H-----------HHHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCc
Q 008279 283 LVDKKITNA------R-----------DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (571)
Q Consensus 283 l~d~~i~~~------~-----------~l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~ 345 (571)
++++++... . .+..+++++++.|+++||++++|++.++++|.++ +|++|+ ++
T Consensus 91 ll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~-----~v 159 (261)
T cd03334 91 LLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVL-----NV 159 (261)
T ss_pred EEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEE-----ec
Confidence 999986332 1 2455788999999999999999999999999886 457766 66
Q ss_pred chhhHHHHHHHhCCeEeecccCccccCCCCCCceeeeEEEEe---c-----ceEEEEcCCCChhhHHHHHHHHHHHHHhh
Q 008279 346 KSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---K-----DTTTIVGDGSTQDAVSKRVAQIRTLIENA 417 (571)
Q Consensus 346 ~~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~i~---~-----~~~~~i~~~~~~~~i~~ri~~l~~~~~~~ 417 (571)
++.+|++||++|||+++++. .+.++++.||+|+.|++. + +.+++|++|+.+
T Consensus 160 ~~~dl~rIa~~tGa~ii~~i----~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~----------------- 218 (261)
T cd03334 160 KPSVLERISRCTGADIISSM----DDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE----------------- 218 (261)
T ss_pred CHHHHHHHHHHhCCEEecCh----hhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC-----------------
Confidence 68999999999999999830 347888999999999853 2 589999988653
Q ss_pred hcHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008279 418 EQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 471 (571)
Q Consensus 418 ~~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g 471 (571)
..+||+|||+|++.++|.||+++||+++++++..++
T Consensus 219 ------------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 ------------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred ------------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 479999999999999999999999999999998775
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.05 E-value=1.5e-09 Score=126.64 Aligned_cols=206 Identities=19% Similarity=0.229 Sum_probs=159.2
Q ss_pred chHHHHHHHHHHHhhccC----------Cc--eEEecCCccccceeeeeeeEEeecccCCccccCcccCeeeecceeEee
Q 008279 216 NYEVGNMIAEAMSKVGRK----------GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLL 283 (571)
Q Consensus 216 ~~~ls~li~~Av~~v~~~----------g~--I~i~~G~~~~ds~~lv~G~~~~~g~~~p~~~~~~~~~~~~~~n~kIll 283 (571)
.+.+..++.+|...+.++ +. |+.+.||+..|+ +++.|+++.+...+ +.|..++++|+|++
T Consensus 334 ~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS-~vi~Gvv~sKn~~~-------k~M~~~~e~prill 405 (1598)
T KOG0230|consen 334 LDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDS-EVIKGVVCSKNVAH-------KRMATKYENPRILL 405 (1598)
T ss_pred HHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccc-eeeeEEEeecchhh-------hhhhhhccCCceEE
Confidence 466777888888887664 12 455788999999 99999999987655 45777899999999
Q ss_pred ecccC---------CCHH--------HHHHHHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcc
Q 008279 284 VDKKI---------TNAR--------DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERK 346 (571)
Q Consensus 284 ~d~~i---------~~~~--------~l~~~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~ 346 (571)
+.+++ .+.+ .+...+.++.....+++++.+.|++.|.++|... |+.-+. +++
T Consensus 406 l~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k---~I~lvl--------nvK 474 (1598)
T KOG0230|consen 406 LGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDK---GISLVL--------NVK 474 (1598)
T ss_pred EecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhcc---CeEEEE--------ecc
Confidence 88753 2222 2344567778888999999999999999988664 332222 788
Q ss_pred hhhHHHHHHHhCCeEeecccCccccCCCCCCceeeeEEEEe--------cceEEEEcCCCChhhHHHHHHHHHHHHHhhh
Q 008279 347 SQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT--------KDTTTIVGDGSTQDAVSKRVAQIRTLIENAE 418 (571)
Q Consensus 347 ~~~L~~ia~~tGa~ii~~~~~~~~~~~~~~~lG~~~~v~i~--------~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~ 418 (571)
+..|+||++.||+.|+. +++.++...||+|..+++. ...++|+++|+.+
T Consensus 475 ~s~leRIsR~tga~I~~-----siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~------------------ 531 (1598)
T KOG0230|consen 475 RSLLERISRCTGADIVP-----SVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKP------------------ 531 (1598)
T ss_pred HHHHHHHHHHhcCceec-----chhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCC------------------
Confidence 99999999999999998 5888999999999999753 2345678888754
Q ss_pred cHHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHH-HHhcCccccchhHh
Q 008279 419 QDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKA-AVEEGIVVGGGCTL 480 (571)
Q Consensus 419 ~~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~-al~~gvVpGGGa~e 480 (571)
.-|||++||.+..++.+.|+-+.-++-++-+ +++.-++.--|+..
T Consensus 532 -----------------lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi 577 (1598)
T KOG0230|consen 532 -----------------LGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASI 577 (1598)
T ss_pred -----------------CCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCcc
Confidence 2479999999999999999999988888864 45555666666543
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00058 Score=76.05 Aligned_cols=89 Identities=24% Similarity=0.276 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcCCC-eEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhH-HHHHHHhCCeEeecccCcccc
Q 008279 294 LINVLEDAIRGAYP-ILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYL-DDIAILTGGTVIRDEVGLALD 371 (571)
Q Consensus 294 l~~~le~i~~~g~~-lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L-~~ia~~tGa~ii~~~~~~~~~ 371 (571)
+..+++.+.+.|.+ ++|++++|+|.++++|..+ .|++++ ++.++++ ++|+.+|||++++ .++
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~------~Ilt~~-----~v~~~dl~~~l~~~~ga~~v~-----~~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI------AILTGR-----RVKKEDLGERLAKLGGAKIVS-----VLK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhh------cceecc-----eecchhhHHHHHHccCceEEe-----ecc
Confidence 45567788899999 8899999999999999876 445544 5667888 7999999999998 588
Q ss_pred CCCCCCcee--eeEEEEe---cceEEEEcCCC
Q 008279 372 KVGKEVLGN--ASKVVLT---KDTTTIVGDGS 398 (571)
Q Consensus 372 ~~~~~~lG~--~~~v~i~---~~~~~~i~~~~ 398 (571)
++++..+|. |+.|+.. +++++++.++.
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~ 354 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQERK 354 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhhhh
Confidence 999999999 9999743 55666666553
No 47
>smart00574 POX domain associated with HOX domains.
Probab=46.84 E-value=88 Score=28.75 Aligned_cols=59 Identities=22% Similarity=0.213 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHh
Q 008279 420 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIK 491 (571)
Q Consensus 420 ~~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~ 491 (571)
..|++.++.+.++|. ..++|.+++++--..-++..+..- .|+|.|++-.+.+-+|+..+
T Consensus 69 ~~~r~e~q~kk~kLl-------------~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~S 128 (140)
T smart00574 69 TAERQELQRKKAKLL-------------SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTIS 128 (140)
T ss_pred hhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 446667777766653 366777777777777777666664 78999998888877777654
No 48
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=41.77 E-value=8 Score=43.46 Aligned_cols=60 Identities=27% Similarity=0.423 Sum_probs=50.1
Q ss_pred CCCeEEEcccccH-----HHHHHHHHhhhcccc----eeeeeccCCccCcchhhHHHHHHHhCCeEeecc
Q 008279 305 AYPILIIAEDIEQ-----EALATLVVNKLRGAL----KIAALKAPGFGERKSQYLDDIAILTGGTVIRDE 365 (571)
Q Consensus 305 g~~lvI~~~~i~~-----~aL~~l~~n~~~g~~----~i~avk~~~~~~~~~~~L~~ia~~tGa~ii~~~ 365 (571)
..++.|..+++++ +++..++.++++++. ++++++.| +++...++|++.+++++.++..++
T Consensus 247 ~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~d 315 (522)
T TIGR02345 247 KDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDED 315 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHHH
Confidence 3477788888888 888888888888755 78999988 999999999999999998877653
No 49
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=37.24 E-value=1.3e+02 Score=27.01 Aligned_cols=41 Identities=24% Similarity=0.352 Sum_probs=29.6
Q ss_pred HHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCc
Q 008279 297 VLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 345 (571)
Q Consensus 297 ~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~ 345 (571)
+.+.+++.|+++||+. .+.+.+++.|-.. +|-+++.++ +.+
T Consensus 57 ~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~------GIkv~~~~~-~~V 97 (121)
T COG1433 57 IAELLVDEGVDVVIAS-NIGPNAYNALKAA------GIKVYVAPG-GTV 97 (121)
T ss_pred HHHHHHHcCCCEEEEC-ccCHHHHHHHHHc------CcEEEecCC-CCH
Confidence 5678899999999976 6788888887664 345555555 444
No 50
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=36.89 E-value=1.3e+02 Score=27.74 Aligned_cols=58 Identities=26% Similarity=0.263 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhcC-ccccchhHhhHHHHHHHHHh
Q 008279 421 YEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIK 491 (571)
Q Consensus 421 ~e~~~l~er~~~l~g~~~tI~vrG~t~~~l~E~~r~l~DAl~~~r~al~~g-vVpGGGa~e~~ls~~L~~~~ 491 (571)
-+++.++.+.++|. ..++|.+++++--..-++..+..- -|.|.|++-.+.+-+|+..+
T Consensus 70 ~~~~e~q~kK~KLl-------------~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamS 128 (140)
T PF07526_consen 70 AERQELQRKKAKLL-------------SMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMS 128 (140)
T ss_pred hhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 45566666666653 256666666666666666555553 68899999888887777654
No 51
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=26.36 E-value=2.9e+02 Score=23.17 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=32.0
Q ss_pred HHHHHHHcCCCeEEEcccccHHHHHHHHHhhhcccceeeeeccCCccCcchhhHHHHHHHhCCe
Q 008279 297 VLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 360 (571)
Q Consensus 297 ~le~i~~~g~~lvI~~~~i~~~aL~~l~~n~~~g~~~i~avk~~~~~~~~~~~L~~ia~~tGa~ 360 (571)
.++.+.+..+.+|++++|+++....-+..--.+...+++-| ..+++|.++||-.
T Consensus 21 t~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V----------~s~~~LGkAcgi~ 74 (84)
T PRK13600 21 TLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFF----------KSKHALGKHVGIN 74 (84)
T ss_pred HHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE----------CCHHHHHHHhCCC
Confidence 45566666678999999999876654432111111233322 2357788888764
Done!